UniProt RDF schema ontology

Description of the existence of related protein sequences produced by alternative splicing of the same gene or by the use of alternative initiation codons.

has super-classes: Annotation^c
has sub-classes: Alternative Initiation^c, Alternative Promoter Usage^c, Alternative Splicing^c, Ribosomal Frameshifting^c

Alternative Promoter Usage^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Alternative_Promoter_Usage_Annotation

is defined by: http://purl.uniprot.org/core/

has super-classes: Alternative Products^c

Alternative Splicing^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Alternative_Splicing_Annotation

is defined by: http://purl.uniprot.org/core/

has super-classes: Alternative Products^c

Annotation^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Annotation

is defined by: http://purl.uniprot.org/core/

Description of a resource on a specific topic.

has sub-classes: Activity Regulation^c, Allergen^c, Alternative Products^c, Biophysicochemical Property^c, Biotechnology^c, Catalytic Activity Annotation^c, Caution^c, Cofactor^c, Developmental Stage^c, Disease Annotation^c, Disruption Phenotype^c, Domain^c, Function^c, Induction^c, PTM^c, Pathway annotation^c, Pharmaceutical^c, Polymorphism^c, RNA Editing^c, Sequence Annotation^c, Sequence Caution^c, Similarity^c, Subcellular Location Annotation^c, Subunit^c, Tissue Specificity^c, Toxic Dose^c
is in range of: annotation^op, mapped annotation^op

Attribution^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Attribution

is defined by: http://purl.uniprot.org/core/

Entity used to attach evidence or provenance to a rdf statement via reification.

is in domain of: manual^dp, source^op
is in range of: attribution^op

Binding Site^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Binding_Site_Annotation

is defined by: http://purl.uniprot.org/core/

Binding site for any chemical group (co-enzyme, prosthetic group, etc.).

has super-classes: Site^c

Biophysicochemical Property^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Biophysicochemical_Annotation

is defined by: http://purl.uniprot.org/core/

Biophysical and physicochemical data such as pH dependence, temperature dependence, kinetic parameters, redox potentials, and maximal absorption.

has super-classes: Annotation^c
has sub-classes: Absorption^c, Kinetics^c, Redox Potential^c, Temperature Dependence^c, pH Dependence^c

Biotechnology^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Biotechnology_Annotation

is defined by: http://purl.uniprot.org/core/

Description of the use of a specific protein in a biotechnological process.

has super-classes: Annotation^c

Book Citation^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Book_Citation

is defined by: http://purl.uniprot.org/core/

A chapter from a book.

has super-classes: Published Citation^c; name^dp exactly 1
is in domain of: editor^dp, publisher^dp

Calcium Binding^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Calcium_Binding_Annotation

is defined by: http://purl.uniprot.org/core/

Extent of a calcium-binding region.

has super-classes: Region^c

Catalytic Activity^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Catalytic_Activity

is defined by: http://purl.uniprot.org/core/

The catalytic activity of an enzyme.

is in domain of: catalyzed reaction^op, enzyme class^op
is in range of: catalytic activity^op, catalytic activity^op

Catalytic Activity Annotation^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Catalytic_Activity_Annotation

is defined by: http://purl.uniprot.org/core/

Description of the reactions catalyzed by an enzyme.

has super-classes: Annotation^c
is in domain of: catalytic activity^op, catalyzed physiological reaction^op

Caution^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Caution_Annotation

is defined by: http://purl.uniprot.org/core/

Warning about possible errors and/or grounds for confusion.

has super-classes: Annotation^c

Cellular Component^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Cellular_Component

is defined by: http://purl.uniprot.org/core/

has super-classes: Subcellular Location^c
is in range of: cellular component^op

Chain^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Chain_Annotation

is defined by: http://purl.uniprot.org/core/

Extent of a polypeptide chain in the mature protein.

has super-classes: Molecule Processing^c

Citation^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Citation

is defined by: http://purl.uniprot.org/core/

Description of a publication from which data was obtained.

has super-classes: (date^dp some date) or (date^dp some g year) or (date^dp some g year month)
has sub-classes: Published Citation^c, Unpublished Citation^c
is in domain of: author^dp, authorsIncomplete^dp, group^dp, locator^dp, published in^op, title^dp
is in range of: citation^op, mapped citation^op
is disjoint with: Protein^c, Sequence^c

Citation Statement^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Citation_Statement

is defined by: http://purl.uniprot.org/core/

The relationship between a resource and a citation.

has super-classes: statement^c; context^op only Strain^c or Tissue^c or Transposon^c
is in domain of: context^op, scope^dp

Cluster (UniRef)^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Cluster

is defined by: http://purl.uniprot.org/core/

Cluster of proteins with similar sequences.

has super-classes: thing^c; member^op only Sequence^c
is in domain of: common taxon^op, identity^dp, member^op, some members classified with^op
is in range of: member of^op, representative for^op, seed for^op
is disjoint with: Protein^c, Sequence^c

Cofactor^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Cofactor_Annotation

is defined by: http://purl.uniprot.org/core/

Description of an enzyme cofactor.

has super-classes: Annotation^c
is in domain of: cofactor^op

Coiled-Coil^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Coiled_Coil_Annotation

is defined by: http://purl.uniprot.org/core/

Extent of a coiled-coil region.

has super-classes: Region^c

Compositionally Biased Region^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Compositional_Bias_Annotation

is defined by: http://purl.uniprot.org/core/

Extent of a compositionally biased region.

has super-classes: Region^c

Concept^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Concept

is defined by: http://purl.uniprot.org/core/

A concept used to classify resources.

has super-classes: class^c; replaces^op only Concept^c
is in range of: classified with^op

Crosslink^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Cross-link_Annotation

is defined by: http://purl.uniprot.org/core/

Posttranslationally formed amino acid bonds.

has super-classes: Modification^c

Database (description of)^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Database

is defined by: http://purl.uniprot.org/core/

Metadata for a life science database.

has super-classes: class^c
is in domain of: URI template^dp, URL pattern^dp, URL template^dp, abstract^dp, category^op, curated^dp, implicit^dp, link is explicit^dp
is in range of: database^op

Developmental Stage^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Developmental_Stage_Annotation

is defined by: http://purl.uniprot.org/core/

Description of the developmentally-specific expression of a protein.

has super-classes: Annotation^c

Disease^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Disease

is defined by: http://purl.uniprot.org/core/

is in range of: disease^op

Disease Annotation^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Disease_Annotation

is defined by: http://purl.uniprot.org/core/

Description of the diseases associated with a deficiency of a protein.

has super-classes: Annotation^c
is in domain of: disease^op

Disruption Phenotype^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Disruption_Phenotype_Annotation

is defined by: http://purl.uniprot.org/core/

has super-classes: Annotation^c

Disulfide Bond^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Disulfide_Bond_Annotation

is defined by: http://purl.uniprot.org/core/

Describes residues which are linked by an intra-chain disulfide bond. If the endpoints are identical, the disulfide bond is an interchain one.

has super-classes: Modification^c

DNA^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/DNA

is defined by: http://purl.uniprot.org/core/

has super-classes: Molecule^c
has sub-classes: Genomic DNA^c, Other DNA^c, Unassigned DNA^c

DNA Binding^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Nucleotide_Binding_Annotation

is defined by: http://purl.uniprot.org/core/

Extent of a DNA-binding region.

has super-classes: Region^c

Domain^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Domain_Annotation

is defined by: http://purl.uniprot.org/core/

Description of the domain structure of a protein.

has super-classes: Annotation^c

Domain Assignment Statement^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Domain_Assignment_Statement

is defined by: http://purl.uniprot.org/core/

The relationship between a protein and a protein domain.

has super-classes: statement^c

Domain Extent^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Domain_Extent_Annotation

is defined by: http://purl.uniprot.org/core/

Extent of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.

has super-classes: Region^c

Electronic Citation^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Electronic_Citation

is defined by: http://purl.uniprot.org/core/

An electronic publication.

has super-classes: Published Citation^c; name^dp exactly 1

Endpoint Statement^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Endpoint_Statement

is defined by: http://purl.uniprot.org/core/

Metadata for an endpoint of a range on a sequence.

has super-classes: statement^c

Enzyme^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Enzyme

is defined by: http://purl.uniprot.org/core/

A specific catalytic activity, defined by the Enzyme Commission of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB).

has super-classes: replaces^op only Enzyme^c; replaced by^op only Enzyme^c
is in domain of: catalytic activity^op, cofactorLabel^dp
is in range of: enzyme^op, enzyme class^op

Enzyme Regulation^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Enzyme_Regulation_Annotation

is defined by: http://purl.uniprot.org/core/

The use of this class has been replaced by Activity_Regulation_Annotation

Erroneous Gene Model Prediction^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Erroneous_Gene_Model_Prediction_Annotation

is defined by: http://purl.uniprot.org/core/

has super-classes: Sequence Caution^c

Erroneous Initiation^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Erroneous_Initiation_Annotation

is defined by: http://purl.uniprot.org/core/

has super-classes: Sequence Caution^c

Erroneous Termination^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Erroneous_Termination_Annotation

is defined by: http://purl.uniprot.org/core/

has super-classes: Sequence Caution^c

Erroneous Translation^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Erroneous_Translation_Annotation

is defined by: http://purl.uniprot.org/core/

has super-classes: Sequence Caution^c

Experimental Information^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Experimental_Information_Annotation

is defined by: http://purl.uniprot.org/core/

has super-classes: Sequence Annotation^c
has sub-classes: Mass^c, Mutagenesis Site^c, Non-consecutive Residues^c, Non-terminal Residue^c, Sequence Conflict^c, Unsure Residue^c

External Sequence^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/External_Sequence

is defined by: http://purl.uniprot.org/core/

The protein described in the linked record is an alternative splice form of the same gene product as described in this record. The function between the two isoforms is highly divergent.

has super-classes: Known Sequence^c
is in domain of: translated from^op
is in range of: conflicting sequence^op

Family Membership Statement^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Family_Membership_Statement

Frameshift^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Frameshift_Annotation

is defined by: http://purl.uniprot.org/core/

has super-classes: Sequence Caution^c

Function^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Function_Annotation

is defined by: http://purl.uniprot.org/core/

General description of the functions of a protein.

has super-classes: Annotation^c

Gene^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Gene

is defined by: http://purl.uniprot.org/core/

has super-classes: thing^c; concept^c; pref label^op exactly 1 Gene^c
is in domain of: ORF name^dp, locus name^op
is in range of: encoded by^op

Genomic DNA^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Genomic_DNA

is defined by: http://purl.uniprot.org/core/

has super-classes: DNA^c

Genomic RNA^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Genomic_RNA

is defined by: http://purl.uniprot.org/core/

has super-classes: RNA^c

Glycosylation Site^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Glycosylation_Annotation

is defined by: http://purl.uniprot.org/core/

Describes the occurrence of the attachment of a glycan (mono- or polysaccharide) to a residue of a protein.

has super-classes: Modification^c

Helix^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Helix_Annotation

is defined by: http://purl.uniprot.org/core/

Helical regions within the experimentally determined protein structure

has super-classes: Secondary Structure^c

Induction^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Induction_Annotation

is defined by: http://purl.uniprot.org/core/

Description of the compounds or conditions that stimulate the synthesis of a protein.

has super-classes: Annotation^c

Initiator Methionine^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Initiator_Methionine_Annotation

is defined by: http://purl.uniprot.org/core/

Indicates that the initiator methionine has been cleaved off and is not shown in the sequence.

has super-classes: Molecule Processing^c

Interaction^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Interaction

is defined by: http://purl.uniprot.org/core/

Description of a protein-protein interaction.

has sub-classes: Non self interaction^c, Self protein interaction^c
is in domain of: experiments^dp, negative^dp, participant^op, xeno^dp
is in range of: interaction^op

Interaction participant^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Participant

is defined by: http://purl.uniprot.org/core/

A participant in a protein-protein interaction.

is in range of: participant^op

INTRAMEM^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Intramembrane_Annotation

is defined by: http://purl.uniprot.org/core/

Extent of a region located in a membrane without crossing it

has super-classes: Region^c

Journal^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Journal

is defined by: http://purl.uniprot.org/core/

has super-classes: thing^c
is in domain of: shortCoden^dp
is in range of: published in^op

Journal Citation^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Journal_Citation

is defined by: http://purl.uniprot.org/core/

An article published in a journal.

has super-classes: Published Citation^c; name^dp exactly 1

Kinetics^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Kinetics_Annotation

is defined by: http://purl.uniprot.org/core/

Mentions the Michaelis-Menten constant (KM) and maximal velocity (Vmax) of enzymes.

has super-classes: Biophysicochemical Property^c
is in domain of: measured activity^dp, measured affinity^dp

Known Sequence^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Known_Sequence

is defined by: http://purl.uniprot.org/core/

has super-classes: Sequence^c
has sub-classes: External Sequence^c, Modified Sequence^c, Simple Sequence^c

Lipid Binding^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Lipidation_Annotation

is defined by: http://purl.uniprot.org/core/

Covalent binding of a lipid moiety.

has super-classes: Modification^c

Mass^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Mass_Spectrometry_Annotation

is defined by: http://purl.uniprot.org/core/

Indicates the mass of a sequence determined by mass spectrometry.

has super-classes: Experimental Information^c; method^op only Mass Measurement^c; method^op max 1
is in domain of: measured error^dp, measured value^dp

Mass Measurement^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Mass_Measurement_Method

is defined by: http://purl.uniprot.org/core/

An experimental method for measuring the mass of a molecule.

has super-classes: Method^c

Member Of Redudant Proteome^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Member_Of_Redudant_Proteome

is defined by: http://purl.uniprot.org/core/

This entry was obsoleted because its sequence belongs to a redundant protoeome

has super-classes: Obsolete Protein^c

Metal Ion Binding Site^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Metal_Binding_Annotation

is defined by: http://purl.uniprot.org/core/

Binding site for a metal ion.

has super-classes: Site^c

Method^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Method

is defined by: http://purl.uniprot.org/core/

An experimental method.

has sub-classes: Mass Measurement^c, Structure Determination^c
is in range of: method^op

Modification^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Modification_Annotation

is defined by: http://purl.uniprot.org/core/

Describes amino acid modifications, post pre- and post-translational.

has super-classes: Sequence Annotation^c
has sub-classes: Crosslink^c, Disulfide Bond^c, Glycosylation Site^c, Lipid Binding^c, Modified Residue^c, Non standard residue^c

Modified Residue^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Modified_Residue_Annotation

is defined by: http://purl.uniprot.org/core/

Posttranslational modification of a residue.

has super-classes: Modification^c

Modified Sequence^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Modified_Sequence

is defined by: http://purl.uniprot.org/core/

has super-classes: Known Sequence^c; based on^op only Simple Sequence^c; modification^op only Splice Variant^c
is in domain of: based on^op, modification^op

Molecule^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Molecule

is defined by: http://purl.uniprot.org/core/

A biological molecule.

has sub-classes: DNA^c, RNA^c
is in range of: located on^op

Molecule Processing^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Molecule_Processing_Annotation

is defined by: http://purl.uniprot.org/core/

has super-classes: Sequence Annotation^c
has sub-classes: Chain^c, Initiator Methionine^c, Peptide^c, Propeptide^c, Signal Peptide^c, Transit Peptide^c

Motif^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Motif_Annotation

is defined by: http://purl.uniprot.org/core/

Short (<=20 amino acids) sequence motif of biological interest.

has super-classes: Region^c

mRNA^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/MRNA

is defined by: http://purl.uniprot.org/core/

has super-classes: RNA^c

Mutagenesis Site^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Mutagenesis_Annotation

is defined by: http://purl.uniprot.org/core/

Site which has been experimentally altered.

has super-classes: Experimental Information^c

Natural Variation^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Natural_Variation_Annotation

is defined by: http://purl.uniprot.org/core/

has super-classes: Sequence Annotation^c
has sub-classes: Sequence Variant^c, Splice Variant^c

Non self interaction^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Non_Self_Interaction

is defined by: http://purl.uniprot.org/core/

Description of a non self protein-protein interaction.

has super-classes: Interaction^c

Non standard residue^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Non-standard_Residue_Annotation

is defined by: http://purl.uniprot.org/core/

Describes the occurrence of a non standard residue in the sequence record.

has super-classes: Modification^c

Non-consecutive Residues^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Non-adjacent_Residues_Annotation

is defined by: http://purl.uniprot.org/core/

Indicates that two residues in a sequence are not consecutive and that there are a number of unsequenced residues between them.

has super-classes: Experimental Information^c

Non-terminal Residue^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Non-terminal_Residue_Annotation

is defined by: http://purl.uniprot.org/core/

The residue at an extremity of the sequence is not the terminal residue.

has super-classes: Experimental Information^c

Not Obsolete^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Not_Obsolete

is defined by: http://purl.uniprot.org/core/

A class introduced to group all records that are currently in the database.

is equivalent to: obsolete^dp value false
has sub-classes: Not obsolete protein (record)^c, Not obsolete taxon (record)^c
is disjoint with: Obsolete^c

Not obsolete protein (record)^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Not_Obsolete_Protein

is defined by: http://purl.uniprot.org/core/

has super-classes: Not Obsolete^c; Protein^c; organism^op exactly 1; existence^op some Protein existence evidence^c; sequence^op some Simple Sequence^c

Not obsolete taxon (record)^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Not_Obsolete_Taxon

is defined by: http://purl.uniprot.org/core/

has super-classes: Not Obsolete^c; Taxon^c; scientific name^op exactly 1

Nucleotide Mapping Statement^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Nucleotide_Mapping_Statement

is defined by: http://purl.uniprot.org/core/

The relationship between a protein and a nucleotide sequence.

has super-classes: statement^c

Nucleotide Phosphate Binding^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/NP_Binding_Annotation

is defined by: http://purl.uniprot.org/core/

Extent of a nucleotide phosphate-binding region.

has super-classes: Region^c

Nucleotide Resource^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Nucleotide_Resource

is defined by: http://purl.uniprot.org/core/

A resource that descripes a nucleotide sequence.

is equivalent to: located on^op min 1
has super-classes: Resource^c
is in domain of: located on^op, sequence discrepancy^op
is in range of: nucleotideSequenceMappingIssue^op, translated from^op

Observation Citation^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Observation_Citation

is defined by: http://purl.uniprot.org/core/

Citation of an unpublished result.

has super-classes: Unpublished Citation^c

Obsolete^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Obsolete

is defined by: http://purl.uniprot.org/core/

The class of all obsolete records in the database (i.e. records that where once published but are now removed).

is equivalent to: obsolete^dp value true
has sub-classes: Obsolete Protein^c, Obsolete Taxon^c
is disjoint with: Not Obsolete^c

Obsolete Protein^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Obsolete_Protein

is defined by: http://purl.uniprot.org/core/

has super-classes: Obsolete^c; Protein^c
has sub-classes: Member Of Redudant Proteome^c

Obsolete Taxon^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Obsolete_Taxon

is defined by: http://purl.uniprot.org/core/

Taxa are occasionally removed from the taxonomy database (particularly internal nodes, during a taxonomic revision) – these taxids are deleted, and are not reused.

has super-classes: Obsolete^c; Taxon^c

Organelle^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Organelle

is defined by: http://purl.uniprot.org/core/

Orientation^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Orientation

is defined by: http://purl.uniprot.org/core/

has super-classes: Subcellular Location^c
is in range of: orientation^op

Other DNA^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Other_DNA

is defined by: http://purl.uniprot.org/core/

has super-classes: DNA^c

Other RNA^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Other_RNA

is defined by: http://purl.uniprot.org/core/

has super-classes: RNA^c

Patent Citation^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Patent_Citation

is defined by: http://purl.uniprot.org/core/

A patent application.

has super-classes: Published Citation^c

Pathway^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Pathway

is defined by: http://purl.uniprot.org/core/

A hierarchical discription of a metabolic pathway.

Pathway annotation^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Pathway_Annotation

is defined by: http://purl.uniprot.org/core/

Description of the metabolic pathways with which a protein is associated.

has super-classes: Annotation^c

Peptide^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Peptide_Annotation

is defined by: http://purl.uniprot.org/core/

Extent of a released active peptide.

has super-classes: Molecule Processing^c

pH Dependence^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/PH_Dependence_Annotation

is defined by: http://purl.uniprot.org/core/

Describes the optimum pH for enzyme activity and/or the variation of enzyme activity with pH variation.

has super-classes: Biophysicochemical Property^c

Pharmaceutical^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Pharmaceutical_Annotation

is defined by: http://purl.uniprot.org/core/

Description of the use of a protein as a pharmaceutical drug.

has super-classes: Annotation^c

Plasmid^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Plasmid

is defined by: http://purl.uniprot.org/core/

Description of a Plasmid

Polymorphism^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Polymorphism_Annotation

is defined by: http://purl.uniprot.org/core/

Description of polymorphisms.

has super-classes: Annotation^c

Propeptide^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Propeptide_Annotation

is defined by: http://purl.uniprot.org/core/

Extent of a propeptide.

has super-classes: Molecule Processing^c

Protein^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Protein

is defined by: http://purl.uniprot.org/core/

Description of a protein.

has super-classes: thing^c; replaces^op only Protein^c; replaced by^op only Protein^c
has sub-classes: Not obsolete protein (record)^c, Obsolete Protein^c, Reviewed protein (records)^c
is in domain of: annotation^op, chainSequenceMapping^op, classified with^op, domain^op, encoded by^op, encoded in^op, existence^op, interaction^op, isolatedFrom^op, mapped citation^op, old mnemonic^op, potential sequence^op, proteome component^op
is disjoint with: Citation^c, Cluster (UniRef)^c, Sequence^c

Protein existence evidence^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Protein_Existence

is defined by: http://purl.uniprot.org/core/

is equivalent to: { Predicted , Evidence at transcript level , Uncertain , Inferred from homology , Evidence at protein level }

Protein part^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Part

is defined by: http://purl.uniprot.org/core/

Description of a part of a protein.

has super-classes: thing^c
is in range of: domain^op, part^op, proteome component^op

Proteome^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Proteome

is defined by: http://purl.uniprot.org/core/

Description of a proteome.

has sub-classes: Reference_Proteome^c, Representative_Proteome^c
is in domain of: panproteome^op, proteome exclusion reason^dp
is in range of: panproteome^op, redundantTo^op

Proteome_Component^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Proteome_Component

is defined by: http://purl.uniprot.org/core/

The component of a proteome. e.g. Chromosome, Contig or Plasmid

has super-classes: thing^c

PTM^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/PTM_Annotation

is defined by: http://purl.uniprot.org/core/

Description of a posttranslational modification.

has super-classes: Annotation^c

Published Citation^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Published_Citation

is defined by: http://purl.uniprot.org/core/

has super-classes: Citation^c
has sub-classes: Book Citation^c, Electronic Citation^c, Journal Citation^c, Patent Citation^c, Submission Citation^c, Thesis Citation^c
is in domain of: erratum^op, erratum for^op
is in range of: erratum^op, erratum for^op
is disjoint with: Unpublished Citation^c

Redox Potential^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Redox_Potential_Annotation

is defined by: http://purl.uniprot.org/core/

Reports the value of the standard (midpoint) oxido-reduction potential(s) for electron transport proteins.

has super-classes: Biophysicochemical Property^c

Reference_Proteome^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Reference_Proteome

is defined by: http://purl.uniprot.org/core/

Some proteomes have been (manually and algorithmically) selected as reference proteomes.

has super-classes: Proteome^c

Region^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Region_Annotation

is defined by: http://purl.uniprot.org/core/

has super-classes: Sequence Annotation^c
has sub-classes: Calcium Binding^c, Coiled-Coil^c, Compositionally Biased Region^c, DNA Binding^c, Domain Extent^c, INTRAMEM^c, Motif^c, Nucleotide Phosphate Binding^c, Repeat^c, Topological Domain^c, Transmembrane^c, Zinc Finger^c

Repeat^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Repeat_Annotation

is defined by: http://purl.uniprot.org/core/

Extent of an internal sequence repetition.

has super-classes: Region^c

Representative_Proteome^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Representative_Proteome

is defined by: http://purl.uniprot.org/core/

A proteome that is believed by curators, or selected programmatically to be representative for a number of related Proteomes

has super-classes: Proteome^c

Resource^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Resource

is defined by: http://purl.uniprot.org/core/

A life science resource.

is equivalent to: database^op some thing^c
has sub-classes: Nucleotide Resource^c, Structure Resource^c, Transcript Resource^c
is in domain of: database^op, signature sequence match^op

Reviewed^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Reviewed

is defined by: http://purl.uniprot.org/core/

The class of all reviewed records in the database (i.e. records that where looked at by a curator for integration into the database).

is equivalent to: reviewed^dp value true
has sub-classes: Reviewed protein (records)^c

Reviewed protein (records)^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Reviewed_Protein

is defined by: http://purl.uniprot.org/core/

has super-classes: Protein^c; Reviewed^c
is in domain of: nucleotideSequenceMappingIssue^op

Ribosomal Frameshifting^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Ribosomal_Frameshifting

is defined by: http://purl.uniprot.org/core/

has super-classes: Alternative Products^c

RNA^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/RNA

is defined by: http://purl.uniprot.org/core/

has super-classes: Molecule^c
has sub-classes: Genomic RNA^c, Other RNA^c, Transcribed RNA^c, Unassigned RNA^c, Viral cRNA^c, mRNA^c

RNA Editing^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/RNA_Editing_Annotation

is defined by: http://purl.uniprot.org/core/

Description of any type of RNA editing that leads to one or more amino acid changes.

has super-classes: Annotation^c
is in domain of: frameshift^dp

Secondary Structure^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Secondary_Structure_Annotation

is defined by: http://purl.uniprot.org/core/

Describes the secondary structure of proteins whose tertiary structure is known experimentally.

has super-classes: Sequence Annotation^c
has sub-classes: Helix^c, Strand^c, Turn^c

Self protein interaction^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Self_Interaction

is defined by: http://purl.uniprot.org/core/

Description of a self protein-protein interaction.

has super-classes: Interaction^c

Sequence^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Sequence

is defined by: http://purl.uniprot.org/core/

An amino acid sequence.

has sub-classes: Known Sequence^c, Unknown Sequence^c
is in domain of: MD5 checksum^dp, length^dp, member of^op, predicted mass^dp, seed for^op, sequence for^op
is in range of: member^op, potential sequence^op, sequence^op
is disjoint with: Citation^c, Cluster (UniRef)^c, Protein^c

Sequence Annotation^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Sequence_Annotation

is defined by: http://purl.uniprot.org/core/

Description of a special region or site in a protein sequence.

has super-classes: Annotation^c
has sub-classes: Experimental Information^c, Modification^c, Molecule Processing^c, Natural Variation^c, Region^c, Secondary Structure^c, Site^c

Sequence Caution^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Sequence_Caution_Annotation

is defined by: http://purl.uniprot.org/core/

Warning about possible errors related to the protein sequence

has super-classes: Annotation^c
has sub-classes: Erroneous Gene Model Prediction^c, Erroneous Initiation^c, Erroneous Termination^c, Erroneous Translation^c, Frameshift^c

Sequence Conflict^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Sequence_Conflict_Annotation

is defined by: http://purl.uniprot.org/core/

Different sources report differing sequences.

has super-classes: Experimental Information^c

Sequence Variant^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Natural_Variant_Annotation

is defined by: http://purl.uniprot.org/core/

Authors report that sequence variants exist.

has super-classes: Natural Variation^c

Signal Peptide^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Signal_Peptide_Annotation

is defined by: http://purl.uniprot.org/core/

Extent of a signal sequence (prepeptide).

has super-classes: Molecule Processing^c

Similarity^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Similarity_Annotation

is defined by: http://purl.uniprot.org/core/

Description of the similarities (sequence or structural) of a protein with other proteins.

has super-classes: Annotation^c

Simple Sequence^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Simple_Sequence

is defined by: http://purl.uniprot.org/core/

has super-classes: Known Sequence^c
is in domain of: fragment^dp, precursor^dp
is in range of: based on^op

Site^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Site_Annotation

is defined by: http://purl.uniprot.org/core/

Any interesting single amino-acid site on the sequence, that is not defined by another feature key. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids.

has super-classes: Sequence Annotation^c
has sub-classes: Active Site^c, Binding Site^c, Metal Ion Binding Site^c

Splice Variant^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Alternative_Sequence_Annotation

is defined by: http://purl.uniprot.org/core/

Description of sequence variants produced by alternative splicing.

has super-classes: Natural Variation^c
is in range of: modification^op

Status^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Status

is defined by: http://purl.uniprot.org/core/

Indicator for the reliability of a piece of information.

Strain^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Strain

is defined by: http://purl.uniprot.org/core/

A strain of a species.

is in range of: strain^op

Strand^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Beta_Strand_Annotation

is defined by: http://purl.uniprot.org/core/

Beta strand regions within the experimentally determined protein structure

has super-classes: Secondary Structure^c

Structure Determination^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Structure_Determination_Method

is defined by: http://purl.uniprot.org/core/

An experimental method for determining the 3D structure of a protein.

has super-classes: Method^c

Structure Mapping Statement^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Structure_Mapping_Statement

is defined by: http://purl.uniprot.org/core/

The relationship between a protein and a 3D structure.

has super-classes: statement^c
is in domain of: chain^dp

Structure Resource^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Structure_Resource

is defined by: http://purl.uniprot.org/core/

A resource that describes the 3D structure of a protein.

is equivalent to: (method^op only Structure Determination^c) and (method^op exactly 1)
has super-classes: Resource^c
is in domain of: resolution in Angstrom^dp

Structured_Name^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Structured_Name

is defined by: http://purl.uniprot.org/core/

A resource that holds a set of the known names for this protein together.

is in domain of: structured name type^dp
is in range of: alternativeName^op, recommended name^op, structured name^op, submitted name^op

Subcellular Location^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Subcellular_Location

is defined by: http://purl.uniprot.org/core/

has sub-classes: Cellular Component^c, Orientation^c, Topology^c
is in domain of: part of^op, related location^op
is in range of: encoded in^op, part of^op, related location^op

Subcellular Location Annotation^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Subcellular_Location_Annotation

is defined by: http://purl.uniprot.org/core/

Description of the subcellular location of the mature protein.

has super-classes: Annotation^c
is in domain of: located in^op

Submission Citation^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Submission_Citation

is defined by: http://purl.uniprot.org/core/

Data that was submitted directly to a database.

has super-classes: Published Citation^c; submitted to^dp exactly 1
is in domain of: submitted to^dp

Subunit^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Subunit_Annotation

is defined by: http://purl.uniprot.org/core/

Description of the quaternary structure of a protein.

has super-classes: Annotation^c

Taxon^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Taxon

is defined by: http://purl.uniprot.org/core/

An element of a taxonomy for classifying life forms.

has super-classes: replaces^op only Taxon^c; Mnemonic^op max 1
has sub-classes: Not obsolete taxon (record)^c, Obsolete Taxon^c
is in domain of: common name^op, complete^dp, host^op, other name^op, part of lineage^dp, rank^op, scientific name^op, strain^op, synonym^op
is in range of: common taxon^op, host^op, organism^op

Taxon rank^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Rank

is defined by: http://purl.uniprot.org/core/

A rank of a taxon.

is in range of: rank^op

Temperature Dependence^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Temperature_Dependence_Annotation

is defined by: http://purl.uniprot.org/core/

Indicates the optimum temperature for enzyme activity and/or the variation of enzyme activity with temperature variation; the thermostability/thermolability of the enzyme is also mentioned when it is known.

has super-classes: Biophysicochemical Property^c

Thesis Citation^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Thesis_Citation

is defined by: http://purl.uniprot.org/core/

A Ph.D. thesis.

has super-classes: Published Citation^c; institution^dp exactly 1
is in domain of: institution^dp

Tissue^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Tissue

is defined by: http://purl.uniprot.org/core/

A tissue such as lung or heart.

is in range of: isolatedFrom^op

Tissue Specificity^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Tissue_Specificity_Annotation

is defined by: http://purl.uniprot.org/core/

Description of the tissue specificity of a protein.

has super-classes: Annotation^c

Topological Domain^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Topological_Domain_Annotation

is defined by: http://purl.uniprot.org/core/

A topological domain.

has super-classes: Region^c

Topology^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Topology

is defined by: http://purl.uniprot.org/core/

has super-classes: Subcellular Location^c
is in range of: topology^op

Toxic Dose^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Toxic_Dose_Annotation

is defined by: http://purl.uniprot.org/core/

Information on the LD(50). LD stands for "Lethal Dose". LD(50) is the amount of a toxin, given all at once, which causes the death of 50% (one half) of a group of test animals.

has super-classes: Annotation^c

Transcribed RNA^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Transcribed_RNA

is defined by: http://purl.uniprot.org/core/

has super-classes: RNA^c

Transcript Resource^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Transcript_Resource

is defined by: http://purl.uniprot.org/core/

has super-classes: Resource^c
is in domain of: transcribed from^op, translated to^op

Transit Peptide^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Transit_Peptide_Annotation

is defined by: http://purl.uniprot.org/core/

Extent of a transit peptide (mitochondrion, chloroplast, thylakoid, cyanelle or microbody).

has super-classes: Molecule Processing^c

Transmembrane^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Transmembrane_Annotation

is defined by: http://purl.uniprot.org/core/

Extent of a transmembrane region.

has super-classes: Region^c

Transposon^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Transposon

is defined by: http://purl.uniprot.org/core/

A transposon

Turn^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Turn_Annotation

is defined by: http://purl.uniprot.org/core/

Turns within the experimentally determined protein structure.

has super-classes: Secondary Structure^c

Unassigned DNA^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Unassigned_DNA

is defined by: http://purl.uniprot.org/core/

has super-classes: DNA^c

Unassigned RNA^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Unassigned_RNA

is defined by: http://purl.uniprot.org/core/

has super-classes: RNA^c

Unknown Sequence^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Unknown_Sequence

is defined by: http://purl.uniprot.org/core/

has super-classes: Sequence^c

Unpublished Citation^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Unpublished_Citation

is defined by: http://purl.uniprot.org/core/

has super-classes: Citation^c
has sub-classes: Observation Citation^c
is disjoint with: Published Citation^c

Unsure Residue^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Sequence_Uncertainty_Annotation

is defined by: http://purl.uniprot.org/core/

Used to describe region(s) of a sequence for which the authors are unsure about the sequence assignment.

has super-classes: Experimental Information^c

Viral cRNA^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Viral_cRNA

is defined by: http://purl.uniprot.org/core/

Positive cRNA molecule that is made from from a single stranded genomic RNA.

has super-classes: RNA^c

Zinc Finger^c back to ToC or Class ToC

IRI: http://purl.uniprot.org/core/Zinc_Finger_Annotation

is defined by: http://purl.uniprot.org/core/

Extent of a zinc finger region.

has super-classes: Region^c

Object Properties

alternativeName
annotation
attribution
based on
catalytic activity
catalytic activity
catalyzed physiological reaction
catalyzed reaction
category
cellular component
chainSequenceMapping
citation
classified with
cofactor
common name
common taxon
conflicting sequence
context
database
disease
domain
encoded by
encoded in
enzyme
enzyme class
erratum
erratum for
existence
host
interaction
isolatedFrom
located in
located on
locus name
mapped annotation
mapped citation
member
member of
method
Mnemonic
modification
nucleotideSequenceMappingIssue
old mnemonic
organism
orientation
other name
panproteome
part
part of
participant
potential sequence
proteome component
published in
rank
recommended name
redundantTo
related location
replaced by
replaces
representative for
scientific name
seed for
sequence
sequence discrepancy
sequence for
signature sequence match
some members classified with
source
status
strain
structured name
submitted name
synonym
topology
transcribed from
translated from
translated to
withdrawnFromINSDC

alternativeName^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/alternativeName

is defined by: http://purl.uniprot.org/core/

A synonym of the recommended name.

has super-properties: structured name^op
has domain: Protein part^c or Protein^c
has range: Structured_Name^c

annotation^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/annotation

is defined by: http://purl.uniprot.org/core/

Attaches an annotation to a resource.

has domain: Protein^c
has range: Annotation^c

attribution^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/attribution

is defined by: http://purl.uniprot.org/core/

has domain: Protein^c or statement^c
has range: Attribution^c

based on^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/basedOn

is defined by: http://purl.uniprot.org/core/

The sequence on which the description of a modified sequence is based.

has characteristics: functional

has domain: Modified Sequence^c
has range: Simple Sequence^c

catalytic activity^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/activity

is defined by: http://purl.uniprot.org/core/

The catalytic activity of an enzyme.

has domain: Enzyme^c
has range: Catalytic Activity^c

catalytic activity^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/catalyticActivity

is defined by: http://purl.uniprot.org/core/

has domain: Catalytic Activity Annotation^c
has range: Catalytic Activity^c

catalyzed physiological reaction^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/catalyzedPhysiologicalReaction

is defined by: http://purl.uniprot.org/core/

has domain: Catalytic Activity Annotation^c

catalyzed reaction^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/catalyzedReaction

is defined by: http://purl.uniprot.org/core/

has characteristics: functional

has domain: Catalytic Activity^c

category^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/category

is defined by: http://purl.uniprot.org/core/

has domain: Database (description of)^c

cellular component^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/cellularComponent

is defined by: http://purl.uniprot.org/core/

has domain: (cellular component^op exactly 1 Cellular Component^c) and (orientation^op max 1 Orientation^c) and (topology^op max 1 Topology^c)
has range: Cellular Component^c

chainSequenceMapping^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/chainSequenceMapping

is defined by: http://purl.uniprot.org/core/

A mapping between a Sequence/Entry and aminoacids described in a PDB record.

has domain: Protein^c

citation^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/citation

is defined by: http://purl.uniprot.org/core/

A publication from which data was extracted, or which contains additional information.

has domain: Cellular Component^c or Database (description of)^c or External Sequence^c or Nucleotide Resource^c or Orientation^c or Protein^c or Topology^c
has range: Citation^c

classified with^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/classifiedWith

is defined by: http://purl.uniprot.org/core/

A concept that classifies this resource.

has domain: Protein^c
has range: Concept^c

cofactor^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/cofactor

is defined by: http://purl.uniprot.org/core/

has domain: Cofactor^c

common name^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/commonName

is defined by: http://purl.uniprot.org/core/

has characteristics: functional

has super-properties: name^dp
has domain: Taxon^c

common taxon^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/commonTaxon

is defined by: http://purl.uniprot.org/core/

has characteristics: functional

has domain: Cluster (UniRef)^c
has range: Taxon^c

conflicting sequence^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/conflictingSequence

is defined by: http://purl.uniprot.org/core/

has domain: Protein^c or Sequence Caution^c or Sequence Conflict^c
has range: External Sequence^c

context^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/context

is defined by: http://purl.uniprot.org/core/

has domain: Citation Statement^c

database^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/database

is defined by: http://purl.uniprot.org/core/

has characteristics: functional

has domain: Resource^c
has range: Database (description of)^c

disease^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/disease

is defined by: http://purl.uniprot.org/core/

has domain: Disease Annotation^c
has range: Disease^c

domain^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/domain

is defined by: http://purl.uniprot.org/core/

A domain of a protein.

has super-properties: part^op
has domain: Protein^c
has range: Protein part^c

encoded by^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/encodedBy

is defined by: http://purl.uniprot.org/core/

The gene by which a protein is encoded.

has domain: Protein^c
has range: Gene^c

encoded in^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/encodedIn

is defined by: http://purl.uniprot.org/core/

The subcellular location where a protein is encoded.

has domain: Protein^c
has range: Subcellular Location^c

enzyme^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/enzyme

is defined by: http://purl.uniprot.org/core/

The catalytic activity associated with a protein. or part of a protein.

has domain: Protein part^c or Protein^c
has range: Enzyme^c

enzyme class^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/enzymeClass

is defined by: http://purl.uniprot.org/core/

has domain: Catalytic Activity^c
has range: Enzyme^c

erratum^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/erratum

is defined by: http://purl.uniprot.org/core/

An erratum for a publication.

has domain: Published Citation^c
has range: Published Citation^c
is inverse of: erratum for^op

erratum for^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/erratumFor

is defined by: http://purl.uniprot.org/core/

The publication which an erratum refers to.

has domain: Published Citation^c
has range: Published Citation^c
is inverse of: erratum^op

existence^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/existence

is defined by: http://purl.uniprot.org/core/

has domain: Protein^c

host^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/host

is defined by: http://purl.uniprot.org/core/

has domain: Taxon^c
has range: Taxon^c

interaction^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/interaction

is defined by: http://purl.uniprot.org/core/

has domain: Protein^c
has range: Interaction^c

isolatedFrom^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/isolatedFrom

is defined by: http://purl.uniprot.org/core/

has domain: Protein^c
has range: Tissue^c

located in^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/locatedIn

is defined by: http://purl.uniprot.org/core/

has domain: Subcellular Location Annotation^c
has range: (cellular component^op exactly 1 Cellular Component^c) and (orientation^op max 1 Orientation^c) and (topology^op max 1 Topology^c)

located on^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/locatedOn

is defined by: http://purl.uniprot.org/core/

The molecule a this resource is located on.

has domain: Nucleotide Resource^c
has range: Molecule^c

locus name^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/locusName

is defined by: http://purl.uniprot.org/core/

has super-properties: name^dp
has domain: Gene^c

mapped annotation^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/mappedAnnotation

is defined by: http://purl.uniprot.org/core/

Maps annotation to a resource. Used to link annotations/comments from external non UniProt sources via Citations to UniProt resources.

has domain: Citation Statement^c or Protein^c
has range: Annotation^c

mapped citation^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/mappedCitation

is defined by: http://purl.uniprot.org/core/

A publication from which data was by a extracted by a mapping from non UniProt origin, or which contains additional information.

has domain: Protein^c
has range: Citation^c

member^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/member

is defined by: http://purl.uniprot.org/core/

One of several similar resources.

has domain: Cluster (UniRef)^c
has range: Sequence^c
is inverse of: member of^op

member of^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/memberOf

is defined by: http://purl.uniprot.org/core/

has domain: Sequence^c
has range: Cluster (UniRef)^c
is inverse of: member^op

method^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/method

is defined by: http://purl.uniprot.org/core/

The experimental method that was used.

has domain: Mass^c or Structure Resource^c
has range: Method^c

Mnemonic^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/mnemonic

is defined by: http://purl.uniprot.org/core/

A rememberable string that can be used to find entries, not a stable identifier!

has super-properties: name^dp
has domain: Cluster (UniRef)^c or Protein^c or Sequence^c
is also defined as: data property

modification^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/modification

is defined by: http://purl.uniprot.org/core/

A modification of a sequence.

has domain: Modified Sequence^c
has range: Splice Variant^c

nucleotideSequenceMappingIssue^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/nucleotideSequenceMappingIssue

is defined by: http://purl.uniprot.org/core/

When a CDS differs substantially from a reviewed UniProtKB/Swiss-Prot sequence, the UniProt curators indicate the nature of the difference in the corresponding cross-reference.

has domain: Reviewed protein (records)^c
has range: Nucleotide Resource^c

old mnemonic^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/oldMnemonic

is defined by: http://purl.uniprot.org/core/

A mnemonic that is no longer in use for this entry.

has super-properties: name^dp
has domain: Protein^c
is also defined as: data property

organism^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/organism

is defined by: http://purl.uniprot.org/core/

The organism in which a protein occurs.

has domain: Protein^c or Sequence^c
has range: Taxon^c

orientation^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/orientation

is defined by: http://purl.uniprot.org/core/

has domain: (cellular component^op exactly 1 Cellular Component^c) and (orientation^op max 1 Orientation^c) and (topology^op max 1 Topology^c)
has range: Orientation^c

other name^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/otherName

is defined by: http://purl.uniprot.org/core/

has super-properties: name^dp
has domain: Taxon^c
is also defined as: data property

panproteome^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/panproteome

is defined by: http://purl.uniprot.org/core/

The current pan proteome sequences are derived from the reference proteome clusters (75% proteome similarity for Fungus and 55% proteome similarity for Archaea and Bacteria). A reference proteome cluster is also known as a representative proteome group (RPG) (Chen et al., 2011). A RPG contains similar proteomes calculated based on their co-membership in UniRef50 clusters. For each non-singleton reference proteome cluster, a pan proteome is a set of sequences consisting of all the sequences in the reference proteome, plus the addition of unique protein sequences that are found in other species or strains of the cluster but not in the reference proteome. These additional sequences are identified using UniRef50 membership.

has domain: Proteome^c
has range: Proteome^c

part^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/part

is defined by: http://purl.uniprot.org/core/

has sub-properties: domain^op, proteome component^op
has range: Protein part^c

part of^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/partOf

is defined by: http://purl.uniprot.org/core/

has domain: Subcellular Location^c
has range: Subcellular Location^c

participant^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/participant

is defined by: http://purl.uniprot.org/core/

A protein that participates in a protein-protein interaction.

has domain: Interaction^c
has range: Interaction participant^c

potential sequence^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/potentialSequence

is defined by: http://purl.uniprot.org/core/

This is a predicate added by an automated procedure to link entries/proteins that might be isoforms of each other.

has domain: Protein^c
has range: Sequence^c

proteome component^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/component

is defined by: http://purl.uniprot.org/core/

A component of a protein.

has super-properties: part^op
has domain: Protein^c
has range: Protein part^c

published in^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/publishedIn

is defined by: http://purl.uniprot.org/core/

Reserved predicate to link a citation to the Journal that it appeared in.

has domain: Citation^c
has range: Journal^c

rank^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/rank

is defined by: http://purl.uniprot.org/core/

The rank of a taxon.

has characteristics: functional

has domain: Taxon^c
has range: Taxon rank^c

recommended name^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/recommendedName

is defined by: http://purl.uniprot.org/core/

The name recommended by the UniProt consortium.

has super-properties: structured name^op
has domain: Protein part^c or Protein^c
has range: Structured_Name^c

redundantTo^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/redundantTo

is defined by: http://purl.uniprot.org/core/

Indicates which proteome this proteome is redundant to.

has domain: resource^c
has range: Proteome^c

related location^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/relatedLocation

is defined by: http://purl.uniprot.org/core/

has domain: Subcellular Location^c
has range: Subcellular Location^c

replaced by^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/replacedBy

is defined by: http://purl.uniprot.org/core/

A resource that replaces this resource.

has domain: Enzyme^c or Protein^c or Taxon^c
has range: Enzyme^c or Protein^c or Taxon^c
is inverse of: replaces^op

replaces^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/replaces

is defined by: http://purl.uniprot.org/core/

A resource that is replaced by this resource.

has domain: Enzyme^c or Protein^c or Proteome^c or Taxon^c
has range: Obsolete^c and (Enzyme^c or Protein^c or Proteome^c or Taxon^c)
is inverse of: replaced by^op

representative for^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/representativeFor

is defined by: http://purl.uniprot.org/core/

has characteristics: functional, inverse functional

has domain: Protein^c or Sequence^c
has range: Cluster (UniRef)^c

scientific name^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/scientificName

is defined by: http://purl.uniprot.org/core/

has characteristics: functional

has super-properties: name^dp
has domain: Taxon^c
is also defined as: data property

seed for^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/seedFor

is defined by: http://purl.uniprot.org/core/

has domain: Sequence^c
has range: Cluster (UniRef)^c

sequence^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/sequence

is defined by: http://purl.uniprot.org/core/

An amino acid sequence.

has domain: Annotation^c or Protein^c or Resource^c
has range: Sequence^c
is inverse of: sequence for^op

sequence discrepancy^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/sequenceDiscrepancy

is defined by: http://purl.uniprot.org/core/

Used when a CoDing Sequences (CDS) from the INSDC differs substantially from a reviewed UniProtKB/Swiss-Prot sequence, the UniProt curators indicate the nature of the difference as a rdfs:comment linked via this predicate.

has domain: Nucleotide Resource^c

sequence for^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/sequenceFor

is defined by: http://purl.uniprot.org/core/

A resource that describes this sequence.

has domain: Sequence^c
has range: Annotation^c or Protein^c or Resource^c
is inverse of: sequence^op

signature sequence match^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/signatureSequenceMatch

is defined by: http://purl.uniprot.org/core/

Indicates that the signature described by the subject resource matches mathematically and that that match is described by the object of a triple using this property as predicate.

has domain: Resource^c

some members classified with^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/someMembersClassifiedWith

is defined by: http://purl.uniprot.org/core/

Indicates which GO terms are somewhat consistently used to annotate UniProtKB members of this cluster.

has domain: Cluster (UniRef)^c
has range: g o 0003674^c or g o 0005575^c or g o 0008150^c

source^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/source

is defined by: http://purl.uniprot.org/core/

has domain: Attribution^c

status^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/status

strain^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/strain

is defined by: http://purl.uniprot.org/core/

has domain: Taxon^c
has range: Strain^c

structured name^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/structuredName

is defined by: http://purl.uniprot.org/core/

has sub-properties: alternativeName^op, recommended name^op, submitted name^op
has domain: Protein part^c or Protein^c
has range: Structured_Name^c

submitted name^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/submittedName

is defined by: http://purl.uniprot.org/core/

A name provided by the submitter of the underlying nucleotide sequence.

has super-properties: structured name^op
has domain: Protein part^c or Protein^c
has range: Structured_Name^c

synonym^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/synonym

is defined by: http://purl.uniprot.org/core/

has characteristics: functional

has super-properties: name^dp
has domain: Taxon^c
is also defined as: data property

topology^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/topology

is defined by: http://purl.uniprot.org/core/

has domain: (cellular component^op exactly 1 Cellular Component^c) and (orientation^op max 1 Orientation^c) and (topology^op max 1 Topology^c)
has range: Topology^c

transcribed from^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/transcribedFrom

is defined by: http://purl.uniprot.org/core/

has domain: Transcript Resource^c

translated from^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/translatedFrom

is defined by: http://purl.uniprot.org/core/

has domain: External Sequence^c
has range: Nucleotide Resource^c

translated to^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/translatedTo

is defined by: http://purl.uniprot.org/core/

has domain: Transcript Resource^c

withdrawnFromINSDC^op back to ToC or Object Property ToC

IRI: http://purl.uniprot.org/core/withdrawnFromINSDC

is defined by: http://purl.uniprot.org/core/

Data Properties

abstract
alias
allergen name
atypical
author
authorsIncomplete
begin
biotechName
CD molecule antigen name
certain
chain
checksum
cofactorLabel
complete
crc64 checksum
created
curated
date
domains
EC as a name
editor
end
experiments
fragment
frameshift
fullName
fused
group
height
hits
identity
implicit
institution
international non proprietary name
length
limit
link is explicit
locator
manual
maximum
MD5 checksum
measured activity
measured affinity
measured error
measured value
Mnemonic
modified date
name
negative
obsolete
old mnemonic
ORF name
other name
pages
part of lineage
partial
place of publication
position
precursor
predicted mass
proteome exclusion reason
publisher
range
reference proteome
representative proteome
resolution in Angstrom
reviewed
scientific name
scope
short name
shortCoden
structured name type
submitted to
substitution
synonym
title
URI template
URL pattern
URL template
version
volume
width
xeno

abstract^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/abstract

is defined by: http://purl.uniprot.org/core/

True if the class does not have any direct instances.

has characteristics: functional

has domain: Database (description of)^c
has range: boolean

alias^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/alias

is defined by: http://purl.uniprot.org/core/

An alternative name used in the flat text format.

has range: string

allergen name^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/allergenName

is defined by: http://purl.uniprot.org/core/

See http://www.expasy.org/cgi-bin/lists?allergen.txt

has super-properties: structured name type^dp

atypical^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/atypical

is defined by: http://purl.uniprot.org/core/

author^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/author

is defined by: http://purl.uniprot.org/core/

The author of a publication.

has sub-properties: group^dp
has domain: Citation^c
has range: string

authorsIncomplete^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/authorsIncomplete

is defined by: http://purl.uniprot.org/core/

has domain: Citation^c
has range: boolean

begin^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/begin

biotechName^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/biotechName

is defined by: http://purl.uniprot.org/core/

A name used in a biotechnological context.

has super-properties: structured name type^dp

CD molecule antigen name^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/cdAntigenName

is defined by: http://purl.uniprot.org/core/

A name from the Human Cell Differentiation Molecules (HCDM) nomenclature.

has super-properties: structured name type^dp

certain^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/certain

is defined by: http://purl.uniprot.org/core/

False if there is any uncertainty about a statement.

has characteristics: functional

has domain: Absorption^c
has range: boolean

chain^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/chain

is defined by: http://purl.uniprot.org/core/

Maps a series of symbols representing chains of a protein to a range of amino acids.

has domain: Structure Mapping Statement^c
has range: string

checksum^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/checksum

is defined by: http://purl.uniprot.org/core/

An caclulated value that is used to detect if there are errors in the sequence as shown due to among others IO errors. Both the crc64 and md5sum have collisions in UniProt data and cannot be used as unique keys.

has sub-properties: MD5 checksum^dp

cofactorLabel^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/cofactorLabel

is defined by: http://purl.uniprot.org/core/

A cofactor required for a catalytic activity.

has domain: Enzyme^c
has range: string

complete^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/complete

is defined by: http://purl.uniprot.org/core/

has domain: Taxon^c
has range: boolean

crc64 checksum^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/crc64Checksum

is defined by: http://purl.uniprot.org/core/

created^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/created

is defined by: http://purl.uniprot.org/core/

The date a resource was created.

has characteristics: functional

has domain: Protein^c or Resource^c or Sequence^c
has range: date

curated^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/curated

is defined by: http://purl.uniprot.org/core/

If true the described database has some level of curation.

has domain: Database (description of)^c
has range: boolean

date^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/date

is defined by: http://purl.uniprot.org/core/

has characteristics: functional

has domain: Attribution^c or Citation^c

domains^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/domains

EC as a name^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/ecName

is defined by: http://purl.uniprot.org/core/

The ecName is the enzyme classification associated with a structured name of the protein. Proteins are often named after their enzymatic activity but can have more than one activity leading to multiple names.

has super-properties: structured name type^dp

editor^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/editor

is defined by: http://purl.uniprot.org/core/

The editor of a publication.

has domain: Book Citation^c
has range: string

end^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/end

experiments^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/experiments

is defined by: http://purl.uniprot.org/core/

has characteristics: functional

has domain: Interaction^c
has range: int

fragment^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/fragment

is defined by: http://purl.uniprot.org/core/

Indicates if a sequence is complete or consists of one or more fragments.

has domain: Simple Sequence^c
has range: { "multiple" , "single" }

frameshift^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/frameshift

is defined by: http://purl.uniprot.org/core/

True if a sequence modification causes a frameshift.

has domain: RNA Editing^c
has range: boolean

fullName^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/fullName

is defined by: http://purl.uniprot.org/core/

The full name.

has super-properties: structured name type^dp

fused^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/fused

group^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/group

is defined by: http://purl.uniprot.org/core/

The group or consortium that authored a publication.

has super-properties: author^dp
has domain: Citation^c
has range: string

height^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/height

is defined by: http://purl.uniprot.org/core/

has characteristics: functional

has domain: image^c
has range: int

hits^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/hits

identity^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/identity

is defined by: http://purl.uniprot.org/core/

The level of sequence identity in a cluster.

has characteristics: functional

has domain: Cluster (UniRef)^c
has range: { "0.5" , "0.9" , "1.0" }

implicit^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/implicit

is defined by: http://purl.uniprot.org/core/

True if existance of this resource can be inferred.

has characteristics: functional

has domain: Database (description of)^c
has range: boolean

institution^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/institution

is defined by: http://purl.uniprot.org/core/

The institution at which a thesis was written.

has domain: Thesis Citation^c
has range: string

international non proprietary name^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/internationalNonproprietaryName

is defined by: http://purl.uniprot.org/core/

The international nonproprietary name: A generic name for a pharmaceutical substance or active pharmaceutical ingredient that is globally recognized and is a public property.

has super-properties: structured name type^dp

length^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/length

is defined by: http://purl.uniprot.org/core/

has characteristics: functional

has domain: Sequence^c
has range: int

limit^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/limit

link is explicit^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/linkIsExplicit

is defined by: http://purl.uniprot.org/core/

True if the Database is linked by an explicit action to UniProt, false if it is done using a simple hardcoded rule.

has domain: Database (description of)^c
has range: boolean

locator^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/locator

is defined by: http://purl.uniprot.org/core/

has domain: Citation^c
has range: string

manual^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/manual

is defined by: http://purl.uniprot.org/core/

has characteristics: functional

has domain: Attribution^c
has range: boolean

maximum^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/maximum

is defined by: http://purl.uniprot.org/core/

A maximum value.

has characteristics: functional

has domain: Absorption^c
has range: float

MD5 checksum^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/md5Checksum

is defined by: http://purl.uniprot.org/core/

has characteristics: functional

has super-properties: checksum^dp
has domain: Sequence^c
has range: string

measured activity^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/measuredActivity

is defined by: http://purl.uniprot.org/core/

The maximum velocity, Vmax.

has domain: Kinetics^c
has range: string

measured affinity^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/measuredAffinity

is defined by: http://purl.uniprot.org/core/

The Michaelis-Menten constant, Km.

has domain: Kinetics^c
has range: string

measured error^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/measuredError

is defined by: http://purl.uniprot.org/core/

The magnitude of the error of a value that was measured.

has characteristics: functional

has domain: Mass^c
has range: float

measured value^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/measuredValue

is defined by: http://purl.uniprot.org/core/

A value that was measured.

has characteristics: functional

has domain: Mass^c
has range: float

Mnemonic^op back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/mnemonic

is defined by: http://purl.uniprot.org/core/

A rememberable string that can be used to find entries, not a stable identifier!

has range: string
is also defined as: object property

modified date^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/modified

is defined by: http://purl.uniprot.org/core/

The date a resource was last modified.

has characteristics: functional

has domain: Cluster (UniRef)^c or Protein^c or Sequence^c
has range: date

name^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/name

is defined by: http://purl.uniprot.org/core/

has sub-properties: Mnemonic^op, common name^op, locus name^op, old mnemonic^op, other name^op, scientific name^op, synonym^op
has range: string

negative^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/negative

is defined by: http://purl.uniprot.org/core/

has characteristics: functional

has domain: Interaction^c
has range: boolean

obsolete^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/obsolete

is defined by: http://purl.uniprot.org/core/

True if this resource has been replaced or deleted.

has characteristics: functional

has domain: Protein^c or Taxon^c
has range: boolean

old mnemonic^op back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/oldMnemonic

is defined by: http://purl.uniprot.org/core/

A mnemonic that is no longer in use for this entry.

has range: string
is also defined as: object property

ORF name^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/orfName

is defined by: http://purl.uniprot.org/core/

has domain: Gene^c
has range: string

other name^op back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/otherName

is defined by: http://purl.uniprot.org/core/

has range: string
is also defined as: object property

pages^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/pages

is defined by: http://purl.uniprot.org/core/

The first and last page for a chapter or article.

has characteristics: functional

has domain: Book Citation^c or Journal Citation^c
has range: string

part of lineage^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/partOfLineage

is defined by: http://purl.uniprot.org/core/

True for taxa that can appear as part of an organism's non abbreviated lineage. In the flatfile and XML views of an UniProt entry (as well as at INSDC) only these taxonomic nodes are shown.

has characteristics: functional

has domain: Taxon^c
has range: boolean

partial^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/partial

place of publication^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/place

is defined by: http://purl.uniprot.org/core/

The place where a publication was published. This usually includes a country name.

has characteristics: functional

has domain: Book Citation^c or Thesis Citation^c
has range: string

position^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/position

precursor^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/precursor

is defined by: http://purl.uniprot.org/core/

has domain: Simple Sequence^c
has range: boolean

predicted mass^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/mass

is defined by: http://purl.uniprot.org/core/

The predicted mass of a sequence in Daltons.

has characteristics: functional

has domain: Sequence^c
has range: int

proteome exclusion reason^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/exclusionReason

is defined by: http://purl.uniprot.org/core/

Indicates why the proteins of an Proteome where excluded from UniProtKB.

has domain: Proteome^c
has range: string

publisher^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/publisher

is defined by: http://purl.uniprot.org/core/

The publisher of a book.

has domain: Book Citation^c
has range: string

range^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/range

reference proteome^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/referenceProteome

is defined by: http://purl.uniprot.org/core/

representative proteome^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/representativeProteome

is defined by: http://purl.uniprot.org/core/

resolution in Angstrom^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/resolution

is defined by: http://purl.uniprot.org/core/

The resolution of an experiment, in Angstrom.

has characteristics: functional

has domain: Structure Resource^c
has range: float

reviewed^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/reviewed

is defined by: http://purl.uniprot.org/core/

Indicates whether a resource has been reviewed by a curator.

has characteristics: functional

has domain: Protein^c or Taxon^c
has range: boolean

scientific name^op back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/scientificName

is defined by: http://purl.uniprot.org/core/

has characteristics: functional

has range: string
is also defined as: object property

scope^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/scope

is defined by: http://purl.uniprot.org/core/

The extent of the work carried out by the authors of a publication.

has domain: Citation Statement^c
has range: string

short name^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/shortName

is defined by: http://purl.uniprot.org/core/

An abbreviation of the full name or an acronym.

has super-properties: structured name type^dp

shortCoden^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/shortCoden

is defined by: http://purl.uniprot.org/core/

Used to link a Journal to its shortCoden

has domain: Journal^c
has range: string

structured name type^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/structuredNameType

is defined by: http://purl.uniprot.org/core/

All names of the protein, from commonly used to obsolete, to used in the literature..

has sub-properties: CD molecule antigen name^dp, EC as a name^dp, allergen name^dp, biotechName^dp, fullName^dp, international non proprietary name^dp, short name^dp
has domain: Structured_Name^c
has range: string

submitted to^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/submittedTo

is defined by: http://purl.uniprot.org/core/

The database a resource was submitted to.

has domain: Submission Citation^c

substitution^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/substitution

is defined by: http://purl.uniprot.org/core/

A replacement sequence.

has domain: Mutagenesis Site^c or Sequence Variant^c or Sequence Conflict^c
has range: string

synonym^op back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/synonym

is defined by: http://purl.uniprot.org/core/

has characteristics: functional

has range: string
is also defined as: object property

title^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/title

is defined by: http://purl.uniprot.org/core/

The title of a publication.

has characteristics: functional

has domain: Citation^c
has range: string

URI template^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/uriTemplate

is defined by: http://purl.uniprot.org/core/

An string template that can be used to figure out from the database id what uri desribes it.

has domain: Database (description of)^c
has range: string

URL pattern^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/pattern

is defined by: http://purl.uniprot.org/core/

A URL pattern, used to generate links by substituting an identifier.

has characteristics: functional

has domain: Database (description of)^c
has range: string

URL template^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/urlTemplate

is defined by: http://purl.uniprot.org/core/

An string template that can be used to figure out from the database id what html page talks about it.

has domain: Database (description of)^c
has range: string

version^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/version

is defined by: http://purl.uniprot.org/core/

has characteristics: functional

has domain: Protein^c or Sequence^c
has range: int

volume^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/volume

is defined by: http://purl.uniprot.org/core/

The volume a publication is part of.

has characteristics: functional

has domain: Book Citation^c or Journal Citation^c

width^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/width

is defined by: http://purl.uniprot.org/core/

has characteristics: functional

has domain: image^c
has range: int

xeno^dp back to ToC or Data Property ToC

IRI: http://purl.uniprot.org/core/xeno

is defined by: http://purl.uniprot.org/core/

has characteristics: functional

has domain: Interaction^c
has range: boolean

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni.

UniProt RDF schema ontology

Abstract

Table of Content

Classes

Absorptionc back to ToC or Class ToC

Active Sitec back to ToC or Class ToC

Activity Regulationc back to ToC or Class ToC

Allergenc back to ToC or Class ToC

Alternative Initiationc back to ToC or Class ToC

Alternative Productsc back to ToC or Class ToC

Alternative Promoter Usagec back to ToC or Class ToC

Alternative Splicingc back to ToC or Class ToC

Annotationc back to ToC or Class ToC

Attributionc back to ToC or Class ToC

Binding Sitec back to ToC or Class ToC

Biophysicochemical Propertyc back to ToC or Class ToC

Biotechnologyc back to ToC or Class ToC

Book Citationc back to ToC or Class ToC

Calcium Bindingc back to ToC or Class ToC

Catalytic Activityc back to ToC or Class ToC

Catalytic Activity Annotationc back to ToC or Class ToC

Cautionc back to ToC or Class ToC

Cellular Componentc back to ToC or Class ToC

Chainc back to ToC or Class ToC

Citationc back to ToC or Class ToC

Citation Statementc back to ToC or Class ToC

Cluster (UniRef)c back to ToC or Class ToC

Cofactorc back to ToC or Class ToC

Coiled-Coilc back to ToC or Class ToC

Compositionally Biased Regionc back to ToC or Class ToC

Conceptc back to ToC or Class ToC

Crosslinkc back to ToC or Class ToC

Database (description of)c back to ToC or Class ToC

Developmental Stagec back to ToC or Class ToC

Diseasec back to ToC or Class ToC

Disease Annotationc back to ToC or Class ToC

Disruption Phenotypec back to ToC or Class ToC

Disulfide Bondc back to ToC or Class ToC

DNAc back to ToC or Class ToC

DNA Bindingc back to ToC or Class ToC

Domainc back to ToC or Class ToC

Domain Assignment Statementc back to ToC or Class ToC

Domain Extentc back to ToC or Class ToC

Electronic Citationc back to ToC or Class ToC

Endpoint Statementc back to ToC or Class ToC

Enzymec back to ToC or Class ToC

Enzyme Regulationc back to ToC or Class ToC

Erroneous Gene Model Predictionc back to ToC or Class ToC

Erroneous Initiationc back to ToC or Class ToC

Erroneous Terminationc back to ToC or Class ToC

Erroneous Translationc back to ToC or Class ToC

Experimental Informationc back to ToC or Class ToC

External Sequencec back to ToC or Class ToC

Family Membership Statementc back to ToC or Class ToC

Frameshiftc back to ToC or Class ToC

Functionc back to ToC or Class ToC

Genec back to ToC or Class ToC

Genomic DNAc back to ToC or Class ToC

Genomic RNAc back to ToC or Class ToC

Glycosylation Sitec back to ToC or Class ToC

Helixc back to ToC or Class ToC

Inductionc back to ToC or Class ToC

Initiator Methioninec back to ToC or Class ToC

Interactionc back to ToC or Class ToC

Interaction participantc back to ToC or Class ToC

INTRAMEMc back to ToC or Class ToC

Journalc back to ToC or Class ToC

Journal Citationc back to ToC or Class ToC

Kineticsc back to ToC or Class ToC

Known Sequencec back to ToC or Class ToC

Lipid Bindingc back to ToC or Class ToC

Massc back to ToC or Class ToC

Mass Measurementc back to ToC or Class ToC

Member Of Redudant Proteomec back to ToC or Class ToC

Metal Ion Binding Sitec back to ToC or Class ToC

Methodc back to ToC or Class ToC

Modificationc back to ToC or Class ToC

Modified Residuec back to ToC or Class ToC

Modified Sequencec back to ToC or Class ToC

Moleculec back to ToC or Class ToC

Absorption^c back to ToC or Class ToC

Active Site^c back to ToC or Class ToC

Activity Regulation^c back to ToC or Class ToC

Allergen^c back to ToC or Class ToC

Alternative Initiation^c back to ToC or Class ToC

Alternative Products^c back to ToC or Class ToC

Alternative Promoter Usage^c back to ToC or Class ToC

Alternative Splicing^c back to ToC or Class ToC

Annotation^c back to ToC or Class ToC

Attribution^c back to ToC or Class ToC

Binding Site^c back to ToC or Class ToC

Biophysicochemical Property^c back to ToC or Class ToC

Biotechnology^c back to ToC or Class ToC

Book Citation^c back to ToC or Class ToC

Calcium Binding^c back to ToC or Class ToC

Catalytic Activity^c back to ToC or Class ToC

Catalytic Activity Annotation^c back to ToC or Class ToC

Caution^c back to ToC or Class ToC

Cellular Component^c back to ToC or Class ToC

Chain^c back to ToC or Class ToC

Citation^c back to ToC or Class ToC

Citation Statement^c back to ToC or Class ToC

Cluster (UniRef)^c back to ToC or Class ToC

Cofactor^c back to ToC or Class ToC

Coiled-Coil^c back to ToC or Class ToC

Compositionally Biased Region^c back to ToC or Class ToC

Concept^c back to ToC or Class ToC

Crosslink^c back to ToC or Class ToC

Database (description of)^c back to ToC or Class ToC

Developmental Stage^c back to ToC or Class ToC

Disease^c back to ToC or Class ToC

Disease Annotation^c back to ToC or Class ToC

Disruption Phenotype^c back to ToC or Class ToC

Disulfide Bond^c back to ToC or Class ToC

DNA^c back to ToC or Class ToC

DNA Binding^c back to ToC or Class ToC

Domain^c back to ToC or Class ToC

Domain Assignment Statement^c back to ToC or Class ToC

Domain Extent^c back to ToC or Class ToC

Electronic Citation^c back to ToC or Class ToC

Endpoint Statement^c back to ToC or Class ToC

Enzyme^c back to ToC or Class ToC

Enzyme Regulation^c back to ToC or Class ToC

Erroneous Gene Model Prediction^c back to ToC or Class ToC

Erroneous Initiation^c back to ToC or Class ToC

Erroneous Termination^c back to ToC or Class ToC

Erroneous Translation^c back to ToC or Class ToC

Experimental Information^c back to ToC or Class ToC

External Sequence^c back to ToC or Class ToC

Family Membership Statement^c back to ToC or Class ToC

Frameshift^c back to ToC or Class ToC

Function^c back to ToC or Class ToC

Gene^c back to ToC or Class ToC

Genomic DNA^c back to ToC or Class ToC

Genomic RNA^c back to ToC or Class ToC

Glycosylation Site^c back to ToC or Class ToC

Helix^c back to ToC or Class ToC

Induction^c back to ToC or Class ToC

Initiator Methionine^c back to ToC or Class ToC

Interaction^c back to ToC or Class ToC

Interaction participant^c back to ToC or Class ToC

INTRAMEM^c back to ToC or Class ToC

Journal^c back to ToC or Class ToC

Journal Citation^c back to ToC or Class ToC

Kinetics^c back to ToC or Class ToC

Known Sequence^c back to ToC or Class ToC

Lipid Binding^c back to ToC or Class ToC

Mass^c back to ToC or Class ToC

Mass Measurement^c back to ToC or Class ToC

Member Of Redudant Proteome^c back to ToC or Class ToC

Metal Ion Binding Site^c back to ToC or Class ToC

Method^c back to ToC or Class ToC

Modification^c back to ToC or Class ToC

Modified Residue^c back to ToC or Class ToC

Modified Sequence^c back to ToC or Class ToC

Molecule^c back to ToC or Class ToC

Molecule Processing^c back to ToC or Class ToC

Motif^c back to ToC or Class ToC

mRNA^c back to ToC or Class ToC

Mutagenesis Site^c back to ToC or Class ToC