Biological Spatial Ontology

These anatomical sections are applicable to most bilaterally symmetrical animals, but bipedal animals such as humans have more complex usage of these terms. For example, in post-embryonic humans a coronal plane is vertical and a transverse plane is horizontal, but for embryos and quadrupeds a coronal plane is horizontal and a transverse plane is vertical.

has super-classes: anatomical boundary^c
has sub-classes: horizontal plane^c, radial plane^c, sagittal plane^c, tangential plane^c, transverse plane^c
is in range of: orthogonal to^op

anatomical region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000070

to be merged into CARO

has super-classes: connected anatomical structure^c
has sub-classes: anatomical margin^c, anatomical side^c, anterior region^c, apical region^c, axial region^c, basal region^c, central region^c, contralateral region^c, deep region^c, distal region^c, dorsal region^c, ipsilateral region^c, lateral region^c, lower region^c, medial region^c, peripheral region^c, posterior region^c, proximal region^c, superficial region^c, upper region^c, ventral region^c

anatomical side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000054

has super-classes: anatomical region^c
has sub-classes: anterior side^c, apical side^c, axial side^c, basal side^c, central side^c, contralateral side^c, deep side^c, distal side^c, dorsal side^c, inferior side^c, ipsilateral side^c, lateral side^c, left side^c, lower side^c, medial side^c, peripheral side^c, posterior side^c, proximal side^c, right side^c, superficial side^c, superior side^c, upper side^c, ventral side^c
is in domain of: finishes axis^op, starts axis^op

anatomical surface^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000005

to be merged into CARO

has super-classes: anatomical boundary^c
has sub-classes: anterior surface^c, apical surface^c, basal surface^c, contralateral surface^c, distal surface^c, dorsal surface^c, ipsilateral surface^c, lateral surface^c, medial surface^c, posterior surface^c, proximal surface^c, ventral surface^c
is in domain of: surface of^op

animal-vegetal axis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000199

has super-classes: anatomical axis^c

anterior compartment^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000087

has super-classes: anatomical compartment^c

anterior margin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000671

is equivalent to: anatomical margin^c and (overlaps^op some anterior side^c)
has super-classes: anatomical margin^c; anterior region^c
has sub-classes: antero-dorsal margin^c, antero-lateral margin^c, antero-medial margin^c, antero-ventral margin^c

anterior region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000071

is equivalent to: anatomical region^c and (overlaps^op some anterior side^c)
has super-classes: anatomical region^c; overlaps^op some anterior side^c
has sub-classes: anterior margin^c, anterior-most region^c, antero-dorsal region^c, antero-lateral region^c, antero-medial region^c, antero-ventral region^c

anterior side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000055

has super-classes: anatomical side^c; starts axis^op some anterior-posterior axis^c; opposite to^op some posterior side^c; anterior to^op some posterior side^c

anterior surface^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000371

is equivalent to: anatomical surface^c and (surface of^op some anterior side^c)
has super-classes: anatomical surface^c; surface of^op some anterior side^c

anterior-most region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000036

has super-classes: anterior region^c

anterior-posterior axis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000013

In sponges, AP is used to indicate the direction of movement [in larval stage] (as it is in other metazoans that move, e.g., the basal bilaterians). [PM]

is equivalent to: anatomical axis^c and (orthogonal to^op some transverse plane^c)
has super-classes: anatomical axis^c; approximately perpendicular to^op some dorsal-ventral axis^c; orthogonal to^op some transverse plane^c

anterior-posterior gradient^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000052

is equivalent to: anatomical gradient^c and (has axis^op some anterior-posterior axis^c)
has super-classes: anatomical gradient^c; has axis^op some anterior-posterior axis^c

anterior/posterior compartment boundary^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000093

has super-classes: anatomical compartment boundary^c

antero-dorsal margin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000686

is equivalent to: anatomical margin^c and (overlaps^op some anterior side^c) and (overlaps^op some dorsal side^c)
has super-classes: antero-dorsal region^c; anterior margin^c; dorsal margin^c

antero-dorsal region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000026

is equivalent to: anatomical region^c and (overlaps^op some anterior side^c) and (overlaps^op some dorsal side^c)
has super-classes: anterior region^c; dorsal region^c
has sub-classes: antero-dorsal margin^c

antero-lateral margin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000045

is equivalent to: anatomical margin^c and (overlaps^op some anterior side^c) and (overlaps^op some lateral side^c)
has super-classes: antero-lateral region^c; anterior margin^c; lateral margin^c

antero-lateral region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000029

is equivalent to: anatomical region^c and (overlaps^op some anterior side^c) and (overlaps^op some lateral side^c)
has super-classes: anterior region^c; lateral region^c
has sub-classes: antero-lateral margin^c

antero-medial margin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000042

is equivalent to: anatomical margin^c and (overlaps^op some anterior side^c) and (overlaps^op some medial side^c)
has super-classes: antero-medial region^c; anterior margin^c; medial margin^c

antero-medial region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000050

is equivalent to: anatomical region^c and (overlaps^op some anterior side^c) and (overlaps^op some medial side^c)
has super-classes: anterior region^c; medial region^c
has sub-classes: antero-medial margin^c

antero-ventral margin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000688

is equivalent to: anatomical margin^c and (overlaps^op some anterior side^c) and (overlaps^op some ventral side^c)
has super-classes: antero-ventral region^c; anterior margin^c; ventral margin^c

antero-ventral region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000027

is equivalent to: anatomical region^c and (overlaps^op some anterior side^c) and (overlaps^op some ventral side^c)
has super-classes: anterior region^c; ventral region^c
has sub-classes: antero-ventral margin^c

apical margin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000673

is equivalent to: anatomical margin^c and (overlaps^op some apical side^c)
has super-classes: anatomical margin^c; apical region^c

apical region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000073

is equivalent to: anatomical region^c and (overlaps^op some apical side^c)
has super-classes: anatomical region^c; overlaps^op some apical side^c
has sub-classes: apical margin^c

apical side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000057

has super-classes: anatomical side^c; starts axis^op some apical-basal axis relative to substrate^c; opposite to^op some basal side^c

apical surface^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000373

is equivalent to: anatomical surface^c and (surface of^op some apical side^c)
has super-classes: anatomical surface^c; surface of^op some apical side^c

apical-basal axis relative to direction of growth^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000200

Plant structures that do not grow from an apical meristem, such as vascular leaves or petals, should be described using the proximal-distal axis. The proximal-distal axis may also be used for branches or lateral roots, and, in those cases, is concordant with the apical-basal axis.

has super-classes: anatomical axis^c

apical-basal axis relative to substrate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000014

has super-classes: anatomical axis^c

apical-basal gradient^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000023

is equivalent to: anatomical gradient^c and (follows axis^op some apical-basal axis relative to substrate^c)
has super-classes: anatomical gradient^c; follows axis^op some apical-basal axis relative to substrate^c

apical/basal compartment boundary^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000043

is equivalent to: anatomical compartment boundary^c and (has axis^op some apical-basal axis relative to substrate^c)
has super-classes: anatomical compartment boundary^c; has axis^op some apical-basal axis relative to substrate^c

axial region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000128

is equivalent to: anatomical region^c and (overlaps^op some axial side^c)
has super-classes: anatomical region^c; overlaps^op some axial side^c

axial side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000130

has super-classes: anatomical side^c

basal margin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000674

is equivalent to: anatomical margin^c and (overlaps^op some basal side^c)
has super-classes: anatomical margin^c; basal region^c

basal region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000074

is equivalent to: anatomical region^c and (overlaps^op some basal side^c)
has super-classes: anatomical region^c; overlaps^op some basal side^c
has sub-classes: basal margin^c

basal side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000058

The part of the organism attached to a substrate. Axis of symmetry.

has super-classes: anatomical side^c; finishes axis^op some apical-basal axis relative to substrate^c

basal surface^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000374

is equivalent to: anatomical surface^c and (surface of^op some basal side^c)
has super-classes: anatomical surface^c; surface of^op some basal side^c

biological entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CARO_0030000

has super-classes: independent continuant^c
has sub-classes: anatomical entity^c

biological_process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0008150

has super-classes: process^c

catalytic activity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0003824

has super-classes: molecular_function^c
has sub-classes: transferase activity^c

central region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000075

is equivalent to: anatomical region^c and (overlaps^op some central side^c)
has super-classes: anatomical region^c; overlaps^op some central side^c

central side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000059

central is not an axis direction

has super-classes: anatomical side^c

compartment boundary^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000088

has super-classes: anatomical compartment^c

connected anatomical structure^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CARO_0000003

has super-classes: material anatomical entity^c
has sub-classes: anatomical compartment^c, anatomical region^c

continuant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000002

has super-classes: part of^op only continuant^c
has sub-classes: independent continuant^c, specifically dependent continuant^c
is in domain of: causal relation between entities^op, causally influences^op, participates in^op
is in range of: causal relation between entities^op, causally influences^op, has participant^op
is disjoint with: occurrent^c

contralateral region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000076

inherited from flybase cv. not clear how this would be used

is equivalent to: anatomical region^c and (overlaps^op some contralateral side^c)
has super-classes: anatomical region^c; overlaps^op some contralateral side^c

contralateral side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000060

inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation.

has super-classes: anatomical side^c

contralateral surface^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000376

is equivalent to: anatomical surface^c and (surface of^op some contralateral side^c)
has super-classes: anatomical surface^c; surface of^op some contralateral side^c

curation status specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000078

is equivalent to: { ready for release , example to be eventually removed , metadata incomplete , uncurated , pending final vetting , metadata complete , organizational term , requires discussion , to be replaced with external ontology term }
has super-classes: data about an ontology part^c
has members: example to be eventually removedⁿⁱ, metadata completeⁿⁱ, metadata incompleteⁿⁱ, organizational termⁿⁱ, pending final vettingⁿⁱ, ready for releaseⁿⁱ, requires discussionⁿⁱ, to be replaced with external ontology termⁿⁱ, uncuratedⁿⁱ

data about an ontology part^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000102

has super-classes: data item^c
has sub-classes: curation status specification^c, denotator type^c, obsolescence reason specification^c

data item^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000027

has super-classes: information content entity^c
has sub-classes: data about an ontology part^c

deep region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000033

is equivalent to: anatomical region^c and (overlaps^op some deep side^c)
has super-classes: anatomical region^c; overlaps^op some deep side^c

deep side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000003

has super-classes: anatomical side^c; starts axis^op some deep-superficial axis^c; deep to^op some superficial side^c

deep-superficial axis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000012

Muscles are frequently categorized as 'deep', 'intermediate', and 'superficial'.

has super-classes: anatomical axis^c

deep-superficial gradient^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000021

is equivalent to: anatomical gradient^c and (follows axis^op some deep-superficial axis^c)
has super-classes: anatomical gradient^c; follows axis^op some deep-superficial axis^c

deep-superficial gradient (obsolete)^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_00000021

was made obsolete because the ID had too many digits

deep/superficial compartment boundary^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000041

is equivalent to: anatomical compartment boundary^c and (has axis^op some deep-superficial axis^c)
has super-classes: anatomical compartment boundary^c; has axis^op some deep-superficial axis^c

denotator type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000409

is equivalent to: { defined class , universal , named class expression }
has super-classes: data about an ontology part^c
has members: defined classⁿⁱ, named class expressionⁿⁱ, universalⁿⁱ

disposition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000016

has super-classes: realizable entity^c
has sub-classes: function^c
is in range of: has disposition^op
is disjoint with: role^c

distal margin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000678

is equivalent to: anatomical margin^c and (overlaps^op some distal side^c)
has super-classes: anatomical margin^c; distal region^c

distal region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000078

is equivalent to: anatomical region^c and (overlaps^op some distal side^c)
has super-classes: anatomical region^c; overlaps^op some distal side^c
has sub-classes: distal margin^c

distal side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000062

has super-classes: anatomical side^c; distal to^op some proximal side^c; finishes axis^op some proximal-distal axis^c

distal surface^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000378

is equivalent to: anatomical surface^c and (surface of^op some distal side^c)
has super-classes: anatomical surface^c; surface of^op some distal side^c

dorsal compartment^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000089

has super-classes: anatomical compartment^c

dorsal margin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000679

is equivalent to: anatomical margin^c and (overlaps^op some dorsal side^c)
has super-classes: anatomical margin^c; dorsal region^c
has sub-classes: antero-dorsal margin^c, dorso-lateral margin^c, dorso-medial margin^c, postero-dorsal margin^c

dorsal region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000079

is equivalent to: anatomical region^c and (overlaps^op some dorsal side^c)
has super-classes: anatomical region^c; overlaps^op some dorsal side^c
has sub-classes: antero-dorsal region^c, dorsal margin^c, dorsal-most region^c, dorso-lateral region^c, dorso-medial region^c, postero-dorsal region^c

dorsal side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000063

has super-classes: anatomical side^c; dorsal to^op some lateral side^c; starts axis^op some dorsal-ventral axis^c; opposite to^op some ventral side^c

dorsal surface^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000379

is equivalent to: anatomical surface^c and (surface of^op some dorsal side^c)
has super-classes: anatomical surface^c; surface of^op some dorsal side^c

dorsal-most region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000038

has super-classes: dorsal region^c

dorsal-ventral axis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000016

is equivalent to: anatomical axis^c and (orthogonal to^op some horizontal plane^c)
has super-classes: anatomical axis^c; orthogonal to^op some horizontal plane^c

dorsal-ventral gradient^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000053

is equivalent to: anatomical gradient^c and (has axis^op some dorsal-ventral axis^c)
has super-classes: anatomical gradient^c; has axis^op some dorsal-ventral axis^c

dorsal/ventral compartment boundary^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000094

has super-classes: anatomical compartment boundary^c

dorso-lateral margin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000680

is equivalent to: anatomical margin^c and (overlaps^op some dorsal side^c) and (overlaps^op some lateral side^c)
has super-classes: dorso-lateral region^c; dorsal margin^c; lateral margin^c

dorso-lateral region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000080

is equivalent to: anatomical region^c and (overlaps^op some dorsal side^c) and (overlaps^op some lateral side^c)
has super-classes: dorsal region^c; lateral region^c
has sub-classes: dorso-lateral margin^c

dorso-medial margin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000048

is equivalent to: anatomical margin^c and (overlaps^op some dorsal side^c) and (overlaps^op some medial side^c)
has super-classes: dorso-medial region^c; dorsal margin^c; medial margin^c

dorso-medial region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000069

is equivalent to: anatomical region^c and (overlaps^op some dorsal side^c) and (overlaps^op some medial side^c)
has super-classes: dorsal region^c; medial region^c
has sub-classes: dorso-medial margin^c

function^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000034

has super-classes: disposition^c
is in domain of: function of^op
is in range of: has function^op

horizontal plane^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000019

has super-classes: anatomical plane^c

immaterial anatomical entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CARO_0000007

has super-classes: immaterial entity^c; anatomical entity^c
has sub-classes: anatomical boundary^c, anatomical line^c

immaterial entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000141

has super-classes: independent continuant^c
has sub-classes: immaterial anatomical entity^c
is disjoint with: material entity^c

independent continuant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000004

has super-classes: continuant^c; part of^op only independent continuant^c
has sub-classes: biological entity^c, immaterial entity^c, material entity^c
is in domain of: adjacent to^op, capable of^op, has disposition^op, has function^op, has role^op
is in range of: adjacent to^op
is disjoint with: specifically dependent continuant^c

inferior side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000025

has super-classes: anatomical side^c

information content entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000030

has super-classes: b f o 0000031^c
has sub-classes: data item^c

ipsilateral region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000081

is equivalent to: anatomical region^c and (overlaps^op some ipsilateral side^c)
has super-classes: anatomical region^c; overlaps^op some ipsilateral side^c

ipsilateral side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000065

inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation.

has super-classes: anatomical side^c

ipsilateral surface^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000381

is equivalent to: anatomical surface^c and (surface of^op some ipsilateral side^c)
has super-classes: anatomical surface^c; surface of^op some ipsilateral side^c

kinase activity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0016301

has super-classes: transferase activity, transferring phosphorus-containing groups^c; is kinase activity^op

lateral margin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000682

is equivalent to: anatomical margin^c and (overlaps^op some lateral side^c)
has super-classes: anatomical margin^c; lateral region^c
has sub-classes: antero-lateral margin^c, dorso-lateral margin^c, postero-lateral margin^c, ventro-lateral margin^c

lateral region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000082

is equivalent to: anatomical region^c and (overlaps^op some lateral side^c)
has super-classes: anatomical region^c; overlaps^op some lateral side^c
has sub-classes: antero-lateral region^c, dorso-lateral region^c, lateral margin^c, postero-lateral region^c, ventro-lateral region^c

lateral side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000066

has super-classes: anatomical side^c

lateral surface^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000382

is equivalent to: anatomical surface^c and (surface of^op some lateral side^c)
has super-classes: anatomical surface^c; surface of^op some lateral side^c

left side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000000

has super-classes: anatomical side^c; left of^op some right side^c; starts axis^op some left-right axis^c

left-right axis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000017

is equivalent to: anatomical axis^c and (orthogonal to^op some sagittal plane^c)
has super-classes: anatomical axis^c; orthogonal to^op some sagittal plane^c

lower region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000032

is equivalent to: anatomical region^c and (overlaps^op some lower side^c)
has super-classes: anatomical region^c; overlaps^op some lower side^c

lower side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000002

Consider merging with inferior side.

has super-classes: anatomical side^c; finishes axis^op some upper-lower axis^c

material anatomical entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CARO_0000006

has super-classes: material entity^c; anatomical entity^c
has sub-classes: anatomical gradient^c, connected anatomical structure^c

material entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000040

has super-classes: independent continuant^c
has sub-classes: material anatomical entity^c
is in domain of: causal relation between material entity and a process^op, directly negatively regulates activity of^op, directly positively regulates activity of^op, directly regulates activity of^op, interacts with^op, regulates activity of^op
is in range of: directly negatively regulates activity of^op, directly positively regulates activity of^op, directly regulates activity of^op, interacts with^op, regulates activity of^op
is disjoint with: immaterial entity^c

medial margin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000683

is equivalent to: anatomical margin^c and (overlaps^op some medial side^c)
has super-classes: anatomical margin^c; medial region^c
has sub-classes: antero-medial margin^c, dorso-medial margin^c, postero-medial margin^c, ventro-medial margin^c

medial region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000083

is equivalent to: anatomical region^c and (overlaps^op some medial side^c)
has super-classes: anatomical region^c; overlaps^op some medial side^c
has sub-classes: antero-medial region^c, dorso-medial region^c, medial margin^c, postero-medial region^c, ventro-medial region^c

medial side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000067

a point in the centre of the organism (where the left-right axis intersects the midsagittal plane)

has super-classes: anatomical side^c

medial surface^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000383

is equivalent to: anatomical surface^c and (surface of^op some medial side^c)
has super-classes: anatomical surface^c; surface of^op some medial side^c

medial-external axis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000196

The medial-external axis could apply to a sphere-shaped body.

has super-classes: anatomical axis^c
has sub-classes: medial-lateral axis^c, medial-radial axis^c

medial-lateral axis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0001001

Properly, the ML axis is a half axis; practically, its usage is less clumsy and less linguistically biased than "left-right". The terms may still be used relatively to describe locations along the LR axis. The gills are medial to the operculum, but lateral to the heart.

has super-classes: medial-external axis^c

medial-radial axis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000197

In plants, lateral growth (http://purl.obolibrary.org/obo/GO_0080190) run is along the medial/radial axis (from medial to radial) [RW]. Also applies to radially symmetrical animals such as sea urchins, cnidarians [PM] or applies to more-or-less cylindrical body parts in animals, like limbs.

has super-classes: medial-external axis^c

midsagittal plane^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000009

only in bilaterally symmetrical organisms

has super-classes: sagittal plane^c

molecular_function^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0003674

has super-classes: process^c
has sub-classes: catalytic activity^c

obsolescence reason specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000225

is equivalent to: { failed exploratory term , term split , placeholder removed , terms merged , term imported }
has super-classes: data about an ontology part^c
has members: failed exploratory termⁿⁱ, placeholder removedⁿⁱ, term importedⁿⁱ, term splitⁿⁱ, terms mergedⁿⁱ

occurrent^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000003

has super-classes: part of^op only occurrent^c
has sub-classes: process^c
is in domain of: causal relation between processes^op, has participant^op, preceded by^op, precedes^op, temporally related to^op
is in range of: causal relation between processes^op, participates in^op, preceded by^op, precedes^op, temporally related to^op
is disjoint with: continuant^c

oral-aboral axis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000198

has super-classes: anatomical axis^c

parasagittal plane^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000008

has super-classes: sagittal plane^c

peripheral region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000127

is equivalent to: anatomical region^c and (overlaps^op some peripheral side^c)
has super-classes: anatomical region^c; overlaps^op some peripheral side^c

peripheral side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000129

has super-classes: anatomical side^c

posterior compartment^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000090

has super-classes: anatomical compartment^c

posterior margin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000672

is equivalent to: anatomical margin^c and (overlaps^op some posterior side^c)
has super-classes: anatomical margin^c; posterior region^c
has sub-classes: postero-dorsal margin^c, postero-lateral margin^c, postero-medial margin^c, postero-ventral margin^c

posterior region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000072

is equivalent to: anatomical region^c and (overlaps^op some posterior side^c)
has super-classes: anatomical region^c; overlaps^op some posterior side^c
has sub-classes: posterior margin^c, posterior-most region^c, postero-dorsal region^c, postero-lateral region^c, postero-medial region^c, postero-ventral region^c

posterior side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000056

has super-classes: anatomical side^c; posterior to^op some anterior side^c; finishes axis^op some anterior-posterior axis^c

posterior surface^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000372

is equivalent to: anatomical surface^c and (surface of^op some posterior side^c)
has super-classes: anatomical surface^c; surface of^op some posterior side^c

posterior-most region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000037

has super-classes: posterior region^c

postero-dorsal margin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000687

is equivalent to: anatomical margin^c and (overlaps^op some posterior side^c) and (overlaps^op some dorsal side^c)
has super-classes: postero-dorsal region^c; posterior margin^c; dorsal margin^c

postero-dorsal region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000030

is equivalent to: anatomical region^c and (overlaps^op some posterior side^c) and (overlaps^op some dorsal side^c)
has super-classes: posterior region^c; dorsal region^c
has sub-classes: postero-dorsal margin^c

postero-lateral margin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000047

is equivalent to: anatomical margin^c and (overlaps^op some posterior side^c) and (overlaps^op some lateral side^c)
has super-classes: postero-lateral region^c; posterior margin^c; lateral margin^c

postero-lateral region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000028

is equivalent to: anatomical region^c and (overlaps^op some posterior side^c) and (overlaps^op some lateral side^c)
has super-classes: posterior region^c; lateral region^c
has sub-classes: postero-lateral margin^c

postero-medial margin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000046

is equivalent to: anatomical margin^c and (overlaps^op some posterior side^c) and (overlaps^op some medial side^c)
has super-classes: postero-medial region^c; posterior margin^c; medial margin^c

postero-medial region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000064

is equivalent to: anatomical region^c and (overlaps^op some posterior side^c) and (overlaps^op some medial side^c)
has super-classes: posterior region^c; medial region^c
has sub-classes: postero-medial margin^c

postero-ventral margin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000689

is equivalent to: anatomical margin^c and (overlaps^op some posterior side^c) and (overlaps^op some ventral side^c)
has super-classes: postero-ventral region^c; posterior margin^c; ventral margin^c

postero-ventral region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000035

is equivalent to: anatomical region^c and (overlaps^op some posterior side^c) and (overlaps^op some ventral side^c)
has super-classes: posterior region^c; ventral region^c
has sub-classes: postero-ventral margin^c

process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000015

has super-classes: occurrent^c
has sub-classes: biological_process^c, molecular_function^c
is in domain of: has component process^op, has input^op, regulated by^op, regulates^op
is in range of: capable of^op, causal relation between material entity and a process^op, has component process^op, regulated by^op, regulates^op

proximal margin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000677

is equivalent to: anatomical margin^c and (overlaps^op some proximal side^c)
has super-classes: anatomical margin^c; proximal region^c

proximal region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000077

is equivalent to: anatomical region^c and (overlaps^op some proximal side^c)
has super-classes: anatomical region^c; overlaps^op some proximal side^c
has sub-classes: proximal margin^c

proximal side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000061

has super-classes: anatomical side^c; starts axis^op some proximal-distal axis^c; opposite to^op some distal side^c

proximal surface^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000377

is equivalent to: anatomical surface^c and (surface of^op some proximal side^c)
has super-classes: anatomical surface^c; surface of^op some proximal side^c

proximal-distal axis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000015

In some communities, proximal and distal are used when specifying the position of parts of elements that are contained within the body, such as gill arches or vertebral spines. In these cases, use of the classes medial-lateral axis or medial-external axis are more appropriate.

has super-classes: anatomical axis^c

proximal-distal gradient^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000024

is equivalent to: anatomical gradient^c and (follows axis^op some proximal-distal axis^c)
has super-classes: anatomical gradient^c; follows axis^op some proximal-distal axis^c

proximal/distal compartment boundary^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000044

is equivalent to: anatomical compartment boundary^c and (has axis^op some proximal-distal axis^c)
has super-classes: anatomical compartment boundary^c; has axis^op some proximal-distal axis^c

quality^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000019

has super-classes: specifically dependent continuant^c; part of^op only quality^c
is in range of: has quality^op
is disjoint with: realizable entity^c

radial plane^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000202

Need to add logical definitions.

has super-classes: anatomical plane^c

realizable entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000017

has super-classes: specifically dependent continuant^c; part of^op only realizable entity^c
has sub-classes: disposition^c, role^c
is disjoint with: quality^c

right side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000007

has super-classes: anatomical side^c; finishes axis^op some left-right axis^c

role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000023

has super-classes: realizable entity^c
is in range of: has role^op
is disjoint with: disposition^c

sagittal plane^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000417

is equivalent to: anatomical plane^c and (orthogonal to^op some left-right axis^c) and (parallel to^op some anterior-posterior axis^c) and (parallel to^op some dorsal-ventral axis^c)
has super-classes: anatomical axis^c; anatomical plane^c; parallel to^op some anterior-posterior axis^c; orthogonal to^op some left-right axis^c; parallel to^op some dorsal-ventral axis^c
has sub-classes: midsagittal plane^c, parasagittal plane^c

specifically dependent continuant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000020

has super-classes: continuant^c; part of^op only specifically dependent continuant^c
has sub-classes: quality^c, realizable entity^c
is in range of: has characteristic^op
is disjoint with: independent continuant^c

superficial region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000034

is equivalent to: anatomical region^c and (overlaps^op some superficial side^c)
has super-classes: anatomical region^c; overlaps^op some superficial side^c

superficial side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000004

has super-classes: anatomical side^c; finishes axis^op some deep-superficial axis^c

superior side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000022

has super-classes: anatomical side^c

tangential plane^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000201

Need to add logical definitions.

has super-classes: anatomical plane^c

transferase activity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0016740

has super-classes: catalytic activity^c
has sub-classes: transferase activity, transferring phosphorus-containing groups^c

transferase activity, transferring phosphorus-containing groups^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0016772

has super-classes: transferase activity^c
has sub-classes: kinase activity^c

transverse plane^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000018

has super-classes: anatomical plane^c

upper region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000031

is equivalent to: anatomical region^c and (overlaps^op some upper side^c)
has super-classes: anatomical region^c; overlaps^op some upper side^c

upper side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000001

Consider merging with superior side.

has super-classes: anatomical side^c; starts axis^op some upper-lower axis^c

upper-lower axis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000011

has super-classes: anatomical axis^c

upper-lower gradient^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000020

is equivalent to: anatomical gradient^c and (follows axis^op some upper-lower axis^c)
has super-classes: anatomical gradient^c; follows axis^op some upper-lower axis^c

upper/lower compartment boundary^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000040

is equivalent to: anatomical compartment boundary^c and (has axis^op some upper-lower axis^c)
has super-classes: anatomical compartment boundary^c; has axis^op some upper-lower axis^c

ventral compartment^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000091

has super-classes: anatomical compartment^c

ventral margin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000684

is equivalent to: anatomical margin^c and (overlaps^op some ventral side^c)
has super-classes: anatomical margin^c; ventral region^c
has sub-classes: antero-ventral margin^c, postero-ventral margin^c, ventro-lateral margin^c, ventro-medial margin^c

ventral region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000084

is equivalent to: anatomical region^c and (overlaps^op some ventral side^c)
has super-classes: anatomical region^c; overlaps^op some ventral side^c
has sub-classes: antero-ventral region^c, postero-ventral region^c, ventral margin^c, ventral-most region^c, ventro-lateral region^c, ventro-medial region^c

ventral side^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000068

has super-classes: anatomical side^c; finishes axis^op some dorsal-ventral axis^c

ventral surface^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000384

is equivalent to: anatomical surface^c and (surface of^op some ventral side^c)
has super-classes: anatomical surface^c; surface of^op some ventral side^c

ventral-most region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000039

has super-classes: ventral region^c

ventro-lateral margin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000685

This is an example of a composition of two axis positions

is equivalent to: anatomical margin^c and (overlaps^op some lateral side^c) and (overlaps^op some ventral side^c)
has super-classes: ventro-lateral region^c; lateral margin^c; ventral margin^c

ventro-lateral region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000085

This is an example of a composition of two axis positions.

is equivalent to: anatomical region^c and (overlaps^op some lateral side^c) and (overlaps^op some ventral side^c)
has super-classes: lateral region^c; ventral region^c
has sub-classes: ventro-lateral margin^c

ventro-medial margin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000049

is equivalent to: anatomical margin^c and (overlaps^op some medial side^c) and (overlaps^op some ventral side^c)
has super-classes: ventro-medial region^c; medial margin^c; ventral margin^c

ventro-medial region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000112

is equivalent to: anatomical region^c and (overlaps^op some medial side^c) and (overlaps^op some ventral side^c)
has super-classes: medial region^c; ventral region^c
has sub-classes: ventro-medial margin^c

Object Properties

aboral to
acts upstream of
acts upstream of or within
acts upstream of or within, negative effect
acts upstream of or within, positive effect
acts upstream of, negative effect
acts upstream of, positive effect
adjacent to
anatomical relation
anterior to
approximately perpendicular to
capable of
capable of negatively regulating
capable of part of
capable of positively regulating
capable of regulating
causal agent in process
causal relation between entities
causal relation between material entity and a process
causal relation between processes
causally downstream of
causally downstream of or within
causally influenced by
causally influences
causally related to
causally upstream of
causally upstream of or within
causally upstream of or within, negative effect
causally upstream of or within, positive effect
causally upstream of, negative effect
causally upstream of, positive effect
characteristic of
characteristic of part of
contralateral to
deep to
depends on
directly negatively regulated by
directly negatively regulates
directly negatively regulates activity of
directly positively regulated by
directly positively regulates
directly positively regulates activity of
directly regulated by
directly regulates
directly regulates activity of
disposition of
distal to
distalmost part of
dorsal to
enabled by
enables
enables subfunction
ends after
finishes axis
follows axis
function of
functionally related to
has axis
has characteristic
has component
has component activity
has component process
has disposition
has effector activity
has end point
has function
has input
has negative regulatory component activity
has part
has part structure that is capable of
has participant
has positive regulatory component activity
has quality
has regulatory component activity
has role
has start point
helper property (not for use in curation)
immediately anterior to
immediately causally downstream of
immediately causally upstream of
immediately deep to
immediately distal to
immediately dorsal to
immediately left of
immediately posterior to
immediately preceded by
immediately precedes
immediately proximal to
immediately right of
immediately superficial to
immediately ventral to
in anterior side of
in deep part of
in distal side of
in dorsal side of
in lateral side of
in left side of
in posterior side of
in proximal side of
in right side of
in superficial part of
in ventral side of
input of
interaction relation helper property
interacts with
intersects midsagittal plane of
involved in
involved in negative regulation of
involved in or involved in regulation of
involved in positive regulation of
involved in regulation of
ipsilateral to
is kinase activity
lateral to
left of
mereotopologically related to
molecular interaction relation helper property
molecularly interacts with
negatively regulated by
negatively regulates
obsolete surrounded_by
obsolete surrounds
opposite to
oral to
orthogonal to
overlaps
parallel to
part of
part of structure that is capable of
participates in
passes through
phosphorylates
positively regulated by
positively regulates
postaxial to
postaxialmost part of
posterior to
preaxial to
preaxialmost part of
preceded by
precedes
process has causal agent
proximal to
proximalmost part of
quality of
regulated by
regulates
regulates activity of
right of
role of
spatially disjoint from
starts axis
superficial to
surface of
temporally related to
ventral to
vicinity of
X medial to y if x is closer to the midsagittal plane than y.

aboral to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015202

acts upstream of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002263

has super-properties: acts upstream of or within^op
has sub-properties: acts upstream of, negative effect^op, acts upstream of, positive effect^op, involved in regulation of^op
has sub-property chains: enables^op o causally upstream of^op

acts upstream of or within^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002264

has super-properties: causal agent in process^op
has sub-properties: acts upstream of^op, acts upstream of or within, negative effect^op, acts upstream of or within, positive effect^op, involved in or involved in regulation of^op
has sub-property chains: enables^op o causally upstream of or within^op

acts upstream of or within, negative effect^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004033

has super-properties: acts upstream of or within^op
has sub-properties: acts upstream of, negative effect^op
has sub-property chains: enables^op o causally upstream of or within, negative effect^op

acts upstream of or within, positive effect^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004032

has super-properties: acts upstream of or within^op
has sub-properties: acts upstream of, positive effect^op
has sub-property chains: enables^op o causally upstream of or within, positive effect^op

acts upstream of, negative effect^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004035

has super-properties: acts upstream of^op; acts upstream of or within, negative effect^op
has sub-property chains: enables^op o causally upstream of, negative effect^op

acts upstream of, positive effect^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004034

has super-properties: acts upstream of^op; acts upstream of or within, positive effect^op
has sub-property chains: enables^op o causally upstream of, positive effect^op

adjacent to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002220

has characteristics: symmetric

has super-properties: spatially disjoint from^op
has domain: independent continuant^c
has range: independent continuant^c

anatomical relation^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000095

anterior to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000096

has characteristics: transitive

has sub-properties: immediately anterior to^op
is inverse of: posterior to^op

approximately perpendicular to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000104

has domain: anatomical axis^c
has range: anatomical axis^c

capable of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002215

has super-properties: capable of part of^op
has sub-properties: enables^op
has domain: independent continuant^c
has range: process^c

capable of negatively regulating^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002597

has super-properties: capable of regulating^op
has sub-property chains: capable of^op o negatively regulates^op

capable of part of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002216

has super-properties: functionally related to^op; causal agent in process^op
has sub-properties: capable of^op
has sub-property chains: capable of^op o part of^op

capable of positively regulating^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002598

has super-properties: capable of regulating^op
has sub-property chains: capable of^op o positively regulates^op

capable of regulating^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002596

has super-properties: causal agent in process^op
has sub-properties: capable of negatively regulating^op, capable of positively regulating^op
has sub-property chains: capable of^op o regulates^op

causal agent in process^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002500

has super-properties: causal relation between material entity and a process^op
has sub-properties: acts upstream of or within^op, capable of part of^op, capable of regulating^op, involved in or involved in regulation of^op
is inverse of: process has causal agent^op

causal relation between entities^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002506

has super-properties: causally related to^op
has sub-properties: causally influenced by^op, causally influences^op
has domain: continuant^c
has range: continuant^c

causal relation between material entity and a process^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002595

has super-properties: causally related to^op
has sub-properties: causal agent in process^op, has part structure that is capable of^op
has domain: material entity^c
has range: process^c

causal relation between processes^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002501

has super-properties: causally related to^op
has sub-properties: causally downstream of or within^op, causally upstream of or within^op
has domain: occurrent^c
has range: occurrent^c

causally downstream of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002404

has super-properties: preceded by^op; causally downstream of or within^op
has sub-properties: immediately causally downstream of^op
is inverse of: causally upstream of^op

causally downstream of or within^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002427

has characteristics: transitive

has super-properties: causal relation between processes^op
has sub-properties: causally downstream of^op, regulated by^op
is inverse of: causally upstream of or within^op

causally influenced by^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002559

has super-properties: causal relation between entities^op
is inverse of: causally influences^op

causally influences^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002566

has super-properties: causal relation between entities^op
has sub-properties: regulates activity of^op
has domain: continuant^c
has range: continuant^c
is inverse of: causally influenced by^op
has sub-property chains: enables^op o causally upstream of^op o enabled by^op; enables^op o causally upstream of^op o has input^op

causally related to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002410

has sub-properties: causal relation between entities^op, causal relation between material entity and a process^op, causal relation between processes^op, process has causal agent^op

causally upstream of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002411

has characteristics: transitive

has super-properties: precedes^op; causally upstream of or within^op
has sub-properties: causally upstream of, negative effect^op, causally upstream of, positive effect^op, immediately causally upstream of^op, regulates^op
is inverse of: causally downstream of^op

causally upstream of or within^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002418

has characteristics: transitive

has super-properties: causal relation between processes^op
has sub-properties: causally upstream of^op, causally upstream of or within, negative effect^op, causally upstream of or within, positive effect^op
is inverse of: causally downstream of or within^op

causally upstream of or within, negative effect^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004046

has super-properties: causally upstream of or within^op
has sub-properties: causally upstream of, negative effect^op

causally upstream of or within, positive effect^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004047

has super-properties: causally upstream of or within^op
has sub-properties: causally upstream of, positive effect^op

causally upstream of, negative effect^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002305

holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y

has super-properties: causally upstream of^op; causally upstream of or within, negative effect^op
has sub-properties: negatively regulates^op

causally upstream of, positive effect^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002304

holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y

has super-properties: causally upstream of^op; causally upstream of or within, positive effect^op
has sub-properties: positively regulates^op

characteristic of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000052

Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.

has characteristics: functional

has super-properties: characteristic of part of^op
has sub-properties: disposition of^op, function of^op, quality of^op, role of^op
is inverse of: has characteristic^op

characteristic of part of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002314

has super-properties: depends on^op
has sub-properties: characteristic of^op
has sub-property chains: characteristic of part of^op o part of^op; characteristic of^op o part of^op

contralateral to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000106

has characteristics: symmetric

has super-properties: opposite to^op

deep to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000107

has characteristics: transitive

has sub-properties: immediately deep to^op
is inverse of: superficial to^op

depends on^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002502

has sub-properties: characteristic of part of^op

directly negatively regulated by^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002023

has super-properties: directly regulated by^op
is inverse of: directly negatively regulates^op

directly negatively regulates^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002630

has super-properties: negatively regulates^op; directly regulates^op
is inverse of: directly negatively regulated by^op

directly negatively regulates activity of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002449

has super-properties: directly regulates activity of^op
has domain: material entity^c
has range: material entity^c
has sub-property chains: enables^op o directly negatively regulates^op o enabled by^op

directly positively regulated by^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002024

has super-properties: directly regulated by^op
is inverse of: directly positively regulates^op

directly positively regulates^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002629

has super-properties: positively regulates^op; directly regulates^op
is inverse of: directly positively regulated by^op

directly positively regulates activity of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002450

has super-properties: directly regulates activity of^op
has domain: material entity^c
has range: material entity^c
has sub-property chains: enables^op o directly positively regulates^op o enabled by^op

directly regulated by^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002022

Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.

has super-properties: regulated by^op
has sub-properties: directly negatively regulated by^op, directly positively regulated by^op
is inverse of: directly regulates^op

directly regulates^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002578

has super-properties: regulates^op; immediately causally upstream of^op
has sub-properties: directly negatively regulates^op, directly positively regulates^op
is inverse of: directly regulated by^op

directly regulates activity of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002448

has super-properties: molecularly interacts with^op; regulates activity of^op
has sub-properties: directly negatively regulates activity of^op, directly positively regulates activity of^op
has domain: material entity^c
has range: material entity^c
has sub-property chains: enables^op o regulates^op o enabled by^op

disposition of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000092

This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.

has super-properties: characteristic of^op
is inverse of: has disposition^op

distal to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000097

has characteristics: transitive

has sub-properties: immediately distal to^op
is inverse of: proximal to^op

distalmost part of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0001108

has super-properties: in distal side of^op

dorsal to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000098

has characteristics: transitive

has sub-properties: immediately dorsal to^op
is inverse of: ventral to^op

enabled by^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002333

has super-properties: has participant^op; functionally related to^op
is inverse of: enables^op

enables^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002327

has super-properties: capable of^op
is inverse of: enabled by^op
has sub-property chains: enables^op o has component activity^op; enables^op o has part^op

enables subfunction^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004031

has super-properties: functionally related to^op
has sub-property chains: enables^op o has part^op

ends after^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002086

X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)

has characteristics: transitive

has super-properties: temporally related to^op
has sub-properties: preceded by^op

finishes axis^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015001

A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. If s finishes axis x, and x has end point p, then x overlaps p

has domain: anatomical side^c
has range: anatomical axis^c

follows axis^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015002

has range: anatomical axis^c

function of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000079

has super-properties: characteristic of^op
has domain: function^c
is inverse of: has function^op

functionally related to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002328

has sub-properties: capable of part of^op, enabled by^op, enables subfunction^op, has part structure that is capable of^op, input of^op, involved in or involved in regulation of^op, part of structure that is capable of^op

has axis^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015003

has characteristic^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000053

has characteristics: inverse functional

has sub-properties: has disposition^op, has function^op, has quality^op, has role^op
has range: specifically dependent continuant^c
is inverse of: characteristic of^op

has component^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002180

has super-properties: has part^op
has sub-properties: has component process^op

has component activity^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002017

A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B.

has super-properties: has component process^op
has sub-properties: has effector activity^op, has regulatory component activity^op

has component process^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002018

has super-properties: has component^op
has sub-properties: has component activity^op
has domain: process^c
has range: process^c

has disposition^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000091

has super-properties: has characteristic^op
has domain: independent continuant^c
has range: disposition^c
is inverse of: disposition of^op

has effector activity^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002025

This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations.

has characteristics: functional

has super-properties: has component activity^op

has end point^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015004

Axes can be defined in a given species by subtyping the relevant axis type and stating a end and end point

has domain: anatomical axis^c
has range: anatomical entity^c

has function^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000085

has super-properties: has characteristic^op
has domain: independent continuant^c
has range: function^c
is inverse of: function of^op

has input^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002233

has super-properties: has participant^op
has domain: process^c
is inverse of: input of^op

has negative regulatory component activity^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002014

By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'.

has super-properties: has regulatory component activity^op; negatively regulated by^op

has part^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000051

has characteristics: transitive

has super-properties: overlaps^op
has sub-properties: has component^op
is inverse of: part of^op

has part structure that is capable of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002584

has super-properties: functionally related to^op; causal relation between material entity and a process^op
has sub-property chains: has part^op o capable of^op

has participant^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000057

has sub-properties: enabled by^op, has input^op
has domain: occurrent^c
has range: continuant^c
is inverse of: participates in^op
has sub-property chains: has part^op o has participant^op

has positive regulatory component activity^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002015

By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'.

has super-properties: has regulatory component activity^op; positively regulated by^op

has quality^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000086

has super-properties: has characteristic^op
has range: quality^c
is inverse of: quality of^op

has regulatory component activity^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002013

has super-properties: has component activity^op; regulated by^op
has sub-properties: has negative regulatory component activity^op, has positive regulatory component activity^op

has role^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000087

has super-properties: has characteristic^op
has domain: independent continuant^c
has range: role^c
is inverse of: role of^op

has start point^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/#_has_start_point

Axes can be defined in a given species by subtyping the relevant axis type and stating a start and end point.

has domain: anatomical axis^c
has range: anatomical entity^c

helper property (not for use in curation)^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002464

has sub-properties: interaction relation helper property^op

immediately anterior to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015009

has super-properties: anterior to^op
is inverse of: immediately posterior to^op

immediately causally downstream of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002405

has super-properties: immediately preceded by^op; causally downstream of^op
is inverse of: immediately causally upstream of^op

immediately causally upstream of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002412

has super-properties: immediately precedes^op; causally upstream of^op
has sub-properties: directly regulates^op
is inverse of: immediately causally downstream of^op

immediately deep to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0001107

has super-properties: deep to^op
is inverse of: immediately superficial to^op

immediately distal to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015010

has super-properties: distal to^op
is inverse of: immediately proximal to^op

immediately dorsal to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015011

has super-properties: dorsal to^op
is inverse of: immediately ventral to^op

immediately left of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015016

has super-properties: left of^op
is inverse of: immediately right of^op

immediately posterior to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015012

has super-properties: posterior to^op
is inverse of: immediately anterior to^op

immediately preceded by^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002087

X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)

has super-properties: preceded by^op
has sub-properties: immediately causally downstream of^op
is inverse of: immediately precedes^op

immediately precedes^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002090

X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)

has super-properties: precedes^op
has sub-properties: immediately causally upstream of^op
is inverse of: immediately preceded by^op

immediately proximal to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015013

has super-properties: proximal to^op
is inverse of: immediately distal to^op

immediately right of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015017

has super-properties: right of^op
is inverse of: immediately left of^op

immediately superficial to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015014

has super-properties: superficial to^op
is inverse of: immediately deep to^op

immediately ventral to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015015

has super-properties: ventral to^op
is inverse of: immediately dorsal to^op

in anterior side of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000123

has super-properties: part of^op

in deep part of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0001101

has super-properties: part of^op

in distal side of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000125

has super-properties: part of^op
has sub-properties: distalmost part of^op

in dorsal side of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015101

has super-properties: part of^op

in lateral side of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000126

has super-properties: part of^op
has sub-properties: in left side of^op, in right side of^op

in left side of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000120

has super-properties: in lateral side of^op

in posterior side of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000122

has super-properties: part of^op

in proximal side of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000124

has super-properties: part of^op
has sub-properties: proximalmost part of^op

in right side of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000121

has super-properties: in lateral side of^op

in superficial part of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0001100

has super-properties: part of^op

in ventral side of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015102

has super-properties: part of^op

input of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002352

has super-properties: participates in^op; functionally related to^op
is inverse of: has input^op

interaction relation helper property^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002563

has super-properties: helper property (not for use in curation)^op
has sub-properties: molecular interaction relation helper property^op

interacts with^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002434

has characteristics: symmetric

has sub-properties: molecularly interacts with^op
has domain: material entity^c
has range: material entity^c

intersects midsagittal plane of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0005001

has super-properties: part of^op

involved in^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002331

has super-properties: participates in^op; involved in or involved in regulation of^op
has sub-property chains: enables^op o part of^op; involved in^op o part of^op

involved in negative regulation of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002430

has super-properties: involved in regulation of^op
has sub-property chains: involved in^op o negatively regulates^op; enables^op o negatively regulates^op

involved in or involved in regulation of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002431

has super-properties: acts upstream of or within^op; functionally related to^op; causal agent in process^op
has sub-properties: involved in^op, involved in regulation of^op

involved in positive regulation of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002429

has super-properties: involved in regulation of^op
has sub-property chains: involved in^op o positively regulates^op; enables^op o positively regulates^op

involved in regulation of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002428

has super-properties: acts upstream of^op; involved in or involved in regulation of^op
has sub-properties: involved in negative regulation of^op, involved in positive regulation of^op
has sub-property chains: involved in^op o regulates^op; enables^op o regulates^op

ipsilateral to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000105

is kinase activity^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002481

has super-properties: molecular interaction relation helper property^op

lateral to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000114

has characteristics: transitive

is inverse of: X medial to y if x is closer to the midsagittal plane than y.^op

left of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000110

has characteristics: transitive

has sub-properties: immediately left of^op
is inverse of: right of^op

mereotopologically related to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002323

has sub-properties: overlaps^op, spatially disjoint from^op

molecular interaction relation helper property^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002564

has super-properties: interaction relation helper property^op
has sub-properties: is kinase activity^op

molecularly interacts with^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002436

has characteristics: symmetric

has super-properties: interacts with^op
has sub-properties: directly regulates activity of^op, phosphorylates^op

negatively regulated by^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002335

has super-properties: regulated by^op
has sub-properties: has negative regulatory component activity^op
is inverse of: negatively regulates^op

negatively regulates^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002212

has super-properties: regulates^op; causally upstream of, negative effect^op
has sub-properties: directly negatively regulates^op
is inverse of: negatively regulated by^op

obsolete surrounded_by^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000109

obsolete surrounds^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000101

opposite to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000113

has sub-properties: contralateral to^op

oral to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015201

orthogonal to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015005

has domain: anatomical axis^c
has range: anatomical plane^c

overlaps^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002131

"(forall (x y) (iff (overlaps x y) (exists (z) (and (part of z x) (part of z y)))))" CLIF []

has super-properties: mereotopologically related to^op
has sub-properties: has part^op, part of^op
has sub-property chains: part of^op o part of^op; has part^op o overlaps^op; overlaps^op o part of^op; has part^op o part of^op

parallel to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/bspo#parallel_to

part of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000050

has characteristics: transitive

has super-properties: overlaps^op
has sub-properties: in anterior side of^op, in deep part of^op, in distal side of^op, in dorsal side of^op, in lateral side of^op, in posterior side of^op, in proximal side of^op, in superficial part of^op, in ventral side of^op, intersects midsagittal plane of^op, postaxialmost part of^op, preaxialmost part of^op
is inverse of: has part^op

part of structure that is capable of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002329

has super-properties: functionally related to^op
has sub-property chains: part of^op o capable of^op

participates in^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000056

has sub-properties: input of^op, involved in^op
has domain: continuant^c
has range: occurrent^c
is inverse of: has participant^op

passes through^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015006

has domain: anatomical axis^c

phosphorylates^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002447

has super-properties: molecularly interacts with^op

positively regulated by^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002336

has super-properties: regulated by^op
has sub-properties: has positive regulatory component activity^op
is inverse of: positively regulates^op

positively regulates^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002213

has characteristics: transitive

has super-properties: regulates^op; causally upstream of, positive effect^op
has sub-properties: directly positively regulates^op
is inverse of: positively regulated by^op
has sub-property chains: negatively regulates^op o negatively regulates^op

postaxial to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0001114

postaxialmost part of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0001115

has super-properties: part of^op

posterior to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000099

has characteristics: transitive

has sub-properties: immediately posterior to^op
is inverse of: anterior to^op

preaxial to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_1000000

preaxialmost part of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0001113

has super-properties: part of^op

preceded by^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000062

has characteristics: transitive

has super-properties: ends after^op
has sub-properties: causally downstream of^op, immediately preceded by^op
has domain: occurrent^c
has range: occurrent^c
is inverse of: precedes^op
has sub-property chains: part of^op o preceded by^op

precedes^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000063

has characteristics: transitive

has super-properties: temporally related to^op
has sub-properties: causally upstream of^op, immediately precedes^op
has domain: occurrent^c
has range: occurrent^c
is inverse of: preceded by^op
has sub-property chains: part of^op o precedes^op

process has causal agent^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002608

has super-properties: causally related to^op
is inverse of: causal agent in process^op

proximal to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000100

The elbow is proximal to the hand, but distal to the shoulder.

has characteristics: transitive

has sub-properties: immediately proximal to^op
is inverse of: distal to^op

proximalmost part of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0001106

has super-properties: in proximal side of^op

quality of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000080

has super-properties: characteristic of^op
is inverse of: has quality^op

regulated by^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002334

has characteristics: transitive

has super-properties: causally downstream of or within^op
has sub-properties: directly regulated by^op, has regulatory component activity^op, negatively regulated by^op, positively regulated by^op
has domain: process^c
has range: process^c
is inverse of: regulates^op

regulates^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002211

has characteristics: transitive

has super-properties: causally upstream of^op
has sub-properties: directly regulates^op, negatively regulates^op, positively regulates^op
has domain: process^c
has range: process^c
is inverse of: regulated by^op
has sub-property chains: directly regulates^op o directly regulates^op; regulates^op o has effector activity^op

regulates activity of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0011002

has super-properties: causally influences^op
has sub-properties: directly regulates activity of^op
has domain: material entity^c
has range: material entity^c

right of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000111

has characteristics: transitive

has sub-properties: immediately right of^op
is inverse of: left of^op

role of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000081

has super-properties: characteristic of^op
is inverse of: has role^op

spatially disjoint from^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002163

has super-properties: mereotopologically related to^op
has sub-properties: adjacent to^op

starts axis^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015007

A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. . If s starts axis x, and x has start point p, then x overlaps p

has domain: anatomical side^c
has range: anatomical axis^c

superficial to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000108

has characteristics: transitive

has sub-properties: immediately superficial to^op
is inverse of: deep to^op

surface of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015008

placeholder. used for relation between anatomical surface and an anatomical side.

has domain: anatomical surface^c

temporally related to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002222

A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations.

has sub-properties: ends after^op, precedes^op
has domain: occurrent^c
has range: occurrent^c

ventral to^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000102

has characteristics: transitive

has sub-properties: immediately ventral to^op
is inverse of: dorsal to^op

vicinity of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000103

X medial to y if x is closer to the midsagittal plane than y.^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000115

has characteristics: transitive

is inverse of: lateral to^op

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni.

Biological Spatial Ontology

Abstract

Table of Content

Introduction

Classes

adaxial-abaxial axisc back to ToC or Class ToC

anatomical axisc back to ToC or Class ToC

anatomical boundaryc back to ToC or Class ToC

anatomical compartmentc back to ToC or Class ToC

anatomical compartment boundaryc back to ToC or Class ToC

anatomical entityc back to ToC or Class ToC

anatomical gradientc back to ToC or Class ToC

anatomical linec back to ToC or Class ToC

anatomical marginc back to ToC or Class ToC

anatomical planec back to ToC or Class ToC

anatomical regionc back to ToC or Class ToC

anatomical sidec back to ToC or Class ToC

anatomical surfacec back to ToC or Class ToC

animal-vegetal axisc back to ToC or Class ToC

anterior compartmentc back to ToC or Class ToC

anterior marginc back to ToC or Class ToC

anterior regionc back to ToC or Class ToC

anterior sidec back to ToC or Class ToC

anterior surfacec back to ToC or Class ToC

anterior-most regionc back to ToC or Class ToC

anterior-posterior axisc back to ToC or Class ToC

anterior-posterior gradientc back to ToC or Class ToC

anterior/posterior compartment boundaryc back to ToC or Class ToC

antero-dorsal marginc back to ToC or Class ToC

antero-dorsal regionc back to ToC or Class ToC

antero-lateral marginc back to ToC or Class ToC

antero-lateral regionc back to ToC or Class ToC

antero-medial marginc back to ToC or Class ToC

antero-medial regionc back to ToC or Class ToC

antero-ventral marginc back to ToC or Class ToC

antero-ventral regionc back to ToC or Class ToC

apical marginc back to ToC or Class ToC

apical regionc back to ToC or Class ToC

apical sidec back to ToC or Class ToC

apical surfacec back to ToC or Class ToC

apical-basal axis relative to direction of growthc back to ToC or Class ToC

apical-basal axis relative to substratec back to ToC or Class ToC

apical-basal gradientc back to ToC or Class ToC

apical/basal compartment boundaryc back to ToC or Class ToC

axial regionc back to ToC or Class ToC

axial sidec back to ToC or Class ToC

basal marginc back to ToC or Class ToC

basal regionc back to ToC or Class ToC

basal sidec back to ToC or Class ToC

basal surfacec back to ToC or Class ToC

biological entityc back to ToC or Class ToC

biological_processc back to ToC or Class ToC

catalytic activityc back to ToC or Class ToC

central regionc back to ToC or Class ToC

central sidec back to ToC or Class ToC

compartment boundaryc back to ToC or Class ToC

connected anatomical structurec back to ToC or Class ToC

continuantc back to ToC or Class ToC

contralateral regionc back to ToC or Class ToC

contralateral sidec back to ToC or Class ToC

contralateral surfacec back to ToC or Class ToC

curation status specificationc back to ToC or Class ToC

data about an ontology partc back to ToC or Class ToC

data itemc back to ToC or Class ToC

deep regionc back to ToC or Class ToC

deep sidec back to ToC or Class ToC

deep-superficial axisc back to ToC or Class ToC

deep-superficial gradientc back to ToC or Class ToC

deep-superficial gradient (obsolete)c back to ToC or Class ToC

deep/superficial compartment boundaryc back to ToC or Class ToC

denotator typec back to ToC or Class ToC

dispositionc back to ToC or Class ToC

distal marginc back to ToC or Class ToC

distal regionc back to ToC or Class ToC

distal sidec back to ToC or Class ToC

distal surfacec back to ToC or Class ToC

dorsal compartmentc back to ToC or Class ToC

dorsal marginc back to ToC or Class ToC

dorsal regionc back to ToC or Class ToC

dorsal sidec back to ToC or Class ToC

adaxial-abaxial axis^c back to ToC or Class ToC

anatomical axis^c back to ToC or Class ToC

anatomical boundary^c back to ToC or Class ToC

anatomical compartment^c back to ToC or Class ToC

anatomical compartment boundary^c back to ToC or Class ToC

anatomical entity^c back to ToC or Class ToC

anatomical gradient^c back to ToC or Class ToC

anatomical line^c back to ToC or Class ToC

anatomical margin^c back to ToC or Class ToC

anatomical plane^c back to ToC or Class ToC

anatomical region^c back to ToC or Class ToC

anatomical side^c back to ToC or Class ToC

anatomical surface^c back to ToC or Class ToC

animal-vegetal axis^c back to ToC or Class ToC

anterior compartment^c back to ToC or Class ToC

anterior margin^c back to ToC or Class ToC

anterior region^c back to ToC or Class ToC

anterior side^c back to ToC or Class ToC

anterior surface^c back to ToC or Class ToC

anterior-most region^c back to ToC or Class ToC

anterior-posterior axis^c back to ToC or Class ToC

anterior-posterior gradient^c back to ToC or Class ToC

anterior/posterior compartment boundary^c back to ToC or Class ToC

antero-dorsal margin^c back to ToC or Class ToC

antero-dorsal region^c back to ToC or Class ToC

antero-lateral margin^c back to ToC or Class ToC

antero-lateral region^c back to ToC or Class ToC

antero-medial margin^c back to ToC or Class ToC

antero-medial region^c back to ToC or Class ToC

antero-ventral margin^c back to ToC or Class ToC

antero-ventral region^c back to ToC or Class ToC

apical margin^c back to ToC or Class ToC

apical region^c back to ToC or Class ToC

apical side^c back to ToC or Class ToC

apical surface^c back to ToC or Class ToC

apical-basal axis relative to direction of growth^c back to ToC or Class ToC

apical-basal axis relative to substrate^c back to ToC or Class ToC

apical-basal gradient^c back to ToC or Class ToC

apical/basal compartment boundary^c back to ToC or Class ToC

axial region^c back to ToC or Class ToC

axial side^c back to ToC or Class ToC

basal margin^c back to ToC or Class ToC

basal region^c back to ToC or Class ToC

basal side^c back to ToC or Class ToC

basal surface^c back to ToC or Class ToC

biological entity^c back to ToC or Class ToC

biological_process^c back to ToC or Class ToC

catalytic activity^c back to ToC or Class ToC

central region^c back to ToC or Class ToC

central side^c back to ToC or Class ToC

compartment boundary^c back to ToC or Class ToC

connected anatomical structure^c back to ToC or Class ToC

continuant^c back to ToC or Class ToC

contralateral region^c back to ToC or Class ToC

contralateral side^c back to ToC or Class ToC

contralateral surface^c back to ToC or Class ToC

curation status specification^c back to ToC or Class ToC

data about an ontology part^c back to ToC or Class ToC

data item^c back to ToC or Class ToC

deep region^c back to ToC or Class ToC

deep side^c back to ToC or Class ToC

deep-superficial axis^c back to ToC or Class ToC

deep-superficial gradient^c back to ToC or Class ToC

deep-superficial gradient (obsolete)^c back to ToC or Class ToC

deep/superficial compartment boundary^c back to ToC or Class ToC

denotator type^c back to ToC or Class ToC

disposition^c back to ToC or Class ToC

distal margin^c back to ToC or Class ToC

distal region^c back to ToC or Class ToC

distal side^c back to ToC or Class ToC

distal surface^c back to ToC or Class ToC

dorsal compartment^c back to ToC or Class ToC

dorsal margin^c back to ToC or Class ToC

dorsal region^c back to ToC or Class ToC

dorsal side^c back to ToC or Class ToC

dorsal surface^c back to ToC or Class ToC

dorsal-most region^c back to ToC or Class ToC

dorsal-ventral axis^c back to ToC or Class ToC

dorsal-ventral gradient^c back to ToC or Class ToC

dorsal/ventral compartment boundary^c back to ToC or Class ToC