Biological Spatial Ontology

IRI:
http://purl.obolibrary.org/obo/bspo.owl
Version IRI:
http://purl.obolibrary.org/obo/bspo/releases/2022-06-28/bspo.owl
Current version :
2022-06-28
Other visualisation :
Ontology source - WebVowl

Abstract

based on FBql

Table of Content

  1. Introduction
  2. Classes
  3. Object Properties
  4. Named Individuals
  5. Annotation Properties
  6. General Axioms
  7. SWRL Rules
  8. Namespace Declarations

Introduction

An ontology for respresenting spatial concepts, anatomical axes, gradients, regions, planes, sides and surfaces. These concepts can be used at multiple biological scales and in a diversity of taxa, including plants, animals and fungi. The BSPO is used to provide a source of anatomical location descriptors for logically defining anatomical entity classes in anatomy ontologies.

Classes

adaxial-abaxial axisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000195

has super-classes
anatomical axisc

anatomical axisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000010

Axis directions are defined in terms of axes.
has super-classes
anatomical linec
passes throughop some anatomical entityc
has sub-classes
adaxial-abaxial axisc, animal-vegetal axisc, anterior-posterior axisc, apical-basal axis relative to direction of growthc, apical-basal axis relative to substratec, deep-superficial axisc, dorsal-ventral axisc, left-right axisc, medial-external axisc, oral-aboral axisc, proximal-distal axisc, sagittal planec, upper-lower axisc
is in domain of
approximately perpendicular toop, has end pointop, has start pointop, orthogonal toop, passes throughop
is in range of
approximately perpendicular toop, finishes axisop, follows axisop, starts axisop

anatomical boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CARO_0000010

has super-classes
immaterial anatomical entityc
has sub-classes
anatomical compartment boundaryc, anatomical planec, anatomical surfacec

anatomical compartmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000086

to be merged into CARO
has super-classes
connected anatomical structurec
has sub-classes
anterior compartmentc, compartment boundaryc, dorsal compartmentc, posterior compartmentc, ventral compartmentc

anatomical compartment boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000092

to be merged into CARO
has super-classes
anatomical boundaryc
has sub-classes
anterior/posterior compartment boundaryc, apical/basal compartment boundaryc, deep/superficial compartment boundaryc, dorsal/ventral compartment boundaryc, proximal/distal compartment boundaryc, upper/lower compartment boundaryc

anatomical entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CARO_0000000

has super-classes
biological entityc
has sub-classes
immaterial anatomical entityc, material anatomical entityc
is in range of
has end pointop, has start pointop

anatomical gradientc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000051

has super-classes
material anatomical entityc
has sub-classes
anterior-posterior gradientc, apical-basal gradientc, deep-superficial gradientc, dorsal-ventral gradientc, proximal-distal gradientc, upper-lower gradientc

anatomical linec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CARO_0000008

has super-classes
immaterial anatomical entityc
has sub-classes
anatomical axisc

anatomical marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000006

has super-classes
anatomical regionc
has sub-classes
anterior marginc, apical marginc, basal marginc, distal marginc, dorsal marginc, lateral marginc, medial marginc, posterior marginc, proximal marginc, ventral marginc

anatomical planec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000400

These anatomical sections are applicable to most bilaterally symmetrical animals, but bipedal animals such as humans have more complex usage of these terms. For example, in post-embryonic humans a coronal plane is vertical and a transverse plane is horizontal, but for embryos and quadrupeds a coronal plane is horizontal and a transverse plane is vertical.
has super-classes
anatomical boundaryc
has sub-classes
horizontal planec, radial planec, sagittal planec, tangential planec, transverse planec
is in range of
orthogonal toop

anatomical regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000070

to be merged into CARO
has super-classes
connected anatomical structurec
has sub-classes
anatomical marginc, anatomical sidec, anterior regionc, apical regionc, axial regionc, basal regionc, central regionc, contralateral regionc, deep regionc, distal regionc, dorsal regionc, ipsilateral regionc, lateral regionc, lower regionc, medial regionc, peripheral regionc, posterior regionc, proximal regionc, superficial regionc, upper regionc, ventral regionc

anatomical sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000054

has super-classes
anatomical regionc
has sub-classes
anterior sidec, apical sidec, axial sidec, basal sidec, central sidec, contralateral sidec, deep sidec, distal sidec, dorsal sidec, inferior sidec, ipsilateral sidec, lateral sidec, left sidec, lower sidec, medial sidec, peripheral sidec, posterior sidec, proximal sidec, right sidec, superficial sidec, superior sidec, upper sidec, ventral sidec
is in domain of
finishes axisop, starts axisop

anatomical surfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000005

to be merged into CARO
has super-classes
anatomical boundaryc
has sub-classes
anterior surfacec, apical surfacec, basal surfacec, contralateral surfacec, distal surfacec, dorsal surfacec, ipsilateral surfacec, lateral surfacec, medial surfacec, posterior surfacec, proximal surfacec, ventral surfacec
is in domain of
surface ofop

animal-vegetal axisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000199

has super-classes
anatomical axisc

anterior compartmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000087

has super-classes
anatomical compartmentc

anterior marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000671

is equivalent to
anatomical marginc and (overlapsop some anterior sidec)
has super-classes
anatomical marginc
anterior regionc
has sub-classes
antero-dorsal marginc, antero-lateral marginc, antero-medial marginc, antero-ventral marginc

anterior regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000071

is equivalent to
anatomical regionc and (overlapsop some anterior sidec)
has super-classes
anatomical regionc
overlapsop some anterior sidec
has sub-classes
anterior marginc, anterior-most regionc, antero-dorsal regionc, antero-lateral regionc, antero-medial regionc, antero-ventral regionc

anterior sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000055

has super-classes
anatomical sidec
anterior toop some posterior sidec
opposite toop some posterior sidec
starts axisop some anterior-posterior axisc

anterior surfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000371

is equivalent to
anatomical surfacec and (surface ofop some anterior sidec)
has super-classes
anatomical surfacec
surface ofop some anterior sidec

anterior-most regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000036

has super-classes
anterior regionc

anterior-posterior axisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000013

In sponges, AP is used to indicate the direction of movement [in larval stage] (as it is in other metazoans that move, e.g., the basal bilaterians). [PM]
is equivalent to
anatomical axisc and (orthogonal toop some transverse planec)
has super-classes
anatomical axisc
approximately perpendicular toop some dorsal-ventral axisc
orthogonal toop some transverse planec

anterior-posterior gradientc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000052

is equivalent to
anatomical gradientc and (has axisop some anterior-posterior axisc)
has super-classes
anatomical gradientc
has axisop some anterior-posterior axisc

anterior/posterior compartment boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000093

has super-classes
anatomical compartment boundaryc

antero-dorsal marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000686

is equivalent to
anatomical marginc and (overlapsop some anterior sidec) and (overlapsop some dorsal sidec)
has super-classes
antero-dorsal regionc
anterior marginc
dorsal marginc

antero-dorsal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000026

is equivalent to
anatomical regionc and (overlapsop some anterior sidec) and (overlapsop some dorsal sidec)
has super-classes
anterior regionc
dorsal regionc
has sub-classes
antero-dorsal marginc

antero-lateral marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000045

is equivalent to
anatomical marginc and (overlapsop some anterior sidec) and (overlapsop some lateral sidec)
has super-classes
antero-lateral regionc
anterior marginc
lateral marginc

antero-lateral regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000029

is equivalent to
anatomical regionc and (overlapsop some anterior sidec) and (overlapsop some lateral sidec)
has super-classes
anterior regionc
lateral regionc
has sub-classes
antero-lateral marginc

antero-medial marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000042

is equivalent to
anatomical marginc and (overlapsop some anterior sidec) and (overlapsop some medial sidec)
has super-classes
antero-medial regionc
anterior marginc
medial marginc

antero-medial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000050

is equivalent to
anatomical regionc and (overlapsop some anterior sidec) and (overlapsop some medial sidec)
has super-classes
anterior regionc
medial regionc
has sub-classes
antero-medial marginc

antero-ventral marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000688

is equivalent to
anatomical marginc and (overlapsop some anterior sidec) and (overlapsop some ventral sidec)
has super-classes
antero-ventral regionc
anterior marginc
ventral marginc

antero-ventral regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000027

is equivalent to
anatomical regionc and (overlapsop some anterior sidec) and (overlapsop some ventral sidec)
has super-classes
anterior regionc
ventral regionc
has sub-classes
antero-ventral marginc

apical marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000673

is equivalent to
anatomical marginc and (overlapsop some apical sidec)
has super-classes
anatomical marginc
apical regionc

apical regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000073

is equivalent to
anatomical regionc and (overlapsop some apical sidec)
has super-classes
anatomical regionc
overlapsop some apical sidec
has sub-classes
apical marginc

apical sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000057

has super-classes
anatomical sidec
opposite toop some basal sidec
starts axisop some apical-basal axis relative to substratec

apical surfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000373

is equivalent to
anatomical surfacec and (surface ofop some apical sidec)
has super-classes
anatomical surfacec
surface ofop some apical sidec

apical-basal axis relative to direction of growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000200

Plant structures that do not grow from an apical meristem, such as vascular leaves or petals, should be described using the proximal-distal axis. The proximal-distal axis may also be used for branches or lateral roots, and, in those cases, is concordant with the apical-basal axis.
has super-classes
anatomical axisc

apical-basal axis relative to substratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000014

has super-classes
anatomical axisc

apical-basal gradientc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000023

is equivalent to
anatomical gradientc and (follows axisop some apical-basal axis relative to substratec)
has super-classes
anatomical gradientc
follows axisop some apical-basal axis relative to substratec

apical/basal compartment boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000043

is equivalent to
anatomical compartment boundaryc and (has axisop some apical-basal axis relative to substratec)
has super-classes
anatomical compartment boundaryc
has axisop some apical-basal axis relative to substratec

axial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000128

is equivalent to
anatomical regionc and (overlapsop some axial sidec)
has super-classes
anatomical regionc
overlapsop some axial sidec

axial sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000130

has super-classes
anatomical sidec

basal marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000674

is equivalent to
anatomical marginc and (overlapsop some basal sidec)
has super-classes
anatomical marginc
basal regionc

basal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000074

is equivalent to
anatomical regionc and (overlapsop some basal sidec)
has super-classes
anatomical regionc
overlapsop some basal sidec
has sub-classes
basal marginc

basal sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000058

The part of the organism attached to a substrate. Axis of symmetry.
has super-classes
anatomical sidec
finishes axisop some apical-basal axis relative to substratec

basal surfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000374

is equivalent to
anatomical surfacec and (surface ofop some basal sidec)
has super-classes
anatomical surfacec
surface ofop some basal sidec

biological entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CARO_0030000

has super-classes
independent continuantc
has sub-classes
anatomical entityc

biological_processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0008150

has super-classes
processc

catalytic activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0003824

has super-classes
molecular_functionc
has sub-classes
transferase activityc

central regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000075

is equivalent to
anatomical regionc and (overlapsop some central sidec)
has super-classes
anatomical regionc
overlapsop some central sidec

central sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000059

central is not an axis direction
has super-classes
anatomical sidec

compartment boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000088

has super-classes
anatomical compartmentc

connected anatomical structurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CARO_0000003

has super-classes
material anatomical entityc
has sub-classes
anatomical compartmentc, anatomical regionc

continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000002

has super-classes
part ofop only continuantc
has sub-classes
independent continuantc, specifically dependent continuantc
is in domain of
causal relation between entitiesop, causally influencesop, participates inop
is in range of
causal relation between entitiesop, causally influencesop, has participantop
is disjoint with
occurrentc

contralateral regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000076

inherited from flybase cv. not clear how this would be used
is equivalent to
anatomical regionc and (overlapsop some contralateral sidec)
has super-classes
anatomical regionc
overlapsop some contralateral sidec

contralateral sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000060

inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation.
has super-classes
anatomical sidec

contralateral surfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000376

is equivalent to
anatomical surfacec and (surface ofop some contralateral sidec)
has super-classes
anatomical surfacec
surface ofop some contralateral sidec

curation status specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000078

is equivalent to
{ example to be eventually removed , metadata complete , organizational term , ready for release , metadata incomplete , uncurated , pending final vetting , to be replaced with external ontology term , requires discussion }
has super-classes
data about an ontology partc
has members
example to be eventually removedni, metadata completeni, metadata incompleteni, organizational termni, pending final vettingni, ready for releaseni, requires discussionni, to be replaced with external ontology termni, uncuratedni

data about an ontology partc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000102

has super-classes
data itemc
has sub-classes
curation status specificationc, denotator typec, obsolescence reason specificationc

data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000027

has super-classes
information content entityc
has sub-classes
data about an ontology partc

deep regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000033

is equivalent to
anatomical regionc and (overlapsop some deep sidec)
has super-classes
anatomical regionc
overlapsop some deep sidec

deep sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000003

has super-classes
anatomical sidec
deep toop some superficial sidec
starts axisop some deep-superficial axisc

deep-superficial axisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000012

Muscles are frequently categorized as 'deep', 'intermediate', and 'superficial'.
has super-classes
anatomical axisc

deep-superficial gradientc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000021

is equivalent to
anatomical gradientc and (follows axisop some deep-superficial axisc)
has super-classes
anatomical gradientc
follows axisop some deep-superficial axisc

deep-superficial gradient (obsolete)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_00000021

was made obsolete because the ID had too many digits

deep/superficial compartment boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000041

is equivalent to
anatomical compartment boundaryc and (has axisop some deep-superficial axisc)
has super-classes
anatomical compartment boundaryc
has axisop some deep-superficial axisc

denotator typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000409

is equivalent to
{ universal , defined class , named class expression }
has super-classes
data about an ontology partc
has members
defined classni, named class expressionni, universalni

dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000016

has super-classes
realizable entityc
has sub-classes
functionc
is in range of
has dispositionop
is disjoint with
rolec

distal marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000678

is equivalent to
anatomical marginc and (overlapsop some distal sidec)
has super-classes
anatomical marginc
distal regionc

distal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000078

is equivalent to
anatomical regionc and (overlapsop some distal sidec)
has super-classes
anatomical regionc
overlapsop some distal sidec
has sub-classes
distal marginc

distal sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000062

has super-classes
anatomical sidec
distal toop some proximal sidec
finishes axisop some proximal-distal axisc

distal surfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000378

is equivalent to
anatomical surfacec and (surface ofop some distal sidec)
has super-classes
anatomical surfacec
surface ofop some distal sidec

dorsal compartmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000089

has super-classes
anatomical compartmentc

dorsal marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000679

is equivalent to
anatomical marginc and (overlapsop some dorsal sidec)
has super-classes
anatomical marginc
dorsal regionc
has sub-classes
antero-dorsal marginc, dorso-lateral marginc, dorso-medial marginc, postero-dorsal marginc

dorsal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000079

is equivalent to
anatomical regionc and (overlapsop some dorsal sidec)
has super-classes
anatomical regionc
overlapsop some dorsal sidec
has sub-classes
antero-dorsal regionc, dorsal marginc, dorsal-most regionc, dorso-lateral regionc, dorso-medial regionc, postero-dorsal regionc

dorsal sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000063

has super-classes
anatomical sidec
dorsal toop some lateral sidec
opposite toop some ventral sidec
starts axisop some dorsal-ventral axisc

dorsal surfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000379

is equivalent to
anatomical surfacec and (surface ofop some dorsal sidec)
has super-classes
anatomical surfacec
surface ofop some dorsal sidec

dorsal-most regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000038

has super-classes
dorsal regionc

dorsal-ventral axisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000016

is equivalent to
anatomical axisc and (orthogonal toop some horizontal planec)
has super-classes
anatomical axisc
orthogonal toop some horizontal planec

dorsal-ventral gradientc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000053

is equivalent to
anatomical gradientc and (has axisop some dorsal-ventral axisc)
has super-classes
anatomical gradientc
has axisop some dorsal-ventral axisc

dorsal/ventral compartment boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000094

has super-classes
anatomical compartment boundaryc

dorso-lateral marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000680

is equivalent to
anatomical marginc and (overlapsop some dorsal sidec) and (overlapsop some lateral sidec)
has super-classes
dorso-lateral regionc
dorsal marginc
lateral marginc

dorso-lateral regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000080

is equivalent to
anatomical regionc and (overlapsop some dorsal sidec) and (overlapsop some lateral sidec)
has super-classes
dorsal regionc
lateral regionc
has sub-classes
dorso-lateral marginc

dorso-medial marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000048

is equivalent to
anatomical marginc and (overlapsop some dorsal sidec) and (overlapsop some medial sidec)
has super-classes
dorso-medial regionc
dorsal marginc
medial marginc

dorso-medial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000069

is equivalent to
anatomical regionc and (overlapsop some dorsal sidec) and (overlapsop some medial sidec)
has super-classes
dorsal regionc
medial regionc
has sub-classes
dorso-medial marginc

functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000034

has super-classes
dispositionc
is in domain of
function ofop
is in range of
has functionop

horizontal planec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000019

has super-classes
anatomical planec

immaterial anatomical entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CARO_0000007

has super-classes
immaterial entityc
anatomical entityc
has sub-classes
anatomical boundaryc, anatomical linec

immaterial entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000141

has super-classes
independent continuantc
has sub-classes
immaterial anatomical entityc
is disjoint with
material entityc

independent continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000004

has super-classes
continuantc
part ofop only independent continuantc
has sub-classes
biological entityc, immaterial entityc, material entityc
is in domain of
adjacent toop, capable ofop, has dispositionop, has functionop, has roleop
is in range of
adjacent toop
is disjoint with
specifically dependent continuantc

inferior sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000025

has super-classes
anatomical sidec

information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000030

has super-classes
b f o 0000031c
has sub-classes
data itemc

ipsilateral regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000081

is equivalent to
anatomical regionc and (overlapsop some ipsilateral sidec)
has super-classes
anatomical regionc
overlapsop some ipsilateral sidec

ipsilateral sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000065

inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation.
has super-classes
anatomical sidec

ipsilateral surfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000381

is equivalent to
anatomical surfacec and (surface ofop some ipsilateral sidec)
has super-classes
anatomical surfacec
surface ofop some ipsilateral sidec

kinase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0016301

has super-classes
transferase activity, transferring phosphorus-containing groupsc
is kinase activityop

lateral marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000682

is equivalent to
anatomical marginc and (overlapsop some lateral sidec)
has super-classes
anatomical marginc
lateral regionc
has sub-classes
antero-lateral marginc, dorso-lateral marginc, postero-lateral marginc, ventro-lateral marginc

lateral regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000082

is equivalent to
anatomical regionc and (overlapsop some lateral sidec)
has super-classes
anatomical regionc
overlapsop some lateral sidec
has sub-classes
antero-lateral regionc, dorso-lateral regionc, lateral marginc, postero-lateral regionc, ventro-lateral regionc

lateral sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000066

has super-classes
anatomical sidec

lateral surfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000382

is equivalent to
anatomical surfacec and (surface ofop some lateral sidec)
has super-classes
anatomical surfacec
surface ofop some lateral sidec

left sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000000

has super-classes
anatomical sidec
left ofop some right sidec
starts axisop some left-right axisc

left-right axisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000017

is equivalent to
anatomical axisc and (orthogonal toop some sagittal planec)
has super-classes
anatomical axisc
orthogonal toop some sagittal planec

lower regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000032

is equivalent to
anatomical regionc and (overlapsop some lower sidec)
has super-classes
anatomical regionc
overlapsop some lower sidec

lower sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000002

Consider merging with inferior side.
has super-classes
anatomical sidec
finishes axisop some upper-lower axisc

material anatomical entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CARO_0000006

has super-classes
material entityc
anatomical entityc
has sub-classes
anatomical gradientc, connected anatomical structurec

material entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000040

has super-classes
independent continuantc
has sub-classes
material anatomical entityc
is in domain of
causal relation between material entity and a processop, directly negatively regulates activity ofop, directly positively regulates activity ofop, directly regulates activity ofop, interacts withop, regulates activity ofop
is in range of
directly negatively regulates activity ofop, directly positively regulates activity ofop, directly regulates activity ofop, interacts withop, regulates activity ofop
is disjoint with
immaterial entityc

medial marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000683

is equivalent to
anatomical marginc and (overlapsop some medial sidec)
has super-classes
anatomical marginc
medial regionc
has sub-classes
antero-medial marginc, dorso-medial marginc, postero-medial marginc, ventro-medial marginc

medial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000083

is equivalent to
anatomical regionc and (overlapsop some medial sidec)
has super-classes
anatomical regionc
overlapsop some medial sidec
has sub-classes
antero-medial regionc, dorso-medial regionc, medial marginc, postero-medial regionc, ventro-medial regionc

medial sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000067

a point in the centre of the organism (where the left-right axis intersects the midsagittal plane)
has super-classes
anatomical sidec

medial surfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000383

is equivalent to
anatomical surfacec and (surface ofop some medial sidec)
has super-classes
anatomical surfacec
surface ofop some medial sidec

medial-external axisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000196

The medial-external axis could apply to a sphere-shaped body.
has super-classes
anatomical axisc
has sub-classes
medial-lateral axisc, medial-radial axisc

medial-lateral axisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0001001

Properly, the ML axis is a half axis; practically, its usage is less clumsy and less linguistically biased than "left-right". The terms may still be used relatively to describe locations along the LR axis. The gills are medial to the operculum, but lateral to the heart.
has super-classes
medial-external axisc

medial-radial axisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000197

In plants, lateral growth (http://purl.obolibrary.org/obo/GO_0080190) run is along the medial/radial axis (from medial to radial) [RW]. Also applies to radially symmetrical animals such as sea urchins, cnidarians [PM] or applies to more-or-less cylindrical body parts in animals, like limbs.
has super-classes
medial-external axisc

midsagittal planec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000009

only in bilaterally symmetrical organisms
has super-classes
sagittal planec

molecular_functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0003674

has super-classes
processc
has sub-classes
catalytic activityc

obsolescence reason specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000225

is equivalent to
{ failed exploratory term , placeholder removed , terms merged , term imported , term split }
has super-classes
data about an ontology partc
has members
failed exploratory termni, placeholder removedni, term importedni, term splitni, terms mergedni

occurrentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000003

has super-classes
part ofop only occurrentc
has sub-classes
processc
is in domain of
causal relation between processesop, has participantop, preceded byop, precedesop, temporally related toop
is in range of
causal relation between processesop, participates inop, preceded byop, precedesop, temporally related toop
is disjoint with
continuantc

oral-aboral axisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000198

has super-classes
anatomical axisc

parasagittal planec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000008

has super-classes
sagittal planec

peripheral regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000127

is equivalent to
anatomical regionc and (overlapsop some peripheral sidec)
has super-classes
anatomical regionc
overlapsop some peripheral sidec

peripheral sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000129

has super-classes
anatomical sidec

posterior compartmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000090

has super-classes
anatomical compartmentc

posterior marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000672

is equivalent to
anatomical marginc and (overlapsop some posterior sidec)
has super-classes
anatomical marginc
posterior regionc
has sub-classes
postero-dorsal marginc, postero-lateral marginc, postero-medial marginc, postero-ventral marginc

posterior regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000072

is equivalent to
anatomical regionc and (overlapsop some posterior sidec)
has super-classes
anatomical regionc
overlapsop some posterior sidec
has sub-classes
posterior marginc, posterior-most regionc, postero-dorsal regionc, postero-lateral regionc, postero-medial regionc, postero-ventral regionc

posterior sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000056

has super-classes
anatomical sidec
posterior toop some anterior sidec
finishes axisop some anterior-posterior axisc

posterior surfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000372

is equivalent to
anatomical surfacec and (surface ofop some posterior sidec)
has super-classes
anatomical surfacec
surface ofop some posterior sidec

posterior-most regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000037

has super-classes
posterior regionc

postero-dorsal marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000687

is equivalent to
anatomical marginc and (overlapsop some posterior sidec) and (overlapsop some dorsal sidec)
has super-classes
postero-dorsal regionc
posterior marginc
dorsal marginc

postero-dorsal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000030

is equivalent to
anatomical regionc and (overlapsop some posterior sidec) and (overlapsop some dorsal sidec)
has super-classes
posterior regionc
dorsal regionc
has sub-classes
postero-dorsal marginc

postero-lateral marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000047

is equivalent to
anatomical marginc and (overlapsop some posterior sidec) and (overlapsop some lateral sidec)
has super-classes
postero-lateral regionc
posterior marginc
lateral marginc

postero-lateral regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000028

is equivalent to
anatomical regionc and (overlapsop some posterior sidec) and (overlapsop some lateral sidec)
has super-classes
posterior regionc
lateral regionc
has sub-classes
postero-lateral marginc

postero-medial marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000046

is equivalent to
anatomical marginc and (overlapsop some posterior sidec) and (overlapsop some medial sidec)
has super-classes
postero-medial regionc
posterior marginc
medial marginc

postero-medial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000064

is equivalent to
anatomical regionc and (overlapsop some posterior sidec) and (overlapsop some medial sidec)
has super-classes
posterior regionc
medial regionc
has sub-classes
postero-medial marginc

postero-ventral marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000689

is equivalent to
anatomical marginc and (overlapsop some posterior sidec) and (overlapsop some ventral sidec)
has super-classes
postero-ventral regionc
posterior marginc
ventral marginc

postero-ventral regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000035

is equivalent to
anatomical regionc and (overlapsop some posterior sidec) and (overlapsop some ventral sidec)
has super-classes
posterior regionc
ventral regionc
has sub-classes
postero-ventral marginc

processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000015

has super-classes
occurrentc
has sub-classes
biological_processc, molecular_functionc
is in domain of
has component processop, has inputop, regulated byop, regulatesop, regulates characteristicop
is in range of
capable ofop, causal relation between material entity and a processop, has component processop, regulated byop, regulatesop

proximal marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000677

is equivalent to
anatomical marginc and (overlapsop some proximal sidec)
has super-classes
anatomical marginc
proximal regionc

proximal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000077

is equivalent to
anatomical regionc and (overlapsop some proximal sidec)
has super-classes
anatomical regionc
overlapsop some proximal sidec
has sub-classes
proximal marginc

proximal sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000061

has super-classes
anatomical sidec
opposite toop some distal sidec
starts axisop some proximal-distal axisc

proximal surfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000377

is equivalent to
anatomical surfacec and (surface ofop some proximal sidec)
has super-classes
anatomical surfacec
surface ofop some proximal sidec

proximal-distal axisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000015

In some communities, proximal and distal are used when specifying the position of parts of elements that are contained within the body, such as gill arches or vertebral spines. In these cases, use of the classes medial-lateral axis or medial-external axis are more appropriate.
has super-classes
anatomical axisc

proximal-distal gradientc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000024

is equivalent to
anatomical gradientc and (follows axisop some proximal-distal axisc)
has super-classes
anatomical gradientc
follows axisop some proximal-distal axisc

proximal/distal compartment boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000044

is equivalent to
anatomical compartment boundaryc and (has axisop some proximal-distal axisc)
has super-classes
anatomical compartment boundaryc
has axisop some proximal-distal axisc

qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000019

has super-classes
specifically dependent continuantc
part ofop only qualityc
is in range of
has qualityop
is disjoint with
realizable entityc

qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000001

has super-classes
specifically dependent continuantc
is in range of
regulates characteristicop

radial planec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000202

Need to add logical definitions.
has super-classes
anatomical planec

realizable entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000017

has super-classes
specifically dependent continuantc
part ofop only realizable entityc
has sub-classes
dispositionc, rolec
is disjoint with
qualityc

right sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000007

has super-classes
anatomical sidec
finishes axisop some left-right axisc

rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000023

has super-classes
realizable entityc
is in range of
has roleop
is disjoint with
dispositionc

sagittal planec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000417

is equivalent to
anatomical planec and (orthogonal toop some left-right axisc) and (parallel toop some anterior-posterior axisc) and (parallel toop some dorsal-ventral axisc)
has super-classes
anatomical axisc
anatomical planec
orthogonal toop some left-right axisc
parallel toop some anterior-posterior axisc
parallel toop some dorsal-ventral axisc
has sub-classes
midsagittal planec, parasagittal planec

specifically dependent continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000020

has super-classes
continuantc
part ofop only specifically dependent continuantc
has sub-classes
qualityc, qualityc, realizable entityc
is in range of
has characteristicop
is disjoint with
independent continuantc

superficial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000034

is equivalent to
anatomical regionc and (overlapsop some superficial sidec)
has super-classes
anatomical regionc
overlapsop some superficial sidec

superficial sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000004

has super-classes
anatomical sidec
finishes axisop some deep-superficial axisc

superior sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000022

has super-classes
anatomical sidec

tangential planec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000201

Need to add logical definitions.
has super-classes
anatomical planec

transferase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0016740

has super-classes
catalytic activityc
has sub-classes
transferase activity, transferring phosphorus-containing groupsc

transferase activity, transferring phosphorus-containing groupsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0016772

has super-classes
transferase activityc
has sub-classes
kinase activityc

transverse planec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000018

has super-classes
anatomical planec

upper regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000031

is equivalent to
anatomical regionc and (overlapsop some upper sidec)
has super-classes
anatomical regionc
overlapsop some upper sidec

upper sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000001

Consider merging with superior side.
has super-classes
anatomical sidec
starts axisop some upper-lower axisc

upper-lower axisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000011

has super-classes
anatomical axisc

upper-lower gradientc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000020

is equivalent to
anatomical gradientc and (follows axisop some upper-lower axisc)
has super-classes
anatomical gradientc
follows axisop some upper-lower axisc

upper/lower compartment boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000040

is equivalent to
anatomical compartment boundaryc and (has axisop some upper-lower axisc)
has super-classes
anatomical compartment boundaryc
has axisop some upper-lower axisc

ventral compartmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000091

has super-classes
anatomical compartmentc

ventral marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000684

is equivalent to
anatomical marginc and (overlapsop some ventral sidec)
has super-classes
anatomical marginc
ventral regionc
has sub-classes
antero-ventral marginc, postero-ventral marginc, ventro-lateral marginc, ventro-medial marginc

ventral regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000084

is equivalent to
anatomical regionc and (overlapsop some ventral sidec)
has super-classes
anatomical regionc
overlapsop some ventral sidec
has sub-classes
antero-ventral regionc, postero-ventral regionc, ventral marginc, ventral-most regionc, ventro-lateral regionc, ventro-medial regionc

ventral sidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000068

has super-classes
anatomical sidec
finishes axisop some dorsal-ventral axisc

ventral surfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000384

is equivalent to
anatomical surfacec and (surface ofop some ventral sidec)
has super-classes
anatomical surfacec
surface ofop some ventral sidec

ventral-most regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000039

has super-classes
ventral regionc

ventro-lateral marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000685

This is an example of a composition of two axis positions
is equivalent to
anatomical marginc and (overlapsop some lateral sidec) and (overlapsop some ventral sidec)
has super-classes
ventro-lateral regionc
lateral marginc
ventral marginc

ventro-lateral regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000085

This is an example of a composition of two axis positions.
is equivalent to
anatomical regionc and (overlapsop some lateral sidec) and (overlapsop some ventral sidec)
has super-classes
lateral regionc
ventral regionc
has sub-classes
ventro-lateral marginc

ventro-medial marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000049

is equivalent to
anatomical marginc and (overlapsop some medial sidec) and (overlapsop some ventral sidec)
has super-classes
ventro-medial regionc
medial marginc
ventral marginc

ventro-medial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000112

is equivalent to
anatomical regionc and (overlapsop some medial sidec) and (overlapsop some ventral sidec)
has super-classes
medial regionc
ventral regionc
has sub-classes
ventro-medial marginc

Object Properties

aboral toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015202

acts upstream ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002263

has super-properties
acts upstream of or withinop
has sub-properties
acts upstream of, negative effectop, acts upstream of, positive effectop, involved in regulation ofop
has sub-property chains
enablesop o causally upstream ofop

acts upstream of or withinop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002264

has super-properties
causal agent in processop
has sub-properties
acts upstream ofop, acts upstream of or within, negative effectop, acts upstream of or within, positive effectop, involved in or involved in regulation ofop
has sub-property chains
enablesop o causally upstream of or withinop

acts upstream of or within, negative effectop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004033

has super-properties
acts upstream of or withinop
has sub-properties
acts upstream of, negative effectop
has sub-property chains
enablesop o causally upstream of or within, negative effectop

acts upstream of or within, positive effectop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004032

has super-properties
acts upstream of or withinop
has sub-properties
acts upstream of, positive effectop
has sub-property chains
enablesop o causally upstream of or within, positive effectop

acts upstream of, negative effectop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004035

has super-properties
acts upstream ofop
acts upstream of or within, negative effectop
has sub-property chains
enablesop o causally upstream of, negative effectop

acts upstream of, positive effectop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004034

has super-properties
acts upstream ofop
acts upstream of or within, positive effectop
has sub-property chains
enablesop o causally upstream of, positive effectop

adjacent toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002220

has characteristics : symmetric

has super-properties
spatially disjoint fromop
has sub-properties
immediately posterior toop, immediately superficial toop
has domain
independent continuantc
has range
independent continuantc

anatomical relationop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000095

anterior toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000096

has characteristics : transitive

has sub-properties
immediately anterior toop
is inverse of
posterior toop

approximately perpendicular toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000104

has domain
anatomical axisc
has range
anatomical axisc

capable ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002215

has super-properties
capable of part ofop
has sub-properties
enablesop
has domain
independent continuantc
has range
processc

capable of negatively regulatingop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002597

has super-properties
capable of regulatingop
has sub-property chains
capable ofop o negatively regulatesop

capable of part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002216

has super-properties
functionally related toop
causal agent in processop
has sub-properties
capable ofop
has sub-property chains
capable ofop o part ofop

capable of positively regulatingop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002598

has super-properties
capable of regulatingop
has sub-property chains
capable ofop o positively regulatesop

capable of regulatingop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002596

has super-properties
causal agent in processop
has sub-properties
capable of negatively regulatingop, capable of positively regulatingop
has sub-property chains
capable ofop o regulatesop

causal agent in processop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002500

has super-properties
causal relation between material entity and a processop
has sub-properties
acts upstream of or withinop, capable of part ofop, capable of regulatingop, involved in or involved in regulation ofop
is inverse of
process has causal agentop

causal relation between entitiesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002506

has super-properties
causally related toop
has sub-properties
causally influenced byop, causally influencesop
has domain
continuantc
has range
continuantc

causal relation between material entity and a processop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002595

has super-properties
causally related toop
has sub-properties
causal agent in processop, has part structure that is capable ofop
has domain
material entityc
has range
processc

causal relation between processesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002501

has super-properties
causally related toop
has sub-properties
causally downstream of or withinop, causally upstream of or withinop
has domain
occurrentc
has range
occurrentc

causally downstream ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002404

has super-properties
preceded byop
causally downstream of or withinop
has sub-properties
immediately causally downstream ofop
is inverse of
causally upstream ofop

causally downstream of or withinop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002427

has characteristics : transitive

has super-properties
causal relation between processesop
has sub-properties
causally downstream ofop, regulated byop
is inverse of
causally upstream of or withinop

causally influenced byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002559

has super-properties
causal relation between entitiesop
is inverse of
causally influencesop

causally influencesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002566

has super-properties
causal relation between entitiesop
has sub-properties
regulates activity ofop
has domain
continuantc
has range
continuantc
is inverse of
causally influenced byop
has sub-property chains
enablesop o causally upstream ofop o has inputop
enablesop o causally upstream ofop o enabled byop

causally related toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002410

has sub-properties
causal relation between entitiesop, causal relation between material entity and a processop, causal relation between processesop, process has causal agentop, regulates characteristicop

causally upstream ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002411

has characteristics : transitive

has super-properties
precedesop
causally upstream of or withinop
has sub-properties
causally upstream of, negative effectop, causally upstream of, positive effectop, immediately causally upstream ofop, regulatesop
is inverse of
causally downstream ofop

causally upstream of or withinop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002418

has characteristics : transitive

has super-properties
causal relation between processesop
has sub-properties
causally upstream ofop, causally upstream of or within, negative effectop, causally upstream of or within, positive effectop
is inverse of
causally downstream of or withinop

causally upstream of or within, negative effectop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004046

has super-properties
causally upstream of or withinop
has sub-properties
causally upstream of, negative effectop

causally upstream of or within, positive effectop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004047

has super-properties
causally upstream of or withinop
has sub-properties
causally upstream of, positive effectop

causally upstream of, negative effectop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002305

holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y
has super-properties
causally upstream ofop
causally upstream of or within, negative effectop
has sub-properties
negatively regulatesop

causally upstream of, positive effectop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002304

holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y
has super-properties
causally upstream ofop
causally upstream of or within, positive effectop
has sub-properties
positively regulatesop

characteristic ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000052

Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.

has characteristics : functional

has super-properties
characteristic of part ofop
has sub-properties
disposition ofop, function ofop, quality ofop, role ofop
is inverse of
has characteristicop

characteristic of part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002314

has super-properties
depends onop
has sub-properties
characteristic ofop
has sub-property chains
characteristic ofop o part ofop
characteristic of part ofop o part ofop

contralateral toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000106

has characteristics : symmetric

has super-properties
opposite toop

deep toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000107

has characteristics : transitive

has sub-properties
immediately deep toop
is inverse of
superficial toop

depends onop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002502

has sub-properties
characteristic of part ofop

device utilizes materialop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0017001

has sub-property chains
capable ofop o has inputop

directly negatively regulated byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002023

has super-properties
directly regulated byop
is inverse of
directly negatively regulatesop

directly negatively regulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002630

has super-properties
negatively regulatesop
directly regulatesop
is inverse of
directly negatively regulated byop

directly negatively regulates activity ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002449

has super-properties
directly regulates activity ofop
has domain
material entityc
has range
material entityc
has sub-property chains
enablesop o directly negatively regulatesop o enabled byop

directly positively regulated byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002024

has super-properties
directly regulated byop
is inverse of
directly positively regulatesop

directly positively regulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002629

has super-properties
positively regulatesop
directly regulatesop
is inverse of
directly positively regulated byop

directly positively regulates activity ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002450

has super-properties
directly regulates activity ofop
has domain
material entityc
has range
material entityc
has sub-property chains
enablesop o directly positively regulatesop o enabled byop

directly regulated byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002022

Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
has super-properties
regulated byop
has sub-properties
directly negatively regulated byop, directly positively regulated byop
is inverse of
directly regulatesop

directly regulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002578

has super-properties
regulatesop
immediately causally upstream ofop
has sub-properties
directly negatively regulatesop, directly positively regulatesop
is inverse of
directly regulated byop

directly regulates activity ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002448

has super-properties
molecularly interacts withop
regulates activity ofop
has sub-properties
directly negatively regulates activity ofop, directly positively regulates activity ofop
has domain
material entityc
has range
material entityc
has sub-property chains
enablesop o regulatesop o enabled byop

disposition ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000092

This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
has super-properties
characteristic ofop
is inverse of
has dispositionop

distal toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000097

has characteristics : transitive

has sub-properties
immediately distal toop
is inverse of
proximal toop

distalmost part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0001108

has super-properties
in distal side ofop

dorsal toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000098

has characteristics : transitive

has sub-properties
immediately dorsal toop
is inverse of
ventral toop

enabled byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002333

has super-properties
has participantop
functionally related toop
is inverse of
enablesop

enablesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002327

has super-properties
capable ofop
is inverse of
enabled byop
has sub-property chains
enablesop o has partop
enablesop o has component activityop

enables subfunctionop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004031

has super-properties
functionally related toop
has sub-property chains
enablesop o has partop

ends afterop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002086

X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)

has characteristics : transitive

has super-properties
temporally related toop
has sub-properties
preceded byop

finishes axisop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015001

A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. If s finishes axis x, and x has end point p, then x overlaps p
has domain
anatomical sidec
has range
anatomical axisc

follows axisop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015002

has range
anatomical axisc

function ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000079

This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
has super-properties
characteristic ofop
has domain
functionc
is inverse of
has functionop

functionally related toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002328

has sub-properties
capable of part ofop, enabled byop, enables subfunctionop, has part structure that is capable ofop, input ofop, involved in or involved in regulation ofop, part of structure that is capable ofop

has axisop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015003

has characteristicop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000053

has characteristics : inverse functional

has sub-properties
has dispositionop, has functionop, has qualityop, has roleop
has range
specifically dependent continuantc
is inverse of
characteristic ofop

has componentop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002180

has super-properties
has partop
has sub-properties
has component processop

has component activityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002017

A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B.
has super-properties
has component processop
has sub-properties
has effector activityop, has regulatory component activityop

has component processop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002018

has super-properties
has componentop
has sub-properties
has component activityop
has domain
processc
has range
processc

has dispositionop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000091

has super-properties
has characteristicop
has domain
independent continuantc
has range
dispositionc
is inverse of
disposition ofop

has effector activityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002025

This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations.

has characteristics : functional

has super-properties
has component activityop

has end pointop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015004

Axes can be defined in a given species by subtyping the relevant axis type and stating a end and end point
has domain
anatomical axisc
has range
anatomical entityc

has functionop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000085

has super-properties
has characteristicop
has domain
independent continuantc
has range
functionc
is inverse of
function ofop

has inputop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002233

has super-properties
has participantop
has domain
processc
is inverse of
input ofop

has negative regulatory component activityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002014

By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'.
has super-properties
has regulatory component activityop
negatively regulated byop

has partop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000051

has characteristics : transitive

has super-properties
overlapsop
has sub-properties
has componentop
is inverse of
part ofop

has part structure that is capable ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002584

has super-properties
functionally related toop
causal relation between material entity and a processop
has sub-property chains
has partop o capable ofop

has participantop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000057

has sub-properties
enabled byop, has inputop
has domain
occurrentc
has range
continuantc
is inverse of
participates inop
has sub-property chains
has partop o has participantop

has positive regulatory component activityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002015

By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'.
has super-properties
has regulatory component activityop
positively regulated byop

has qualityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000086

has super-properties
has characteristicop
has range
qualityc
is inverse of
quality ofop

has regulatory component activityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002013

has super-properties
has component activityop
regulated byop
has sub-properties
has negative regulatory component activityop, has positive regulatory component activityop

has roleop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000087

has super-properties
has characteristicop
has domain
independent continuantc
has range
rolec
is inverse of
role ofop

has start pointop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0020002

Axes can be defined in a given species by subtyping the relevant axis type and stating a start and end point.
has domain
anatomical axisc
has range
anatomical entityc

helper property (not for use in curation)op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002464

has sub-properties
interaction relation helper propertyop

immediately anterior toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015009

has super-properties
anterior toop
is inverse of
immediately posterior toop

immediately causally downstream ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002405

has super-properties
immediately preceded byop
causally downstream ofop
is inverse of
immediately causally upstream ofop

immediately causally upstream ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002412

has super-properties
immediately precedesop
causally upstream ofop
has sub-properties
directly regulatesop
is inverse of
immediately causally downstream ofop

immediately deep toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0001107

has super-properties
deep toop
is inverse of
immediately superficial toop

immediately distal toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015010

has super-properties
distal toop
is inverse of
immediately proximal toop

immediately dorsal toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015011

has super-properties
dorsal toop
is inverse of
immediately ventral toop

immediately left ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015016

has super-properties
left ofop
is inverse of
immediately right ofop

immediately posterior toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015012

has super-properties
posterior toop
adjacent toop
is inverse of
immediately anterior toop

immediately preceded byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002087

X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)
has super-properties
preceded byop
has sub-properties
immediately causally downstream ofop
is inverse of
immediately precedesop

immediately precedesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002090

X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)
has super-properties
precedesop
has sub-properties
immediately causally upstream ofop
is inverse of
immediately preceded byop

immediately proximal toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015013

has super-properties
proximal toop
is inverse of
immediately distal toop

immediately right ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015017

has super-properties
right ofop
is inverse of
immediately left ofop

immediately superficial toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015014

has super-properties
superficial toop
adjacent toop
is inverse of
immediately deep toop

immediately ventral toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015015

has super-properties
ventral toop
is inverse of
immediately dorsal toop

in anterior side ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000123

has super-properties
part ofop

in central side ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0020001

has super-properties
part ofop

in deep part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0001101

has super-properties
part ofop

in distal side ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000125

has super-properties
part ofop
has sub-properties
distalmost part ofop

in dorsal side ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015101

has super-properties
part ofop

in lateral side ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000126

has super-properties
part ofop
has sub-properties
in left side ofop, in right side ofop

in left side ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000120

has super-properties
in lateral side ofop

in posterior side ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000122

has super-properties
part ofop

in proximal side ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000124

has super-properties
part ofop
has sub-properties
proximalmost part ofop

in right side ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000121

has super-properties
in lateral side ofop

in superficial part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0001100

has super-properties
part ofop

in ventral side ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015102

has super-properties
part ofop

input ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002352

has super-properties
participates inop
functionally related toop
is inverse of
has inputop

interaction relation helper propertyop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002563

has super-properties
helper property (not for use in curation)op
has sub-properties
molecular interaction relation helper propertyop

interacts withop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002434

has characteristics : symmetric

has sub-properties
molecularly interacts withop
has domain
material entityc
has range
material entityc

intersects midsagittal plane ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0005001

has super-properties
part ofop

involved inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002331

has super-properties
participates inop
involved in or involved in regulation ofop
has sub-property chains
enablesop o part ofop
involved inop o part ofop

involved in negative regulation ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002430

has super-properties
involved in regulation ofop
has sub-property chains
enablesop o negatively regulatesop
involved inop o negatively regulatesop

involved in or involved in regulation ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002431

has super-properties
acts upstream of or withinop
functionally related toop
causal agent in processop
has sub-properties
involved inop, involved in regulation ofop

involved in positive regulation ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002429

has super-properties
involved in regulation ofop
has sub-property chains
enablesop o positively regulatesop
involved inop o positively regulatesop

involved in regulation ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002428

has super-properties
acts upstream ofop
involved in or involved in regulation ofop
has sub-properties
involved in negative regulation ofop, involved in positive regulation ofop
has sub-property chains
enablesop o regulatesop
involved inop o regulatesop

ipsilateral toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000105

is kinase activityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002481

has super-properties
molecular interaction relation helper propertyop

lateral toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000114

has characteristics : transitive

is inverse of
X medial to y if x is closer to the midsagittal plane than y.op

left ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000110

has characteristics : transitive

has sub-properties
immediately left ofop
is inverse of
right ofop

mereotopologically related toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002323

has sub-properties
overlapsop, spatially disjoint fromop

molecular interaction relation helper propertyop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002564

has super-properties
interaction relation helper propertyop
has sub-properties
is kinase activityop

molecularly interacts withop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002436

has characteristics : symmetric

has super-properties
interacts withop
has sub-properties
directly regulates activity ofop, phosphorylatesop

negatively regulated byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002335

has super-properties
regulated byop
has sub-properties
has negative regulatory component activityop
is inverse of
negatively regulatesop

negatively regulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002212

has super-properties
regulatesop
causally upstream of, negative effectop
has sub-properties
directly negatively regulatesop
is inverse of
negatively regulated byop

negatively regulates characteristicop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0019002

has super-properties
regulates characteristicop
has sub-property chains
negatively regulatesop o positively regulates characteristicop
positively regulatesop o negatively regulates characteristicop

obsolete surrounded_byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000109

obsolete surroundsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000101

opposite toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000113

has sub-properties
contralateral toop

oral toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015201

orthogonal toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015005

has domain
anatomical axisc
has range
anatomical planec

overlapsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002131

"(forall (x y) (iff (overlaps x y) (exists (z) (and (part of z x) (part of z y)))))" CLIF []

has characteristics : symmetric

has super-properties
mereotopologically related toop
has sub-properties
has partop, part ofop
has sub-property chains
part ofop o part ofop
has partop o part ofop
has partop o overlapsop
overlapsop o part ofop

parallel toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/bspo#parallel_to

part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000050

has characteristics : transitive

has super-properties
overlapsop
has sub-properties
in anterior side ofop, in central side ofop, in deep part ofop, in distal side ofop, in dorsal side ofop, in lateral side ofop, in posterior side ofop, in proximal side ofop, in superficial part ofop, in ventral side ofop, intersects midsagittal plane ofop, postaxialmost part ofop, preaxialmost part ofop
is inverse of
has partop

part of structure that is capable ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002329

has super-properties
functionally related toop
has sub-property chains
part ofop o capable ofop

participates inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000056

has sub-properties
input ofop, involved inop
has domain
continuantc
has range
occurrentc
is inverse of
has participantop

passes throughop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015006

has domain
anatomical axisc

phosphorylatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002447

has super-properties
molecularly interacts withop

positively regulated byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002336

has super-properties
regulated byop
has sub-properties
has positive regulatory component activityop
is inverse of
positively regulatesop

positively regulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002213

has characteristics : transitive

has super-properties
regulatesop
causally upstream of, positive effectop
has sub-properties
directly positively regulatesop
is inverse of
positively regulated byop
has sub-property chains
negatively regulatesop o negatively regulatesop

positively regulates characteristicop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0019001

has super-properties
regulates characteristicop
has sub-property chains
positively regulatesop o positively regulates characteristicop

postaxial toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0001114

postaxialmost part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0001115

has super-properties
part ofop

posterior toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000099

has characteristics : transitive

has sub-properties
immediately posterior toop
is inverse of
anterior toop

preaxial toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_1000000

preaxialmost part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0001113

has super-properties
part ofop

preceded byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000062

has characteristics : transitive

has super-properties
ends afterop
has sub-properties
causally downstream ofop, immediately preceded byop
has domain
occurrentc
has range
occurrentc
is inverse of
precedesop
has sub-property chains
part ofop o preceded byop

precedesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000063

has characteristics : transitive

has super-properties
temporally related toop
has sub-properties
causally upstream ofop, immediately precedesop
has domain
occurrentc
has range
occurrentc
is inverse of
preceded byop
has sub-property chains
part ofop o precedesop

process has causal agentop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002608

has super-properties
causally related toop
is inverse of
causal agent in processop

proximal toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000100

The elbow is proximal to the hand, but distal to the shoulder.

has characteristics : transitive

has sub-properties
immediately proximal toop
is inverse of
distal toop

proximalmost part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0001106

has super-properties
in proximal side ofop

quality ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000080

This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
has super-properties
characteristic ofop
is inverse of
has qualityop

regulated byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002334

has characteristics : transitive

has super-properties
causally downstream of or withinop
has sub-properties
directly regulated byop, has regulatory component activityop, negatively regulated byop, positively regulated byop
has domain
processc
has range
processc
is inverse of
regulatesop

regulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002211

has characteristics : transitive

has super-properties
causally upstream ofop
has sub-properties
directly regulatesop, negatively regulatesop, positively regulatesop
has domain
processc
has range
processc
is inverse of
regulated byop
has sub-property chains
regulatesop o has effector activityop
directly regulatesop o directly regulatesop

regulates activity ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0011002

has super-properties
causally influencesop
has sub-properties
directly regulates activity ofop
has domain
material entityc
has range
material entityc

regulates characteristicop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0019000

has super-properties
causally related toop
has sub-properties
negatively regulates characteristicop, positively regulates characteristicop
has domain
processc
has range
qualityc
has sub-property chains
regulatesop o regulates characteristicop

right ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000111

has characteristics : transitive

has sub-properties
immediately right ofop
is inverse of
left ofop

role ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000081

This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
has super-properties
characteristic ofop
is inverse of
has roleop

spatially disjoint fromop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002163

has super-properties
mereotopologically related toop
has sub-properties
adjacent toop

starts axisop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015007

A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. . If s starts axis x, and x has start point p, then x overlaps p
has domain
anatomical sidec
has range
anatomical axisc

superficial toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000108

has characteristics : transitive

has sub-properties
immediately superficial toop
is inverse of
deep toop

surface ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0015008

placeholder. used for relation between anatomical surface and an anatomical side.
has domain
anatomical surfacec

temporally related toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002222

A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations.
has sub-properties
ends afterop, precedesop
has domain
occurrentc
has range
occurrentc

ventral toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000102

has characteristics : transitive

has sub-properties
immediately ventral toop
is inverse of
dorsal toop

vicinity ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000103

X medial to y if x is closer to the midsagittal plane than y.op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BSPO_0000115

has characteristics : transitive

is inverse of
lateral toop

Named Individuals

defined classni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000420

belongs to
denotator typec

example to be eventually removedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000002

belongs to
curation status specificationc

failed exploratory termni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000103

belongs to
obsolescence reason specificationc

metadata completeni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000120

belongs to
curation status specificationc

metadata incompleteni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000123

belongs to
curation status specificationc

named class expressionni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000421

belongs to
denotator typec

organizational termni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000121

belongs to
curation status specificationc

pending final vettingni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000125

belongs to
curation status specificationc

placeholder removedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000226

belongs to
obsolescence reason specificationc

ready for releaseni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000122

belongs to
curation status specificationc

requires discussionni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000428

belongs to
curation status specificationc

term importedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000228

belongs to
obsolescence reason specificationc

term splitni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000229

belongs to
obsolescence reason specificationc

terms mergedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000227

belongs to
obsolescence reason specificationc

to be replaced with external ontology termni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000423

belongs to
curation status specificationc

uncuratedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000124

belongs to
curation status specificationc

universalni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000410

belongs to
denotator typec

Annotation Properties

close matchap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2004/02/skos/core#closeMatch

commentap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#comment

contributorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/contributor

created byap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#created_by

creation dateap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#creation_date

creatorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/creator

database_cross_referenceap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasDbXref

default namespaceap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#default-namespace

definitionap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000115

deprecatedap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2002/07/owl#deprecated

descriptionap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/description

editor noteap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000116

has broad synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym

has_exact_synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasExactSynonym

has_narrow_synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym

has_obo_format_versionap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion

has_obo_namespaceap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasOBONamespace

has_related_synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym

has_scopeap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasScope

has_synonym_typeap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasSynonymType

i a o 0000111ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000111

i a o 0000112ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000112

i a o 0000114ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000114

i a o 0000117ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000117

i a o 0000118ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000118

i a o 0000119ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000119

i a o 0000232ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000232

i a o 0000412ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000412

i a o 0000424ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000424

i a o 0000589ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000589

i a o 0000600ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000600

idap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#id

in subsetap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#inSubset

is a defining property chain axiomap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002581

is a defining property chain axiom where second argument is reflexiveap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002582

is metadata tagap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#is_metadata_tag

is rule enabledap back to ToC or Annotation Property ToC

IRI: http://swrl.stanford.edu/ontologies/3.3/swrla.owl#isRuleEnabled

labelap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#label

licenseap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/license

namespace-id-ruleap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#NamespaceIdRule

r o 0001900ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001900

r o 0002259ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002259

has super-properties
subset propertyap

r o 0002575ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002575

r o 0004049ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004049

r o 0004050ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004050

r o 0040042ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0040042

ro ecoap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/ro/subsets#ro-eco

has super-properties
subset propertyap

see alsoap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#seeAlso

shorthandap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#shorthand

sourceap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/source

sourceap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/source

subset propertyap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#SubsetProperty

has sub-properties
r o 0002259ap, ro ecoap, valid for go annotation extensionap, valid for go gp2termap, valid for go ontologyap, valid for gocamap

synonym typically used in the context of human anatomyap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/bspo#human

has super-properties
synonym_type_propertyap

synonym typically used in the context of vertebrate anatomyap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/bspo#vertebrate

has super-properties
synonym_type_propertyap

synonym_type_propertyap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty

has sub-properties
synonym typically used in the context of human anatomyap, synonym typically used in the context of vertebrate anatomyap

term replaced byap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0100001

Add as annotation triples in the granting ontology

titleap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/title

valid for go annotation extensionap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension

has super-properties
subset propertyap

valid for go gp2termap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/valid_for_go_gp2term

has super-properties
subset propertyap

valid for go ontologyap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/valid_for_go_ontology

has super-properties
subset propertyap

valid for gocamap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/valid_for_gocam

has super-properties
subset propertyap

General Axioms

General Subclass Definition back to ToC

causally influencesop some material entityc is subclass of

(participates inop some causally upstream of or withinop some processc) or (capable ofop some participates inop some causally upstream of or withinop some processc)

SWRL rules

Rule #1back to ToC

has componentop(?w,?p) , processc(?w) , processc(?p) -> has component processop(?w,?p)

Rule #2back to ToC

has characteristicop(?e,?d) , dispositionc(?d) -> has dispositionop(?e,?d)

Rule #3back to ToC

has characteristicop(?e,?d) , qualityc(?d) -> has qualityop(?e,?d)

Rule #4back to ToC

has characteristicop(?e,?d) , rolec(?d) -> has roleop(?e,?d)

Rule #5back to ToC

has characteristicop(?e,?d) , functionc(?d) -> has functionop(?e,?d)

Rule #6back to ToC

enablesop(?z,?y) , directly regulatesop(?x,?y) , molecular_functionc(?x) , molecular_functionc(?y) -> has inputop(?x,?z)

Rule #7back to ToC

molecular_functionc(?y) , enablesop(?x,?y) , has partop(?y,?z) -> enablesop(?x,?z)

Rule #8back to ToC

biological_processc(?z) , part ofop(?y,?z) , enablesop(?x,?y) -> involved inop(?x,?z)

Rule #9back to ToC

directly regulatesop(?a1,?a2) , kinase activityc(?a1) , enabled byop(?a1,?g1) , enabled byop(?a2,?g2) -> phosphorylatesop(?g1,?g2)

Rule #10back to ToC

in left side ofop(?y,?z) , part ofop(?x,?y) -> in left side ofop(?x,?z)

Rule #11back to ToC

in right side ofop(?y,?z) , part ofop(?x,?y) -> in right side ofop(?x,?z)

Rule #12back to ToC

in lateral side ofop(?y,?z) , part ofop(?x,?y) -> in lateral side ofop(?x,?z)

Rule #13back to ToC

input ofop(?B,?C) , enabled byop(?A,?B) , has regulatory component activityop(?D,?C) -> directly regulatesop(?A,?D)

Rule #14back to ToC

input ofop(?B,?C) , enabled byop(?A,?B) , has negative regulatory component activityop(?D,?C) -> directly negatively regulatesop(?A,?D)

Rule #15back to ToC

input ofop(?B,?C) , enabled byop(?A,?B) , has positive regulatory component activityop(?D,?C) -> directly positively regulatesop(?A,?D)

Rule #16back to ToC

has effector activityop(?mf,?eff) , has inputop(?eff,?in) -> has inputop(?mf,?in)

Rule #17back to ToC

has effector activityop(?mf,?eff) , has inputop(?mf,?in) -> has inputop(?eff,?in)

Rule #18back to ToC

directly regulatesop(?mf,?mf2) , has effector activityop(?mf,?eff) -> directly regulatesop(?eff,?mf2)

Rule #19back to ToC

has effector activityop(?mf,?eff) , directly positively regulatesop(?mf,?mf2) -> directly positively regulatesop(?eff,?mf2)

Rule #20back to ToC

directly negatively regulatesop(?mf,?mf2) , has effector activityop(?mf,?eff) -> directly negatively regulatesop(?eff,?mf2)

Rule #21back to ToC

overlapsop(?x,?y) , causally downstream ofop(?x,?y) -> nothing(?y) , nothing(?x)

Rule #22back to ToC

overlapsop(?x,?y) , causally upstream ofop(?x,?y) -> nothing(?y) , nothing(?x)

Rule #23back to ToC

negatively regulatesop(?x,?y) , positively regulatesop(?y,?z) -> negatively regulatesop(?x,?z)

Rule #24back to ToC

negatively regulatesop(?y,?z) , positively regulatesop(?x,?y) -> negatively regulatesop(?x,?z)

Rule #25back to ToC

negatively regulatesop(?x,?y) , negatively regulates characteristicop(?y,?z) -> positively regulates characteristicop(?x,?z)

Rule #26back to ToC

causally upstream ofop(?y,?z) , acts upstream of or withinop(?x,?y) -> acts upstream ofop(?x,?z)

Namespace Declarations back to ToC

default namespace
http://purl.obolibrary.org/obo/bspo.owl#
2022-06-28
http://purl.obolibrary.org/obo/bspo/releases/2022-06-28/
225
https://github.com/jhpoelen/eol-globi-data/issues/225#
bspo
http://purl.obolibrary.org/obo/bspo#
dc
http://purl.org/dc/elements/1.1/
docs
http://purl.obolibrary.org/obo/ro/docs/
index-php
http://wiki.geneontology.org/index.php/
issues
https://github.com/obophenotype/uberon/issues/
obo
http://purl.obolibrary.org/obo/
oboInOwl
http://www.geneontology.org/formats/oboInOwl#
orcid-org
https://orcid.org/
owl
http://www.w3.org/2002/07/owl#
pubmed
http://www.ncbi.nlm.nih.gov/pubmed/
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
ro-owl
http://purl.obolibrary.org/obo/ro.owl#
skos
http://www.w3.org/2004/02/skos/core#
subsets
http://purl.obolibrary.org/obo/ro/subsets#
swrl
http://www.w3.org/2003/11/swrl#
swrla
http://swrl.stanford.edu/ontologies/3.3/swrla.owl#
swrlb
http://www.w3.org/2003/11/swrlb#
terms
http://purl.org/dc/terms/
wiki
http://ontologydesignpatterns.org/wiki/
xsd
http://www.w3.org/2001/XMLSchema#

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni .