IRI:
http://purl.obolibrary.org/obo/ido.owl
Version IRI:
http://purl.obolibrary.org/obo/ido/2017-11-03/ido.owl
Date:
03T15:13:52/11/2017
Current version:
2017-11-03
Authors:
Alan Ruttenberg
Albert Goldfain
Alexander Diehl
Barry Smith
Bjoern Peters
Lindsay Cowell
Contributors:
Jie Zheng
Other visualisation:
Ontology source

Abstract

The core Infectious Disease Ontology is an ontology of entities generally relevant to both the biomedical and clinical aspects of infectious diseases, including terms such as 'pathogen', 'host', 'vector', and 'vaccine'. The structure of IDO adheres to the Basic Formal Ontology. Terms in IDO that are within the scope of other OBO Foundry ontologies, such as the Gene Ontology, are derived from those ontologies. Other terms are defined as cross-products of terms from Foundry ontologies to the extent possible. For more information, see http://www.infectiousdiseaseontology.org/Home.html.

Table of Content

  1. Classes
  2. Object Properties
  3. Named Individuals
  4. Annotation Properties
  5. General Axioms
  6. Namespace Declarations

Classes

_obsolete_activec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000007

has super-classes
Obsolete Classc

_obsolete_adaptive immunity to infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000577

has super-classes
Obsolete Classc

_obsolete_adhesinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000207

has super-classes
Obsolete Classc

_obsolete_adhesion factorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000055

has super-classes
Obsolete Classc

_obsolete_afimbrial specific adherencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000077

has super-classes
Obsolete Classc

_obsolete_antibioticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000053

has super-classes
Obsolete Classc

_obsolete_antibiotic resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000028

has super-classes
Obsolete Classc

_obsolete_antigenic variationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000111

has super-classes
Obsolete Classc

_obsolete_antimicrobialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000049

has super-classes
Obsolete Classc

_obsolete_attenuatedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000032

has super-classes
Obsolete Classc

_obsolete_biological objectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000613

has super-classes
Obsolete Classc

_obsolete_biological object colonyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000605

has super-classes
Obsolete Classc

_obsolete_bioticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000206

has super-classes
Obsolete Classc

_obsolete_carrierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000057

has super-classes
Obsolete Classc

_obsolete_case of infectious diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000218

has super-classes
Obsolete Classc

_obsolete_chronic carrierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000058

has super-classes
Obsolete Classc

_obsolete_chronic quality of infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000478

has super-classes
Obsolete Classc

_obsolete_co-infectedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000305

has super-classes
Obsolete Classc

_obsolete_colonizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000205

has super-classes
Obsolete Classc

_obsolete_colonization factorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000054

has super-classes
Obsolete Classc

_obsolete_colonizerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000036

has super-classes
Obsolete Classc

_obsolete_commensalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000037

has super-classes
Obsolete Classc

_obsolete_communicable dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000591

has super-classes
Obsolete Classc

_obsolete_complement resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000116

has super-classes
Obsolete Classc

_obsolete_configured infectious organism populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000516

has super-classes
Obsolete Classc

_obsolete_contagiousc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000008

has super-classes
Obsolete Classc

_obsolete_contagiousness qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000624

has super-classes
Obsolete Classc

_obsolete_damaging host cells and tissues in subepithelial spacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000092

has super-classes
Obsolete Classc

_obsolete_dependovirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000065

has super-classes
Obsolete Classc

_obsolete_disruption of body surfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000072

has super-classes
Obsolete Classc

_obsolete_disruption of normal microbioflorac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000073

has super-classes
Obsolete Classc

_obsolete_dormancyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000209

has super-classes
Obsolete Classc

_obsolete_dormancy periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000227

has super-classes
Obsolete Classc

_obsolete_drug resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000027

has super-classes
Obsolete Classc

_obsolete_emergencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000101

has super-classes
Obsolete Classc

_obsolete_emerging pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000068

has super-classes
Obsolete Classc

_obsolete_end reservoirc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000201

has super-classes
Obsolete Classc

_obsolete_end reservoir of infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000546

has super-classes
Obsolete Classc

_obsolete_endemicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000034

has super-classes
Obsolete Classc

_obsolete_endogenousc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000031

has super-classes
Obsolete Classc

_obsolete_endotoxinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000044

has super-classes
Obsolete Classc

_obsolete_endotoxin dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000429

has super-classes
toxin dispositionc
Obsolete Classc

_obsolete_engulfmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000086

has super-classes
Obsolete Classc

_obsolete_engulfment by nonphagocytec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000090

has super-classes
Obsolete Classc

_obsolete_engulfment by phagocytec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000091

has super-classes
Obsolete Classc

_obsolete_enterotoxin dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000428

has super-classes
exotoxin dispositionc
Obsolete Classc

_obsolete_epidemicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000020

has super-classes
Obsolete Classc

_obsolete_epidemic spread of diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000117

has super-classes
Obsolete Classc

_obsolete_epidemiological spread of diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000102

has super-classes
Obsolete Classc

_obsolete_exogenousc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000011

has super-classes
Obsolete Classc

_obsolete_exotoxinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000045

has super-classes
Obsolete Classc

_obsolete_extrinsic incubation periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000225

has super-classes
Obsolete Classc

_obsolete_factorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000204

has super-classes
Obsolete Classc

_obsolete_fimbrial specific adherencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000078

has super-classes
Obsolete Classc

_obsolete_fitnessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000306

has super-classes
Obsolete Classc

_obsolete_fomitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000060

has super-classes
Obsolete Classc

_obsolete_fusion proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000035

has super-classes
Obsolete Classc

_obsolete_fusion with host cell membranec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000087

has super-classes
Obsolete Classc

_obsolete_genetic diversificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000115

has super-classes
Obsolete Classc

_obsolete_herd immunityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000216

has super-classes
Obsolete Classc

_obsolete_highly exposed persistently seronegativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000303

has super-classes
Obsolete Classc

_obsolete_horizontal transmissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000231

has super-classes
Obsolete Classc

_obsolete_hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000056

has super-classes
Obsolete Classc

_obsolete_host recovery periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000223

has super-classes
Obsolete Classc

_obsolete_immunityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000012

has super-classes
Obsolete Classc

_obsolete_immunizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000106

has super-classes
Obsolete Classc

_obsolete_immunocompromisedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000024

has super-classes
Obsolete Classc

_obsolete_immunosuppressedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000010

has super-classes
Obsolete Classc

_obsolete_inactivatedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000016

has super-classes
Obsolete Classc

_obsolete_incidencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000029

has super-classes
Obsolete Classc

_obsolete_incubation periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000219

has super-classes
Obsolete Classc

_obsolete_induction of damaging host immune responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000093

has super-classes
Obsolete Classc

_obsolete_infectedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000021

has super-classes
Obsolete Classc

_obsolete_infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000104

has super-classes
Obsolete Classc

_obsolete_infection treatment processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000105

has super-classes
Obsolete Classc

_obsolete_infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000066

has super-classes
Obsolete Classc

_obsolete_infectious diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000098

has super-classes
Obsolete Classc

_obsolete_infectious disease coursec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000222

has super-classes
Obsolete Classc

_obsolete_infectious disease progressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000221

has super-classes
Obsolete Classc

_obsolete_infectious disease progression stagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000233

has super-classes
Obsolete Classc

_obsolete_infectious organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000527

has super-classes
Obsolete Classc

_obsolete_infectivity periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000220

has super-classes
Obsolete Classc

_obsolete_initiation of infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000071

has super-classes
Obsolete Classc

_obsolete_intrinsic incubation periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000224

has super-classes
Obsolete Classc

_obsolete_invasinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000042

has super-classes
Obsolete Classc

_obsolete_invasinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000574

has super-classes
Obsolete Classc

_obsolete_invasivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000030

has super-classes
Obsolete Classc

_obsolete_latencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000009

has super-classes
Obsolete Classc

_obsolete_livec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000022

has super-classes
Obsolete Classc

_obsolete_long-term non-progressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000302

has super-classes
Obsolete Classc

_obsolete_medicinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000050

has super-classes
Obsolete Classc

_obsolete_membrane invaginationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000088

has super-classes
Obsolete Classc

_obsolete_mobile genetic elementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000061

has super-classes
Obsolete Classc

_obsolete_mode of transmissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000200

has super-classes
Obsolete Classc

_obsolete_modulation of inflammatory responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000110

has super-classes
Obsolete Classc

_obsolete_morbidityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000033

has super-classes
Obsolete Classc

_obsolete_mortalityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000017

has super-classes
Obsolete Classc

_obsolete_nonspecific adherencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000075

has super-classes
Obsolete Classc

_obsolete_objectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000003

has super-classes
Obsolete Classc

_obsolete_opportunistic pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000067

has super-classes
Obsolete Classc

_obsolete_oral-fecal transmissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000229

has super-classes
Obsolete Classc

_obsolete_outbreakc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000103

has super-classes
Obsolete Classc

_obsolete_pandemicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000018

has super-classes
Obsolete Classc

_obsolete_pandemic spread of diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000118

has super-classes
Obsolete Classc

_obsolete_parasitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000038

has super-classes
Obsolete Classc

_obsolete_passage through cell membranec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000089

has super-classes
Obsolete Classc

_obsolete_pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000064

has super-classes
Obsolete Classc

_obsolete_pathogen adherence to host cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000074

has super-classes
Obsolete Classc

_obsolete_pathogen evasion of host immune responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000100

has super-classes
Obsolete Classc

_obsolete_pathogen life cyclec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000226

has super-classes
Obsolete Classc

_obsolete_pathogen life cycle stagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000232

has super-classes
Obsolete Classc

_obsolete_pathogen outbreakc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000228

has super-classes
Obsolete Classc

_obsolete_pathogen spread through hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000097

has super-classes
Obsolete Classc

_obsolete_pathogen-induced apoptosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000094

has super-classes
Obsolete Classc

_obsolete_pathogen-induced necrosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000095

has super-classes
Obsolete Classc

_obsolete_pathogenesisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000084

has super-classes
Obsolete Classc

_obsolete_pathogenicityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000025

has super-classes
Obsolete Classc

_obsolete_pathogenicity islandc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000062

has super-classes
Obsolete Classc

_obsolete_penetration of epithelial barrierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000079

has super-classes
Obsolete Classc

_obsolete_penetration of host cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000085

has super-classes
Obsolete Classc

_obsolete_penetration via injury of epithelial barrierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000080

has super-classes
Obsolete Classc

_obsolete_phase variationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000114

has super-classes
Obsolete Classc

_obsolete_prevalencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000019

has super-classes
Obsolete Classc

_obsolete_prevention of infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000107

has super-classes
Obsolete Classc

_obsolete_primary pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000069

has super-classes
Obsolete Classc

_obsolete_prionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000070

has super-classes
Obsolete Classc

_obsolete_processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000000

has super-classes
Obsolete Classc

_obsolete_progression ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000300

has super-classes
Obsolete Classc

_obsolete_protectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000013

has super-classes
Obsolete Classc

_obsolete_qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000002

has super-classes
Obsolete Classc

_obsolete_quality of hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000210

has super-classes
Obsolete Classc

_obsolete_quality of host populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000215

has super-classes
Obsolete Classc

_obsolete_quality of infectious diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000217

has super-classes
Obsolete Classc

_obsolete_quality of pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000211

has super-classes
Obsolete Classc

_obsolete_rapid progressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000301

has super-classes
Obsolete Classc

_obsolete_refractorinessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000214

has super-classes
Obsolete Classc

_obsolete_replicating biological material entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000614

has super-classes
Obsolete Classc

_obsolete_reservoirc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000059

has super-classes
Obsolete Classc

_obsolete_resist phagocytosis in subepithelial spacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000112

has super-classes
Obsolete Classc

_obsolete_resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000213

has super-classes
Obsolete Classc

_obsolete_rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000001

has super-classes
Obsolete Classc

_obsolete_route of entryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000041

has super-classes
Obsolete Classc

_obsolete_septicemiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000507

has super-classes
Obsolete Classc

_obsolete_seroprevalencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000208

has super-classes
Obsolete Classc

_obsolete_serum resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000113

has super-classes
Obsolete Classc

_obsolete_signc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000046

has super-classes
Obsolete Classc

_obsolete_specific adherencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000076

has super-classes
Obsolete Classc

_obsolete_susceptibilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000212

has super-classes
Obsolete Classc

_obsolete_swollenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000005

has super-classes
Obsolete Classc

_obsolete_symbiantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000039

has super-classes
Obsolete Classc

_obsolete_symptomc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000048

has super-classes
Obsolete Classc

_obsolete_symptomatic hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000462

has super-classes
Obsolete Classc

_obsolete_temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000015

has super-classes
Obsolete Classc

_obsolete_therapeuticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000051

has super-classes
Obsolete Classc

_obsolete_toxicityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000006

has super-classes
Obsolete Classc

_obsolete_toxinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000043

has super-classes
Obsolete Classc

_obsolete_transcytosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000081

has super-classes
Obsolete Classc

_obsolete_transmissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000083

has super-classes
Obsolete Classc

_obsolete_transport by bloodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000108

has super-classes
Obsolete Classc

_obsolete_transport by lymphc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000109

has super-classes
Obsolete Classc

_obsolete_treatmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000047

has super-classes
Obsolete Classc

_obsolete_tropismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000026

has super-classes
Obsolete Classc

_obsolete_utilization of membranous cell gatewayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000082

has super-classes
Obsolete Classc

_obsolete_vaccinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000119

has super-classes
Obsolete Classc

_obsolete_vaccinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000052

has super-classes
Obsolete Classc

_obsolete_vectorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000063

has super-classes
Obsolete Classc

_obsolete_vertical transmissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000230

has super-classes
Obsolete Classc

_obsolete_viral latencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000575

has super-classes
Obsolete Classc

_obsolete_virulencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000004

has super-classes
Obsolete Classc

_obsolete_virulence factorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000040

has super-classes
Obsolete Classc

_obsolete_virus-induced cytopathogenesisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000096

has super-classes
Obsolete Classc

_obsolete_zoonoticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000023

has super-classes
Obsolete Classc

acquired immunity to infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000621

The disposition is realized in an immune response in which such antigen receptors participate.
is equivalent to
immunity to infectious agentc and (has_material_basis_inop some immunoglobulin complexc or B cell receptor complexc or T cell receptor complexc) and (realized inop only adaptive immune responsec) and (has_material_basis_inop only immunoglobulin complexc or B cell receptor complexc or T cell receptor complexc)
has super-classes
immunity to infectious agentc
is disjoint with
sterilizing immunity to infectious agentc, innate immunity to infectious agentc, humoral immunity to infectious agentc, leukocyte-mediated immunity to infectious agentc, passive immunity to infectious agentc

acquired immunodeficiencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000640

Causes of acquired immunodeficiences include infection and drug treatments (e.g. chemotherapy).
has super-classes
immunodeficiencyc
is disjoint with
primary immunodeficiencyc

active immunization against infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000498

has super-classes
immunization against infectious agentc
has sub-classes
vaccination against infectious agentc, variolationc

acute infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000627

is equivalent to
infectious disorderc and (inverse has_material_basis_inop some realized inop some acute infectious disease coursec)
has super-classes
infectious disorderc

acute infectious disease coursec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000477

has super-classes
infectious disease coursec

adaptive immune responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0002250

has super-classes
immune responsec

adhesion dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000437

The disposition is realized in an adherence to host process.
has super-classes
dispositionc
(inheres inop some molecular entityc) and (realized inop only adhesion of symbiont to hostc)
is disjoint with
virulence factor dispositionc, toxin dispositionc, invasion dispositionc, antimicrobial dispositionc, antiviral dispositionc, antifungal dispositionc, antibacterial dispositionc, antiparasitic dispositionc, protective resistancec, pathogenic dispositionc, invasive dispositionc, collective dispositionc, contagiousnessc, immunocompetencec, immunosuppressive dispositionc, disposition to form a non-parasitic colonyc, transmissibility dispositionc, diseasec

adhesion factorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000557

is equivalent to
molecular entityc and (has dispositionop some adhesion dispositionc)
has super-classes
molecular entityc

adhesion of symbiont to hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044406

has super-classes
biological_processc

amebiasisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000649

has super-classes
infectionc

anatomical entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CARO_0000000

has super-classes
material entityc
has sub-classes
bloodc, cellc, infectious agent portal of entryc, infectious agent portal of exitc
is disjoint with
infectious disorderc, pathogenc, fomitec, disinfectantc, antisepticc, antimicrobialc, antiviralc, antifungalc, antiparasiticc, antibacterialc, infectionc, immunodeficiencyc

antibacterialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000562

is equivalent to
material entityc and (has dispositionop some antibacterial dispositionc)
has super-classes
material entityc
is disjoint with
anatomical entityc, infectionc, disorderc

antibacterial dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000442

has super-classes
dispositionc
(inheres inop some material entityc) and (realized inop only processc and ((results_inop some life-death temporal boundaryc) or (negatively regulatesop some FtsZ-dependent cytokinesisc)))
is disjoint with
virulence factor dispositionc, toxin dispositionc, adhesion dispositionc, invasion dispositionc, antiviral dispositionc, antifungal dispositionc, antiparasitic dispositionc, protective resistancec, pathogenic dispositionc, invasive dispositionc, collective dispositionc, contagiousnessc, immunocompetencec, immunosuppressive dispositionc, disposition to form a non-parasitic colonyc, transmissibility dispositionc, diseasec

antibiotic resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000581

has super-classes
resistance to drugc

antifungalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000560

is equivalent to
material entityc and (has dispositionop some antifungal dispositionc)
has super-classes
material entityc
is disjoint with
anatomical entityc, infectionc, disorderc

antifungal dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000441

has super-classes
dispositionc
(inheres inop some material entityc) and (realized inop only processc and ((results_inop some life-death temporal boundaryc) or (negatively regulatesop some reproductionc) or (negatively regulatesop some developmental processc)))
is disjoint with
virulence factor dispositionc, toxin dispositionc, adhesion dispositionc, invasion dispositionc, antiviral dispositionc, antibacterial dispositionc, antiparasitic dispositionc, protective resistancec, pathogenic dispositionc, invasive dispositionc, collective dispositionc, contagiousnessc, immunocompetencec, immunosuppressive dispositionc, disposition to form a non-parasitic colonyc, transmissibility dispositionc, diseasec

antimicrobialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000558

is equivalent to
material entityc and (has dispositionop some antimicrobial dispositionc)
has super-classes
material entityc
has sub-classes
microbicidec, microbistaticc
is disjoint with
anatomical entityc, infectionc, disorderc

antimicrobial dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000439

The disposition is realized in the killing or inhibition of microorganisms.
has super-classes
dispositionc
(inheres inop some material entityc) and (realized inop only processc and ((results_inop some life-death temporal boundaryc) or (negatively regulatesop some reproductionc) or (negatively regulatesop some developmental processc)))
is disjoint with
virulence factor dispositionc, toxin dispositionc, adhesion dispositionc, invasion dispositionc, protective resistancec, pathogenic dispositionc, invasive dispositionc, collective dispositionc, contagiousnessc, immunocompetencec, immunosuppressive dispositionc, disposition to form a non-parasitic colonyc, transmissibility dispositionc, diseasec

antiparasiticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000561

is equivalent to
material entityc and (has dispositionop some antiparasitic dispositionc)
has super-classes
material entityc
is disjoint with
anatomical entityc, infectionc, disorderc

antiparasitic dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000443

In the term name, we are using parasite in the medical sense of eukaryotic organisms that are parasitic in humans.
has super-classes
dispositionc
(inheres inop some material entityc) and (realized inop only processc and ((results_inop some life-death temporal boundaryc) or (negatively regulatesop some reproductionc) or (negatively regulatesop some developmental processc)))
is disjoint with
virulence factor dispositionc, toxin dispositionc, adhesion dispositionc, invasion dispositionc, antiviral dispositionc, antifungal dispositionc, antibacterial dispositionc, protective resistancec, pathogenic dispositionc, invasive dispositionc, collective dispositionc, contagiousnessc, immunocompetencec, immunosuppressive dispositionc, disposition to form a non-parasitic colonyc, transmissibility dispositionc, diseasec

antisepticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000556

is equivalent to
material entityc and (has roleop some antiseptic rolec)
has super-classes
material entityc
is disjoint with
anatomical entityc, pathogenc, infectionc, organismc, disorderc

antiseptic rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000433

The role is realized in the killing and/or growth inhibition of microorganisms on the anatomical entity.
has super-classes
rolec
(inheres inop some material entityc and (has dispositionop some antimicrobial dispositionc)) and (realized inop only processc and ((results_inop some life-death temporal boundaryc) or (negatively regulatesop some reproductionc) or (negatively regulatesop some developmental processc)))
is disjoint with
symbiont rolec, pathogen rolec, infectious agent transporter rolec, reservoir of infectious agent rolec, infectious agent portal of entry rolec, infectious agent portal of exit rolec, disinfectant rolec, primary infection rolec, secondary infection rolec, host rolec, source of infection rolec

antiviralc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000559

is equivalent to
material entityc and (has dispositionop some antiviral dispositionc)
has super-classes
material entityc
has sub-classes
viricidec
is disjoint with
anatomical entityc, infectionc, disorderc

antiviral dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000440

has super-classes
dispositionc
(inheres inop some material entityc) and (realized inop only processc and (negative regulation of viral processc or (results_inop some life-death temporal boundaryc)))
is disjoint with
virulence factor dispositionc, toxin dispositionc, adhesion dispositionc, invasion dispositionc, antifungal dispositionc, antibacterial dispositionc, antiparasitic dispositionc, protective resistancec, pathogenic dispositionc, invasive dispositionc, collective dispositionc, contagiousnessc, immunocompetencec, immunosuppressive dispositionc, disposition to form a non-parasitic colonyc, transmissibility dispositionc, diseasec

appearance of disorderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000626

is equivalent to
results in formation ofop some disorderc
has super-classes
processc

Archaeac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2157

has super-classes
organismc

asymptomatic host of infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000569

has super-classes
infectious agent hostc
has roleop some infectious agent host rolec

B cell receptor complexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0019815

has super-classes
macromolecular complexc

bacteremiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000506

is equivalent to
infectionc and (has partop some infectious agentc and Bacteriac and (located inop some bloodc))
has super-classes
extracellular infectionc
is disjoint with
intracellular infectionc, local infectionc, viremiac

Bacteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2

has super-classes
organismc

biological regulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0065007

has super-classes
processc
has sub-classes
negative regulation of developmental processc, negative regulation of immune responsec, negative regulation of life-sustaining processc, negative regulation of viral processc

biological vector of infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000542

is equivalent to
organismc and (has roleop some biological vector of infectious agent rolec)
has super-classes
infectious agent vectorc

biological vector of infectious agent rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000420

has super-classes
infectious agent vector rolec
infectious agent vector rolec and (inheres inop some organismc and (location ofop some infectious agentc and (capable ofop some reproductionc and (occurs inop some organismc)))) and (realized inop only indirectc)

biological vehicle of infectious agent rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000422

Examples include blood, serum, tissue, or fresh produce.
has super-classes
infectious agent vehicle rolec

biological_processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0008150

has super-classes
processc
has sub-classes
adhesion of symbiont to hostc, developmental processc, establishment of localizationc, growthc, immune responsec, life-sustaining processc, multi-organism processc, reproductionc

bloodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000178

has super-classes
anatomical entityc

candidiasisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000645

has super-classes
infectionc

cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000000

has super-classes
anatomical entityc
has sub-classes
leukocytec

chronic carrier of infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000572

has super-classes
infectious agent carrierc
organismc and (has roleop some infectious agent carrier rolec)

chronic infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000628

has super-classes
infectionc

chronic infectious disease coursec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000590

has super-classes
infectious disease coursec
has sub-classes
long-term non-progressing infectious disease coursec

chronic systemic steroid use-based immunosuppressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0001010

has super-classes
drug-based immunosuppressionc

co-infected organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000461

has super-classes
infected organismc

collective dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000455

"... in virtue of the individual dispositions of the contstituents" is intended to capture the fact that the collective disposition results from the combination of the individual dispositions. It is not necessary that every constituent of the aggregate have a relevant individual disposition.
has super-classes
dispositionc
inheres inop some object aggregatec
has sub-classes
collective pathogenic dispositionc, collective resistance dispositionc
is disjoint with
virulence factor dispositionc, toxin dispositionc, adhesion dispositionc, invasion dispositionc, antimicrobial dispositionc, antiviral dispositionc, antifungal dispositionc, antibacterial dispositionc, antiparasitic dispositionc, protective resistancec, pathogenic dispositionc, invasive dispositionc, contagiousnessc, immunocompetencec, immunosuppressive dispositionc, disposition to form a non-parasitic colonyc, transmissibility dispositionc, diseasec

collective pathogenic dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000585

The disposition is realized in processes that create a disorder.
is equivalent to
collective dispositionc and (inheres inop some object aggregatec) and (realized inop only processc and (results in formation ofop some disorderc))
has super-classes
collective dispositionc
is disjoint with
collective resistance dispositionc

collective resistance dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000588

has super-classes
collective dispositionc
has sub-classes
herd immunity to infectious organismc
is disjoint with
collective pathogenic dispositionc

colonization of hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000604

is equivalent to
establishment of localization in hostc and (has outputop some colonyc)
has super-classes
establishment of localization in hostc
has sub-classes
colonization of humanc, establishment of a clinically abnormal colonyc

colonization of humanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000650

has super-classes
colonization of hostc
has sub-classes
colonization of human anterior naresc, colonization of human perineumc

colonization of human anterior naresc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000609

has super-classes
colonization of humanc

colonization of human perineumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000652

has super-classes
colonization of humanc

colonized hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000459

is equivalent to
organismc and (part ofop some extended organismc and (has partop some colonyc))
has super-classes
organismc

colonyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000615

has super-classes
organism populationc
has sub-classes
infectious agent colonyc

commensalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000525

is equivalent to
organismc and (has roleop some commensal rolec)
has super-classes
symbiontc

commensal rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000402

The role is realized in processes that result in the commensal's growth, survival, or fitness advantage.
has super-classes
symbiont rolec
inheres inop some organismc and (participates inop some commensalismc)
is disjoint with
mutualist rolec, parasite rolec

commensalismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0085031

has super-classes
symbiosis, encompassing mutualism through parasitismc

communicabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000623

The disposition is realized in a direct, horizontal transmission process between members of the same Species.
is equivalent to
infectious dispositionc and (realized inop only processc and (has partop some establishment of localization in hostc) and (has partop some appearance of disorderc) and (has partop some horizontal pathogen transmission processc))
has super-classes
infectious dispositionc
is disjoint with
opportunistic infectious dispositionc, primary infectious dispositionc, zoonotic dispositionc, reverse zoonotic dispositionc

communicability periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000520

has super-classes
one-dimensional temporal regionc

community-acquired infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000631

has super-classes
infectionc
is disjoint with
hospital-acquired infectionc, nursing-home acquired infectionc

complex infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000471

has super-classes
infectionc

contagiousnessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000458

Highly contagious infections, those with a relatively high likelihood of spread, are referred to as contagious and are those for which spread is likely as a result of day-to-day activities of the host.
has super-classes
dispositionc
(inheres inop some infectious agent hostc) and (realized inop only horizontal pathogen transmission processc)
is disjoint with
virulence factor dispositionc, toxin dispositionc, adhesion dispositionc, invasion dispositionc, antimicrobial dispositionc, antiviral dispositionc, antifungal dispositionc, antibacterial dispositionc, antiparasitic dispositionc, protective resistancec, pathogenic dispositionc, invasive dispositionc, collective dispositionc, immunocompetencec, immunosuppressive dispositionc, disposition to form a non-parasitic colonyc, transmissibility dispositionc, diseasec

continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000002

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
entityc
has sub-classes
generically dependent continuantc, independent continuantc, specifically dependent continuantc
is in domain of
participates inop
is in range of
has participantop
is disjoint with
occurrentc

continuant fiat boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000140

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
immaterial entityc
has sub-classes
one-dimensional continuant fiat boundaryc, two-dimensional continuant fiat boundaryc, zero-dimensional continuant fiat boundaryc
is disjoint with
spatial regionc, sitec

curation status specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000078

is equivalent to
{ ready for release , example to be eventually removed , metadata incomplete , uncurated , pending final vetting , metadata complete , organizational term , requires discussion , to be replaced with external ontology term }
has super-classes
data about an ontology partc
has members
example to be eventually removedni, metadata completeni, metadata incompleteni, organizational termni, pending final vettingni, ready for releaseni, requires discussionni, to be replaced with external ontology termni, uncuratedni

cytotoxinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000584

has super-classes
toxinc
has dispositionop some toxin dispositionc

data about an ontology partc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000102

has super-classes
data itemc
has sub-classes
curation status specificationc, db xrefc, definitionc, denotator typec, obsolescence reason specificationc, subsetc, synonymc, synonym typec

data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000027

has super-classes
information content entityc
has sub-classes
data about an ontology partc

db xrefc back to ToC or Class ToC

IRI: http://www.geneontology.org/formats/oboInOwl#DbXref

has super-classes
data about an ontology partc

dead-end hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000535

is equivalent to
organismc and (has roleop some dead-end host rolec)
has super-classes
hostc

dead-end host rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000412

has super-classes
symbiont host rolec
is disjoint with
definitive host rolec, intermediate host rolec, paratenic host rolec, parasite host rolec

definitionc back to ToC or Class ToC

IRI: http://www.geneontology.org/formats/oboInOwl#Definition

has super-classes
data about an ontology partc

definitive hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000532

is equivalent to
organismc and (has roleop some definitive host rolec)
has super-classes
hostc

definitive host rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000409

The role is realized in developmental and reproduction processes of the host's partner in symbiosis.
has super-classes
symbiont host rolec
is disjoint with
intermediate host rolec, paratenic host rolec, dead-end host rolec, parasite host rolec

denotator typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000409

is equivalent to
{ defined class , universal , named class expression }
has super-classes
data about an ontology partc
has members
defined classni, named class expressionni, universalni

developmental processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0032502

has super-classes
biological_processc

direct host exposure to infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000594

has super-classes
host exposure to infectious agentc

diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000031

has super-classes
dispositionc
has sub-classes
infectious diseasec
is disjoint with
virulence factor dispositionc, toxin dispositionc, adhesion dispositionc, invasion dispositionc, antimicrobial dispositionc, antiviral dispositionc, antifungal dispositionc, antibacterial dispositionc, antiparasitic dispositionc, protective resistancec, pathogenic dispositionc, invasive dispositionc, collective dispositionc, contagiousnessc, immunocompetencec, immunosuppressive dispositionc, disposition to form a non-parasitic colonyc, transmissibility dispositionc

disease coursec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000063

has super-classes
processc
has sub-classes
infectious disease coursec

diseased populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000512

has super-classes
organism populationc
(has partop some organismc and (participates inop some infectious disease coursec)) and (has partop only organismc and (participates inop some infectious disease coursec))

disinfectantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000555

is equivalent to
material entityc and (has roleop some disinfectant rolec)
has super-classes
material entityc
is disjoint with
anatomical entityc, pathogenc, infectionc, organismc, disorderc

disinfectant rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000432

The role is realized in the killing and/or growth inhibition of microorganisms on the non-living entity.
has super-classes
rolec
(inheres inop some material entityc and (has dispositionop some antimicrobial dispositionc)) and (realized inop only processc and ((results_inop some life-death temporal boundaryc) or (negatively regulatesop some reproductionc) or (negatively regulatesop some developmental processc)))
is disjoint with
symbiont rolec, pathogen rolec, infectious agent transporter rolec, reservoir of infectious agent rolec, infectious agent portal of entry rolec, infectious agent portal of exit rolec, antiseptic rolec, primary infection rolec, secondary infection rolec, host rolec, source of infection rolec

disorderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000045

has super-classes
material entityc
has sub-classes
immunodeficiencyc, infectious disorderc
is disjoint with
fomitec, disinfectantc, antisepticc, antimicrobialc, antiviralc, antifungalc, antiparasiticc, antibacterialc, organismc

dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000016

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
realizable entityc
has sub-classes
adhesion dispositionc, antibacterial dispositionc, antifungal dispositionc, antimicrobial dispositionc, antiparasitic dispositionc, antiviral dispositionc, collective dispositionc, contagiousnessc, diseasec, disposition to form a non-parasitic colonyc, functionc, immunocompetencec, immunosuppressive dispositionc, invasion dispositionc, invasive dispositionc, parasitic dispositionc, pathogenic dispositionc, protective resistancec, toxin dispositionc, transmissibility dispositionc, virulence factor dispositionc
is in range of
has dispositionop
is disjoint with
rolec

disposition to form a non-parasitic colonyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000622

has super-classes
dispositionc
is disjoint with
virulence factor dispositionc, toxin dispositionc, adhesion dispositionc, invasion dispositionc, antimicrobial dispositionc, antiviral dispositionc, antifungal dispositionc, antibacterial dispositionc, antiparasitic dispositionc, protective resistancec, pathogenic dispositionc, invasive dispositionc, collective dispositionc, contagiousnessc, immunocompetencec, immunosuppressive dispositionc, transmissibility dispositionc, diseasec

drug susceptibilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000469

has super-classes
susceptibilityc
has sub-classes
drug susceptibility of infectious agentc
is disjoint with
susceptibility to infectious agentc

drug susceptibility of infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000470

has super-classes
drug susceptibilityc
inheres inop some infectious agentc

drug-based immunosuppressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0001009

has super-classes
pathologic immunosuppressionc
has sub-classes
chronic systemic steroid use-based immunosuppressionc

emerging pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000583

has super-classes
infectious agentc

endotoxinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000552

has super-classes
toxinc
has dispositionop some toxin dispositionc

enterotoxinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000551

has super-classes
exotoxinc
has dispositionop some exotoxin dispositionc

entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000001

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
thingc
has sub-classes
continuantc, occurrentc, symptomc

entry into hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044409

has super-classes
multi-organism processc
has sub-classes
entry into host through host barriersc

entry into host through host barriersc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044411

has super-classes
entry into hostc

establishment of a clinically abnormal colonyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000606

has super-classes
colonization of hostc

establishment of localizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0051234

has super-classes
biological_processc
has sub-classes
establishment of localization in hostc

establishment of localization in hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000625

An organism begins bearing a particular host role as soon as the extended organism contains the relevant material entity, regardless of that entity's location in the extended organism. An establishment process is any process by which the entity reaches a location in the extended organism in which it can persist and continue its lifecycle. For example, an organism is host to a virus as soon as any part of the extended organism is occupied by virus particles. During an establishment process, virus particles enter host cells of the relevant type, and viral DNA is integrated into host DNA.
is equivalent to
occurs inop some hostc
has super-classes
establishment of localizationc
has sub-classes
colonization of hostc

Eukaryotac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2759

has super-classes
organismc
has sub-classes
Homo sapiensc

exotoxinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000550

is equivalent to
molecular entityc and (has dispositionop some exotoxin dispositionc)
has super-classes
toxinc
has sub-classes
enterotoxinc

exotoxin dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000427

The disposition is realized in a direct enzymatic process that damages host cells or extracellular matrix.
has super-classes
toxin dispositionc
has sub-classes
_obsolete_enterotoxin dispositionc

extended organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000087

has super-classes
object aggregatec

extracellular infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000472

is equivalent to
infectionc and (has partop some infectious agentc and (not (located inop some cellc)))
has super-classes
infectionc
has sub-classes
bacteremiac, viremiac
is disjoint with
intracellular infectionc

fiat objectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000024

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
material entityc

focal infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000476

has super-classes
local infectionc

fomitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000544

is equivalent to
material entityc and (has roleop some fomite rolec)
has super-classes
vehicle of infectious agentc
is disjoint with
anatomical entityc, pathogenc, organismc, disorderc

fomite rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000423

has super-classes
infectious agent vehicle rolec

FtsZ-dependent cytokinesisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0043093

has super-classes
reproductionc

functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000034

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
dispositionc
is in domain of
function ofop
is in range of
has functionop

generically dependent continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000031

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
continuantc
has sub-classes
information content entityc
is in domain of
is concretized asop
is in range of
concretizesop
is disjoint with
independent continuantc, specifically dependent continuantc, independent continuantc, specifically dependent continuantc

genetic resistance to infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000587

The resistance of individuals to HIV invasion oonferred by particular CCR5 alleles is an example. Resistance against malaria conferred by the sickle cell gene is another.
has super-classes
resistance to infectious agentc

growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0040007

has super-classes
biological_processc

herd immunity to infectious organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000447

is equivalent to
collective resistance dispositionc and (inheres inop some organism populationc) and (realized inop only realizesop some immunity to infectious agentc)
has super-classes
collective resistance dispositionc

historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000182

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
processc
is disjoint with
process profilec

HIV-based immunosuppressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0001004

has super-classes
infection-based immunosuppressionc

Homo sapiensc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9606

has super-classes
Eukaryotac

horizontal pathogen transmission processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000656

has super-classes
transmission processc

hospital-acquired infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000630

has super-classes
infectionc
is disjoint with
community-acquired infectionc

hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000531

is equivalent to
organismc and (has roleop some host rolec)
has super-classes
organismc
has sub-classes
dead-end hostc, definitive hostc, intermediate hostc, parasite hostc, paratenic hostc, pathogen hostc

host coming into contact with vector of infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000601

has super-classes
host exposure to environment containing infectious agentc

host exposure to environment containing infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000597

has super-classes
host exposure to infectious agentc
has sub-classes
host coming into contact with vector of infectious agentc, host exposure to substance that might have infectious agentc, host living in endemic areac, host living with infected household contactc, release of infectious human pathogen in laboratoryc

host exposure to infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000658

has super-classes
processc
has sub-classes
direct host exposure to infectious agentc, host exposure to environment containing infectious agentc

host exposure to substance that might have infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000602

has super-classes
host exposure to environment containing infectious agentc

host living in endemic areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000599

has super-classes
host exposure to environment containing infectious agentc

host living with infected household contactc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000598

has super-classes
host exposure to environment containing infectious agentc

host rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000629

has super-classes
rolec
inheres inop some organismc and (part ofop some extended organismc and (has partop some material entityc))
has sub-classes
pathogen host rolec, symbiont host rolec
is disjoint with
symbiont rolec, pathogen rolec, infectious agent transporter rolec, reservoir of infectious agent rolec, infectious agent portal of entry rolec, infectious agent portal of exit rolec, disinfectant rolec, antiseptic rolec, primary infection rolec, secondary infection rolec, source of infection rolec

human pathogenicity dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000666

has super-classes
pathogenic dispositionc

humoral immune responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0006959

has super-classes
immune responsec

humoral immunity to infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000578

"Circulating body fluid" refers to blood, lymph, and hemolymph.
has super-classes
immunity to infectious agentc
(inheres inop some organismc) and (realized inop only humoral immune responsec)
is disjoint with
sterilizing immunity to infectious agentc, innate immunity to infectious agentc, leukocyte-mediated immunity to infectious agentc, passive immunity to infectious agentc, acquired immunity to infectious agentc

immaterial entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000141

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
independent continuantc
has sub-classes
continuant fiat boundaryc, sitec, spatial regionc
is in range of
has 2D boundaryop
is disjoint with
material entityc

immune populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000592

has super-classes
organism populationc
(has partop some organismc and (has dispositionop some acquired immunity to infectious agentc)) and (has partop only organismc and (has dispositionop some acquired immunity to infectious agentc))

immune responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0006955

has super-classes
biological_processc
has sub-classes
adaptive immune responsec, humoral immune responsec, innate immune responsec, leukocyte mediated immunityc

immunity to infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000448

We don't specify that immunity results from prior exposure, because we want to include innate immunity. In addition, for adaptive immunity, there could be some low level immunity even in a primary immune response.
has super-classes
resistance to infectious agentc
has sub-classes
acquired immunity to infectious agentc, humoral immunity to infectious agentc, innate immunity to infectious agentc, leukocyte-mediated immunity to infectious agentc, passive immunity to infectious agentc, sterilizing immunity to infectious agentc

immunization against infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000497

is equivalent to
processc and (has outputop some inverse has_material_basis_inop some immunity to infectious agentc)
has super-classes
processc
has sub-classes
active immunization against infectious agentc, passive immunization against infectious agentc

immunocompetencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000618

The disposition inheres in a bearer in virtue of the fact that the bearer has all canonical immune system components and none are disordered. The disposition is realized in a successful immune response.
has super-classes
dispositionc
(inheres inop some organismc) and (realized inop only immune responsec)
is disjoint with
virulence factor dispositionc, toxin dispositionc, adhesion dispositionc, invasion dispositionc, antimicrobial dispositionc, antiviral dispositionc, antifungal dispositionc, antibacterial dispositionc, antiparasitic dispositionc, protective resistancec, pathogenic dispositionc, invasive dispositionc, collective dispositionc, contagiousnessc, immunosuppressive dispositionc, disposition to form a non-parasitic colonyc, transmissibility dispositionc, diseasec

immunocompetent organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000457

is equivalent to
organismc and (has dispositionop some immunocompetencec)
has super-classes
organismc
is disjoint with
immunosuppressed organismc, immunodeficient organismc

immunodeficiencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000617

has super-classes
disorderc
has sub-classes
acquired immunodeficiencyc, primary immunodeficiencyc
is disjoint with
anatomical entityc, infectious disorderc, pathogenc, vehicle of infectious agentc, infectious agent reservoirc, resistant entityc, infectionc, source of infectionc

immunodeficient organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000589

is equivalent to
organismc and (has partop some immunodeficiencyc)
has super-classes
organismc
is disjoint with
immunocompetent organismc

immunoglobulin complexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0019814

has super-classes
macromolecular complexc

immunosuppressed human experiencing chronic systemic steroid use-based immunosuppressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0001013

has super-classes
immunosuppressed organism experiencing chronic systemic steroid use-based immunosuppressionc

immunosuppressed human experiencing drug-based immunosuppression due to organ transplantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0001014

has super-classes
immunosuppressed organism experiencing drug-based immunosuppressionc

immunosuppressed human experiencing HIV-based immunosuppressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0001008

has super-classes
immunosuppressed organism experiencing HIV-based immunosuppressionc

immunosuppressed organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000456

is equivalent to
organismc and (participates inop some pathologic immunosuppressionc or pregnancy-induced immunosuppressionc)
has super-classes
organismc
has sub-classes
pathologically immunosuppressed organismc
is disjoint with
immunocompetent organismc

immunosuppressed organism experiencing chronic systemic steroid use-based immunosuppressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0001012

has super-classes
immunosuppressed organism experiencing drug-based immunosuppressionc
has sub-classes
immunosuppressed human experiencing chronic systemic steroid use-based immunosuppressionc

immunosuppressed organism experiencing drug-based immunosuppressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0001011

is equivalent to
pathologically immunosuppressed organismc and (participates inop some drug-based immunosuppressionc)
has super-classes
pathologically immunosuppressed organismc
has sub-classes
immunosuppressed human experiencing drug-based immunosuppression due to organ transplantc, immunosuppressed organism experiencing chronic systemic steroid use-based immunosuppressionc

immunosuppressed organism experiencing HIV-based immunosuppressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0001007

has super-classes
immunosuppressed organism experiencing infection-based immunosuppressionc
has sub-classes
immunosuppressed human experiencing HIV-based immunosuppressionc

immunosuppressed organism experiencing infection-based immunosuppressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0001006

is equivalent to
pathologically immunosuppressed organismc and (participates inop some infection-based immunosuppressionc)
has super-classes
pathologically immunosuppressed organismc
has sub-classes
immunosuppressed organism experiencing HIV-based immunosuppressionc

immunosuppressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000610

is equivalent to
processc and (negatively regulatesop some immune responsec)
has super-classes
processc
has sub-classes
pathologic immunosuppressionc, physiologic immunosuppressionc, pregnancy-induced immunosuppressionc

immunosuppressive dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000619

has super-classes
dispositionc
(inheres inop some material entityc) and (realized inop only immunosuppressionc)
is disjoint with
virulence factor dispositionc, toxin dispositionc, adhesion dispositionc, invasion dispositionc, antimicrobial dispositionc, antiviral dispositionc, antifungal dispositionc, antibacterial dispositionc, antiparasitic dispositionc, protective resistancec, pathogenic dispositionc, invasive dispositionc, collective dispositionc, contagiousnessc, immunocompetencec, disposition to form a non-parasitic colonyc, transmissibility dispositionc, diseasec

incubation periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000519

has super-classes
one-dimensional temporal regionc

independent continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000004

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
continuantc
has sub-classes
immaterial entityc, material entityc
is in domain of
capable ofop, has dispositionop, has functionop, has roleop
is in range of
occurs inop
is disjoint with
specifically dependent continuantc, generically dependent continuantc, specifically dependent continuantc, generically dependent continuantc

indirectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/TRANS_0000002

has super-classes
transmission processc

infected organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000460

is equivalent to
organismc and (part ofop some extended organismc and (has partop some infectionc))
has super-classes
organismc
has sub-classes
co-infected organismc

infected populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000511

has super-classes
organism populationc
(has partop some infected organismc) and (has partop only infected organismc)

infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000586

The organism corresponding to the extended organism is host to the infectious agents. By this definition, parts of the host can be considered part of the infection.
has super-classes
material entityc
(part ofop some extended organismc) and (has partop some infectious agentc)
has sub-classes
Shigellosisc, amebiasisc, candidiasisc, chronic infectionc, community-acquired infectionc, complex infectionc, extracellular infectionc, hospital-acquired infectionc, infectious disorderc, intracellular infectionc, leptospirosisc, local infectionc, metatstatic infectionc, nursing-home acquired infectionc, simple infectionc, subclinical infectionc, systemic infectionc, trichomoniasisc
is disjoint with
anatomical entityc, disinfectantc, antisepticc, antimicrobialc, antiviralc, antifungalc, antiparasiticc, antibacterialc, immunodeficiencyc

infection incidencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000480

A particular instance of infection incidence will depend on a type of infectious agent, a population, and a period of time. Incidence is used as a measure of risk. Actual measures of incidence are based only on reported cases and usually specify a time interval and geographic location. Other constraints may include population demographics. These constraints will vary with the context of the incidence measure.
has super-classes
qualityc
inheres inop some organism populationc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

infection incidence proportionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000482

An instance of infection incidence proportion is measured by dividing a measure of an instance of infection incidence by the number of members of the population not infected at the beginning of the specified period of time over which the incidence was measured.
has super-classes
qualityc
inheres inop some organism populationc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

infection incidence ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000484

An instance of infection incidence rate is measured by dividing a measure of an instance of infection incidence proportion by the length of the period of time over which the incidence was measured.
has super-classes
qualityc
inheres inop some organism populationc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

infection prevalencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000486

Prevalence is sometimes defined as a proportion with total population size in the denominator. A particular instance of infection prevalence will depend on a type of infectious agent, a population, and a period of time. Actual measures of prevalence are based only on reported cases and usually specify a time interval and geographic location. Other constraints may include population demographics.
has super-classes
qualityc
inheres inop some organism populationc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

infection-based immunosuppressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0001003

has super-classes
pathologic immunosuppressionc
has sub-classes
HIV-based immunosuppressionc

infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000596

is equivalent to
organismc and (has dispositionop some infectious dispositionc)
has super-classes
pathogenc
organismc
has sub-classes
emerging pathogenc, infectious human pathogenc, opportunistic pathogenc, primary pathogenc, re-emerging pathogenc

infectious agent carrierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000539

is equivalent to
organismc and (has roleop some infectious agent carrier rolec)
has super-classes
infectious agent hostc
has sub-classes
chronic carrier of infectious agentc

infectious agent carrier rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000416

has super-classes
infectious agent host rolec

infectious agent colonyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000616

is equivalent to
colonyc and (has partop some infectious agentc) and (has partop only infectious agentc)
has super-classes
colonyc

infectious agent hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000537

is equivalent to
organismc and (has roleop some infectious agent host rolec)
has super-classes
pathogen hostc
has sub-classes
asymptomatic host of infectious agentc, infectious agent carrierc, symptomatic host of infectious agentc

infectious agent host rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000414

By this definition, vectors and other organisms that may not be infected are bearers of the infectious agent host role.
has super-classes
pathogen host rolec
inheres inop some organismc and (part ofop some extended organismc and (has partop some infectious agentc))
has sub-classes
infectious agent carrier rolec

infectious agent populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000513

has super-classes
organism populationc
(has partop some infectious agentc) and (has partop only infectious agentc)

infectious agent portal of entryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000553

is equivalent to
anatomical entityc and (has roleop some infectious agent portal of entry rolec)
has super-classes
anatomical entityc

infectious agent portal of entry rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000430

The role is realized in a process by which an infectious agent enters a host.
has super-classes
rolec
(inheres inop some anatomical entityc) and (realized inop only processc and (part ofop some transmission processc))
is disjoint with
symbiont rolec, pathogen rolec, infectious agent transporter rolec, reservoir of infectious agent rolec, infectious agent portal of exit rolec, disinfectant rolec, antiseptic rolec, primary infection rolec, secondary infection rolec, host rolec, source of infection rolec

infectious agent portal of exitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000554

is equivalent to
anatomical entityc and (has roleop some infectious agent portal of exit rolec)
has super-classes
anatomical entityc

infectious agent portal of exit rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000431

The role is realized in a process by which an infectious agent exists a host.
has super-classes
rolec
(inheres inop some anatomical entityc) and (realized inop only processc and (part ofop some transmission processc))
is disjoint with
symbiont rolec, pathogen rolec, infectious agent transporter rolec, reservoir of infectious agent rolec, infectious agent portal of entry rolec, disinfectant rolec, antiseptic rolec, primary infection rolec, secondary infection rolec, host rolec, source of infection rolec

infectious agent reservoirc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000545

is equivalent to
material entityc and (has roleop some reservoir of infectious agent rolec)
has super-classes
material entityc
is disjoint with
immunodeficiencyc

infectious agent rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000404

has super-classes
pathogen rolec
inheres inop some infectious agentc and (located inop some hostc)

infectious agent seroprevalencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000488

Prevalence is sometimes defined as a proportion with total population size in the denominator. A particular instance of infectious agent seroprevalence will depend on a type of infectious agent and a population. Actual measures of seroprevalence are based only on tested individuals and usually specify a geographic location. Other constraints may include population demographics.
has super-classes
qualityc
inheres inop some organism populationc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

infectious agent transmissibilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000463

The transmissibility quality varies with both the type of organism being transmitted and the type of organism to which transmission is happening.
has super-classes
qualityc
inheres inop some infectious agentc
is disjoint with
infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

infectious agent transporter rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000417

The role is realized in a process that transfers an infectious organism from one location to another.
has super-classes
rolec
(inheres inop some material entityc and (location ofop some infectious agentc)) and (realized inop only indirectc)
has sub-classes
infectious agent vector rolec, infectious agent vehicle rolec
is disjoint with
symbiont rolec, pathogen rolec, reservoir of infectious agent rolec, infectious agent portal of entry rolec, infectious agent portal of exit rolec, disinfectant rolec, antiseptic rolec, primary infection rolec, secondary infection rolec, host rolec, source of infection rolec

infectious agent vectorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000540

is equivalent to
organismc and (has roleop some infectious agent vector rolec)
has super-classes
organismc
has sub-classes
biological vector of infectious agentc, mechanical vector of infectious agentc

infectious agent vector rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000418

The role is realized in a transmission process. A bearer of a vector role is also a bearer of a host role.
is equivalent to
infectious agent transporter rolec and (inheres inop some organismc and (location ofop some infectious agentc)) and (realized inop only indirectc)
has super-classes
infectious agent transporter rolec
has sub-classes
biological vector of infectious agent rolec, mechanical vector of infectious agent rolec

infectious agent vehicle rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000421

Drinking water bears the infectious agent vehicle role, but does not bear either of the subtype roles.
is equivalent to
infectious agent transporter rolec and (inheres inop some material entityc and (not (organismc)) and (location ofop some infectious agentc)) and (realized inop only indirectc)
has super-classes
infectious agent transporter rolec
has sub-classes
biological vehicle of infectious agent rolec, fomite rolec

infectious diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000436

The disposition is realized in an infectious disease course.
is equivalent to
diseasec and (has_material_basis_inop some infectious disorderc) and (inheres inop some organismc and (part ofop some extended organismc and (has partop some infectious disorderc))) and (realized inop only infectious disease coursec) and (has_material_basis_inop only infectious disorderc) and (inheres inop only organismc and (part ofop some extended organismc and (has partop some infectious disorderc)))
has super-classes
diseasec
has sub-classes
reverse zoonosisc, zoonosisc

infectious disease coursec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000495

is equivalent to
disease coursec and (realizesop some infectious diseasec)
has super-classes
disease coursec
has sub-classes
acute infectious disease coursec, chronic infectious disease coursec

infectious disease endemic levelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000491

Infectious disease endemic level is relational to previous prevalences of the disease.
has super-classes
infectious disease prevalencec

infectious disease endemic ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000492

Infectious disease endemic rate is relational to previous infectious disease incidence rates of the disease.
has super-classes
infectious disease incidence ratec

infectious disease endemicityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000490

A particular instance of infectious disease endemicity will depend on a type of infectious agent and a population. The population may be specified by temporal, geographic, or demographic constraints. Infectious diseases that are typical or common to a particular population are referred to as endemic.
has super-classes
qualityc
inheres inop some organism populationc
has sub-classes
infectious disease hyper-endemicityc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease sporadicityc

infectious disease epidemicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000502

has super-classes
processc

infectious disease hyper-endemicityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000493

Hyper-endemic infectious diseases may have high endemic levels only in certain seasons. A hyper-endemic disease affects all age groups equally.
has super-classes
infectious disease endemicityc

infectious disease incidencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000479

A particular instance of infectious disease incidence will depend on a type of infectious disease, a population, and a period of time. Incidence is used as a measure of risk. Actual measures of incidence are based only on reported cases and usually specify a time interval and geographic location. Other constraints may include population demographics. These constraints will vary with the context of the incidence measure.
has super-classes
qualityc
inheres inop some organism populationc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

infectious disease incidence proportionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000481

An instance of infectious disease incidence proportion is measured by dividing a measure of an instance of infectious disease incidence by the number of members of the population in which the infectious disease course had not begun at the beginning of the specified period of time over which the incidence was measured.
has super-classes
qualityc
inheres inop some organism populationc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

infectious disease incidence ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000483

An instance of infectious disease incidence rate is measured by dividing a measure of an instance of the infectious disease incidence proportion by the length of the period of time over which the incidence was measured.
has super-classes
qualityc
inheres inop some organism populationc
has sub-classes
infectious disease endemic ratec
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

infectious disease lifetime prevalencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000487

Prevalence is sometimes defined as a proportion with total population size in the denominator. A particular instance of infectious disease lifetime prevalence will depend on a type of infectious disease and a population. Actual measures of prevalence are based only on reported cases and usually specify a geographic location. Other constraints may include population demographics.
has super-classes
qualityc
inheres inop some organism populationc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

infectious disease mortality ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000489

A particular instance of infectious disease mortality rate will depend on a type of infectious disease and a population. Actual measures of mortality rate are based only on reported cases and usually specify a geographic location. Other constraints may include population demographics. Mortality rate is typically expressed in units of deaths per 1000 individuals per year.
has super-classes
qualityc
inheres inop some organism populationc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease endemicityc, infectious disease sporadicityc

infectious disease pandemicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000503

has super-classes
processc

infectious disease prevalencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000485

Prevalence is sometimes defined as a proportion with total population size in the denominator. A particular instance of infectious disease prevalence will depend on a type of infectious disease, a population, and a period of time. Actual measures of prevalence are based only on reported cases and usually specify a time interval and geographic location. Other constraints may include population demographics.
has super-classes
qualityc
inheres inop some organism populationc
has sub-classes
infectious disease endemic levelc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

infectious disease sporadicityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000494

Sporadic quality of infectious disease is relational to previous prevalence of the disease.
has super-classes
qualityc
inheres inop some organism populationc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc

infectious disorderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000504

is equivalent to
infectionc and disorderc
has super-classes
infectionc
disorderc
has sub-classes
acute infectionc, primary infectionc, secondary infectionc
is disjoint with
anatomical entityc, immunodeficiencyc

infectious dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000452

The disposition is realized in a process that has as part a transmission process, an establishment in host process, a process that results in a disorder, and a process in which the bearer of the disposition becomes part of that disorder. The infectious disposition has a complementary disposition that inheres in an organism and is the capability to be host to an organism with an infectious disposition and to undergo processes initiated by that infectious organism that result in a disorder.
has super-classes
pathogenic dispositionc
(inheres inop some organismc) and (realized inop only processc and (has partop some establishment of localization in hostc) and (has partop some appearance of disorderc) and (has partop some transmission processc))
has sub-classes
communicabilityc, opportunistic infectious dispositionc, primary infectious dispositionc, reverse zoonotic dispositionc, zoonotic dispositionc

infectious human pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000639

has super-classes
infectious agentc

infectivityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000464

This quality is measured by the proportion of exposed who become infected.
has super-classes
qualityc
inheres inop some organism populationc
is disjoint with
infectious agent transmissibilityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000030

has super-classes
generically dependent continuantc
has sub-classes
data itemc

innate immune responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0045087

has super-classes
immune responsec

innate immunity to infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000576

The disposition is realized in an innate immune response.
has super-classes
immunity to infectious agentc
(inheres inop some organismc) and (realized inop only innate immune responsec)
is disjoint with
sterilizing immunity to infectious agentc, humoral immunity to infectious agentc, leukocyte-mediated immunity to infectious agentc, passive immunity to infectious agentc, acquired immunity to infectious agentc

intermediate hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000533

is equivalent to
organismc and (has roleop some intermediate host rolec)
has super-classes
hostc

intermediate host rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000410

The role is realized in developmental processes of the host's partner in symbiosis.
has super-classes
symbiont host rolec
is disjoint with
definitive host rolec, paratenic host rolec, dead-end host rolec, parasite host rolec

intracellular infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000473

is equivalent to
infectionc and (has partop some infectious agentc and (located inop some cellc))
has super-classes
infectionc
is disjoint with
extracellular infectionc, viremiac, bacteremiac

invasion dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000438

A molecule with the invasion disposition is referred to as an invasion factor or invasin.
has super-classes
dispositionc
(inheres inop some molecular entityc) and (realized inop only positively regulatesop some entry into host through host barriersc)
is disjoint with
virulence factor dispositionc, toxin dispositionc, adhesion dispositionc, antimicrobial dispositionc, antiviral dispositionc, antifungal dispositionc, antibacterial dispositionc, antiparasitic dispositionc, protective resistancec, pathogenic dispositionc, invasive dispositionc, collective dispositionc, contagiousnessc, immunocompetencec, immunosuppressive dispositionc, disposition to form a non-parasitic colonyc, transmissibility dispositionc, diseasec

invasion factorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000548

is equivalent to
molecular entityc and (has dispositionop some invasion dispositionc)
has super-classes
molecular entityc

invasive dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000451

has super-classes
dispositionc
(inheres inop some infectious agentc) and (realized inop only entry into host through host barriersc)
is disjoint with
virulence factor dispositionc, toxin dispositionc, adhesion dispositionc, invasion dispositionc, antimicrobial dispositionc, antiviral dispositionc, antifungal dispositionc, antibacterial dispositionc, antiparasitic dispositionc, protective resistancec, pathogenic dispositionc, collective dispositionc, contagiousnessc, immunocompetencec, immunosuppressive dispositionc, disposition to form a non-parasitic colonyc, transmissibility dispositionc, diseasec

leptospirosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000647

has super-classes
infectionc

leukocytec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000738

has super-classes
cellc

leukocyte mediated immunityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0002443

has super-classes
immune responsec

leukocyte-mediated immunity to infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000579

The disposition is realized in a leukocyte-mediated immune response.
is equivalent to
immunity to infectious agentc and (has_material_basis_inop some leukocytec) and (realized inop only leukocyte mediated immunityc) and (has_material_basis_inop only leukocytec)
has super-classes
immunity to infectious agentc
is disjoint with
sterilizing immunity to infectious agentc, innate immunity to infectious agentc, humoral immunity to infectious agentc, passive immunity to infectious agentc, acquired immunity to infectious agentc

life-death temporal boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0035944

has super-classes
processc

life-sustaining processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000662

has super-classes
biological_processc

local infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000475

has super-classes
infectionc
has sub-classes
focal infectionc
is disjoint with
systemic infectionc, bacteremiac

long-term non-progressing infectious disease coursec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000496

has super-classes
chronic infectious disease coursec

long-term non-progressorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000582

is equivalent to
organismc and (inverse occurs inop some long-term non-progressing infectious disease coursec)
has super-classes
organismc

macromolecular complexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0032991

has super-classes
material entityc
has sub-classes
B cell receptor complexc, T cell receptor complexc, immunoglobulin complexc

material entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000040

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
independent continuantc
has sub-classes
anatomical entityc, antibacterialc, antifungalc, antimicrobialc, antiparasiticc, antisepticc, antiviralc, disinfectantc, disorderc, fiat objectc, infectionc, infectious agent reservoirc, macromolecular complexc, molecular entityc, objectc, object aggregatec, organismc, pathogenc, resistant entityc, source of infectionc, vehicle of infectious agentc
is in domain of
has 2D boundaryop
is in range of
has_material_basis_inop
is disjoint with
immaterial entityc

mechanical vector of infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000541

is equivalent to
organismc and (has roleop some mechanical vector of infectious agent rolec)
has super-classes
infectious agent vectorc

mechanical vector of infectious agent rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000419

has super-classes
infectious agent vector rolec
infectious agent vector rolec and (inheres inop some organismc and (location ofop some infectious agentc and (not (capable ofop some reproductionc and (occurs inop some organismc))))) and (realized inop only indirectc)

metatstatic infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000633

has super-classes
infectionc

microbicidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000563

is equivalent to
material entityc and (has dispositionop some antimicrobial dispositionc and (realized inop only results_inop some life-death temporal boundaryc))
has super-classes
antimicrobialc

microbistaticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000565

is equivalent to
material entityc and (has dispositionop some antimicrobial dispositionc and (realized inop only (negatively regulatesop some reproductionc) or (negatively regulatesop some developmental processc)))
has super-classes
antimicrobialc

molecular entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_23367

has super-classes
material entityc
has sub-classes
adhesion factorc, invasion factorc, toxinc, virulence factorc

multi-organism processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0051704

has super-classes
biological_processc
has sub-classes
entry into hostc, symbiosis, encompassing mutualism through parasitismc

mutualismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0085030

has super-classes
symbiosis, encompassing mutualism through parasitismc

mutualistc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000524

is equivalent to
organismc and (has roleop some mutualist rolec)
has super-classes
symbiontc

mutualist rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000401

The role is realized in processes that result in the growth, survival, or fitness advantage of either organism.
has super-classes
symbiont rolec
inheres inop some organismc and (participates inop some mutualismc)
is disjoint with
commensal rolec, parasite rolec

negative regulation of developmental processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0051093

has super-classes
biological regulationc

negative regulation of immune responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0050777

has super-classes
biological regulationc

negative regulation of life-sustaining processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000663

is equivalent to
negatively regulatesop some life-sustaining processc
has super-classes
biological regulationc

negative regulation of viral processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0048525

has super-classes
biological regulationc

neurotoxinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000632

has super-classes
toxinc
has dispositionop some toxin dispositionc

normal resident microbiota populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000515

has super-classes
organism populationc

nursing-home acquired infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000638

has super-classes
infectionc
is disjoint with
community-acquired infectionc

objectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000030

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
material entityc

object aggregatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000027

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
material entityc
has sub-classes
extended organismc, organism populationc

obligatory symbiontc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000523

has super-classes
symbiontc
has roleop some symbiont rolec

obsolescence reason specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000225

is equivalent to
{ failed exploratory term , term split , placeholder removed , terms merged , term imported }
has super-classes
data about an ontology partc
has members
failed exploratory termni, placeholder removedni, term importedni, term splitni, terms mergedni

Obsolete Classc back to ToC or Class ToC

IRI: http://www.geneontology.org/formats/oboInOwl#ObsoleteClass

has super-classes
thingc
has sub-classes
_obsolete_activec, _obsolete_adaptive immunity to infectious agentc, _obsolete_adhesinc, _obsolete_adhesion factorc, _obsolete_afimbrial specific adherencec, _obsolete_antibioticc, _obsolete_antibiotic resistancec, _obsolete_antigenic variationc, _obsolete_antimicrobialc, _obsolete_attenuatedc, _obsolete_biological objectc, _obsolete_biological object colonyc, _obsolete_bioticc, _obsolete_carrierc, _obsolete_case of infectious diseasec, _obsolete_chronic carrierc, _obsolete_chronic quality of infectionc, _obsolete_co-infectedc, _obsolete_colonizationc, _obsolete_colonization factorc, _obsolete_colonizerc, _obsolete_commensalc, _obsolete_communicable dispositionc, _obsolete_complement resistancec, _obsolete_configured infectious organism populationc, _obsolete_contagiousc, _obsolete_contagiousness qualityc, _obsolete_damaging host cells and tissues in subepithelial spacec, _obsolete_dependovirusc, _obsolete_disruption of body surfacec, _obsolete_disruption of normal microbioflorac, _obsolete_dormancyc, _obsolete_dormancy periodc, _obsolete_drug resistancec, _obsolete_emergencec, _obsolete_emerging pathogenc, _obsolete_end reservoirc, _obsolete_end reservoir of infectious agentc, _obsolete_endemicc, _obsolete_endogenousc, _obsolete_endotoxinc, _obsolete_endotoxin dispositionc, _obsolete_engulfmentc, _obsolete_engulfment by nonphagocytec, _obsolete_engulfment by phagocytec, _obsolete_enterotoxin dispositionc, _obsolete_epidemicc, _obsolete_epidemic spread of diseasec, _obsolete_epidemiological spread of diseasec, _obsolete_exogenousc, _obsolete_exotoxinc, _obsolete_extrinsic incubation periodc, _obsolete_factorc, _obsolete_fimbrial specific adherencec, _obsolete_fitnessc, _obsolete_fomitec, _obsolete_fusion proteinc, _obsolete_fusion with host cell membranec, _obsolete_genetic diversificationc, _obsolete_herd immunityc, _obsolete_highly exposed persistently seronegativec, _obsolete_horizontal transmissionc, _obsolete_hostc, _obsolete_host recovery periodc, _obsolete_immunityc, _obsolete_immunizationc, _obsolete_immunocompromisedc, _obsolete_immunosuppressedc, _obsolete_inactivatedc, _obsolete_incidencec, _obsolete_incubation periodc, _obsolete_induction of damaging host immune responsec, _obsolete_infectedc, _obsolete_infectionc, _obsolete_infection treatment processc, _obsolete_infectious agentc, _obsolete_infectious diseasec, _obsolete_infectious disease coursec, _obsolete_infectious disease progressionc, _obsolete_infectious disease progression stagec, _obsolete_infectious organismc, _obsolete_infectivity periodc, _obsolete_initiation of infectionc, _obsolete_intrinsic incubation periodc, _obsolete_invasinc, _obsolete_invasinc, _obsolete_invasivec, _obsolete_latencyc, _obsolete_livec, _obsolete_long-term non-progressionc, _obsolete_medicinec, _obsolete_membrane invaginationc, _obsolete_mobile genetic elementc, _obsolete_mode of transmissionc, _obsolete_modulation of inflammatory responsec, _obsolete_morbidityc, _obsolete_mortalityc, _obsolete_nonspecific adherencec, _obsolete_objectc, _obsolete_opportunistic pathogenc, _obsolete_oral-fecal transmissionc, _obsolete_outbreakc, _obsolete_pandemicc, _obsolete_pandemic spread of diseasec, _obsolete_parasitec, _obsolete_passage through cell membranec, _obsolete_pathogenc, _obsolete_pathogen adherence to host cellc, _obsolete_pathogen evasion of host immune responsec, _obsolete_pathogen life cyclec, _obsolete_pathogen life cycle stagec, _obsolete_pathogen outbreakc, _obsolete_pathogen spread through hostc, _obsolete_pathogen-induced apoptosisc, _obsolete_pathogen-induced necrosisc, _obsolete_pathogenesisc, _obsolete_pathogenicityc, _obsolete_pathogenicity islandc, _obsolete_penetration of epithelial barrierc, _obsolete_penetration of host cellc, _obsolete_penetration via injury of epithelial barrierc, _obsolete_phase variationc, _obsolete_prevalencec, _obsolete_prevention of infectionc, _obsolete_primary pathogenc, _obsolete_prionc, _obsolete_processc, _obsolete_progression ratec, _obsolete_protectivec, _obsolete_qualityc, _obsolete_quality of hostc, _obsolete_quality of host populationc, _obsolete_quality of infectious diseasec, _obsolete_quality of pathogenc, _obsolete_rapid progressionc, _obsolete_refractorinessc, _obsolete_replicating biological material entityc, _obsolete_reservoirc, _obsolete_resist phagocytosis in subepithelial spacec, _obsolete_resistancec, _obsolete_rolec, _obsolete_route of entryc, _obsolete_septicemiac, _obsolete_seroprevalencec, _obsolete_serum resistancec, _obsolete_signc, _obsolete_specific adherencec, _obsolete_susceptibilityc, _obsolete_swollenc, _obsolete_symbiantc, _obsolete_symptomc, _obsolete_symptomatic hostc, _obsolete_temperaturec, _obsolete_therapeuticc, _obsolete_toxicityc, _obsolete_toxinc, _obsolete_transcytosisc, _obsolete_transmissionc, _obsolete_transport by bloodc, _obsolete_transport by lymphc, _obsolete_treatmentc, _obsolete_tropismc, _obsolete_utilization of membranous cell gatewayc, _obsolete_vaccinationc, _obsolete_vaccinec, _obsolete_vectorc, _obsolete_vertical transmissionc, _obsolete_viral latencyc, _obsolete_virulencec, _obsolete_virulence factorc, _obsolete_virus-induced cytopathogenesisc, _obsolete_zoonoticc, obsolete dependent continuantc

obsolete dependent continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000005

has super-classes
Obsolete Classc

occurrentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000003

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
entityc
has sub-classes
processc, process boundaryc, spatiotemporal regionc, temporal regionc
is in domain of
has participantop, occurs inop, preceded byop, precedesop
is in range of
participates inop, preceded byop, precedesop
is disjoint with
continuantc

one-dimensional continuant fiat boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000142

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
continuant fiat boundaryc
is disjoint with
two-dimensional continuant fiat boundaryc, zero-dimensional continuant fiat boundaryc

one-dimensional spatial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000026

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
spatial regionc
is disjoint with
two-dimensional spatial regionc, zero-dimensional spatial regionc, three-dimensional spatial regionc

one-dimensional temporal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000038

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
temporal regionc
has sub-classes
communicability periodc, incubation periodc, transmission periodc
is disjoint with
zero-dimensional temporal regionc

opportunistic infectious dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000406

This includes individuals who are immunocompromised or who have damaged barriers that normally protect against infection (e.g. skin).
has super-classes
infectious dispositionc
(inheres inop some organismc) and (realized inop only processc and (has partop some establishment of localization in hostc) and (has partop some transmission processc) and (has partop some appearance of disorderc and (not (occurs inop some immunocompetent organismc))))
is disjoint with
primary infectious dispositionc, zoonotic dispositionc, reverse zoonotic dispositionc, communicabilityc

opportunistic pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000654

is equivalent to
organismc and (has dispositionop some opportunistic infectious dispositionc)
has super-classes
infectious agentc

organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100026

is equivalent to
Virusesc or Bacteriac or Archaeac or Eukaryotac
has super-classes
material entityc
has sub-classes
Archaeac, Bacteriac, Eukaryotac, Virusesc, colonized hostc, hostc, immunocompetent organismc, immunodeficient organismc, immunosuppressed organismc, infected organismc, infectious agentc, infectious agent vectorc, long-term non-progressorc, potential host of infectious agentc, susceptible organismc, symbiontc
is disjoint with
fomitec, disinfectantc, antisepticc, disorderc

organism populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000509

The organism population may be delineated by spatio-temporal proximity or by demographic criteria such as age.
has super-classes
object aggregatec
has sub-classes
colonyc, diseased populationc, immune populationc, infected populationc, infectious agent populationc, normal resident microbiota populationc, susceptible populationc

parasitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000526

is equivalent to
organismc and (has roleop some parasite rolec)
has super-classes
symbiontc

parasite hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000536

is equivalent to
organismc and (has roleop some parasite host rolec)
has super-classes
hostc

parasite host rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000413

The role is realized in processes that result in the parasite's growth, survival, or fitness advantage or in the host's growth, survival, or fitness reduction.
has super-classes
symbiont host rolec
inheres inop some organismc and (part ofop some extended organismc and (has partop some parasitec))
is disjoint with
definitive host rolec, intermediate host rolec, paratenic host rolec, dead-end host rolec

parasite rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000403

In the medical community, the term 'parasite' is used with the narrower meaning of eukaryotic pathogen.
has super-classes
symbiont rolec
is disjoint with
mutualist rolec, commensal rolec

parasitic dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000667

has super-classes
dispositionc

paratenic hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000534

is equivalent to
organismc and (has roleop some paratenic host rolec)
has super-classes
hostc

paratenic host rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000411

The role is realized in developmental processes of the host's partner in symbiosis.
has super-classes
symbiont host rolec
is disjoint with
definitive host rolec, intermediate host rolec, dead-end host rolec, parasite host rolec

passive immunity to infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000580

Passive immunity results from a passive immunization.
has super-classes
immunity to infectious agentc
is disjoint with
sterilizing immunity to infectious agentc, innate immunity to infectious agentc, humoral immunity to infectious agentc, leukocyte-mediated immunity to infectious agentc, acquired immunity to infectious agentc

passive immunization against infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000501

has super-classes
immunization against infectious agentc

pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000528

is equivalent to
material entityc and (has dispositionop some pathogenic dispositionc)
has super-classes
material entityc
has sub-classes
infectious agentc
is disjoint with
anatomical entityc, fomitec, disinfectantc, antisepticc, immunodeficiencyc

pathogen hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000538

is equivalent to
organismc and (has roleop some pathogen host rolec)
has super-classes
hostc
has sub-classes
infectious agent hostc

pathogen host rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000415

Bearing the infectious agent host role implies bearing the pathogen host role, but the reverse is not true. See comment for infectious agent host role.
has super-classes
host rolec
inheres inop some organismc and (part ofop some extended organismc and (has partop some pathogenc))
has sub-classes
infectious agent host rolec
is disjoint with
symbiont host rolec

pathogen rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000405

Clostridium botulinum is an example of an entity with the capability to bear the pathogen role but that does not have the capability to bear the infectious agent role or the parasite role. The influenza viruses are examples of organisms that can bear both the infectious agent and pathogen roles.
has super-classes
rolec
inheres inop some pathogenc
has sub-classes
infectious agent rolec
is disjoint with
symbiont rolec, infectious agent transporter rolec, reservoir of infectious agent rolec, infectious agent portal of entry rolec, infectious agent portal of exit rolec, disinfectant rolec, antiseptic rolec, primary infection rolec, secondary infection rolec, host rolec, source of infection rolec

pathogenic dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000450

The use of 'initiates' is intended to convey that a pathogenic disposition is realized when processes resulting in a disorder begin because of some action on the part of the bearer of the disposition. By this interpretation of 'initiates', disorder-causing entities such as glass, UV light, and toxins do not have a pathogenic disposition.
has super-classes
dispositionc
(inheres inop some material entityc) and (realized inop only processc and (results in formation ofop some disorderc))
has sub-classes
human pathogenicity dispositionc, infectious dispositionc
is disjoint with
virulence factor dispositionc, toxin dispositionc, adhesion dispositionc, invasion dispositionc, antimicrobial dispositionc, antiviral dispositionc, antifungal dispositionc, antibacterial dispositionc, antiparasitic dispositionc, protective resistancec, invasive dispositionc, collective dispositionc, contagiousnessc, immunocompetencec, immunosuppressive dispositionc, disposition to form a non-parasitic colonyc, transmissibility dispositionc, diseasec

pathologic immunosuppressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000612

has super-classes
immunosuppressionc
has sub-classes
drug-based immunosuppressionc, infection-based immunosuppressionc

pathologically immunosuppressed organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0001005

is equivalent to
immunosuppressed organismc and (participates inop some pathologic immunosuppressionc)
has super-classes
immunosuppressed organismc
has sub-classes
immunosuppressed organism experiencing drug-based immunosuppressionc, immunosuppressed organism experiencing infection-based immunosuppressionc

physiologic immunosuppressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000611

has super-classes
immunosuppressionc

potential host of infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000595

is equivalent to
organismc and (has dispositionop some realized inop some realizesop some infectious agent host rolec)
has super-classes
organismc

pregnancy-induced immunosuppressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000644

has super-classes
immunosuppressionc

primary immunodeficiencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000651

has super-classes
immunodeficiencyc
is disjoint with
acquired immunodeficiencyc

primary infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000566

is equivalent to
infectious disorderc and (has roleop some primary infection rolec)
has super-classes
infectious disorderc
is disjoint with
secondary infectionc

primary infection rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000434

The role is realized in a process by which the infectious disorder is established in the host.
has super-classes
rolec
inheres inop some infectious disorderc
is disjoint with
symbiont rolec, pathogen rolec, infectious agent transporter rolec, reservoir of infectious agent rolec, infectious agent portal of entry rolec, infectious agent portal of exit rolec, disinfectant rolec, antiseptic rolec, secondary infection rolec, host rolec, source of infection rolec

primary infectious dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000407

A pathogen with a primary infectious disposition can cause disease or death in both immunocompromised and immunocompetent hosts.
is equivalent to
infectious dispositionc and (realized inop only processc and (has partop some establishment of localization in hostc) and (has partop some transmission processc) and (has partop some appearance of disorderc and (occurs inop some immunocompetent organismc)))
has super-classes
infectious dispositionc
is disjoint with
opportunistic infectious dispositionc, zoonotic dispositionc, reverse zoonotic dispositionc, communicabilityc

