The MOBY-Mygrid Service Ontology

Classes

beanshell^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#beanshell

has super-classes: service type^c

bioinformatics algorithm^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/ontology#bioinformatics_algorithm

has super-classes: operation method^c

bioinformatics data^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/ontology#bioinformatics_data

has super-classes: parameter^c

bioinformatics data resource^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/ontology#bioinformatics_data_resource

has super-classes: operation resource^c

bioinformatics file formats^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/ontology#bioinformatics_file_formats

has super-classes: parameter^c

bioinformatics metadata^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/ontology#bioinformatics_metadata

has super-classes: parameter^c

bioinformatics task^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/ontology#bioinformatics_task

has super-classes: operation task^c

biomart^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#biomart

has super-classes: service type^c

collection parameter^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#collectionParameter

has super-classes: parameterType^c
has sub-classes: map parameter^c, ordered collection parameter^c, set parameter^c

inferno^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#inferno

has super-classes: service type^c

localjava^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#localjava

has super-classes: service type^c

map parameter^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#mapParameter

has super-classes: collection parameter^c

moby^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#moby

has super-classes: service type^c

moby asynch^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#moby-asynch

has super-classes: service type^c

ordered collection parameter^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#orderedCollectionParameter

has super-classes: collection parameter^c

parameterType^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#parameterType

has sub-classes: collection parameter^c, secondary parameter^c, simple parameter^c
is in range of: has parameter type^op

r processor^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#R-processor

has super-classes: service type^c

scufl^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#scufl

has super-classes: service type^c

secondary parameter^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter

has super-classes: parameterType^c

seqhound^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#seqhound

has super-classes: service type^c

serviceDescription^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#serviceDescription

is in domain of: has configured instance example^dp, has interface location^dp, has operation^op, has service description location^dp, has service description text^dp, has service name text^dp, has service type^op, is alive^dp, location u r i^dp, provided by^op

set parameter^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#setParameter

has super-classes: collection parameter^c

simple parameter^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter

has super-classes: parameterType^c

soaplab^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#soaplab

has super-classes: service type^c

talisman^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#talisman

has super-classes: service type^c

unit test^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#unitTest

has super-classes: thing^c
is in domain of: example input^dp, valid output x m l^dp, valid r e g e x^dp, valid x path^dp
is in range of: has unit test^op

wsdl^c back to ToC or Class ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#wsdl

has super-classes: service type^c

has operation^op back to ToC or Object Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#hasOperation

has domain: serviceDescription^c
has range: operation^c

has parameter type^op back to ToC or Object Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#hasParameterType

has domain: parameter^c
has range: parameterType^c

has service type^op back to ToC or Object Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#hasServiceType

has domain: serviceDescription^c
has range: service type^c

has unit test^op back to ToC or Object Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#hasUnitTest

has domain: operation^c
has range: unit test^c

in namespaces^op back to ToC or Object Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#inNamespaces

has domain: parameter^c
has range: parameter namespace^c or bioinformatics data^c or bioinformatics metadata^c

input parameter^op back to ToC or Object Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#inputParameter

has domain: operation^c
has range: parameter^c

object type^op back to ToC or Object Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#objectType

has domain: parameter^c

output parameter^op back to ToC or Object Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#outputParameter

has domain: operation^c
has range: parameter^c

performs task^op back to ToC or Object Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#performsTask

has domain: operation^c
has range: operation task^c

provided by^op back to ToC or Object Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#providedBy

has domain: serviceDescription^c
has range: organisation^c

uses method^op back to ToC or Object Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#usesMethod

has domain: operation^c
has range: operation method^c

uses resource^op back to ToC or Object Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#usesResource

has domain: operation^c
has range: operation resource^c

Data Properties

authoritative^dp back to ToC or Data Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#authoritative

has domain: organisation^c
has range: string

datatype^dp back to ToC or Data Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#datatype

has domain: parameter^c
has range: string

enum^dp back to ToC or Data Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#enum

has domain: parameter^c
has range: string

example input^dp back to ToC or Data Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#exampleInput

This should carry the full body of the input message (e.g. the SOAP payload). It does not contain individual parameter-values, but rather carrys the entire invocation message.

has domain: unit test^c
has range: string

has configured instance example^dp back to ToC or Data Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#hasConfiguredInstanceExample

This is a link to an executable version of the service. This will normally be represented by a workflow containing just the service

has domain: operation^c; serviceDescription^c
has range: any u r i

has default value^dp back to ToC or Data Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#hasDefaultValue

describes preconfigured values for input parameters

has domain: parameter^c
has range: string

has interface location^dp back to ToC or Data Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#hasInterfaceLocation

has domain: serviceDescription^c
has range: string

has operation name text^dp back to ToC or Data Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#hasOperationNameText

has domain: operation^c
has range: string

has organisation description text^dp back to ToC or Data Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#hasOrganisationDescriptionText

has domain: organisation^c
has range: string

has parameter description text^dp back to ToC or Data Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#hasParameterDescriptionText

has domain: parameter^c
has range: string

has parameter name text^dp back to ToC or Data Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#hasParameterNameText

has domain: parameter^c
has range: string

has service description location^dp back to ToC or Data Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#hasServiceDescriptionLocation

has domain: serviceDescription^c
has range: string

has service description text^dp back to ToC or Data Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#hasServiceDescriptionText

has domain: serviceDescription^c
has range: string

has service name text^dp back to ToC or Data Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#hasServiceNameText

has domain: serviceDescription^c
has range: string

has taverna processor spec^dp back to ToC or Data Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#hasTavernaProcessorSpec

has domain: operation^c
has range: string

is alive^dp back to ToC or Data Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#isAlive

has domain: serviceDescription^c
has range: boolean

is mandatory^dp back to ToC or Data Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#isMandatory

describes whether an input parameter is required or optional to execute the service

has domain: parameter^c
has range: boolean

location u r i^dp back to ToC or Data Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#locationURI

has domain: serviceDescription^c
has range: string

max^dp back to ToC or Data Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#max

has domain: parameter^c
has range: string

min^dp back to ToC or Data Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#min

has domain: parameter^c
has range: string

valid output x m l^dp back to ToC or Data Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#validOutputXML

value should be the full XML body of the output message (i.e. the SOAP Payload) which can be used canonically (using xmldiff) to validate the output from the service given the input of the associated unit test.

has domain: unit test^c
has range: string

valid r e g e x^dp back to ToC or Data Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#validREGEX

value is a regular expression that should match the output from the service given the associated input from the unit test

has domain: unit test^c
has range: string

valid x path^dp back to ToC or Data Property ToC

IRI: http://www.mygrid.org.uk/mygrid-moby-service#validXPath

value is an XPath statement that can be used to validate the output of a service given the associated input in the unit test

has domain: unit test^c
has range: string

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni.

The MOBY-Mygrid Service Ontology

Table of Content

Classes

beanshellc back to ToC or Class ToC

bioinformatics algorithmc back to ToC or Class ToC

bioinformatics datac back to ToC or Class ToC

bioinformatics data resourcec back to ToC or Class ToC

bioinformatics file formatsc back to ToC or Class ToC

bioinformatics metadatac back to ToC or Class ToC

bioinformatics taskc back to ToC or Class ToC

biomartc back to ToC or Class ToC

collection parameterc back to ToC or Class ToC

infernoc back to ToC or Class ToC

localjavac back to ToC or Class ToC

map parameterc back to ToC or Class ToC

mobyc back to ToC or Class ToC

moby asynchc back to ToC or Class ToC

ordered collection parameterc back to ToC or Class ToC

parameterTypec back to ToC or Class ToC

r processorc back to ToC or Class ToC

scuflc back to ToC or Class ToC

secondary parameterc back to ToC or Class ToC

seqhoundc back to ToC or Class ToC

serviceDescriptionc back to ToC or Class ToC

set parameterc back to ToC or Class ToC

simple parameterc back to ToC or Class ToC

soaplabc back to ToC or Class ToC

talismanc back to ToC or Class ToC

unit testc back to ToC or Class ToC

wsdlc back to ToC or Class ToC

Object Properties

has operationop back to ToC or Object Property ToC

has parameter typeop back to ToC or Object Property ToC

has service typeop back to ToC or Object Property ToC

has unit testop back to ToC or Object Property ToC

in namespacesop back to ToC or Object Property ToC

input parameterop back to ToC or Object Property ToC

object typeop back to ToC or Object Property ToC

output parameterop back to ToC or Object Property ToC

performs taskop back to ToC or Object Property ToC

provided byop back to ToC or Object Property ToC

uses methodop back to ToC or Object Property ToC

uses resourceop back to ToC or Object Property ToC