The Biological Collections Ontology

Archaeologicalbotanical specimens are typically collections of biological material generated as part of an archaeological collecting process that is separate from the type of processes that would yield other kinds of samples or collections of samples. This process almost always entails collecting in-situ from archaeological sites where there is evidence of past human material culture.

has super-classes: Preserved Specimen^c

assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000070

is equivalent to: achieves_planned_objective^op some assay objective^c
has super-classes: planned process^c; achieves_planned_objective^op some assay objective^c; has_specified_input^op some material entity^c and (has role^op some evaluant role^c); realizes^op some evaluant role^c; has_specified_output^op some data item^c and (is about^op some material entity^c and (has role^op some evaluant role^c))
has sub-classes: cytometry assay^c, imaging assay^c, sequencing assay^c
is disjoint with: data transformation^c

assay objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000441

has super-classes: objective specification^c

astronomical body part^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000813

has super-classes: environmental feature^c
has sub-classes: construction^c

B cell^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000236

has super-classes: lymphocyte^c

Bacteria^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: cellular organisms^c; organism^c

base ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000001

has super-classes: ontology module^c

behavioral quality^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000186

has super-classes: organismal quality^c
has sub-classes: handedness^c

Bilateria^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33213

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Eumetazoa^c
has sub-classes: Deuterostomia^c

Boreoeutheria^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1437010

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Eutheria^c
has sub-classes: Euarchontoglires^c

bridge ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000004

has super-classes: ontology module^c
has sub-classes: taxonomic bridge ontology module^c

CART^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000749

has super-classes: decision tree building data transformation^c
has members: GenePattern CARTⁿⁱ

catalytic activity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0003824

has super-classes: GO:molecular_function^c
has sub-classes: RNA-directed DNA polymerase activity^c

Catarrhini^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9526

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Simiiformes^c
has sub-classes: Hominoidea^c

categorical label^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000963

has super-classes: datum label^c
has members: ambidexterousⁿⁱ, left handedⁿⁱ, right handedⁿⁱ

categorical value specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001930

has super-classes: value specification^c
has sub-classes: International Federation of Gynecology and Obstetrics cervical cancer stage value specification^c, International Federation of Gynecology and Obstetrics ovarian cancer stage value specification^c, clinical tumor stage group according to AJCC 7th edition^c, histologic grade according to AJCC 7th edition^c, histologic grade according to the Fuhrman Nuclear Grading System^c, histologic grade for ovarian tumor^c, pathologic distant metastases stage for colon according to AJCC 7th edition^c, pathologic distant metastases stage for kidney according to AJCC 7th edition^c, pathologic distant metastases stage for lung according to AJCC 7th edition^c, pathologic distant metastases stage for ovary according to AJCC 7th edition^c, pathologic lymph node stage for colon and rectum according to AJCC 7th edition^c, pathologic lymph node stage for kidney according to AJCC 7th edition^c, pathologic lymph node stage for lung according to AJCC 7th edition^c, pathologic lymph node stage for ovary according to AJCC 7th edition^c, pathologic primary tumor stage for colon and rectum according to AJCC 7th edition^c, pathologic primary tumor stage for kidney according to AJCC 7th edition^c, pathologic primary tumor stage for lung according to AJCC 7th edition^c, pathologic primary tumor stage for ovary according to AJCC 7th edition^c, performance status value specification^c

cell^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000000

has super-classes: material entity^c
has sub-classes: experimentally modified cell in vitro^c, mononuclear cell^c

cell freezing medium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001912

has super-classes: processed material^c

cellular organisms^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_131567

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has sub-classes: Archaea^c, Bacteria^c, Eukaryota^c

Chordata^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7711

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Deuterostomia^c
has sub-classes: Craniata <chordata>^c

class discovery data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200175

is equivalent to: (has_specified_output^op some clustered data set^c) or (achieves_planned_objective^op some class discovery objective^c)
has super-classes: data transformation^c
has sub-classes: dimensionality reduction^c, hierarchical clustering^c, k-means clustering^c, k-nearest neighbors^c

class discovery objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200178

has super-classes: data transformation objective^c

class prediction data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000663

is equivalent to: (has_specified_output^op some classified data set^c) or (achieves_planned_objective^op some class prediction objective^c)
has super-classes: data transformation^c
has sub-classes: support vector machine^c

class prediction objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200179

has super-classes: data transformation objective^c

classified data set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000023

is equivalent to: is_specified_output_of^op some class prediction data transformation^c
has super-classes: data set^c; is_specified_output_of^op some class prediction data transformation^c

clinical tumor stage group according to AJCC 7th edition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002314

has super-classes: categorical value specification^c
has members: Occult Carcinoma (AJCC 7th)ⁿⁱ, Stage 0 (AJCC 7th)ⁿⁱ, Stage I (AJCC 7th)ⁿⁱ, Stage IIA (AJCC 7th)ⁿⁱ, Stage IIB (AJCC 7th)ⁿⁱ, Stage IIC (AJCC 7th)ⁿⁱ, Stage IIIA (AJCC 7th)ⁿⁱ, Stage IIIB (AJCC 7th)ⁿⁱ, Stage IIIC (AJCC 7th)ⁿⁱ, Stage IVA (AJCC 7th)ⁿⁱ, Stage IVB (AJCC 7th)ⁿⁱ

clustered data set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000648

is equivalent to: is_specified_output_of^op some class discovery data transformation^c
has super-classes: data set^c; is_specified_output_of^op some class discovery data transformation^c

clustered data visualization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200190

has super-classes: data visualization^c; has_specified_input^op only clustered data set^c; has_specified_output^op some dot plot^c or histogram^c or heatmap^c or dendrogram^c or scatter plot^c
has members: GenePattern HeatMapViewer data visualizationⁿⁱ, GenePattern HierarchicalClusteringViewer data visualizationⁿⁱ

collecting specimen from organism^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600005

has super-classes: specimen collection process^c; has_specified_input^op some organism^c

collection of humans^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000027

is equivalent to: single-species collection of organisms^c and (has member^op only Homo sapiens^c) and (has member^op min 2 Homo sapiens^c)
has super-classes: single-species collection of organisms^c; has member^op some Homo sapiens^c

collection of organisms^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000000

May be of the same or different species.

is equivalent to: (has member^op only organism or virus or viroid^c) and (has member^op min 2 organism or virus or viroid^c)
has super-classes: object aggregate^c; organismal entity^c; has member^op some organism or virus or viroid^c
has sub-classes: Taxon^c, single-species collection of organisms^c

collection of specimens^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002076

is equivalent to: material entity^c and (has member^op only specimen^c)
has super-classes: material entity^c

compilation taxonomic inventory process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000056

Authors:: Taxonomic Inventory Metadata Workshop

A compiliation taxonomic inventory process is typically required to document the occurences of taxa of interest over large geospatial areas, or to derive the most comprehensive accounting of presence and absence of taxa of interest in a larger region.

has super-classes: taxonomic inventory process^c

concentration unit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000051

has super-classes: measurement unit label^c
has members: colony forming unit per volumeⁿⁱ, gram per deciliterⁿⁱ, gram per literⁿⁱ, mass percentageⁿⁱ, mass volume percentageⁿⁱ, microgram per literⁿⁱ, micromolarⁿⁱ, milligram per milliliterⁿⁱ, milliliter per literⁿⁱ, millimolarⁿⁱ, molarⁿⁱ, nanomolarⁿⁱ, pHⁿⁱ, picomolarⁿⁱ, volume percentageⁿⁱ

construction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00000070

has super-classes: astronomical body part^c
has sub-classes: human dwelling^c

continuant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000002

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: entity^c
has sub-classes: generically dependent continuant^c, independent continuant^c, specifically dependent continuant^c
is in domain of: participates in^op
is in range of: has participant^op
is disjoint with: occurrent^c

Craniata <chordata>^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_89593

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Chordata^c
has sub-classes: Vertebrata <Metazoa>^c

cross validation objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200188

has super-classes: partitioning objective^c

culture medium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000079

has super-classes: processed material^c

cultured cell^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000010

has super-classes: experimentally modified cell in vitro^c; (is_specified_output_of^op some establishing cell culture^c) or (derives from^op some is_specified_output_of^op some establishing cell culture^c)

cultured cell population^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100060

The extent of a 'cultured cell population' is restricted only in that all cell members must share a propagation history (ie be derived through a common lineage of passages from an initial culture). In being defined in this way, this class can be used to refer to the populations that researchers actually use in the practice of science - ie are the inputs to culturing, experimentation, and sharing. The cells in such populations will be a relatively uniform population as they have experienced similar selective pressures due to their continuous co-propagation. And this population will also have a single passage number, again owing to their common passaging history. Cultured cell populations represent only a collection of cells (ie do not include media, culture dishes, etc), and include populations of cultured unicellular organisms or cultured multicellular organism cells. They can exist under active culture, stored in a quiescent state for future use, or applied experimentally.

has super-classes: processed material^c; has grain^op only cultured cell^c; is_specified_output_of^op some maintaining cell culture^c; has grain^op some cultured cell^c

curation status specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000078

is equivalent to: { ready for release , example to be eventually removed , metadata incomplete , uncurated , pending final vetting , metadata complete , organizational term , requires discussion , to be replaced with external ontology term }
has super-classes: data about an ontology part^c
has members: example to be eventually removedⁿⁱ, incorrect identifier format, replacedⁿⁱ, metadata completeⁿⁱ, metadata incompleteⁿⁱ, organizational termⁿⁱ, pending final vettingⁿⁱ, ready for releaseⁿⁱ, requires discussionⁿⁱ, to be replaced with external ontology termⁿⁱ, uncuratedⁿⁱ

curation subset ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000007

has super-classes: subset ontology module^c

cytometry assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001977

is equivalent to: assay^c and ((realizes^op some evaluant role^c and (role of^op some cell^c)) and (has_specified_input^op some cell^c and (has role^op some evaluant role^c)))
has super-classes: assay^c; realizes^op some evaluant role^c and (role of^op some cell^c); has_specified_input^op some cell^c and (has role^op some evaluant role^c)

data about an ontology part^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000102

has super-classes: data item^c
has sub-classes: curation status specification^c, db xref^c, definition^c, denotator type^c, obsolescence reason specification^c, ontology module^c, subset^c, synonym^c, synonym type^c

data format specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000098

has super-classes: directive information entity^c
has members: ACSⁿⁱ, Compensation-MLⁿⁱ, FCSⁿⁱ, Gating-MLⁿⁱ, OWLⁿⁱ, RDFⁿⁱ, Transformation-MLⁿⁱ, XMLⁿⁱ, tarⁿⁱ, zipⁿⁱ

data item^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000027

has super-classes: information content entity^c
has sub-classes: Human Observation^c, Machine Observation^c, data about an ontology part^c, data set^c, identification assertion^c, measurement datum^c

data set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000100

has super-classes: data item^c
has sub-classes: classified data set^c, clustered data set^c

data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200000

is equivalent to: achieves_planned_objective^op some data transformation objective^c
has super-classes: planned process^c; achieves_planned_objective^op some data transformation objective^c; has_specified_input^op only data item^c; realizes^op some concretizes^op some algorithm^c and (has part^op some objective specification^c)
has sub-classes: class discovery data transformation^c, class prediction data transformation^c, decision tree building data transformation^c, partitioning data transformation^c, peak matching^c
is disjoint with: assay^c

data transformation objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200166

has super-classes: objective specification^c
has sub-classes: class discovery objective^c, class prediction objective^c, decision tree induction objective^c, partitioning objective^c

data visualization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200111

has super-classes: planned process^c; has_specified_output^op some graph^c or image^c; has_specified_input^op some data item^c; has_specified_input^op only data item^c; has_specified_output^op only graph^c or image^c
has sub-classes: clustered data visualization^c

datum label^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000009

has super-classes: information content entity^c
has sub-classes: categorical label^c, measurement unit label^c

db xref^c back to ToC or Class ToC

IRI: http://www.geneontology.org/formats/oboInOwl#DbXref

has super-classes: data about an ontology part^c

decision tree building data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000707

is equivalent to: achieves_planned_objective^op some decision tree induction objective^c
has super-classes: data transformation^c; achieves_planned_objective^op some decision tree induction objective^c
has sub-classes: CART^c

decision tree induction objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000704

has super-classes: data transformation objective^c

definition^c back to ToC or Class ToC

IRI: http://www.geneontology.org/formats/oboInOwl#Definition

has super-classes: data about an ontology part^c

dendrogram^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000183

has super-classes: graph^c

denotator type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000409

is equivalent to: { defined class , universal , named class expression }
has super-classes: data about an ontology part^c
has members: defined classⁿⁱ, named class expressionⁿⁱ, universalⁿⁱ

deoxyribonucleic acid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_16991

has super-classes: nucleic acid^c

Deuterostomia^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33511

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Bilateria^c
has sub-classes: Chordata^c

device^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000968

has super-classes: processed material^c; has function^op some function^c
has sub-classes: measurement device^c

diagram^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000309

has super-classes: figure^c
has sub-classes: graph^c

dimensionality reduction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200050

has super-classes: class discovery data transformation^c; (has_specified_output^op some clustered data set^c) and (achieves_planned_objective^op some class discovery objective^c)
has sub-classes: principal components analysis dimensionality reduction^c

Dipnotetrapodomorpha^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1338369

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Sarcopterygii^c
has sub-classes: Tetrapoda^c

directive information entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000033

has super-classes: information content entity^c; is about^op some realizable entity^c
has sub-classes: action specification^c, data format specification^c, objective specification^c, plan specification^c

disposition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000016

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: realizable entity^c
has sub-classes: function^c
is in range of: has disposition^op
is disjoint with: role^c

DNA sequence data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001573

has super-classes: sequence data^c; is about^op some primary structure of DNA macromolecule^c

DNA sequencer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0400103

has super-classes: measurement device^c

document^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000310

has super-classes: information content entity^c
has sub-classes: questionnaire^c

dot plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000037

has super-classes: graph^c

Eastern Cooperative Oncology Group score value specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002357

has super-classes: performance status value specification^c
has members: 0: asymptomaticⁿⁱ, 1: symptomatic but fully ambulatoryⁿⁱ, 2: symptomatic but in bed less than 50% of the dayⁿⁱ, 3: symptomatic in bed more than 50% of the day but not bed riddenⁿⁱ, 4: bed riddenⁿⁱ

editors ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000002

has super-classes: ontology module^c

EL++ ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000020

has super-classes: ontology module subsetted by OWL profile^c

entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000001

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has sub-classes: continuant^c, occurrent^c
is in domain of: denoted by^op
is in range of: denotes^op
is disjoint with: Obsolete Class^c

environmental feature^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00002297

A material entity determines an environmental system when its removal would cause the collapse of that system. For example, a seamount determines a seamount environment, acting as its 'hub'. This class is currently being aligned to the Basic Formal Ontology. Following this alignment, its definition and the definitions of its subclasses will be revised.

has super-classes: material entity^c
has sub-classes: astronomical body part^c

enzyme^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000427

is equivalent to: material entity^c and (ribonucleic acid^c or protein-containing complex^c or protein^c or (has part^op some ribonucleic acid^c) or (has part^op some protein-containing complex^c) or (has part^op some protein^c)) and (has function^op some realized in^op only catalytic activity^c)
has super-classes: material entity^c; has function^op some realized in^op only catalytic activity^c
has sub-classes: reverse transcriptase^c

Epstein Barr virus transformed B cell^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100010

is equivalent to: (is_specified_output_of^op some establishing cell culture^c and (has_specified_input^op some Viruses^c)) and (derives from^op only B cell^c)
has super-classes: processed material^c; is_specified_output_of^op some establishing cell culture^c and (has_specified_input^op some Viruses^c)

establishing cell culture^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600036

A 'cell culture' as used here referes to a new lineage of cells in culture deriving from a single biological source.. New cultures are established through the initial isolation and culturing of cells from an organismal source, or through changes in an existing cell culture or line that result in a new culture with unique characteristics. This can occur through the passaging/selection of a primary culture into a secondary culture or line, or experimental modifications of an existing cell culture or line such as an immortalization process or other stable genetic modification. This class covers establishment of cultures of either multicellular organism cells or unicellular organisms.

has super-classes: material processing^c; has_specified_input^op some culture medium^c; has_specified_output^op some cultured cell population^c; has_specified_input^op some cell^c

Euarchontoglires^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_314146

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Boreoeutheria^c
has sub-classes: Primates^c

Eukaryota^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2759

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: cellular organisms^c; organism^c
has sub-classes: Opisthokonta^c

Eumetazoa^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6072

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Metazoa^c
has sub-classes: Bilateria^c

Euteleostomi^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_117571

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Teleostomi^c
has sub-classes: Sarcopterygii^c

Eutheria^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9347

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Theria <Mammalia>^c
has sub-classes: Boreoeutheria^c

evaluant role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000067

has super-classes: role^c; realized in^op only assay^c; inheres in^op some material entity^c

Event^c back to ToC or Class ToC

IRI: http://rs.tdwg.org/dwc/terms/Event

is defined by: http://rs.tdwg.org/dwc/terms/

An action that occurs at some location during some time.

has super-classes: process^c
has sub-classes: GO:molecular_function^c, planned process^c, process^c

exclusion subset ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000010

has super-classes: subset ontology module^c

experimentally modified cell in vitro^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000578

has super-classes: cell^c; processed material^c
has sub-classes: cultured cell^c

external import ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000011

has super-classes: import ontology module^c

extract^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000423

has super-classes: processed material^c; is_specified_output_of^op some extraction^c
has sub-classes: nucleic acid extract^c

extraction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302884

has super-classes: material component separation^c; achieves_planned_objective^op some separation into different composition objective^c
has sub-classes: nucleic acid extraction^c

figure^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000308

has super-classes: information content entity^c
has sub-classes: diagram^c, image^c

Fossil Specimen^c back to ToC or Class ToC

IRI: http://rs.tdwg.org/dwc/terms/FossilSpecimen

is defined by: http://rs.tdwg.org/dwc/terms/

A preserved specimen that is a fossil.

has super-classes: Preserved Specimen^c

frequency unit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000105

has super-classes: measurement unit label^c
has members: hertzⁿⁱ

function^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000034

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: disposition^c
has sub-classes: measure function^c
is in domain of: function of^op
is in range of: has function^op

GenePattern software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000713

has super-classes: software^c
has members: GenePattern module CARTXValidationⁿⁱ, GenePattern module HeatMapViewerⁿⁱ, GenePattern module HierarchicalClusteringⁿⁱ, GenePattern module HierarchicalClusteringViewerⁿⁱ, GenePattern module KMeansClusteringⁿⁱ, GenePattern module KNNⁿⁱ, GenePattern module KNNXValidationⁿⁱ, GenePattern module PCAⁿⁱ, GenePattern module PeakMatchⁿⁱ, GenePattern module SVMⁿⁱ

generated ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000014

has super-classes: ontology module^c
has sub-classes: template generated ontology module^c

generically dependent continuant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000031

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: continuant^c
has sub-classes: information content entity^c, region^c
is in domain of: is concretized as^op
is in range of: concretizes^op
is disjoint with: independent continuant^c, specifically dependent continuant^c, independent continuant^c, specifically dependent continuant^c

Geological Context^c back to ToC or Class ToC

IRI: http://rs.tdwg.org/dwc/terms/GeologicalContext

is defined by: http://rs.tdwg.org/dwc/terms/

Geological information, such as stratigraphy, that qualifies a region or place.

Gnathostomata <vertebrate>^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7776

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Vertebrata <Metazoa>^c
has sub-classes: Teleostomi^c

GO:molecular_function^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0003674

has super-classes: process^c; Event^c
has sub-classes: catalytic activity^c

graph^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000038

has super-classes: diagram^c
has sub-classes: dendrogram^c, dot plot^c, heatmap^c, histogram^c, scatter plot^c

handedness^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002201

has super-classes: behavioral quality^c
has sub-classes: ambidextrous handedness^c, left handedness^c, right handedness^c

Haplorrhini^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_376913

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Primates^c
has sub-classes: Simiiformes^c

heatmap^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000180

has super-classes: graph^c

hierarchical clustering^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200042

has super-classes: class discovery data transformation^c; (has_specified_output^op some clustered data set^c) and (achieves_planned_objective^op some class discovery objective^c)
has members: GenePattern hierarchical clusteringⁿⁱ

histogram^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000179

has super-classes: graph^c

histologic grade according to AJCC 7th edition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002205

has super-classes: categorical value specification^c
has members: G1: Well differentiatedⁿⁱ, G2: Moderately differentiatedⁿⁱ, G3: Poorly differentiatedⁿⁱ, G4: Undifferentiatedⁿⁱ

histologic grade according to the Fuhrman Nuclear Grading System^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002210

has super-classes: categorical value specification^c
has members: G1 (Fuhrman)ⁿⁱ, G2 (Fuhrman)ⁿⁱ, G3 (Fuhrman)ⁿⁱ, G4 (Fuhrman)ⁿⁱ

histologic grade for ovarian tumor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002215

has super-classes: categorical value specification^c
has sub-classes: histologic grade for ovarian tumor according to a two-tier grading system^c, histologic grade for ovarian tumor according to the World Health Organization^c

histologic grade for ovarian tumor according to a two-tier grading system^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002216

has super-classes: histologic grade for ovarian tumor^c
has members: High grade ovarian tumorⁿⁱ, Low grade ovarian tumorⁿⁱ

histologic grade for ovarian tumor according to the World Health Organization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002219

has super-classes: histologic grade for ovarian tumor^c
has members: G1 (WHO)ⁿⁱ, G2 (WHO)ⁿⁱ, G3 (WHO)ⁿⁱ, G4 (WHO)ⁿⁱ

Hominidae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9604

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Hominoidea^c
has sub-classes: Homininae^c

Homininae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_207598

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Hominidae^c
has sub-classes: Homo^c

Hominoidea^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_314295

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Catarrhini^c
has sub-classes: Hominidae^c

Homo^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9605

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Homininae^c
has sub-classes: Homo sapiens^c

Homo sapiens^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9606

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Homo^c

household^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000024

has super-classes: organismal entity^c; r o 0002321^op some human dwelling^c; (has member^op only Homo sapiens^c) and (has member^op min 1 Homo sapiens^c)
has sub-classes: agricultural household^c

human dwelling^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000744

has super-classes: construction^c

Human Observation^c back to ToC or Class ToC

IRI: http://rs.tdwg.org/dwc/terms/HumanObservation

is defined by: http://rs.tdwg.org/dwc/terms/

An output of a human observation process.

has super-classes: data item^c

human observation process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000065

May be able to use the has agent = has active participant relationship for defining this. May want to work with OBI to define this term in a more general sense for investigations.

has super-classes: observing process^c

Identification^c back to ToC or Class ToC

IRI: http://rs.tdwg.org/dwc/terms/Identification

is defined by: http://rs.tdwg.org/dwc/terms/

A taxonomic determination (e.g., the assignment to a taxon).

has super-classes: taxonomic identification process^c
has sub-classes: taxonomic identification process^c

identification assertion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000084

has super-classes: data item^c; to taxon^op some Taxon^c; of organism^op some organismal entity^c
is in domain of: of organism^op, to taxon^op

image^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000101

has super-classes: figure^c
has sub-classes: photograph^c

imaging assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000185

has super-classes: assay^c; has_specified_output^op some image^c

immaterial entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000141

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: independent continuant^c
is in range of: has 2D boundary^op
is disjoint with: material entity^c

import ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000005

has super-classes: subset ontology module^c
has sub-classes: external import ontology module^c

independent continuant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000004

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: continuant^c
has sub-classes: immaterial entity^c, material entity^c
is in domain of: derives from^op, has disposition^op, has function^op, has role^op, located in^op
is in range of: derives from^op, located in^op, occurs in^op
is disjoint with: specifically dependent continuant^c, generically dependent continuant^c, specifically dependent continuant^c, generically dependent continuant^c

information carrier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000015

is equivalent to: quality^c and (concretizes^op some information content entity^c)
has super-classes: quality^c; concretizes^op some information content entity^c

information content entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000030

has super-classes: generically dependent continuant^c; is about^op some entity^c
has sub-classes: data item^c, datum label^c, directive information entity^c, document^c, figure^c, locality description^c, taxonomic inventory^c, value specification^c
is in domain of: denotes^op, has value specification^op, is about^op
is in range of: denoted by^op

International Federation of Gynecology and Obstetrics cervical cancer stage value specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002326

has super-classes: categorical value specification^c
has members: Stage IA (FIGO)ⁿⁱ, Stage IA1 (FIGO)ⁿⁱ, Stage IA2 (FIGO)ⁿⁱ, Stage IB (FIGO)ⁿⁱ, Stage IB1 (FIGO)ⁿⁱ, Stage IB2 (FIGO)ⁿⁱ, Stage IIA (FIGO)ⁿⁱ, Stage IIA1 (FIGO)ⁿⁱ, Stage IIA2 (FIGO)ⁿⁱ, Stage IIB (FIGO)ⁿⁱ, Stage IIIA (FIGO)ⁿⁱ, Stage IIIB (FIGO)ⁿⁱ, Stage IVA (FIGO)ⁿⁱ, Stage IVB (FIGO)ⁿⁱ

International Federation of Gynecology and Obstetrics ovarian cancer stage value specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002341

has super-classes: categorical value specification^c
has members: Stage 1 (FIGO)ⁿⁱ, Stage 1A (FIGO)ⁿⁱ, Stage 1B (FIGO)ⁿⁱ, Stage 1C (FIGO)ⁿⁱ, Stage 2 (FIGO)ⁿⁱ, Stage 2A (FIGO)ⁿⁱ, Stage 2B (FIGO)ⁿⁱ, Stage 2C (FIGO)ⁿⁱ, Stage 3 (FIGO)ⁿⁱ, Stage 3A (FIGO)ⁿⁱ, Stage 3B (FIGO)ⁿⁱ, Stage 3C (FIGO)ⁿⁱ, Stage 4 (FIGO)ⁿⁱ, Stage Unknown (FIGO)ⁿⁱ

k-means clustering^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200041

has super-classes: partitioning data transformation^c; class discovery data transformation^c; (has_specified_output^op some clustered data set^c) and (achieves_planned_objective^op some class discovery objective^c)
has members: GenePattern k-means clusteringⁿⁱ

k-nearest neighbors^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000727

has super-classes: partitioning data transformation^c; class discovery data transformation^c; (has_specified_output^op some clustered data set^c) and (achieves_planned_objective^op some class discovery objective^c)
has members: GenePattern k-nearest neighborsⁿⁱ

Karnofsky score vaue specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002363

has super-classes: performance status value specification^c
has members: 100: asymptomaticⁿⁱ, 40-50: symptomatic, in bed more than 50% of the day, but not bed riddenⁿⁱ, 60-70: symptomatic but in bed less than 50% of the dayⁿⁱ, 80-90: symptomatic but fully ambulatoryⁿⁱ

leave one out cross validation method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200033

has super-classes: statistical model validation^c
has members: GenePattern LOOCVⁿⁱ

left handedness^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002202

has super-classes: handedness^c

length unit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000001

has super-classes: measurement unit label^c
has members: angstromⁿⁱ, centimeterⁿⁱ, meterⁿⁱ, micrometerⁿⁱ, millimeterⁿⁱ, nanometerⁿⁱ

Living Specimen^c back to ToC or Class ToC

IRI: http://rs.tdwg.org/dwc/terms/LivingSpecimen

is defined by: http://rs.tdwg.org/dwc/terms/

A specimen that is alive.

has super-classes: specimen^c; Material Sample^c

locality description^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000025

Authors:: Biocode Commons Ontology Hackathon

Darwin Core needs to describe both the site and time where some activity occurred as an information content entity (e.g., in recording data from a lab notebook),therefore, we made locality description about a spatial temporal region, rather than a site.

has super-classes: information content entity^c

location^c back to ToC or Class ToC

IRI: http://rs.tdwg.org/dwc/dwctype/Location

has super-classes: spatial region^c
has sub-classes: spatial region^c

lymphocyte^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000542

has super-classes: mononuclear cell^c
has sub-classes: B cell^c

Machine Observation^c back to ToC or Class ToC

IRI: http://rs.tdwg.org/dwc/terms/MachineObservation

is defined by: http://rs.tdwg.org/dwc/terms/

An output of a machine observation process.

has super-classes: data item^c

machine observation process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000066

May want to work with OBI to define this term in a more general sense for investigations.

has super-classes: observing process^c

macromolecule^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_33839

has super-classes: molecular entity^c
has sub-classes: nucleic acid^c, peptide^c

main release ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000003

has super-classes: ontology module^c

maintaining cell culture^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600024

has super-classes: material maintenance^c; has_specified_output^op some cultured cell population^c; has_specified_input^op some cultured cell population^c; has_specified_input^op some culture medium^c or cell freezing medium^c

Mammalia^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_40674

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Amniota^c
has sub-classes: Theria <Mammalia>^c

manufacturer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000835

is equivalent to: (Homo sapiens^c or organization^c) and (has role^op some manufacturer role^c)
has super-classes: material entity^c; has role^op some manufacturer role^c

manufacturer role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000571

has super-classes: role^c; realized in^op only manufacturing^c; inheres in^op some Homo sapiens^c or organization^c

manufacturing^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000457

is equivalent to: achieves_planned_objective^op some manufacturing objective^c
has super-classes: material processing^c; has_specified_input^op some material entity^c; achieves_planned_objective^op some manufacturing objective^c

manufacturing objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000458

has super-classes: material transformation objective^c

mass unit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000002

has super-classes: measurement unit label^c
has members: gramⁿⁱ, kilogramⁿⁱ, microgramⁿⁱ, milligramⁿⁱ, nanogramⁿⁱ, picogramⁿⁱ

material anatomical entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000465

has super-classes: material entity^c

material component separation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600014

is equivalent to: achieves_planned_objective^op some material separation objective^c
has super-classes: material processing^c; has_specified_input^op some material entity^c; achieves_planned_objective^op some material separation objective^c
has sub-classes: extraction^c

material entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000040

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: independent continuant^c
has sub-classes: anatomical cluster^c, cell^c, collection of specimens^c, environmental feature^c, enzyme^c, manufacturer^c, material anatomical entity^c, material information bearer^c, material target of observation^c, molecular entity^c, object^c, object aggregate^c, organism^c, organismal entity^c, organization^c, processed material^c, protein-containing complex^c
is in domain of: has 2D boundary^op
is disjoint with: immaterial entity^c

material information bearer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000178

is equivalent to: material entity^c and (bearer of^op some concretizes^op some information content entity^c)
has super-classes: material entity^c; bearer of^op some concretizes^op some information content entity^c
has sub-classes: photographic print^c

material maintenance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000838

is equivalent to: achieves_planned_objective^op some material maintenance objective^c
has super-classes: planned process^c; achieves_planned_objective^op some material maintenance objective^c
has sub-classes: maintaining cell culture^c

material maintenance objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000806

has super-classes: objective specification^c

material processing^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000094

is equivalent to: achieves_planned_objective^op some material transformation objective^c
has super-classes: planned process^c; achieves_planned_objective^op some material transformation objective^c; has_specified_input^op only material entity^c; has_specified_output^op some processed material^c
has sub-classes: establishing cell culture^c, manufacturing^c, material component separation^c

material sample^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000747

is equivalent to: material entity^c and (has role^op some material sample role^c)
has super-classes: specimen^c; Material Sample^c; has role^op some material sample role^c
has sub-classes: sample from organism^c

Material Sample^c back to ToC or Class ToC

IRI: http://rs.tdwg.org/dwc/terms/MaterialSample

is defined by: http://rs.tdwg.org/dwc/terms/

A physical results of a sampling (or subsampling) event. In biological collections, the material sample is typically collected, and either preserved or destructively processed.

has super-classes: specimen^c
has sub-classes: Living Specimen^c, Preserved Specimen^c, material sample^c, processed specimen^c, specimen^c, specimen from organism^c

material sample role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000740

has super-classes: specimen role^c

material sampling process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000744

is equivalent to: specimen collection process^c and (has_specified_input^op some material entity^c) and (has_specified_output^op some material sample^c)
has super-classes: specimen collection process^c; has_specified_output^op some material sample^c

material separation objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000639

is equivalent to: portioning objective^c or separation into different composition objective^c
has super-classes: material transformation objective^c
has sub-classes: portioning objective^c, separation into different composition objective^c

material supplier role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000018

has super-classes: service provider role^c

material target of observation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000044

Authors:: Biocode Commons Ontology Hackathon

is equivalent to: material entity^c and (b f o 0000087^op some material target of observation role^c)
has super-classes: material entity^c; b f o 0000087^op some material target of observation role^c

material target of observation role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000046

Authors:: Biocode Commons Ontology Hackathon

is equivalent to: role^c and (realized in^op some observing process^c)
has super-classes: role^c; realized in^op some observing process^c

material transformation objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000456

has super-classes: objective specification^c
has sub-classes: manufacturing objective^c, material separation objective^c

measure function^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000453

has super-classes: function^c; realized in^op only has_specified_output^op some measurement datum^c; function of^op some processed material^c

measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000109

has super-classes: data item^c; has value specification^op some value specification^c

measurement device^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000832

is equivalent to: device^c and (has function^op some measure function^c)
has super-classes: device^c; has function^op some measure function^c
has sub-classes: DNA sequencer^c, nucleic acid sequencer^c, protein sequencer^c

Measurement or Fact^c back to ToC or Class ToC

IRI: http://rs.tdwg.org/dwc/terms/MeasurementOrFact

is defined by: http://rs.tdwg.org/dwc/terms/

A measurement of or fact about an rdfs:Resource (http://www.w3.org/2000/01/rdf-schema#Resource).

has super-classes: Obsolete Class^c

measurement unit label^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000003

has super-classes: datum label^c
has sub-classes: concentration unit^c, frequency unit^c, length unit^c, mass unit^c, rate unit^c, substance unit^c, temperature unit^c, time unit^c, volume unit^c, volumetric flow rate unit^c

Metazoa^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33208

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Opisthokonta^c
has sub-classes: Eumetazoa^c

molecular entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_23367

has super-classes: material entity^c
has sub-classes: macromolecule^c

mononuclear cell^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000842

has super-classes: cell^c
has sub-classes: lymphocyte^c

museum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000059

A museum may make its collections available for public viewing through exhibits that may be permanent or temporary. The class museum has meaning that is much broader than biological collecitons. It may be better to import this term from another, more general ontology and create a specific subclass for natural history museum.

has super-classes: organization^c; has part^op some museum collection^c

museum collection^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000031

Authors:: Biocode Commons Ontology Hackathon

Intent is to document biodiversity for research and education. The class museum collection has meaning that is much broader than biological collections. It would probably be better to import this term from another, more general ontology and create a specific subclass for natural history museum collection.

has super-classes: object aggregate^c; has part^op some specimen^c
has sub-classes: organismal museum collection^c

nucleic acid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_33696

has super-classes: macromolecule^c
has sub-classes: deoxyribonucleic acid^c, ribonucleic acid^c

nucleic acid extract^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001010

has super-classes: extract^c; processed specimen^c; (is_specified_output_of^op some nucleic acid extraction^c) and (has role^op some specimen role^c); has grain^op some nucleic acid^c

nucleic acid extraction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0666667

has super-classes: extraction^c; has_specified_input^op some sample from organism^c or organism^c or cultured cell population^c; has_specified_output^op some nucleic acid^c

nucleic acid sequencer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001108

has super-classes: measurement device^c

object^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000030

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: material entity^c

object aggregate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000027

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: material entity^c
has sub-classes: collection of organisms^c, museum collection^c

objective specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000005

has super-classes: directive information entity^c
has sub-classes: assay objective^c, data transformation objective^c, material maintenance objective^c, material transformation objective^c, specimen collection objective^c
is in domain of: objective_achieved_by^op
is in range of: achieves_planned_objective^op

obo basic subset ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000018

has super-classes: ontology module subsetted by expressivity^c

obolete printed observational report^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000006

Authors:: Biocode Commons Ontology Hackathon

has super-classes: obsolete printed report^c

observing process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000003

Authors:: Biocode Commons Ontology Hackathon

An observing process is distinguished from a specimen collecting process in by having an information content entity as an output rather than a specimen. The information artifact may be written or recorded or just be stored in someone's head (specifically depenedent upon that person). In the context of a taxonomic inventory, an observing process may be called a sighting, which is an ad hoc reporting of, typically, a single taxon occurrence, usually motivated by rarity, individual interest in the taxon, or atypicality of circumstances.

has super-classes: planned process^c; has_specified_output^op some information content entity^c; has_specified_input^op some material entity^c
has sub-classes: human observation process^c, machine observation process^c, taxonomic inventory process^c

obsolescence reason specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000225

is equivalent to: { failed exploratory term , term split , placeholder removed , terms merged , term imported }
has super-classes: data about an ontology part^c
has members: failed exploratory termⁿⁱ, otherⁿⁱ, placeholder removedⁿⁱ, term importedⁿⁱ, term splitⁿⁱ, terms mergedⁿⁱ

obsolete being there process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000004

This term was originally developed at the Semantics of Biodiversity workshop in 5/2012. It is no longer needed for the BCO.

has super-classes: Obsolete Class^c

Obsolete Class^c back to ToC or Class ToC

IRI: http://www.geneontology.org/formats/oboInOwl#ObsoleteClass

has super-classes: thing^c
has sub-classes: Measurement or Fact^c, Resource Relationship^c, obsolete being there process^c, obsolete collecting process^c, obsolete darwin core class^c, obsolete data sample^c, obsolete data sampling process^c, obsolete dependent continuant^c, obsolete evidence role^c, obsolete fossil specimen^c, obsolete institution^c, obsolete living specimen^c, obsolete locality description^c, obsolete material sample^c, obsolete material sample role^c, obsolete material sampling process^c, obsolete material target of observation^c, obsolete material target of observation role^c, obsolete museum collection^c, obsolete museum collection entity^c, obsolete observing process^c, obsolete organism or virus or viroid^c, obsolete organismal museum collection^c, obsolete persistent evidence role^c, obsolete physical extraction process^c, obsolete preserved specimen^c, obsolete printed report^c, obsolete process that yields a material representation of a material entity^c, obsolete process that yields an information artifact that is a representation of a material entity^c, obsolete protocol governed sampling activity^c, obsolete selecting process^c, obsolete statistical sample^c, obsolete statistical sampling process^c, obsolete submitting process^c, obsolete successful material sampling process^c, obsolete taxonomic identification process^c, obsolete unsuccessful material sampling process^c, vocabulary encoding scheme^c
is disjoint with: entity^c

obsolete collecting process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000002

This term is now redundant and is merged with material sampling process http://purl.obolibrary.org/obo/bco_0000022.

has super-classes: Obsolete Class^c

obsolete darwin core class^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000064

has super-classes: Obsolete Class^c

obsolete data sample^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000037

This term has been deprecated until it is determined whether or not it is needed in the BCO. Should probably be replaced by a term from OBI or IAO.

has super-classes: Obsolete Class^c

obsolete data sampling process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000023

This term has been deprecated until it is determined whether or not it is needed in the BCO. Should probably be replaced by a term from OBI or IAO.

has super-classes: Obsolete Class^c

obsolete dependent continuant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000005

has super-classes: Obsolete Class^c

obsolete evidence role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000000

Will be replaced by an external ontology class.

has super-classes: Obsolete Class^c

obsolete fossil specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000061

has super-classes: Obsolete Class^c

obsolete institution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000033

Replaced by OBI organization. Request institution as synonym in OBI.

has super-classes: Obsolete Class^c

obsolete living specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000062

has super-classes: Obsolete Class^c

obsolete locality description^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000025

Authors:: Biocode Commons Ontology Hackathon

has super-classes: Obsolete Class^c

obsolete material sample^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000036

Authors:: Biocode Commons Ontology Hackathon

This term has been replaced by OBI:specimen.

has super-classes: Obsolete Class^c

obsolete material sample role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000026

Authors:: Biocode Commons Ontology Hackathon

This term has been replaced by OBI:specimen role.

has super-classes: Obsolete Class^c

obsolete material sampling process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000022

Authors:: Biocode Commons Ontology Hackathon

This term has been replaced by OBI:specimen collection.

has super-classes: Obsolete Class^c

obsolete material target of observation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000044

Authors:: Biocode Commons Ontology Hackathon

has super-classes: Obsolete Class^c

obsolete material target of observation role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000046

Authors:: Biocode Commons Ontology Hackathon

has super-classes: Obsolete Class^c

obsolete museum collection^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000031

Authors:: Biocode Commons Ontology Hackathon

has super-classes: Obsolete Class^c

obsolete museum collection entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000029

At the GSC14 hackathon in 09/2012, we decided to deprecate this term.

has super-classes: Obsolete Class^c
has sub-classes: obsolete organismal museum collection entity^c

obsolete observing process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000003

Authors:: Biocode Commons Ontology Hackathon

The information artifact may written or recorded or just be stored in someone's head (specifically depenedent upon that person). In the context of a taxonomic inventory, an observing process may be called a sighting, and is an ad hoc reporting of, typically, a single taxon occurrence, usually motivated by rarity, individual interest in the taxon, or atypicality of circumstances.

has super-classes: Obsolete Class^c

obsolete organism or virus or viroid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000035

This terms was replaced by a term imported from CARO. The original diagram only had organsim, but DWC and GOs both need to include viruses and viroids.

has super-classes: Obsolete Class^c

obsolete organismal entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000034

This class is understood to mean: A material entity that is either an organism, a part of an organism, a collection of organisms, or a fossil. The relation 'organismal entity derives from organism' was in the original diagram. Subclasses of organismal entity include organism, and It is not clear if it is valid to that an organism derives from an organism (is the derives from relation reflexive?). At the GSC14 hackathon in 09/2012, we decided to deprecate this term.

has super-classes: obsolete taxonomic identification process^c

obsolete organismal museum collection^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000032

Authors:: Biocode Commons Ontology Hackathon

has super-classes: Obsolete Class^c

obsolete organismal museum collection entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000030

The label for this on the original diagram was 'collection object'. However, not all entities in collections will fit the defition of 'object', so 'collection entity is probably a better name. The relation 'depends on' cannot really be used here. Old BFO has 'inverse depends on', but this is not in the current BFO. See dwc_bfo2_new.owl for the original logical definition. At the GSC14 hackathon in 09/2012, we decided to deprecate this term.

has super-classes: obsolete museum collection entity^c

obsolete persistent evidence role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000001

Could add relation that persistant evidence role is specifically dependent on a museum material samples. Deprecated because we do not need this term. Can use OBI:evidence role. Not clear what it means for an evidence role to persist through time.

has super-classes: Obsolete Class^c

obsolete physical extraction process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000021

Authors:: Biocode Commons Ontology Hackathon

Considered acquisition in OBI, but that is about taking possession. Physical extraction may involve taking pocession, but it may also just involve extraction of something that is already posessed (e.g. of dna from cells).

has super-classes: Obsolete Class^c

obsolete preserved specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000063

has super-classes: Obsolete Class^c

obsolete printed report^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000005

Authors:: Biocode Commons Ontology Hackathon

IAO has the term document, which is defined as "A collection of information content entities intended to be understood together as a whole" and has as examples journal article, patent application, laboratory notebook, and book. IAO also has a term for report, but it is not defined. With this term, we want to describe the physical object that corresponds to some information content entity, together with the information content contained in the document or report. This class may be less important for modeling collection data, but could be important for efforts to get hand written (specifically dependent) reports into an electronic (generically dependent) report, and monitoring that process.

has super-classes: Obsolete Class^c
has sub-classes: obolete printed observational report^c

obsolete process that yields a material representation of a material entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000043

Authors:: Biocode Commons Ontology Hackathon

Includes as output rubbings, casts, photographic prints, audio or video tapes. Needs a better name. Current name is the definition.

has super-classes: Obsolete Class^c

obsolete process that yields an information artifact that is a representation of a material entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000045

Authors:: Biocode Commons Ontology Hackathon

Includes audio recordings and photographs (which are information artifacts). Needs a better name. Current name is the definition.

has super-classes: Obsolete Class^c

obsolete protocol governed sampling activity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000039

If sampling is a OBI planned process, that captures that it is protocal governed.

has super-classes: Obsolete Class^c

obsolete selecting process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000007

Authors:: Biocode Commons Ontology Hackathon

The criteria for selection may be specified in a protocol or may be ad hoc. Should be replaced by OBI:selection, but first OBI needs to fix the definition.

has super-classes: Obsolete Class^c

obsolete statistical sample^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000038

This term has been deprecated until it is determined whether or not it is needed in the BCO. Should probably be replaced by a term from OBI or IAO.

has super-classes: Obsolete Class^c

obsolete statistical sampling process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000024

This term has been deprecated until it is determined whether or not it is needed in the BCO. Should probably be replaced by a term from OBI or IAO.

has super-classes: Obsolete Class^c

obsolete submitting process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000016

Authors:: Biocode Commons Ontology Hackathon

has super-classes: Obsolete Class^c

obsolete successful material sampling process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000027

Do not need this class. By virtue of the existance of the material sample, we know that the sampling process was successful.

has super-classes: Obsolete Class^c

obsolete taxonomic identification process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000042

Authors:: Biocode Commons Ontology Hackathon

has super-classes: Obsolete Class^c
has sub-classes: obsolete organismal entity^c

obsolete unsuccessful material sampling process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco_0000028

Do not need this class. By virtue of the absence of the material sample, we know that the sampling process was unsuccessful.

has super-classes: Obsolete Class^c

Occurrence^c back to ToC or Class ToC

IRI: http://rs.tdwg.org/dwc/terms/Occurrence

is defined by: http://rs.tdwg.org/dwc/terms/

An existence of an Organism (sensu http://rs.tdwg.org/dwc/terms/Organism) at a particular place at a particular time.

occurrent^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000003

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: entity^c
is in domain of: has participant^op, occurs in^op
is in range of: participates in^op
is disjoint with: continuant^c

ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000000

has super-classes: data about an ontology part^c
has sub-classes: base ontology module^c, bridge ontology module^c, editors ontology module^c, generated ontology module^c, main release ontology module^c, reasoned ontology module^c, subset ontology module^c

ontology module subsetted by expressivity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000017

has super-classes: subset ontology module^c
has sub-classes: obo basic subset ontology module^c, ontology module subsetted by OWL profile^c

ontology module subsetted by OWL profile^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000019

has super-classes: ontology module subsetted by expressivity^c
has sub-classes: EL++ ontology module^c

open search taxonomic inventory process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000052

Authors:: Taxonomic Inventory Metadata Workshop

has super-classes: taxonomic inventory process^c

Opisthokonta^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33154

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Eukaryota^c
has sub-classes: Metazoa^c

opportunistic search taxonomic inventory process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000053

Authors:: Taxonomic Inventory Metadata Workshop

This is more typically used to report multiple sightings, where the motivation is to record presence and abundance, rather than for individual anecdotal occurrences that are noteworthy.

has super-classes: taxonomic inventory process^c

organism^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100026

is equivalent to: Viruses^c or Bacteria^c or Archaea^c or Eukaryota^c
has super-classes: material entity^c
has sub-classes: Archaea^c, Bacteria^c, Eukaryota^c, Viruses^c

Organism^c back to ToC or Class ToC

IRI: http://rs.tdwg.org/dwc/terms/Organism

is defined by: http://rs.tdwg.org/dwc/terms/

A particular organism or defined group of organisms considered to be taxonomically homogeneous.

has super-classes: organismal entity^c

organism or virus or viroid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CARO_0001010

has super-classes: organismal entity^c

organismal entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000031

is equivalent to: organism or virus or viroid^c or collection of organisms^c
has super-classes: material entity^c
has sub-classes: Organism^c, collection of organisms^c, household^c, organism or virus or viroid^c
is in range of: of organism^op

organismal museum collection^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000032

Authors:: Biocode Commons Ontology Hackathon

has super-classes: museum collection^c

organismal quality^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001995

has super-classes: physical object quality^c
has sub-classes: behavioral quality^c

organization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000245

has super-classes: material entity^c
has sub-classes: museum^c, regulatory agency^c
has members: AES Chemunexⁿⁱ, Advanced Instruments Inc. (AI Companies)ⁿⁱ, Affymetrixⁿⁱ, Agilentⁿⁱ, Ambionⁿⁱ, Antigenixⁿⁱ, Apogee Flow Systemsⁿⁱ, Applied Biosystemsⁿⁱ, BIO-RADⁿⁱ, Beckman Coulterⁿⁱ, Becton Dickinson (BD Biosciences)ⁿⁱ, Bentley Instrumentsⁿⁱ, Bruker Corporationⁿⁱ, Bruker Daltonicsⁿⁱ, CytoBuoyⁿⁱ, Cytopeiaⁿⁱ, Dako Cytomationⁿⁱ, Exalpha Biologicalⁿⁱ, Exbio Antibodiesⁿⁱ, Helicosⁿⁱ, Illuminaⁿⁱ, Invitrogenⁿⁱ, Li-Corⁿⁱ, Luminexⁿⁱ, Milliporeⁿⁱ, Miltenyi Biotecⁿⁱ, NanoString Technologiesⁿⁱ, Nimblegenⁿⁱ, Pacific Biosciencesⁿⁱ, Partecⁿⁱ, Rocheⁿⁱ, Sysmex Corporation, Kobe, Japanⁿⁱ, Thermoⁿⁱ, Thermo Fisher Scientificⁿⁱ, U.S. Food and Drug Administrationⁿⁱ, Watersⁿⁱ, eBioscienceⁿⁱ

partitioning data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200171

is equivalent to: achieves_planned_objective^op some partitioning objective^c
has super-classes: data transformation^c; achieves_planned_objective^op some partitioning objective^c
has sub-classes: k-means clustering^c, k-nearest neighbors^c, statistical model validation^c

partitioning objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200172

has super-classes: data transformation objective^c
has sub-classes: cross validation objective^c

pathologic distant metastases stage for colon according to AJCC 7th edition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002290

has super-classes: categorical value specification^c
has members: cM0 (colon)ⁿⁱ, cM1 (colon)ⁿⁱ, cM1a (colon)ⁿⁱ, cM1b (colon)ⁿⁱ, pM1 (colon)ⁿⁱ, pM1a (colon)ⁿⁱ, pM1b (colon)ⁿⁱ

pathologic distant metastases stage for kidney according to AJCC 7th edition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002306

has super-classes: categorical value specification^c
has members: cM0 (kidney)ⁿⁱ, cM1 (kidney)ⁿⁱ, pM1 (kidney)ⁿⁱ

pathologic distant metastases stage for lung according to AJCC 7th edition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002298

has super-classes: categorical value specification^c
has members: cM0 (lung)ⁿⁱ, cM1 (lung)ⁿⁱ, cM1a (lung)ⁿⁱ, cM1b (lung)ⁿⁱ, pM1 (lung)ⁿⁱ, pM1a (lung)ⁿⁱ, pM1b (lung)ⁿⁱ

pathologic distant metastases stage for ovary according to AJCC 7th edition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002310

has super-classes: categorical value specification^c
has members: cM0 (ovary)ⁿⁱ, cM1 (ovary)ⁿⁱ, pM1 (ovary)ⁿⁱ

pathologic lymph node stage for colon and rectum according to AJCC 7th edition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002270

has super-classes: categorical value specification^c
has members: pN0 (colon)ⁿⁱ, pN1 (colon)ⁿⁱ, pN1a (colon)ⁿⁱ, pN1b (colon)ⁿⁱ, pN1c (colon)ⁿⁱ, pN2 (colon)ⁿⁱ, pN2a (colon)ⁿⁱ, pN2b (colon)ⁿⁱ

pathologic lymph node stage for kidney according to AJCC 7th edition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002284

has super-classes: categorical value specification^c
has members: pN0 (kidney)ⁿⁱ, pN1 (kidney)ⁿⁱ

pathologic lymph node stage for lung according to AJCC 7th edition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002279

has super-classes: categorical value specification^c
has members: pN0 (lung)ⁿⁱ, pN1 (lung)ⁿⁱ, pN2 (lung)ⁿⁱ, pN3 (lung)ⁿⁱ

pathologic lymph node stage for ovary according to AJCC 7th edition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002287

has super-classes: categorical value specification^c
has members: pN0 (ovary)ⁿⁱ, pN1 (ovary)ⁿⁱ

pathologic primary tumor stage for colon and rectum according to AJCC 7th edition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002224

has super-classes: categorical value specification^c
has members: pT0 (colon)ⁿⁱ, pT1 (colon)ⁿⁱ, pT2 (colon)ⁿⁱ, pT3 (colon)ⁿⁱ, pT4a (colon)ⁿⁱ, pT4b (colon)ⁿⁱ, pTis (colon)ⁿⁱ

pathologic primary tumor stage for kidney according to AJCC 7th edition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002243

has super-classes: categorical value specification^c
has members: pT0 (kidney)ⁿⁱ, pT1 (kidney)ⁿⁱ, pT1a (kidney)ⁿⁱ, pT1b (kidney)ⁿⁱ, pT2 (kidney)ⁿⁱ, pT2a (kidney)ⁿⁱ, pT2b (kidney)ⁿⁱ, pT3 (kidney)ⁿⁱ, pT3a (kidney)ⁿⁱ, pT3b (kidney)ⁿⁱ, pT3c (kidney)ⁿⁱ, pT4 (kidney)ⁿⁱ

pathologic primary tumor stage for lung according to AJCC 7th edition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002232

has super-classes: categorical value specification^c
has members: pT0 (lung)ⁿⁱ, pT1 (lung)ⁿⁱ, pT1a (lung)ⁿⁱ, pT1b (lung)ⁿⁱ, pT2 (lung)ⁿⁱ, pT2a (lung)ⁿⁱ, pT2b (lung)ⁿⁱ, pT3 (lung)ⁿⁱ, pT4 (lung)ⁿⁱ, pTis (lung)ⁿⁱ

pathologic primary tumor stage for ovary according to AJCC 7th edition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002256

has super-classes: categorical value specification^c
has members: pT0 (ovary)ⁿⁱ, pT1 (ovary)ⁿⁱ, pT1a (ovary)ⁿⁱ, pT1b (ovary)ⁿⁱ, pT1c (ovary)ⁿⁱ, pT2 (ovary)ⁿⁱ, pT2a (ovary)ⁿⁱ, pT2b (ovary)ⁿⁱ, pT2c (ovary)ⁿⁱ, pT3 (ovary)ⁿⁱ, pT3a (ovary)ⁿⁱ, pT3b (ovary)ⁿⁱ, pT3c (ovary)ⁿⁱ

peak matching^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000726

has super-classes: data transformation^c
has members: GenePattern peak matchingⁿⁱ

peptide^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_16670

has super-classes: macromolecule^c
has sub-classes: protein^c

performance status value specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002356

has super-classes: categorical value specification^c
has sub-classes: Eastern Cooperative Oncology Group score value specification^c, Karnofsky score vaue specification^c

photograph^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000185

has super-classes: image^c

photographic print^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000186

is equivalent to: material entity^c and (bearer of^op some concretizes^op some photograph^c)
has super-classes: material information bearer^c; bearer of^op some concretizes^op some photograph^c

physical object quality^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001241

is defined by: http://purl.obolibrary.org/obo/pato.owl

Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles.

has super-classes: quality^c; quality^c
has sub-classes: organismal quality^c

plan specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000104

2/3/2009 Comment from OBI review. Action specification not well enough specified. Conditional specification not well enough specified. Question whether all plan specifications have objective specifications. Request that IAO either clarify these or change definitions not to use them

has super-classes: directive information entity^c; has part^op some action specification^c; has part^op some objective specification^c
has sub-classes: algorithm^c, protocol^c, software^c

planned process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000011

is equivalent to: realizes^op some concretizes^op some plan specification^c
has super-classes: process^c; Event^c; realizes^op some concretizes^op some plan specification^c
has sub-classes: assay^c, data transformation^c, data visualization^c, material maintenance^c, material processing^c, observing process^c, specimen collection process^c, submitting process^c
is in domain of: achieves_planned_objective^op, has_specified_input^op, has_specified_output^op
is in range of: is_specified_input_of^op, is_specified_output_of^op, objective_achieved_by^op

portioning objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000678

has super-classes: material separation objective^c
is disjoint with: separation into different composition objective^c

Preserved Specimen^c back to ToC or Class ToC

IRI: http://rs.tdwg.org/dwc/terms/PreservedSpecimen

is defined by: http://rs.tdwg.org/dwc/terms/

A specimen that has been preserved.

has super-classes: specimen^c; Material Sample^c
has sub-classes: Fossil Specimen^c, archeobotanical specimen^c, zooarcheological specimen^c

primary structure of DNA macromolecule^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000811

is equivalent to: is concretized as^op some inheres in^op some deoxyribonucleic acid^c
has super-classes: region^c; is concretized as^op some inheres in^op some deoxyribonucleic acid^c

primary structure of RNA molecule^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000845

is equivalent to: is concretized as^op some inheres in^op some ribonucleic acid^c
has super-classes: region^c; is concretized as^op some inheres in^op some ribonucleic acid^c

Primates^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9443

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Euarchontoglires^c
has sub-classes: Haplorrhini^c

principal components analysis dimensionality reduction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200051

has super-classes: dimensionality reduction^c
has members: GenePattern PCAⁿⁱ

process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000015

is defined by: http://purl.obolibrary.org/obo/bfo.owl

is equivalent to: Event^c
has super-classes: Event^c
has sub-classes: Event^c, GO:molecular_function^c, planned process^c
is in domain of: realizes^op
is in range of: realized in^op

processed material^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000047

is equivalent to: material entity^c and (is_specified_output_of^op some material processing^c)
has super-classes: material entity^c; is_specified_output_of^op some material processing^c
has sub-classes: Epstein Barr virus transformed B cell^c, cell freezing medium^c, culture medium^c, cultured cell population^c, device^c, experimentally modified cell in vitro^c, extract^c, processed specimen^c

processed specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000953

A tissue sample that has been sliced and stained for a histology study.

is equivalent to: processed material^c and specimen^c
has super-classes: processed material^c; specimen^c; Material Sample^c
has sub-classes: nucleic acid extract^c

protein^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PR_000000001

has super-classes: peptide^c

protein sequencer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001137

has super-classes: measurement device^c

protein-containing complex^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0032991

has super-classes: material entity^c; has part^op some protein^c

protocol^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000272

has super-classes: plan specification^c

quality^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000019

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: specifically dependent continuant^c
has sub-classes: information carrier^c, physical object quality^c
is in range of: has quality^op
is disjoint with: realizable entity^c

quality^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000001

is defined by: http://purl.obolibrary.org/obo/pato.owl

has sub-classes: physical object quality^c

questionnaire^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001000

has super-classes: document^c
has members: Edingburgh handedness inventoryⁿⁱ

rate unit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000280

has super-classes: measurement unit label^c
has members: count per molarⁿⁱ, count per molar secondⁿⁱ, count per nanomolarⁿⁱ, count per nanomolar secondⁿⁱ

realizable entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000017

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: specifically dependent continuant^c
has sub-classes: disposition^c, role^c
is in domain of: realized in^op
is in range of: realizes^op
is disjoint with: quality^c

reasoned ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000013

has super-classes: ontology module^c

region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/SO_0000001

has super-classes: generically dependent continuant^c
has sub-classes: primary structure of DNA macromolecule^c, primary structure of RNA molecule^c

regulator role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000014

has super-classes: regulatory role^c

regulatory agency^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000450

is equivalent to: organization^c and (has role^op some regulator role^c)
has super-classes: organization^c; has role^op some regulator role^c

regulatory role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000017

has super-classes: role^c
has sub-classes: regulator role^c

Resource Relationship^c back to ToC or Class ToC

IRI: http://rs.tdwg.org/dwc/terms/ResourceRelationship

is defined by: http://rs.tdwg.org/dwc/terms/

A relationship of one rdfs:Resource (http://www.w3.org/2000/01/rdf-schema#Resource) to another.

has super-classes: Obsolete Class^c

restricted search taxonomic inventory process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000051

Authors:: Taxonomic Inventory Metadata Workshop

has super-classes: taxonomic inventory process^c

reverse transcriptase^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000419

is equivalent to: enzyme^c and (has function^op some realized in^op only RNA-directed DNA polymerase activity^c)
has super-classes: enzyme^c; has function^op some realized in^op only RNA-directed DNA polymerase activity^c

ribonucleic acid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_33697

has super-classes: nucleic acid^c

right handedness^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002203

has super-classes: handedness^c

RNA-directed DNA polymerase activity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0003964

has super-classes: catalytic activity^c

role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000023

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: realizable entity^c
has sub-classes: evaluant role^c, manufacturer role^c, material target of observation role^c, regulatory role^c, service provider role^c, specimen role^c
is in range of: has role^op
is disjoint with: disposition^c

sample from organism^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000671

is equivalent to: (is_specified_output_of^op some collecting specimen from organism^c) and (has role^op some material sample role^c)
has super-classes: material sample^c; specimen from organism^c; derives from^op some material anatomical entity^c; is_specified_output_of^op some collecting specimen from organism^c

Sarcopterygii^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_8287

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Euteleostomi^c
has sub-classes: Dipnotetrapodomorpha^c

scatter plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000184

has super-classes: graph^c

separation into different composition objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000681

has super-classes: material separation objective^c
is disjoint with: portioning objective^c

sequence data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000973

has super-classes: measurement datum^c and (is about^op some region^c)
has sub-classes: DNA sequence data^c

sequencing assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600047

is equivalent to: assay^c and ((realizes^op some function^c and (inheres in^op some nucleic acid sequencer^c or protein sequencer^c or DNA sequencer^c)) and (has_specified_input^op some nucleic acid sequencer^c or protein sequencer^c or DNA sequencer^c)) and ((realizes^op some evaluant role^c and (role of^op some nucleic acid extract^c or (has part^op some protein^c))) and (has_specified_input^op some (nucleic acid extract^c or (has part^op some protein^c)) and (has role^op some evaluant role^c))) and (has_specified_output^op some sequence data^c) and (has_specified_output^op some is about^op some region^c)
has super-classes: assay^c; has_specified_input^op some (nucleic acid extract^c or (has part^op some protein^c)) and (has role^op some evaluant role^c); realizes^op some evaluant role^c and (role of^op some nucleic acid extract^c or (has part^op some protein^c)); realizes^op some function^c and (inheres in^op some nucleic acid sequencer^c or protein sequencer^c or DNA sequencer^c); has_specified_input^op some nucleic acid sequencer^c or protein sequencer^c or DNA sequencer^c; has_specified_output^op some sequence data^c

service provider role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000947

has super-classes: role^c; inheres in^op some Homo sapiens^c or organization^c; realized in^op only planned process^c
has sub-classes: material supplier role^c

Simiiformes^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_314293

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Haplorrhini^c
has sub-classes: Catarrhini^c

single layer subset ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000009

has super-classes: subset ontology module^c

single-species collection of organisms^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000018

is equivalent to: (has member^op only organism or virus or viroid^c) and (has member^op only member of^op exactly 1 species as a collection of organisms^c) and (has member^op min 2 organism or virus or viroid^c)
has super-classes: collection of organisms^c
has sub-classes: collection of humans^c, species as a collection of organisms^c

software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000010

has super-classes: plan specification^c
has sub-classes: GenePattern software^c

spatial region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000006

is defined by: http://purl.obolibrary.org/obo/bfo.owl

is equivalent to: location^c
has super-classes: location^c
has sub-classes: location^c

species as a collection of organisms^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000017

This term is neutral with respect to which organisms are included in a species. Membership will depend on the species concept and the taxonomic assertions used to define the species. These criteria must be specified by the user.

has super-classes: single-species collection of organisms^c

species subset ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000012

has super-classes: subset ontology module^c

specifically dependent continuant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000020

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: continuant^c
has sub-classes: quality^c, realizable entity^c
is in domain of: concretizes^op
is in range of: bearer of^op, is concretized as^op
is disjoint with: independent continuant^c, generically dependent continuant^c, independent continuant^c, generically dependent continuant^c

specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100051

is equivalent to: Material Sample^c; material entity^c and (has role^op some specimen role^c)
has super-classes: Material Sample^c
has sub-classes: Living Specimen^c, Material Sample^c, Preserved Specimen^c, material sample^c, processed specimen^c, specimen from organism^c

specimen collection objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000684

has super-classes: objective specification^c

specimen collection process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000659

is equivalent to: planned process^c and (achieves_planned_objective^op some specimen collection objective^c)
has super-classes: planned process^c; achieves_planned_objective^op some specimen collection objective^c; has_specified_output^op some specimen^c; has_specified_input^op some material entity^c
has sub-classes: collecting specimen from organism^c, material sampling process^c

specimen from organism^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001479

is equivalent to: (has role^op some specimen role^c) and (derives from^op some material anatomical entity^c or anatomical cluster^c)
has super-classes: specimen^c; Material Sample^c; derives from^op some material anatomical entity^c or anatomical cluster^c
has sub-classes: sample from organism^c

specimen role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000112

has super-classes: role^c; inheres in^op some material entity^c and (is_specified_output_of^op some specimen collection process^c)
has sub-classes: material sample role^c

statistical model validation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000792

is equivalent to: achieves_planned_objective^op some cross validation objective^c
has super-classes: partitioning data transformation^c; achieves_planned_objective^op some cross validation objective^c
has sub-classes: leave one out cross validation method^c

submitting process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000016

Authors:: Biocode Commons Ontology Hackathon

has super-classes: planned process^c; has_specified_output^op some material entity^c

subset^c back to ToC or Class ToC

IRI: http://www.geneontology.org/formats/oboInOwl#Subset

is equivalent to: { core }
has super-classes: data about an ontology part^c
has members: coreⁿⁱ

subset ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000006

has super-classes: ontology module^c
has sub-classes: analysis subset ontology module^c, curation subset ontology module^c, exclusion subset ontology module^c, import ontology module^c, ontology module subsetted by expressivity^c, single layer subset ontology module^c, species subset ontology module^c

substance unit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000006

has super-classes: measurement unit label^c
has members: micromoleⁿⁱ, nanomoleⁿⁱ, picomoleⁿⁱ

support vector machine^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000700

has super-classes: class prediction data transformation^c; achieves_planned_objective^op some class prediction objective^c
has members: GenePattern SVMⁿⁱ

synonym^c back to ToC or Class ToC

IRI: http://www.geneontology.org/formats/oboInOwl#Synonym

has super-classes: data about an ontology part^c

synonym type^c back to ToC or Class ToC

IRI: http://www.geneontology.org/formats/oboInOwl#SynonymType

has super-classes: data about an ontology part^c

Taxon^c back to ToC or Class ToC

IRI: http://rs.tdwg.org/dwc/terms/Taxon

is defined by: http://rs.tdwg.org/dwc/terms/

A group of organisms (sensu http://purl.obolibrary.org/obo/OBI_0100026) considered by taxonomists to form a homogeneous unit.

has super-classes: collection of organisms^c
is in range of: to taxon^op

taxonomic bridge ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000016

has super-classes: bridge ontology module^c

taxonomic identification process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000042

Authors:: Biocode Commons Ontology Hackathon

is equivalent to: Identification^c
has super-classes: Identification^c
has sub-classes: Identification^c

taxonomic inventory^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000048

Authors:: Taxonomic Inventory Metadata Workshop

The biological entities are almost always species and the organismal scope typically a taxon but potentially also an ecologically or functionally defined grouping (e.g. ‘water birds’ or ‘trees’) or other operational unit (e.g. genes). The list would typically contain multiple entities, but may be as short as a single entity or, if a sampling effort focused on a certain taxon yielded no results, even contain none.

is equivalent to: information content entity^c and (is_specified_output_of^op some taxonomic inventory process^c)
has super-classes: information content entity^c; is_specified_output_of^op some taxonomic inventory process^c

taxonomic inventory process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000047

Authors:: Taxonomic Inventory Metadata Workshop

not sure if this should be a type of assay or a type of planned process

is equivalent to: observing process^c and (has_specified_output^op some taxonomic inventory^c)
has super-classes: observing process^c; has_specified_output^op some taxonomic inventory^c
has sub-classes: adventitious taxonomic inventory process^c, compilation taxonomic inventory process^c, open search taxonomic inventory process^c, opportunistic search taxonomic inventory process^c, restricted search taxonomic inventory process^c, trap or sample taxonomic inventory process^c

Teleostomi^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_117570

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Gnathostomata <vertebrate>^c
has sub-classes: Euteleostomi^c

temperature unit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000005

has super-classes: measurement unit label^c
has members: degree Celsiusⁿⁱ, degree Fahrenheitⁿⁱ

template generated ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000015

has super-classes: generated ontology module^c

Tetrapoda^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32523

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Dipnotetrapodomorpha^c
has sub-classes: Amniota^c

Theria <Mammalia>^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32525

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Mammalia^c
has sub-classes: Eutheria^c

time unit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000003

has super-classes: measurement unit label^c
has members: dayⁿⁱ, hourⁿⁱ, minuteⁿⁱ, monthⁿⁱ, secondⁿⁱ, weekⁿⁱ, yearⁿⁱ

trap or sample taxonomic inventory process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000054

Authors:: Taxonomic Inventory Metadata Workshop

Can be highly targeted and or baited (pheromone trap), or general (pitfall). Trap events can either be "triggered" but of long-term deployment, or rigorously temporally specified (left out overnight).

has super-classes: taxonomic inventory process^c

value specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001933

has super-classes: information content entity^c
has sub-classes: categorical value specification^c
is in range of: has value specification^op

Vertebrata <Metazoa>^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7742

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: Craniata <chordata>^c
has sub-classes: Gnathostomata <vertebrate>^c

Viruses^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10239

is defined by: http://purl.obolibrary.org/obo/ncbitaxon.owl

has super-classes: organism^c

vocabulary encoding scheme^c back to ToC or Class ToC

IRI: http://purl.org/dc/dcam/VocabularyEncodingScheme

has super-classes: Obsolete Class^c

volume unit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000095

has super-classes: measurement unit label^c
has members: cubic centimeterⁿⁱ, cubic decimeterⁿⁱ, literⁿⁱ, microliterⁿⁱ, milliliterⁿⁱ, nanoliterⁿⁱ, picoliterⁿⁱ

volumetric flow rate unit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000270

has super-classes: measurement unit label^c
has members: microliters per minuteⁿⁱ

zooarcheological specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/bco.owl/BCO_0000080

Zooarchaeological specimens are typically collections of biological material generated as part of an archaeological collecting process that is separate from the type of processes that would yield other kinds of samples or collections of samples. This process almost always entails collecting in-situ from archaeological sites where there is evidence of past human material culture.

has super-classes: Preserved Specimen^c

Data Properties

Accepted Name Usage
According To
Associated Media
Associated Occurrences
Associated Organisms
Associated References
Associated Sequences
Associated Taxa
Basis of Record
Bed
Behavior
bibliographic citation
Catalog Number
Class
Collection Code
Collection ID
Continent
Coordinate Precision
Coordinate Uncertainty In Meters
Country
Country Code
County
Data Generalizations
Dataset Name
date
Date Identified
Day
Decimal Latitude
Decimal Longitude
Disposition
Dynamic Properties
Earliest Age Or Lowest Stage
Earliest Eon Or Lowest Eonothem
Earliest Epoch Or Lowest Series
Earliest Era Or Lowest Erathem
Earliest Period Or Lowest System
End Day Of Year
Establishment Means
Event Date
Event Remarks
Event Time
Family
Field Notes
Field Number
Footprint Spatial Fit
Footprint SRS
Footprint WKT
Formation
Genus
Geodetic Datum
Georeference Protocol
Georeference Remarks
Georeference Sources
Georeference Verification Status
Georeferenced By
Georeferenced Date
Group
Habitat
Higher Classification
Higher Geography
Highest Biostratigraphic Zone
Identification Qualifier
Identification References
Identification Remarks
Identification Verification Status
Identified By
Individual Count
Information Withheld
Infraspecific Epithet
Institution Code
Institution ID
Island
Island Group
Kingdom
Latest AgeOr Highest Stage
Latest Eon Or Highest Eonothem
Latest Epoch Or Highest Series
Latest Era Or Highest Erathem
Latest Period Or Highest System
Life Stage
Lithostratigraphic Terms
Locality
Location According To
Location Remarks
Lowest Biostratigraphic Zone
Maximum Depth In Meters
Maximum Distance Above Surface In Meters
Maximum Elevation In Meters
Measurement Accuracy
Measurement Determined By
Measurement Determined Date
Measurement Method
Measurement Remarks
Measurement Type
Measurement Unit
Measurement Value
Member
Minimum Depth In Meters
Minimum Distance Above Surface In Meters
Minimum Elevation In Meters
Month
Municipality
Name According To
Name Published In
Name Published In Year
Nomenclatural Code
Nomenclatural Status
Occurrence Remarks
Occurrence Status
Order
Organism Name
Organism Quantity
Organism Quantity Type
Organism Remarks
Organism Scope
Original Name Usage
Other Catalog Numbers
Owner Institution Code
Parent Name Usage
Phylum
Point Radius Spatial Fit
Preparations
Previous Identifications
Record Number
Recorded By
Relationship According To
Relationship Established Date
Relationship Of Resource
Relationship Remarks
Reproductive Condition
Sample Size Unit
Sample Size Value
Sampling Effort
Sampling Protocol
Scientific Name
Scientific Name Authorship
Sex
Specific Epithet
Start Day Of Year
State Province
Subgenus
Taxon Rank
Taxon Remarks
Taxonomic Status
Type Status
Verbatim Coordinate System
Verbatim Coordinates
Verbatim Depth
Verbatim Elevation
Verbatim EventDate
Verbatim Latitude
Verbatim Locality
Verbatim Longitude
Verbatim SRS
Verbatim Taxon Rank
Vernacular Name
Water Body
Year

Accepted Name Usage^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/acceptedNameUsage

is defined by: http://rs.tdwg.org/dwc/terms/

The full name, with authorship and date information if known, of the currently valid (zoological) or accepted (botanical) taxon.

According To^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/accordingTo

is defined by: http://rs.tdwg.org/dwc/terms/

Organizational term to help define related terms. Do not use for data annotation.

has sub-properties: Georeferenced By^dp, Identified By^dp, Location According To^dp, Measurement Determined By^dp, Name According To^dp, Recorded By^dp, Relationship According To^dp

Associated Media^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/associatedMedia

is defined by: http://rs.tdwg.org/dwc/terms/

A list (concatenated and separated) of identifiers (publication, global unique identifier, URI) of media associated with the Occurrence.

Associated Occurrences^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/associatedOccurrences

is defined by: http://rs.tdwg.org/dwc/terms/

A list (concatenated and separated) of identifiers of other Occurrence records and their associations to this Occurrence.

Associated Organisms^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/associatedOrganisms

is defined by: http://rs.tdwg.org/dwc/terms/

A list (concatenated and separated) of identifiers of other Organisms and their associations to this Organism.

Associated References^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/associatedReferences

is defined by: http://rs.tdwg.org/dwc/terms/

A list (concatenated and separated) of identifiers (publication, bibliographic reference, global unique identifier, URI) of literature associated with the Occurrence.

Associated Sequences^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/associatedSequences

is defined by: http://rs.tdwg.org/dwc/terms/

A list (concatenated and separated) of identifiers (publication, global unique identifier, URI) of genetic sequence information associated with the Occurrence.

Associated Taxa^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/associatedTaxa

is defined by: http://rs.tdwg.org/dwc/terms/

A list (concatenated and separated) of identifiers or names of taxa and their associations with the Occurrence.

Basis of Record^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/basisOfRecord

is defined by: http://rs.tdwg.org/dwc/terms/

The specific nature of the data record - a subtype of the dcterms:type. Recommended best practice is to use a controlled vocabulary such as the Darwin Core Type Vocabulary (http://rs.tdwg.org/dwc/terms/type-vocabulary/index.htm).

Bed^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/bed

is defined by: http://rs.tdwg.org/dwc/terms/

The full name of the lithostratigraphic bed from which the cataloged item was collected.

Behavior^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/behavior

is defined by: http://rs.tdwg.org/dwc/terms/

A description of the behavior shown by the subject at the time the Occurrence was recorded. Recommended best practice is to use a controlled vocabulary.

bibliographic citation^dp back to ToC or Data Property ToC

IRI: http://purl.org/dc/terms/bibliographicCitation

Organizational term to help define related terms. Do not use for data annotation with Darwin Core.

has sub-properties: Name Published In^dp

Catalog Number^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/catalogNumber

is defined by: http://rs.tdwg.org/dwc/terms/

An identifier (preferably unique) for the record within the data set or collection.

Class^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/class

is defined by: http://rs.tdwg.org/dwc/terms/

The full scientific name of the class in which the taxon is classified.

Collection Code^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/collectionCode

is defined by: http://rs.tdwg.org/dwc/terms/

The name, acronym, coden, or initialism identifying the collection or data set from which the record was derived.

Collection ID^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/collectionID

is defined by: http://rs.tdwg.org/dwc/terms/

An identifier for the collection or dataset from which the record was derived. For physical specimens, the recommended best practice is to use the identifier in a collections registry such as the Biodiversity Collections Index (http://www.biodiversitycollectionsindex.org/).

Continent^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/continent

is defined by: http://rs.tdwg.org/dwc/terms/

The name of the continent in which the Location occurs. Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names.

Coordinate Precision^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/coordinatePrecision

is defined by: http://rs.tdwg.org/dwc/terms/

A decimal representation of the precision of the coordinates given in the decimalLatitude and decimalLongitude.

Coordinate Uncertainty In Meters^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/coordinateUncertaintyInMeters

is defined by: http://rs.tdwg.org/dwc/terms/

The horizontal distance (in meters) from the given decimalLatitude and decimalLongitude describing the smallest circle containing the whole of the Location. Leave the value empty if the uncertainty is unknown, cannot be estimated, or is not applicable (because there are no coordinates). Zero is not a valid value for this term.

Country^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/country

is defined by: http://rs.tdwg.org/dwc/terms/

The name of the country or major administrative unit in which the Location occurs. Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names.

Country Code^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/countryCode

is defined by: http://rs.tdwg.org/dwc/terms/

The standard code for the country in which the Location occurs. Recommended best practice is to use ISO 3166-1-alpha-2 country codes.

County^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/county

is defined by: http://rs.tdwg.org/dwc/terms/

The full, unabbreviated name of the next smaller administrative region than stateProvince (county, shire, department, etc.) in which the Location occurs.

Data Generalizations^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/dataGeneralizations

is defined by: http://rs.tdwg.org/dwc/terms/

Actions taken to make the shared data less specific or complete than in its original form. Suggests that alternative data of higher quality may be available on request.

Dataset Name^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/datasetName

is defined by: http://rs.tdwg.org/dwc/terms/

The name identifying the data set from which the record was derived.

date^dp back to ToC or Data Property ToC

IRI: http://purl.org/dc/terms/date

Organizational term to help define related terms. Do not use for data annotation with Darwin Core.

has sub-properties: Date Identified^dp, Event Date^dp, Georeferenced Date^dp, Measurement Determined Date^dp, Relationship Established Date^dp

Date Identified^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/dateIdentified

is defined by: http://rs.tdwg.org/dwc/terms/

The date on which the subject was identified as representing the Taxon. Recommended best practice is to use an encoding scheme, such as ISO 8601:2004(E).

has super-properties: date^dp

Day^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/day

is defined by: http://rs.tdwg.org/dwc/terms/

The integer day of the month on which the Event occurred.

Decimal Latitude^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/decimalLatitude

is defined by: http://rs.tdwg.org/dwc/terms/

The geographic latitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic center of a Location. Positive values are north of the Equator, negative values are south of it. Legal values lie between -90 and 90, inclusive.

Decimal Longitude^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/decimalLongitude

is defined by: http://rs.tdwg.org/dwc/terms/

The geographic longitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic center of a Location. Positive values are east of the Greenwich Meridian, negative values are west of it. Legal values lie between -180 and 180, inclusive.

Disposition^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/disposition

is defined by: http://rs.tdwg.org/dwc/terms/

The current state of a specimen with respect to the collection identified in collectionCode or collectionID. Recommended best practice is to use a controlled vocabulary.

Dynamic Properties^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/dynamicProperties

is defined by: http://rs.tdwg.org/dwc/terms/

A list (concatenated and separated) of additional measurements, facts, characteristics, or assertions about the record. Meant to provide a mechanism for structured content such as key-value pairs.

Earliest Age Or Lowest Stage^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/earliestAgeOrLowestStage

is defined by: http://rs.tdwg.org/dwc/terms/

The full name of the earliest possible geochronologic age or lowest chronostratigraphic stage attributable to the stratigraphic horizon from which the cataloged item was collected.

Earliest Eon Or Lowest Eonothem^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/earliestEonOrLowestEonothem

is defined by: http://rs.tdwg.org/dwc/terms/

The full name of the earliest possible geochronologic eon or lowest chrono-stratigraphic eonothem or the informal name ("Precambrian") attributable to the stratigraphic horizon from which the cataloged item was collected.

Earliest Epoch Or Lowest Series^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/earliestEpochOrLowestSeries

is defined by: http://rs.tdwg.org/dwc/terms/

The full name of the earliest possible geochronologic epoch or lowest chronostratigraphic series attributable to the stratigraphic horizon from which the cataloged item was collected.

Earliest Era Or Lowest Erathem^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/earliestEraOrLowestErathem

is defined by: http://rs.tdwg.org/dwc/terms/

The full name of the earliest possible geochronologic era or lowest chronostratigraphic erathem attributable to the stratigraphic horizon from which the cataloged item was collected.

Earliest Period Or Lowest System^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/earliestPeriodOrLowestSystem

is defined by: http://rs.tdwg.org/dwc/terms/

The full name of the earliest possible geochronologic period or lowest chronostratigraphic system attributable to the stratigraphic horizon from which the cataloged item was collected.

End Day Of Year^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/endDayOfYear

is defined by: http://rs.tdwg.org/dwc/terms/

The latest ordinal day of the year on which the Event occurred (1 for January 1, 365 for December 31, except in a leap year, in which case it is 366).

Establishment Means^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/establishmentMeans

is defined by: http://rs.tdwg.org/dwc/terms/

The process by which the biological individual(s) represented in the Occurrence became established at the location. Recommended best practice is to use a controlled vocabulary.

Event Date^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/eventDate

is defined by: http://rs.tdwg.org/dwc/terms/

The date-time or interval during which an Event occurred. For occurrences, this is the date-time when the event was recorded. Not suitable for a time in a geological context. Recommended best practice is to use an encoding scheme, such as ISO 8601:2004(E).

has super-properties: date^dp

Event Remarks^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/eventRemarks

is defined by: http://rs.tdwg.org/dwc/terms/

Comments or notes about the Event.

Event Time^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/eventTime

is defined by: http://rs.tdwg.org/dwc/terms/

The time or interval during which an Event occurred. Recommended best practice is to use an encoding scheme, such as ISO 8601:2004(E).

Family^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/family

is defined by: http://rs.tdwg.org/dwc/terms/

The full scientific name of the family in which the taxon is classified.

Field Notes^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/fieldNotes

is defined by: http://rs.tdwg.org/dwc/terms/

One of a) an indicator of the existence of, b) a reference to (publication, URI), or c) the text of notes taken in the field about the Event.

Field Number^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/fieldNumber

is defined by: http://rs.tdwg.org/dwc/terms/

An identifier given to the event in the field. Often serves as a link between field notes and the Event.

Footprint Spatial Fit^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/footprintSpatialFit

is defined by: http://rs.tdwg.org/dwc/terms/

The ratio of the area of the footprint (footprintWKT) to the area of the true (original, or most specific) spatial representation of the Location. Legal values are 0, greater than or equal to 1, or undefined. A value of 1 is an exact match or 100% overlap. A value of 0 should be used if the given footprint does not completely contain the original representation. The footprintSpatialFit is undefined (and should be left blank) if the original representation is a point and the given is not that same point. If both the original and the given georeference are the same point, the footprintSpatialFit is 1.

Footprint SRS^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/footprintSRS

is defined by: http://rs.tdwg.org/dwc/terms/

A Well-Known Text (WKT) representation of the Spatial Reference System (SRS) for the footprintWKT of the Location. Do not use this term to describe the SRS of the decimalLatitude and decimalLongitude, even if it is the same as for the footprintWKT - use the geodeticDatum instead.

Footprint WKT^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/footprintWKT

is defined by: http://rs.tdwg.org/dwc/terms/

A Well-Known Text (WKT) representation of the shape (footprint, geometry) that defines the Location. A Location may have both a point-radius representation (see decimalLatitude) and a footprint representation, and they may differ from each other.

Formation^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/formation

is defined by: http://rs.tdwg.org/dwc/terms/

The full name of the lithostratigraphic formation from which the cataloged item was collected.

Genus^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/genus

is defined by: http://rs.tdwg.org/dwc/terms/

The full scientific name of the genus in which the taxon is classified.

Geodetic Datum^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/geodeticDatum

is defined by: http://rs.tdwg.org/dwc/terms/

The ellipsoid, geodetic datum, or spatial reference system (SRS) upon which the geographic coordinates given in decimalLatitude and decimalLongitude as based. Recommended best practice is use the EPSG code as a controlled vocabulary to provide an SRS, if known. Otherwise use a controlled vocabulary for the name or code of the geodetic datum, if known. Otherwise use a controlled vocabulary for the name or code of the ellipsoid, if known. If none of these is known, use the value "unknown".

Georeference Protocol^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/georeferenceProtocol

is defined by: http://rs.tdwg.org/dwc/terms/

A description or reference to the methods used to determine the spatial footprint, coordinates, and uncertainties.

Georeference Remarks^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/georeferenceRemarks

is defined by: http://rs.tdwg.org/dwc/terms/

Notes or comments about the spatial description determination, explaining assumptions made in addition or opposition to the those formalized in the method referred to in georeferenceProtocol.

Georeference Sources^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/georeferenceSources

is defined by: http://rs.tdwg.org/dwc/terms/

A list (concatenated and separated) of maps, gazetteers, or other resources used to georeference the Location, described specifically enough to allow anyone in the future to use the same resources.

Georeference Verification Status^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/georeferenceVerificationStatus

is defined by: http://rs.tdwg.org/dwc/terms/

A categorical description of the extent to which the georeference has been verified to represent the best possible spatial description. Recommended best practice is to use a controlled vocabulary.

Georeferenced By^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/georeferencedBy

is defined by: http://rs.tdwg.org/dwc/terms/

A list (concatenated and separated) of names of people, groups, or organizations who determined the georeference (spatial representation) for the Location.

has super-properties: According To^dp

Georeferenced Date^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/georeferencedDate

is defined by: http://rs.tdwg.org/dwc/terms/

The date on which the Location was georeferenced. Recommended best practice is to use an encoding scheme, such as ISO 8601:2004(E).

has super-properties: date^dp

Group^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/group

is defined by: http://rs.tdwg.org/dwc/terms/

The full name of the lithostratigraphic group from which the cataloged item was collected.

Habitat^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/habitat

is defined by: http://rs.tdwg.org/dwc/terms/

A category or description of the habitat in which the Event occurred.

Higher Classification^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/higherClassification

is defined by: http://rs.tdwg.org/dwc/terms/

A list (concatenated and separated) of taxa names terminating at the rank immediately superior to the taxon referenced in the taxon record. Recommended best practice is to order the list starting with the highest rank and separating the names for each rank with a semi-colon (";").

Higher Geography^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/higherGeography

is defined by: http://rs.tdwg.org/dwc/terms/

A list (concatenated and separated) of geographic names less specific than the information captured in the locality term.

Highest Biostratigraphic Zone^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/highestBiostratigraphicZone

is defined by: http://rs.tdwg.org/dwc/terms/

The full name of the highest possible geological biostratigraphic zone of the stratigraphic horizon from which the cataloged item was collected.

Identification Qualifier^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/identificationQualifier

is defined by: http://rs.tdwg.org/dwc/terms/

A brief phrase or a standard term ("cf.", "aff.") to express the determiner's doubts about the Identification.

Identification References^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/identificationReferences

is defined by: http://rs.tdwg.org/dwc/terms/

A list (concatenated and separated) of references (publication, global unique identifier, URI) used in the Identification.

Identification Remarks^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/identificationRemarks

is defined by: http://rs.tdwg.org/dwc/terms/

Comments or notes about the Identification.

Identification Verification Status^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/identificationVerificationStatus

is defined by: http://rs.tdwg.org/dwc/terms/

A categorical indicator of the extent to which the taxonomic identification has been verified to be correct. Recommended best practice is to use a controlled vocabulary such as that used in HISPID/ABCD.

Identified By^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/identifiedBy

is defined by: http://rs.tdwg.org/dwc/terms/

A list (concatenated and separated) of names of people, groups, or organizations who assigned the Taxon to the subject.

has super-properties: According To^dp

Individual Count^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/individualCount

is defined by: http://rs.tdwg.org/dwc/terms/

The number of individuals represented present at the time of the Occurrence.

Information Withheld^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/informationWithheld

is defined by: http://rs.tdwg.org/dwc/terms/

Additional information that exists, but that has not been shared in the given record.

Infraspecific Epithet^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/infraspecificEpithet

is defined by: http://rs.tdwg.org/dwc/terms/

The name of the lowest or terminal infraspecific epithet of the scientificName, excluding any rank designation.

Institution Code^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/institutionCode

is defined by: http://rs.tdwg.org/dwc/terms/

The name (or acronym) in use by the institution having custody of the object(s) or information referred to in the record.

Institution ID^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/institutionID

is defined by: http://rs.tdwg.org/dwc/terms/

An identifier for the institution having custody of the object(s) or information referred to in the record.

Island^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/island

is defined by: http://rs.tdwg.org/dwc/terms/

The name of the island on or near which the Location occurs. Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names.

Island Group^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/islandGroup

is defined by: http://rs.tdwg.org/dwc/terms/

The name of the island group in which the Location occurs. Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names.

Kingdom^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/kingdom

is defined by: http://rs.tdwg.org/dwc/terms/

The full scientific name of the kingdom in which the taxon is classified.

Latest AgeOr Highest Stage^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/latestAgeOrHighestStage

is defined by: http://rs.tdwg.org/dwc/terms/

The full name of the latest possible geochronologic age or highest chronostratigraphic stage attributable to the stratigraphic horizon from which the cataloged item was collected.

Latest Eon Or Highest Eonothem^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/latestEonOrHighestEonothem

is defined by: http://rs.tdwg.org/dwc/terms/

The full name of the latest possible geochronologic eon or highest chrono-stratigraphic eonothem or the informal name ("Precambrian") attributable to the stratigraphic horizon from which the cataloged item was collected.

Latest Epoch Or Highest Series^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/latestEpochOrHighestSeries

is defined by: http://rs.tdwg.org/dwc/terms/

The full name of the latest possible geochronologic epoch or highest chronostratigraphic series attributable to the stratigraphic horizon from which the cataloged item was collected.

Latest Era Or Highest Erathem^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/latestEraOrHighestErathem

is defined by: http://rs.tdwg.org/dwc/terms/

The full name of the latest possible geochronologic era or highest chronostratigraphic erathem attributable to the stratigraphic horizon from which the cataloged item was collected.

Latest Period Or Highest System^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/latestPeriodOrHighestSystem

is defined by: http://rs.tdwg.org/dwc/terms/

The full name of the latest possible geochronologic period or highest chronostratigraphic system attributable to the stratigraphic horizon from which the cataloged item was collected.

Life Stage^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/lifeStage

is defined by: http://rs.tdwg.org/dwc/terms/

The age class or life stage of the biological individual(s) at the time the Occurrence was recorded. Recommended best practice is to use a controlled vocabulary.

Lithostratigraphic Terms^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/lithostratigraphicTerms

is defined by: http://rs.tdwg.org/dwc/terms/

The combination of all litho-stratigraphic names for the rock from which the cataloged item was collected.

Locality^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/locality

is defined by: http://rs.tdwg.org/dwc/terms/

The specific description of the place. Less specific geographic information can be provided in other geographic terms (higherGeography, continent, country, stateProvince, county, municipality, waterBody, island, islandGroup). This term may contain information modified from the original to correct perceived errors or standardize the description.

Location According To^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/locationAccordingTo

is defined by: http://rs.tdwg.org/dwc/terms/

Information about the source of this Location information. Could be a publication (gazetteer), institution, or team of individuals.

has super-properties: According To^dp

Location Remarks^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/locationRemarks

is defined by: http://rs.tdwg.org/dwc/terms/

Comments or notes about the Location.

Lowest Biostratigraphic Zone^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/lowestBiostratigraphicZone

is defined by: http://rs.tdwg.org/dwc/terms/

The full name of the lowest possible geological biostratigraphic zone of the stratigraphic horizon from which the cataloged item was collected.

Maximum Depth In Meters^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/maximumDepthInMeters

is defined by: http://rs.tdwg.org/dwc/terms/

The greater depth of a range of depth below the local surface, in meters.

Maximum Distance Above Surface In Meters^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/maximumDistanceAboveSurfaceInMeters

is defined by: http://rs.tdwg.org/dwc/terms/

The greater distance in a range of distance from a reference surface in the vertical direction, in meters. Use positive values for locations above the surface, negative values for locations below. If depth measures are given, the reference surface is the location given by the depth, otherwise the reference surface is the location given by the elevation.

Maximum Elevation In Meters^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/maximumElevationInMeters

is defined by: http://rs.tdwg.org/dwc/terms/

The upper limit of the range of elevation (altitude, usually above sea level), in meters.

Measurement Accuracy^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/measurementAccuracy

is defined by: http://rs.tdwg.org/dwc/terms/

The description of the potential error associated with the measurementValue.

Measurement Determined By^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/measurementDeterminedBy

is defined by: http://rs.tdwg.org/dwc/terms/

A list (concatenated and separated) of names of people, groups, or organizations who determined the value of the MeasurementOrFact.

has super-properties: According To^dp

Measurement Determined Date^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/measurementDeterminedDate

is defined by: http://rs.tdwg.org/dwc/terms/

The date on which the MeasurementOrFact was made. Recommended best practice is to use an encoding scheme, such as ISO 8601:2004(E).

has super-properties: date^dp

Measurement Method^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/measurementMethod

is defined by: http://rs.tdwg.org/dwc/terms/

A description of or reference to (publication, URI) the method or protocol used to determine the measurement, fact, characteristic, or assertion.

Measurement Remarks^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/measurementRemarks

is defined by: http://rs.tdwg.org/dwc/terms/

Comments or notes accompanying the MeasurementOrFact.

Measurement Type^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/measurementType

is defined by: http://rs.tdwg.org/dwc/terms/

The nature of the measurement, fact, characteristic, or assertion. Recommended best practice is to use a controlled vocabulary.

Measurement Unit^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/measurementUnit

is defined by: http://rs.tdwg.org/dwc/terms/

The units associated with the measurementValue. Recommended best practice is to use the International System of Units (SI).

Measurement Value^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/measurementValue

is defined by: http://rs.tdwg.org/dwc/terms/

The value of the measurement, fact, characteristic, or assertion.

Member^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/member

is defined by: http://rs.tdwg.org/dwc/terms/

The full name of the lithostratigraphic member from which the cataloged item was collected.

Minimum Depth In Meters^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/minimumDepthInMeters

is defined by: http://rs.tdwg.org/dwc/terms/

The lesser depth of a range of depth below the local surface, in meters.

Minimum Distance Above Surface In Meters^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/minimumDistanceAboveSurfaceInMeters

is defined by: http://rs.tdwg.org/dwc/terms/

The lesser distance in a range of distance from a reference surface in the vertical direction, in meters. Use positive values for locations above the surface, negative values for locations below. If depth measures are given, the reference surface is the location given by the depth, otherwise the reference surface is the location given by the elevation.

Minimum Elevation In Meters^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/minimumElevationInMeters

is defined by: http://rs.tdwg.org/dwc/terms/

The lower limit of the range of elevation (altitude, usually above sea level), in meters.

Month^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/month

is defined by: http://rs.tdwg.org/dwc/terms/

The ordinal month in which the Event occurred.

Municipality^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/municipality

is defined by: http://rs.tdwg.org/dwc/terms/

The full, unabbreviated name of the next smaller administrative region than county (city, municipality, etc.) in which the Location occurs. Do not use this term for a nearby named place that does not contain the actual location.

Name According To^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/nameAccordingTo

is defined by: http://rs.tdwg.org/dwc/terms/

The reference to the source in which the specific taxon concept circumscription is defined or implied - traditionally signified by the Latin "sensu" or "sec." (from secundum, meaning "according to"). For taxa that result from identifications, a reference to the keys, monographs, experts and other sources should be given.

has super-properties: According To^dp

Name Published In^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/namePublishedIn

is defined by: http://rs.tdwg.org/dwc/terms/

A reference for the publication in which the scientificName was originally established under the rules of the associated nomenclaturalCode.

has super-properties: bibliographic citation^dp

Name Published In Year^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/namePublishedInYear

is defined by: http://rs.tdwg.org/dwc/terms/

The four-digit year in which the scientificName was published.

Nomenclatural Code^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/nomenclaturalCode

is defined by: http://rs.tdwg.org/dwc/terms/

The nomenclatural code (or codes in the case of an ambiregnal name) under which the scientificName is constructed. Recommended best practice is to use a controlled vocabulary.

Nomenclatural Status^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/nomenclaturalStatus

is defined by: http://rs.tdwg.org/dwc/terms/

The status related to the original publication of the name and its conformance to the relevant rules of nomenclature. It is based essentially on an algorithm according to the business rules of the code. It requires no taxonomic opinion.

Occurrence Remarks^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/occurrenceRemarks

is defined by: http://rs.tdwg.org/dwc/terms/

Comments or notes about the Occurrence.

Occurrence Status^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/occurrenceStatus

is defined by: http://rs.tdwg.org/dwc/terms/

A statement about the presence or absence of a Taxon at a Location. Recommended best practice is to use a controlled vocabulary.

Order^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/order

is defined by: http://rs.tdwg.org/dwc/terms/

The full scientific name of the order in which the taxon is classified.

Organism Name^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/organismName

is defined by: http://rs.tdwg.org/dwc/terms/

A description of the kind of Organism instance. Can be used to indicate whether the Organism instance represents a discrete organism or if it represents a particular type of aggregation. Recommended best practice is to use a controlled vocabulary.

Organism Quantity^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/organismQuantity

is defined by: http://rs.tdwg.org/dwc/terms/

A number or enumeration value for the quantity of organisms.

Organism Quantity Type^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/organismQuantityType

is defined by: http://rs.tdwg.org/dwc/terms/

The type of quantification system used for the quantity of organisms.

Organism Remarks^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/organismRemarks

is defined by: http://rs.tdwg.org/dwc/terms/

Comments or notes about the Organism instance.

Organism Scope^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/organismScope

is defined by: http://rs.tdwg.org/dwc/terms/

A textual name or label assigned to an Organism instance.

Original Name Usage^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/originalNameUsage

is defined by: http://rs.tdwg.org/dwc/terms/

The taxon name, with authorship and date information if known, as it originally appeared when first established under the rules of the associated nomenclaturalCode. The basionym (botany) or basonym (bacteriology) of the scientificName or the senior/earlier homonym for replaced names.

Other Catalog Numbers^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/otherCatalogNumbers

is defined by: http://rs.tdwg.org/dwc/terms/

A list (concatenated and separated) of previous or alternate fully qualified catalog numbers or other human-used identifiers for the same Occurrence, whether in the current or any other data set or collection.

Owner Institution Code^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/ownerInstitutionCode

is defined by: http://rs.tdwg.org/dwc/terms/

The name (or acronym) in use by the institution having ownership of the object(s) or information referred to in the record.

Parent Name Usage^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/parentNameUsage

is defined by: http://rs.tdwg.org/dwc/terms/

The full name, with authorship and date information if known, of the direct, most proximate higher-rank parent taxon (in a classification) of the most specific element of the scientificName.

Phylum^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/phylum

is defined by: http://rs.tdwg.org/dwc/terms/

The full scientific name of the phylum or division in which the taxon is classified.

Point Radius Spatial Fit^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/pointRadiusSpatialFit

is defined by: http://rs.tdwg.org/dwc/terms/

The ratio of the area of the point-radius (decimalLatitude, decimalLongitude, coordinateUncertaintyInMeters) to the area of the true (original, or most specific) spatial representation of the Location. Legal values are 0, greater than or equal to 1, or undefined. A value of 1 is an exact match or 100% overlap. A value of 0 should be used if the given point-radius does not completely contain the original representation. The pointRadiusSpatialFit is undefined (and should be left blank) if the original representation is a point without uncertainty and the given georeference is not that same point (without uncertainty). If both the original and the given georeference are the same point, the pointRadiusSpatialFit is 1.

Preparations^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/preparations

is defined by: http://rs.tdwg.org/dwc/terms/

A list (concatenated and separated) of preparations and preservation methods for a specimen.

Previous Identifications^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/previousIdentifications

is defined by: http://rs.tdwg.org/dwc/terms/

A list (concatenated and separated) of previous assignments of names to the Occurrence.

Record Number^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/recordNumber

is defined by: http://rs.tdwg.org/dwc/terms/

An identifier given to the Occurrence at the time it was recorded. Often serves as a link between field notes and an Occurrence record, such as a specimen collector's number.

Recorded By^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/recordedBy

is defined by: http://rs.tdwg.org/dwc/terms/

A list (concatenated and separated) of names of people, groups, or organizations responsible for recording the original Occurrence. The primary collector or observer, especially one who applies a personal identifier (recordNumber), should be listed first.

has super-properties: According To^dp

Relationship According To^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/relationshipAccordingTo

is defined by: http://rs.tdwg.org/dwc/terms/

The source (person, organization, publication, reference) establishing the relationship between the two resources.

has super-properties: According To^dp

Relationship Established Date^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/relationshipEstablishedDate

is defined by: http://rs.tdwg.org/dwc/terms/

The date-time on which the relationship between the two resources was established. Recommended best practice is to use an encoding scheme, such as ISO 8601:2004(E).

has super-properties: date^dp

Relationship Of Resource^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/relationshipOfResource

is defined by: http://rs.tdwg.org/dwc/terms/

The relationship of the resource identified by relatedResourceID to the subject (optionally identified by the resourceID). Recommended best practice is to use a controlled vocabulary.

Relationship Remarks^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/relationshipRemarks

is defined by: http://rs.tdwg.org/dwc/terms/

Comments or notes about the relationship between the two resources.

Reproductive Condition^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/reproductiveCondition

is defined by: http://rs.tdwg.org/dwc/terms/

The reproductive condition of the biological individual(s) represented in the Occurrence. Recommended best practice is to use a controlled vocabulary.

Sample Size Unit^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/sampleSizeUnit

is defined by: http://rs.tdwg.org/dwc/terms/

The unit of measurement of the size (time duration, length, area, or volume) of a sample in a sampling event.

Sample Size Value^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/sampleSizeValue

is defined by: http://rs.tdwg.org/dwc/terms/

A numeric value for a measurement of the size (time duration, length, area, or volume) of a sample in a sampling event.

Sampling Effort^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/samplingEffort

is defined by: http://rs.tdwg.org/dwc/terms/

The amount of effort expended during an Event.

Sampling Protocol^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/samplingProtocol

is defined by: http://rs.tdwg.org/dwc/terms/

The name of, reference to, or description of the method or protocol used during an Event.

Scientific Name^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/scientificName

is defined by: http://rs.tdwg.org/dwc/terms/

The full scientific name, with authorship and date information if known. When forming part of an Identification, this should be the name in lowest level taxonomic rank that can be determined. This term should not contain identification qualifications, which should instead be supplied in the IdentificationQualifier term.

Scientific Name Authorship^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/scientificNameAuthorship

is defined by: http://rs.tdwg.org/dwc/terms/

The authorship information for the scientificName formatted according to the conventions of the applicable nomenclaturalCode.

Sex^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/sex

is defined by: http://rs.tdwg.org/dwc/terms/

The sex of the biological individual(s) represented in the Occurrence. Recommended best practice is to use a controlled vocabulary.

Specific Epithet^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/specificEpithet

is defined by: http://rs.tdwg.org/dwc/terms/

The name of the first or species epithet of the scientificName.

Start Day Of Year^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/startDayOfYear

is defined by: http://rs.tdwg.org/dwc/terms/

The earliest ordinal day of the year on which the Event occurred (1 for January 1, 365 for December 31, except in a leap year, in which case it is 366).

State Province^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/stateProvince

is defined by: http://rs.tdwg.org/dwc/terms/

The name of the next smaller administrative region than country (state, province, canton, department, region, etc.) in which the Location occurs.

Subgenus^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/subgenus

is defined by: http://rs.tdwg.org/dwc/terms/

The full scientific name of the subgenus in which the taxon is classified. Values should include the genus to avoid homonym confusion.

Taxon Rank^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/taxonRank

is defined by: http://rs.tdwg.org/dwc/terms/

The taxonomic rank of the most specific name in the scientificName. Recommended best practice is to use a controlled vocabulary.

Taxon Remarks^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/taxonRemarks

is defined by: http://rs.tdwg.org/dwc/terms/

Comments or notes about the taxon or name.

Taxonomic Status^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/taxonomicStatus

is defined by: http://rs.tdwg.org/dwc/terms/

The status of the use of the scientificName as a label for a taxon. Requires taxonomic opinion to define the scope of a taxon. Rules of priority then are used to define the taxonomic status of the nomenclature contained in that scope, combined with the experts opinion. It must be linked to a specific taxonomic reference that defines the concept. Recommended best practice is to use a controlled vocabulary.

Type Status^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/typeStatus

is defined by: http://rs.tdwg.org/dwc/terms/

A list (concatenated and separated) of nomenclatural types (type status, typified scientific name, publication) applied to the subject.

Verbatim Coordinate System^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/verbatimCoordinateSystem

is defined by: http://rs.tdwg.org/dwc/terms/

The spatial coordinate system for the verbatimLatitude and verbatimLongitude or the verbatimCoordinates of the Location. Recommended best practice is to use a controlled vocabulary.

Verbatim Coordinates^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/verbatimCoordinates

is defined by: http://rs.tdwg.org/dwc/terms/

The verbatim original spatial coordinates of the Location. The coordinate ellipsoid, geodeticDatum, or full Spatial Reference System (SRS) for these coordinates should be stored in verbatimSRS and the coordinate system should be stored in verbatimCoordinateSystem.

Verbatim Depth^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/verbatimDepth

is defined by: http://rs.tdwg.org/dwc/terms/

The original description of the depth below the local surface.

Verbatim Elevation^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/verbatimElevation

is defined by: http://rs.tdwg.org/dwc/terms/

The original description of the elevation (altitude, usually above sea level) of the Location.

Verbatim EventDate^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/verbatimEventDate

is defined by: http://rs.tdwg.org/dwc/terms/

The verbatim original representation of the date and time information for an Event.

Verbatim Latitude^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/verbatimLatitude

is defined by: http://rs.tdwg.org/dwc/terms/

The verbatim original latitude of the Location. The coordinate ellipsoid, geodeticDatum, or full Spatial Reference System (SRS) for these coordinates should be stored in verbatimSRS and the coordinate system should be stored in verbatimCoordinateSystem.

Verbatim Locality^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/verbatimLocality

is defined by: http://rs.tdwg.org/dwc/terms/

The original textual description of the place.

Verbatim Longitude^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/verbatimLongitude

is defined by: http://rs.tdwg.org/dwc/terms/

The verbatim original longitude of the Location. The coordinate ellipsoid, geodeticDatum, or full Spatial Reference System (SRS) for these coordinates should be stored in verbatimSRS and the coordinate system should be stored in verbatimCoordinateSystem.

Verbatim SRS^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/verbatimSRS

is defined by: http://rs.tdwg.org/dwc/terms/

The ellipsoid, geodetic datum, or spatial reference system (SRS) upon which coordinates given in verbatimLatitude and verbatimLongitude, or verbatimCoordinates are based. Recommended best practice is use the EPSG code as a controlled vocabulary to provide an SRS, if known. Otherwise use a controlled vocabulary for the name or code of the geodetic datum, if known. Otherwise use a controlled vocabulary for the name or code of the ellipsoid, if known. If none of these is known, use the value "unknown".

Verbatim Taxon Rank^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/verbatimTaxonRank

is defined by: http://rs.tdwg.org/dwc/terms/

The taxonomic rank of the most specific name in the scientificName as it appears in the original record.

Vernacular Name^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/vernacularName

is defined by: http://rs.tdwg.org/dwc/terms/

A common or vernacular name.

Water Body^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/waterBody

is defined by: http://rs.tdwg.org/dwc/terms/

The name of the water body in which the Location occurs. Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names.

Year^dp back to ToC or Data Property ToC

IRI: http://rs.tdwg.org/dwc/terms/year

is defined by: http://rs.tdwg.org/dwc/terms/

The four-digit year in which the Event occurred, according to the Common Era Calendar.

Named Individuals

0: asymptomatic
100: asymptomatic
1: symptomatic but fully ambulatory
2: symptomatic but in bed less than 50% of the day
3: symptomatic in bed more than 50% of the day but not bed ridden
40-50: symptomatic, in bed more than 50% of the day, but not bed ridden
4: bed ridden
60-70: symptomatic but in bed less than 50% of the day
80-90: symptomatic but fully ambulatory
ACS
Advanced Instruments Inc. (AI Companies)
AES Chemunex
Affymetrix
Agilent
ambidexterous
Ambion
angstrom
Antigenix
Apogee Flow Systems
Applied Biosystems
axiom holds for all times
Beckman Coulter
Becton Dickinson (BD Biosciences)
Bentley Instruments
BIO-RAD
Bruker Corporation
Bruker Daltonics
centimeter
cM0 (colon)
cM0 (kidney)
cM0 (lung)
cM0 (ovary)
cM1 (colon)
cM1 (kidney)
cM1 (lung)
cM1 (ovary)
cM1a (colon)
cM1a (lung)
cM1b (colon)
cM1b (lung)
colony forming unit per volume
Compensation-ML
core
count per molar
count per molar second
count per nanomolar
count per nanomolar second
cubic centimeter
cubic decimeter
CytoBuoy
Cytopeia
Dako Cytomation
day
defined class
degree Celsius
degree Fahrenheit
eBioscience
Edingburgh handedness inventory
Exalpha Biological
example to be eventually removed
Exbio Antibodies
failed exploratory term
FCS
G1 (Fuhrman)
G1 (WHO)
G1: Well differentiated
G2 (Fuhrman)
G2 (WHO)
G2: Moderately differentiated
G3 (Fuhrman)
G3 (WHO)
G3: Poorly differentiated
G4 (Fuhrman)
G4 (WHO)
G4: Undifferentiated
Gating-ML
GenePattern CART
GenePattern HeatMapViewer data visualization
GenePattern hierarchical clustering
GenePattern HierarchicalClusteringViewer data visualization
GenePattern k-means clustering
GenePattern k-nearest neighbors
GenePattern LOOCV
GenePattern module CARTXValidation
GenePattern module HeatMapViewer
GenePattern module HierarchicalClustering
GenePattern module HierarchicalClusteringViewer
GenePattern module KMeansClustering
GenePattern module KNN
GenePattern module KNNXValidation
GenePattern module PCA
GenePattern module PeakMatch
GenePattern module SVM
GenePattern PCA
GenePattern peak matching
GenePattern SVM
gram
gram per deciliter
gram per liter
Helicos
hertz
High grade ovarian tumor
hour
Illumina
incorrect identifier format, replaced
Invitrogen
kilogram
left handed
Li-Cor
liter
Low grade ovarian tumor
Luminex
mass percentage
mass volume percentage
material entity A
material entity B
material entity C
metadata complete
metadata incomplete
meter
microgram
microgram per liter
microliter
microliters per minute
micrometer
micromolar
micromole
milligram
milligram per milliliter
milliliter
milliliter per liter
millimeter
millimolar
Millipore
Miltenyi Biotec
minute
molar
month
named class expression
nanogram
nanoliter
nanometer
nanomolar
nanomole
NanoString Technologies
Nimblegen
Occult Carcinoma (AJCC 7th)
organizational term
other
OWL
Pacific Biosciences
Partec
pending final vetting
pH
picogram
picoliter
picomolar
picomole
placeholder removed
pM1 (colon)
pM1 (kidney)
pM1 (lung)
pM1 (ovary)
pM1a (colon)
pM1a (lung)
pM1b (colon)
pM1b (lung)
pN0 (colon)
pN0 (kidney)
pN0 (lung)
pN0 (ovary)
pN1 (colon)
pN1 (kidney)
pN1 (lung)
pN1 (ovary)
pN1a (colon)
pN1b (colon)
pN1c (colon)
pN2 (colon)
pN2 (lung)
pN2a (colon)
pN2b (colon)
pN3 (lung)
pT0 (colon)
pT0 (kidney)
pT0 (lung)
pT0 (ovary)
pT1 (colon)
pT1 (kidney)
pT1 (lung)
pT1 (ovary)
pT1a (kidney)
pT1a (lung)
pT1a (ovary)
pT1b (kidney)
pT1b (lung)
pT1b (ovary)
pT1c (ovary)
pT2 (colon)
pT2 (kidney)
pT2 (lung)
pT2 (ovary)
pT2a (kidney)
pT2a (lung)
pT2a (ovary)
pT2b (kidney)
pT2b (lung)
pT2b (ovary)
pT2c (ovary)
pT3 (colon)
pT3 (kidney)
pT3 (lung)
pT3 (ovary)
pT3a (kidney)
pT3a (ovary)
pT3b (kidney)
pT3b (ovary)
pT3c (kidney)
pT3c (ovary)
pT4 (kidney)
pT4 (lung)
pT4a (colon)
pT4b (colon)
pTis (colon)
pTis (lung)
RDF
ready for release
requires discussion
right handed
Roche
second
specimen collection process X
specimen collection process Y
Stage 0 (AJCC 7th)
Stage 1 (FIGO)
Stage 1A (FIGO)
Stage 1B (FIGO)
Stage 1C (FIGO)
Stage 2 (FIGO)
Stage 2A (FIGO)
Stage 2B (FIGO)
Stage 2C (FIGO)
Stage 3 (FIGO)
Stage 3A (FIGO)
Stage 3B (FIGO)
Stage 3C (FIGO)
Stage 4 (FIGO)
Stage I (AJCC 7th)
Stage IA (FIGO)
Stage IA1 (FIGO)
Stage IA2 (FIGO)
Stage IB (FIGO)
Stage IB1 (FIGO)
Stage IB2 (FIGO)
Stage IIA (AJCC 7th)
Stage IIA (FIGO)
Stage IIA1 (FIGO)
Stage IIA2 (FIGO)
Stage IIB (AJCC 7th)
Stage IIB (FIGO)
Stage IIC (AJCC 7th)
Stage IIIA (AJCC 7th)
Stage IIIA (FIGO)
Stage IIIB (AJCC 7th)
Stage IIIB (FIGO)
Stage IIIC (AJCC 7th)
Stage IVA (AJCC 7th)
Stage IVA (FIGO)
Stage IVB (AJCC 7th)
Stage IVB (FIGO)
Stage Unknown (FIGO)
Sysmex Corporation, Kobe, Japan
tar
term imported
term split
terms merged
Thermo
Thermo Fisher Scientific
to be replaced with external ontology term
Transformation-ML
U.S. Food and Drug Administration
uncurated
universal
volume percentage
Waters
week
XML
year
zip

0: asymptomaticⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002361

belongs to: Eastern Cooperative Oncology Group score value specification^c

100: asymptomaticⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002364

belongs to: Karnofsky score vaue specification^c

1: symptomatic but fully ambulatoryⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002362

belongs to: Eastern Cooperative Oncology Group score value specification^c

2: symptomatic but in bed less than 50% of the dayⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002359

belongs to: Eastern Cooperative Oncology Group score value specification^c

3: symptomatic in bed more than 50% of the day but not bed riddenⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002358

belongs to: Eastern Cooperative Oncology Group score value specification^c

40-50: symptomatic, in bed more than 50% of the day, but not bed riddenⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002367

belongs to: Karnofsky score vaue specification^c

4: bed riddenⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002360

belongs to: Eastern Cooperative Oncology Group score value specification^c

60-70: symptomatic but in bed less than 50% of the dayⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002366

belongs to: Karnofsky score vaue specification^c

80-90: symptomatic but fully ambulatoryⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002365

belongs to: Karnofsky score vaue specification^c

ACSⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000321

belongs to: data format specification^c

Advanced Instruments Inc. (AI Companies)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001375

belongs to: organization^c

AES Chemunexⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001428

belongs to: organization^c

Affymetrixⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000462

belongs to: organization^c

Agilentⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000765

belongs to: organization^c

ambidexterousⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000979

belongs to: categorical label^c

Ambionⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000756

belongs to: organization^c

angstromⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000019

belongs to: length unit^c

Antigenixⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001347

belongs to: organization^c

Apogee Flow Systemsⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001312

belongs to: organization^c

Applied Biosystemsⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000776

belongs to: organization^c

axiom holds for all timesⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/RO_0001901

Beckman Coulterⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001372

belongs to: organization^c

Becton Dickinson (BD Biosciences)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001321

belongs to: organization^c

Bentley Instrumentsⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001431

belongs to: organization^c

BIO-RADⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000754

belongs to: organization^c

Bruker Corporationⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000770

belongs to: organization^c

Bruker Daltonicsⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000779

belongs to: organization^c

centimeterⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000015

belongs to: length unit^c

cM0 (colon)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002291

belongs to: pathologic distant metastases stage for colon according to AJCC 7th edition^c

cM0 (kidney)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002307

belongs to: pathologic distant metastases stage for kidney according to AJCC 7th edition^c

cM0 (lung)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002299

belongs to: pathologic distant metastases stage for lung according to AJCC 7th edition^c

cM0 (ovary)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002311

belongs to: pathologic distant metastases stage for ovary according to AJCC 7th edition^c

cM1 (colon)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002292

belongs to: pathologic distant metastases stage for colon according to AJCC 7th edition^c

cM1 (kidney)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002308

belongs to: pathologic distant metastases stage for kidney according to AJCC 7th edition^c

cM1 (lung)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002300

belongs to: pathologic distant metastases stage for lung according to AJCC 7th edition^c

cM1 (ovary)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002312

belongs to: pathologic distant metastases stage for ovary according to AJCC 7th edition^c

cM1a (colon)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002293

belongs to: pathologic distant metastases stage for colon according to AJCC 7th edition^c

cM1a (lung)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002301

belongs to: pathologic distant metastases stage for lung according to AJCC 7th edition^c

cM1b (colon)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002294

belongs to: pathologic distant metastases stage for colon according to AJCC 7th edition^c

cM1b (lung)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002302

belongs to: pathologic distant metastases stage for lung according to AJCC 7th edition^c

colony forming unit per volumeⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000212

belongs to: concentration unit^c

Compensation-MLⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000329

belongs to: data format specification^c

coreⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000224

belongs to: subset^c

count per molarⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000285

belongs to: rate unit^c

count per molar secondⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000282

belongs to: rate unit^c

count per nanomolarⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000284

belongs to: rate unit^c

count per nanomolar secondⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000281

belongs to: rate unit^c

cubic centimeterⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000097

belongs to: volume unit^c

cubic decimeterⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000100

belongs to: volume unit^c

CytoBuoyⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001458

belongs to: organization^c

Cytopeiaⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001224

belongs to: organization^c

Dako Cytomationⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001338

belongs to: organization^c

dayⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000033

belongs to: time unit^c

defined classⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000420

belongs to: denotator type^c

degree Celsiusⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000027

belongs to: temperature unit^c

degree Fahrenheitⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000195

belongs to: temperature unit^c

eBioscienceⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001213

belongs to: organization^c

Edingburgh handedness inventoryⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001004

belongs to: questionnaire^c

Exalpha Biologicalⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001287

belongs to: organization^c

example to be eventually removedⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000002

belongs to: curation status specification^c

Exbio Antibodiesⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001320

belongs to: organization^c

failed exploratory termⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000103

belongs to: obsolescence reason specification^c

FCSⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000327

belongs to: data format specification^c

G1 (Fuhrman)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002211

belongs to: histologic grade according to the Fuhrman Nuclear Grading System^c

G1 (WHO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002220

belongs to: histologic grade for ovarian tumor according to the World Health Organization^c

G1: Well differentiatedⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002206

belongs to: histologic grade according to AJCC 7th edition^c

G2 (Fuhrman)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002212

belongs to: histologic grade according to the Fuhrman Nuclear Grading System^c

G2 (WHO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002221

belongs to: histologic grade for ovarian tumor according to the World Health Organization^c

G2: Moderately differentiatedⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002207

belongs to: histologic grade according to AJCC 7th edition^c

G3 (Fuhrman)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002213

belongs to: histologic grade according to the Fuhrman Nuclear Grading System^c

G3 (WHO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002222

belongs to: histologic grade for ovarian tumor according to the World Health Organization^c

G3: Poorly differentiatedⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002208

belongs to: histologic grade according to AJCC 7th edition^c

G4 (Fuhrman)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002214

belongs to: histologic grade according to the Fuhrman Nuclear Grading System^c

G4 (WHO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002223

belongs to: histologic grade for ovarian tumor according to the World Health Organization^c

G4: Undifferentiatedⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002209

belongs to: histologic grade according to AJCC 7th edition^c

Gating-MLⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000330

belongs to: data format specification^c

GenePattern CARTⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000767

belongs to: CART^c

GenePattern HeatMapViewer data visualizationⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000780

belongs to: clustered data visualization^c

GenePattern hierarchical clusteringⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000755

belongs to: hierarchical clustering^c

GenePattern HierarchicalClusteringViewer data visualizationⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000781

belongs to: clustered data visualization^c

GenePattern k-means clusteringⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000764

belongs to: k-means clustering^c

GenePattern k-nearest neighborsⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000762

belongs to: k-nearest neighbors^c

GenePattern LOOCVⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000763

belongs to: leave one out cross validation method^c

GenePattern module CARTXValidationⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000768

belongs to: GenePattern software^c
has facts: is about^op GenePattern LOOCV; is about^op GenePattern CART

GenePattern module HeatMapViewerⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000782

belongs to: GenePattern software^c
has facts: is about^op GenePattern HeatMapViewer data visualization

GenePattern module HierarchicalClusteringⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000774

belongs to: GenePattern software^c
has facts: is about^op GenePattern hierarchical clustering

GenePattern module HierarchicalClusteringViewerⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000783

belongs to: GenePattern software^c
has facts: is about^op GenePattern HierarchicalClusteringViewer data visualization

GenePattern module KMeansClusteringⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000766

belongs to: GenePattern software^c
has facts: is about^op GenePattern k-means clustering

GenePattern module KNNⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000773

belongs to: GenePattern software^c
has facts: is about^op GenePattern k-nearest neighbors

GenePattern module KNNXValidationⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000771

belongs to: GenePattern software^c

GenePattern module PCAⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000777

belongs to: GenePattern software^c
has facts: is about^op GenePattern PCA

GenePattern module PeakMatchⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000772

belongs to: GenePattern software^c
has facts: is about^op GenePattern peak matching

GenePattern module SVMⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000761

belongs to: GenePattern software^c
has facts: is about^op GenePattern SVM

GenePattern PCAⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000760

belongs to: principal components analysis dimensionality reduction^c

GenePattern peak matchingⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000778

belongs to: peak matching^c

GenePattern SVMⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000775

belongs to: support vector machine^c

gramⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000021

belongs to: mass unit^c

gram per deciliterⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000208

belongs to: concentration unit^c

gram per literⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000175

belongs to: concentration unit^c

Helicosⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000757

belongs to: organization^c

hertzⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000106

belongs to: frequency unit^c

High grade ovarian tumorⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002218

belongs to: histologic grade for ovarian tumor according to a two-tier grading system^c

hourⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000032

belongs to: time unit^c

Illuminaⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000759

belongs to: organization^c

incorrect identifier format, replacedⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/bco.owl/BCO_0000075

belongs to: curation status specification^c

Invitrogenⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001434

belongs to: organization^c

kilogramⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000009

belongs to: mass unit^c

left handedⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000998

belongs to: categorical label^c

Li-Corⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000769

belongs to: organization^c

literⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000099

belongs to: volume unit^c

Low grade ovarian tumorⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002217

belongs to: histologic grade for ovarian tumor according to a two-tier grading system^c

Luminexⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001443

belongs to: organization^c

mass percentageⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000163

belongs to: concentration unit^c

mass volume percentageⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000164

belongs to: concentration unit^c

material entity Aⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000070

has facts: is_specified_input_of^op specimen collection process X

material entity Bⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000071

has facts: is_specified_output_of^op specimen collection process X; is_specified_input_of^op specimen collection process Y

material entity Cⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000072

has facts: is_specified_output_of^op specimen collection process Y

metadata completeⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000120

belongs to: curation status specification^c

metadata incompleteⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000123

belongs to: curation status specification^c

meterⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000008

belongs to: length unit^c

microgramⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000023

belongs to: mass unit^c

microgram per literⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000301

belongs to: concentration unit^c

microliterⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000101

belongs to: volume unit^c

microliters per minuteⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000271

belongs to: volumetric flow rate unit^c

micrometerⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000017

belongs to: length unit^c

micromolarⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000064

belongs to: concentration unit^c

micromoleⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000039

belongs to: substance unit^c

milligramⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000022

belongs to: mass unit^c

milligram per milliliterⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000176

belongs to: concentration unit^c

milliliterⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000098

belongs to: volume unit^c

milliliter per literⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000207

belongs to: concentration unit^c

millimeterⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000016

belongs to: length unit^c

millimolarⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000063

belongs to: concentration unit^c

Milliporeⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001340

belongs to: organization^c

Miltenyi Biotecⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001424

belongs to: organization^c

minuteⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000031

belongs to: time unit^c

molarⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000062

belongs to: concentration unit^c

monthⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000035

belongs to: time unit^c

named class expressionⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000421

belongs to: denotator type^c

nanogramⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000024

belongs to: mass unit^c

nanoliterⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000102

belongs to: volume unit^c

nanometerⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000018

belongs to: length unit^c

nanomolarⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000065

belongs to: concentration unit^c

nanomoleⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000041

belongs to: substance unit^c

NanoString Technologiesⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001860

belongs to: organization^c

Nimblegenⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001855

belongs to: organization^c

Occult Carcinoma (AJCC 7th)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002315

belongs to: clinical tumor stage group according to AJCC 7th edition^c

organizational termⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000121

belongs to: curation status specification^c

otherⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000230

belongs to: obsolescence reason specification^c

OWLⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000332

belongs to: data format specification^c

Pacific Biosciencesⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001856

belongs to: organization^c

Partecⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001355

belongs to: organization^c

pending final vettingⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000125

belongs to: curation status specification^c

pHⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000196

belongs to: concentration unit^c

picogramⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000025

belongs to: mass unit^c

picoliterⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000103

belongs to: volume unit^c

picomolarⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000066

belongs to: concentration unit^c

picomoleⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000042

belongs to: substance unit^c

placeholder removedⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000226

belongs to: obsolescence reason specification^c

pM1 (colon)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002295

belongs to: pathologic distant metastases stage for colon according to AJCC 7th edition^c

pM1 (kidney)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002309

belongs to: pathologic distant metastases stage for kidney according to AJCC 7th edition^c

pM1 (lung)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002303

belongs to: pathologic distant metastases stage for lung according to AJCC 7th edition^c

pM1 (ovary)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002313

belongs to: pathologic distant metastases stage for ovary according to AJCC 7th edition^c

pM1a (colon)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002296

belongs to: pathologic distant metastases stage for colon according to AJCC 7th edition^c

pM1a (lung)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002304

belongs to: pathologic distant metastases stage for lung according to AJCC 7th edition^c

pM1b (colon)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002297

belongs to: pathologic distant metastases stage for colon according to AJCC 7th edition^c

pM1b (lung)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002305

belongs to: pathologic distant metastases stage for lung according to AJCC 7th edition^c

pN0 (colon)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002271

belongs to: pathologic lymph node stage for colon and rectum according to AJCC 7th edition^c

pN0 (kidney)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002285

belongs to: pathologic lymph node stage for kidney according to AJCC 7th edition^c

pN0 (lung)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002280

belongs to: pathologic lymph node stage for lung according to AJCC 7th edition^c

pN0 (ovary)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002288

belongs to: pathologic lymph node stage for ovary according to AJCC 7th edition^c

pN1 (colon)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002272

belongs to: pathologic lymph node stage for colon and rectum according to AJCC 7th edition^c

pN1 (kidney)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002286

belongs to: pathologic lymph node stage for kidney according to AJCC 7th edition^c

pN1 (lung)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002281

belongs to: pathologic lymph node stage for lung according to AJCC 7th edition^c

pN1 (ovary)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002289

belongs to: pathologic lymph node stage for ovary according to AJCC 7th edition^c

pN1a (colon)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002273

belongs to: pathologic lymph node stage for colon and rectum according to AJCC 7th edition^c

pN1b (colon)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002274

belongs to: pathologic lymph node stage for colon and rectum according to AJCC 7th edition^c

pN1c (colon)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002275

belongs to: pathologic lymph node stage for colon and rectum according to AJCC 7th edition^c

pN2 (colon)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002276

belongs to: pathologic lymph node stage for colon and rectum according to AJCC 7th edition^c

pN2 (lung)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002282

belongs to: pathologic lymph node stage for lung according to AJCC 7th edition^c

pN2a (colon)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002277

belongs to: pathologic lymph node stage for colon and rectum according to AJCC 7th edition^c

pN2b (colon)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002278

belongs to: pathologic lymph node stage for colon and rectum according to AJCC 7th edition^c

pN3 (lung)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002283

belongs to: pathologic lymph node stage for lung according to AJCC 7th edition^c

pT0 (colon)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002225

belongs to: pathologic primary tumor stage for colon and rectum according to AJCC 7th edition^c

pT0 (kidney)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002244

belongs to: pathologic primary tumor stage for kidney according to AJCC 7th edition^c

pT0 (lung)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002233

belongs to: pathologic primary tumor stage for lung according to AJCC 7th edition^c

pT0 (ovary)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002257

belongs to: pathologic primary tumor stage for ovary according to AJCC 7th edition^c

pT1 (colon)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002227

belongs to: pathologic primary tumor stage for colon and rectum according to AJCC 7th edition^c

pT1 (kidney)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002245

belongs to: pathologic primary tumor stage for kidney according to AJCC 7th edition^c

pT1 (lung)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002235

belongs to: pathologic primary tumor stage for lung according to AJCC 7th edition^c

pT1 (ovary)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002258

belongs to: pathologic primary tumor stage for ovary according to AJCC 7th edition^c

pT1a (kidney)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002246

belongs to: pathologic primary tumor stage for kidney according to AJCC 7th edition^c

pT1a (lung)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002236

belongs to: pathologic primary tumor stage for lung according to AJCC 7th edition^c

pT1a (ovary)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002259

belongs to: pathologic primary tumor stage for ovary according to AJCC 7th edition^c

pT1b (kidney)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002247

belongs to: pathologic primary tumor stage for kidney according to AJCC 7th edition^c

pT1b (lung)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002237

belongs to: pathologic primary tumor stage for lung according to AJCC 7th edition^c

pT1b (ovary)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002260

belongs to: pathologic primary tumor stage for ovary according to AJCC 7th edition^c

pT1c (ovary)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002261

belongs to: pathologic primary tumor stage for ovary according to AJCC 7th edition^c

pT2 (colon)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002228

belongs to: pathologic primary tumor stage for colon and rectum according to AJCC 7th edition^c

pT2 (kidney)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002248

belongs to: pathologic primary tumor stage for kidney according to AJCC 7th edition^c

pT2 (lung)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002238

belongs to: pathologic primary tumor stage for lung according to AJCC 7th edition^c

pT2 (ovary)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002262

belongs to: pathologic primary tumor stage for ovary according to AJCC 7th edition^c

pT2a (kidney)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002249

belongs to: pathologic primary tumor stage for kidney according to AJCC 7th edition^c

pT2a (lung)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002239

belongs to: pathologic primary tumor stage for lung according to AJCC 7th edition^c

pT2a (ovary)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002263

belongs to: pathologic primary tumor stage for ovary according to AJCC 7th edition^c

pT2b (kidney)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002250

belongs to: pathologic primary tumor stage for kidney according to AJCC 7th edition^c

pT2b (lung)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002240

belongs to: pathologic primary tumor stage for lung according to AJCC 7th edition^c

pT2b (ovary)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002264

belongs to: pathologic primary tumor stage for ovary according to AJCC 7th edition^c

pT2c (ovary)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002265

belongs to: pathologic primary tumor stage for ovary according to AJCC 7th edition^c

pT3 (colon)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002229

belongs to: pathologic primary tumor stage for colon and rectum according to AJCC 7th edition^c

pT3 (kidney)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002251

belongs to: pathologic primary tumor stage for kidney according to AJCC 7th edition^c

pT3 (lung)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002241

belongs to: pathologic primary tumor stage for lung according to AJCC 7th edition^c

pT3 (ovary)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002266

belongs to: pathologic primary tumor stage for ovary according to AJCC 7th edition^c

pT3a (kidney)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002252

belongs to: pathologic primary tumor stage for kidney according to AJCC 7th edition^c

pT3a (ovary)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002267

belongs to: pathologic primary tumor stage for ovary according to AJCC 7th edition^c

pT3b (kidney)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002253

belongs to: pathologic primary tumor stage for kidney according to AJCC 7th edition^c

pT3b (ovary)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002268

belongs to: pathologic primary tumor stage for ovary according to AJCC 7th edition^c

pT3c (kidney)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002254

belongs to: pathologic primary tumor stage for kidney according to AJCC 7th edition^c

pT3c (ovary)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002269

belongs to: pathologic primary tumor stage for ovary according to AJCC 7th edition^c

pT4 (kidney)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002255

belongs to: pathologic primary tumor stage for kidney according to AJCC 7th edition^c

pT4 (lung)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002242

belongs to: pathologic primary tumor stage for lung according to AJCC 7th edition^c

pT4a (colon)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002230

belongs to: pathologic primary tumor stage for colon and rectum according to AJCC 7th edition^c

pT4b (colon)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002231

belongs to: pathologic primary tumor stage for colon and rectum according to AJCC 7th edition^c

pTis (colon)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002226

belongs to: pathologic primary tumor stage for colon and rectum according to AJCC 7th edition^c

pTis (lung)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002234

belongs to: pathologic primary tumor stage for lung according to AJCC 7th edition^c

RDFⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000324

belongs to: data format specification^c

ready for releaseⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000122

belongs to: curation status specification^c

requires discussionⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000428

belongs to: curation status specification^c

right handedⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000958

belongs to: categorical label^c

Rocheⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000758

belongs to: organization^c

secondⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000010

belongs to: time unit^c

specimen collection process Xⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000069

specimen collection process Yⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/BCO_0000073

Stage 0 (AJCC 7th)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002316

belongs to: clinical tumor stage group according to AJCC 7th edition^c

Stage 1 (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002342

belongs to: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification^c

Stage 1A (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002343

belongs to: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification^c

Stage 1B (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002344

belongs to: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification^c

Stage 1C (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002345

belongs to: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification^c

Stage 2 (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002346

belongs to: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification^c

Stage 2A (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002347

belongs to: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification^c

Stage 2B (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002348

belongs to: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification^c

Stage 2C (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002349

belongs to: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification^c

Stage 3 (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002350

belongs to: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification^c

Stage 3A (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002351

belongs to: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification^c

Stage 3B (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002352

belongs to: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification^c

Stage 3C (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002353

belongs to: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification^c

Stage 4 (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002354

belongs to: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification^c

Stage I (AJCC 7th)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002317

belongs to: clinical tumor stage group according to AJCC 7th edition^c

Stage IA (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002327

belongs to: International Federation of Gynecology and Obstetrics cervical cancer stage value specification^c

Stage IA1 (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002328

belongs to: International Federation of Gynecology and Obstetrics cervical cancer stage value specification^c

Stage IA2 (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002329

belongs to: International Federation of Gynecology and Obstetrics cervical cancer stage value specification^c

Stage IB (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002330

belongs to: International Federation of Gynecology and Obstetrics cervical cancer stage value specification^c

Stage IB1 (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002331

belongs to: International Federation of Gynecology and Obstetrics cervical cancer stage value specification^c

Stage IB2 (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002332

belongs to: International Federation of Gynecology and Obstetrics cervical cancer stage value specification^c

Stage IIA (AJCC 7th)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002318

belongs to: clinical tumor stage group according to AJCC 7th edition^c

Stage IIA (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002333

belongs to: International Federation of Gynecology and Obstetrics cervical cancer stage value specification^c

Stage IIA1 (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002334

belongs to: International Federation of Gynecology and Obstetrics cervical cancer stage value specification^c

Stage IIA2 (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002335

belongs to: International Federation of Gynecology and Obstetrics cervical cancer stage value specification^c

Stage IIB (AJCC 7th)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002319

belongs to: clinical tumor stage group according to AJCC 7th edition^c

Stage IIB (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002336

belongs to: International Federation of Gynecology and Obstetrics cervical cancer stage value specification^c

Stage IIC (AJCC 7th)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002320

belongs to: clinical tumor stage group according to AJCC 7th edition^c

Stage IIIA (AJCC 7th)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002321

belongs to: clinical tumor stage group according to AJCC 7th edition^c

Stage IIIA (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002337

belongs to: International Federation of Gynecology and Obstetrics cervical cancer stage value specification^c

Stage IIIB (AJCC 7th)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002322

belongs to: clinical tumor stage group according to AJCC 7th edition^c

Stage IIIB (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002338

belongs to: International Federation of Gynecology and Obstetrics cervical cancer stage value specification^c

Stage IIIC (AJCC 7th)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002323

belongs to: clinical tumor stage group according to AJCC 7th edition^c

Stage IVA (AJCC 7th)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002324

belongs to: clinical tumor stage group according to AJCC 7th edition^c

Stage IVA (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002339

belongs to: International Federation of Gynecology and Obstetrics cervical cancer stage value specification^c

Stage IVB (AJCC 7th)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002325

belongs to: clinical tumor stage group according to AJCC 7th edition^c

Stage IVB (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002340

belongs to: International Federation of Gynecology and Obstetrics cervical cancer stage value specification^c

Stage Unknown (FIGO)ⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002355

belongs to: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification^c

Sysmex Corporation, Kobe, Japanⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000829

belongs to: organization^c

tarⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000326

belongs to: data format specification^c

term importedⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000228

belongs to: obsolescence reason specification^c

term splitⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000229

belongs to: obsolescence reason specification^c

terms mergedⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000227

belongs to: obsolescence reason specification^c

Thermoⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000752

belongs to: organization^c

Thermo Fisher Scientificⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002193

belongs to: organization^c

to be replaced with external ontology termⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000423

belongs to: curation status specification^c

Transformation-MLⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000317

belongs to: data format specification^c

U.S. Food and Drug Administrationⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000901

belongs to: organization^c

uncuratedⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000124

belongs to: curation status specification^c

universalⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000410

belongs to: denotator type^c

volume percentageⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000165

belongs to: concentration unit^c

Watersⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000753

belongs to: organization^c

weekⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000034

belongs to: time unit^c

XMLⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000322

belongs to: data format specification^c

yearⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000036

belongs to: time unit^c

zipⁿⁱ back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000325

belongs to: data format specification^c

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni.

The Biological Collections Ontology

Abstract

Table of Content

Classes

action specificationc back to ToC or Class ToC

adventitious taxonomic inventory processc back to ToC or Class ToC

agricultural householdc back to ToC or Class ToC

algorithmc back to ToC or Class ToC

ambidextrous handednessc back to ToC or Class ToC

Amniotac back to ToC or Class ToC

analysis subset ontology modulec back to ToC or Class ToC

anatomical clusterc back to ToC or Class ToC

Archaeac back to ToC or Class ToC

archeobotanical specimenc back to ToC or Class ToC

assayc back to ToC or Class ToC

assay objectivec back to ToC or Class ToC

astronomical body partc back to ToC or Class ToC

B cellc back to ToC or Class ToC

Bacteriac back to ToC or Class ToC

base ontology modulec back to ToC or Class ToC

behavioral qualityc back to ToC or Class ToC

Bilateriac back to ToC or Class ToC

Boreoeutheriac back to ToC or Class ToC

bridge ontology modulec back to ToC or Class ToC

CARTc back to ToC or Class ToC

catalytic activityc back to ToC or Class ToC

Catarrhinic back to ToC or Class ToC

categorical labelc back to ToC or Class ToC

categorical value specificationc back to ToC or Class ToC

cellc back to ToC or Class ToC

cell freezing mediumc back to ToC or Class ToC

cellular organismsc back to ToC or Class ToC

Chordatac back to ToC or Class ToC

class discovery data transformationc back to ToC or Class ToC

class discovery objectivec back to ToC or Class ToC

class prediction data transformationc back to ToC or Class ToC

class prediction objectivec back to ToC or Class ToC

classified data setc back to ToC or Class ToC

clinical tumor stage group according to AJCC 7th editionc back to ToC or Class ToC

clustered data setc back to ToC or Class ToC

clustered data visualizationc back to ToC or Class ToC

collecting specimen from organismc back to ToC or Class ToC

collection of humansc back to ToC or Class ToC

collection of organismsc back to ToC or Class ToC

collection of specimensc back to ToC or Class ToC

compilation taxonomic inventory processc back to ToC or Class ToC

concentration unitc back to ToC or Class ToC

constructionc back to ToC or Class ToC

continuantc back to ToC or Class ToC

Craniata <chordata>c back to ToC or Class ToC

cross validation objectivec back to ToC or Class ToC

culture mediumc back to ToC or Class ToC

cultured cellc back to ToC or Class ToC

cultured cell populationc back to ToC or Class ToC

curation status specificationc back to ToC or Class ToC

curation subset ontology modulec back to ToC or Class ToC

cytometry assayc back to ToC or Class ToC

data about an ontology partc back to ToC or Class ToC

data format specificationc back to ToC or Class ToC

data itemc back to ToC or Class ToC

data setc back to ToC or Class ToC

data transformationc back to ToC or Class ToC

data transformation objectivec back to ToC or Class ToC

data visualizationc back to ToC or Class ToC

datum labelc back to ToC or Class ToC

db xrefc back to ToC or Class ToC

decision tree building data transformationc back to ToC or Class ToC

decision tree induction objectivec back to ToC or Class ToC

definitionc back to ToC or Class ToC

dendrogramc back to ToC or Class ToC

denotator typec back to ToC or Class ToC

deoxyribonucleic acidc back to ToC or Class ToC

Deuterostomiac back to ToC or Class ToC

devicec back to ToC or Class ToC

diagramc back to ToC or Class ToC

dimensionality reductionc back to ToC or Class ToC

Dipnotetrapodomorphac back to ToC or Class ToC

directive information entityc back to ToC or Class ToC

dispositionc back to ToC or Class ToC

DNA sequence datac back to ToC or Class ToC

action specification^c back to ToC or Class ToC

adventitious taxonomic inventory process^c back to ToC or Class ToC

agricultural household^c back to ToC or Class ToC

algorithm^c back to ToC or Class ToC

ambidextrous handedness^c back to ToC or Class ToC

Amniota^c back to ToC or Class ToC

analysis subset ontology module^c back to ToC or Class ToC

anatomical cluster^c back to ToC or Class ToC

Archaea^c back to ToC or Class ToC

archeobotanical specimen^c back to ToC or Class ToC

assay^c back to ToC or Class ToC

assay objective^c back to ToC or Class ToC

astronomical body part^c back to ToC or Class ToC

B cell^c back to ToC or Class ToC

Bacteria^c back to ToC or Class ToC

base ontology module^c back to ToC or Class ToC

behavioral quality^c back to ToC or Class ToC

Bilateria^c back to ToC or Class ToC

Boreoeutheria^c back to ToC or Class ToC

bridge ontology module^c back to ToC or Class ToC

CART^c back to ToC or Class ToC

catalytic activity^c back to ToC or Class ToC

Catarrhini^c back to ToC or Class ToC

categorical label^c back to ToC or Class ToC

categorical value specification^c back to ToC or Class ToC

cell^c back to ToC or Class ToC

cell freezing medium^c back to ToC or Class ToC

cellular organisms^c back to ToC or Class ToC

Chordata^c back to ToC or Class ToC

class discovery data transformation^c back to ToC or Class ToC

class discovery objective^c back to ToC or Class ToC

class prediction data transformation^c back to ToC or Class ToC

class prediction objective^c back to ToC or Class ToC

classified data set^c back to ToC or Class ToC

clinical tumor stage group according to AJCC 7th edition^c back to ToC or Class ToC

clustered data set^c back to ToC or Class ToC

clustered data visualization^c back to ToC or Class ToC

collecting specimen from organism^c back to ToC or Class ToC

collection of humans^c back to ToC or Class ToC

collection of organisms^c back to ToC or Class ToC

collection of specimens^c back to ToC or Class ToC

compilation taxonomic inventory process^c back to ToC or Class ToC

concentration unit^c back to ToC or Class ToC

construction^c back to ToC or Class ToC

continuant^c back to ToC or Class ToC

Craniata <chordata>^c back to ToC or Class ToC

cross validation objective^c back to ToC or Class ToC

culture medium^c back to ToC or Class ToC

cultured cell^c back to ToC or Class ToC

cultured cell population^c back to ToC or Class ToC

curation status specification^c back to ToC or Class ToC

curation subset ontology module^c back to ToC or Class ToC

cytometry assay^c back to ToC or Class ToC

data about an ontology part^c back to ToC or Class ToC

data format specification^c back to ToC or Class ToC

data item^c back to ToC or Class ToC

data set^c back to ToC or Class ToC

data transformation^c back to ToC or Class ToC

data transformation objective^c back to ToC or Class ToC

data visualization^c back to ToC or Class ToC

datum label^c back to ToC or Class ToC

db xref^c back to ToC or Class ToC

decision tree building data transformation^c back to ToC or Class ToC

decision tree induction objective^c back to ToC or Class ToC

definition^c back to ToC or Class ToC

dendrogram^c back to ToC or Class ToC

denotator type^c back to ToC or Class ToC

deoxyribonucleic acid^c back to ToC or Class ToC

Deuterostomia^c back to ToC or Class ToC

device^c back to ToC or Class ToC

diagram^c back to ToC or Class ToC

dimensionality reduction^c back to ToC or Class ToC

Dipnotetrapodomorpha^c back to ToC or Class ToC

directive information entity^c back to ToC or Class ToC

disposition^c back to ToC or Class ToC

DNA sequence data^c back to ToC or Class ToC

DNA sequencer^c back to ToC or Class ToC

document^c back to ToC or Class ToC

dot plot^c back to ToC or Class ToC

Eastern Cooperative Oncology Group score value specification^c back to ToC or Class ToC