primary pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000530

is equivalent to
organismc and (has dispositionop some primary infectious dispositionc)
has super-classes
infectious agentc

processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000015

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
occurrentc
has sub-classes
appearance of disorderc, biological regulationc, biological_processc, disease coursec, historyc, host exposure to infectious agentc, immunization against infectious agentc, immunosuppressionc, infectious disease epidemicc, infectious disease pandemicc, life-death temporal boundaryc, process of establishing an infectionc, process profilec, process that results in deathc, productionc, sepsisc, transition to clinical abnormalityc, transmission processc
is in domain of
realizesop, regulatesop
is in range of
capable ofop, realized inop, regulatesop
is disjoint with
temporal regionc, spatiotemporal regionc, process boundaryc

process boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000035

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
occurrentc
is disjoint with
temporal regionc, spatiotemporal regionc, processc

process of establishing an infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000603

has super-classes
processc

process profilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000144

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
processc
is disjoint with
historyc

process that results in deathc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000657

has super-classes
processc

productionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000607

has super-classes
processc
has sub-classes
replicationc

protective resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000444

Examples include the following: CCR5 mutations protect T cells from HIV invasion. A tumor cell's resistance to chemotherapy protects the cell from damage by the drug (although this harms the patient). An insect's resistance to insecticide protects it from the insecticide.
has super-classes
dispositionc
inheres inop some material entityc
has sub-classes
resistance to drugc, resistance to infectious agentc
is disjoint with
virulence factor dispositionc, toxin dispositionc, adhesion dispositionc, invasion dispositionc, antimicrobial dispositionc, antiviral dispositionc, antifungal dispositionc, antibacterial dispositionc, antiparasitic dispositionc, pathogenic dispositionc, invasive dispositionc, collective dispositionc, contagiousnessc, immunocompetencec, immunosuppressive dispositionc, disposition to form a non-parasitic colonyc, transmissibility dispositionc, diseasec

qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000019

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
specifically dependent continuantc
has sub-classes
infection incidencec, infection incidence proportionc, infection incidence ratec, infection prevalencec, infectious agent seroprevalencec, infectious agent transmissibilityc, infectious disease endemicityc, infectious disease incidencec, infectious disease incidence proportionc, infectious disease incidence ratec, infectious disease lifetime prevalencec, infectious disease mortality ratec, infectious disease prevalencec, infectious disease sporadicityc, infectivityc, relational qualityc, susceptibilityc, virulencec
is in range of
has qualityop
is disjoint with
realizable entityc

re-emerging pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000643

has super-classes
infectious agentc

realizable entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000017

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
specifically dependent continuantc
has sub-classes
dispositionc, rolec
is in domain of
realized inop
is in range of
realizesop
is disjoint with
qualityc

relational qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000145

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
qualityc

release of infectious human pathogen in laboratoryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000600

has super-classes
host exposure to environment containing infectious agentc

replicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000608

has super-classes
productionc

reproductionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0000003

has super-classes
biological_processc
has sub-classes
FtsZ-dependent cytokinesisc

reservoir of infectious agent rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000424

The role is realized in a process that has as part life and multiplication processes of an infectious agent and a transmission process.
has super-classes
rolec
inheres inop some material entityc and (location ofop some infectious agentc)
is disjoint with
symbiont rolec, pathogen rolec, infectious agent transporter rolec, infectious agent portal of entry rolec, infectious agent portal of exit rolec, disinfectant rolec, antiseptic rolec, primary infection rolec, secondary infection rolec, host rolec, source of infection rolec

resistance to drugc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000445

has super-classes
protective resistancec
has sub-classes
antibiotic resistancec
is disjoint with
resistance to infectious agentc

resistance to infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000446

has super-classes
protective resistancec
inheres inop some organismc
has sub-classes
genetic resistance to infectious agentc, immunity to infectious agentc
is disjoint with
resistance to drugc

resistant entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000571

is equivalent to
material entityc and (has dispositionop some protective resistancec)
has super-classes
material entityc
is disjoint with
immunodeficiencyc

reverse zoonosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000653

is equivalent to
infectious diseasec and (has_material_basis_inop some infectious disorderc and (has partop some infectious agentc and (has dispositionop some reverse zoonotic dispositionc))) and (inheres inop some organismc and (part ofop some extended organismc and (has partop some infectious disorderc and (has partop some infectious agentc and (has dispositionop some reverse zoonotic dispositionc))))) and (has_material_basis_inop only infectious disorderc and (has partop some infectious agentc and (has dispositionop some reverse zoonotic dispositionc))) and (inheres inop only organismc and (part ofop some extended organismc and (has partop some infectious disorderc and (has partop some infectious agentc and (has dispositionop some reverse zoonotic dispositionc)))))
has super-classes
infectious diseasec
is disjoint with
zoonosisc

reverse zoonotic dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000454

An infectious disease associated with an infectious agent that bears the reverse zoonotic disposition is referred to as a reverse zoonosis.
has super-classes
infectious dispositionc
is disjoint with
opportunistic infectious dispositionc, primary infectious dispositionc, zoonotic dispositionc, communicabilityc

rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000023

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
realizable entityc
has sub-classes
antiseptic rolec, disinfectant rolec, host rolec, infectious agent portal of entry rolec, infectious agent portal of exit rolec, infectious agent transporter rolec, pathogen rolec, primary infection rolec, reservoir of infectious agent rolec, secondary infection rolec, source of infection rolec, symbiont rolec
is in range of
has roleop
is disjoint with
dispositionc

secondary infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000567

is equivalent to
infectious disorderc and (has roleop some secondary infection rolec)
has super-classes
infectious disorderc
is disjoint with
primary infectionc

secondary infection rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000435

The role is realized in a process by which the infectious disorder is established in the host.
has super-classes
rolec
inheres inop some infectious disorderc
is disjoint with
symbiont rolec, pathogen rolec, infectious agent transporter rolec, reservoir of infectious agent rolec, infectious agent portal of entry rolec, infectious agent portal of exit rolec, disinfectant rolec, antiseptic rolec, primary infection rolec, host rolec, source of infection rolec

sepsisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000636

has super-classes
processc
has sub-classes
severe sepsisc

severe sepsisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000637

has super-classes
sepsisc

Shigellosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000648

has super-classes
infectionc

simple infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000642

has super-classes
infectionc

sitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000029

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
immaterial entityc
is disjoint with
spatial regionc, continuant fiat boundaryc

source of infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000665

is equivalent to
material entityc and (has roleop some source of infection rolec)
has super-classes
material entityc
is disjoint with
immunodeficiencyc

source of infection rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000635

The role is realized in a process that has as part a transmission process and a process by which the infectious agent or one of its offspring becomes part of a disorder in the host.
has super-classes
rolec
inheres inop some material entityc
is disjoint with
symbiont rolec, pathogen rolec, infectious agent transporter rolec, reservoir of infectious agent rolec, infectious agent portal of entry rolec, infectious agent portal of exit rolec, disinfectant rolec, antiseptic rolec, primary infection rolec, secondary infection rolec, host rolec

spatial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000006

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
immaterial entityc
has sub-classes
one-dimensional spatial regionc, three-dimensional spatial regionc, two-dimensional spatial regionc, zero-dimensional spatial regionc
is disjoint with
sitec, continuant fiat boundaryc

spatiotemporal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000011

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
occurrentc
is disjoint with
temporal regionc, processc, process boundaryc

specifically dependent continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000020

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
continuantc
has sub-classes
qualityc, realizable entityc
is in domain of
concretizesop
is in range of
bearer ofop, is concretized asop
is disjoint with
independent continuantc, generically dependent continuantc, independent continuantc, generically dependent continuantc

sterilizing immunity to infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000449

Sterilizing immunity is typically conferred by neutralizing antibodies.
has super-classes
immunity to infectious agentc
is disjoint with
innate immunity to infectious agentc, humoral immunity to infectious agentc, leukocyte-mediated immunity to infectious agentc, passive immunity to infectious agentc, acquired immunity to infectious agentc

subclinical infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000570

has super-classes
infectionc

subsetc back to ToC or Class ToC

IRI: http://www.geneontology.org/formats/oboInOwl#Subset

is equivalent to
{ core }
has super-classes
data about an ontology partc
has members
coreni

susceptibilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000467

Low susceptibility is often referred to as resistance. In this sense, resistance is a quality.
has super-classes
qualityc
inheres inop some material entityc
has sub-classes
drug susceptibilityc, susceptibility to infectious agentc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

susceptibility to infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000468

has super-classes
susceptibilityc
inheres inop some organismc
is disjoint with
drug susceptibilityc

susceptible organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000659

has super-classes
organismc

susceptible populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000514

has super-classes
organism populationc

symbiontc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000522

is equivalent to
organismc and (has roleop some symbiont rolec)
has super-classes
organismc
has sub-classes
commensalc, mutualistc, obligatory symbiontc, parasitec

symbiont host rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000408

The relevant environmental resources may include nutrient resources, warmth, or moisture.
has super-classes
host rolec
inheres inop some organismc and (part ofop some extended organismc and (has partop some symbiontc))
has sub-classes
dead-end host rolec, definitive host rolec, intermediate host rolec, parasite host rolec, paratenic host rolec
is disjoint with
pathogen host rolec

symbiont rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000400

The role is realized in symbiosis.
has super-classes
rolec
inheres inop some organismc and (participates inop some symbiosis, encompassing mutualism through parasitismc)
has sub-classes
commensal rolec, mutualist rolec, parasite rolec
is disjoint with
pathogen rolec, infectious agent transporter rolec, reservoir of infectious agent rolec, infectious agent portal of entry rolec, infectious agent portal of exit rolec, disinfectant rolec, antiseptic rolec, primary infection rolec, secondary infection rolec, host rolec, source of infection rolec

symbiosis, encompassing mutualism through parasitismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044403

has super-classes
multi-organism processc
has sub-classes
commensalismc, mutualismc

symptomc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000020

has super-classes
entityc

symptomatic host of infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000573

has super-classes
infectious agent hostc
has roleop some infectious agent host rolec

synonymc back to ToC or Class ToC

IRI: http://www.geneontology.org/formats/oboInOwl#Synonym

has super-classes
data about an ontology partc

synonym typec back to ToC or Class ToC

IRI: http://www.geneontology.org/formats/oboInOwl#SynonymType

has super-classes
data about an ontology partc

systemic infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000474

has super-classes
infectionc
is disjoint with
local infectionc

T cell receptor complexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0042101

has super-classes
macromolecular complexc

temporal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000008

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
occurrentc
has sub-classes
one-dimensional temporal regionc, zero-dimensional temporal regionc
is disjoint with
spatiotemporal regionc, processc, process boundaryc

three-dimensional spatial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000028

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
spatial regionc
is disjoint with
two-dimensional spatial regionc, zero-dimensional spatial regionc, one-dimensional spatial regionc

toxinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000549

is equivalent to
molecular entityc and (has dispositionop some toxin dispositionc)
has super-classes
molecular entityc
has sub-classes
cytotoxinc, endotoxinc, exotoxinc, neurotoxinc

toxin dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000426

has super-classes
dispositionc
inheres inop some molecular entityc
has sub-classes
_obsolete_endotoxin dispositionc, exotoxin dispositionc
is disjoint with
virulence factor dispositionc, adhesion dispositionc, invasion dispositionc, antimicrobial dispositionc, antiviral dispositionc, antifungal dispositionc, antibacterial dispositionc, antiparasitic dispositionc, protective resistancec, pathogenic dispositionc, invasive dispositionc, collective dispositionc, contagiousnessc, immunocompetencec, immunosuppressive dispositionc, disposition to form a non-parasitic colonyc, transmissibility dispositionc, diseasec

transition to clinical abnormalityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0001002

has super-classes
processc

transmissibility dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000655

The disposition is realized in a transmission process.
has super-classes
dispositionc
(inheres inop some pathogenc) and (realized inop only transmission processc)
is disjoint with
virulence factor dispositionc, toxin dispositionc, adhesion dispositionc, invasion dispositionc, antimicrobial dispositionc, antiviral dispositionc, antifungal dispositionc, antibacterial dispositionc, antiparasitic dispositionc, protective resistancec, pathogenic dispositionc, invasive dispositionc, collective dispositionc, contagiousnessc, immunocompetencec, immunosuppressive dispositionc, disposition to form a non-parasitic colonyc, diseasec

transmission periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000593

has super-classes
one-dimensional temporal regionc

transmission processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/TRANS_0000000

has super-classes
processc
has sub-classes
horizontal pathogen transmission processc, indirectc

trichomoniasisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000646

has super-classes
infectionc

two-dimensional continuant fiat boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000146

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
continuant fiat boundaryc
is disjoint with
one-dimensional continuant fiat boundaryc, zero-dimensional continuant fiat boundaryc

two-dimensional spatial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000009

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
spatial regionc
is disjoint with
zero-dimensional spatial regionc, one-dimensional spatial regionc, three-dimensional spatial regionc

vaccination against infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000499

has super-classes
active immunization against infectious agentc

variolationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000500

has super-classes
active immunization against infectious agentc

vehicle of infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000543

is equivalent to
material entityc and (has roleop some infectious agent vehicle rolec)
has super-classes
material entityc
has sub-classes
fomitec
is disjoint with
immunodeficiencyc

viremiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000505

is equivalent to
infectionc and (has partop some infectious agentc and Virusesc and (located inop some bloodc))
has super-classes
extracellular infectionc
is disjoint with
intracellular infectionc, bacteremiac

viricidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000564

is equivalent to
material entityc and (has dispositionop some antiviral dispositionc and (realized inop only life-death temporal boundaryc))
has super-classes
antiviralc

virionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000508

has super-classes
Virusesc

virulencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000466

This quality is measured by the proportion of clinically apparent cases that are severe or fatal.
has super-classes
qualityc
inheres inop some infectious agentc
is disjoint with
infectious agent transmissibilityc, infectivityc, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

virulence factorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000547

is equivalent to
molecular entityc and (has dispositionop some virulence factor dispositionc)
has super-classes
molecular entityc

virulence factor dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000425

The virulence factor disposition is typically realized in processes that improve survival of the pathogen in a host, increase the likelihood of transmission to a host, or cause pathological processes in a host.
has super-classes
dispositionc
inheres inop some molecular entityc
is disjoint with
toxin dispositionc, adhesion dispositionc, invasion dispositionc, antimicrobial dispositionc, antiviral dispositionc, antifungal dispositionc, antibacterial dispositionc, antiparasitic dispositionc, protective resistancec, pathogenic dispositionc, invasive dispositionc, collective dispositionc, contagiousnessc, immunocompetencec, immunosuppressive dispositionc, disposition to form a non-parasitic colonyc, transmissibility dispositionc, diseasec

Virusesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10239

has super-classes
organismc
has sub-classes
virionc

zero-dimensional continuant fiat boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000147

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
continuant fiat boundaryc
is disjoint with
one-dimensional continuant fiat boundaryc, two-dimensional continuant fiat boundaryc

zero-dimensional spatial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000018

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
spatial regionc
is disjoint with
two-dimensional spatial regionc, one-dimensional spatial regionc, three-dimensional spatial regionc

zero-dimensional temporal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000148

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
temporal regionc
is disjoint with
one-dimensional temporal regionc

zoonosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000568

is equivalent to
infectious diseasec and (has_material_basis_inop some infectious disorderc and (has partop some infectious agentc and (has dispositionop some zoonotic dispositionc))) and (inheres inop some organismc and (part ofop some extended organismc and (has partop some infectious disorderc and (has partop some infectious agentc and (has dispositionop some zoonotic dispositionc))))) and (has_material_basis_inop only infectious disorderc and (has partop some infectious agentc and (has dispositionop some zoonotic dispositionc))) and (inheres inop only organismc and (part ofop some extended organismc and (has partop some infectious disorderc and (has partop some infectious agentc and (has dispositionop some zoonotic dispositionc)))))
has super-classes
infectious diseasec
is disjoint with
reverse zoonosisc

zoonotic dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000453

An infectious disease associated with an infectious agent that bears the zoonotic disposition is referred to as a zoonosis.
has super-classes
infectious dispositionc
is disjoint with
opportunistic infectious dispositionc, primary infectious dispositionc, reverse zoonotic dispositionc, communicabilityc

Object Properties

2D boundary ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002000

is inverse of
has 2D boundaryop

bearer ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000053

capable ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002215

has domain
independent continuantc
has range
processc

concretizesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000059

contains processop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000067

is defined by
http://purl.obolibrary.org/obo/bfo.owl
Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant
is inverse of
occurs inop

derives fromop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001000

is inverse of
derives intoop

derives intoop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001001

is inverse of
derives fromop

disposition ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000092

has super-properties
inheres inop
is inverse of
has dispositionop

function ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000079

has super-properties
inheres inop
has domain
functionc
is inverse of
has functionop

has 2D boundaryop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002002

has domain
material entityc
has range
immaterial entityc
is inverse of
2D boundary ofop

has dispositionop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000091

has super-properties
bearer ofop
has domain
independent continuantc
has range
dispositionc
is inverse of
disposition ofop

has functionop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000085

has super-properties
bearer ofop
has domain
independent continuantc
has range
functionc
is inverse of
function ofop

has memberop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002351

has characteristics: irreflexive

has super-properties
has partop
is inverse of
member ofop

has outputop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002234

has super-properties
has participantop

has partop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000051

has characteristics: transitive

has super-properties
top object propertyop
has sub-properties
has memberop
is inverse of
part ofop

has participantop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000057

has sub-properties
has outputop
has domain
occurrentc
has range
continuantc
is inverse of
participates inop

has qualityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000086

has super-properties
bearer ofop
has range
qualityc
is inverse of
quality ofop

has roleop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000087

has super-properties
bearer ofop
has domain
independent continuantc
has range
rolec
is inverse of
role ofop

has_material_basis_inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000664

has range
material entityc

inheres inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000052

has sub-properties
disposition ofop, function ofop, quality ofop, role ofop
is inverse of
bearer ofop

is concretized asop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000058

located inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001025

has characteristics: transitive

is inverse of
location ofop

location ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001015

has characteristics: transitive

is inverse of
located inop

member ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002350

has super-properties
part ofop
is inverse of
has memberop

negatively regulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002212

has super-properties
regulatesop

occurs inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000066

is defined by
http://purl.obolibrary.org/obo/bfo.owl
Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant
has domain
occurrentc
has range
independent continuantc
is inverse of
contains processop
has sub-property chains
part ofop o occurs inop
occurs inop o part ofop

part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000050

has characteristics: transitive

has sub-properties
member ofop
is inverse of
has partop

participates inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000056

has domain
continuantc
has range
occurrentc
is inverse of
has participantop

positively regulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002213

has super-properties
regulatesop

preceded byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000062

has characteristics: transitive

has domain
occurrentc
has range
occurrentc
is inverse of
precedesop

precedesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000063

has characteristics: transitive

has domain
occurrentc
has range
occurrentc
is inverse of
preceded byop

quality ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000080

has super-properties
inheres inop
is inverse of
has qualityop

realized inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000054

is defined by
http://purl.obolibrary.org/obo/bfo.owl
Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process
has domain
realizable entityc
has range
processc
is inverse of
realizesop

realizesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000055

is defined by
http://purl.obolibrary.org/obo/iao.owl
Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process
has domain
processc
has range
realizable entityc
is inverse of
realized inop

regulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002211

has characteristics: transitive

has sub-properties
negatively regulatesop, positively regulatesop
has domain
processc
has range
processc

results in formation ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002297

has super-properties
results_inop

results_inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000660

has sub-properties
results in formation ofop

role ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000081

has super-properties
inheres inop
is inverse of
has roleop

Named Individuals

axiom holds for all timesni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/RO_0001901

coreni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000224

belongs to
subsetc

defined classni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000420

belongs to
denotator typec

example to be eventually removedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000002

belongs to
curation status specificationc

failed exploratory termni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000103

belongs to
obsolescence reason specificationc

metadata completeni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000120

belongs to
curation status specificationc

metadata incompleteni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000123

belongs to
curation status specificationc

named class expressionni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000421

belongs to
denotator typec

organizational termni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000121

belongs to
curation status specificationc

pending final vettingni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000125

belongs to
curation status specificationc

placeholder removedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000226

belongs to
obsolescence reason specificationc

ready for releaseni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000122

belongs to
curation status specificationc

relation has no temporal argumentni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/RO_0001902

requires discussionni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000428

belongs to
curation status specificationc

term importedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000228

belongs to
obsolescence reason specificationc

term splitni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000229

belongs to
obsolescence reason specificationc

terms mergedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000227

belongs to
obsolescence reason specificationc

to be replaced with external ontology termni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000423

belongs to
curation status specificationc

uncuratedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000124

belongs to
curation status specificationc

universalni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000410

belongs to
denotator typec

Annotation Properties

alternative termap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000118

is defined by
http://purl.obolibrary.org/obo/iao.owl

antisymmetric propertyap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000427

BFO CLIF specification labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000180

has super-properties
labelap

BFO OWL specification labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000179

has super-properties
labelap

commentap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#comment

contributorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/contributor

coverageap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/coverage

creatorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/creator

curator noteap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000232

is defined by
http://purl.obolibrary.org/obo/iao.owl

dateap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/date

default languageap back to ToC or Annotation Property ToC

IRI: http://protege.stanford.edu/plugins/owl/protege#defaultLanguage

definitionap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000115

is defined by
http://purl.obolibrary.org/obo/iao.owl

definition sourceap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000119

is defined by
http://purl.obolibrary.org/obo/iao.owl

descriptionap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/description

editor noteap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000116

is defined by
http://purl.obolibrary.org/obo/iao.owl

editor preferred termap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000111

is defined by
http://purl.obolibrary.org/obo/iao.owl

elucidationap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000600

is defined by
http://purl.obolibrary.org/obo/iao.owl

example of usageap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000112

is defined by
http://purl.obolibrary.org/obo/iao.owl

expand assertion toap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000425

expand expression toap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000424

first order logic expressionap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000426

formatap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/format

has alternative idap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasAlternativeId

has associated axiom(fol)ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000602

is defined by
http://purl.obolibrary.org/obo/iao.owl

has associated axiom(nl)ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000601

is defined by
http://purl.obolibrary.org/obo/iao.owl

has axiom labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0010000

is defined by
http://purl.obolibrary.org/obo/iao.owl

has curation statusap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000114

has db xrefap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasDbXref

has definitionap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasDefinition

has exact synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasExactSynonym

has ID digit countap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000596

has ID policy forap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000598

has ID prefixap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000599

has ID range allocated toap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000597

has o b o namespaceap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasOBONamespace

has obsolescence reasonap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000231

has related synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym

has u r iap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasURI

homepageap back to ToC or Annotation Property ToC

IRI: http://xmlns.com/foaf/0.1/homepage

identifierap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/identifier

imported fromap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000412

is defined by
http://purl.obolibrary.org/obo/iao.owl

in branchap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000113

in subsetap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#inSubset

is allocated id rangeap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000603

is defined byap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#isDefinedBy

is denotator typeap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000411

labelap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#label

languageap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/language

memberap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/member

OBO foundry unique labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000589

ontology term requesterap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000234

The 'term requester' can credit the person, organization or project who request the ontology term.

pageap back to ToC or Annotation Property ToC

IRI: http://xmlns.com/foaf/0.1/page

publisherap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/publisher

relationap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/relation

rightsap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/rights

see alsoap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#seeAlso

shorthandap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#shorthand

sourceap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/source

subjectap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/subject

temporal interpretationap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001900

term editorap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000117

is defined by
http://purl.obolibrary.org/obo/iao.owl

term replaced byap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0100001

term tracker itemap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000233

The 'tracker item' can associate a tracker with a specific ontology term.

titleap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/title

typeap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/type

General Axioms

All Disjoint Classes back to ToC

sterilizing immunity to infectious agentc, innate immunity to infectious agentc, humoral immunity to infectious agentc, leukocyte-mediated immunity to infectious agentc, passive immunity to infectious agentc, acquired immunity to infectious agentc

All Disjoint Classes back to ToC

independent continuantc, specifically dependent continuantc, generically dependent continuantc

All Disjoint Classes back to ToC

infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

All Disjoint Classes back to ToC

mutualist rolec, commensal rolec, parasite rolec

All Disjoint Classes back to ToC

spatial regionc, sitec, continuant fiat boundaryc

All Disjoint Classes back to ToC

temporal regionc, spatiotemporal regionc, processc, process boundaryc

All Disjoint Classes back to ToC

one-dimensional continuant fiat boundaryc, two-dimensional continuant fiat boundaryc, zero-dimensional continuant fiat boundaryc

All Disjoint Classes back to ToC

two-dimensional spatial regionc, zero-dimensional spatial regionc, one-dimensional spatial regionc, three-dimensional spatial regionc

All Disjoint Classes back to ToC

definitive host rolec, intermediate host rolec, paratenic host rolec, dead-end host rolec, parasite host rolec

All Disjoint Classes back to ToC

opportunistic infectious dispositionc, primary infectious dispositionc, zoonotic dispositionc, reverse zoonotic dispositionc, communicabilityc

Namespace Declarations back to ToC

default namespace
http://purl.obolibrary.org/obo/ido.owl#
2017-11-03
http://purl.obolibrary.org/obo/ido/2017-11-03/
axiom
http://purl.obolibrary.org/obo/bfo/axiom/
dc
http://purl.org/dc/elements/1.1/
docs
http://purl.obolibrary.org/obo/ro/docs/
example-com
http://example.com/
foaf
http://xmlns.com/foaf/0.1/
obo
http://purl.obolibrary.org/obo/
oboInOwl
http://www.geneontology.org/formats/oboInOwl#
owl
http://www.w3.org/2002/07/owl#
papers
http://www.referent-tracking.com/_RTU/papers/
protege
http://protege.stanford.edu/plugins/owl/protege#
pubmed
http://www.ncbi.nlm.nih.gov/pubmed/
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
s9uug5qmaws
https://groups.google.com/d/msg/bfo-owl-devel/s9Uug5QmAws/
xsd
http://www.w3.org/2001/XMLSchema#

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni.