IRI:
http://onto.eva.mpg.de/ontologies/gfo-bio.owl
Imported Ontologies:
http://www.onto-med.de/ontologies/gfo.owl (visualise it with LODE)
Other visualisation:
Ontology source

Abstract

Copyright (c) 2006, Regents of the Research Group Ontologies in Medicine (Onto-Med), University of Leipzig, and the Max-Planck-Institute for Evolutionary Anthropology. All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. Neither the name of the Research Group Ontologies in Medicine (Onto-Med), University of Leipzig or the Max-Planck-Institute for Evolutionary Anthropology nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Table of Content

  1. Classes
  2. Object Properties
  3. Annotation Properties
  4. General Axioms
  5. Namespace Declarations

Classes

adenine symbolc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Adenine_symbol

has super-classes
nucleotide symbolc

amino acidc back to ToC or Class ToC

IRI: http://www.co-ode.org/ontologies/amino-acid/2005/10/11/amino-acid.owl#AminoAcid

has super-classes
instance ofop some amino acid symbolc

amino acid moleculec back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Amino_acid_molecule

is equivalent to
amino acidc
has super-classes
moleculec
instance ofop some amino acid symbolc

amino acid sequencec back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Amino_acid_sequence

has super-classes
symbol sequencec

amino acid symbolc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Amino_acid_symbol

has super-classes
symbolc
instantiated byop only amino acid moleculec

anatomical developmentc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Anatomical_development

has super-classes
biological processc
has participantop some anatomical partc
has sub-classes
arabidopsis anatomical developmentc, plant anatomical developmentc

anatomical partc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Anatomical_part

is equivalent to
part ofop some organismc
has super-classes
biological material objectc
has sub-classes
anatomical part of animalc, anatomical part of fungusc, anatomical part of mousec, anatomical part of plantc

anatomical part of animalc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Anatomical_part_of_animal

is equivalent to
part ofop some animalc
has super-classes
anatomical partc
has sub-classes
anatomical part of dictyostelium discoideumc

anatomical part of arabidopsisc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Anatomical_part_of_arabidopsis

has super-classes
anatomical part of plantc
part ofop some arabidopsisc

anatomical part of dictyostelium discoideumc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Anatomical_part_of_dictyostelium_discoideum

has super-classes
anatomical part of animalc

anatomical part of fungusc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Anatomical_part_of_fungus

is equivalent to
part ofop some fungusc
has super-classes
anatomical partc

anatomical part of mousec back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Anatomical_part_of_mouse

is equivalent to
part ofop some mousec
has super-classes
anatomical partc
has sub-classes
m a 0000001c

anatomical part of plantc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Anatomical_part_of_plant

is equivalent to
part ofop some plantc
has super-classes
anatomical partc
has sub-classes
anatomical part of arabidopsisc

animalc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Animal

has super-classes
multicellular organismc
has sub-classes
caenorhabditis elegansc, dictyostelium discoideumc, drosophilac, habronattus californicusc, humanc, loggerhead sea turtlec, mammalc, medaka fishc, mosquitoc, mousec, zebrafishc

arabidopsisc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Arabidopsis

has super-classes
plantc

arabidopsis anatomical developmentc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Arabidopsis_anatomical_development

has super-classes
anatomical developmentc
has participantop some anatomical part of arabidopsisc
has sub-classes
t a i r 0000022c

arabidopsis developmentc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Arabidopsis_development

has super-classes
organism developmentc
has participantop some arabidopsisc

arabidopsis development stagec back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Arabidopsis_development_stage

has super-classes
development stagec
has participantop some arabidopsisc
part ofop some arabidopsis developmentc
has sub-classes
t a i r 0000021c

atomc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Atom

is equivalent to
elemental substancec
has super-classes
chemical presentialc
material objectc

biological actionc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Biological_action

has super-classes
actionc

biological configurationc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Biological_configuration

is equivalent to
configurationc and (on levelop some biological levelc)
has super-classes
configurationc

biological configuroidc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Biological_configuroid

has super-classes
configuroidc

biological experimentc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Biological_experiment

has super-classes
experimentc
has participantop some biological presentialc

biological functionc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Biological_function

has super-classes
functionc

biological individualc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Biological_individual

has super-classes
individualc
on levelop some biological levelc

biological material objectc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Biological_material_object

is equivalent to
material objectc and (on levelop some biological levelc)
has super-classes
material objectc
has sub-classes
anatomical partc, cellc, cell componentc, organismc, tissuec

biological occurentc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Biological_occurent

has super-classes
occurrentc

biological presentialc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Biological_presential

is equivalent to
presentialc and (on levelop some biological levelc)
has super-classes
presentialc

biological processc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Biological_process

is equivalent to
((processc) and (on levelop some biological levelc))
has super-classes
processc
has sub-classes
anatomical developmentc, development stagec, organism developmentc

biological situationc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Biological_situation

is equivalent to
situationc and (on levelop some biological levelc)
has super-classes
situationc

biological situoidc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Biological_situoid

has super-classes
situoidc

caenorhabditis elegansc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Caenorhabditis_elegans

has super-classes
animalc

cellc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Cell

has super-classes
biological material objectc

cell componentc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Cell_component

has super-classes
biological material objectc
has sub-classes
g o 0005575c

cereal plantc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Cereal_plant

has super-classes
plantc

chemical presentialc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Chemical_presential

is equivalent to
presentialc and (on levelop some chemical levelc)
has super-classes
presentialc
has sub-classes
atomc, moleculec

chemical processc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Chemical_process

is equivalent to
processc and (on levelop some chemical levelc)
has super-classes
processc
has sub-classes
chemical reactionc

chemical reactionc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Chemical_reaction

has super-classes
chemical processc
has sub-classes
pathwayc

cytosine symbolc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Cytosine_symbol

has super-classes
nucleotide symbolc

d n ac back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#DNA

has super-classes
polynucleotide moleculec
instance ofop some d n a sequencec

d n a sequencec back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#DNA_sequence

has super-classes
nucleotide sequencec

development stagec back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Development_stage

has super-classes
biological processc
has participantop exactly 1
part ofop some organism developmentc
has sub-classes
arabidopsis development stagec, plant development stagec

dictyostelium discoideumc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Dictyostelium_discoideum

has super-classes
animalc

drosophilac back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Drosophila

has super-classes
animalc

elemental substancec back to ToC or Class ToC

IRI: http://reliant.teknowledge.com/DAML/SUMO.owl#ElementalSubstance

This is the entry point for a Period Table OWL File. Unfortunately, Pellet seems to die with every publicly available Period Table in OWL, therefore this is just the entry point. Declare the appropriate class equivalent with this one or Atom if you want to use elements.

experimentc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Experiment

has super-classes
actionc
has sub-classes
biological experimentc

experiment methodc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Experiment_method

has super-classes
methodc
instantiated byop only experimentc

fungusc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Fungus

has super-classes
organismc

g o 0005575c back to ToC or Class ToC

IRI: http://www.geneontology.org/owl/#GO_0005575

has super-classes
cell componentc

guanine symbolc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Guanine_symbol

has super-classes
nucleotide symbolc

habronattus californicusc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Habronattus_californicus

has super-classes
animalc

humanc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Human

has super-classes
animalc

loggerhead sea turtlec back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Loggerhead_sea_turtle

has super-classes
animalc

m a 0000001c back to ToC or Class ToC

IRI: http://www.geneontology.org/owl/#MA_0000001

has super-classes
anatomical part of mousec

maizec back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Maize

has super-classes
plantc

mammalc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Mammal

has super-classes
animalc

medaka fishc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Medaka_fish

has super-classes
animalc

methodc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Method

has super-classes
conceptc
has sub-classes
experiment methodc

moleculec back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Molecule

has super-classes
chemical presentialc
material objectc
has proper partop some atomc
has sub-classes
amino acid moleculec, nucleotide moleculec, polynucleotide moleculec, proteinc, protein domainc

monocellular organismc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Monocellular_organism

is equivalent to
cellc and organismc
has super-classes
organismc
has sub-classes
plasmodium falciparumc

mosquitoc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Mosquito

has super-classes
animalc

mousec back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Mouse

has super-classes
animalc

multicellular organismc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Multicellular_organism

has super-classes
organismc
has proper partop some cellc
has sub-classes
animalc

nucleotide moleculec back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Nucleotide_molecule

has super-classes
moleculec
instance ofop some nucleotide symbolc

nucleotide sequencec back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Nucleotide_sequence

has super-classes
symbol sequencec
has sub-classes
d n a sequencec, r n a sequencec

nucleotide symbolc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Nucleotide_symbol

has super-classes
symbolc
instantiated byop only nucleotide moleculec
has sub-classes
adenine symbolc, cytosine symbolc, guanine symbolc, thymine symbolc, uracil symbolc

organismc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Organism

has super-classes
biological material objectc
has sub-classes
fungusc, monocellular organismc, multicellular organismc, plantc

organism developmentc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Organism_development

has super-classes
biological processc
has participantop some organismc
has participantop exactly 1
has sub-classes
arabidopsis developmentc, plant developmentc

p o 0007021c back to ToC or Class ToC

IRI: http://www.geneontology.org/owl/#PO_0007021

has super-classes
plant anatomical developmentc

p o 0007033c back to ToC or Class ToC

IRI: http://www.geneontology.org/owl/#PO_0007033

has super-classes
plant development stagec

pathwayc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Pathway

is equivalent to
(has partop some chemical reactionc) and (has partop min 1)
has super-classes
chemical reactionc

plantc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Plant

has super-classes
organismc
has sub-classes
arabidopsisc, cereal plantc, maizec

plant anatomical developmentc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Plant_anatomical_development

has super-classes
anatomical developmentc
has participantop some anatomical part of plantc
has sub-classes
p o 0007021c

plant developmentc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Plant_development

has super-classes
organism developmentc
has participantop some plantc

plant development stagec back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Plant_development_stage

has super-classes
development stagec
has participantop some plantc
part ofop some plant developmentc
has sub-classes
p o 0007033c

plasmodium falciparumc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Plasmodium_falciparum

has super-classes
monocellular organismc

polynucleotide moleculec back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Polynucleotide_molecule

has super-classes
moleculec
has partop some nucleotide moleculec
has sub-classes
d n ac, r n ac

proteinc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Protein

has super-classes
moleculec
has partop some amino acid moleculec
has partop some protein domainc

protein domainc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Protein_domain

has super-classes
moleculec
part ofop some proteinc

r n ac back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#RNA

has super-classes
polynucleotide moleculec
instance ofop some r n a sequencec

r n a sequencec back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#RNA_sequence

has super-classes
nucleotide sequencec

speciesc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Species

has super-classes
conceptc

t a i r 0000021c back to ToC or Class ToC

IRI: http://www.geneontology.org/owl/#TAIR_0000021

has super-classes
arabidopsis development stagec

t a i r 0000022c back to ToC or Class ToC

IRI: http://www.geneontology.org/owl/#TAIR_0000022

has super-classes
arabidopsis anatomical developmentc

thymine symbolc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Thymine_symbol

has super-classes
nucleotide symbolc

tissuec back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Tissue

has super-classes
biological material objectc

tokenc back to ToC or Class ToC

IRI: http://www.onto-med.de/ontologies/gfo.owl#Token

is equivalent to
instance ofop some symbol structurec

uracil symbolc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Uracil_symbol

has super-classes
nucleotide symbolc

zebrafishc back to ToC or Class ToC

IRI: http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Zebrafish

has super-classes
animalc

Object Properties

develops fromop back to ToC or Object Property ToC

IRI: http://www.geneontology.org/owl/#develops_from

o b o r e l has partop back to ToC or Object Property ToC

IRI: http://www.geneontology.org/owl#OBO_REL_has_part

has equivalent properties
has partop

o b o r e l has participantop back to ToC or Object Property ToC

IRI: http://www.geneontology.org/owl#OBO_REL_has_participant

has equivalent properties
has participantop

o b o r e l part ofop back to ToC or Object Property ToC

IRI: http://www.geneontology.org/owl#OBO_REL_part_of

has equivalent properties
part ofop

o b o r e l participates inop back to ToC or Object Property ToC

IRI: http://www.geneontology.org/owl#OBO_REL_participates_in

has equivalent properties
participates inop

part ofop back to ToC or Object Property ToC

IRI: http://www.geneontology.org/owl/#part_of

has equivalent properties
part ofop

Annotation Properties

commentap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#comment

General Axioms

General Subclass Definition back to ToC

part ofop some cellc is subclass of

cell componentc

General Subclass Definition back to ToC

part ofop some m a 0000001c is subclass of

anatomical part of mousec

General Subclass Definition back to ToC

part ofop some g o 0005575c is subclass of

cell componentc

General Subclass Definition back to ToC

(develops fromop some d d a n a t 0000001c) or (part ofop some d d a n a t 0000001c) is subclass of

anatomical part of dictyostelium discoideumc

Namespace Declarations back to ToC

default namespace
http://onto.eva.mpg.de/ontologies/gfo-bio.owl#
amino-acid-owl
http://www.co-ode.org/ontologies/amino-acid/2005/10/11/amino-acid.owl#
gfo-owl
http://www.onto-med.de/ontologies/gfo.owl#
ontologies
http://onto.eva.mpg.de/ontologies/
owl
http://www.w3.org/2002/07/owl#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
sumo-owl
http://reliant.teknowledge.com/DAML/SUMO.owl#
xsd
http://www.w3.org/2001/XMLSchema#

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni.