An ontology for MBGD

IRI:
http://purl.jp/bio/11/mbgd
Version IRI:
http://mbgd.genome.ad.jp/ontology/mbgd.2014-10-16.ttl
Current version:
2014-10-16
Previous version:
http://mbgd.genome.ad.jp/ontology/mbgd.20130812.owl (visualise it with LODE)
Imported Ontologies:
http://purl.jp/bio/11/orth (visualise it with LODE)
http://purl.uniprot.org/core/ (visualise it with LODE)
Other visualisation:
Ontology source

Table of Content

  1. Classes
  2. Object Properties
  3. Data Properties
  4. Namespace Declarations

Classes

CDSc back to ToC or Class ToC

IRI: http://purl.jp/bio/11/mbgd#CDS

is defined by
http://purl.jp/bio/11/mbgd
has super-classes
gene

Chromosomec back to ToC or Class ToC

IRI: http://purl.jp/bio/11/mbgd#Chromosome

is defined by
http://purl.jp/bio/11/mbgd
has super-classes
NucSeqc
s o 0000340c

Circularc back to ToC or Class ToC

IRI: http://purl.jp/bio/11/mbgd#Circular

is defined by
http://purl.jp/bio/11/mbgd
is equivalent to
s o 0000988c
has super-classes
shapec

Contigc back to ToC or Class ToC

IRI: http://purl.jp/bio/11/mbgd#Contig

is defined by
http://purl.jp/bio/11/mbgd
has super-classes
NucSeqc

Domainc back to ToC or Class ToC

IRI: http://purl.jp/bio/11/mbgd#Domain

is defined by
http://purl.jp/bio/11/mbgd
has super-classes
sequence unit
is in domain of
domainBegindp, domainEnddp, domainPositiondp, domainValuedp
is in range of
domainop

Linearc back to ToC or Class ToC

IRI: http://purl.jp/bio/11/mbgd#Linear

is defined by
http://purl.jp/bio/11/mbgd
is equivalent to
s o 0000987c
has super-classes
shapec

misc_RNAc back to ToC or Class ToC

IRI: http://purl.jp/bio/11/mbgd#misc_RNA

is defined by
http://purl.jp/bio/11/mbgd
has super-classes
gene

Mitochondrionc back to ToC or Class ToC

IRI: http://purl.jp/bio/11/mbgd#Mitochondrion

is defined by
http://purl.jp/bio/11/mbgd
has super-classes
NucSeqc
s o 0001032c

ncRNAc back to ToC or Class ToC

IRI: http://purl.jp/bio/11/mbgd#ncRNA

is defined by
http://purl.jp/bio/11/mbgd
has super-classes
gene

NucSeqc back to ToC or Class ToC

IRI: http://purl.jp/bio/11/mbgd#NucSeq

is defined by
http://purl.jp/bio/11/mbgd
has super-classes
resource
has sub-classes
Chromosomec, Contigc, Mitochondrionc, Plasmidc
is in domain of
geneCountdp, nucLengthdp, nucSeqValuedp
is in range of
genomeop

NucShapec back to ToC or Class ToC

IRI: http://purl.jp/bio/11/mbgd#NucShape

is defined by
http://purl.jp/bio/11/mbgd
has super-classes
resource
s o 0000443c

Plasmidc back to ToC or Class ToC

IRI: http://purl.jp/bio/11/mbgd#Plasmid

is defined by
http://purl.jp/bio/11/mbgd
has super-classes
NucSeqc
s o 0000155c

rRNAc back to ToC or Class ToC

IRI: http://purl.jp/bio/11/mbgd#rRNA

is defined by
http://purl.jp/bio/11/mbgd
has super-classes
gene

snoRNAc back to ToC or Class ToC

IRI: http://purl.jp/bio/11/mbgd#snoRNA

is defined by
http://purl.jp/bio/11/mbgd
has super-classes
gene

tmRNAc back to ToC or Class ToC

IRI: http://purl.jp/bio/11/mbgd#tmRNA

is defined by
http://purl.jp/bio/11/mbgd
has super-classes
gene

tRNAc back to ToC or Class ToC

IRI: http://purl.jp/bio/11/mbgd#tRNA

is defined by
http://purl.jp/bio/11/mbgd
has super-classes
gene

Object Properties

domainop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/11/mbgd#domain

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
cross reference
so has partop
has partop
s i o 000974op
has domain
gene
has range
Domainc

genomeop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/11/mbgd#nucSeq

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
reference
has domain
resource
has range
NucSeqc

gtpsop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/11/mbgd#gtps

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
gene

uniprotop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/11/mbgd#uniprot

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
protein
has range
protein

Data Properties

aaLengthdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/11/mbgd#aaLength

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
geneValuedp
s i o 000041dp
has domain
gene
has range
integer

distdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/11/mbgd#dist

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
group score
has domain
ortholog group
has range
decimal

domainBegindp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/11/mbgd#domainBegin

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
domainPositiondp
s i o 000791dp
has domain
Domainc
has range
integer

domainEnddp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/11/mbgd#domainEnd

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
domainPositiondp
s i o 000792dp
has domain
Domainc
has range
integer

domainPositiondp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/11/mbgd#domainPosition

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
domainValuedp
s i o 000789dp
has sub-properties
domainBegindp, domainEnddp
has domain
Domainc
has range
integer

domainValuedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/11/mbgd#domainValue

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
value
has sub-properties
domainPositiondp
has domain
Domainc
has range
literal

familydp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/11/mbgd#family

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
organismValuedp
has domain
organism
has range
string

funcCategorydp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/11/mbgd#funcCategory

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
group value
has sub-properties
funcCogdp, funcKeggdp, funcMbgddp, funcTigrdp
has domain
ortholog group
has range
string

funcCogdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/11/mbgd#funcCog

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
funcCategorydp
has domain
ortholog group
has range
string

funcKeggdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/11/mbgd#funcKegg

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
funcCategorydp
has domain
ortholog group
has range
string

funcMbgddp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/11/mbgd#funcMbgd

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
funcCategorydp
has domain
ortholog group
has range
string

funcTigrdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/11/mbgd#funcTigr

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
funcCategorydp
has domain
ortholog group
has range
string

geneCountdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/11/mbgd#geneCount

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
nucSeqValuedp
has domain
NucSeqc
has range
integer

geneValuedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/11/mbgd#geneValue

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
value
has sub-properties
aaLengthdp
has domain
gene
has range
literal

genusdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/11/mbgd#genus

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
organismValuedp
has domain
organism
has range
string

nucLengthdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/11/mbgd#nucLength

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
nucSeqValuedp
s i o 000041dp
has domain
NucSeqc
has range
integer

nucSeqValuedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/11/mbgd#nucSeqValue

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
value
has sub-properties
geneCountdp, nucLengthdp
has domain
NucSeqc
has range
literal

organismValuedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/11/mbgd#organismValue

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
value
has sub-properties
familydp, genusdp, speciesdp, straindp
has domain
organism

scoredp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/11/mbgd#score

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
group score
has domain
ortholog group
has range
decimal

speciesdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/11/mbgd#species

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
organismValuedp
has domain
organism
has range
string

straindp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/11/mbgd#strain

is defined by
http://purl.jp/bio/11/mbgd
has super-properties
organismValuedp
has domain
organism
has range
string

Namespace Declarations back to ToC

default namespace
http://purl.jp/bio/11/mbgd#
11
http://purl.jp/bio/11/
core
http://purl.uniprot.org/core/
obo
http://purl.obolibrary.org/obo/
ontology
http://mbgd.genome.ad.jp/ontology/
orth
http://purl.jp/bio/11/orth#
owl
http://www.w3.org/2002/07/owl#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
resource
http://semanticscience.org/resource/
terms
http://purl.org/dc/terms/
xsd
http://www.w3.org/2001/XMLSchema#

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni.