Genomics Cohorts Knowledge Ontology

IRI:
http://purl.obolibrary.org/obo/gecko.owl
Version IRI:
http://purl.obolibrary.org/obo/gecko/releases/2021-01-18/gecko.owl
Other visualisation:
Ontology source

Abstract

The GECKO is maintained by the CINECA project, https://www.cineca-project.eu, and standardises attributes commonly used for genomics cohort description as well as individual-level data items. A series of tools is being developed to enable automated generation of harmonised data files based on a JSON schema mapping file. For more information please contact info@cineca-project.eu

Table of Content

  1. Introduction
  2. Classes
  3. Object Properties
  4. Annotation Properties
  5. Namespace Declarations

Introduction

An ontology to represent genomics cohort attributes.

Classes

agec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000011

has super-classes
qualityc

aggregated clinical visit informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/EUPATH_0000305

has super-classes
information content entityc

alcohol use historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000069

has super-classes
lifestyle historyc

Alzheimer's Disease Assessment Scale scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000134

has super-classes
cognitive measurementc

assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000070

has super-classes
planned processc
has sub-classes
genomic assayc, imaging assayc, organism identification assayc

availability textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000612

has super-classes
textual entityc
has sub-classes
biosample availability textual entityc

beliefc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MF_0000041

has super-classes
dispositionc

biological sexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000047

has super-classes
organismal qualityc

biological_processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0008150

Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this.
has super-classes
processc
has sub-classes
emotionc, response to medicationc

biosample availability textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000113

has super-classes
availability textual entityc
is aboutop some organism substancec

biosample processingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000047

has super-classes
material processingc

biosample sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000044

has super-classes
countc

biosample storagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000026

has super-classes
storagec

birthplace locationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000063

has super-classes
sitec

bloodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000178

has super-classes
organism substancec
has sub-classes
blood collected from fasting subjectc

blood collected from fasting subjectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000019

has super-classes
bloodc

blood pressure measurement data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CMO_0000003

has super-classes
cardiovascular measurement data itemc

body height data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CMO_0000106

has super-classes
body morphological measurement data itemc

body morphological measurement data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CMO_0000021

has super-classes
clinical measurement data itemc
has sub-classes
body height data itemc, body weight data itemc

body weight data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CMO_0000012

has super-classes
body morphological measurement data itemc

cancerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MONDO_0004992

has super-classes
disease or disorderc

cardiovascular diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MONDO_0004995

has super-classes
disease or disorderc

cardiovascular measurement data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CMO_0000001

has super-classes
clinical measurement data itemc
has sub-classes
blood pressure measurement data itemc, pulse data itemc

cause of participant deathc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/EUPATH_0000147

has super-classes
information content entityc

CERAD Neuropsychological Battery scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000138

has super-classes
cognitive measurementc

Clinical Dementia Rating Scale scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000143

has super-classes
cognitive measurementc

clinical historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000015

has super-classes
information content entityc
has sub-classes
family history of diseasec, lifestyle historyc, reproductive historyc, treatment historyc

clinical measurement data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CMO_0000000

has super-classes
measurement datumc
has sub-classes
body morphological measurement data itemc, cardiovascular measurement data itemc

cognitive measurementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000119

has super-classes
psychological measurementc
has sub-classes
Alzheimer's Disease Assessment Scale scorec, CERAD Neuropsychological Battery scorec, Clinical Dementia Rating Scale scorec, Mini-Mental State Exam scorec, Montreal Cognitive Assessment Test scorec, Neuropsychiatric Inventory scorec, Penn Computerized Neurocognitive Battery scorec, Severe Impairment Battery scorec

collection of organismsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000000

May be of the same or different species.
has super-classes
material entityc

congenital disorderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000140

has super-classes
disease or disorderc

consent textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000619

has super-classes
textual entityc

copy number variation profiling assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000537

has super-classes
genomic assayc

countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000047

has super-classes
measurement datumc
has sub-classes
biosample sizec, sample sizec

data collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000013

has super-classes
planned processc

data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000027

has super-classes
information content entityc
has sub-classes
income datac, measurement datumc, population data itemc

datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000093

has super-classes
measurement datumc

diagnostic procedure historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000133

Includes procedures such as colonoscopies, ultrasounds, etc., but excludes laboratory tests.
has super-classes
non-pharmacological treatment historyc

digestive system diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MONDO_0004335

has super-classes
disease or disorderc

directive information entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000033

has super-classes
information content entityc
has sub-classes
drug administration specificationc, inclusion criterionc, objective specificationc, plan specificationc, timelinec

disease of visual systemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MONDO_0024458

has super-classes
disease or disorderc

disease or disorderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MONDO_0000001

has super-classes
dispositionc
has sub-classes
cancerc, cardiovascular diseasec, congenital disorderc, digestive system diseasec, disease of visual systemc, endocrine system diseasec, hematologic diseasec, immune system diseasec, infectious diseasec, injuryc, integumentary system diseasec, mental disorderc, musculoskeletal system diseasec, nervous system disorderc, otorhinolaryngologic diseasec, poisoningc, reproductive system diseasec, respiratory system diseasec, urinary system diseasec

disease treated by prescription drugc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000094

has super-classes
information content entityc
part ofop some prescription drug historyc

dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000016

has super-classes
realizable entityc
has sub-classes
beliefc, disease or disorderc

documentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000310

has super-classes
information content entityc
has sub-classes
drug prescriptionc

drug administration specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PDRO_0010022

has super-classes
directive information entityc

drug prescriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PDRO_0000024

has super-classes
documentc

education levelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000065

has super-classes
organismal qualityc

emotionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000121

has super-classes
biological_processc

endocrine system diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MONDO_0005151

has super-classes
disease or disorderc

environment associated with human dwellingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/EUPATH_0010032

has super-classes
material entityc

epigenetic modification assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002020

has super-classes
genomic assayc

eQTL analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000042

Potential new OBI request
has super-classes
genomic assayc

ethnicityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000061

has super-classes
organismal qualityc

exome sequencing assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002118

has super-classes
genomic assayc

exposure to environmental and workplace carcinogens historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002415

has super-classes
information content entityc

family and household structurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000066

has super-classes
information content entityc

family history of diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000132

has super-classes
clinical historyc

fecesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001988

has super-classes
organism substancec

genderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000060

has super-classes
organismal qualityc

genomic assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000032

Merged GECKO 'data type' into 'genomics'.
has super-classes
assayc
has sub-classes
RNA-seq assayc, copy number variation profiling assayc, eQTL analysisc, epigenetic modification assayc, exome sequencing assayc, genotyping assayc, microbiome sequencing assayc, whole genome sequencing assayc, whole metagenome sequencing assayc

genotyping assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000435

has super-classes
genomic assayc

healthcare informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/EUPATH_0000451

has super-classes
information content entityc

hematologic diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MONDO_0005570

placeholder for lymphoid disease
has super-classes
disease or disorderc

hospitalization informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/EUPATH_0000308

has super-classes
information content entityc

human social environmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000131

has super-classes
immaterial entityc

identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020000

has super-classes
information content entityc
has sub-classes
unique identifierc

imaging assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000185

has super-classes
assayc

immaterial entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000141

has sub-classes
human social environmentc, sitec

immune system diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MONDO_0005046

has super-classes
disease or disorderc

inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500027

has super-classes
directive information entityc

income datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000501

has super-classes
data itemc

infectious diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MONDO_0005550

Replaces 'infection' in disease hierarchy. OBI imported term infection is moved to pathologic process. This class is a container class for infectious diseases, not the process of infection itself.
has super-classes
disease or disorderc

information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000030

has sub-classes
aggregated clinical visit informationc, cause of participant deathc, clinical historyc, data itemc, directive information entityc, disease treated by prescription drugc, documentc, exposure to environmental and workplace carcinogens historyc, family and household structurec, healthcare informationc, hospitalization informationc, identifierc, information on functional limitationsc, information on use of assistive devicesc, marital statusc, native language of individualc, occupationc, religious affiliationc, textual entityc

information on functional limitationsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000128

has super-classes
information content entityc

information on use of assistive devicesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000129

has super-classes
information content entityc

injuryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MONDO_0021178

has super-classes
disease or disorderc

integumentary system diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MONDO_0002051

has super-classes
disease or disorderc

life cycle stagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000105

has super-classes
processc

lifestyle historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000067

has super-classes
clinical historyc
has sub-classes
alcohol use historyc, nutritional historyc, oral health historyc, physical activity historyc, recreational drug historyc, sleep historyc, tobacco use historyc

marital statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/EUPATH_0000374

has super-classes
information content entityc

material entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000040

has sub-classes
collection of organismsc, environment associated with human dwellingc, organism substancec

material processingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000094

has super-classes
planned processc
has sub-classes
biosample processingc

measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000109

has super-classes
data itemc
has sub-classes
clinical measurement data itemc, countc, datec, psychological measurementc, statisticc

mental disorderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MONDO_0005084

has super-classes
disease or disorderc

microbiome sequencing assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000040

Potential new OBI request
has super-classes
genomic assayc

Mini-Mental State Exam scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000135

has super-classes
cognitive measurementc

Montreal Cognitive Assessment Test scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000137

has super-classes
cognitive measurementc

musculoskeletal system diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MONDO_0002081

has super-classes
disease or disorderc

native language of individualc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000136

has super-classes
information content entityc

nervous system disorderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MONDO_0005071

has super-classes
disease or disorderc

Neuropsychiatric Inventory scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000142

has super-classes
cognitive measurementc

non-pharmacological treatment historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000091

has super-classes
treatment historyc
has sub-classes
diagnostic procedure historyc, physical therapy historyc, psychological treatment historyc, radiological treatment historyc, surgical historyc

nutritional historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000072

has super-classes
lifestyle historyc

objective specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000005

has super-classes
directive information entityc

occupationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/EUPATH_0000359

has super-classes
information content entityc

oral health historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000122

has super-classes
lifestyle historyc

organism identification assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001624

has super-classes
assayc

organism substancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000463

has super-classes
material entityc
has sub-classes
bloodc, fecesc, salivac, urinec

organismal qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001995

has super-classes
qualityc
has sub-classes
biological sexc, education levelc, ethnicityc, genderc

otorhinolaryngologic diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MONDO_0024623

Editor note: consider uberon class
has super-classes
disease or disorderc

Penn Computerized Neurocognitive Battery scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000139

has super-classes
cognitive measurementc

perception of health measurementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000126

has super-classes
psychological measurementc

personality measurementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000120

has super-classes
psychological measurementc

physical activity historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000104

has super-classes
lifestyle historyc

physical therapy historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000125

has super-classes
non-pharmacological treatment historyc

physician contact textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000073

has super-classes
textual entityc

plan specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000104

2/3/2009 Comment from OBI review. Action specification not well enough specified. Conditional specification not well enough specified. Question whether all plan specifications have objective specifications. Request that IAO either clarify these or change definitions not to use them
has super-classes
directive information entityc
has sub-classes
study designc

planned processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000011

has super-classes
processc
has sub-classes
assayc, data collectionc, material processingc, storagec

poisoningc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MONDO_0029000

has super-classes
disease or disorderc

population age rangec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000012

has super-classes
population qualityc

population data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000005

is equivalent to
is aboutop some collection of organismsc
has super-classes
data itemc
has sub-classes
population locationc

population gender or gendersc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000011

has super-classes
population qualityc

population locationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000006

has super-classes
population data itemc
is aboutop some sitec

population qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000009

is equivalent to
inheres inop some collection of organismsc
has super-classes
qualityc
has sub-classes
population age rangec, population gender or gendersc, population sex or sexesc

population sex or sexesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000010

has super-classes
population qualityc

population sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000008

has super-classes
sample sizec
is aboutop some collection of organismsc

prescription drug historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000093

has super-classes
treatment historyc

processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000015

has sub-classes
biological_processc, life cycle stagec, planned processc

psychological measurementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000118

See also EFO:0009095
has super-classes
measurement datumc
has sub-classes
cognitive measurementc, perception of health measurementc, personality measurementc, quality of life measurementc

psychological treatment historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000123

has super-classes
non-pharmacological treatment historyc

pulse data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CMO_0000294

has super-classes
cardiovascular measurement data itemc

qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000019

has sub-classes
agec, organismal qualityc, population qualityc, symptomc

quality of life measurementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000127

has super-classes
psychological measurementc

radiological treatment historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000124

has super-classes
non-pharmacological treatment historyc

realizable entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000017

has sub-classes
dispositionc

recreational drug historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000103

has super-classes
lifestyle historyc

religious affiliationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000130

has super-classes
information content entityc

reproductive historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000114

has super-classes
clinical historyc

reproductive system diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MONDO_0005039

has super-classes
disease or disorderc

residence locationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000064

has super-classes
sitec

respiratory system diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MONDO_0005087

has super-classes
disease or disorderc

response to medicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000096

has super-classes
biological_processc

RNA-seq assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001271

has super-classes
genomic assayc

salivac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001836

has super-classes
organism substancec

sample sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000106

has super-classes
countc
has sub-classes
population sizec

Severe Impairment Battery scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000141

has super-classes
cognitive measurementc

sitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000029

has super-classes
immaterial entityc
has sub-classes
birthplace locationc, residence locationc

sleep historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000071

has super-classes
lifestyle historyc

statisticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000039

has super-classes
measurement datumc
has sub-classes
summary statistic for federated datac

storagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302893

has super-classes
planned processc
has sub-classes
biosample storagec

study designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500000

has super-classes
plan specificationc

summary statistic for federated datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000102

has super-classes
statisticc

surgical historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000092

has super-classes
non-pharmacological treatment historyc

symptomc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000020

has super-classes
qualityc

textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000300

has super-classes
information content entityc
has sub-classes
availability textual entityc, consent textual entityc, physician contact textual entityc

timelinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000003

has super-classes
directive information entityc

tobacco use historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000068

has super-classes
lifestyle historyc

treatment historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000115

has super-classes
clinical historyc
has sub-classes
non-pharmacological treatment historyc, prescription drug historyc

unique identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GECKO_0000055

has super-classes
identifierc

urinary system diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MONDO_0002118

has super-classes
disease or disorderc

urinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001088

has super-classes
organism substancec

whole genome sequencing assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002117

has super-classes
genomic assayc

whole metagenome sequencing assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002623

has super-classes
genomic assayc

Object Properties

inheres inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000052

is aboutop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000136

part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000050

Annotation Properties

alternative termap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000118

commentap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#comment

definitionap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000115

definition sourceap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000119

example of usageap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000112

has_alternative_idap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasAlternativeId

has_broad_synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym

has_exact_synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasExactSynonym

has_narrow_synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym

has_related_synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym

IHCC browser labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GECKO_9000001

IHCC categoryap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GECKO_9000000

labelap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#label

see alsoap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#seeAlso

Namespace Declarations back to ToC

default namespace
http://purl.obolibrary.org/obo/gecko.owl#
2021-01-18
http://purl.obolibrary.org/obo/gecko/releases/2021-01-18/
dc
http://purl.org/dc/elements/1.1/
obo
http://purl.obolibrary.org/obo/
oboInOwl
http://www.geneontology.org/formats/oboInOwl#
owl
http://www.w3.org/2002/07/owl#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
terms
http://purl.org/dc/terms/
xsd
http://www.w3.org/2001/XMLSchema#

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni.