This term was made obsolete because it was split into the more specific terms for PSM-level combined FDRScore (MS:1002356), distinct peptide-level combined FDRScore (MS:1002361), protein-level combined FDRScore (MS:1002366) and protein group-level combined FDRScore (MS:1002375).

has super-classes: PSM-level search engine specific statistic^c; search engine specific score^c; has value type^op some xsd double^c

combined FDRScore for proteins^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002366

has super-classes: search engine specific score for proteins^c; has_domain^op some value greater than zero but less than or equal to one^c; has value type^op some xsd double^c

combined ms-ms + spectral library search^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002755

has super-classes: search type^c

combined pmf + ms-ms search^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001584

has super-classes: search type^c

Comet^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002251

has super-classes: analysis software^c

Comet:deltacn^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002253

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

Comet:deltacnstar^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002254

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

Comet:expectation value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002257

has super-classes: search engine specific score^c; has value type^op some xsd double^c

Comet:matched ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002258

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd int^c

Comet:sprank^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002256

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

Comet:spscore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002255

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

Comet:total ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002259

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd int^c

Comet:xcorr^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002252

has super-classes: PSM-level search engine specific statistic^c; has_order^op some higher score better^c; has value type^op some xsd double^c

command-line parameters^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001885

has super-classes: data processing parameter^c; library provenance attribute^c; has value type^op some xsd string^c

Comment^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001033

has super-classes: PEFF file sequence entry term^c; has value type^op some xsd string^c

common search engine input parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002094

has super-classes: search engine input parameter^c
has sub-classes: Calculate Probability Scores^c, No fixed modifications searched^c, No variable modifications searched^c, minimum number of enzymatic termini^c

common software input parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002104

has super-classes: software input parameter^c

compact^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002280

has super-classes: Bruker Daltonics micrOTOF series^c

Compass^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000712

has super-classes: Bruker software^c; analysis software^c; data processing software^c

Compass for HCT/esquire^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000713

has super-classes: Bruker software^c; analysis software^c; data processing software^c

Compass for micrOTOF^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000714

has super-classes: Bruker software^c; analysis software^c; data processing software^c

Compass OpenAccess^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000715

has super-classes: Bruker software^c; analysis software^c; data processing software^c

Compass Security Pack^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000716

has super-classes: Bruker software^c

CompassXport^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000717

has super-classes: Bruker software^c; data processing software^c

CompassXtract^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000718

has super-classes: Bruker software^c; data processing software^c

completion time^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000747

has super-classes: data processing parameter^c; has value type^op some xsd date time^c

compound data type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002709

has sub-classes: list of type^c

Compound Discoverer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002880

has super-classes: small molecule analysis software^c

compound identification confidence code in MS-DIAL^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003032

has super-classes: small molecule identification attribute^c; has value type^op some xsd string^c

compound identification confidence level^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002896

has super-classes: small molecule identification attribute^c; has value type^op some xsd string^c

Conceptual Entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C20181

has sub-classes: Outlier^c

cone voltage^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000876

has super-classes: source attribute^c; has_units^op some u o 0000218^c; has value type^op some xsd float^c

confidence score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001193

has super-classes: peptide sequence-level identification statistic^c; single protein identification statistic^c; has value type^op some xsd double^c

confident distinct peptide sequences^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001098

has super-classes: protein-level identification attribute^c; has value type^op some xsd non negative integer^c

confident peptide qualification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001099

has super-classes: protein-level identification attribute^c; has value type^op some xsd non negative integer^c

confident peptide sequence number^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001100

has super-classes: protein-level identification attribute^c; has value type^op some xsd non negative integer^c

Conflict^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001023

has super-classes: PEFF file sequence entry term^c; has regexp^op some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment^c; has value type^op some xsd string^c

consecutive reaction monitoring^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000244

This former purgatory term was made obsolete.

consecutive reaction monitoring^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000327

This term was made obsolete because it was replaced by consecutive reaction monitoring (MS:1000244).

consecutive reaction monitoring chromatogram^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001474

This term was made obsolete because, by design, it can't be properly represented in mzML 1.1. CRM experiments must be represented in a spectrum-centric way.

has super-classes: ion current chromatogram^c

consensus result^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002315

has super-classes: spectrum identification result details^c

consensus scoring^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002492

has super-classes: special processing^c

consensus spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003067

has super-classes: spectrum aggregation type^c

consensusXML^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002825

has super-classes: OpenMS file format^c

constant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000088

This child of the former purgatory term resolution type was made obsolete.

constant neutral gain scan^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000324

This former purgatory term was made obsolete.

constant neutral gain spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000325

has super-classes: mass spectrum^c

constant neutral loss scan^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000323

This former purgatory term was made obsolete.

constant neutral loss spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000326

has super-classes: mass spectrum^c

constant neutral mass loss^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000097

This former purgatory term was made obsolete.

constituent identification file^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003204

has super-classes: library provenance attribute^c; has value type^op some xsd string^c

constituent library file^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003205

has super-classes: library provenance attribute^c; has value type^op some xsd string^c

constituent spectrum file^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003203

has super-classes: library provenance attribute^c; has value type^op some xsd string^c

contact address^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000587

has super-classes: contact attribute^c; has value type^op some xsd string^c

contact affiliation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000590

has super-classes: contact attribute^c; has value type^op some xsd string^c

contact attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000585

has super-classes: object attribute^c; part_of^op some Proteomics Standards Initiative Mass Spectrometry Vocabularies^c
has sub-classes: contact URL^c, contact address^c, contact affiliation^c, contact email^c, contact fax number^c, contact name^c, contact phone number^c, contact role^c, contact toll-free phone number^c, role type^c

contact email^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000589

has super-classes: contact attribute^c; has value type^op some xsd string^c

contact fax number^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001756

has super-classes: contact attribute^c; has value type^op some xsd string^c

contact name^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000586

has super-classes: contact attribute^c; has value type^op some xsd string^c

contact phone number^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001755

has super-classes: contact attribute^c; has value type^op some xsd string^c

contact role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002033

has super-classes: contact attribute^c
has sub-classes: co-author^c, dataset submitter^c, first author^c, lab head^c, senior author^c

contact toll-free phone number^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001757

has super-classes: contact attribute^c; has value type^op some xsd string^c

contact URL^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000588

has super-classes: contact attribute^c; has value type^op some xsd string^c

continuous flow fast atom bombardment^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000055

has super-classes: inlet type^c

Conventional ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000359

This child of the former purgatory term ion chemical type was made obsolete.

Conversion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000016

has super-classes: PEFF file header section term^c; has value type^op some xsd string^c

conversion dynode^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000346

has super-classes: detector type^c
has sub-classes: conversion dynode electron multiplier^c, conversion dynode photomultiplier^c

conversion dynode electron multiplier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000108

has super-classes: conversion dynode^c

conversion dynode photomultiplier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000109

has super-classes: conversion dynode^c

conversion software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002333

has super-classes: data processing software^c
has sub-classes: PRIDE Converter2^c, ProCon^c, python-psims^c

Conversion to dta^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000741

has super-classes: file format conversion^c

Conversion to mzData^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000546

has super-classes: file format conversion^c

Conversion to mzML^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000544

has super-classes: file format conversion^c

Conversion to mzMLb^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002839

has super-classes: file format conversion^c

Conversion to mzXML^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000545

has super-classes: file format conversion^c

convex hull baseline reduction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001995

has super-classes: baseline reduction^c

copyright notice^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003198

has super-classes: spectral library attribute^c; has value type^op some xsd string^c

count of identified clusters^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002406

has super-classes: protein group-level result list attribute^c; has value type^op some xsd int^c

count of identified peptidoforms^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003250

has super-classes: peptide sequence-level result list attribute^c; has value type^op some xsd int^c

count of identified proteins^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002404

has super-classes: protein-level result list attribute^c; has value type^op some xsd int^c

count of identified spectra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003251

has super-classes: PSM-level result list attribute^c; has value type^op some xsd int^c

counts per second^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000814

has super-classes: intensity unit^c

counts reporting^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002122

has super-classes: feature list attribute^c

Cover^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C68811

has super-classes: Action^c

CPTAC accession number^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003031

has super-classes: external reference identifier^c; has value type^op some xsd string^c

Crc64^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001024

has super-classes: PEFF file sequence entry term^c; has value type^op some xsd string^c

CRM spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000581

has super-classes: mass spectrum^c

cross-link acceptor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002510

has super-classes: cross-linking attribute^c; has value type^op some xsd string^c

cross-link donor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002509

has super-classes: cross-linking attribute^c; has value type^op some xsd string^c

cross-link spectrum identification item^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002511

has super-classes: cross-linking attribute^c; has value type^op some xsd int^c

cross-linked peptide ion interpretation format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003105

has super-classes: ion interpretation format^c

cross-linking attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002508

has super-classes: single identification result attribute^c
has sub-classes: cross-link acceptor^c, cross-link donor^c, cross-link spectrum identification item^c

cross-linking result details^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002675

has super-classes: part_of^op some spectrum interpretation^c
has sub-classes: interaction score derived from cross-linking^c

cross-linking score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002512

has super-classes: search engine specific score for proteins^c; has value type^op some xsd double^c

cross-linking search^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002494

has super-classes: special processing^c

crushed crystal MALDI sample preparation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001988

has super-classes: matrix application type^c

curator keyword^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001926

has super-classes: external reference keyword^c; has value type^op some xsd string^c

custom unreleased software tool^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000799

has super-classes: software^c; has value type^op some xsd string^c

customization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000032

has super-classes: instrument attribute^c; has value type^op some xsd string^c

cyclotron^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000288

has super-classes: mass analyzer type^c

cyclotron motion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000305

This child of the former purgatory term m/z Separation Method was made obsolete.

D-Score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002536

has super-classes: PTM localization PSM-level statistic^c; has regexp^op some regular expression for modification localization scoring^c; has value type^op some xsd string^c

D-Score threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002557

has super-classes: PTM localization score threshold^c; has value type^op some xsd double^c

dalton^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000212

This term was made obsolete because it was redundant with the Unit Ontology term dalton (UO:0000221).

daly detector^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000110

has super-classes: detector type^c

Data derived from previous dataset^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002863

has super-classes: Experiment additional parameter^c

Data Explorer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000536

has super-classes: Applied Biosystems software^c; acquisition software^c; analysis software^c; data processing software^c

data file checksum type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000561

has super-classes: part_of^op some source data file^c
has sub-classes: MD5^c, SHA-1^c, SHA-256^c

data file content^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000524

has super-classes: part_of^op some source data file^c
has sub-classes: PDA spectrum^c, absorption spectrum^c, electromagnetic radiation chromatogram^c, electromagnetic radiation spectrum^c, emission spectrum^c, ion current chromatogram^c, mass spectrometry acquisition method^c, mass spectrum^c

data filtering^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001486

has super-classes: data processing action^c
has sub-classes: high intensity data point removal^c, low intensity data point removal^c

data independent acquisition from dissociation of full mass range^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003227

has super-classes: mass spectrometry acquisition method^c; data-independent acquisition^c; dissociation of full mass range^c; ion mobility separation^c

data independent acquisition from dissociation of full mass range after ion mobility separation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003226

has super-classes: mass spectrometry acquisition method^c; data-independent acquisition^c; dissociation of full mass range^c; ion mobility separation^c

data independent acquisition from dissociation of scanning quadrupole across mass range^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003228

has super-classes: mass spectrometry acquisition method^c; data-independent acquisition^c; dissociation of scanning quadrupole across a specified mass range^c

data independent acquisition from dissociation of sequential mass ranges^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003224

has super-classes: mass spectrometry acquisition method^c; data-independent acquisition^c; dissociation of sequential mass ranges^c

data independent acquisition from dissociation of sequential mass ranges after ion mobility separation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003225

has super-classes: mass spectrometry acquisition method^c; data-independent acquisition^c; dissociation of sequential mass ranges^c; ion mobility separation^c

data processing action^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000543

has super-classes: data transformation^c
has sub-classes: adduct deconvolution^c, baseline reduction^c, charge deconvolution^c, charge state calculation^c, data filtering^c, deisotoping^c, intensity normalization^c, ion mobility deconvolution^c, m/z calibration^c, peak intensity transform^c, peak picking^c, precursor recalculation^c, retention time alignment^c, smoothing^c

data processing parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000630

has super-classes: part_of^op some spectrum generation information^c
has sub-classes: command-line parameters^c, completion time^c, data processing start time^c, high intensity threshold^c, inclusive high intensity threshold^c, inclusive low intensity threshold^c, low intensity threshold^c

data processing software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001457

has super-classes: software^c
has sub-classes: 4000 Series Explorer Software^c, 4700 Explorer^c, 6300 Series Ion Trap Data Analysis Software^c, ALEX^c, ALEX123^c, Analyst^c, BioAnalyst^c, BioTools^c, Bioworks^c, CAMERA^c, CLINPROT^c, CLINPROT micro^c, ChromaTOF HRT software^c, ChromaTOF software^c, Compass^c, Compass OpenAccess^c, Compass for HCT/esquire^c, Compass for micrOTOF^c, CompassXport^c, CompassXtract^c, Data Explorer^c, DataAnalysis^c, Empower^c, FlexAnalysis^c, GPS Explorer^c, Genespring MS^c, Greazy^c, LIMSA^c, LIQUID^c, LOBSTAHS^c, LPPtiger^c, LightSight Software^c, LipiDex^c, Lipid Data Analyzer^c, Lipid-Pro^c, LipidBlast^c, LipidFinder^c, LipidHunter^c, LipidMatch^c, LipidQA^c, LipidXplorer^c, MALDI Solutions^c, MALDI Solutions LC-MALDI^c, METLIN^c, MRMPilot Software^c, MS-DIAL^c, MSDK^c, MSnbase^c, MZmine^c, Maltcms^c, MarkerView Software^c, MassHunter BioConfirm^c, MassHunter Mass Profiler^c, MassHunter Metabolite ID^c, MassHunter Qualitative Analysis^c, MassHunter Quantitative Analysis^c, MassLynx^c, Maui^c, MultiQuant^c, MzStar^c, MzWiff^c, PEAKS Node^c, PEAKS Online^c, PEAKS Studio^c, PepFinder^c, PinPoint^c, Pro BLAST^c, Pro ICAT^c, Pro ID^c, Pro Quant^c, ProfileAnalysis^c, ProteinLynx Global Server^c, ProteinPilot Software^c, Proteios^c, ProteoWizard software^c, Proteome Discoverer^c, QuantAnalysis^c, ReAdW^c, SCIEX TOF/TOF Series Explorer Software^c, SCiLS Lab^c, SQID^c, Spectrum Mill for MassHunter Workstation^c, TOPP software^c, ThermoRawFileParser^c, TissueView Software^c, Trapper^c, UNIFY^c, Voyager Biospectrometry Workstation System^c, XCMS^c, Xcalibur^c, conversion software^c, flexImaging^c, massWolf^c, ms_deisotope^c, mzR^c, postprocessing software^c, preprocessing software^c, pymzML^c

data processing start time^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002435

has super-classes: data processing parameter^c; has value type^op some xsd date time^c

data stored in database^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001107

has super-classes: intermediate analysis format^c

data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000452

has super-classes: part_of^op some spectrum generation information^c
has sub-classes: data processing action^c, file format conversion^c

data-dependent acquisition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003221

has super-classes: mass spectrometry acquisition method aspect^c

data-independent acquisition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003215

has super-classes: mass spectrometry acquisition method aspect^c
has sub-classes: data independent acquisition from dissociation of full mass range^c, data independent acquisition from dissociation of full mass range after ion mobility separation^c, data independent acquisition from dissociation of scanning quadrupole across mass range^c, data independent acquisition from dissociation of sequential mass ranges^c, data independent acquisition from dissociation of sequential mass ranges after ion mobility separation^c, selected ion monitoring^c, selected reaction monitoring^c

DataAnalysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000719

has super-classes: Bruker software^c; analysis software^c; data processing software^c

database EST^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001178

has super-classes: database type nucleotide^c

database file formats^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001347

has super-classes: search database details^c
has sub-classes: ASN.1^c, FASTA format^c, NBRF PIR^c, NCBI *.p*^c, NIST MSP format^c, PEFF format^c, UniProtKB XML sequence format^c, UniProtKB text sequence format^c, clustal aln^c, embl em^c

database filtering^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001019

has super-classes: search database details^c
has sub-classes: Sequence database filter types^c, Sequence database filters^c

database IPI_arabidopsis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001290

has super-classes: database name^c

database IPI_chicken^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001288

has super-classes: database name^c

database IPI_cow^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001289

has super-classes: database name^c

database IPI_human^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001142

has super-classes: database name^c

database IPI_mouse^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001285

has super-classes: database name^c

database IPI_rat^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001286

has super-classes: database name^c

database IPI_zebrafish^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001287

has super-classes: database name^c

database local file path^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001014

has super-classes: search database details^c

database name^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001013

has super-classes: search database details^c
has sub-classes: database IPI_arabidopsis^c, database IPI_chicken^c, database IPI_cow^c, database IPI_human^c, database IPI_mouse^c, database IPI_rat^c, database IPI_zebrafish^c, database UniProtKB^c, database nr^c

database nr^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001084

has super-classes: database name^c

database original uri^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001015

has super-classes: search database details^c; has value type^op some xsd any u r i^c

database sequence details^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001342

has super-classes: search database details^c
has sub-classes: AA sequence^c, NA sequence^c, molecule taxonomy^c, protein description^c

database source^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001012

has super-classes: search database details^c; has value type^op some xsd string^c
has sub-classes: DB source EBI^c, DB source NCBI^c, DB source UniProt^c

database type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001018

has super-classes: search database details^c
has sub-classes: database type amino acid^c, database type nucleotide^c

database type amino acid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001073

has super-classes: database type^c
has sub-classes: database type spectral library^c

database type nucleotide^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001079

has super-classes: database type^c
has sub-classes: database EST^c

database type spectral library^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002752

has super-classes: database type amino acid^c

database UniProtKB^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002126

has super-classes: database name^c
has sub-classes: database UniProtKB/Swiss-Prot^c, database UniProtKB/TrEMBL^c

database UniProtKB/Swiss-Prot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001104

has super-classes: database UniProtKB^c

database UniProtKB/TrEMBL^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002060

has super-classes: database UniProtKB^c

database version^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001016

has super-classes: search database details^c; has value type^op some xsd string^c

DatabaseDescription^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000020

has super-classes: PEFF file header section term^c; has value type^op some xsd string^c

Dataset FTP location^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002852

has super-classes: Experiment additional parameter^c; has value type^op some xsd string^c

dataset submitter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002037

has super-classes: contact role^c

Dataset with its publication pending^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002858

has super-classes: Experiment additional parameter^c

Dataset with no associated published manuscript^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002853

has super-classes: Experiment additional parameter^c

date / time search performed^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001035

has super-classes: search statistics^c

DB accession filter string^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001514

has super-classes: Sequence database filters^c; has value type^op some xsd string^c

DB composition only decoy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001453

has super-classes: decoy DB details^c

DB composition target+decoy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001197

has super-classes: decoy DB details^c

DB filter on accession numbers^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001021

has super-classes: Sequence database filter types^c

DB filter on sequence pattern^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001027

has super-classes: Sequence database filter types^c

DB filter taxonomy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001020

has super-classes: Sequence database filter types^c

DB MW filter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001022

has super-classes: Sequence database filter types^c

DB MW filter maximum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001201

has super-classes: Sequence database filters^c; has_units^op some u o 0000221^c; has_units^op some u o 0000222^c; has value type^op some xsd double^c

DB MW filter minimum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001202

has super-classes: Sequence database filters^c; has_units^op some u o 0000221^c; has_units^op some u o 0000222^c; has value type^op some xsd double^c

DB PI filter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001023

has super-classes: Sequence database filter types^c

DB PI filter maximum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001203

has super-classes: Sequence database filters^c; has value type^op some xsd double^c

DB PI filter minimum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001204

has super-classes: Sequence database filters^c; has value type^op some xsd double^c

DB sequence filter pattern^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001513

has super-classes: Sequence database filters^c; has value type^op some xsd string^c

DB source EBI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001252

has super-classes: database source^c

DB source NCBI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001253

has super-classes: database source^c

DB source UniProt^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001254

has super-classes: database source^c

DbDate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000014

This term was obsoleted.

has super-classes: PEFF file header section term^c

DbDescription^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000010

has super-classes: PEFF file header section term^c; has value type^op some xsd string^c

DBExporter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000754

has super-classes: TOPP software^c

DBImporter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000755

has super-classes: TOPP software^c

DbName^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000008

has super-classes: PEFF file header section term^c; has value type^op some xsd string^c

DbSource^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000012

has super-classes: PEFF file header section term^c; has value type^op some xsd string^c

DbUniqueId^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001001

This term was made obsolete because decided in Heidelberg 2018-04 that this is redundant.

has super-classes: PEFF file sequence entry term^c; has value type^op some xsd string^c

DbVersion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000013

has super-classes: PEFF file header section term^c; has value type^op some xsd string^c

de facto standard^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000899

has super-classes: standard^c

de novo search^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001010

has super-classes: search type^c

DeBunker^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001973

has super-classes: analysis software^c

DeBunker:score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001974

has super-classes: PSM-level search engine specific statistic^c; PTM localization PSM-level statistic^c; has regexp^op some regular expression for modification localization scoring^c; has value type^op some xsd string^c

DeBunker:score threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002560

has super-classes: PTM localization score threshold^c; has value type^op some xsd double^c

declustering potential^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000875

has super-classes: source attribute^c; has_units^op some u o 0000218^c; has value type^op some xsd float^c

deconvoluted inverse reduced ion mobility array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003155

has super-classes: ion mobility array^c; has_units^op some volt-second per square centimeter^c; has value type^op some xsd float^c

deconvoluted ion mobility array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003154

has super-classes: ion mobility array^c; has_units^op some u o 0000010^c; has_units^op some u o 0000028^c; has value type^op some xsd float^c

deconvoluted ion mobility drift time array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003156

has super-classes: ion mobility array^c; has_units^op some u o 0000010^c; has_units^op some u o 0000028^c; has value type^op some xsd float^c

Decoy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000011

has super-classes: PEFF file header section term^c; has value type^op some xsd boolean^c

decoy DB accession regexp^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001283

has super-classes: decoy DB details^c; has value type^op some xsd string^c

decoy DB derived from^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001284

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

has super-classes: decoy DB details^c

decoy DB details^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001450

has super-classes: search database details^c
has sub-classes: DB composition only decoy^c, DB composition target+decoy^c, decoy DB accession regexp^c, decoy DB derived from^c, decoy DB generation algorithm^c, decoy DB type randomized^c, decoy DB type reverse^c, decoy DB type shuffle^c

decoy DB from EST^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001295

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from IPI_arabidopsis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001294

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from IPI_chicken^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001298

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from IPI_cow^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001299

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from IPI_human^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001300

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from IPI_mouse^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001293

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from IPI_rat^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001292

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from IPI_zebrafish^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001296

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from nr^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001291

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from UniProtKB/Swiss-Prot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001297

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from UniProtKB/TrEMBL^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002061

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB generation algorithm^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001451

has super-classes: decoy DB details^c; has value type^op some xsd string^c

decoy DB type randomized^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001196

has super-classes: decoy DB details^c

decoy DB type reverse^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001195

has super-classes: decoy DB details^c

decoy DB type shuffle^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001452

has super-classes: decoy DB details^c

decoy peptide^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002217

has super-classes: peptide sequence-level identification attribute^c; has value type^op some xsd boolean^c

decoy spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003192

has super-classes: spectrum origin type^c
has sub-classes: precursor shift decoy spectrum^c, shuffle-and-reposition decoy spectrum^c, unnatural peptidoform decoy spectrum^c, unrelated species decoy spectrum^c

decoy SRM transition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002008

has super-classes: SRM transition type^c

decreasing m/z scan^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000092

has super-classes: scan direction^c

deisotoping^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000033

has super-classes: data processing action^c

delayed extraction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000246

has super-classes: ion optics type^c

delta M^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001976

has super-classes: spectrum identification result details^c; has_units^op some u o 0000166^c; has_units^op some u o 0000187^c; has_units^op some u o 0000221^c; has value type^op some xsd double^c

delta m/z^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001975

has super-classes: spectrum identification result details^c; has_units^op some u o 0000166^c; has_units^op some u o 0000187^c; has_units^op some u o 0000221^c; has value type^op some xsd double^c

DELTA plusAdvantage^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000153

has super-classes: Thermo Finnigan instrument model^c

DELTAplusXP^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000154

has super-classes: Thermo Finnigan instrument model^c

demultiplexed spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003075

has super-classes: spectrum origin type^c

denominator data type attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002152

has super-classes: quantification object attribute^c

Density^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C45781

has super-classes: Characteristic^c

deoxyribonucleotide^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003038

has super-classes: small molecule^c

desorption electrospray ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002011

has super-classes: atmospheric pressure ionization^c

desorption ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000247

has super-classes: ionization type^c
has sub-classes: desorption/ionization on silicon^c, field desorption^c, laser desorption ionization^c, matrix-assisted laser desorption ionization^c, surface-assisted laser desorption ionization^c

desorption/ionization on silicon^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000387

has super-classes: desorption ionization^c

detector^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000453

has super-classes: part_of^op some instrument^c

detector acquisition mode^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000027

has super-classes: part_of^op some detector^c
has sub-classes: analog-digital converter^c, pulse counting^c, time-digital converter^c, transient recorder^c

detector attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000481

has super-classes: part_of^op some detector^c
has sub-classes: detector potential^c, detector resolution^c, sampling frequency^c

detector potential^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002273

has super-classes: detector attribute^c; has_units^op some u o 0000218^c; has value type^op some xsd float^c

detector resolution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000028

has super-classes: detector attribute^c; has value type^op some xsd float^c

detector type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000026

has super-classes: part_of^op some detector^c
has sub-classes: array detector^c, channeltron^c, conversion dynode^c, daly detector^c, dynode^c, electron multiplier^c, faraday cup^c, fluorescence detector^c, focal plane collector^c, inductive detector^c, ion-to-photon detector^c, multi-collector^c, photomultiplier^c, point collector^c, postacceleration detector^c

DFS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000640

has super-classes: Thermo Scientific instrument model^c

DIA-NN^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003253

has super-classes: quantitation software name^c; analysis software^c

diagnostic ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000360

This child of the former purgatory term ion chemical type was made obsolete.

DiART quantitation analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002761

has super-classes: isobaric label quantitation analysis^c

DiART reagent^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002771

has super-classes: sample label^c
has sub-classes: DiART reagent 114^c, DiART reagent 115^c, DiART reagent 116^c, DiART reagent 117^c, DiART reagent 118^c, DiART reagent 119^c

DiART reagent 114^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002772

has super-classes: DiART reagent^c

DiART reagent 115^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002773

has super-classes: DiART reagent^c

DiART reagent 116^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002774

has super-classes: DiART reagent^c

DiART reagent 117^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002775

has super-classes: DiART reagent^c

DiART reagent 118^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002776

has super-classes: DiART reagent^c

DiART reagent 119^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002777

has super-classes: DiART reagent^c

Digital Object Identifier (DOI)^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001922

has super-classes: external reference identifier^c; has regexp^op some regular expression for a digital object identifier (DOI)^c; has value type^op some xsd string^c

DiLeu quantitation analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002762

has super-classes: isobaric label quantitation analysis^c

DiLeu reagent^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002778

has super-classes: sample label^c
has sub-classes: DiLeu reagent 115^c, DiLeu reagent 116^c, DiLeu reagent 117^c, DiLeu reagent 118^c

DiLeu reagent 115^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002779

has super-classes: DiLeu reagent^c

DiLeu reagent 116^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002780

has super-classes: DiLeu reagent^c

DiLeu reagent 117^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002781

has super-classes: DiLeu reagent^c

DiLeu reagent 118^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002782

has super-classes: DiLeu reagent^c

dilution series, concentration X^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001816

has super-classes: study variable attribute^c; has value type^op some xsd double^c

dimeric ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000361

This child of the former purgatory term ion chemical type was made obsolete.

Dionex instrument model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000491

has super-classes: instrument model^c

direct inlet^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000056

has super-classes: inlet type^c

direct insertion probe^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000248

has super-classes: inlet type^c

direct liquid introduction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000249

has super-classes: inlet type^c

DirecTag^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001586

has super-classes: analysis software^c

Discoverer MSF format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001564

has super-classes: intermediate analysis format^c

dissociation method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000044

has super-classes: part_of^op some precursor activation^c
has sub-classes: LIFT^c, blackbody infrared radiative dissociation^c, collision-induced dissociation^c, combined dissociation method^c, electron capture dissociation^c, electron transfer dissociation^c, in-source collision-induced dissociation^c, low-energy collision-induced dissociation^c, negative electron transfer dissociation^c, photodissociation^c, plasma desorption^c, post-source decay^c, pulsed q dissociation^c, surface-induced dissociation^c, sustained off-resonance irradiation^c

dissociation of full mass range^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003216

has super-classes: mass spectrometry acquisition method aspect^c
has sub-classes: data independent acquisition from dissociation of full mass range^c, data independent acquisition from dissociation of full mass range after ion mobility separation^c

dissociation of scanning quadrupole across a specified mass range^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003217

has super-classes: mass spectrometry acquisition method aspect^c
has sub-classes: data independent acquisition from dissociation of scanning quadrupole across mass range^c

dissociation of sequential mass ranges^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003218

has super-classes: mass spectrometry acquisition method aspect^c
has sub-classes: data independent acquisition from dissociation of sequential mass ranges^c, data independent acquisition from dissociation of sequential mass ranges after ion mobility separation^c

dissociative ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000388

has super-classes: ionization type^c

distinct peptide sequences^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001097

has super-classes: protein-level identification attribute^c; has value type^op some xsd non negative integer^c

distinct peptide-level combined FDRScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002361

has super-classes: search engine specific peptide sequence-level identification statistic^c; search engine specific score for proteins^c; has_domain^op some value greater than zero but less than or equal to one^c; has value type^op some xsd double^c

distinct peptide-level FDRScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002360

has super-classes: search engine specific peptide sequence-level identification statistic^c; search engine specific score for proteins^c; has_domain^op some value greater than zero but less than or equal to one^c; has value type^op some xsd double^c

distinct peptide-level q-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001868

has super-classes: peptide-level statistical threshold^c; has_domain^op some value between 0 and 1 inclusive^c; has value type^op some xsd double^c

distonic ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000362

This child of the former purgatory term ion chemical type was made obsolete.

distributed normalized spectral abundance factor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002548

has super-classes: quantification datatype^c

DisulfideBond^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001031

has super-classes: PEFF file sequence entry term^c; has value type^op some xsd string^c

Domain^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001025

has super-classes: PEFF file sequence entry term^c; has value type^op some xsd string^c

domain range^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002304

has super-classes: part_of^op some Proteomics Standards Initiative Mass Spectrometry Vocabularies^c
has sub-classes: value between 0 and 1 inclusive^c, value between 0 and 1000 inclusive^c, value greater than zero^c, value greater than zero but less than or equal to one^c

double-focusing mass spectrometer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000289

This child of the former purgatory term mass spectrometer was made obsolete.

dpControl^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000720

has super-classes: Bruker software^c; acquisition software^c

dried droplet MALDI matrix preparation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000836

has super-classes: matrix application type^c

DSQ^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000634

has super-classes: Thermo Finnigan instrument model^c

DSQ II^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000641

has super-classes: Thermo Scientific instrument model^c

DTA format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000613

has super-classes: mass spectrometer file format^c

DTASelect^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002598

has super-classes: analysis software^c

DTASelect format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001464

has super-classes: intermediate analysis format^c

Duration^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25330

has super-classes: Temporal Qualifier^c

dwell time^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000502

has super-classes: scan attribute^c; has_units^op some u o 0000010^c; has_units^op some u o 0000031^c; has value type^op some xsd float^c

dye-laser^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000852

has super-classes: laser type^c

dynamic mass spectrometry^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000306

This child of the former purgatory term mass spectrometer was made obsolete.

dynode^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000347

has super-classes: detector type^c

e/2 mass spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000328

has super-classes: mass spectrum^c

eight sample run^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001822

has super-classes: raw file attribute^c

einzel lens^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000307

has super-classes: ion optics type^c

electric field strength^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000308

has super-classes: ion optics attribute^c; has_units^op some u o 0000268^c; has value type^op some xsd float^c

electromagnetic radiation chromatogram^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000811

has super-classes: data file content^c; chromatogram type^c
has sub-classes: absorption chromatogram^c, emission chromatogram^c

electromagnetic radiation spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000804

has super-classes: data file content^c; spectrum type^c

electron affinity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000213

This child of the former purgatory term ion attribute was made obsolete.

has super-classes: has value type^op some xsd float^c

electron capture dissociation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000250

has super-classes: dissociation method^c

electron energy obsolete^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000214

This former purgatory term was made obsolete.

electron ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000389

has super-classes: ionization type^c

electron multiplier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000253

has super-classes: detector type^c
has sub-classes: electron multiplier tube^c

electron multiplier tube^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000111

has super-classes: electron multiplier^c

electron transfer dissociation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000598

has super-classes: dissociation method^c

electron volt^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000137

This term was made obsolete because it was redundant with the Unit Ontology term electron volt (UO:0000266).

electron-induced excitation in organics^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000252

This child of the former purgatory term ion reaction was made obsolete.

electron-transfer/collision-induced dissociation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003182

has super-classes: combined dissociation method^c

electron-transfer/higher-energy collision dissociation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002631

has super-classes: combined dissociation method^c

Electronic Ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000072

This term was made obsolete because it was replaced by electron ionization (MS:1000389).

electrospray inlet^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000057

has super-classes: inlet type^c
has sub-classes: nanospray inlet^c

electrospray ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000073

has super-classes: ionization type^c
has sub-classes: microelectrospray^c, nanoelectrospray^c

electrospray supply type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001941

has super-classes: part_of^op some source^c
has sub-classes: fed supply electrospray^c, static supply electrospray^c

electrostatic energy analyzer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000254

has super-classes: mass analyzer type^c

Element 2^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000646

has super-classes: Thermo Scientific instrument model^c

Element GD^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000647

has super-classes: Thermo Scientific instrument model^c

Element XR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000645

has super-classes: Thermo Scientific instrument model^c

ELEMENT2^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000155

This former purgatory term was made obsolete.

elution time^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000826

has super-classes: scan attribute^c; has_units^op some u o 0000010^c; has_units^op some u o 0000031^c; has value type^op some xsd float^c

embl em^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001352

has super-classes: database file formats^c

emission chromatogram^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000813

has super-classes: electromagnetic radiation chromatogram^c

emission spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000805

has super-classes: data file content^c; spectrum type^c

emPAI value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001905

has super-classes: protein-level quantification datatype^c; has value type^op some xsd double^c

empirical formula^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000865

has super-classes: chemical formula^c; has value type^op some xsd string^c

Empower^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001795

has super-classes: Waters software^c; analysis software^c; data processing software^c

emulsion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000047

has super-classes: sample state^c

energy unit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000046

This term was made obsolete because it was redundant with the Unit Ontology term energy unit (UO:0000111).

has super-classes: u o 0000000

enhanced multiply charged spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000789

has super-classes: MS1 spectrum^c

enhanced resolution scan^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000791

This term was made obsolete because it was merged with zoom scan (MS:1000497).

enium ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000363

This child of the former purgatory term ion chemical type was made obsolete.

environment metric^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000024

has super-classes: QC metric^c

EPIFANY^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003118

has super-classes: TOPP software^c; analysis software^c

EPIFANY:Protein posterior probability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003119

has super-classes: search engine specific score for proteins^c; has value type^op some xsd double^c

error on absolute quantity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001138

has super-classes: quantification datatype^c; has value type^op some xsd double^c

error on peptide area^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001131

has super-classes: peptide-level quantification datatype^c; has value type^op some xsd double^c

error on peptide ratio^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001133

has super-classes: peptide-level quantification datatype^c; has value type^op some xsd double^c

error on protein ratio^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001135

has super-classes: protein-level quantification datatype^c; has value type^op some xsd double^c

esquire 4000^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000156

has super-classes: Bruker Daltonics esquire series^c

esquire 6000^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000157

has super-classes: Bruker Daltonics esquire series^c

esquireControl^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000721

has super-classes: Bruker software^c; acquisition software^c

EV^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001008

has super-classes: PEFF file sequence entry term^c; has value type^op some xsd string^c

even-electron ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000251

This child of the former purgatory term ion chemical type was made obsolete.

EVOQ Elite^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002297

has super-classes: Bruker Daltonics EVOQ series^c

EVOQ Qube^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002298

has super-classes: Bruker Daltonics EVOQ series^c

exact mass^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000215

This child of the former purgatory term ion attribute was made obsolete.

has super-classes: has_units^op some u o 0000002^c; has value type^op some xsd float^c

Exactive^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000649

has super-classes: Thermo Scientific instrument model^c

Exactive Plus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002526

has super-classes: Thermo Scientific instrument model^c

excludes supersede includes^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000921

has super-classes: target inclusion exclusion priority^c

Expect value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001192

has super-classes: peptide sequence-level identification statistic^c; single protein identification statistic^c; has value type^op some xsd double^c

Experiment additional parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002844

has super-classes: spectrum generation information^c
has sub-classes: Accepted manuscript^c, Associated file URI^c, Data derived from previous dataset^c, Dataset FTP location^c, Dataset with its publication pending^c, Dataset with no associated published manuscript^c, Experimental information has been refined since this experiment was originally made publicly available^c, No PTMs are included in the dataset^c, Non peer-reviewed dataset^c, Original data^c, Peer-reviewed dataset^c, ProteomeCentral dataset URI^c, Reference^c, Reprocessed complete dataset^c, Reprocessed subset dataset^c, Supported dataset by repository^c, Unsupported dataset by repository^c, supported by repository but incomplete data and/or metadata^c

experiment name^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002120

has super-classes: quantification object attribute^c

experimental condition 'case'^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001810

has super-classes: study variable attribute^c

experimental condition 'control'^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001811

has super-classes: study variable attribute^c

experimental condition 'disease'^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001812

has super-classes: study variable attribute^c

experimental condition 'healthy'^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001813

has super-classes: study variable attribute^c

Experimental information has been refined since this experiment was originally made publicly available^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002867

has super-classes: Experiment additional parameter^c

experimental precursor monoisotopic m/z^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003208

has super-classes: ion selection attribute^c; has_units^op some m/z^c; has value type^op some xsd float^c

explorer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000158

has super-classes: IonSpec instrument model^c

exponential^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000094

has super-classes: scan law^c

external array length^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002843

has super-classes: external reference data^c; has_units^op some u o 0000189^c; has value type^op some xsd non negative integer^c

external HDF5 dataset^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002841

has super-classes: external reference data^c; has value type^op some xsd string^c

external offset^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002842

has super-classes: external reference data^c; has_units^op some u o 0000189^c; has value type^op some xsd non negative integer^c

external reference data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002840

has super-classes: part_of^op some Proteomics Standards Initiative Mass Spectrometry Vocabularies^c
has sub-classes: external HDF5 dataset^c, external array length^c, external offset^c, external reference identifier^c, external reference keyword^c

external reference identifier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000878

has super-classes: external reference data^c
has sub-classes: CPTAC accession number^c, Digital Object Identifier (DOI)^c, MassIVE dataset URI^c, MassIVE dataset identifier^c, PASSEL experiment URI^c, PASSEL transition group browser URI^c, PRIDE experiment URI^c, PRIDE project URI^c, Panorama Public dataset URI^c, Panorama Public dataset identifier^c, PeptideAtlas dataset URI^c, ProteomeXchange accession number^c, ProteomeXchange accession number version number^c, ProteomeXchange dataset identifier reanalysis number^c, ProteomeXchange project tag^c, PubMed identifier^c, Tranche file hash^c, Tranche project hash^c, iProX dataset URI^c, iProX dataset identifier^c, jPOST dataset URI^c, jPOST dataset identifier^c

external reference keyword^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001923

has super-classes: external reference data^c; has value type^op some xsd string^c
has sub-classes: curator keyword^c, journal article keyword^c, submitter keyword^c

FAIMS compensation voltage^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001581

has super-classes: ion mobility attribute^c; has_units^op some u o 0000218^c; has value type^op some xsd double^c

false localization rate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002380

has super-classes: spectrum identification result details^c; has value type^op some xsd double^c

family member protein^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001592

has super-classes: protein group or subset relationship^c; has value type^op some xsd string^c

faraday cup^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000112

has super-classes: detector type^c

fast atom bombardment ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000074

has super-classes: ionization type^c

fast evaporation MALDI sample preparation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001989

has super-classes: matrix application type^c

fast ion bombardment^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000446

has super-classes: ionization type^c

FASTA format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001348

has super-classes: database file formats^c

fastest frequency for MS level 1 collection^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000065

Spectrum acquisition frequency can be used to gauge the suitability of used instrument settings for the sample content used.

has super-classes: single value^c; has_metric_category^op some ID free metric^c; has_metric_category^op some single run based metric^c; has_metric_category^op some MS1 metric^c; has_units^op some u o 0000106^c; has value type^op some xsd float^c

fastest frequency for MS level 2 collection^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000066

Spectrum acquisition frequency can be used to gauge the suitability of used instrument settings for the sample content used.

has super-classes: single value^c; has_metric_category^op some ID free metric^c; has_metric_category^op some single run based metric^c; has_metric_category^op some MS2 metric^c; has_units^op some u o 0000106^c; has value type^op some xsd float^c

FDRScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001874

This term was made obsolete because it was split into the more specific terms for PSM-level FDRScore (1002355), distinct peptide-level FDRScore (MS:1002360), protein-level FDRScore (MS:1002365) and protein group-level FDRScore (MS:1002374).

has super-classes: PSM-level search engine specific statistic^c; search engine specific score^c; has value type^op some xsd double^c

FDRScore for proteins^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002365

has super-classes: search engine specific score for proteins^c; has_domain^op some value greater than zero but less than or equal to one^c; has value type^op some xsd double^c

feature attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001828

has super-classes: quantification object attribute^c
has sub-classes: SRM transition ID^c, spectral count feature^c

feature format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002900

has super-classes: mass spectrometer file format^c

feature list attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001825

has super-classes: quantification object attribute^c
has sub-classes: counts reporting^c, mass trace reporting: polygons^c, mass trace reporting: rectangles^c

feature-level quantification datatype^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002735

has super-classes: quantification datatype^c
has sub-classes: LC-MS feature intensity^c, LC-MS feature volume^c, MS1 feature area^c, MS1 feature maximum intensity^c, MaxQuant:feature intensity^c, Progenesis:feature intensity^c, XCMS:area^c, XCMS:intf^c, XCMS:into^c, XCMS:maxo^c, sum of MatchedFeature values^c

featureXML^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002824

has super-classes: OpenMS file format^c

fed supply electrospray^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001943

has super-classes: electrospray supply type^c

field desorption^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000257

has super-classes: desorption ionization^c

field ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000258

has super-classes: ionization type^c

field-free region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000216

has super-classes: ion optics attribute^c

file format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001459

has super-classes: part_of^op some Proteomics Standards Initiative Mass Spectrometry Vocabularies^c
has sub-classes: OpenMS file format^c, chromatograph file format^c, identification file format^c, intermediate analysis format^c, mass spectrometer file format^c, method file format^c, quality control data format^c, quantification file format^c, tab delimited text format^c

file format conversion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000530

has super-classes: data transformation^c
has sub-classes: Conversion to dta^c, Conversion to mzData^c, Conversion to mzML^c, Conversion to mzMLb^c, Conversion to mzXML^c

FileConverter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000756

has super-classes: TOPP software^c

FileFilter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000757

has super-classes: TOPP software^c

FileMerger^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000758

has super-classes: TOPP software^c

filter string^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000512

has super-classes: scan attribute^c; has value type^op some xsd string^c

final MS exponent^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000024

has super-classes: mass analyzer attribute^c; has value type^op some xsd int^c

final PSM list^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002439

has super-classes: spectrum identification list result details^c

FindPairs^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002063

has super-classes: quantitation software name^c

Finnigan MAT instrument model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000493

has super-classes: Thermo Fisher Scientific instrument model^c
has sub-classes: MAT253^c, MAT900XP^c, MAT900XP Trap^c, MAT95XP^c, MAT95XP Trap^c, SSQ 7000^c, TSQ^c, TSQ 7000^c

first author^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002034

has super-classes: contact role^c

first column elution time^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002082

has super-classes: scan attribute^c; has_units^op some u o 0000010^c; has_units^op some u o 0000031^c; has value type^op some xsd float^c

first stability region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000309

has super-classes: ion optics type^c

Fixed modification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003021

has super-classes: modification parameters^c; named element in mzIdentML^c

FlexAnalysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000535

has super-classes: Bruker software^c; analysis software^c; data processing software^c

FlexControl^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000540

has super-classes: Bruker software^c; acquisition software^c

flexImaging^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000722

has super-classes: Bruker software^c; analysis software^c; data processing software^c

flow injection analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000058

has super-classes: inlet type^c

flow rate array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000820

has super-classes: binary data array^c; has_units^op some u o 0000271^c

flow rate chromatogram^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003020

has super-classes: chromatogram type^c

flowing afterglow^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000255

has super-classes: ionization type^c

fluorescence detector^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002308

has super-classes: detector type^c
has sub-classes: Acquity UPLC FLR^c

focal plane array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000113

has super-classes: focal plane collector^c

focal plane collector^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000348

has super-classes: detector type^c
has sub-classes: focal plane array^c

focus diameter x^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000844

has super-classes: laser attribute^c; has_units^op some u o 0000017^c; has value type^op some xsd float^c

focus diameter y^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000845

has super-classes: laser attribute^c; has_units^op some u o 0000017^c; has value type^op some xsd float^c

Formic_acid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001308

has super-classes: cleavage agent name^c; has regexp^op some ((?<=D))|((?=D))^c

four sample run^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001821

has super-classes: raw file attribute^c

fourier transform ion cyclotron resonance mass spectrometer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000079

has super-classes: mass analyzer type^c

fraction identifier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000858

has super-classes: run attribute^c; has value type^op some xsd string^c

frag: a ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001229

has super-classes: fragmentation ion type^c

frag: a ion - H2O^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001234

has super-classes: fragmentation ion type^c

frag: a ion - NH3^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001235

has super-classes: fragmentation ion type^c

frag: b ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001224

has super-classes: fragmentation ion type^c

frag: b ion - H2O^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001222

has super-classes: fragmentation ion type^c

frag: b ion - NH3^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001232

has super-classes: fragmentation ion type^c

frag: c ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001231

has super-classes: fragmentation ion type^c

frag: c ion - H2O^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001515

has super-classes: fragmentation ion type^c

frag: c ion - NH3^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001516

has super-classes: fragmentation ion type^c

frag: d ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001236

has super-classes: fragmentation ion type^c

frag: immonium ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001239

has super-classes: fragmentation ion type^c

frag: internal ya ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001366

has super-classes: fragmentation ion type^c

frag: internal yb ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001365

has super-classes: fragmentation ion type^c

frag: isobaric label ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002695

has super-classes: fragmentation ion type^c

frag: iTRAQ 4plex reporter ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002668

has super-classes: fragmentation ion type^c; has value type^op some xsd int^c

frag: iTRAQ 8plex reporter ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002669

has super-classes: fragmentation ion type^c; has value type^op some xsd int^c

frag: precursor ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001523

has super-classes: fragmentation ion type^c

frag: precursor ion - H2O^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001521

has super-classes: fragmentation ion type^c

frag: precursor ion - NH3^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001522

has super-classes: fragmentation ion type^c

frag: TMT ETD reporter ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002671

has super-classes: fragmentation ion type^c; has value type^op some xsd string^c

frag: TMT reporter ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002670

has super-classes: fragmentation ion type^c; has value type^op some xsd string^c

frag: v ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001237

has super-classes: fragmentation ion type^c

frag: w ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001238

has super-classes: fragmentation ion type^c

frag: x ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001228

has super-classes: fragmentation ion type^c

frag: x ion - H2O^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001519

has super-classes: fragmentation ion type^c

frag: x ion - NH3^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001520

has super-classes: fragmentation ion type^c

frag: y ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001220

has super-classes: fragmentation ion type^c

frag: y ion - H2O^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001223

has super-classes: fragmentation ion type^c

frag: y ion - NH3^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001233

has super-classes: fragmentation ion type^c

frag: z ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001230

has super-classes: fragmentation ion type^c

frag: z ion - H2O^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001517

has super-classes: fragmentation ion type^c

frag: z ion - NH3^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001518

has super-classes: fragmentation ion type^c

frag: z+1 ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001367

has super-classes: fragmentation ion type^c

frag: z+2 ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001368

has super-classes: fragmentation ion type^c

fragment ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000364

This term was made obsolete because it was replaced by product ion (MS:1000342).

fragment mass type average^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001255

has super-classes: mass type settings^c

fragment mass type mono^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001256

has super-classes: mass type settings^c

fragment neutral loss^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001524

has super-classes: peptide modification details^c; has_units^op some u o 0000221^c; has value type^op some xsd double^c

fragmentation ion type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002307

has super-classes: product ion attribute^c
has sub-classes: frag: TMT ETD reporter ion^c, frag: TMT reporter ion^c, frag: a ion^c, frag: a ion - H2O^c, frag: a ion - NH3^c, frag: b ion^c, frag: b ion - H2O^c, frag: b ion - NH3^c, frag: c ion^c, frag: c ion - H2O^c, frag: c ion - NH3^c, frag: d ion^c, frag: iTRAQ 4plex reporter ion^c, frag: iTRAQ 8plex reporter ion^c, frag: immonium ion^c, frag: internal ya ion^c, frag: internal yb ion^c, frag: isobaric label ion^c, frag: precursor ion^c, frag: precursor ion - H2O^c, frag: precursor ion - NH3^c, frag: v ion^c, frag: w ion^c, frag: x ion^c, frag: x ion - H2O^c, frag: x ion - NH3^c, frag: y ion^c, frag: y ion - H2O^c, frag: y ion - NH3^c, frag: z ion^c, frag: z ion - H2O^c, frag: z ion - NH3^c, frag: z+1 ion^c, frag: z+2 ion^c, secondary isotope peak^c

fragmentation score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002890

has super-classes: small molecule confidence measure^c; has value type^op some xsd float^c

free electron laser^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000853

has super-classes: laser type^c

fringing field^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000310

has super-classes: ion optics type^c

full scan^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000498

This former purgatory term was made obsolete.

full width at half-maximum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000086

has super-classes: resolution measurement method^c

gas chromatography separation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002272

has super-classes: chromatography separation^c

gas laser^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000850

has super-classes: laser type^c

gaseous sample state^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000048

has super-classes: sample state^c

Gaussian smoothing^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000784

has super-classes: smoothing^c

GC IsoLink^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000648

has super-classes: Thermo Scientific instrument model^c

GC Quantum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000558

has super-classes: Thermo Finnigan instrument model^c

GCMS-QP2010SE^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003152

has super-classes: Shimadzu Scientific Instruments instrument model^c

GCT^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000159

has super-classes: Waters instrument model^c

GCT Premier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001770

has super-classes: Waters instrument model^c

Gel image file URI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002860

has super-classes: Associated file URI^c; has value type^op some xsd string^c

gene name^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000934

has super-classes: protein attribute^c; has value type^op some xsd string^c

GeneralComment^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000021

has super-classes: PEFF file header section term^c; has value type^op some xsd string^c

generic experimental condition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001814

has super-classes: study variable attribute^c; has value type^op some xsd string^c

Genespring MS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000684

has super-classes: Agilent software^c; analysis software^c; data processing software^c

GENOLINK^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000723

has super-classes: Bruker software^c

genome reference version^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002644

has super-classes: proteogenomics attribute^c; has value type^op some xsd string^c

GenoTools^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000724

has super-classes: Bruker software^c

global FLR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002691

has super-classes: PTM localization result list statistic^c

glow discharge ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000259

has super-classes: ionization type^c

glutamyl endopeptidase^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001917

has super-classes: cleavage agent name^c; has regexp^op some (?<=[^E]E)^c

glycan ion interpretation format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003106

has super-classes: ion interpretation format^c

glyco-TMT quantitation analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002757

has super-classes: isobaric label quantitation analysis^c

GName^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001005

has super-classes: PEFF file sequence entry term^c; has value type^op some xsd string^c

GO^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001018

has super-classes: PEFF file sequence entry term^c; has value type^op some xsd string^c

GPS Explorer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000661

has super-classes: SCIEX software^c; acquisition software^c; analysis software^c; data processing software^c

Greazy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002970

has super-classes: data processing software^c; lipidomics analysis software^c

greylag^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001461

has super-classes: analysis software^c

group member with undefined relationship OR ortholog protein^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001593

has super-classes: protein group or subset relationship^c

group PSMs by sequence^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002496

has super-classes: identification parameter^c

group PSMs by sequence with modifications^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002497

has super-classes: identification parameter^c

group PSMs by sequence with modifications and charge^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002498

has super-classes: identification parameter^c

group representative^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002403

has super-classes: protein group or subset relationship^c

H-PINS retention time normalization standard^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000902

has super-classes: retention time normalization standard^c

H-Score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001986

has super-classes: PTM localization PSM-level statistic^c; has regexp^op some regular expression for modification localization scoring^c; has value type^op some xsd string^c

H-Score threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002559

has super-classes: PTM localization score threshold^c; has value type^op some xsd double^c

H2O neutral loss^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002455

This term was obsoleted because it should be replaced by MS:1000336 with value H2O.

has super-classes: neutral loss^c; ion series considered in search^c

H3PO4 neutral loss^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002457

This term was obsoleted because it should be replaced by MS:1000336 with value H3PO4.

has super-classes: neutral loss^c; ion series considered in search^c

HasAnnotationIdentifiers^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000024

has super-classes: PEFF file header section term^c; has value type^op some xsd string^c

HCT^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000160

has super-classes: Bruker Daltonics HCT Series^c

HCTcontrol^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000725

has super-classes: Bruker software^c; acquisition software^c

HCTplus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000161

has super-classes: Bruker Daltonics HCT Series^c

HCTultra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000698

has super-classes: Bruker Daltonics HCT Series^c

HCTultra ETD II^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000700

has super-classes: Bruker Daltonics HCT Series^c

HCTultra PTM^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000699

has super-classes: Bruker Daltonics HCT Series^c

heavy labeled peptidoform^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000891

has super-classes: peptidoform labeling state^c

height peak picking^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000802

has super-classes: peak picking^c

heterolytic cleavage^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000420

This child of the former purgatory term ion reaction was made obsolete.

high complexity QC sample metric^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000074

has super-classes: QC sample metric^c
has sub-classes: QC2 sample metric^c

high energy collision^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000421

This child of the former purgatory term ion reaction was made obsolete.

high intensity data point removal^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000746

has super-classes: data filtering^c

high intensity threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000631

has super-classes: data processing parameter^c; has_units^op some number of detector counts^c; has_units^op some percent of base peak^c; has_units^op some counts per second^c; has_units^op some percent of base peak times 100^c; has_units^op some u o 0000269^c; has value type^op some xsd float^c

high-field asymmetric waveform ion mobility spectrometry^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000256

This child of the former purgatory term mass spectrometer was made obsolete.

higher energy beam-type collision-induced dissociation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002481

has super-classes: beam-type collision-induced dissociation^c

higher score better^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002108

has super-classes: part_of^op some search engine specific score^c

highest observed m/z^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000527

has super-classes: chromatogram attribute^c; spectrum property^c; has_units^op some m/z^c; has value type^op some xsd float^c

highest observed wavelength^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000618

has super-classes: chromatogram attribute^c; spectrum property^c; has_units^op some u o 0000018^c; has value type^op some xsd float^c

HiRes ESI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000162

has super-classes: IonSpec instrument model^c

HiRes MALDI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000163

has super-classes: IonSpec instrument model^c

Hitachi instrument model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000488

has super-classes: instrument model^c

homolytic cleavage^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000423

This child of the former purgatory term ion reaction was made obsolete.

hr-ms compound identification confidence level^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002955

has super-classes: small molecule identification attribute^c; has value type^op some xsd string^c

hybrid mass spectrometer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000290

This child of the former purgatory term mass spectrometer was made obsolete.

hydrazideTMT quantitation analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002759

has super-classes: isobaric label quantitation analysis^c

hydrogen/deuterium exchange^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000424

This child of the former purgatory term ion reaction was made obsolete.

HyStar^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000817

has super-classes: Bruker software^c

i3tms^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003013

has super-classes: analysis software^c

ICAT heavy reagent^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002604

has super-classes: ICAT reagent^c

ICAT light reagent^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002605

has super-classes: ICAT reagent^c

ICAT reagent^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002603

has super-classes: sample label^c
has sub-classes: ICAT heavy reagent^c, ICAT light reagent^c

ICPL reagent^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002606

has super-classes: sample label^c
has sub-classes: ICPL reagent 0^c, ICPL reagent 10^c, ICPL reagent 4^c, ICPL reagent 6^c

ICPL reagent 0^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002607

has super-classes: ICPL reagent^c

ICPL reagent 10^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002610

has super-classes: ICPL reagent^c

ICPL reagent 4^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002608

has super-classes: ICPL reagent^c

ICPL reagent 6^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002609

has super-classes: ICPL reagent^c

ID^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001026

has super-classes: PEFF file sequence entry term^c; has value type^op some xsd string^c

ID based metric^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000008

has super-classes: QC metric category^c

ID free metric^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000009

has super-classes: QC metric category^c

identification attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002693

has super-classes: analysis attribute^c
has sub-classes: result list attribute^c, single identification result attribute^c

identification file attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002127

has super-classes: quantification object attribute^c

identification file format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002130

has super-classes: file format^c
has sub-classes: PRIDE XML^c

identification parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002658

has super-classes: part_of^op some spectrum interpretation^c
has sub-classes: group PSMs by sequence^c, group PSMs by sequence with modifications^c, group PSMs by sequence with modifications and charge^c

IdentiPy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002987

has super-classes: analysis software^c

IdentiPy:hyperscore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002989

has super-classes: search engine specific score^c; has_order^op some higher score better^c; has value type^op some xsd double^c

IdentiPy:RHNS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002988

has super-classes: search engine specific score^c; has_order^op some higher score better^c; has value type^op some xsd double^c

IdentityE Score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001569

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

IdentityE XML format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001565

has super-classes: intermediate analysis format^c

idXML^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002823

has super-classes: OpenMS file format^c

iMonDB^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003165

has super-classes: analysis software^c

impact^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002077

has super-classes: Bruker Daltonics micrOTOF series^c

impact angle^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000849

has super-classes: laser attribute^c; has_units^op some u o 0000185^c; has value type^op some xsd float^c

impact HD^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002667

has super-classes: Bruker Daltonics micrOTOF series^c

impact II^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002666

has super-classes: Bruker Daltonics micrOTOF series^c

in-gel digestion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002985

has super-classes: sample preparation^c

in-solution digestion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002986

has super-classes: sample preparation^c

in-source collision-induced dissociation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001880

has super-classes: dissociation method^c

InChIKey^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002894

has super-classes: spectrum identification result details^c; has value type^op some xsd string^c

includes supersede excludes^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000920

has super-classes: target inclusion exclusion priority^c

inclusive high intensity threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000788

has super-classes: data processing parameter^c; has_units^op some number of detector counts^c; has_units^op some percent of base peak^c; has_units^op some counts per second^c; has_units^op some percent of base peak times 100^c; has_units^op some u o 0000269^c; has value type^op some xsd float^c

inclusive low intensity threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000787

has super-classes: data processing parameter^c; has_units^op some number of detector counts^c; has_units^op some percent of base peak^c; has_units^op some counts per second^c; has_units^op some percent of base peak times 100^c; has_units^op some u o 0000269^c; has value type^op some xsd float^c

increasing m/z scan^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000093

has super-classes: scan direction^c

inductive detector^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000624

has super-classes: detector type^c

inductively coupled plasma^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000059

has super-classes: inlet type^c

infrared multiphoton dissociation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000262

has super-classes: photodissociation^c

infusion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000060

has super-classes: inlet type^c

initiator methionine^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001035

has super-classes: PEFF molecule processing keyword^c; has regexp^op some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment^c; has value type^op some xsd string^c

inlet attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002039

has super-classes: object attribute^c; part_of^op some source^c
has sub-classes: inlet temperature^c

inlet temperature^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002040

has super-classes: source attribute^c; inlet attribute^c; has_units^op some u o 0000012^c; has_units^op some u o 0000027^c; has value type^op some xsd float^c

inlet type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000007

has super-classes: part_of^op some source^c
has sub-classes: continuous flow fast atom bombardment^c, direct inlet^c, direct insertion probe^c, direct liquid introduction^c, electrospray inlet^c, flow injection analysis^c, inductively coupled plasma^c, infusion^c, jet separator^c, membrane inlet^c, membrane separator^c, moving belt^c, moving wire^c, open split^c, particle beam^c, reservoir^c, septum^c, thermospray inlet^c

instrument^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000463

has super-classes: part_of^op some spectrum generation information^c

instrument additional description^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000454

This former purgatory term was made obsolete.

instrument attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000496

has super-classes: object attribute^c; part_of^op some instrument^c
has sub-classes: customization^c, instrument serial number^c, transmission^c

instrument model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000031

has super-classes: part_of^op some instrument^c
has sub-classes: Agilent instrument model^c, Applied Biosystems instrument model^c, Bruker Daltonics instrument model^c, Dionex instrument model^c, Hitachi instrument model^c, LECO instrument model^c, SCIEX instrument model^c, Shimadzu instrument model^c, Thermo Fisher Scientific instrument model^c, Varian instrument model^c, Waters instrument model^c

instrument serial number^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000529

has super-classes: instrument attribute^c; has value type^op some xsd string^c

instrument specific scan attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002527

has super-classes: scan attribute^c
has sub-classes: synchronous prefilter selection^c

instrument vendor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001269

has super-classes: role type^c; has value type^op some xsd string^c

intensity array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000515

has super-classes: binary data array^c; has_units^op some number of detector counts^c; has_units^op some percent of base peak^c; has_units^op some counts per second^c; has_units^op some percent of base peak times 100^c; has_units^op some u o 0000269^c

intensity normalization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001484

has super-classes: data processing action^c
has sub-classes: area normalization^c

intensity of precursor ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001141

has super-classes: quantification datatype^c; has value type^op some xsd double^c
has sub-classes: precursor apex intensity^c, previous MSn-1 scan precursor intensity^c

intensity unit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000043

has super-classes: u o 0000000
has sub-classes: counts per second^c, number of detector counts^c, percent of base peak^c, percent of base peak times 100^c

interaction score derived from cross-linking^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002664

has super-classes: cross-linking result details^c; has regexp^op some regular expression for interaction scores derived from cross-linking^c; has value type^op some xsd string^c
has sub-classes: protein-pair-level global FDR^c, residue-pair-level global FDR^c

interchannel delay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000880

has super-classes: scan attribute^c; has_units^op some u o 0000010^c; has value type^op some xsd float^c

intermediate analysis format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001040

has super-classes: file format^c
has sub-classes: Andromeda result format^c, Bioworks SRF format^c, DTASelect format^c, Discoverer MSF format^c, IdentityE XML format^c, MS Amanda csv format^c, Mascot DAT format^c, OMSSA csv format^c, OMSSA xml format^c, PIA XML format^c, Phenyx XML format^c, ProteinLynx XML format^c, ProteinScape Gel^c, ProteinScape SearchEvent^c, SEQUEST SQT format^c, SEQUEST out file format^c, SEQUEST out folder^c, SEQUEST summary^c, SpectrumMill directories^c, X!Tandem xml format^c, data stored in database^c, mzIdentML format^c, pepXML format^c, protXML format^c, tab delimited text format^c

intermediate PSM list^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002440

has super-classes: spectrum identification list result details^c

internal peptide reference used^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002515

has super-classes: quantitation software comment or customizations^c; has value type^op some xsd boolean^c

internal protein reference used^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002516

has super-classes: quantitation software comment or customizations^c; has value type^op some xsd boolean^c

internal reference abundance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002517

has super-classes: quantification datatype^c; has value type^op some xsd double^c

InternalCalibration^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000759

has super-classes: TOPP software^c

interpreted spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003077

has super-classes: spectrum^c

interpreted spectrum attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003078

has super-classes: part_of^op some interpreted spectrum^c
has sub-classes: MSn-1 isolation window precursor purity^c, analyte mixture members^c, assigned intensity fraction^c, average m/z deviation^c, ion interpretation format^c, monoisotopic m/z deviation^c, top 20 peak unassigned intensity fraction^c, total unassigned intensity fraction^c

inverse reduced ion mobility^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002815

has super-classes: ion selection attribute^c; ion mobility attribute^c; has_units^op some volt-second per square centimeter^c; has value type^op some xsd float^c

iodoTMT quantitation analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002756

has super-classes: isobaric label quantitation analysis^c

ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002806

has super-classes: molecular entity^c

ion chemical type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000508

This child of the former purgatory term ion was made obsolete.

ion current chromatogram^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000810

has super-classes: data file content^c; chromatogram type^c
has sub-classes: basepeak chromatogram^c, consecutive reaction monitoring chromatogram^c, selected ion current chromatogram^c, selected ion monitoring chromatogram^c, selected reaction monitoring chromatogram^c, total ion current chromatogram^c

ion desolvation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000390

This child of the former purgatory term ion reaction was made obsolete.

ion energy loss spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000425

This former purgatory term was made obsolete.

ion injection time^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000927

has super-classes: scan attribute^c; has_units^op some u o 0000028^c; has value type^op some xsd float^c

ion interpretation format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003103

has super-classes: interpreted spectrum attribute^c
has sub-classes: cross-linked peptide ion interpretation format^c, glycan ion interpretation format^c, lipid ion interpretation format^c, peptide ion interpretation format^c

ion kinetic energy spectrometry^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000260

This child of the former purgatory term mass spectrometer was made obsolete.

ion mobility array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002893

has super-classes: binary data array^c
has sub-classes: deconvoluted inverse reduced ion mobility array^c, deconvoluted ion mobility array^c, deconvoluted ion mobility drift time array^c, mean inverse reduced ion mobility array^c, mean ion mobility array^c, mean ion mobility drift time array^c, raw inverse reduced ion mobility array^c, raw ion mobility array^c, raw ion mobility drift time array^c

ion mobility attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002892

has super-classes: scan attribute^c; PSM-level attribute^c
has sub-classes: FAIMS compensation voltage^c, inverse reduced ion mobility^c, ion mobility drift time^c

ion mobility deconvolution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003222

has super-classes: data processing action^c

ion mobility drift time^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002476

has super-classes: ion selection attribute^c; ion mobility attribute^c; has_units^op some u o 0000028^c; has value type^op some xsd float^c

ion mobility separation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003219

has super-classes: mass spectrometry acquisition method aspect^c
has sub-classes: data independent acquisition from dissociation of full mass range^c, data independent acquisition from dissociation of full mass range after ion mobility separation^c, data independent acquisition from dissociation of sequential mass ranges after ion mobility separation^c

ion mobility spectrometry^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000261

This child of the former purgatory term mass spectrometer was made obsolete.

ion optics^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000462

has super-classes: part_of^op some instrument^c
has sub-classes: ion optics attribute^c, ion optics type^c

ion optics attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000487

has super-classes: ion optics^c
has sub-classes: accelerating voltage^c, electric field strength^c, field-free region^c, space charge effect^c

ion optics type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000597

has super-classes: ion optics^c
has sub-classes: collision quadrupole^c, delayed extraction^c, einzel lens^c, first stability region^c, fringing field^c, kinetic energy analyzer^c, magnetic deflection^c, reflectron^c, selected ion flow tube^c, static field^c, time lag focusing^c

ion property^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000507

has super-classes: part_of^op some ion^c
has sub-classes: charge state^c

ion reaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000437

This child of the former purgatory term ion was made obsolete.

ion role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000506

This child of the former purgatory term ion was made obsolete.

ion selection attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000455

has super-classes: object attribute^c; part_of^op some spectrum^c
has sub-classes: SRM transition attribute^c, charge state^c, experimental precursor monoisotopic m/z^c, inverse reduced ion mobility^c, ion mobility drift time^c, peak intensity^c, peak intensity rank^c, peak targeting suitability rank^c, possible charge state^c, selected ion m/z^c, selected precursor m/z^c

ion series considered in search^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002473

has super-classes: search input details^c
has sub-classes: H2O neutral loss^c, H3PO4 neutral loss^c, NH3 neutral loss^c, param: a ion^c, param: b ion^c, param: c ion^c, param: d ion^c, param: immonium ion^c, param: internal ya ion^c, param: internal yb ion^c, param: v ion^c, param: w ion^c, param: x ion^c, param: y ion^c, param: z ion^c, param: z+1 ion^c, param: z+2 ion^c

ion source metric^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000020

has super-classes: MS metric^c

ion stability type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002343

This child of the former purgatory term ion was made obsolete.

ion trap^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000264

has super-classes: mass analyzer type^c
has sub-classes: linear ion trap^c, quadrupole ion trap^c

ion-pair formation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000391

This child of the former purgatory term ion reaction was made obsolete.

ion-to-photon detector^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000349

has super-classes: detector type^c

ion/molecule reaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000427

This child of the former purgatory term ion reaction was made obsolete.

ion/neutral complex^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000428

This child of the former purgatory term ion reaction was made obsolete.

ion/neutral species exchange reaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000430

This child of the former purgatory term ion reaction was made obsolete.

ion/neutral species reaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000429

This child of the former purgatory term ion reaction was made obsolete.

ion?^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000365

This former purgatory term was made obsolete.

ionization cross section^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000217

This child of the former purgatory term ion reaction was made obsolete.

ionization efficiency^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000218

This term was made obsolete because it was replaced by ionization efficiency (MS:1000392).

has super-classes: has value type^op some xsd float^c

ionization efficiency^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000392

has super-classes: source attribute^c; has value type^op some xsd float^c

ionization energy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000219

This child of the former purgatory term ion attribute was made obsolete.

has super-classes: has_units^op some u o 0000266^c; has value type^op some xsd float^c

ionization mode^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000009

This term was made obsolete because it was replaced by scan polarity (MS:1000465).

ionization type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000008

has super-classes: part_of^op some source^c
has sub-classes: Negative Ion chemical ionization^c, adiabatic ionization^c, associative ionization^c, atmospheric pressure ionization^c, autodetachment^c, autoionization^c, charge exchange ionization^c, chemi-ionization^c, chemical ionization^c, desorption ionization^c, dissociative ionization^c, electron ionization^c, electrospray ionization^c, fast atom bombardment ionization^c, fast ion bombardment^c, field ionization^c, flowing afterglow^c, glow discharge ionization^c, liquid secondary ionization^c, multiphoton ionization^c, neutralization reionization mass spectrometry^c, paper spray ionization^c, penning ionization^c, photoionization^c, plasma desorption ionization^c, proton transfer charge reduction^c, proton transfer reaction^c, pyrolysis mass spectrometry^c, resonance enhanced multiphoton ionization^c, secondary ionization^c, soft ionization^c, spark ionization^c, surface ionization^c, thermal ionization^c, vertical ionization^c

ionizing collision^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000426

This child of the former purgatory term ion reaction was made obsolete.

ions series considered^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001122

has super-classes: peptide sequence-level identification attribute^c

ions series considered in search^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001066

has super-classes: search input details^c
has sub-classes: param: a ion-H2O DEPRECATED^c, param: a ion-NH3 DEPRECATED^c, param: b ion-H2O DEPRECATED^c, param: b ion-H3PO4 DEPRECATED^c, param: b ion-NH3 DEPRECATED^c, param: y ion-H2O DEPRECATED^c, param: y ion-H3PO4 DEPRECATED^c, param: y ion-NH3 DEPRECATED^c

IonSpec instrument model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000123

has super-classes: Varian instrument model^c
has sub-classes: HiRes ESI^c, HiRes MALDI^c, OMEGA^c, OMEGA-2001^c, explorer^c, ultima^c

iProphet^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002288

has super-classes: Trans-Proteomic Pipeline software^c

iProX dataset identifier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002836

has super-classes: external reference identifier^c; has value type^op some xsd string^c

iProX dataset URI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002837

has super-classes: external reference identifier^c; has value type^op some xsd any u r i^c

IPTL quantitation analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002212

has super-classes: isobaric label quantitation analysis^c

iRT retention time normalization standard^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002005

has super-classes: retention time normalization standard^c

ISB mzXML format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000566

has super-classes: mass spectrometer file format^c

isobaric label quantitation analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002009

has super-classes: quantitation analysis summary^c
has sub-classes: DiART quantitation analysis^c, DiLeu quantitation analysis^c, IPTL quantitation analysis^c, TMT quantitation analysis^c, aminoxyTMT quantitation analysis^c, glyco-TMT quantitation analysis^c, hydrazideTMT quantitation analysis^c, iTRAQ quantitation analysis^c, iTRAQH quantitation analysis^c, iodoTMT quantitation analysis^c

IsobariQ^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002210

has super-classes: quantitation software name^c; analysis software^c

isoelectric point^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000862

has super-classes: molecular entity property^c; has value type^op some xsd float^c
has sub-classes: predicted isoelectric point^c

isoform-level identification attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003131

has super-classes: single identification result attribute^c
has sub-classes: isoform-level identification statistic^c

isoform-level identification statistic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003132

has super-classes: isoform-level identification attribute^c
has sub-classes: isoform-level Q-value^c

isoform-level Q-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003133

has super-classes: isoform-level identification statistic^c; has_domain^op some value between 0 and 1 inclusive^c; has value type^op some xsd double^c
has sub-classes: ProSight:isoform Q-value^c

isolation width^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000023

This former purgatory term was made obsolete.

has super-classes: has_units^op some m/z^c; has value type^op some xsd float^c

isolation window attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000792

has super-classes: object attribute^c; part_of^op some scan^c
has sub-classes: isolation window full range^c, isolation window lower limit^c, isolation window lower offset^c, isolation window target m/z^c, isolation window upper limit^c, isolation window upper offset^c

isolation window full range^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003159

has super-classes: isolation window attribute^c

isolation window lower limit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000794

This term was obsoleted in favour of using a target, lower, upper offset scheme. See terms 1000827-1000829.

has super-classes: isolation window attribute^c; has_units^op some m/z^c; has value type^op some xsd float^c

isolation window lower offset^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000828

has super-classes: isolation window attribute^c; has_units^op some m/z^c; has value type^op some xsd float^c

isolation window target m/z^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000827

has super-classes: isolation window attribute^c; has_units^op some m/z^c; has value type^op some xsd float^c

isolation window upper limit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000793

This term was obsoleted in favour of using a target, lower, upper offset scheme. See terms 1000827-1000829.

has super-classes: isolation window attribute^c; has_units^op some m/z^c; has value type^op some xsd float^c

isolation window upper offset^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000829

has super-classes: isolation window attribute^c; has_units^op some m/z^c; has value type^op some xsd float^c

isomer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002959

has super-classes: molecule^c; has value type^op some xsd string^c
has sub-classes: isotopologue^c, isotopomer^c

IsoPrime^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000164

has super-classes: Waters instrument model^c

IsoProbe^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000165

has super-classes: Waters instrument model^c

IsoProbe T^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000166

has super-classes: Waters instrument model^c

isotope dilution mass spectrometry^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000220

This child of the former purgatory term mass spectrometry was made obsolete.

isotope ratio mass spectrometry^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000263

This child of the former purgatory term mass spectrometry was made obsolete.

isotopic fit score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002891

has super-classes: small molecule confidence measure^c; has value type^op some xsd float^c

isotopic ion MS peak^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002956

has super-classes: peak^c; has value type^op some xsd string^c
has sub-classes: isotopologue MS peak^c, isotopomer MS peak^c

isotopic pattern area^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001846

has super-classes: quantification datatype^c; has value type^op some xsd double^c

isotopologue^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002961

has super-classes: isomer^c; has value type^op some xsd string^c

Isotopologue ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000366

This child of the former purgatory term ion chemical type was made obsolete.

isotopologue MS peak^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002958

has super-classes: isotopic ion MS peak^c; has value type^op some xsd string^c

isotopomer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002960

has super-classes: isomer^c; has value type^op some xsd string^c

isotopomer MS peak^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002957

has super-classes: isotopic ion MS peak^c; has value type^op some xsd string^c

isotopomer peak^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002897

This term was obsoleted because it was replaced by the more exact terms MS:1002956 'isotopic ion MS peak', MS:1002957 'isotopomer MS peak' and MS:1002958 'isotopologue MS peak' instead.

has super-classes: peak^c; has value type^op some xsd string^c

Isotopomeric ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000367

This child of the former purgatory term ion chemical type was made obsolete.

ISQ^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001908

has super-classes: Thermo Scientific instrument model^c

ITQ 1100^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000637

has super-classes: Thermo Scientific instrument model^c

ITQ 700^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000635

has super-classes: Thermo Scientific instrument model^c

ITQ 900^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000636

has super-classes: Thermo Scientific instrument model^c

iTRAQ quantitation analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001837

has super-classes: isobaric label quantitation analysis^c

iTRAQ reagent^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002622

has super-classes: sample label^c
has sub-classes: iTRAQ reagent 113^c, iTRAQ reagent 114^c, iTRAQ reagent 115^c, iTRAQ reagent 116^c, iTRAQ reagent 117^c, iTRAQ reagent 118^c, iTRAQ reagent 119^c, iTRAQ reagent 121^c

iTRAQ reagent 113^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002623

has super-classes: iTRAQ reagent^c

iTRAQ reagent 114^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002624

has super-classes: iTRAQ reagent^c

iTRAQ reagent 115^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002625

has super-classes: iTRAQ reagent^c

iTRAQ reagent 116^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002626

has super-classes: iTRAQ reagent^c

iTRAQ reagent 117^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002627

has super-classes: iTRAQ reagent^c

iTRAQ reagent 118^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002628

has super-classes: iTRAQ reagent^c

iTRAQ reagent 119^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002629

has super-classes: iTRAQ reagent^c

iTRAQ reagent 121^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002630

has super-classes: iTRAQ reagent^c

ITRAQAnalyzer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002129

has super-classes: TOPP software^c; quantitation software name^c

iTRAQH quantitation analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002760

has super-classes: isobaric label quantitation analysis^c

jet separator^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000061

has super-classes: inlet type^c

journal article keyword^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001924

has super-classes: external reference keyword^c; has value type^op some xsd string^c

jPOST dataset identifier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002632

has super-classes: external reference identifier^c; has value type^op some xsd string^c

jPOST dataset URI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002633

has super-classes: external reference identifier^c; has value type^op some xsd any u r i^c

kinetic energy analyzer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000311

has super-classes: ion optics type^c

kinetic energy release distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000265

This child of the former purgatory term ion reaction was made obsolete.

kinetic method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000431

This child of the former purgatory term ion reaction was made obsolete.

KSDP score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003012

has super-classes: PSM-level search engine specific statistic^c; has_order^op some higher score better^c

KW^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001017

has super-classes: PEFF file sequence entry term^c; has value type^op some xsd string^c

lab head^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002332

has super-classes: contact role^c

lab personnel^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001270

has super-classes: role type^c; has value type^op some xsd string^c

label free sample^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002038

has super-classes: sample attribute^c

label-free peptide level quantitation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002020

has super-classes: LC-MS label-free quantitation analysis^c; has value type^op some xsd boolean^c

label-free protein level quantitation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002021

has super-classes: LC-MS label-free quantitation analysis^c; has value type^op some xsd boolean^c

label-free proteingroup level quantitation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002022

has super-classes: LC-MS label-free quantitation analysis^c; has value type^op some xsd boolean^c

label-free raw feature quantitation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002019

has super-classes: LC-MS label-free quantitation analysis^c; has value type^op some xsd boolean^c

laser^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000840

has super-classes: part_of^op some source attribute^c

laser attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000841

has super-classes: part_of^op some laser^c
has sub-classes: attenuation^c, focus diameter x^c, focus diameter y^c, impact angle^c, pulse duration^c, pulse energy^c, wavelength^c

Laser Desorption^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000266

This term was made obsolete because it was replaced by laser desorption ionization (MS:1000393).

laser desorption ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000393

has super-classes: desorption ionization^c

laser type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000842

has super-classes: part_of^op some laser^c
has sub-classes: dye-laser^c, free electron laser^c, gas laser^c, solid-state laser^c

LC-MS feature intensity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001840

has super-classes: feature-level quantification datatype^c; has value type^op some xsd double^c

LC-MS feature volume^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001841

has super-classes: feature-level quantification datatype^c; has value type^op some xsd double^c

LC-MS label-free quantitation analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001834

has super-classes: quantitation analysis summary^c
has sub-classes: label-free peptide level quantitation^c, label-free protein level quantitation^c, label-free proteingroup level quantitation^c, label-free raw feature quantitation^c

LCMS-2010A^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000606

has super-classes: Shimadzu Scientific Instruments instrument model^c

LCMS-2010EV^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000605

has super-classes: Shimadzu Scientific Instruments instrument model^c

LCMS-2020^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003003

has super-classes: Shimadzu Scientific Instruments instrument model^c

LCMS-8040^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003002

has super-classes: Shimadzu Scientific Instruments instrument model^c

LCMS-8045^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003001

has super-classes: Shimadzu Scientific Instruments instrument model^c

LCMS-8050^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003000

has super-classes: Shimadzu Scientific Instruments instrument model^c

LCMS-8060^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002999

has super-classes: Shimadzu Scientific Instruments instrument model^c

LCMS-9030^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002998

has super-classes: Shimadzu Scientific Instruments instrument model^c

LCMS-IT-TOF^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000604

has super-classes: Shimadzu Scientific Instruments instrument model^c

LCQ Advantage^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000167

has super-classes: Thermo Finnigan instrument model^c

LCQ Classic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000168

has super-classes: Thermo Finnigan instrument model^c

LCQ Deca^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000554

has super-classes: Thermo Finnigan instrument model^c

LCQ Deca XP Plus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000169

has super-classes: Thermo Finnigan instrument model^c

LCQ Fleet^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000578

has super-classes: Thermo Finnigan instrument model^c

leading protein^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002401

has super-classes: protein group or subset relationship^c

LECO instrument model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001800

has super-classes: instrument model^c
has sub-classes: Citius HRT^c, Pegasus^c, Pegasus 4D^c, Pegasus BT^c, Pegasus HRT^c, Pegasus III^c, TruTOF^c

LECO software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001798

has super-classes: software^c
has sub-classes: ChromaTOF HRT software^c, ChromaTOF software^c

Length^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001006

has super-classes: PEFF file sequence entry term^c; has value type^op some xsd int^c

leukocyte elastase^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001915

has super-classes: cleavage agent name^c; has regexp^op some (?<=[ALIV])(?^c

Libra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002291

has super-classes: Trans-Proteomic Pipeline software^c

library analyte attribute set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003238

has super-classes: spectral library attribute^c

library attribute set name^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003212

has super-classes: has value type^op some xsd string^c; part_of^op some library spectrum attribute set^c; part_of^op some library analyte attribute set^c; part_of^op some library interpretation attribute set^c

library creation log^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003206

has super-classes: library provenance attribute^c; has value type^op some xsd string^c

library creation software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003207

has super-classes: software^c; spectral library attribute^c
has sub-classes: PeakForest^c

library description^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003189

has super-classes: spectral library attribute^c; has value type^op some xsd string^c

library entry^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003172

has super-classes: part_of^op some spectral library^c

library entry attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003234

has super-classes: part_of^op some library entry^c
has sub-classes: library entry comment^c, library entry index^c, library entry key^c, library spectrum cross reference^c

library entry comment^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003168

has super-classes: library entry attribute^c; has value type^op some xsd string^c

library entry index^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003062

has super-classes: library entry attribute^c

library entry key^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003237

has super-classes: library entry attribute^c

library format version^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003186

has super-classes: spectral library attribute^c; has value type^op some xsd string^c

library identifier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003187

has super-classes: spectral library attribute^c; has value type^op some xsd string^c

library interpretation attribute set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003239

has super-classes: spectral library attribute^c

library name^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003188

has super-classes: spectral library attribute^c; has value type^op some xsd string^c

library provenance attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003201

has super-classes: spectral library attribute^c
has sub-classes: command-line parameters^c, constituent identification file^c, constituent library file^c, constituent spectrum file^c, library creation log^c

library spectrum attribute set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003211

has super-classes: spectral library attribute^c

library spectrum cross reference^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003257

has super-classes: library entry attribute^c
has sub-classes: related spectrum^c, similar spectrum^c

library URI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003191

has super-classes: spectral library attribute^c; has value type^op some xsd string^c

library version^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003190

has super-classes: spectral library attribute^c; has value type^op some xsd string^c

license URI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003197

has super-classes: spectral library attribute^c; has value type^op some xsd string^c

LIFT^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002000

has super-classes: dissociation method^c

LightSight Software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000662

has super-classes: SCIEX software^c; analysis software^c; data processing software^c

LIMSA^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002978

has super-classes: data processing software^c; lipidomics analysis software^c

linear^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000095

This term was made obsolete because it was redundant with the Pato Ontology term linear (UO:0001199).

has super-classes: scan law^c

linear ion trap^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000291

has super-classes: ion trap^c
has sub-classes: axial ejection linear ion trap^c, radial ejection linear ion trap^c

linked scan^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000329

This former purgatory term was made obsolete.

linked scan at constant b/e^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000330

This child of the former purgatory term linked scan was made obsolete.

Linked Scan at Constant B2/E^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000332

This child of the former purgatory term linked scan was made obsolete.

Linked Scan at Constant B[1-(E/E0)]^1/2 / E^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000333

This child of the former purgatory term linked scan was made obsolete.

Linked Scan at Constant E2/V^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000331

This child of the former purgatory term linked scan was made obsolete.

Lipid Data Analyzer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002965

has super-classes: data processing software^c; lipidomics analysis software^c

lipid ion interpretation format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003107

has super-classes: ion interpretation format^c

Lipid-Pro^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002972

has super-classes: data processing software^c; lipidomics analysis software^c

LipidBlast^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002971

has super-classes: data processing software^c; lipidomics analysis software^c

LipiDex^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002974

has super-classes: data processing software^c; lipidomics analysis software^c

LipidFinder^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002973

has super-classes: data processing software^c; lipidomics analysis software^c

LipidHunter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002967

has super-classes: data processing software^c; lipidomics analysis software^c

LipidMatch^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002969

has super-classes: data processing software^c; lipidomics analysis software^c

lipidomics analysis software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002964

has super-classes: small molecule analysis software^c
has sub-classes: ALEX^c, ALEX123^c, Greazy^c, LIMSA^c, LIQUID^c, LOBSTAHS^c, LPPtiger^c, LipiDex^c, Lipid Data Analyzer^c, Lipid-Pro^c, LipidBlast^c, LipidFinder^c, LipidHunter^c, LipidMatch^c, LipidQA^c, LipidXplorer^c

LipidQA^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002980

has super-classes: data processing software^c; lipidomics analysis software^c

LipidXplorer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002968

has super-classes: data processing software^c; lipidomics analysis software^c

LIQUID^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002975

has super-classes: data processing software^c; lipidomics analysis software^c

liquid chromatography separation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002271

has super-classes: chromatography separation^c

liquid sample state^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000049

has super-classes: sample state^c

liquid secondary ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000395

has super-classes: ionization type^c

list of floats^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002713

has super-classes: list of type^c; has value type^op some xsd float^c

list of integers^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002712

has super-classes: list of type^c; has value type^op some xsd integer^c

list of strings^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002711

has super-classes: list of type^c; has value type^op some xsd string^c

list of type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002710

has super-classes: compound data type^c
has sub-classes: list of floats^c, list of integers^c, list of strings^c

LOBSTAHS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002979

has super-classes: data processing software^c; lipidomics analysis software^c

local FDR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001250

has super-classes: peptide sequence-level identification statistic^c; single protein identification statistic^c; has value type^op some xsd double^c

local FLR at threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002692

has super-classes: PTM localization result list statistic^c

local retention time^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000895

has super-classes: retention time^c; has_units^op some u o 0000010^c; has_units^op some u o 0000031^c; has value type^op some xsd float^c

low complexity QC sample metric^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000075

has super-classes: QC sample metric^c
has sub-classes: QC1 sample metric^c

low energy collisions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000432

This child of the former purgatory term ion reaction was made obsolete.

low intensity data point removal^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000594

has super-classes: data filtering^c

low intensity threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000629

has super-classes: data processing parameter^c; has_units^op some number of detector counts^c; has_units^op some percent of base peak^c; has_units^op some counts per second^c; has_units^op some percent of base peak times 100^c; has_units^op some u o 0000269^c; has value type^op some xsd float^c

low-energy collision-induced dissociation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000433

has super-classes: dissociation method^c

lower score better^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002109

has super-classes: part_of^op some search engine specific score^c

LOWESS smoothing^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000783

has super-classes: smoothing^c

lowest observed m/z^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000528

has super-classes: chromatogram attribute^c; spectrum property^c; has_units^op some m/z^c; has value type^op some xsd float^c

lowest observed wavelength^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000619

has super-classes: chromatogram attribute^c; spectrum property^c; has_units^op some u o 0000018^c; has value type^op some xsd float^c

LPPtiger^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003010

has super-classes: data processing software^c; lipidomics analysis software^c

LTQ^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000447

has super-classes: Thermo Scientific instrument model^c

LTQ FT^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000448

has super-classes: Thermo Scientific instrument model^c

LTQ FT Ultra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000557

has super-classes: Thermo Scientific instrument model^c

LTQ Orbitrap^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000449

has super-classes: Thermo Scientific instrument model^c

LTQ Orbitrap Classic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002835

has super-classes: Thermo Scientific instrument model^c

LTQ Orbitrap Discovery^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000555

has super-classes: Thermo Scientific instrument model^c

LTQ Orbitrap Elite^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001910

has super-classes: Thermo Scientific instrument model^c

LTQ Orbitrap Velos^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001742

has super-classes: Thermo Scientific instrument model^c

LTQ Orbitrap Velos Pro^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003096

has super-classes: Thermo Scientific instrument model^c

LTQ Orbitrap XL^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000556

has super-classes: Thermo Scientific instrument model^c

LTQ Orbitrap XL ETD^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000639

has super-classes: Thermo Scientific instrument model^c

LTQ Velos^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000855

has super-classes: Thermo Scientific instrument model^c

LTQ Velos ETD^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000856

has super-classes: Thermo Scientific instrument model^c

LTQ XL^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000854

has super-classes: Thermo Scientific instrument model^c

LTQ XL ETD^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000638

has super-classes: Thermo Scientific instrument model^c

LXQ^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000450

has super-classes: Thermo Scientific instrument model^c

Lys-C^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001309

has super-classes: cleavage agent name^c; has regexp^op some (?<=K)(?!P)^c

Lys-C/P^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001310

has super-classes: cleavage agent name^c; has regexp^op some (?<=K)^c

Lys-N^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003093

has super-classes: cleavage agent name^c; has regexp^op some (?<=K)(?!P)^c

LysargiNase^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002708

has super-classes: cleavage agent name^c; has regexp^op some (?=[KR])^c

M+H ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002820

has super-classes: positive mode adduct ion^c

M-H ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002821

has super-classes: negative mode adduct ion^c

m/z^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000040

has super-classes: u o 0000000

m/z acquisition range^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000069

has super-classes: n-tuple^c; has_metric_category^op some ID free metric^c; has_metric_category^op some single run based metric^c; has_metric_category^op some MS metric^c; has_units^op some m/z^c; has_value_concept^op some s t a t o 0000035^c

m/z array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000514

has super-classes: binary data array^c; has_units^op some m/z^c

m/z calibration^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001485

has super-classes: data processing action^c

m/z Separation Method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000444

This former purgatory term was made obsolete.

M@LDI L^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000170

has super-classes: Waters instrument model^c

M@LDI LR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000171

has super-classes: Waters instrument model^c

magnetic deflection^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000221

has super-classes: ion optics type^c

magnetic field strength^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000025

has super-classes: mass analyzer attribute^c; has_units^op some u o 0000228^c; has value type^op some xsd float^c

magnetic sector^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000080

has super-classes: mass analyzer type^c

MALDI LTQ Orbitrap^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000643

has super-classes: Thermo Scientific instrument model^c

MALDI LTQ XL^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000642

has super-classes: Thermo Scientific instrument model^c

MALDI matrix application^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000832

has super-classes: part_of^op some sample preparation^c
has sub-classes: matrix solution^c, matrix solution concentration^c

MALDI Solutions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001558

has super-classes: acquisition software^c; analysis software^c; data processing software^c; Shimadzu Corporation software^c
has sub-classes: MALDI Solutions Microbial Identification^c

MALDI Solutions LC-MALDI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002381

has super-classes: acquisition software^c; analysis software^c; data processing software^c; Shimadzu Corporation software^c

MALDI Solutions Microbial Identification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001878

has super-classes: MALDI Solutions^c

maldi spot identifier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000552

This former purgatory term was made obsolete.

MALDI Synapt G2 HDMS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001771

has super-classes: Waters instrument model^c

MALDI Synapt G2 MS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001772

has super-classes: Waters instrument model^c

MALDI Synapt G2-S HDMS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001773

has super-classes: Waters instrument model^c

MALDI Synapt G2-S MS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001774

has super-classes: Waters instrument model^c

MALDI SYNAPT G2-Si^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002727

has super-classes: Waters instrument model^c

MALDI Synapt HDMS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001775

has super-classes: Waters instrument model^c

MALDI Synapt MS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001776

has super-classes: Waters instrument model^c

Maltcms^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002344

has super-classes: analysis software^c; data processing software^c

manual validation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001125

has super-classes: peptide sequence-level identification statistic^c; single protein identification statistic^c; has value type^op some xsd string^c

MapAligner^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000760

This term was made obsolete, because it is replaced by the terms under the 'TOPP map aligner' (MS:1002147) branch.

has super-classes: TOPP software^c

MapNormalizer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000761

has super-classes: TOPP software^c

marginally distinguished protein^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002409

has super-classes: protein group or subset relationship^c

MaRiMba^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000872

has super-classes: SRM software^c

MaRiMba^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000924

This term was made obsolete because it was redundant with an existing term (MS:1000872).

MarkerView Software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000665

has super-classes: SCIEX software^c; analysis software^c; data processing software^c

Mascot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001207

has super-classes: analysis software^c

Mascot DAT format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001199

has super-classes: intermediate analysis format^c

Mascot Distiller^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001488

has super-classes: quantitation software name^c; analysis software^c

Mascot input parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002095

has super-classes: search engine specific input parameter^c
has sub-classes: Mascot:C13 counts^c, Mascot:IncludeErrorTolerantMatches^c, Mascot:Instrument^c, Mascot:IntegratedSpectralLibrarySearch^c, Mascot:MaxProteinHits^c, Mascot:MinMSMSThreshold^c, Mascot:MinNumSigUniqueSeqs^c, Mascot:PreferredTaxonomy^c, Mascot:ProteinGrouping^c, Mascot:ProteinScoringMethod^c, Mascot:RequireBoldRed^c, Mascot:ShowDecoyMatches^c, Mascot:ShowHomologousProteinsWithSamePeptides^c, Mascot:ShowHomologousProteinsWithSubsetOfPeptides^c, Mascot:SigThreshold^c, Mascot:SigThresholdType^c, Mascot:UseUnigeneClustering^c, Mascot:use MudPIT scoring^c

Mascot Integra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001489

has super-classes: analysis software^c

Mascot MGF format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001062

has super-classes: mass spectrometer file format^c

Mascot Parser^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001478

has super-classes: analysis software^c

Mascot query number^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001528

The spectrum (query) number in a Mascot results file, starting from 1.

has super-classes: native spectrum identifier format^c; spectrum identification result details^c

Mascot:C13 counts^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001962

has super-classes: Mascot input parameter^c; has value type^op some xsd non negative integer^c

Mascot:expectation value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001172

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

Mascot:homology threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001370

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

Mascot:identity threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001371

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

Mascot:IncludeErrorTolerantMatches^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001324

has super-classes: Mascot input parameter^c; has value type^op some xsd boolean^c

Mascot:Instrument^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001656

has super-classes: Mascot input parameter^c; has value type^op some xsd string^c

Mascot:IntegratedSpectralLibrarySearch^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002749

has super-classes: Mascot input parameter^c; has value type^op some xsd boolean^c

Mascot:matched ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001173

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd non negative integer^c

Mascot:MaxProteinHits^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001317

has super-classes: Mascot input parameter^c; has value type^op some xsd string^c

Mascot:MinMSMSThreshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001319

has super-classes: Mascot input parameter^c; has value type^op some xsd double^c

Mascot:MinNumSigUniqueSeqs^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003030

has super-classes: Mascot input parameter^c; has value type^op some xsd non negative integer^c

Mascot:PreferredTaxonomy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001793

has super-classes: Mascot input parameter^c; has value type^op some xsd string^c

Mascot:ProteinGrouping^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001759

has super-classes: Mascot input parameter^c; has value type^op some xsd string^c

Mascot:ProteinScoringMethod^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001318

has super-classes: Mascot input parameter^c; has value type^op some xsd string^c

Mascot:PTM site assignment confidence^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002012

has super-classes: PTM localization PSM-level statistic^c; has_units^op some u o 0000187^c; has value type^op some xsd string^c

Mascot:PTM site assignment confidence threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002561

has super-classes: PTM localization score threshold^c; has value type^op some xsd double^c

Mascot:RequireBoldRed^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001322

has super-classes: Mascot input parameter^c; has value type^op some xsd boolean^c

Mascot:score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001171

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

Mascot:ShowDecoyMatches^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001325

has super-classes: Mascot input parameter^c; has value type^op some xsd boolean^c

Mascot:ShowHomologousProteinsWithSamePeptides^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001320

has super-classes: Mascot input parameter^c; has value type^op some xsd boolean^c

Mascot:ShowHomologousProteinsWithSubsetOfPeptides^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001321

has super-classes: Mascot input parameter^c; has value type^op some xsd boolean^c

Mascot:SigThreshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001316

has super-classes: Mascot input parameter^c; has value type^op some xsd double^c

Mascot:SigThresholdType^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001758

has super-classes: Mascot input parameter^c; has value type^op some xsd string^c

Mascot:total ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001174

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd non negative integer^c

Mascot:use MudPIT scoring^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001667

This term was made obsolete because it's recommended to use Mascot:ProteinScoringMethod (MS:1001318) instead.

has super-classes: Mascot input parameter^c; has value type^op some xsd boolean^c

Mascot:UseUnigeneClustering^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001323

has super-classes: Mascot input parameter^c; has value type^op some xsd boolean^c

mass analyzed ion kinetic energy spectrometry^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000267

This child of the former purgatory term mass spectrometer was made obsolete.

mass analyzer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000451

has super-classes: part_of^op some instrument^c

mass analyzer attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000480

has super-classes: part_of^op some mass analyzer^c
has sub-classes: TOF Total Path Length^c, accuracy^c, final MS exponent^c, magnetic field strength^c, reflectron state^c

mass analyzer type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000443

has super-classes: part_of^op some mass analyzer^c
has sub-classes: cyclotron^c, electrostatic energy analyzer^c, fourier transform ion cyclotron resonance mass spectrometer^c, ion trap^c, magnetic sector^c, orbitrap^c, quadrupole^c, stored waveform inverse fourier transform^c, time-of-flight^c

mass array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003143

has super-classes: binary data array^c; has_units^op some u o 0000221^c

mass defect^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000222

This child of the former purgatory term ion attribute was made obsolete.

has super-classes: has_units^op some u o 0000002^c; has value type^op some xsd float^c

mass limit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000312

This former purgatory term was made obsolete.

mass number^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000223

This child of the former purgatory term ion attribute was made obsolete.

has super-classes: has value type^op some xsd int^c

mass resolution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000011

has super-classes: scan attribute^c; has value type^op some xsd string^c

mass resolving power^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000234

This term was made obsolete because it was replaced by mass resolving power (MS:1000800).

has super-classes: has value type^op some xsd float^c

mass resolving power^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000800

has super-classes: scan attribute^c; has value type^op some xsd string^c

mass scan^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000090

This child of the former purgatory term Scan Function was made obsolete.

mass selective axial ejection^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000314

This child of the former purgatory term m/z Separation Method was made obsolete.

mass selective instability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000315

This child of the former purgatory term m/z Separation Method was made obsolete.

mass spectrograph obsolete^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000292

This former purgatory term was made obsolete.

mass spectrometer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000293

This former purgatory term was made obsolete.

mass spectrometer file format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000560

has super-classes: file format^c
has sub-classes: ABI WIFF format^c, Agilent MassHunter format^c, Andi-MS format^c, Andromeda:apl file format^c, Bioworks SRF format^c, Bruker BAF format^c, Bruker Container format^c, Bruker FID format^c, Bruker TDF format^c, Bruker U2 format^c, Bruker XML format^c, Bruker/Agilent YEP format^c, DTA format^c, ISB mzXML format^c, MS1 format^c, MS2 format^c, Mascot MGF format^c, Micromass PKL format^c, PSI mzData format^c, PerSeptive PKS format^c, Phenyx XML format^c, ProteinLynx Global Server mass spectrum XML format^c, Proteinscape spectra^c, SCIEX API III format^c, SCIEX TOF/TOF T2D format^c, SCIEX TOF/TOF database^c, SCiLS Lab format^c, Shimadzu Biotech LCD format^c, Shimadzu Biotech database entity^c, Thermo RAW format^c, UIMF format^c, Waters raw format^c, chrom format^c, feature format^c, msalign format^c, mz5 format^c, mzML format^c, mzMLb format^c, parameter file^c, text format^c

mass spectrometry^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000268

This former purgatory term was made obsolete.

mass spectrometry acquisition method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003213

has super-classes: data file content^c; acquisition parameter^c
has sub-classes: data independent acquisition from dissociation of full mass range^c, data independent acquisition from dissociation of full mass range after ion mobility separation^c, data independent acquisition from dissociation of scanning quadrupole across mass range^c, data independent acquisition from dissociation of sequential mass ranges^c, data independent acquisition from dissociation of sequential mass ranges after ion mobility separation^c, selected ion monitoring^c, selected reaction monitoring^c

mass spectrometry acquisition method aspect^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003214

has super-classes: spectrum generation information^c
has sub-classes: data-dependent acquisition^c, data-independent acquisition^c, dissociation of full mass range^c, dissociation of scanning quadrupole across a specified mass range^c, dissociation of sequential mass ranges^c, ion mobility separation^c

mass spectrometry imaging^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002521

has super-classes: run attribute^c

mass spectrometry/mass spectrometry^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000269

This child of the former purgatory term mass spectrometer was made obsolete.

mass spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000294

has super-classes: data file content^c; spectrum type^c
has sub-classes: CRM spectrum^c, MS1 spectrum^c, MSn spectrum^c, SIM spectrum^c, SRM spectrum^c, charge inversion mass spectrum^c, constant neutral gain spectrum^c, constant neutral loss spectrum^c, e/2 mass spectrum^c, precursor ion spectrum^c, product ion spectrum^c

mass table options^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001354

has super-classes: part_of^op some spectrum interpretation^c
has sub-classes: mass table source^c

mass table source^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001345

has super-classes: mass table options^c
has sub-classes: AAIndex mass table^c

mass trace reporting: polygons^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001827

has super-classes: feature list attribute^c

mass trace reporting: rectangles^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001826

has super-classes: feature list attribute^c

mass type settings^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001210

has super-classes: search input details^c
has sub-classes: fragment mass type average^c, fragment mass type mono^c, parent mass type average^c, parent mass type mono^c

mass unit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000464

This term was made obsolete because it was redundant with Unit Ontology mass unit (UO:0000002).

MassHunter BioConfirm^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000683

has super-classes: Agilent software^c; analysis software^c; data processing software^c

MassHunter Data Acquisition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000678

has super-classes: Agilent software^c; acquisition software^c

MassHunter Easy Access^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000679

has super-classes: Agilent software^c; acquisition software^c

MassHunter Mass Profiler^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000685

has super-classes: Agilent software^c; analysis software^c; data processing software^c

MassHunter Metabolite ID^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000682

has super-classes: Agilent software^c; analysis software^c; data processing software^c

MassHunter Qualitative Analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000680

has super-classes: Agilent software^c; analysis software^c; data processing software^c

MassHunter Quantitative Analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000681

has super-classes: Agilent software^c; analysis software^c; data processing software^c

MassIVE dataset identifier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002487

has super-classes: external reference identifier^c; has value type^op some xsd string^c

MassIVE dataset URI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002488

has super-classes: external reference identifier^c; has value type^op some xsd any u r i^c

MassLynx^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000534

has super-classes: Waters software^c; acquisition software^c; analysis software^c; data processing software^c

massWolf^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000538

has super-classes: data processing software^c

MAT253^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000172

has super-classes: Finnigan MAT instrument model^c

MAT900XP^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000173

has super-classes: Finnigan MAT instrument model^c

MAT900XP Trap^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000174

has super-classes: Finnigan MAT instrument model^c

MAT95XP^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000175

has super-classes: Finnigan MAT instrument model^c

MAT95XP Trap^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000176

has super-classes: Finnigan MAT instrument model^c

mathieu stability diagram^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000316

This child of the former purgatory term m/z Separation Method was made obsolete.

matrix^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000006

The actual structure of the matrix is defined in the mzQC specification document.

has super-classes: QC metric value type^c

matrix application type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000833

has super-classes: part_of^op some MALDI matrix application^c
has sub-classes: crushed crystal MALDI sample preparation^c, dried droplet MALDI matrix preparation^c, fast evaporation MALDI sample preparation^c, overlayer MALDI sample preparation^c, precoated MALDI sample plate^c, printed MALDI matrix preparation^c, quick and dirty MALDI sample preparation^c, sandwich MALDI sample preparation^c, spin coating MALDI sample preparation^c, sprayed MALDI matrix preparation^c, vacuum drying MALDI sample preparation^c

matrix solution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000834

has super-classes: MALDI matrix application^c; has value type^op some xsd string^c

matrix solution concentration^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000835

has super-classes: MALDI matrix application^c; has_units^op some u o 0000175^c; has value type^op some xsd float^c

matrix-assisted laser desorption ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000075

has super-classes: desorption ionization^c

mattauch-herzog geometry^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000295

This former purgatory term was made obsolete.

mature protein^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001020

has super-classes: PEFF molecule processing keyword^c; has regexp^op some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment^c; has value type^op some xsd string^c

Maui^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002452

has super-classes: analysis software^c; data processing software^c

max fold change^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001853

has super-classes: quantification datatype^c; has value type^op some xsd double^c

maXis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001541

has super-classes: Bruker Daltonics maXis series^c

maXis 4G^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002279

has super-classes: Bruker Daltonics maXis series^c

maXis II^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003004

has super-classes: Bruker Daltonics maXis series^c

MaxQuant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001583

has super-classes: quantitation software name^c; analysis software^c

MaxQuant protein group-level score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003097

has super-classes: search engine specific score for protein groups^c; has value type^op some xsd double^c

MaxQuant-DIA PEP^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003101

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

MaxQuant-DIA peptide PEP^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003099

has super-classes: search engine specific peptide sequence-level identification statistic^c; has value type^op some xsd double^c

MaxQuant-DIA score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003100

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

MaxQuant:feature intensity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001903

has super-classes: feature-level quantification datatype^c; has value type^op some xsd double^c

MaxQuant:LFQ intensity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001902

has super-classes: quantification datatype^c; has value type^op some xsd double^c

MaxQuant:MS/MS count^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001904

has super-classes: quantification datatype^c; has value type^op some xsd int^c

MaxQuant:P-site localization probability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001982

has super-classes: PTM localization PSM-level statistic^c; has regexp^op some regular expression for modification localization scoring^c; has value type^op some xsd string^c

MaxQuant:P-site localization probability threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002564

has super-classes: PTM localization score threshold^c; has value type^op some xsd double^c

MaxQuant:PEP^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001901

has super-classes: quantification datatype^c; has value type^op some xsd double^c

MaxQuant:peptide counts (all)^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001898

has super-classes: peptide-level quantification datatype^c; has value type^op some xsd int^c

MaxQuant:peptide counts (razor+unique)^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001899

has super-classes: peptide-level quantification datatype^c; has value type^op some xsd int^c

MaxQuant:peptide counts (unique)^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001897

has super-classes: peptide-level quantification datatype^c; has value type^op some xsd int^c

MaxQuant:Phospho (STY) Probabilities^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001980

has super-classes: PTM localization PSM-level statistic^c; has regexp^op some regular expression for modification localization scoring^c; has value type^op some xsd string^c

MaxQuant:Phospho (STY) Probabilities threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002566

has super-classes: PTM localization score threshold^c; has value type^op some xsd double^c

MaxQuant:Phospho (STY) Score Diffs^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001981

has super-classes: PTM localization PSM-level statistic^c; has value type^op some xsd string^c

MaxQuant:PTM Delta Score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001983

has super-classes: PTM localization PSM-level statistic^c; has regexp^op some regular expression for modification localization scoring^c; has value type^op some xsd string^c

MaxQuant:PTM Delta Score threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002565

has super-classes: PTM localization score threshold^c; has value type^op some xsd double^c

MaxQuant:PTM Score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001979

has super-classes: PTM localization PSM-level statistic^c; has regexp^op some regular expression for modification localization scoring^c; has value type^op some xsd string^c

MaxQuant:PTM Score threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002563

has super-classes: PTM localization score threshold^c; has value type^op some xsd double^c

MaxQuant:sequence length^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001900

has super-classes: peptide-level quantification datatype^c; has value type^op some xsd int^c

McLafferty Rearrangement^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000434

This child of the former purgatory term ion reaction was made obsolete.

MD-Score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002537

has super-classes: PTM localization PSM-level statistic^c; has regexp^op some regular expression for modification localization scoring^c; has value type^op some xsd string^c

MD-Score threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002558

has super-classes: PTM localization score threshold^c; has value type^op some xsd double^c

MD5^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000568

has super-classes: data file checksum type^c; has value type^op some xsd string^c

mean^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002962

has super-classes: study variable average function^c

mean charge array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002478

has super-classes: binary data array^c

mean inverse reduced ion mobility array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003006

has super-classes: ion mobility array^c; has_units^op some volt-second per square centimeter^c; has value type^op some xsd float^c

mean ion mobility array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002816

has super-classes: ion mobility array^c; has_units^op some u o 0000010^c; has_units^op some u o 0000028^c; has value type^op some xsd float^c

mean ion mobility drift time array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002477

has super-classes: ion mobility array^c; has_units^op some u o 0000010^c; has_units^op some u o 0000028^c; has value type^op some xsd float^c

mean of spectra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000575

has super-classes: spectra combination^c

measurement method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000596

has super-classes: part_of^op some spectrum generation information^c
has sub-classes: resolution measurement method^c

median^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002883

has super-classes: study variable average function^c

median baseline reduction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001996

has super-classes: baseline reduction^c

median of spectra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000573

has super-classes: spectra combination^c

membrane inlet^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000396

has super-classes: inlet type^c

membrane separator^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000062

has super-classes: inlet type^c

merge of runs of 1D gel bands^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001824

has super-classes: raw files group attribute^c

metabolic labeling 14N / 15N quantitation analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001839

has super-classes: quantitation analysis summary^c

metabolic labelling purity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002069

has super-classes: modification parameters^c; has value type^op some xsd string^c

metabolic labelling: heavy N (mainly 15N)^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002068

has super-classes: modification parameters^c

metabolic labelling: natural N (mainly 14N)^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002062

has super-classes: modification parameters^c

metabolite^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003036

has super-classes: small molecule^c

MetaMorpheus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002826

has super-classes: analysis software^c

MetaMorpheus:protein score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002828

has super-classes: search engine specific score for protein groups^c; has_order^op some higher score better^c; has value type^op some xsd double^c

MetaMorpheus:score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002827

has super-classes: PSM-level search engine specific statistic^c; has_order^op some higher score better^c; has value type^op some xsd double^c

metastable ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000368

This child of the former purgatory term ion stability type was made obsolete.

method file format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002128

has super-classes: file format^c
has sub-classes: TraML format^c

METLIN^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000686

has super-classes: Agilent software^c; analysis software^c; data processing software^c

MGF raw scans^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001415

has super-classes: spectrum identification result details^c; has value type^op some xsd string^c

MGF scans^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001414

has super-classes: spectrum identification result details^c; has value type^op some xsd string^c

microchannel plate detector^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000114

has super-classes: array detector^c

microelectrospray^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000397

has super-classes: electrospray ionization^c

microflex^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000177

has super-classes: Bruker Daltonics flex series^c

microflex II^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001550

has super-classes: Bruker Daltonics flex series^c

microflex LRF^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001543

has super-classes: Bruker Daltonics flex series^c

microflex LT^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000701

has super-classes: Bruker Daltonics flex series^c

Micromass PKL format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000565

has super-classes: mass spectrometer file format^c

Microsoft Excel^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002059

has super-classes: quantitation software name^c

micrOTOF^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000702

has super-classes: Bruker Daltonics micrOTOF series^c

micrOTOF II^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001540

has super-classes: Bruker Daltonics micrOTOF series^c

microTOF LC^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000178

has super-classes: Bruker Daltonics micrOTOF series^c

micrOTOF-Q^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000703

has super-classes: Bruker Daltonics micrOTOF series^c

micrOTOF-Q II^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000704

has super-classes: Bruker Daltonics micrOTOF series^c

micrOTOF-Q III^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002299

has super-classes: Bruker Daltonics micrOTOF series^c

micrOTOFcontrol^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000726

has super-classes: Bruker software^c; acquisition software^c

MIDAS Workflow Designer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000673

has super-classes: SCIEX software^c

minimum information standard^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000900

has super-classes: standard^c

minimum number of enzymatic termini^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001578

has super-classes: common search engine input parameter^c; has value type^op some xsd non negative integer^c

minute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000038

This term was made obsolete because it was redundant with Unit Ontology minute (UO:0000031).

modification index^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002504

has super-classes: modification parameters^c; has value type^op some xsd int^c

modification localization scoring^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002491

has super-classes: special processing^c

modification motif^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001875

has super-classes: modification specificity rule^c; has value type^op some xsd string^c

modification parameters^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001055

has super-classes: part_of^op some spectrum interpretation^c
has sub-classes: Fixed modification^c, Variable modification^c, metabolic labelling purity^c, metabolic labelling: heavy N (mainly 15N)^c, metabolic labelling: natural N (mainly 14N)^c, modification index^c, modification position score^c, modification specificity rule^c, neutral loss^c, neutral loss^c, tolerance on types^c

modification position score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002506

has super-classes: modification parameters^c
has sub-classes: modification rescoring:false localization rate^c

modification probability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001876

has super-classes: modification specificity rule^c

modification rescoring:false localization rate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002507

has super-classes: modification position score^c; has regexp^op some regular expression for modification localization scoring^c; has value type^op some xsd string^c

modification specificity peptide C-term^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001190

has super-classes: modification specificity rule^c

modification specificity peptide N-term^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001189

has super-classes: modification specificity rule^c

modification specificity protein C-term^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002058

has super-classes: modification specificity rule^c

modification specificity protein N-term^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002057

has super-classes: modification specificity rule^c

modification specificity rule^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001056

has super-classes: modification parameters^c
has sub-classes: modification motif^c, modification probability^c, modification specificity peptide C-term^c, modification specificity peptide N-term^c, modification specificity protein C-term^c, modification specificity protein N-term^c

modified nucleic acid sequence^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002030

has super-classes: peptide modification details^c; has value type^op some xsd string^c

ModRes^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001013

has super-classes: PEFF file sequence entry term^c; has regexp^op some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment^c; has value type^op some xsd string^c

ModResPsi^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001012

has super-classes: PEFF file sequence entry term^c; has regexp^op some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment^c; has value type^op some xsd string^c

ModResUnimod^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001027

has super-classes: PEFF file sequence entry term^c; has regexp^op some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment^c; has value type^op some xsd string^c

modulation time^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002042

has super-classes: run attribute^c; has_units^op some u o 0000010^c; has_units^op some u o 0000031^c; has value type^op some xsd string^c

molecular beam mass spectrometry^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000226

This child of the former purgatory term mass spectrometer was made obsolete.

molecular entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000881

has super-classes: part_of^op some Proteomics Standards Initiative Mass Spectrometry Vocabularies^c
has sub-classes: atom^c, ion^c, molecule^c

molecular entity attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003033

has super-classes: part_of^op some molecular entity^c
has sub-classes: chemical formula^c

molecular entity property^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000861

has super-classes: part_of^op some molecular entity^c
has sub-classes: collisional cross sectional area^c, isoelectric point^c, molecular mass^c

molecular formula^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000866

has super-classes: chemical formula^c; has value type^op some xsd string^c

molecular ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000369

This child of the former purgatory term ion chemical type was made obsolete.

molecular mass^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000224

has super-classes: molecular entity property^c; has_units^op some u o 0000002^c; has value type^op some xsd float^c

molecule^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000859

has super-classes: molecular entity^c
has sub-classes: adduct^c, isomer^c, nucleic acid^c, peptide^c, polysaccharide^c, protein^c, small molecule^c

molecule taxonomy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001089

has super-classes: protein-level identification attribute^c; database sequence details^c; Sequence database filters^c; has value type^op some xsd string^c
has sub-classes: taxonomy nomenclature^c, taxonomy: NCBI TaxID^c, taxonomy: Swiss-Prot ID^c, taxonomy: common name^c, taxonomy: scientific name^c

molecules per cell^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002513

has super-classes: quantification datatype^c; has value type^op some xsd double^c

monoisotopic m/z deviation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003209

has super-classes: interpreted spectrum attribute^c; has_units^op some m/z^c; has_units^op some u o 0000169^c; has value type^op some xsd float^c

monoisotopic mass^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000225

This child of the former purgatory term ion attribute was made obsolete.

has super-classes: has_units^op some u o 0000002^c; has value type^op some xsd float^c

monosaccharide^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003040

has super-classes: small molecule^c

Morpheus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002661

has super-classes: analysis software^c

Morpheus:Morpheus score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002662

has super-classes: PSM-level search engine specific statistic^c; has_order^op some higher score better^c; has value type^op some xsd double^c

Morpheus:summed Morpheus score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002663

has super-classes: search engine specific score for protein groups^c; has_order^op some higher score better^c; has value type^op some xsd double^c

moving average smoothing^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000785

has super-classes: smoothing^c

moving belt^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000063

has super-classes: inlet type^c

moving wire^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000064

has super-classes: inlet type^c

MRMaid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002220

has super-classes: SRM software^c

MRMaid:peptide score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002221

has super-classes: peptide sequence-level identification attribute^c; search engine specific score for proteins^c

MRMPilot Software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000666

has super-classes: SCIEX software^c; analysis software^c; data processing software^c

MS Amanda csv format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002459

has super-classes: intermediate analysis format^c

ms level^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000511

has super-classes: spectrum attribute^c; has value type^op some xsd int^c

MS metric^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000019

has super-classes: QC metric^c
has sub-classes: MS1 metric^c, MS2 metric^c, ion source metric^c

MS run duration^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000067

has super-classes: single value^c; has_metric_category^op some ID free metric^c; has_metric_category^op some single run based metric^c; has_metric_category^op some MS metric^c; has_units^op some u o 0000010^c; has_value_concept^op some Duration^c; has value type^op some xsd float^c

MS-DIAL^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003082

has super-classes: data processing software^c; small molecule analysis software^c

MS-GF^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002047

has super-classes: analysis software^c

MS-GF+^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002048

has super-classes: analysis software^c

MS-GF:DeNovoScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002050

has super-classes: search engine specific score for proteins^c; has value type^op some xsd int^c

MS-GF:Energy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002051

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd non negative integer^c

MS-GF:EValue^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002053

has super-classes: PSM-level search engine specific statistic^c; PSM-level e-value^c; has_order^op some lower score better^c; has value type^op some xsd double^c

MS-GF:PEP^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002056

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

MS-GF:PepQValue^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002055

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

MS-GF:QValue^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002054

has super-classes: PSM-level search engine specific statistic^c; PSM-level q-value^c; has value type^op some xsd double^c

MS-GF:RawScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002049

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd int^c

MS-GF:SpecEValue^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002052

has super-classes: PSM-level search engine specific statistic^c; PSM-level e-value^c; has_order^op some lower score better^c; has value type^op some xsd double^c

ms-ms search^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001083

has super-classes: search type^c

MS-Numpress linear prediction compression^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002312

has super-classes: binary data compression type^c

MS-Numpress linear prediction compression followed by zlib compression^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002746

has super-classes: binary data compression type^c

MS-Numpress positive integer compression^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002313

has super-classes: binary data compression type^c

MS-Numpress positive integer compression followed by zlib compression^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002747

has super-classes: binary data compression type^c

MS-Numpress short logged float compression^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002314

has super-classes: binary data compression type^c

MS-Numpress short logged float compression followed by zlib compression^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002748

has super-classes: binary data compression type^c

MS/MS in Space^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000335

This child of the former purgatory term m/z Separation Method was made obsolete.

MS/MS in Time^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000334

This child of the former purgatory term m/z Separation Method was made obsolete.

MS1 density quantiles^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000061

has super-classes: n-tuple^c; has_metric_category^op some ID free metric^c; has_metric_category^op some single run based metric^c; has_metric_category^op some MS1 metric^c; has_units^op some u o 0000189^c; has_value_concept^op some Density^c; has value type^op some xsd int^c

MS1 feature area^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001844

has super-classes: feature-level quantification datatype^c; has value type^op some xsd double^c

MS1 feature maximum intensity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001843

has super-classes: feature-level quantification datatype^c; has value type^op some xsd double^c

MS1 format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002597

has super-classes: mass spectrometer file format^c

MS1 label-based analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002018

has super-classes: quantitation analysis summary^c
has sub-classes: MS1 label-based peptide level quantitation^c, MS1 label-based protein level quantitation^c, MS1 label-based proteingroup level quantitation^c, MS1 label-based raw feature quantitation^c

MS1 label-based peptide level quantitation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002002

has super-classes: MS1 label-based analysis^c; has value type^op some xsd boolean^c

MS1 label-based protein level quantitation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002003

has super-classes: MS1 label-based analysis^c; has value type^op some xsd boolean^c

MS1 label-based proteingroup level quantitation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002004

has super-classes: MS1 label-based analysis^c; has value type^op some xsd boolean^c

MS1 label-based raw feature quantitation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002001

has super-classes: MS1 label-based analysis^c; has value type^op some xsd boolean^c

MS1 metric^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000021

has super-classes: MS metric^c

MS1 quarter RT fraction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000055

has super-classes: n-tuple^c; has_metric_category^op some ID free metric^c; has_metric_category^op some single run based metric^c; has_metric_category^op some retention time metric^c; has_metric_category^op some MS1 metric^c; has_units^op some u o 0000191^c; has value type^op some xsd float^c

MS1 spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000579

has super-classes: mass spectrum^c
has sub-classes: enhanced multiply charged spectrum^c

MS1 TIC quartile ratios^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000058

has super-classes: n-tuple^c; has_metric_category^op some ID free metric^c; has_metric_category^op some single run based metric^c; has_metric_category^op some chromatogram metric^c; has_metric_category^op some MS1 metric^c; has_value_concept^op some s t a t o 0000105^c; has value type^op some xsd float^c

MS1 TIC-change quartile ratios^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000057

has super-classes: n-tuple^c; has_metric_category^op some ID free metric^c; has_metric_category^op some single run based metric^c; has_metric_category^op some chromatogram metric^c; has_metric_category^op some MS1 metric^c; has_value_concept^op some s t a t o 0000105^c; has value type^op some xsd float^c

MS2 density quantiles^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000062

has super-classes: n-tuple^c; has_metric_category^op some ID free metric^c; has_metric_category^op some single run based metric^c; has_metric_category^op some MS2 metric^c; has_units^op some u o 0000189^c; has_value_concept^op some Density^c; has value type^op some xsd int^c

MS2 format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001466

has super-classes: mass spectrometer file format^c

MS2 known precursor charges fractions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000063

the MS2-PrecZ metrics can be directly read from the table respective table rows, the ratios of IS-3 metrics must be derived from the respective table rows, IS-3A as ratio of +1 over +2, IS-3B as ratio of +3 over +2, IS-3C as +4 over +2.

has super-classes: table^c; has_column^op some charge state^c; has_column^op some u o 0000191^c; has_metric_category^op some ID free metric^c; has_metric_category^op some single run based metric^c; has_metric_category^op some ion source metric^c; has_metric_category^op some MS2 metric^c

MS2 metric^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000022

has super-classes: MS metric^c

MS2 quarter RT fraction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000056

has super-classes: n-tuple^c; has_metric_category^op some ID free metric^c; has_metric_category^op some single run based metric^c; has_metric_category^op some retention time metric^c; has_metric_category^op some MS2 metric^c; has_units^op some u o 0000191^c; has value type^op some xsd float^c

MS2 tag-based analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002023

has super-classes: quantitation analysis summary^c
has sub-classes: MS2 tag-based feature level quantitation^c, MS2 tag-based peptide level quantitation^c, MS2 tag-based protein level quantitation^c, MS2 tag-based proteingroup level quantitation^c

MS2 tag-based feature level quantitation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002024

has super-classes: MS2 tag-based analysis^c; has value type^op some xsd boolean^c

MS2 tag-based peptide level quantitation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002025

has super-classes: MS2 tag-based analysis^c; has value type^op some xsd boolean^c

MS2 tag-based protein level quantitation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002026

has super-classes: MS2 tag-based analysis^c; has value type^op some xsd boolean^c

MS2 tag-based proteingroup level quantitation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002027

has super-classes: MS2 tag-based analysis^c; has value type^op some xsd boolean^c

MS2 unknown and likely precursor charges fractions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000064

has super-classes: table^c; has_column^op some charge state^c; has_column^op some u o 0000191^c; has_metric_category^op some ID free metric^c; has_metric_category^op some single run based metric^c; has_metric_category^op some ion source metric^c; has_metric_category^op some MS2 metric^c

ms_deisotope^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002990

has super-classes: data processing software^c

msalign format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002899

has super-classes: mass spectrometer file format^c

MSDK^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002645

has super-classes: analysis software^c; data processing software^c

MSFit:Mowse score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001501

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

MSFragger^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003014

has super-classes: analysis software^c

msmsEval quality^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001358

has super-classes: spectrum quality descriptions^c; has value type^op some xsd double^c

MSn spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000580

has super-classes: mass spectrum^c
has sub-classes: time-delayed fragmentation spectrum^c

MSn-1 isolation window precursor purity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003167

has super-classes: interpreted spectrum attribute^c; has value type^op some xsd float^c

MSnbase^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002870

has super-classes: analysis software^c; data processing software^c

MSPathFinder^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002720

has super-classes: analysis software^c

MSPathFinder:EValue^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002722

has super-classes: PSM-level search engine specific statistic^c; PSM-level e-value^c; has_order^op some lower score better^c; has value type^op some xsd double^c

MSPathFinder:PepQValue^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002724

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

MSPathFinder:QValue^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002723

has super-classes: PSM-level search engine specific statistic^c; PSM-level q-value^c; has value type^op some xsd double^c

MSPathFinder:RawScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002725

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

MSPathFinder:SpecEValue^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002721

has super-classes: PSM-level search engine specific statistic^c; PSM-level e-value^c; has_order^op some lower score better^c; has value type^op some xsd double^c

MSPepSearch:score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002754

has super-classes: PSM-level search engine specific statistic^c; has_domain^op some value between 0 and 1000 inclusive^c; has_order^op some higher score better^c

msPrefix precursor recalculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000781

has super-classes: precursor recalculation^c

MSQuant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001977

has super-classes: analysis software^c

MSQuant:PTM-score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001978

has super-classes: PTM localization PSM-level statistic^c; has regexp^op some regular expression for modification localization scoring^c; has value type^op some xsd string^c

MSQuant:PTM-score threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002562

has super-classes: PTM localization score threshold^c; has value type^op some xsd double^c

multi-collector^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000115

has super-classes: detector type^c

multidimensional chromatography modulation description^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002084

has super-classes: run attribute^c
has sub-classes: two-dimensional gas chromatography with discrete modulation time steps^c, two-dimensional gas chromatography with fixed modulation time^c, two-dimensional liquid chromatography with discrete modulation time steps^c, two-dimensional liquid chromatography with fixed modulation time^c

multiphoton ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000227

has super-classes: ionization type^c

multiple enzyme combination rules^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001051

has super-classes: has value type^op some xsd string^c

multiple ion monitoring^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000098

This former purgatory term was made obsolete.

multiple peak list nativeID format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000774

Used for conversion of peak list files with multiple spectra, i.e. MGF, PKL, merged DTA files. Index is the spectrum number in the file, starting from 0.

has super-classes: native spectrum identifier format^c

multiple peak list nativeID format, combined spectra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002653

Used for conversion of peak list files with multiple spectra, i.e. MGF, PKL, merged DTA files. Index is the spectrum number in the file, starting from 0.

has super-classes: native spectrum identifier format, combined spectra^c; has value type^op some xsd string^c

multiple reaction monitoring^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000099

This term was made obsolete because it was merged with selected reaction monitoring (MS:1000206).

multiple runs based metric^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000013

has super-classes: QC metric category^c

multiple spectra based metric^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000015

has super-classes: QC metric category^c

multiple stage mass spectrometry^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000270

This child of the former purgatory term m/z Separation Method was made obsolete.

MultiQuant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000674

has super-classes: SCIEX software^c; analysis software^c; data processing software^c

MyCompoundID^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002881

has super-classes: small molecule analysis software^c

MyriMatch^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001585

has super-classes: analysis software^c

MyriMatch:MVH^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001589

has super-classes: PSM-level search engine specific statistic^c

MyriMatch:mzFidelity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001590

has super-classes: PSM-level search engine specific statistic^c

mz5 format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001881

has super-classes: mass spectrometer file format^c

mzIdentML format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002073

has super-classes: intermediate analysis format^c

mzidLib^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002237

has super-classes: analysis software^c
has sub-classes: mzidLib:CombineSearchEngines^c, mzidLib:Csv2Mzid^c, mzidLib:FalseDiscoveryRate^c, mzidLib:InsertMetaDataFromFasta^c, mzidLib:Mzidentml2Csv^c, mzidLib:Omssa2Mzid^c, mzidLib:Perform emPAI on mzid^c, mzidLib:ProteoGrouper^c, mzidLib:Tandem2Mzid^c, mzidLib:Thresholder^c

mzidLib:CombineSearchEngines^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002246

has super-classes: mzidLib^c

mzidLib:Csv2Mzid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002240

has super-classes: mzidLib^c

mzidLib:FalseDiscoveryRate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002244

has super-classes: mzidLib^c

mzidLib:InsertMetaDataFromFasta^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002247

has super-classes: mzidLib^c

mzidLib:Mzidentml2Csv^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002245

has super-classes: mzidLib^c

mzidLib:Omssa2Mzid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002238

has super-classes: mzidLib^c

mzidLib:Perform emPAI on mzid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002243

has super-classes: mzidLib^c

mzidLib:ProteoGrouper^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002241

has super-classes: mzidLib^c

mzidLib:Tandem2Mzid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002239

has super-classes: mzidLib^c

mzidLib:Thresholder^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002242

has super-classes: mzidLib^c

MZmine^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002342

has super-classes: analysis software^c; data processing software^c

mzML format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000584

has super-classes: mass spectrometer file format^c

mzML unique identifier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001530

A unique identifier of a spectrum stored in an mzML file.

has super-classes: spectra data details^c

mzML unique identifier, combined spectra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002657

A unique identifier of a spectrum stored in an mzML file.

has super-classes: native spectrum identifier format, combined spectra^c; has value type^op some xsd string^c

mzMLb format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002838

has super-classes: mass spectrometer file format^c

mzQC format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003160

has super-classes: quality control data format^c

mzQuantML format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002075

has super-classes: quantification file format^c

mzR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002869

has super-classes: analysis software^c; data processing software^c

MzStar^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000542

has super-classes: data processing software^c

mzTab^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002601

has super-classes: tab delimited text format^c

MzWiff^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000591

has super-classes: data processing software^c

n-terminal flanking residue^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001112

has super-classes: peptide sequence-level identification attribute^c; peptide-to-protein mapping attribute^c; has value type^op some xsd string^c

n-tuple^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000004

has super-classes: QC metric value type^c
has sub-classes: MS1 TIC quartile ratios^c, MS1 TIC-change quartile ratios^c, MS1 density quantiles^c, MS1 quarter RT fraction^c, MS2 density quantiles^c, MS2 quarter RT fraction^c, TIC quarters RT fraction^c, XIC-FWHM quantiles^c, XIC-Height quartile ratios^c, m/z acquisition range^c, retention time acquisition range^c

NA sequence^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001343

has super-classes: database sequence details^c

named element^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003025

has super-classes: part_of^op some Proteomics Standards Initiative Mass Spectrometry Vocabularies^c
has sub-classes: named element in mzIdentML^c, named element in mzML^c

named element in mzIdentML^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003026

has super-classes: named element^c
has sub-classes: Fixed modification^c, Variable modification^c

named element in mzML^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003027

has super-classes: named element^c

nanoACQUITY UPLC^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001766

has super-classes: Waters instrument model^c

nanoACQUITY UPLC System with 1D Technology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001767

has super-classes: Waters instrument model^c

nanoACQUITY UPLC with HDX Technology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001768

has super-classes: Waters instrument model^c

nanoelectrospray^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000398

has super-classes: electrospray ionization^c

nanospray inlet^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000485

has super-classes: electrospray inlet^c

native source path^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002046

has super-classes: spectrum generation information^c; has value type^op some xsd string^c

native spectrum identifier format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000767

has super-classes: part_of^op some source data file^c
has sub-classes: Agilent MassHunter nativeID format^c, Bruker BAF nativeID format^c, Bruker Container nativeID format^c, Bruker FID nativeID format^c, Bruker TDF nativeID format^c, Bruker U2 nativeID format^c, Bruker/Agilent YEP nativeID format^c, Mascot query number^c, SCIEX TOF/TOF T2D nativeID format^c, SCIEX TOF/TOF nativeID format^c, Scaffold nativeID format^c, Shimadzu Biotech QTOF nativeID format^c, Shimadzu Biotech nativeID format^c, Thermo nativeID format^c, UIMF nativeID format^c, WIFF nativeID format^c, Waters nativeID format^c, multiple peak list nativeID format^c, no nativeID format^c, scan number only nativeID format^c, single peak list nativeID format^c, spectrum from ProteinScape database nativeID format^c, spectrum from database integer nativeID format^c, spectrum from database string nativeID format^c, spectrum identifier nativeID format^c

native spectrum identifier format, combined spectra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002646

has super-classes: part_of^op some source data file^c
has sub-classes: Bruker BAF nativeID format, combined spectra^c, Bruker FID nativeID format, combined spectra^c, Bruker TDF nativeID format, combined spectra^c, Bruker/Agilent YEP nativeID format, combined spectra^c, Thermo nativeID format, combined spectra^c, WIFF nativeID format, combined spectra^c, Waters nativeID format, combined spectra^c, multiple peak list nativeID format, combined spectra^c, mzML unique identifier, combined spectra^c, scan number only nativeID format, combined spectra^c, single peak list nativeID format, combined spectra^c, spectrum identifier nativeID format, combined spectra^c

NBRF PIR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001353

has super-classes: database file formats^c

NCBI .p^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001350

has super-classes: database file formats^c

NcbiTaxId^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001003

has super-classes: PEFF file sequence entry term^c; has value type^op some xsd int^c

negative electron transfer dissociation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003247

has super-classes: dissociation method^c

negative ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000370

This child of the former purgatory term ion chemical type was made obsolete.

Negative Ion chemical ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000271

has super-classes: ionization type^c

negative ion mode^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000076

This term was made obsolete because it was replaced by negative scan (MS:1000129).

negative mode adduct ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002808

has super-classes: adduct ion^c
has sub-classes: M-H ion^c

negative scan^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000129

has super-classes: scan polarity^c; chromatogram attribute^c

neptune^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000179

has super-classes: Thermo Finnigan instrument model^c

neutral loss^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000336

has super-classes: modification parameters^c; has value type^op some xsd string^c
has sub-classes: H2O neutral loss^c, H3PO4 neutral loss^c, NH3 neutral loss^c

neutral loss^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001061

has super-classes: modification parameters^c

neutralization reionization mass spectrometry^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000272

has super-classes: ionization type^c

NG-5400^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000180

has super-classes: Waters instrument model^c

NH3 neutral loss^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002456

This term was obsoleted because it should be replaced by MS:1000336 with value NH3.

has super-classes: neutral loss^c; ion series considered in search^c

nier-johnson geometry^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000296

This former purgatory term was made obsolete.

NIST msp comment^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003102

has super-classes: spectrum attribute^c; has value type^op some xsd string^c

NIST MSP format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002751

has super-classes: database file formats^c

NIST MSPepSearch^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002750

has super-classes: analysis software^c

nitrogen rule^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000228

This child of the former purgatory term ion reaction was made obsolete.

no cleavage^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001955

has super-classes: cleavage agent name^c

no combination^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000795

has super-classes: spectra combination^c

no compression^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000576

has super-classes: binary data compression type^c

No fixed modifications searched^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002453

has super-classes: common search engine input parameter^c

no modification threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002672

has super-classes: PTM localization score threshold^c

no nativeID format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000824

has super-classes: native spectrum identifier format^c

no peptide-level threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002502

has super-classes: peptide sequence-level identification attribute^c

no PSM threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002501

has super-classes: PSM-level result list statistic^c

No PTMs are included in the dataset^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002864

has super-classes: Experiment additional parameter^c

no special processing^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002495

has super-classes: special processing^c

no threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001494

has super-classes: statistical threshold^c

No variable modifications searched^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002454

has super-classes: common search engine input parameter^c

NoEnzyme^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001091

This term was made obsolete because it is ambiguous and is replaced by NoCleavage (MS:1001955) and unspecific cleavage (MS:1001956).

has super-classes: cleavage agent name^c

noise array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002742

has super-classes: binary data array^c

NoiseFilter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000762

This term was made obsolete, because it is replaced by the terms under the 'TOPP noise filter' (MS:1002131) branch.

has super-classes: TOPP software^c

nominal mass^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000229

This child of the former purgatory term ion attribute was made obsolete.

has super-classes: has_units^op some u o 0000002^c; has value type^op some xsd float^c

Non peer-reviewed dataset^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002855

has super-classes: Experiment additional parameter^c

non-classical ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000371

This child of the former purgatory term ion chemical type was made obsolete.

non-identified ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001240

has super-classes: product ion attribute^c

non-leading protein^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002402

has super-classes: protein group or subset relationship^c

non-standard data array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000786

has super-classes: binary data array^c; has value type^op some xsd string^c

None ??^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000104

This term was made obsolete because .

normalization to mean of sum of all proteins^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001862

has super-classes: quantification data processing^c

normalized collision energy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000138

has super-classes: precursor activation attribute^c; has_units^op some u o 0000187^c; has value type^op some xsd float^c
has sub-classes: percent collision energy ramp end^c, percent collision energy ramp start^c

normalized peptide value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001850

has super-classes: peptide-level quantification datatype^c; has value type^op some xsd double^c

normalized protein value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001852

has super-classes: protein-level quantification datatype^c; has value type^op some xsd double^c

normalized retention time^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000896

has super-classes: retention time^c; has_units^op some u o 0000010^c; has_units^op some u o 0000031^c; has value type^op some xsd float^c

normalized spectral abundance factor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002547

has super-classes: quantification datatype^c

normalized XIC area^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001859

has super-classes: quantification datatype^c; has value type^op some xsd double^c

Novor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002984

has super-classes: analysis software^c

nth generation product ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000337

This child of the former purgatory term product ion was made obsolete.

nth generation product ion scan^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000338

This former purgatory term was made obsolete.

nth generation product ion spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000339

This term was made obsolete because it was merged with MSn spectrum (MS:1000580).

nucleic acid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003041

has super-classes: molecule^c

nucleic acid base modification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002028

has super-classes: peptide modification details^c; has value type^op some xsd string^c

null-terminated ASCII string^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001479

has super-classes: binary data type^c

number of chromatograms^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000071

has super-classes: single value^c; has_metric_category^op some ID free metric^c; has_metric_category^op some single run based metric^c; has_metric_category^op some chromatogram metric^c; has_units^op some u o 0000189^c; has value type^op some xsd int^c

number of data points^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003060

has super-classes: spectrum property^c

number of decoy sequences^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002437

has super-classes: search database details^c; has value type^op some xsd positive integer^c

number of detector counts^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000131

has super-classes: intensity unit^c

number of distinct protein sequences^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002408

has super-classes: protein group-level result list attribute^c; has value type^op some xsd int^c

number of enzymatic termini^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003048

has super-classes: peptide-to-protein mapping attribute^c

number of mantissa bits truncated^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003092

has super-classes: binary data compression parameter^c; has value type^op some xsd positive integer^c

number of matched peaks^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001121

has super-classes: peptide sequence-level identification attribute^c; has value type^op some xsd non negative integer^c

number of missed cleavages^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003044

has super-classes: peptide attribute^c

number of molecular hypothesis considered^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001177

has super-classes: search statistics^c; has value type^op some xsd non negative integer^c

number of MS1 spectra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000059

has super-classes: single value^c; has_metric_category^op some ID free metric^c; has_metric_category^op some single run based metric^c; has_metric_category^op some MS1 metric^c; has_units^op some u o 0000189^c; has value type^op some xsd int^c

number of MS2 spectra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000060

has super-classes: single value^c; has_metric_category^op some ID free metric^c; has_metric_category^op some single run based metric^c; has_metric_category^op some MS2 metric^c; has_units^op some u o 0000189^c; has value type^op some xsd int^c

number of peaks^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003059

has super-classes: spectrum property^c

number of peaks submitted^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001124

has super-classes: peptide sequence-level identification attribute^c; has value type^op some xsd non negative integer^c

number of peaks used^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001123

has super-classes: peptide sequence-level identification attribute^c; has value type^op some xsd non negative integer^c

number of peptide seqs compared to each spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001030

has super-classes: search database details^c; spectrum identification result details^c; has value type^op some xsd non negative integer^c

number of precursor ion observations^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002228

has super-classes: SRM transition attribute^c; has value type^op some xsd int^c

number of product ion observations^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002227

has super-classes: SRM transition attribute^c; has value type^op some xsd int^c

number of replicate spectra available^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003069

has super-classes: spectrum aggregation attribute^c

number of replicate spectra used^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003070

has super-classes: spectrum aggregation attribute^c

number of residues^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003043

has super-classes: peptide attribute^c

number of sequences searched^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001029

has super-classes: search database details^c; has value type^op some xsd positive integer^c

number of spectra searched^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002434

has super-classes: search input details^c; has value type^op some xsd int^c

number of unmatched peaks^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001362

has super-classes: PSM-level attribute^c; has value type^op some xsd non negative integer^c

NumberOfEntries^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000015

has super-classes: PEFF file header section term^c; has value type^op some xsd integer^c

numerator data type attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002151

has super-classes: quantification object attribute^c

numeric attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003173

has super-classes: object attribute^c; has value type^op some xsd float^c; has value type^op some xsd int^c

object attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000547

has super-classes: part_of^op some spectrum generation information^c
has sub-classes: chromatogram attribute^c, contact attribute^c, inlet attribute^c, instrument attribute^c, ion selection attribute^c, isolation window attribute^c, numeric attribute^c, run attribute^c, sample attribute^c, sample preparation^c, scan attribute^c, selection window attribute^c

observed mass accuracy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000072

has super-classes: has_metric_category^op some ID based metric^c; has_metric_category^op some single spectrum based metric^c; has_metric_category^op some MS2 metric^c; has_units^op some u o 0000169^c; has_value_concept^op some accuracy^c

observed spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003073

has super-classes: spectrum origin type^c

OBSOLETE charge number^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000211

has super-classes: has value type^op some xsd int^c

odd-electron rule^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000230

This child of the former purgatory term ion reaction was made obsolete.

offset voltage^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001879

has super-classes: source attribute^c; has_units^op some u o 0000218^c; has value type^op some xsd float^c

OMEGA^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000181

has super-classes: IonSpec instrument model^c

OMEGA-2001^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000182

has super-classes: IonSpec instrument model^c

OmniFlex^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000183

has super-classes: Bruker Daltonics flex series^c

OMSSA^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001475

has super-classes: analysis software^c

OMSSA csv format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001399

has super-classes: intermediate analysis format^c

OMSSA e-value threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001449

has super-classes: OMSSA input parameter^c; has value type^op some xsd double^c

OMSSA input parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002099

has super-classes: search engine specific input parameter^c
has sub-classes: OMSSA e-value threshold^c

OMSSA xml format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001400

has super-classes: intermediate analysis format^c

OMSSA:evalue^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001328

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

OMSSA:pvalue^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001329

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

one sample run^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001818

has super-classes: raw file attribute^c

onium ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000372

This child of the former purgatory term ion chemical type was made obsolete.

open split^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000065

has super-classes: inlet type^c

OpenMS file format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002822

has super-classes: file format^c
has sub-classes: consensusXML^c, featureXML^c, idXML^c

OpenMS:Best PSM Score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003114

has super-classes: search engine specific peptide sequence-level identification statistic^c; has value type^op some xsd double^c

OpenMS:ConsensusID PEP^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003113

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

OpenMS:LFQ intensity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003120

has super-classes: quantification datatype^c; has value type^op some xsd double^c

OpenMS:LFQ spectral count^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003121

has super-classes: quantification datatype^c; has value type^op some xsd double^c

OpenMS:Target-decoy peptide q-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003116

has super-classes: search engine specific peptide sequence-level identification statistic^c; has value type^op some xsd double^c

OpenMS:Target-decoy protein q-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003117

has super-classes: search engine specific score for proteins^c; has value type^op some xsd double^c

OpenMS:Target-decoy PSM q-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003115

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

OpenPepXL^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003023

has super-classes: TOPP software^c

OpenPepXL:score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003024

has super-classes: PSM-level search engine specific statistic^c; search engine specific score^c; has_order^op some higher score better^c; has value type^op some xsd double^c

OpenXQuest^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002673

has super-classes: TOPP software^c

OpenXQuest:combined score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002681

has super-classes: PSM-level search engine specific statistic^c; search engine specific score^c; has_order^op some higher score better^c; has value type^op some xsd double^c

OpenXQuest:intsum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002685

has super-classes: PSM-level search engine specific statistic^c; search engine specific score^c; has_domain^op some value greater than zero^c; has_order^op some higher score better^c; has value type^op some xsd double^c

OpenXQuest:match-odds^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002684

has super-classes: PSM-level search engine specific statistic^c; search engine specific score^c; has_domain^op some value greater than zero^c; has_order^op some higher score better^c; has value type^op some xsd double^c

OpenXQuest:wTIC^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002686

has super-classes: PSM-level search engine specific statistic^c; search engine specific score^c; has_domain^op some value between 0 and 1 inclusive^c; has_order^op some higher score better^c; has value type^op some xsd double^c

OpenXQuest:xcorr common^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002683

has super-classes: PSM-level search engine specific statistic^c; search engine specific score^c; has_order^op some higher score better^c; has value type^op some xsd double^c

OpenXQuest:xcorr xlink^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002682

has super-classes: PSM-level search engine specific statistic^c; search engine specific score^c; has_order^op some higher score better^c; has value type^op some xsd double^c

OptionalTagDef^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000023

has super-classes: PEFF file header section term^c; has value type^op some xsd string^c

orbitrap^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000484

has super-classes: mass analyzer type^c

Orbitrap Eclipse^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003029

has super-classes: Thermo Scientific instrument model^c

Orbitrap Exploris 120^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003095

has super-classes: Thermo Scientific instrument model^c

Orbitrap Exploris 240^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003094

has super-classes: Thermo Scientific instrument model^c

Orbitrap Exploris 480^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003028

has super-classes: Thermo Scientific instrument model^c

Orbitrap Fusion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002416

has super-classes: Thermo Scientific instrument model^c

Orbitrap Fusion ETD^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002417

has super-classes: Thermo Scientific instrument model^c

Orbitrap Fusion Lumos^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002732

has super-classes: Thermo Scientific instrument model^c

Orbitrap ID-X^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003112

has super-classes: Thermo Scientific instrument model^c

Original data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002868

has super-classes: Experiment additional parameter^c

original nucleic acid sequence^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002029

has super-classes: peptide modification details^c; has value type^op some xsd string^c

orthogonal extraction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000317

This child of the former purgatory term m/z Separation Method was made obsolete.

Other type file URI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002851

has super-classes: Associated file URI^c; has value type^op some xsd string^c

Outlier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C79083

has super-classes: Conceptual Entity^c

overlayer MALDI sample preparation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001990

has super-classes: matrix application type^c

p-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001191

This term was made obsolete because now is split into peptide and protein terms.

has super-classes: peptide sequence-level identification statistic^c; protein identification confidence metric^c; has value type^op some xsd double^c

p-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002072

has super-classes: quantification datatype^c; has_domain^op some value between 0 and 1 inclusive^c; has value type^op some xsd double^c
has sub-classes: ANOVA p-value^c, t-test p-value^c

p-value (protein diff from 1 randomly)^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001136

This term was made obsolete because it is replaced by 't-test p-value' (MS:1001855).

has super-classes: protein-level quantification datatype^c; has value type^op some xsd double^c

PAnalyzer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002076

has super-classes: analysis software^c

PAnalyzer:ambiguous group member^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002216

has super-classes: protein inference confidence category^c; has value type^op some xsd string^c

PAnalyzer:conclusive protein^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002213

has super-classes: protein inference confidence category^c; has value type^op some xsd string^c

PAnalyzer:indistinguishable protein^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002214

has super-classes: protein inference confidence category^c; has value type^op some xsd string^c

PAnalyzer:non-conclusive protein^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002215

has super-classes: protein inference confidence category^c; has value type^op some xsd string^c

Panorama Public dataset identifier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002872

has super-classes: external reference identifier^c; has value type^op some xsd string^c

Panorama Public dataset URI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002873

has super-classes: external reference identifier^c; has value type^op some xsd any u r i^c

paper spray ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003235

has super-classes: ionization type^c

Paragon input parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002421

has super-classes: search engine specific input parameter^c
has sub-classes: Paragon: FDR analysis^c, Paragon: ID focus^c, Paragon: background correction^c, Paragon: bias correction^c, Paragon: channel to use as denominator in ratios^c, Paragon: cysteine alkylation^c, Paragon: instrument setting^c, Paragon: quantitation^c, Paragon: sample type^c, Paragon: search effort^c, Paragon:special factor^c

Paragon: background correction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002429

has super-classes: Paragon input parameter^c; has value type^op some xsd boolean^c

Paragon: bias correction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002430

has super-classes: Paragon input parameter^c; has value type^op some xsd boolean^c

Paragon: channel to use as denominator in ratios^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002431

has super-classes: Paragon input parameter^c; has value type^op some xsd string^c

Paragon: cysteine alkylation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002423

has super-classes: Paragon input parameter^c; has value type^op some xsd string^c

Paragon: digestion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002436

has super-classes: search input details^c; has value type^op some xsd string^c

Paragon: FDR analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002427

has super-classes: Paragon input parameter^c; has value type^op some xsd boolean^c

Paragon: ID focus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002426

has super-classes: Paragon input parameter^c; has value type^op some xsd string^c

Paragon: instrument setting^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002424

has super-classes: Paragon input parameter^c; has value type^op some xsd string^c

Paragon: modified data dictionary or parameter translation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002433

has super-classes: search engine specific input metadata^c; has value type^op some xsd boolean^c

Paragon: quantitation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002428

has super-classes: Paragon input parameter^c; has value type^op some xsd boolean^c

Paragon: sample type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002422

has super-classes: Paragon input parameter^c; has value type^op some xsd string^c

Paragon: search effort^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002425

has super-classes: Paragon input parameter^c; has value type^op some xsd string^c

Paragon:confidence^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001167

has super-classes: search engine specific score for proteins^c; has value type^op some xsd double^c

Paragon:contrib^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001170

has super-classes: search engine specific score for proteins^c; has value type^op some xsd double^c

Paragon:expression change p-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001169

has super-classes: search engine specific score for proteins^c; has value type^op some xsd double^c

Paragon:expression error factor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001168

has super-classes: search engine specific score for proteins^c; has value type^op some xsd double^c

Paragon:score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001166

has super-classes: search engine specific score for proteins^c; has value type^op some xsd double^c

Paragon:special factor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002447

has super-classes: Paragon input parameter^c; has value type^op some xsd string^c

Paragon:total protscore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001165

has super-classes: search engine specific score for proteins^c; search engine specific score for protein groups^c; has value type^op some xsd double^c

Paragon:unused protscore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001164

has super-classes: search engine specific score for proteins^c; search engine specific score for protein groups^c; has value type^op some xsd double^c

param: a ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001108

has super-classes: ion series considered in search^c

param: a ion-H2O DEPRECATED^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001148

has super-classes: ions series considered in search^c

param: a ion-NH3 DEPRECATED^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001146

has super-classes: ions series considered in search^c

param: b ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001118

has super-classes: ion series considered in search^c

param: b ion-H2O DEPRECATED^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001150

has super-classes: ions series considered in search^c

param: b ion-H3PO4 DEPRECATED^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002450

has super-classes: ions series considered in search^c

param: b ion-NH3 DEPRECATED^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001149

has super-classes: ions series considered in search^c

param: c ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001119

has super-classes: ion series considered in search^c

param: d ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001258

has super-classes: ion series considered in search^c

param: immonium ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001259

has super-classes: ion series considered in search^c

param: internal ya ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001407

has super-classes: ion series considered in search^c

param: internal yb ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001406

has super-classes: ion series considered in search^c

param: v ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001257

has super-classes: ion series considered in search^c

param: w ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001260

has super-classes: ion series considered in search^c

param: x ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001261

has super-classes: ion series considered in search^c

param: y ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001262

has super-classes: ion series considered in search^c

param: y ion-H2O DEPRECATED^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001152

This term was made obsolete - use MS:1001262 and MS:1002455 instead.

has super-classes: ions series considered in search^c

param: y ion-H3PO4 DEPRECATED^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002451

has super-classes: ions series considered in search^c

param: y ion-NH3 DEPRECATED^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001151

has super-classes: ions series considered in search^c

param: z ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001263

has super-classes: ion series considered in search^c

param: z+1 ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001408

has super-classes: ion series considered in search^c

param: z+2 ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001409

has super-classes: ion series considered in search^c

parameter file^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000740

has super-classes: mass spectrometer file format^c

parent mass type average^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001212

has super-classes: mass type settings^c

parent mass type mono^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001211

has super-classes: mass type settings^c

partial charge transfer reaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000436

This child of the former purgatory term ion reaction was made obsolete.

particle beam^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000066

has super-classes: inlet type^c

PASSEL experiment URI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002420

has super-classes: external reference identifier^c; has value type^op some xsd any u r i^c

PASSEL transition group browser URI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002031

has super-classes: external reference identifier^c; has value type^op some xsd any u r i^c

PatternLab^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003108

has super-classes: quantitation software name^c; analysis software^c

paul ion trap^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000297

This term was made obsolete because it is redundant to quadrupole ion trap.

PDA spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000620

This term was made obsolete because it was replaced by absorption spectrum (MS:1000806).

has super-classes: data file content^c; spectrum type^c

PE^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001009

has super-classes: PEFF file sequence entry term^c; has value type^op some xsd int^c

peak^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000231

has super-classes: part_of^op some spectrum^c
has sub-classes: base peak^c, isotopic ion MS peak^c, isotopomer peak^c

peak area^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001845

This term was made obsolete because it was a duplication of MS:1001844.

has super-classes: quantification datatype^c; has value type^op some xsd double^c

peak attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003254

has super-classes: part_of^op some peak^c
has sub-classes: pre-decharged charge state^c

peak intensity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000042

has super-classes: ion selection attribute^c; has_units^op some u o 0000269^c; has value type^op some xsd float^c; part_of^op some peak^c; has_units^op some number of detector counts^c; has_units^op some percent of base peak^c; has_units^op some counts per second^c; has_units^op some percent of base peak times 100^c

peak intensity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000232

This term was made obsolete because it was replaced by base peak intensity (MS:1000505).

peak intensity rank^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000906

has super-classes: ion selection attribute^c; has value type^op some xsd positive integer^c; part_of^op some peak^c

peak intensity transform^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003240

has super-classes: data processing action^c
has sub-classes: rank transform^c, square root transform^c

Peak list file URI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002850

has super-classes: Associated file URI^c; has value type^op some xsd string^c

peak list raw scans^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000798

This is the preferred storage place for the spectrum RAWSCANS attribute from an MGF peak list.

has super-classes: spectrum identification result details^c; spectrum property^c; has value type^op some xsd string^c

peak list scans^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000797

This is the preferred storage place for the spectrum SCANS attribute from an MGF peak list.

has super-classes: spectrum identification result details^c; spectrum property^c; has value type^op some xsd string^c

peak picking^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000035

has super-classes: data processing action^c
has sub-classes: area peak picking^c, height peak picking^c

peak targeting suitability rank^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000907

has super-classes: ion selection attribute^c; has value type^op some xsd positive integer^c; part_of^op some peak^c

PeakForest^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003232

has super-classes: analysis software^c; small molecule analysis software^c; library creation software^c

PeakPicker^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000763

This term was made obsolete, because it is replaced by the terms under the 'TOPP peak picker' (MS:1002134) branch.

has super-classes: TOPP software^c

PEAKS Node^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001948

has super-classes: quantitation software name^c; analysis software^c; data processing software^c

PEAKS Online^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001947

has super-classes: quantitation software name^c; analysis software^c; data processing software^c

PEAKS Studio^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001946

has super-classes: quantitation software name^c; analysis software^c; data processing software^c

PEAKS:inChorusPeptideScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002448

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

PEAKS:inChorusProteinScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002449

has super-classes: search engine specific score for proteins^c; has value type^op some xsd double^c

PEAKS:peptideScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001950

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

PEAKS:proteinScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001951

has super-classes: search engine specific score for proteins^c; has value type^op some xsd double^c

Peer-reviewed dataset^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002854

has super-classes: Experiment additional parameter^c

PEFF CV term^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000001

has super-classes: part_of^op some Proteomics Standards Initiative Mass Spectrometry Vocabularies^c
has sub-classes: PEFF file header section term^c, PEFF file sequence entry term^c

PEFF file header section term^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000002

has super-classes: PEFF CV term^c
has sub-classes: Conversion^c, DatabaseDescription^c, DbDate^c, DbDescription^c, DbName^c, DbSource^c, DbVersion^c, Decoy^c, GeneralComment^c, HasAnnotationIdentifiers^c, NumberOfEntries^c, OptionalTagDef^c, Prefix^c, ProteoformDb^c, SequenceType^c, SpecificKey^c, SpecificValue^c

PEFF file sequence entry term^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000003

has super-classes: PEFF CV term^c
has sub-classes: AltAC^c, CC^c, Comment^c, Conflict^c, Crc64^c, DbUniqueId^c, DisulfideBond^c, Domain^c, EV^c, GName^c, GO^c, ID^c, KW^c, Length^c, ModRes^c, ModResPsi^c, ModResUnimod^c, NcbiTaxId^c, PE^c, PEFF molecule processing keyword^c, PName^c, Processed^c, Proteoform^c, SV^c, SeqStatus^c, TaxName^c, Variant^c, VariantComplex^c, VariantSimple^c, XRef^c

PEFF format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001462

has super-classes: database file formats^c

PEFF molecule processing keyword^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001032

has super-classes: PEFF file sequence entry term^c
has sub-classes: initiator methionine^c, mature protein^c, propeptide^c, signal peptide^c, transit peptide^c

Pegasus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001803

has super-classes: LECO instrument model^c

Pegasus 4D^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001945

has super-classes: LECO instrument model^c

Pegasus BT^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002719

has super-classes: LECO instrument model^c

Pegasus HRT^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001801

has super-classes: LECO instrument model^c

Pegasus III^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002278

has super-classes: LECO instrument model^c

penning ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000399

has super-classes: ionization type^c

pep:FDR threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001448

has super-classes: peptide-level statistical threshold^c; has value type^op some xsd double^c

PepFinder^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002524

has super-classes: data processing software^c

Pepitome^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001588

has super-classes: analysis software^c

PepNovo^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002982

has super-classes: analysis software^c

PepsinA^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001311

has super-classes: cleavage agent name^c; has regexp^op some (?<=[FL])^c

peptide^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000860

has super-classes: molecule^c
has sub-classes: peptidoform^c, razor peptide^c

peptide accession number^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003244

has super-classes: peptidoform attribute^c; has value type^op some xsd string^c

peptide attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000887

has super-classes: part_of^op some peptide^c
has sub-classes: number of missed cleavages^c, number of residues^c, peptide-to-protein mapping^c

peptide attribute calculation software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000873

has super-classes: software^c
has sub-classes: SSRCalc^c

peptide consensus attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002116

has super-classes: quantification object attribute^c

peptide consensus list attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002115

has super-classes: quantification object attribute^c

peptide consensus m/z^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002065

has super-classes: peptide-level quantification datatype^c; has value type^op some xsd double^c

peptide consensus RT^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002064

has super-classes: peptide-level quantification datatype^c; has value type^op some xsd double^c

peptide descriptions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001355

has super-classes: peptide sequence-level identification attribute^c

peptide end on chromosome^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002640

has super-classes: proteogenomics attribute^c; has value type^op some xsd int^c

peptide exon count^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002641

has super-classes: proteogenomics attribute^c; has value type^op some xsd int^c

peptide exon nucleotide sizes^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002642

has super-classes: proteogenomics attribute^c; has value type^op some xsd string^c

peptide group ID^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002520

has super-classes: peptide sequence-level identification attribute^c; has value type^op some xsd string^c

peptide ion interpretation format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003104

has super-classes: ion interpretation format^c

peptide ion-level spectral count^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002734

has super-classes: peptide-level quantification datatype^c; has value type^op some xsd int^c

peptide level score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002499

This term was obsoleted because it was never intended to go in the CV.

has super-classes: search engine specific peptide sequence-level identification statistic^c

peptide modification details^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001471

has super-classes: part_of^op some spectrum interpretation^c
has sub-classes: PTM scoring algorithm version^c, fragment neutral loss^c, modified nucleic acid sequence^c, nucleic acid base modification^c, original nucleic acid sequence^c, precursor neutral loss^c, unidentified modification monoisotopic mass delta^c, unknown modification^c

peptide passes threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002500

has super-classes: peptide sequence-level identification attribute^c; has value type^op some xsd boolean^c

peptide ratio^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001132

has super-classes: peptide-level quantification datatype^c; has value type^op some xsd double^c

peptide raw area^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001130

This term was made obsolete because it is replaced by 'MS1 feature area' (MS:1001844).

has super-classes: peptide-level quantification datatype^c; has value type^op some xsd double^c

peptide sequence-level e-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001872

has super-classes: peptide sequence-level identification statistic^c; has_domain^op some value greater than zero^c; has value type^op some xsd double^c

peptide sequence-level global confidence^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002463

has super-classes: peptide sequence-level result list statistic^c

peptide sequence-level global FDR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001364

has super-classes: peptide sequence-level result list statistic^c; has_domain^op some value between 0 and 1 inclusive^c; has value type^op some xsd double^c

peptide sequence-level global FNR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002462

has super-classes: peptide sequence-level result list statistic^c; has_domain^op some value between 0 and 1 inclusive^c

peptide sequence-level identification attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001105

has super-classes: single identification result attribute^c
has sub-classes: MRMaid:peptide score^c, PSM is used for peptide-level scoring^c, c-terminal flanking residue^c, decoy peptide^c, ions series considered^c, n-terminal flanking residue^c, no peptide-level threshold^c, number of matched peaks^c, number of peaks submitted^c, number of peaks used^c, peptide descriptions^c, peptide group ID^c, peptide passes threshold^c, peptide sequence-level identification statistic^c, peptide sharing details^c, proteogenomics attribute^c, retention time(s)^c, second-pass peptide identification^c, theoretical mass^c

peptide sequence-level identification statistic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001092

has super-classes: peptide sequence-level identification attribute^c
has sub-classes: Expect value^c, confidence score^c, local FDR^c, manual validation^c, p-value^c, peptide sequence-level e-value^c, peptide sequence-level local FDR^c, peptide sequence-level p-value^c, peptide sequence-level probability^c, search engine specific peptide sequence-level identification statistic^c

peptide sequence-level local FDR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002359

has super-classes: peptide sequence-level identification statistic^c; has_domain^op some value between 0 and 1 inclusive^c; has value type^op some xsd double^c

peptide sequence-level p-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001870

has super-classes: peptide sequence-level identification statistic^c; has_domain^op some value between 0 and 1 inclusive^c; has value type^op some xsd double^c

peptide sequence-level probability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002362

has super-classes: peptide sequence-level identification statistic^c; has_domain^op some value between 0 and 1 inclusive^c; has value type^op some xsd double^c

peptide sequence-level result list attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002702

has super-classes: result list attribute^c
has sub-classes: count of identified peptidoforms^c, peptide sequence-level result list statistic^c

peptide sequence-level result list statistic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002703

has super-classes: peptide sequence-level result list attribute^c
has sub-classes: peptide sequence-level global FDR^c, peptide sequence-level global FNR^c, peptide sequence-level global confidence^c

peptide shared in multiple proteins^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001175

has super-classes: peptide sharing details^c

peptide sharing details^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001127

has super-classes: peptide sequence-level identification attribute^c
has sub-classes: peptide shared in multiple proteins^c, peptide unique to one protein^c

peptide spectrum match scoring algorithm^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001961

has super-classes: has value type^op some xsd string^c; part_of^op some spectrum generation information^c

peptide start on chromosome^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002639

This term was obsoleted because it contains redundant info contained in term MS:1002643 - peptide start positions on chromosome.

has super-classes: proteogenomics attribute^c; has value type^op some xsd int^c

peptide start positions on chromosome^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002643

has super-classes: proteogenomics attribute^c; has value type^op some xsd string^c

peptide unique to one protein^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001363

has super-classes: peptide sharing details^c

peptide-level quantification datatype^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002737

has super-classes: quantification datatype^c
has sub-classes: MaxQuant:peptide counts (all)^c, MaxQuant:peptide counts (razor+unique)^c, MaxQuant:peptide counts (unique)^c, MaxQuant:sequence length^c, Progenesis:peptide count^c, Progenesis:peptide normalised abundance^c, Progenesis:peptide raw abundance^c, error on peptide area^c, error on peptide ratio^c, normalized peptide value^c, peptide consensus RT^c, peptide consensus m/z^c, peptide ion-level spectral count^c, peptide ratio^c, peptide raw area^c, peptide-level spectral count^c, sequence-level spectral count^c, total XIC area^c

peptide-level scoring^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002490

has super-classes: special processing^c
has sub-classes: ProteinProphet:peptide group weight^c, ProteinProphet:peptide weight^c

peptide-level spectral count^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002733

has super-classes: peptide-level quantification datatype^c; has value type^op some xsd int^c

peptide-level statistical threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002484

has super-classes: spectrum identification statistical threshold^c
has sub-classes: distinct peptide-level q-value^c, pep:FDR threshold^c

peptide-to-protein mapping^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003045

has super-classes: peptide attribute^c
has sub-classes: peptide-to-protein mapping attribute^c

peptide-to-protein mapping attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003046

has super-classes: peptide-to-protein mapping^c
has sub-classes: c-terminal flanking residue^c, n-terminal flanking residue^c, number of enzymatic termini^c, protein accession^c, protein sequence offset^c

peptide:Ascore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002551

has super-classes: PTM localization distinct peptide-level statistic^c; has regexp^op some regular expression for modification localization scoring^c; has value type^op some xsd string^c

peptide:D-Score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002553

has super-classes: PTM localization distinct peptide-level statistic^c; has regexp^op some regular expression for modification localization scoring^c; has value type^op some xsd string^c

peptide:H-Score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002552

has super-classes: PTM localization distinct peptide-level statistic^c; has regexp^op some regular expression for modification localization scoring^c; has value type^op some xsd string^c

peptide:MD-Score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002554

has super-classes: PTM localization distinct peptide-level statistic^c; has regexp^op some regular expression for modification localization scoring^c; has value type^op some xsd string^c

peptide:phosphoRS score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002550

has super-classes: PTM localization distinct peptide-level statistic^c; has regexp^op some regular expression for modification localization scoring^c; has value type^op some xsd string^c

PeptideAtlas dataset URI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002032

has super-classes: external reference identifier^c; has value type^op some xsd any u r i^c

PeptideProphet^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002287

has super-classes: Trans-Proteomic Pipeline software^c

PeptideShaker^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002458

has super-classes: analysis software^c

PeptideShaker peptide confidence^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002469

has super-classes: search engine specific score for proteins^c; has_order^op some higher score better^c; has value type^op some xsd float^c

PeptideShaker peptide confidence type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002541

has super-classes: search engine specific peptide sequence-level identification statistic^c; has value type^op some xsd string^c

PeptideShaker peptide score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002468

has super-classes: search engine specific peptide sequence-level identification statistic^c; search engine specific score for proteins^c; has_order^op some higher score better^c; has value type^op some xsd float^c

PeptideShaker protein confidence type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002542

has super-classes: single protein identification statistic^c; has value type^op some xsd string^c

PeptideShaker protein group confidence^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002471

has super-classes: search engine specific score for proteins^c; has_order^op some higher score better^c; has value type^op some xsd float^c

PeptideShaker protein group score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002470

has super-classes: search engine specific score for proteins^c; search engine specific score for protein groups^c; has_order^op some higher score better^c; has value type^op some xsd float^c

PeptideShaker PSM confidence^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002467

has super-classes: PSM-level search engine specific statistic^c; has_order^op some higher score better^c; has value type^op some xsd float^c

PeptideShaker PSM confidence type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002540

has super-classes: PSM-level identification statistic^c; has value type^op some xsd string^c

PeptideShaker PSM score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002466

has super-classes: PSM-level search engine specific statistic^c; has_order^op some higher score better^c; has value type^op some xsd float^c

PeptideShaker PTM confidence type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002539

has super-classes: PTM localization confidence metric^c; has value type^op some xsd string^c

peptidoform^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003049

has super-classes: peptide^c
has sub-classes: peptidoform ion^c

peptidoform attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003050

has super-classes: part_of^op some peptidoform^c
has sub-classes: peptide accession number^c, peptidoform group label^c, peptidoform labeling state^c, peptidoform sequence^c, retention time^c, stripped peptide sequence^c

peptidoform group label^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000893

has super-classes: peptidoform attribute^c; has value type^op some xsd string^c

peptidoform ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003051

has super-classes: peptidoform^c

peptidoform ion attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003256

has super-classes: part_of^op some peptidoform ion^c
has sub-classes: proforma peptidoform ion notation^c

peptidoform ion property^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003052

has super-classes: part_of^op some peptidoform ion^c
has sub-classes: theoretical average m/z^c, theoretical monoisotopic m/z^c

peptidoform labeling state^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000890

has super-classes: peptidoform attribute^c
has sub-classes: heavy labeled peptidoform^c, unlabeled peptidoform^c

peptidoform sequence^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000889

Make it more general as there are actually many other ways to display a modified peptide sequence.

has super-classes: peptidoform attribute^c; has value type^op some xsd string^c
has sub-classes: proforma peptidoform sequence^c

pepXML format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001421

has super-classes: intermediate analysis format^c

percent collision energy ramp end^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002219

has super-classes: normalized collision energy^c; has_units^op some u o 0000187^c; has value type^op some xsd float^c

percent collision energy ramp start^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002218

has super-classes: normalized collision energy^c; has_units^op some u o 0000187^c; has value type^op some xsd float^c

percent of base peak^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000132

has super-classes: intensity unit^c; has value type^op some xsd float^c

percent of base peak times 100^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000905

has super-classes: intensity unit^c; has value type^op some xsd float^c

Percolator^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001490

has super-classes: analysis software^c

Percolator input parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002107

has super-classes: software specific input parameter^c
has sub-classes: Percolator:Validation based on^c, Percolator:features^c

Percolator:features^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001760

has super-classes: Percolator input parameter^c; has value type^op some xsd string^c

percolator:PEP^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001493

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

percolator:Q value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001491

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

percolator:score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001492

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

Percolator:Validation based on^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002092

has super-classes: Percolator input parameter^c; has value type^op some xsd string^c

PerSeptive PKS format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001245

has super-classes: mass spectrometer file format^c

pFind^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003011

has super-classes: analysis software^c

Phenyx^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001209

has super-classes: analysis software^c

Phenyx input parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002097

has super-classes: search engine specific input parameter^c
has sub-classes: Phenyx:AC Score^c, Phenyx:Conflict Resolution^c, Phenyx:Default Parent Charge^c, Phenyx:Instrument Type^c, Phenyx:MaxPepPvalue^c, Phenyx:MinPepLength^c, Phenyx:MinPepzscore^c, Phenyx:Scoring Model^c, Phenyx:Trust Parent Charge^c, Phenyx:Turbo^c, Phenyx:Turbo:Coverage^c, Phenyx:Turbo:ErrorTol^c, Phenyx:Turbo:Series^c

Phenyx XML format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001463

has super-classes: mass spectrometer file format^c; intermediate analysis format^c

Phenyx:AC^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001388

has super-classes: search engine specific score for proteins^c; has value type^op some xsd string^c

Phenyx:AC Score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001386

has super-classes: Phenyx input parameter^c; has value type^op some xsd double^c

Phenyx:Auto^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001393

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd boolean^c

Phenyx:Conflict Resolution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001387

has super-classes: Phenyx input parameter^c; has value type^op some xsd boolean^c

Phenyx:Default Parent Charge^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001377

has super-classes: Phenyx input parameter^c; has value type^op some xsd string^c

Phenyx:ID^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001389

has super-classes: search engine specific score for proteins^c; has value type^op some xsd string^c

Phenyx:Instrument Type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001375

has super-classes: Phenyx input parameter^c; has value type^op some xsd string^c

Phenyx:MaxPepPvalue^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001385

has super-classes: Phenyx input parameter^c; has value type^op some xsd double^c

Phenyx:MinPepLength^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001383

has super-classes: Phenyx input parameter^c; has value type^op some xsd positive integer^c

Phenyx:MinPepzscore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001384

has super-classes: Phenyx input parameter^c; has value type^op some xsd double^c

Phenyx:Modif^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001398

has super-classes: PSM-level search engine specific statistic^c; search engine specific score for proteins^c; has value type^op some xsd string^c

Phenyx:NumberOfMC^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001397

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd positive integer^c

Phenyx:PepPvalue^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001396

has super-classes: PSM-level search engine specific statistic^c; search engine specific peptide sequence-level identification statistic^c; has value type^op some xsd double^c

Phenyx:Peptides1^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001391

has super-classes: search engine specific score for proteins^c; has value type^op some xsd positive integer^c

Phenyx:Peptides2^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001392

has super-classes: search engine specific score for proteins^c; has value type^op some xsd positive integer^c

Phenyx:Pepzscore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001395

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

Phenyx:Score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001390

has super-classes: search engine specific score for proteins^c; has value type^op some xsd double^c

Phenyx:Scoring Model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001376

has super-classes: Phenyx input parameter^c; has value type^op some xsd string^c

Phenyx:Trust Parent Charge^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001378

has super-classes: Phenyx input parameter^c; has value type^op some xsd string^c

Phenyx:Turbo^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001379

has super-classes: Phenyx input parameter^c; has value type^op some xsd boolean^c

Phenyx:Turbo:Coverage^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001381

has super-classes: Phenyx input parameter^c; has value type^op some xsd double^c

Phenyx:Turbo:ErrorTol^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001380

has super-classes: Phenyx input parameter^c; has value type^op some xsd double^c

Phenyx:Turbo:Series^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001382

has super-classes: Phenyx input parameter^c; has value type^op some xsd string^c

Phenyx:User^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001394

has super-classes: PSM-level search engine specific statistic^c; search engine specific score for proteins^c; has value type^op some xsd boolean^c

Philosopher^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003018

has super-classes: analysis software^c

phosphoRS score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001969

has super-classes: PTM localization PSM-level statistic^c; has regexp^op some regular expression for modification localization scoring^c; has value type^op some xsd string^c

phosphoRS score threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002567

has super-classes: PTM localization score threshold^c; has value type^op some xsd double^c

phosphoRS sequence probability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001970

has super-classes: PTM localization PSM-level statistic^c; has regexp^op some regular expression for modification localization scoring^c; has value type^op some xsd string^c

phosphoRS site probability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001971

has super-classes: PTM localization PSM-level statistic^c; has regexp^op some regular expression for modification localization scoring^c; has value type^op some xsd string^c

phosphoRS site probability threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002568

has super-classes: PTM localization score threshold^c; has value type^op some xsd double^c

photodiode array detector^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000621

has super-classes: array detector^c
has sub-classes: Acquity UPLC PDA^c

photodissociation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000435

has super-classes: dissociation method^c
has sub-classes: infrared multiphoton dissociation^c, ultraviolet photodissociation^c

photoionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000273

has super-classes: ionization type^c

photomultiplier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000116

has super-classes: detector type^c

PIA^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002387

has super-classes: analysis software^c; postprocessing software^c

PIA workflow parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002389

has super-classes: search engine specific input parameter^c; software specific input parameter^c
has sub-classes: PIA:Combined FDRScore calculated^c, PIA:FDRScore calculated^c, PIA:PSM sets created^c, PIA:filter^c, PIA:protein inference^c, PIA:protein inference filter^c, PIA:protein inference scoring^c, PIA:protein inference used PSMs^c, PIA:protein inference used score^c, PIA:used top identifications for FDR^c

PIA XML format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002388

has super-classes: intermediate analysis format^c

PIA:Combined FDRScore calculated^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002391

has super-classes: PIA workflow parameter^c; has value type^op some xsd boolean^c

PIA:FDRScore calculated^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002390

has super-classes: PIA workflow parameter^c; has value type^op some xsd boolean^c

PIA:filter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002400

has super-classes: PIA workflow parameter^c; has value type^op some xsd string^c

PIA:protein inference^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002395

has super-classes: PIA workflow parameter^c; has value type^op some xsd string^c

PIA:protein inference filter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002396

has super-classes: PIA workflow parameter^c; has value type^op some xsd string^c

PIA:protein inference scoring^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002397

has super-classes: PIA workflow parameter^c; has value type^op some xsd string^c

PIA:protein inference used PSMs^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002399

has super-classes: PIA workflow parameter^c; has value type^op some xsd string^c

PIA:protein inference used score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002398

has super-classes: PIA workflow parameter^c; has value type^op some xsd string^c

PIA:protein score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002394

has super-classes: search engine specific score for proteins^c; has_order^op some higher score better^c; has value type^op some xsd double^c

PIA:PSM sets created^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002392

has super-classes: PIA workflow parameter^c; has value type^op some xsd boolean^c

PIA:used top identifications for FDR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002393

has super-classes: PIA workflow parameter^c; has value type^op some xsd positive integer^c

PinPoint^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001912

has super-classes: Thermo Finnigan software^c; analysis software^c; data processing software^c

plasma desorption^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000134

has super-classes: dissociation method^c

plasma desorption ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000400

has super-classes: ionization type^c

Platform ICP^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000184

has super-classes: Waters instrument model^c

pmf search^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001081

has super-classes: search type^c

PName^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001002

has super-classes: PEFF file sequence entry term^c; has value type^op some xsd string^c

pNovo^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002983

has super-classes: analysis software^c

point collector^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000350

has super-classes: detector type^c

PolarisQ^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000185

has super-classes: Thermo Finnigan instrument model^c

polarity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000037

This term was made obsolete because it was redundant with the Pato Ontology term polarity (UO:0002186).

polysaccharide^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003042

has super-classes: molecule^c

PolyTools^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000727

has super-classes: Bruker software^c

positive ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000374

This child of the former purgatory term ion chemical type was made obsolete.

positive ion mode^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000077

This term was made obsolete because it was replaced by positive scan (MS:1000130).

positive mode adduct ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002807

has super-classes: adduct ion^c
has sub-classes: M+H ion^c

positive scan^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000130

has super-classes: scan polarity^c; chromatogram attribute^c

possible charge state^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000633

has super-classes: ion selection attribute^c; has value type^op some xsd int^c

post-source decay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000135

has super-classes: dissociation method^c

postacceleration detector^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000351

has super-classes: detector type^c

postprocessing software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002414

has super-classes: data processing software^c
has sub-classes: PIA^c

pre-decharged charge state^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003255

has super-classes: peak attribute^c

pre-ionization state^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000401

This child of the former purgatory term ion reaction was made obsolete.

precoated MALDI sample plate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000839

has super-classes: matrix application type^c; sample plate type^c

precursor activation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000456

has super-classes: part_of^op some spectrum^c

precursor activation attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000510

has super-classes: part_of^op some precursor activation^c
has sub-classes: Collision cell exit potential^c, activation energy^c, buffer gas^c, charge stripping^c, collision energy^c, collision gas^c, collision gas pressure^c, normalized collision energy^c, supplemental collision energy^c

precursor apex intensity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003086

has super-classes: spectrum attribute^c; intensity of precursor ion^c; has value type^op some xsd string^c

precursor ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000340

This child of the former purgatory term ion role was made obsolete.

precursor ion detection probability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002223

has super-classes: SRM transition attribute^c; has value type^op some xsd float^c

precursor ion scan^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000100

This former purgatory term was made obsolete.

precursor ion spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000341

has super-classes: mass spectrum^c

precursor neutral loss^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001525

has super-classes: peptide modification details^c; has_units^op some u o 0000221^c; has value type^op some xsd double^c

precursor recalculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000780

has super-classes: data processing action^c
has sub-classes: msPrefix precursor recalculation^c

precursor shift decoy spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003194

has super-classes: decoy spectrum^c

predicted isoelectric point^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000863

has super-classes: isoelectric point^c; has value type^op some xsd float^c

predicted retention time^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000897

has super-classes: retention time^c; has_units^op some u o 0000010^c; has_units^op some u o 0000031^c; has value type^op some xsd float^c

predicted spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003074

has super-classes: spectrum origin type^c

Prefix^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000009

has super-classes: PEFF file header section term^c; has value type^op some xsd string^c

preprocessing software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002386

has super-classes: data processing software^c

preset scan configuration^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000616

has super-classes: scan attribute^c; has value type^op some xsd string^c

pressure array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000821

has super-classes: binary data array^c; has_units^op some u o 0000110^c

pressure chromatogram^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003019

has super-classes: chromatogram type^c

previous MSn-1 scan precursor intensity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003085

has super-classes: spectrum attribute^c; intensity of precursor ion^c; has value type^op some xsd string^c

PRIDE Converter2^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002335

has super-classes: conversion software^c

PRIDE experiment URI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001929

has super-classes: external reference identifier^c; has value type^op some xsd any u r i^c

PRIDE project URI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001930

has super-classes: external reference identifier^c; has value type^op some xsd any u r i^c

PRIDE XML^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002600

has super-classes: spectrum identification result details^c; identification file format^c

principal ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000373

This child of the former purgatory term ion chemical type was made obsolete.

printed MALDI matrix preparation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000837

has super-classes: matrix application type^c

Pro BLAST^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000671

has super-classes: SCIEX software^c; analysis software^c; data processing software^c

Pro ICAT^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000669

has super-classes: SCIEX software^c; analysis software^c; data processing software^c

Pro ID^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000668

has super-classes: SCIEX software^c; analysis software^c; data processing software^c

Pro Quant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000670

has super-classes: SCIEX software^c; analysis software^c; data processing software^c

probability for proteins^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002367

has super-classes: single protein identification statistic^c; has_domain^op some value between 0 and 1 inclusive^c; has value type^op some xsd double^c

Processed^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001010

has super-classes: PEFF file sequence entry term^c; has regexp^op some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment^c; has value type^op some xsd string^c

processed data file^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003084

has super-classes: source data file^c; has value type^op some xsd string^c

ProCon^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002334

has super-classes: conversion software^c

product background^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002413

has super-classes: quantification datatype^c; has value type^op some xsd double^c

product interpretation rank^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000926

has super-classes: product ion attribute^c; has value type^op some xsd positive integer^c

product ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000342

This child of the former purgatory term ion role was made obsolete.

product ion attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001221

has super-classes: single identification result attribute^c
has sub-classes: co-eluting ion^c, fragmentation ion type^c, non-identified ion^c, product interpretation rank^c, product ion intensity^c, product ion m/z^c, product ion m/z delta^c, product ion m/z error^c, product ion mobility^c, product ion series ordinal^c

product ion detection probability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002224

has super-classes: SRM transition attribute^c; has value type^op some xsd float^c

product ion drift time^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001967

This term was made obsolete because it was replaced by ion mobility drift time (MS:1002476).

has super-classes: SRM transition attribute^c; has_units^op some u o 0000028^c; has value type^op some xsd float^c

product ion intensity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001226

has super-classes: product ion attribute^c; has_units^op some number of detector counts^c; has_units^op some percent of base peak^c; has_units^op some counts per second^c; has_units^op some percent of base peak times 100^c
has sub-classes: average product ion intensity^c, product ion intensity standard deviation^c

product ion intensity standard deviation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002226

has super-classes: product ion intensity^c; has_units^op some number of detector counts^c; has_units^op some percent of base peak^c; has_units^op some counts per second^c; has_units^op some percent of base peak times 100^c

product ion m/z^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001225

has super-classes: product ion attribute^c; has_units^op some m/z^c

product ion m/z delta^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000904

has super-classes: product ion attribute^c; has_units^op some m/z^c

product ion m/z error^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001227

has super-classes: product ion attribute^c; has_units^op some m/z^c; has_units^op some u o 0000166^c

product ion mobility^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001966

has super-classes: product ion attribute^c

product ion scan^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000101

This former purgatory term was made obsolete.

product ion series ordinal^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000903

has super-classes: product ion attribute^c; has value type^op some xsd positive integer^c

product ion spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000343

This term was made obsolete because it was merged with MSn spectrum (MS:1000580).

has super-classes: mass spectrum^c

profile spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000128

has super-classes: spectrum representation^c

ProfileAnalysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000728

has super-classes: Bruker software^c; analysis software^c; data processing software^c

proforma peptidoform ion notation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003270

has super-classes: peptidoform ion attribute^c

proforma peptidoform sequence^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003169

has super-classes: peptidoform sequence^c; has value type^op some xsd string^c

Profound:Cluster^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001499

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

Profound:ClusterRank^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001500

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd positive integer^c

Profound:z value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001498

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

Progenesis automatic alignment^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001865

has super-classes: quantification data processing^c

Progenesis LC-MS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001830

has super-classes: quantitation software name^c

Progenesis manual alignment^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001866

has super-classes: quantification data processing^c

Progenesis MetaScope score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002889

has super-classes: small molecule confidence measure^c; has value type^op some xsd float^c

Progenesis normalization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001867

has super-classes: quantification data processing^c

Progenesis QI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002879

has super-classes: small molecule analysis software^c

Progenesis QI normalised abundance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002887

has super-classes: small molecule quantification datatype^c; has value type^op some xsd double^c

Progenesis:confidence score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001894

has super-classes: quantification datatype^c; has value type^op some xsd double^c

Progenesis:feature intensity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001896

has super-classes: feature-level quantification datatype^c; has value type^op some xsd double^c

Progenesis:peptide count^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001895

has super-classes: peptide-level quantification datatype^c; has value type^op some xsd int^c

Progenesis:peptide normalised abundance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001891

has super-classes: peptide-level quantification datatype^c; has value type^op some xsd double^c

Progenesis:peptide raw abundance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001893

has super-classes: peptide-level quantification datatype^c; has value type^op some xsd double^c

Progenesis:protein group normalised abundance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002518

has super-classes: protein group-level quantification datatype^c; has value type^op some xsd double^c

Progenesis:protein group raw abundance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002519

has super-classes: protein group-level quantification datatype^c; has value type^op some xsd double^c

Progenesis:protein normalised abundance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001890

has super-classes: protein-level quantification datatype^c; has value type^op some xsd double^c

Progenesis:protein raw abundance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001892

has super-classes: protein-level quantification datatype^c; has value type^op some xsd double^c

progeny ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000344

This child of the former purgatory term ion chemical type was made obsolete.

programmer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001268

has super-classes: role type^c; has value type^op some xsd string^c

prolate traochoidal mass spectrometer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000298

This child of the former purgatory term mass spectrometer was made obsolete.

Proline^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002981

has super-classes: analysis software^c

proline endopeptidase^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001916

has super-classes: cleavage agent name^c; has regexp^op some (?<=[HKR]P)(?^c

ProLuCID^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002596

has super-classes: analysis software^c

ProLuCID:deltacn^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002535

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

ProLuCID:xcorr^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002534

has super-classes: PSM-level search engine specific statistic^c; has_order^op some higher score better^c; has value type^op some xsd double^c

propeptide^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001034

has super-classes: PEFF molecule processing keyword^c; has regexp^op some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment^c; has value type^op some xsd string^c

Property or Attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C20189

has sub-classes: Characteristic^c, Qualifier^c

proportional^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000089

This child of the former purgatory term resolution type was made obsolete.

ProSight^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003141

has super-classes: analysis software^c

ProSight input parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003136

has super-classes: search engine specific input parameter^c
has sub-classes: ProSight:Run Annotated Proteoform Search mode^c, ProSight:Run Subsequence Search mode^c, ProSight:Run delta m mode^c

ProSight:isoform Q-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003134

has super-classes: isoform-level Q-value^c; has_order^op some lower score better^c; has value type^op some xsd double^c

ProSight:protein Q-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003135

has super-classes: protein-level q-value^c; has_order^op some lower score better^c; has value type^op some xsd double^c

ProSight:proteoform Q-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003130

has super-classes: proteoform-level Q-value^c; has_order^op some lower score better^c; has value type^op some xsd double^c

ProSight:Run Annotated Proteoform Search mode^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003140

has super-classes: ProSight input parameter^c; TDPortal input parameter^c; has value type^op some xsd boolean^c

ProSight:Run delta m mode^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003138

has super-classes: ProSight input parameter^c; TDPortal input parameter^c; has value type^op some xsd boolean^c

ProSight:Run Subsequence Search mode^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003139

has super-classes: ProSight input parameter^c; TDPortal input parameter^c; has value type^op some xsd boolean^c

ProSight:spectral C-score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003128

has super-classes: PSM-level search engine specific statistic^c; has_order^op some higher score better^c; has value type^op some xsd double^c

ProSight:spectral E-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003127

has super-classes: PSM-level search engine specific statistic^c; PSM-level e-value^c; has_order^op some lower score better^c; has value type^op some xsd double^c

ProSight:spectral P-score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003126

has super-classes: PSM-level search engine specific statistic^c; has_order^op some lower score better^c; has value type^op some xsd double^c

ProSight:spectral Q-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003125

has super-classes: PSM-level search engine specific statistic^c; PSM-level q-value^c; has_order^op some lower score better^c; has value type^op some xsd double^c

prot:FDR threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001447

has super-classes: protein-level statistical threshold^c; has value type^op some xsd double^c

protein^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000882

has super-classes: molecule^c

protein accession^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000885

has super-classes: protein attribute^c; peptide-to-protein mapping attribute^c; has value type^op some xsd string^c

protein ambiguity group result details^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001147

has super-classes: protein-level identification attribute^c; search engine specific score^c

protein attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000884

has super-classes: quantification object attribute^c; part_of^op some protein^c
has sub-classes: gene name^c, protein accession^c, protein modifications^c, protein name^c, protein short name^c

protein cluster identification attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002698

has super-classes: single identification result attribute^c
has sub-classes: cluster identifier^c

protein description^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001088

has super-classes: protein-level identification attribute^c; database sequence details^c; has value type^op some xsd string^c

protein detection statistical threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002572

has super-classes: statistical threshold^c
has sub-classes: protein group-level statistical threshold^c, protein-level statistical threshold^c

protein group attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002113

has super-classes: quantification object attribute^c

protein group list attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002112

has super-classes: quantification object attribute^c

protein group or subset relationship^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001101

has super-classes: protein-level identification attribute^c
has sub-classes: anchor protein^c, family member protein^c, group member with undefined relationship OR ortholog protein^c, group representative^c, leading protein^c, marginally distinguished protein^c, non-leading protein^c, protein inference confidence category^c, sequence multiply subsumable protein^c, sequence same-set protein^c, sequence sub-set protein^c, sequence subsumable protein^c, spectrum multiply subsumable protein^c, spectrum same-set protein^c, spectrum sub-set protein^c, spectrum subsumable protein^c

protein group passes threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002415

has super-classes: protein group-level identification attribute^c; has value type^op some xsd boolean^c

protein group-level combined FDRScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002375

has super-classes: search engine specific score for protein groups^c; has_domain^op some value greater than zero but less than or equal to one^c; has value type^op some xsd double^c

protein group-level confidence^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002461

has super-classes: protein group-level identification statistic^c

protein group-level e-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002372

has super-classes: protein group-level identification statistic^c; has_domain^op some value greater than zero^c; has value type^op some xsd double^c

protein group-level FDRScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002374

has super-classes: search engine specific score for protein groups^c; has_domain^op some value greater than zero but less than or equal to one^c; has value type^op some xsd double^c

protein group-level global FDR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002369

has super-classes: protein group-level result list statistic^c; has value type^op some xsd double^c

protein group-level global FNR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002460

has super-classes: protein group-level result list statistic^c; has_domain^op some value between 0 and 1 inclusive^c

protein group-level identification attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002346

has super-classes: single identification result attribute^c
has sub-classes: protein group passes threshold^c, protein group-level identification statistic^c

protein group-level identification statistic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002348

has super-classes: protein group-level identification attribute^c
has sub-classes: protein group-level confidence^c, protein group-level e-value^c, protein group-level local FDR^c, protein group-level p-value^c, protein group-level probability^c, protein group-level q-value^c, search engine specific score for protein groups^c

protein group-level local FDR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002370

has super-classes: protein group-level identification statistic^c; has value type^op some xsd double^c

protein group-level p-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002371

has super-classes: protein group-level identification statistic^c; has_domain^op some value between 0 and 1 inclusive^c; has value type^op some xsd double^c

protein group-level probability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002376

has super-classes: protein group-level identification statistic^c; has_domain^op some value between 0 and 1 inclusive^c; has value type^op some xsd double^c

protein group-level q-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002373

has super-classes: protein group-level identification statistic^c; has_domain^op some value between 0 and 1 inclusive^c; has value type^op some xsd double^c

protein group-level quantification datatype^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002739

has super-classes: quantification datatype^c
has sub-classes: Progenesis:protein group normalised abundance^c, Progenesis:protein group raw abundance^c

protein group-level result list attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002405

has super-classes: result list attribute^c
has sub-classes: count of identified clusters^c, number of distinct protein sequences^c, protein group-level result list statistic^c

protein group-level result list statistic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002706

has super-classes: protein group-level result list attribute^c
has sub-classes: protein group-level global FDR^c, protein group-level global FNR^c

protein group-level statistical threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002486

has super-classes: protein detection statistical threshold^c

protein identification confidence metric^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001198

has super-classes: single protein identification statistic^c
has sub-classes: p-value^c

protein inference confidence category^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001600

has super-classes: protein group or subset relationship^c; has value type^op some xsd string^c
has sub-classes: PAnalyzer:ambiguous group member^c, PAnalyzer:conclusive protein^c, PAnalyzer:indistinguishable protein^c, PAnalyzer:non-conclusive protein^c

protein level PSM counts^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002153

has super-classes: protein-level quantification datatype^c; has value type^op some xsd int^c

protein list attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002114

has super-classes: quantification object attribute^c

protein modifications^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000933

has super-classes: protein attribute^c; has value type^op some xsd string^c

protein name^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000886

has super-classes: protein attribute^c; has value type^op some xsd string^c

protein rank^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001301

has super-classes: protein-level identification attribute^c; has value type^op some xsd int^c

protein ratio^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001134

has super-classes: protein-level quantification datatype^c; has value type^op some xsd double^c

protein sequence offset^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003047

has super-classes: peptide-to-protein mapping attribute^c

protein short name^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000883

has super-classes: protein attribute^c; has value type^op some xsd string^c

protein value: mean of peptide ratios^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001860

has super-classes: protein-level quantification datatype^c; has value type^op some xsd double^c

protein value: median of peptide ratios^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002067

has super-classes: protein-level quantification datatype^c; has value type^op some xsd double^c

protein value: sum of peptide values^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001851

has super-classes: protein-level quantification datatype^c; has value type^op some xsd double^c

protein-level e-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001873

has super-classes: single protein identification statistic^c; has_domain^op some value greater than zero^c; has value type^op some xsd double^c

protein-level global FDR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001214

has super-classes: protein-level result list statistic^c; has_domain^op some value between 0 and 1 inclusive^c; has value type^op some xsd double^c

protein-level identification attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001085

has super-classes: single identification result attribute^c
has sub-classes: confident distinct peptide sequences^c, confident peptide qualification^c, confident peptide sequence number^c, distinct peptide sequences^c, molecule taxonomy^c, protein ambiguity group result details^c, protein description^c, protein group or subset relationship^c, protein rank^c, sequence coverage^c, single protein identification statistic^c

protein-level local FDR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002364

has super-classes: single protein identification statistic^c; has value type^op some xsd double^c

protein-level p-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001871

has super-classes: single protein identification statistic^c; has_domain^op some value between 0 and 1 inclusive^c; has value type^op some xsd double^c

protein-level q-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001869

has super-classes: single protein identification statistic^c; has_domain^op some value between 0 and 1 inclusive^c; has value type^op some xsd double^c
has sub-classes: ProSight:protein Q-value^c

protein-level quantification datatype^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002738

has super-classes: quantification datatype^c
has sub-classes: APEX value^c, Progenesis:protein normalised abundance^c, Progenesis:protein raw abundance^c, emPAI value^c, error on protein ratio^c, normalized protein value^c, p-value (protein diff from 1 randomly)^c, protein level PSM counts^c, protein ratio^c, protein value: mean of peptide ratios^c, protein value: median of peptide ratios^c, protein value: sum of peptide values^c

protein-level result list attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002704

has super-classes: result list attribute^c
has sub-classes: count of identified proteins^c, protein-level result list statistic^c

protein-level result list statistic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002705

has super-classes: protein-level result list attribute^c
has sub-classes: protein-level global FDR^c

protein-level statistical threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002485

has super-classes: protein detection statistical threshold^c
has sub-classes: prot:FDR threshold^c

protein-pair-level global FDR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002676

has super-classes: interaction score derived from cross-linking^c; has_domain^op some value between 0 and 1 inclusive^c; has regexp^op some regular expression for interaction scores derived from cross-linking^c; has value type^op some xsd double^c

PROTEINEER^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000729

has super-classes: Bruker software^c

PROTEINEER dp^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000730

has super-classes: Bruker software^c

PROTEINEER fc^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000731

has super-classes: Bruker software^c

PROTEINEER spII^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000732

has super-classes: Bruker software^c

PROTEINEER-LC^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000733

has super-classes: Bruker software^c

ProteinExtractor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001487

has super-classes: Bruker software^c; analysis software^c

ProteinExtractor input parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002098

has super-classes: search engine specific input parameter^c
has sub-classes: ProteinExtractor:GenerateNonRedundant^c, ProteinExtractor:IncludeIdentified^c, ProteinExtractor:MascotPeptideScoreThreshold^c, ProteinExtractor:MascotUniqueScore^c, ProteinExtractor:MascotUseIdentityScore^c, ProteinExtractor:MascotWeighting^c, ProteinExtractor:MaxNumberOfProteins^c, ProteinExtractor:MaxProteinMass^c, ProteinExtractor:Methodname^c, ProteinExtractor:MinNumberOfPeptides^c, ProteinExtractor:PhenyxPeptideScoreThreshold^c, ProteinExtractor:PhenyxUniqueScore^c, ProteinExtractor:PhenyxWeighting^c, ProteinExtractor:ProteinSolverPeptideScoreThreshold^c, ProteinExtractor:ProteinSolverUniqueScore^c, ProteinExtractor:ProteinSolverWeighting^c, ProteinExtractor:SequestPeptideScoreThreshold^c, ProteinExtractor:SequestUniqueScore^c, ProteinExtractor:SequestWeighting^c, ProteinExtractor:UseMascot^c, ProteinExtractor:UsePhenyx^c, ProteinExtractor:UseProteinSolver^c, ProteinExtractor:UseSequest^c, ProteinExtractor:Weighting^c

ProteinExtractor:GenerateNonRedundant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001425

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd boolean^c

ProteinExtractor:IncludeIdentified^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001426

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd boolean^c

ProteinExtractor:MascotPeptideScoreThreshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001431

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd double^c

ProteinExtractor:MascotUniqueScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001432

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd double^c

ProteinExtractor:MascotUseIdentityScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001433

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd boolean^c

ProteinExtractor:MascotWeighting^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001434

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd double^c

ProteinExtractor:MaxNumberOfProteins^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001427

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd positive integer^c

ProteinExtractor:MaxProteinMass^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001428

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd double^c

ProteinExtractor:Methodname^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001424

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd string^c

ProteinExtractor:MinNumberOfPeptides^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001429

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd positive integer^c

ProteinExtractor:PhenyxPeptideScoreThreshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001444

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd double^c

ProteinExtractor:PhenyxUniqueScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001445

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd double^c

ProteinExtractor:PhenyxWeighting^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001446

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd double^c

ProteinExtractor:ProteinSolverPeptideScoreThreshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001440

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd double^c

ProteinExtractor:ProteinSolverUniqueScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001441

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd double^c

ProteinExtractor:ProteinSolverWeighting^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001442

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd double^c

ProteinExtractor:Score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001507

has super-classes: search engine specific score for proteins^c; has value type^op some xsd double^c

ProteinExtractor:SequestPeptideScoreThreshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001436

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd double^c

ProteinExtractor:SequestUniqueScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001437

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd double^c

ProteinExtractor:SequestWeighting^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001438

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd double^c

ProteinExtractor:UseMascot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001430

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd boolean^c

ProteinExtractor:UsePhenyx^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001443

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd boolean^c

ProteinExtractor:UseProteinSolver^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001439

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd boolean^c

ProteinExtractor:UseSequest^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001435

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd boolean^c

ProteinExtractor:Weighting^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001963

has super-classes: ProteinExtractor input parameter^c; has value type^op some xsd float^c

ProteinLynx Global Server^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000601

has super-classes: Waters software^c; analysis software^c; data processing software^c

ProteinLynx Global Server mass spectrum XML format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000614

has super-classes: mass spectrometer file format^c

ProteinLynx XML format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001566

has super-classes: intermediate analysis format^c

ProteinLynx:Ladder Score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001571

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

ProteinLynx:Log Likelihood^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001570

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

ProteinPilot Software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000663

has super-classes: SCIEX software^c; analysis software^c; data processing software^c

ProteinProphet^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002289

has super-classes: Trans-Proteomic Pipeline software^c

ProteinProphet:peptide group weight^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003017

has super-classes: search engine specific score^c; peptide-level scoring^c; has_domain^op some value between 0 and 1 inclusive^c; has_order^op some higher score better^c; has value type^op some xsd float^c

ProteinProphet:peptide weight^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003016

has super-classes: search engine specific score^c; peptide-level scoring^c; has_domain^op some value between 0 and 1 inclusive^c; has_order^op some higher score better^c; has value type^op some xsd float^c

ProteinProspector^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002043

has super-classes: analysis software^c

ProteinProspector:expectation value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002045

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

ProteinProspector:score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002044

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

ProteinScape^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000734

has super-classes: Bruker software^c; analysis software^c

ProteinScape Gel^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001276

has super-classes: intermediate analysis format^c

ProteinScape input parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002100

has super-classes: search engine specific input parameter^c
has sub-classes: ProteinScape:second round Mascot^c, ProteinScape:second round Phenyx^c

ProteinScape SearchEvent^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001275

has super-classes: intermediate analysis format^c

Proteinscape spectra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001527

has super-classes: mass spectrometer file format^c

ProteinScape:IntensityCoverage^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001505

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

ProteinScape:PFFSolverExp^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001503

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

ProteinScape:PFFSolverScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001504

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

ProteinScape:ProfoundProbability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001497

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

ProteinScape:SearchEventId^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001496

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd positive integer^c

ProteinScape:SearchResultId^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001495

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd positive integer^c

ProteinScape:second round Mascot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001964

has super-classes: ProteinScape input parameter^c; has value type^op some xsd boolean^c

ProteinScape:second round Phenyx^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001965

has super-classes: ProteinScape input parameter^c; has value type^op some xsd boolean^c

ProteinScape:SequestMetaScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001506

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

Proteios^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000600

has super-classes: analysis software^c; data processing software^c

ProteoAnnotator:count alternative peptides^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002475

has super-classes: search engine specific score for protein groups^c; has value type^op some xsd int^c

ProteoAnnotator:non-canonical gene model score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002474

has super-classes: search engine specific score for protein groups^c; has_order^op some higher score better^c; has value type^op some xsd double^c

Proteoform^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001030

has super-classes: PEFF file sequence entry term^c; has value type^op some xsd string^c

proteoform-level global FDR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002907

has super-classes: proteoform-level identification statistic^c; has_domain^op some value between 0 and 1 inclusive^c; has value type^op some xsd double^c

proteoform-level global FDR threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002910

has super-classes: proteoform-level statistical threshold^c; has value type^op some xsd double^c

proteoform-level identification attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002904

has super-classes: single identification result attribute^c
has sub-classes: proteoform-level identification statistic^c

proteoform-level identification statistic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002905

has super-classes: proteoform-level identification attribute^c
has sub-classes: proteoform-level Q-value^c, proteoform-level global FDR^c, proteoform-level local FDR^c, search engine specific score for proteoforms^c

proteoform-level local FDR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002908

has super-classes: proteoform-level identification statistic^c; has_domain^op some value between 0 and 1 inclusive^c; has value type^op some xsd double^c
has sub-classes: TopMG:proteoform-level FDR^c, TopPIC:proteoform-level FDR^c

proteoform-level local FDR threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002911

has super-classes: proteoform-level statistical threshold^c; has value type^op some xsd double^c

proteoform-level Q-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003129

has super-classes: proteoform-level identification statistic^c; has_domain^op some value between 0 and 1 inclusive^c; has_order^op some lower score better^c; has value type^op some xsd double^c
has sub-classes: ProSight:proteoform Q-value^c

proteoform-level statistical threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002909

has super-classes: spectrum identification statistical threshold^c
has sub-classes: proteoform-level global FDR threshold^c, proteoform-level local FDR threshold^c

ProteoformDb^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000022

has super-classes: PEFF file header section term^c; has value type^op some xsd string^c

proteogenomics attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002636

has super-classes: peptide sequence-level identification attribute^c
has sub-classes: chromosome name^c, chromosome strand^c, genome reference version^c, peptide end on chromosome^c, peptide exon count^c, peptide exon nucleotide sizes^c, peptide start on chromosome^c, peptide start positions on chromosome^c, unmapped peptide^c, unmapped protein^c

proteogenomics search^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002635

has super-classes: special processing^c

ProteoGrouper:PAG score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002236

has super-classes: search engine specific score for protein groups^c; has value type^op some xsd double^c

ProteoGrouper:PDH score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002235

has super-classes: search engine specific score for proteins^c; has value type^op some xsd double^c

Proteome Discoverer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000650

has super-classes: Thermo Finnigan software^c; analysis software^c; data processing software^c

ProteomeCentral dataset URI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002847

has super-classes: Experiment additional parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer input parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002101

has super-classes: search engine specific input parameter^c
has sub-classes: ProteomeDiscoverer:1. Dynamic Modification^c, ProteomeDiscoverer:1. Static Modification^c, ProteomeDiscoverer:1. Static Terminal Modification^c, ProteomeDiscoverer:2. Dynamic Modification^c, ProteomeDiscoverer:2. Static Modification^c, ProteomeDiscoverer:3. Dynamic Modification^c, ProteomeDiscoverer:3. Static Modification^c, ProteomeDiscoverer:4. Dynamic Modification^c, ProteomeDiscoverer:5. Dynamic Modification^c, ProteomeDiscoverer:Absolute XCorr Threshold^c, ProteomeDiscoverer:Activation Type^c, ProteomeDiscoverer:Amanda:high confidence threshold^c, ProteomeDiscoverer:Amanda:middle confidence threshold^c, ProteomeDiscoverer:Default FDR calculator^c, ProteomeDiscoverer:Dynamic Modification^c, ProteomeDiscoverer:Enzyme Name^c, ProteomeDiscoverer:Fragment Mass Tolerance^c, ProteomeDiscoverer:Highest Charge State^c, ProteomeDiscoverer:Initial minimal peptide probability^c, ProteomeDiscoverer:Lowest Charge State^c, ProteomeDiscoverer:MS Order^c, ProteomeDiscoverer:Mascot:Decoy Search^c, ProteomeDiscoverer:Mascot:Error tolerant Search^c, ProteomeDiscoverer:Mascot:Mascot Server URL^c, ProteomeDiscoverer:Mascot:Max MGF File Size^c, ProteomeDiscoverer:Mascot:Number of attempts to submit the search^c, ProteomeDiscoverer:Mascot:Peptide CutOff Score^c, ProteomeDiscoverer:Mascot:Please Do not Touch this^c, ProteomeDiscoverer:Mascot:Protein CutOff Score^c, ProteomeDiscoverer:Mascot:Protein Relevance Factor^c, ProteomeDiscoverer:Mascot:Significance High^c, ProteomeDiscoverer:Mascot:Significance Middle^c, ProteomeDiscoverer:Mascot:Taxonomy^c, ProteomeDiscoverer:Mascot:Time interval between attempts to submit a search^c, ProteomeDiscoverer:Mascot:User Name^c, ProteomeDiscoverer:Mascot:Weight of A Ions^c, ProteomeDiscoverer:Mascot:Weight of B Ions^c, ProteomeDiscoverer:Mascot:Weight of C Ions^c, ProteomeDiscoverer:Mascot:Weight of D Ions^c, ProteomeDiscoverer:Mascot:Weight of V Ions^c, ProteomeDiscoverer:Mascot:Weight of W Ions^c, ProteomeDiscoverer:Mascot:Weight of X Ions^c, ProteomeDiscoverer:Mascot:Weight of Y Ions^c, ProteomeDiscoverer:Mascot:Weight of Z Ions^c, ProteomeDiscoverer:Mascot:X Static Modification^c, ProteomeDiscoverer:Mass Analyzer^c, ProteomeDiscoverer:Max Modifications Per Peptide^c, ProteomeDiscoverer:Max Precursor Mass^c, ProteomeDiscoverer:Maximum Delta Cn^c, ProteomeDiscoverer:Maximum Missed Cleavage Sites^c, ProteomeDiscoverer:Maximum Peptides Output^c, ProteomeDiscoverer:Maximum Protein References Per Peptide^c, ProteomeDiscoverer:Min Precursor Mass^c, ProteomeDiscoverer:Minimal peptide probability^c, ProteomeDiscoverer:Minimal peptide weight^c, ProteomeDiscoverer:Non-Fragment Filter:Mass Window Offset^c, ProteomeDiscoverer:Non-Fragment Filter:Maximum Neutral Loss Mass^c, ProteomeDiscoverer:Non-Fragment Filter:Remove Charge Reduced Precursor^c, ProteomeDiscoverer:Non-Fragment Filter:Remove Neutral Loss Peaks^c, ProteomeDiscoverer:Non-Fragment Filter:Remove Only Known Masses^c, ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Overtones^c, ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Peak^c, ProteomeDiscoverer:Number of Spectra Processed At Once^c, ProteomeDiscoverer:Number of input1 spectra^c, ProteomeDiscoverer:Number of input2 spectra^c, ProteomeDiscoverer:Number of input3 spectra^c, ProteomeDiscoverer:Number of input4 spectra^c, ProteomeDiscoverer:Number of input5 spectra^c, ProteomeDiscoverer:Number of predicted correct proteins^c, ProteomeDiscoverer:Organism^c, ProteomeDiscoverer:Peptide CTerminus^c, ProteomeDiscoverer:Peptide NTerminus^c, ProteomeDiscoverer:Peptide Without Protein Cut Off Score^c, ProteomeDiscoverer:Peptide Without Protein XCorr Threshold^c, ProteomeDiscoverer:Polarity Mode^c, ProteomeDiscoverer:Precursor Mass Tolerance^c, ProteomeDiscoverer:Protein Database^c, ProteomeDiscoverer:Protein Relevance Threshold^c, ProteomeDiscoverer:Reference Database^c, ProteomeDiscoverer:Relaxed Score Threshold^c, ProteomeDiscoverer:Reporter Ions Quantizer:Integration Method^c, ProteomeDiscoverer:Reporter Ions Quantizer:Integration Window Tolerance^c, ProteomeDiscoverer:Reporter Ions Quantizer:Quantitation Method^c, ProteomeDiscoverer:Residue substitution list^c, ProteomeDiscoverer:SEQUEST:CTerminal Modification^c, ProteomeDiscoverer:SEQUEST:Calculate Probability Score^c, ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge1^c, ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge2^c, ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge3^c, ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge4^c, ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge1^c, ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge2^c, ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge3^c, ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge4^c, ProteomeDiscoverer:SEQUEST:Fragment Ion Cutoff Percentage^c, ProteomeDiscoverer:SEQUEST:Low resolution spectra contained^c, ProteomeDiscoverer:SEQUEST:Max Identical Modifications Per Peptide^c, ProteomeDiscoverer:SEQUEST:Maximum Peptides Considered^c, ProteomeDiscoverer:SEQUEST:NTerminal Modification^c, ProteomeDiscoverer:SEQUEST:Peptide Relevance Factor^c, ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge1^c, ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge2^c, ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge3^c, ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge4^c, ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge1^c, ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge2^c, ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge3^c, ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge4^c, ProteomeDiscoverer:SEQUEST:Use Average Fragment Masses^c, ProteomeDiscoverer:SEQUEST:Weight of a Ions^c, ProteomeDiscoverer:SEQUEST:Weight of b Ions^c, ProteomeDiscoverer:SEQUEST:Weight of c Ions^c, ProteomeDiscoverer:SEQUEST:Weight of d Ions^c, ProteomeDiscoverer:SEQUEST:Weight of v Ions^c, ProteomeDiscoverer:SEQUEST:Weight of w Ions^c, ProteomeDiscoverer:SEQUEST:Weight of x Ions^c, ProteomeDiscoverer:SEQUEST:Weight of y Ions^c, ProteomeDiscoverer:SEQUEST:Weight of z Ions^c, ProteomeDiscoverer:SN Threshold^c, ProteomeDiscoverer:SRF File Selector:SRF File Path^c, ProteomeDiscoverer:Scan Type^c, ProteomeDiscoverer:Search Against Decoy Database^c, ProteomeDiscoverer:Search Modifications Only For Identified Proteins^c, ProteomeDiscoverer:Source Files^c, ProteomeDiscoverer:Source Files old^c, ProteomeDiscoverer:Source file extension^c, ProteomeDiscoverer:Spectrum Exporter:Export Format^c, ProteomeDiscoverer:Spectrum Exporter:File name^c, ProteomeDiscoverer:Spectrum Files:Raw File names^c, ProteomeDiscoverer:Spectrum Grouper:Allow MS Order Mismatch^c, ProteomeDiscoverer:Spectrum Grouper:Allow Mass Analyzer Mismatch^c, ProteomeDiscoverer:Spectrum Grouper:Max RT Difference^c, ProteomeDiscoverer:Spectrum Grouper:Precursor Mass Criterion^c, ProteomeDiscoverer:Spectrum Score Filter:Let Pass Above Scores^c, ProteomeDiscoverer:Spectrum Selector:Ionization Source^c, ProteomeDiscoverer:Spectrum Selector:Lower RT Limit^c, ProteomeDiscoverer:Spectrum Selector:Minimum Peak Count^c, ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range After^c, ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range Before^c, ProteomeDiscoverer:Spectrum Selector:Precursor Selection^c, ProteomeDiscoverer:Spectrum Selector:SN Threshold FTonly^c, ProteomeDiscoverer:Spectrum Selector:Total Intensity Threshold^c, ProteomeDiscoverer:Spectrum Selector:Unrecognized Activation Type Replacements^c, ProteomeDiscoverer:Spectrum Selector:Unrecognized Charge Replacements^c, ProteomeDiscoverer:Spectrum Selector:Unrecognized MS Order Replacements^c, ProteomeDiscoverer:Spectrum Selector:Unrecognized Mass Analyzer Replacements^c, ProteomeDiscoverer:Spectrum Selector:Unrecognized Polarity Replacements^c, ProteomeDiscoverer:Spectrum Selector:Upper RT Limit^c, ProteomeDiscoverer:Spectrum Selector:Use New Precursor Reevaluation^c, ProteomeDiscoverer:Static Modification^c, ProteomeDiscoverer:Static Modification for X^c, ProteomeDiscoverer:Strict Score Threshold^c, ProteomeDiscoverer:Target FDR Relaxed^c, ProteomeDiscoverer:Target FDR Strict^c, ProteomeDiscoverer:Use Average Precursor Mass^c, ProteomeDiscoverer:Use Neutral Loss a Ions^c, ProteomeDiscoverer:Use Neutral Loss b Ions^c, ProteomeDiscoverer:Use Neutral Loss y Ions^c, ProteomeDiscoverer:Use Neutral Loss z Ions^c, ProteomeDiscoverer:WinCyg reference database^c, ProteomeDiscoverer:WinCyg source files^c, ProteomeDiscoverer:Xtract:Highest Charge^c, ProteomeDiscoverer:Xtract:Highest MZ^c, ProteomeDiscoverer:Xtract:Lowest Charge^c, ProteomeDiscoverer:Xtract:Lowest MZ^c, ProteomeDiscoverer:Xtract:Monoisotopic Mass Only^c, ProteomeDiscoverer:Xtract:Overlapping Remainder^c, ProteomeDiscoverer:Xtract:Required Fitting Accuracy^c, ProteomeDiscoverer:Xtract:Resolution At 400^c, ProteomeDiscoverer:ZCore:Protein Score Cutoff^c, ProteomeDiscoverer:automatic workload^c, ProteomeDiscoverer:ion settings^c, ProteomeDiscoverer:max differential modifications^c, ProteomeDiscoverer:max equal modifications^c, ProteomeDiscoverer:max number neutral loss^c, ProteomeDiscoverer:max number neutral loss modifications^c, ProteomeDiscoverer:max number of same modifs^c, ProteomeDiscoverer:max peptide length^c, ProteomeDiscoverer:min peptide length^c, ProteomeDiscoverer:perform deisotoping^c, ProteomeDiscoverer:use flanking ions^c

ProteomeDiscoverer:1. Dynamic Modification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001720

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:1. Static Modification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002078

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Static Modification (MS:1001645) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:1. Static Terminal Modification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002522

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:2. Dynamic Modification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001721

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:2. Static Modification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002079

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Static Modification (MS:1001645) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:3. Dynamic Modification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001722

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:3. Static Modification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002330

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Static Modification (MS:1001645) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:4. Dynamic Modification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001723

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:5. Dynamic Modification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002331

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Absolute XCorr Threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001668

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Activation Type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001604

This term was made obsolete because it's recommended to use one of the 'ionization type' terms (MS:1000008) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Amanda:high confidence threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002316

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:Amanda:middle confidence threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002317

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:automatic workload^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002318

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Default FDR calculator^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002232

has super-classes: ProteomeDiscoverer input parameter^c; has regexp^op some regular expressions for a GUID^c

ProteomeDiscoverer:Delta Score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002834

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd float^c

ProteomeDiscoverer:Dynamic Modification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001644

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Enzyme Name^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001654

This term was made obsolete because it's recommended to use cleavage agent name (MS:1001045) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Fragment Mass Tolerance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001655

This term was made obsolete because it's recommended to use search tolerance minus value (MS:1001413) or search tolerance plus value (MS:1001412) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Highest Charge State^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001642

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:Initial minimal peptide probability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001725

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:ion settings^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002329

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Lowest Charge State^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001641

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:Mascot:Decoy Search^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001646

This term was made obsolete because it's recommended to use quality estimation with decoy database (MS:1001194) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Mascot:Error tolerant Search^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001647

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Mascot:Mascot Server URL^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001649

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Mascot:Max MGF File Size^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001648

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:Mascot:Number of attempts to submit the search^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001650

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:Mascot:Peptide CutOff Score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001658

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Mascot:Please Do not Touch this^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001754

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Mascot:Protein CutOff Score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001660

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Mascot:Protein Relevance Factor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001662

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Mascot:Significance High^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002230

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Mascot:Significance Middle^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002229

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Mascot:Taxonomy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001665

This term was made obsolete because it's recommended to use taxonomy: scientific name (MS:1001469) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Mascot:Time interval between attempts to submit a search^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001653

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Mascot:User Name^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001652

This term was made obsolete because it's recommended to use researcher (MS:1001271) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Mascot:Weight of A Ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001743

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Mascot:Weight of B Ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001744

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Mascot:Weight of C Ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001745

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Mascot:Weight of D Ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001746

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Mascot:Weight of V Ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001747

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Mascot:Weight of W Ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001748

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Mascot:Weight of X Ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001749

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Mascot:Weight of Y Ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001750

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Mascot:Weight of Z Ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001751

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Mascot:X Static Modification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001651

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Mass Analyzer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001606

This term was made obsolete because it's recommended to use mass analyzer type (MS:1000443) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:max differential modifications^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002320

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:max equal modifications^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002321

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:Max Modifications Per Peptide^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001673

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:max number neutral loss^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002324

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:max number neutral loss modifications^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002325

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:max number of same modifs^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002327

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:max peptide length^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002323

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:Max Precursor Mass^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001607

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Maximum Delta Cn^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002091

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Maximum Missed Cleavage Sites^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001657

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:Maximum Peptides Output^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001675

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:Maximum Protein References Per Peptide^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001676

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:min peptide length^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002322

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:Min Precursor Mass^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001608

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Minimal peptide probability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001726

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Minimal peptide weight^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001727

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:MS Order^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001610

This term was made obsolete because it's recommended to use MS1 spectrum (MS:1000579) or MSn spectrum (MS:1000580) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Non-Fragment Filter:Mass Window Offset^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001622

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Non-Fragment Filter:Maximum Neutral Loss Mass^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001623

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Non-Fragment Filter:Remove Charge Reduced Precursor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001624

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Non-Fragment Filter:Remove Neutral Loss Peaks^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001625

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Non-Fragment Filter:Remove Only Known Masses^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001626

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Overtones^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001627

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Peak^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001628

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Number of input1 spectra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001728

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:Number of input2 spectra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001729

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:Number of input3 spectra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001730

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:Number of input4 spectra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001731

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:Number of input5 spectra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001732

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:Number of predicted correct proteins^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001733

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Number of Spectra Processed At Once^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002569

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:Organism^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001734

This term was made obsolete because it's recommended to use taxonomy: scientific name (MS:1001469) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Peptide CTerminus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001678

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Peptide NTerminus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001679

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Peptide Without Protein Cut Off Score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002379

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Peptide Without Protein XCorr Threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002089

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:perform deisotoping^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002328

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Polarity Mode^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001611

This term was made obsolete because it's recommended to use scan polarity (MS:1000465) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Precursor Mass Tolerance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001659

This term was made obsolete because it's recommended to use search tolerance minus value (MS:1001413) or search tolerance plus value (MS:1001412) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Protein Database^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001661

This term was made obsolete because it's recommended to use database name (MS:1001013) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Protein Relevance Threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001681

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Reference Database^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001735

This term was made obsolete. Use attribute in mzIdentML / mzQuantML instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Relaxed Score Threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002377

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Reporter Ions Quantizer:Integration Method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001698

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Reporter Ions Quantizer:Integration Window Tolerance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001699

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Reporter Ions Quantizer:Quantitation Method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001700

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Residue substitution list^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001736

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Scan Type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001614

This term was made obsolete because it's recommended to use MS1 spectrum (MS:1000579), MSn spectrum (MS:1000580), CRM spectrum (MS:1000581), SIM spectrum (MS:1000582) or SRM spectrum (MS:1000583) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Search Against Decoy Database^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001682

This term was made obsolete because it's recommended to use quality estimation with decoy database (MS:1001194) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Search Modifications Only For Identified Proteins^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001703

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:SEQUEST:Calculate Probability Score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001669

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:SEQUEST:CTerminal Modification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001670

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:SEQUEST:Fragment Ion Cutoff Percentage^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001671

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge1^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001712

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge2^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001713

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge3^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001714

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge4^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001715

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge1^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001716

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge2^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001717

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge3^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001718

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge4^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001719

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:Low resolution spectra contained^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002233

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:SEQUEST:Max Identical Modifications Per Peptide^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001672

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:SEQUEST:Maximum Peptides Considered^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001674

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:SEQUEST:NTerminal Modification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001677

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:SEQUEST:Peptide Relevance Factor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001680

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge1^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001704

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge2^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001705

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge3^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001706

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge4^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001707

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge1^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001708

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge2^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001709

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge3^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001710

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge4^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001711

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:Use Average Fragment Masses^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001683

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:SEQUEST:Weight of a Ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001688

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:Weight of b Ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001689

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:Weight of c Ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001690

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:Weight of d Ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001691

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:Weight of v Ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001692

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:Weight of w Ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001693

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:Weight of x Ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001694

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:Weight of y Ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001695

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SEQUEST:Weight of z Ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001696

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:SN Threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001613

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Source file extension^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001737

This term was made obsolete because it's recommended to use mass spectrometer file format (MS:1000560) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Source Files^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001738

This term was made obsolete because it's recommended to use pepXML file (MS:1001421) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Source Files old^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001739

This term was made obsolete because it's recommended to use pepXML file (MS:1001421) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Spectrum Exporter:Export Format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001701

This term was made obsolete because it's recommended to use one of the 'mass spectrometer file format' terms (MS:1000560) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Spectrum Exporter:File name^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001702

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Spectrum Files:Raw File names^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001601

This term was made obsolete because it's recommended to use one of the 'mass spectrometer file format' terms (MS:1000560) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Spectrum Grouper:Allow Mass Analyzer Mismatch^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001629

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Spectrum Grouper:Allow MS Order Mismatch^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001630

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Spectrum Grouper:Max RT Difference^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001631

This term was made obsolete because it's recommended to use retention time window width (MS:1001907) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Spectrum Grouper:Precursor Mass Criterion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001632

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Spectrum Score Filter:Let Pass Above Scores^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001643

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Spectrum Selector:Ionization Source^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001603

This term was made obsolete because it's recommended to use one of the 'inlet type' (MS:1000007) or 'ionization type' (MS:1000008) terms instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Spectrum Selector:Lower RT Limit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001605

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Spectrum Selector:Minimum Peak Count^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001609

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range After^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002081

has super-classes: ProteomeDiscoverer input parameter^c; has_units^op some u o 0000221^c; has value type^op some xsd double^c

ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range Before^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002080

has super-classes: ProteomeDiscoverer input parameter^c; has_units^op some u o 0000221^c; has value type^op some xsd double^c

ProteomeDiscoverer:Spectrum Selector:Precursor Selection^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001612

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Spectrum Selector:SN Threshold FTonly^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001753

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Spectrum Selector:Total Intensity Threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001615

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Spectrum Selector:Unrecognized Activation Type Replacements^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001616

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Spectrum Selector:Unrecognized Charge Replacements^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001617

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:Spectrum Selector:Unrecognized Mass Analyzer Replacements^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001618

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Spectrum Selector:Unrecognized MS Order Replacements^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001619

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Spectrum Selector:Unrecognized Polarity Replacements^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001620

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Spectrum Selector:Upper RT Limit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001621

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Spectrum Selector:Use New Precursor Reevaluation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001752

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:SRF File Selector:SRF File Path^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001602

This term was made obsolete. Use attribute in mzIdentML / mzQuantML instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Static Modification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001645

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Static Modification for X^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001724

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Strict Score Threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002378

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Target FDR Relaxed^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001663

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Target FDR Strict^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001664

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Use Average Precursor Mass^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001666

This term was made obsolete because it's recommended to use parent mass type average (MS:1001212) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:use flanking ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002326

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Use Neutral Loss a Ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001684

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Use Neutral Loss b Ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001685

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Use Neutral Loss y Ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001686

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Use Neutral Loss z Ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001687

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:WinCyg reference database^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001740

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:WinCyg source files^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001741

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd string^c

ProteomeDiscoverer:Xtract:Highest Charge^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001633

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:Xtract:Highest MZ^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001634

This term was made obsolete because it's recommended to use scan window upper limit (MS:1000500) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Xtract:Lowest Charge^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001635

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd int^c

ProteomeDiscoverer:Xtract:Lowest MZ^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001636

This term was made obsolete because it's recommended to use scan window lower limit (MS:1000501) instead.

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Xtract:Monoisotopic Mass Only^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001637

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd boolean^c

ProteomeDiscoverer:Xtract:Overlapping Remainder^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001638

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Xtract:Required Fitting Accuracy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001639

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:Xtract:Resolution At 400^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001640

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeDiscoverer:ZCore:Protein Score Cutoff^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001697

has super-classes: ProteomeDiscoverer input parameter^c; has value type^op some xsd float^c

ProteomeXchange accession number^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001919

has super-classes: external reference identifier^c; has value type^op some xsd string^c

ProteomeXchange accession number version number^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001921

has super-classes: external reference identifier^c; has value type^op some xsd non negative integer^c

ProteomeXchange dataset identifier reanalysis number^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002997

has super-classes: external reference identifier^c; has value type^op some xsd non negative integer^c

ProteomeXchange project tag^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002340

has super-classes: external reference identifier^c; has value type^op some xsd string^c

proteomics solution 1^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000186

has super-classes: SCIEX instrument model^c

Proteomics Standards Initiative Mass Spectrometry Vocabularies^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_0000000

ProteoSuite^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002124

has super-classes: quantitation software name^c

ProteoWizard chainsaw^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002207

has super-classes: ProteoWizard software^c

ProteoWizard idconvert^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002206

has super-classes: ProteoWizard software^c

ProteoWizard msaccess^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002208

has super-classes: ProteoWizard software^c

ProteoWizard msconvert^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002205

has super-classes: ProteoWizard software^c

ProteoWizard SeeMS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002209

has super-classes: ProteoWizard software^c

ProteoWizard software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000615

has super-classes: analysis software^c; data processing software^c
has sub-classes: ProteoWizard SeeMS^c, ProteoWizard chainsaw^c, ProteoWizard idconvert^c, ProteoWizard msaccess^c, ProteoWizard msconvert^c

proton affinity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000233

This child of the former purgatory term ion attribute was made obsolete.

has super-classes: has value type^op some xsd float^c

proton transfer charge reduction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003249

has super-classes: ionization type^c

proton transfer reaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003248

has super-classes: ionization type^c

protonated molecule^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000375

This child of the former purgatory term ion chemical type was made obsolete.

protXML format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001422

has super-classes: intermediate analysis format^c

PSI mzData format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000564

has super-classes: mass spectrometer file format^c

PSI-MS CV Quality Control Vocabulary^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000000

has super-classes: part_of^op some Proteomics Standards Initiative Mass Spectrometry Vocabularies^c

PSM is used for peptide-level scoring^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002503

has super-classes: peptide sequence-level identification attribute^c

PSM-level attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002345

has super-classes: single identification result attribute^c
has sub-classes: PSM-level identification statistic^c, ion mobility attribute^c, number of unmatched peaks^c, scan start time^c

PSM-level combined FDRScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002356

has super-classes: PSM-level search engine specific statistic^c; search engine specific score for proteins^c; has_domain^op some value greater than zero but less than or equal to one^c; has value type^op some xsd double^c

PSM-level e-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002353

has super-classes: PSM-level identification statistic^c; has_domain^op some value greater than zero^c; has value type^op some xsd double^c
has sub-classes: MS-GF:EValue^c, MS-GF:SpecEValue^c, MSPathFinder:EValue^c, MSPathFinder:SpecEValue^c, ProSight:spectral E-value^c, TopMG:spectral E-value^c, TopPIC:spectral E-value^c

PSM-level FDRScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002355

has super-classes: PSM-level search engine specific statistic^c; search engine specific score for proteins^c; has_domain^op some value greater than zero but less than or equal to one^c; has value type^op some xsd double^c

PSM-level global confidence^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002465

has super-classes: PSM-level result list statistic^c

PSM-level global FDR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002350

has super-classes: PSM-level result list statistic^c; has_domain^op some value between 0 and 1 inclusive^c; has value type^op some xsd double^c

PSM-level global FNR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002464

has super-classes: PSM-level result list statistic^c; has_domain^op some value between 0 and 1 inclusive^c

PSM-level identification statistic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002347

has super-classes: PSM-level attribute^c
has sub-classes: PSM-level e-value^c, PSM-level local FDR^c, PSM-level p-value^c, PSM-level probability^c, PSM-level q-value^c, PSM-level search engine specific statistic^c, PeptideShaker PSM confidence type^c

PSM-level local FDR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002351

has super-classes: PSM-level identification statistic^c; has_domain^op some value between 0 and 1 inclusive^c; has value type^op some xsd double^c
has sub-classes: TopMG:spectral FDR^c, TopPIC:spectral FDR^c

PSM-level p-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002352

has super-classes: PSM-level identification statistic^c; has_domain^op some value between 0 and 1 inclusive^c; has value type^op some xsd double^c
has sub-classes: TopMG:spectral p-value^c, TopPIC:spectral p-value^c

PSM-level probability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002357

has super-classes: PSM-level identification statistic^c; has_domain^op some value between 0 and 1 inclusive^c; has value type^op some xsd double^c

PSM-level q-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002354

has super-classes: PSM-level identification statistic^c; has_domain^op some value between 0 and 1 inclusive^c; has value type^op some xsd double^c
has sub-classes: MS-GF:QValue^c, MSPathFinder:QValue^c, ProSight:spectral Q-value^c

PSM-level quantification datatype^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002736

has super-classes: quantification datatype^c

PSM-level result list attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002700

has super-classes: result list attribute^c
has sub-classes: PSM-level result list statistic^c, count of identified spectra^c

PSM-level result list statistic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002701

has super-classes: PSM-level result list attribute^c
has sub-classes: PSM-level global FDR^c, PSM-level global FNR^c, PSM-level global confidence^c, no PSM threshold^c

PSM-level search engine specific statistic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001143

has super-classes: PSM-level identification statistic^c
has sub-classes: Amanda:AmandaScore^c, Andromeda:PEP^c, Andromeda:score^c, Byonic: Peptide AbsLogProb^c, Byonic: Peptide AbsLogProb2D^c, Byonic:Delta Score^c, Byonic:DeltaMod Score^c, Byonic:PEP^c, Byonic:Peptide LogProb^c, Byonic:Score^c, Comet:deltacn^c, Comet:deltacnstar^c, Comet:matched ions^c, Comet:sprank^c, Comet:spscore^c, Comet:total ions^c, Comet:xcorr^c, DeBunker:score^c, FDRScore^c, IdentityE Score^c, KSDP score^c, MS-GF:EValue^c, MS-GF:Energy^c, MS-GF:PEP^c, MS-GF:PepQValue^c, MS-GF:QValue^c, MS-GF:RawScore^c, MS-GF:SpecEValue^c, MSFit:Mowse score^c, MSPathFinder:EValue^c, MSPathFinder:PepQValue^c, MSPathFinder:QValue^c, MSPathFinder:RawScore^c, MSPathFinder:SpecEValue^c, MSPepSearch:score^c, Mascot:expectation value^c, Mascot:homology threshold^c, Mascot:identity threshold^c, Mascot:matched ions^c, Mascot:score^c, Mascot:total ions^c, MaxQuant-DIA PEP^c, MaxQuant-DIA score^c, MetaMorpheus:score^c, Morpheus:Morpheus score^c, MyriMatch:MVH^c, MyriMatch:mzFidelity^c, OMSSA:evalue^c, OMSSA:pvalue^c, OpenMS:ConsensusID PEP^c, OpenMS:Target-decoy PSM q-value^c, OpenPepXL:score^c, OpenXQuest:combined score^c, OpenXQuest:intsum^c, OpenXQuest:match-odds^c, OpenXQuest:wTIC^c, OpenXQuest:xcorr common^c, OpenXQuest:xcorr xlink^c, PEAKS:inChorusPeptideScore^c, PEAKS:peptideScore^c, PSM-level FDRScore^c, PSM-level combined FDRScore^c, PeptideShaker PSM confidence^c, PeptideShaker PSM score^c, Phenyx:Auto^c, Phenyx:Modif^c, Phenyx:NumberOfMC^c, Phenyx:PepPvalue^c, Phenyx:Pepzscore^c, Phenyx:User^c, ProLuCID:deltacn^c, ProLuCID:xcorr^c, ProSight:spectral C-score^c, ProSight:spectral E-value^c, ProSight:spectral P-score^c, ProSight:spectral Q-value^c, Profound:Cluster^c, Profound:ClusterRank^c, Profound:z value^c, ProteinLynx:Ladder Score^c, ProteinLynx:Log Likelihood^c, ProteinProspector:expectation value^c, ProteinProspector:score^c, ProteinScape:IntensityCoverage^c, ProteinScape:PFFSolverExp^c, ProteinScape:PFFSolverScore^c, ProteinScape:ProfoundProbability^c, ProteinScape:SearchEventId^c, ProteinScape:SearchResultId^c, ProteinScape:SequestMetaScore^c, ProteomeDiscoverer:Delta Score^c, SEQUEST:PeptideIdnumber^c, SEQUEST:PeptideNumber^c, SEQUEST:PeptideRankSp^c, SEQUEST:PeptideSp^c, SEQUEST:deltacn^c, SEQUEST:deltacnstar^c, SEQUEST:matched ions^c, SEQUEST:probability^c, SEQUEST:sf^c, SEQUEST:sprank^c, SEQUEST:spscore^c, SEQUEST:total ions^c, SEQUEST:xcorr^c, SIM-XL score^c, SQID:deltaScore^c, SQID:score^c, Scaffold:Peptide Probability^c, Sonar:Score^c, SpectraST:delta^c, SpectraST:discriminant score F^c, SpectraST:dot^c, SpectraST:dot_bias^c, SpectrumMill:Discriminant Score^c, SpectrumMill:SPI^c, SpectrumMill:Score^c, TopMG:spectral E-value^c, TopMG:spectral FDR^c, TopMG:spectral p-value^c, TopPIC:spectral E-value^c, TopPIC:spectral FDR^c, TopPIC:spectral p-value^c, X!Tandem:expect^c, X!Tandem:hyperscore^c, ZCore:probScore^c, combined FDRScore^c, percolator:PEP^c, percolator:Q value^c, percolator:score^c, xi:score^c

PSM-level statistical threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002483

has super-classes: spectrum identification statistical threshold^c
has sub-classes: PSM:FDR threshold^c

PSM:FDR threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002260

has super-classes: PSM-level statistical threshold^c; has value type^op some xsd double^c

PTM localization attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002688

has super-classes: analysis attribute^c
has sub-classes: PTM localization result list statistic^c, PTM localization single result statistic^c

PTM localization confidence metric^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002538

has super-classes: spectrum identification result details^c; has value type^op some xsd string^c
has sub-classes: PeptideShaker PTM confidence type^c

PTM localization distinct peptide-level statistic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002549

has super-classes: PTM localization single result statistic^c
has sub-classes: peptide:Ascore^c, peptide:D-Score^c, peptide:H-Score^c, peptide:MD-Score^c, peptide:phosphoRS score^c

PTM localization PSM-level statistic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001968

has super-classes: PTM localization single result statistic^c
has sub-classes: Ascore^c, D-Score^c, DeBunker:score^c, H-Score^c, MD-Score^c, MSQuant:PTM-score^c, Mascot:PTM site assignment confidence^c, MaxQuant:P-site localization probability^c, MaxQuant:PTM Delta Score^c, MaxQuant:PTM Score^c, MaxQuant:Phospho (STY) Probabilities^c, MaxQuant:Phospho (STY) Score Diffs^c, PTMProphet information content^c, PTMProphet mean best probability^c, PTMProphet normalized information content^c, PTMProphet probability^c, TopPIC:MIScore^c, phosphoRS score^c, phosphoRS sequence probability^c, phosphoRS site probability^c

PTM localization result list statistic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002690

has super-classes: PTM localization attribute^c
has sub-classes: global FLR^c, local FLR at threshold^c

PTM localization score threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002555

has super-classes: spectrum identification result details^c
has sub-classes: Ascore threshold^c, D-Score threshold^c, DeBunker:score threshold^c, H-Score threshold^c, MD-Score threshold^c, MSQuant:PTM-score threshold^c, Mascot:PTM site assignment confidence threshold^c, MaxQuant:P-site localization probability threshold^c, MaxQuant:PTM Delta Score threshold^c, MaxQuant:PTM Score threshold^c, MaxQuant:Phospho (STY) Probabilities threshold^c, TopPIC:MIScore threshold^c, no modification threshold^c, phosphoRS score threshold^c, phosphoRS site probability threshold^c

PTM localization single result statistic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002689

has super-classes: PTM localization attribute^c
has sub-classes: PTM localization PSM-level statistic^c, PTM localization distinct peptide-level statistic^c

PTM scoring algorithm version^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001972

has super-classes: peptide modification details^c; has value type^op some xsd string^c

PTMProphet^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002292

has super-classes: Trans-Proteomic Pipeline software^c

PTMProphet information content^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003150

has super-classes: PTM localization PSM-level statistic^c; has regexp^op some regular expression for modification localization scoring^c

PTMProphet mean best probability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003148

has super-classes: PTM localization PSM-level statistic^c; has regexp^op some regular expression for modification localization scoring^c

PTMProphet normalized information content^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003149

has super-classes: PTM localization PSM-level statistic^c; has regexp^op some regular expression for modification localization scoring^c

PTMProphet probability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003147

has super-classes: PTM localization PSM-level statistic^c; has regexp^op some regular expression for modification localization scoring^c

PTX-QC^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003162

has super-classes: analysis software^c

PubMed identifier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000879

has super-classes: external reference identifier^c; has value type^op some xsd integer^c

pulse counting^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000118

has super-classes: detector acquisition mode^c

pulse duration^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000847

has super-classes: laser attribute^c; has_units^op some u o 0000150^c; has value type^op some xsd float^c

pulse energy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000846

has super-classes: laser attribute^c; has_units^op some u o 0000112^c; has value type^op some xsd float^c

pulsed q dissociation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000599

has super-classes: dissociation method^c

PureDisk^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000735

has super-classes: Bruker software^c

purgatory^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000479

The whole branch purgatory term was made obsolete.

pymzML^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001914

has super-classes: data processing software^c

pyrolysis mass spectrometry^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000274

has super-classes: ionization type^c

pyteomics^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003146

has super-classes: analysis software^c

python-psims^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002991

has super-classes: conversion software^c

Q Exactive^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001911

has super-classes: Thermo Scientific instrument model^c

Q Exactive HF^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002523

has super-classes: Thermo Scientific instrument model^c

Q Exactive HF-X^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002877

has super-classes: Thermo Scientific instrument model^c

Q Exactive Plus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002634

has super-classes: Thermo Scientific instrument model^c

Q Exactive UHMR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003245

has super-classes: Thermo Scientific instrument model^c

Q TRAP^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000187

has super-classes: SCIEX instrument model^c

Q-Tof micro^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000188

has super-classes: Waters instrument model^c

Q-Tof Premier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000632

has super-classes: Waters instrument model^c

Q-Tof Ultima^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000189

has super-classes: Waters instrument model^c

QC metric^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000001

has super-classes: part_of^op some PSI-MS CV Quality Control Vocabulary^c
has sub-classes: MS metric^c, chromatogram metric^c, environment metric^c, retention time metric^c, sample preparation metric^c

QC metric category^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000007

has super-classes: part_of^op some PSI-MS CV Quality Control Vocabulary^c
has sub-classes: ID based metric^c, ID free metric^c, QC sample metric^c, multiple runs based metric^c, multiple spectra based metric^c, quantification based metric^c, single run based metric^c, single spectrum based metric^c

QC metric value type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000002

has super-classes: part_of^op some PSI-MS CV Quality Control Vocabulary^c
has sub-classes: matrix^c, n-tuple^c, single value^c, table^c

QC sample metric^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000073

has super-classes: QC metric category^c
has sub-classes: high complexity QC sample metric^c, low complexity QC sample metric^c

QC1 sample metric^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000077

Expected peptides from QC1 sample measurement are: 'LVNELTEFAK','HLVDEPQNLIK','VPQVSTPTLVEVSR','EAC(Carbamidomethyl)FAVEGPK','EYEATLEEC(Carbamidomethyl)C(Carbamidomethyl)AK','EC(Carbamidomethyl)C(Carbamidomethyl)HGDLLEC(Carbamidomethyl)ADDR','SLHTLFGDELC(Carbamidomethyl)K','TC(Carbamidomethyl)VADESHAGC(Carbamidomethyl)EK','YIC(Carbamidomethyl)DNQDTISSK','NEC(Carbamidomethyl)FLSHK'

has super-classes: low complexity QC sample metric^c

QC2 sample intensities^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000079

has super-classes: table^c; has_column^op some proforma peptidoform sequence^c; has_metric_category^op some ID based metric^c; has_metric_category^op some QC2 sample metric^c; has_optional_column^op some MS1 feature maximum intensity^c; has_optional_column^op some MS1 feature area^c; has_optional_column^op some XIC area^c; has_optional_column^op some normalized XIC area^c; has_optional_column^op some previous MSn-1 scan precursor intensity^c

QC2 sample mass accuracies^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000078

has super-classes: table^c; has_column^op some proforma peptidoform sequence^c; has_column^op some observed mass accuracy^c; has_metric_category^op some ID based metric^c; has_metric_category^op some QC2 sample metric^c

QC2 sample metric^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000076

Expected peptides from QC2 sample measurement are: 'YAEAVTR','STLTDSLVC(Carbamidomethyl)K','SLADELALVDVLEDK','NPDDITNEEYGEFYK','LAVDEEENADNNTK','FEELNMDLFR','EAALSTALSEK','DDVAQTDLLQIDPNFGSK','RFPGYDSESK','EATTEFSVDAR','EQFLDGDGWTSR','TPAQFDADELR','LGDLYEEEMR','EVSTYIK','FAFQAEVNR'

has super-classes: high complexity QC sample metric^c

QSTAR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000190

has super-classes: SCIEX instrument model^c

QSTAR Elite^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000655

has super-classes: SCIEX instrument model^c

QSTAR Pulsar^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000656

has super-classes: SCIEX instrument model^c

QSTAR XL^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000657

has super-classes: SCIEX instrument model^c

QTRAP 4500^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002580

has super-classes: SCIEX instrument model^c

QTRAP 5500^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000931

has super-classes: SCIEX instrument model^c

QTRAP 6500^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002581

has super-classes: SCIEX instrument model^c

QTRAP 6500+^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002582

has super-classes: SCIEX instrument model^c

quadratic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000096

has super-classes: scan law^c

quadrupole^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000081

has super-classes: mass analyzer type^c

quadrupole ion trap^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000082

has super-classes: ion trap^c

Qualifier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C41009

has super-classes: Property or Attribute^c
has sub-classes: Temporal Qualifier^c

quality control data format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003161

has super-classes: file format^c
has sub-classes: mzQC format^c

quality estimation by manual validation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001058

has super-classes: quality estimation method details^c

quality estimation method details^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001060

has super-classes: search input details^c
has sub-classes: quality estimation by manual validation^c, quality estimation with decoy database^c, quality estimation with implicite decoy sequences^c, report only spectra assigned to identified proteins^c, statistical threshold^c

quality estimation with decoy database^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001194

has super-classes: quality estimation method details^c; has value type^op some xsd boolean^c

quality estimation with implicite decoy sequences^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001454

has super-classes: quality estimation method details^c

QuaMeter IDFree^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003164

has super-classes: analysis software^c

QuantAnalysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000736

has super-classes: Bruker software^c; analysis software^c; data processing software^c

quantification based metric^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000010

has super-classes: QC metric category^c

quantification data processing^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001861

has super-classes: part_of^op some spectrum interpretation^c
has sub-classes: ANOVA-test^c, Progenesis automatic alignment^c, Progenesis manual alignment^c, Progenesis normalization^c, Variance stabilizing normalization^c, normalization to mean of sum of all proteins^c, quantile normalization, peptides^c, quantile normalization, proteins^c, t-test^c

quantification datatype^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001805

has super-classes: quantification information^c
has sub-classes: MaxQuant:LFQ intensity^c, MaxQuant:MS/MS count^c, MaxQuant:PEP^c, OpenMS:LFQ intensity^c, OpenMS:LFQ spectral count^c, PSM-level quantification datatype^c, Progenesis:confidence score^c, XIC area^c, absolute quantity^c, distributed normalized spectral abundance factor^c, error on absolute quantity^c, feature-level quantification datatype^c, intensity of precursor ion^c, internal reference abundance^c, isotopic pattern area^c, max fold change^c, molecules per cell^c, normalized XIC area^c, normalized spectral abundance factor^c, p-value^c, peak area^c, peptide-level quantification datatype^c, product background^c, protein group-level quantification datatype^c, protein-level quantification datatype^c, ratio calculation method^c, reporter ion intensity^c, reporter ion normalized value^c, reporter ion raw value^c, small molecule quantification datatype^c

quantification file format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002074

has super-classes: file format^c
has sub-classes: mzQuantML format^c

quantification information^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001129

has super-classes: part_of^op some spectrum interpretation^c
has sub-classes: quantification datatype^c, quantification object attribute^c, quantitation analysis summary^c, quantitation software comment or customizations^c, quantitation software name^c, quantitation software version^c

quantification object attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001806

has super-classes: quantification information^c
has sub-classes: assay attribute^c, assay label attribute^c, denominator data type attribute^c, experiment name^c, feature attribute^c, feature list attribute^c, identification file attribute^c, numerator data type attribute^c, peptide consensus attribute^c, peptide consensus list attribute^c, protein attribute^c, protein group attribute^c, protein group list attribute^c, protein list attribute^c, raw file attribute^c, raw files group attribute^c, small molecule attribute^c, small molecule list attribute^c, small molecule modification attribute^c, study variable attribute^c

quantile normalization, peptides^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001864

has super-classes: quantification data processing^c

quantile normalization, proteins^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001863

has super-classes: quantification data processing^c

quantitation analysis summary^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001833

has super-classes: quantification information^c
has sub-classes: LC-MS label-free quantitation analysis^c, MS1 label-based analysis^c, MS2 tag-based analysis^c, SILAC quantitation analysis^c, SRM quantitation analysis^c, absolute quantitation analysis^c, isobaric label quantitation analysis^c, metabolic labeling 14N / 15N quantitation analysis^c, spectral counting quantitation analysis^c

quantitation software comment or customizations^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001832

has super-classes: quantification information^c; has value type^op some xsd string^c
has sub-classes: internal peptide reference used^c, internal protein reference used^c

quantitation software name^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001139

has super-classes: software^c; quantification information^c
has sub-classes: Anubis^c, DIA-NN^c, FindPairs^c, ITRAQAnalyzer^c, IsobariQ^c, Mascot Distiller^c, MaxQuant^c, Microsoft Excel^c, PEAKS Node^c, PEAKS Online^c, PEAKS Studio^c, PatternLab^c, Progenesis LC-MS^c, ProteoSuite^c, QUIN-XL^c, SILACAnalyzer^c, Skyline^c, Skyline mzQuantML converter^c, WARP-LC^c, x-Tracker^c

quantitation software version^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001140

This term was made obsolete because part of mzQuantML schema.

has super-classes: quantification information^c

quattro micro^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000191

has super-classes: Waters instrument model^c

Quattro micro GC^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001789

has super-classes: Waters instrument model^c

Quattro Ultima^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000192

has super-classes: Waters instrument model^c

quick and dirty MALDI sample preparation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001993

has super-classes: matrix application type^c

QUIN-XL^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003111

has super-classes: quantitation software name^c

quistor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000299

This former purgatory term was made obsolete.

radial ejection linear ion trap^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000083

has super-classes: linear ion trap^c

radical ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000376

This child of the former purgatory term ion chemical type was made obsolete.

rank transform^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003242

has super-classes: peak intensity transform^c

rapifleX^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003122

has super-classes: Bruker Daltonics flex series^c

ratio calculation method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002066

has super-classes: quantification datatype^c; has value type^op some xsd double^c
has sub-classes: simple ratio of two values^c

raw data file^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003083

has super-classes: source data file^c

raw file attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001817

has super-classes: quantification object attribute^c
has sub-classes: eight sample run^c, four sample run^c, one sample run^c, three sample run^c, two sample run^c

raw files group attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001823

has super-classes: quantification object attribute^c
has sub-classes: merge of runs of 1D gel bands^c

raw inverse reduced ion mobility array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003008

has super-classes: ion mobility array^c; has_units^op some volt-second per square centimeter^c; has value type^op some xsd float^c

raw ion mobility array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003007

has super-classes: ion mobility array^c; has_units^op some u o 0000010^c; has_units^op some u o 0000028^c; has value type^op some xsd float^c

raw ion mobility drift time array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003153

has super-classes: ion mobility array^c; has_units^op some u o 0000010^c; has_units^op some u o 0000028^c; has value type^op some xsd float^c

razor peptide^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003015

has super-classes: peptide^c

ReAdW^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000541

has super-classes: data processing software^c

Reference^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002866

has super-classes: Experiment additional parameter^c; has value type^op some xsd string^c

reference ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000377

This child of the former purgatory term ion chemical type was made obsolete.

reflectron^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000300

has super-classes: ion optics type^c

reflectron off^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000105

has super-classes: reflectron state^c

reflectron on^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000106

has super-classes: reflectron state^c

reflectron state^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000021

has super-classes: mass analyzer attribute^c
has sub-classes: reflectron off^c, reflectron on^c

regular expression^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002479

has super-classes: part_of^op some Proteomics Standards Initiative Mass Spectrometry Vocabularies^c
has sub-classes: Cleavage agent regular expression^c, Regular expression for adduct ion formula^c, regular expression for PEFF molecular sequence type^c, regular expression for PEFF sequence status^c, regular expression for a digital object identifier (DOI)^c, regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment^c, regular expression for interaction scores derived from cross-linking^c, regular expression for modification localization scoring^c, regular expressions for a GUID^c

regular expression for a digital object identifier (DOI)^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002480

has super-classes: regular expression^c

regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_1002001

has super-classes: regular expression^c

Regular expression for adduct ion formula^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002812

has super-classes: regular expression^c

regular expression for interaction scores derived from cross-linking^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002665

has super-classes: regular expression^c

regular expression for modification localization scoring^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002505

has super-classes: regular expression^c

regular expression for PEFF molecular sequence type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_1002002

has super-classes: regular expression^c

regular expression for PEFF sequence status^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_1002003

has super-classes: regular expression^c

regular expressions for a GUID^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002231

has super-classes: regular expression^c

related spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003258

has super-classes: library spectrum cross reference^c
has sub-classes: related spectrum USI^c, related spectrum keys^c

related spectrum description^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003261

has super-classes: has value type^op some xsd string^c; part_of^op some related spectrum^c

related spectrum keys^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003259

has super-classes: related spectrum^c; has value type^op some list of integers^c

related spectrum USI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003260

has super-classes: related spectrum^c; has value type^op some xsd string^c

release date^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001017

has super-classes: search database details^c; spectral library attribute^c; has structured representation in format^op some mzIdentML format^c; has value type^op some xsd date time^c

report only spectra assigned to identified proteins^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001574

has super-classes: quality estimation method details^c

reporter ion intensity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001847

has super-classes: quantification datatype^c; has value type^op some xsd double^c

reporter ion normalized value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001857

has super-classes: quantification datatype^c; has value type^op some xsd double^c

reporter ion raw value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001856

has super-classes: quantification datatype^c; has value type^op some xsd double^c

Reprocessed complete dataset^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002861

has super-classes: Experiment additional parameter^c; has value type^op some xsd string^c

Reprocessed subset dataset^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002862

has super-classes: Experiment additional parameter^c; has value type^op some xsd string^c

Resampler^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000764

has super-classes: TOPP software^c

researcher^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001271

has super-classes: role type^c

reservoir^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000067

has super-classes: inlet type^c

residual gas analyzer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000277

This child of the former purgatory term mass spectrometer was made obsolete.

residue-pair-level global FDR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002677

has super-classes: interaction score derived from cross-linking^c; has_domain^op some value between 0 and 1 inclusive^c; has regexp^op some regular expression for interaction scores derived from cross-linking^c; has value type^op some xsd double^c

resolution array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002529

has super-classes: binary data array^c

resolution measurement method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000012

has super-classes: measurement method^c
has sub-classes: baseline^c, full width at half-maximum^c, ten percent valley^c

resolution type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000013

This former purgatory term was made obsolete.

resonance enhanced multiphoton ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000276

has super-classes: ionization type^c

resonance ion ejection^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000318

This child of the former purgatory term m/z Separation Method was made obsolete.

Result file URI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002848

has super-classes: Associated file URI^c; has value type^op some xsd string^c

result list attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002699

has super-classes: identification attribute^c
has sub-classes: PSM-level result list attribute^c, peptide sequence-level result list attribute^c, protein group-level result list attribute^c, protein-level result list attribute^c

retention time^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000894

has super-classes: peptidoform attribute^c; has_units^op some u o 0000010^c; has_units^op some u o 0000031^c; has value type^op some xsd float^c
has sub-classes: local retention time^c, normalized retention time^c, predicted retention time^c

retention time acquisition range^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000070

has super-classes: n-tuple^c; has_metric_category^op some ID free metric^c; has_metric_category^op some single run based metric^c; has_metric_category^op some retention time metric^c; has_units^op some u o 0000010^c; has_value_concept^op some s t a t o 0000035^c

retention time alignment^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000745

has super-classes: data processing action^c

retention time metric^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000016

has super-classes: QC metric^c

retention time normalization standard^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000901

has super-classes: standard^c
has sub-classes: H-PINS retention time normalization standard^c, iRT retention time normalization standard^c

retention time window attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000915

has super-classes: part_of^op some retention time^c
has sub-classes: retention time window lower offset^c, retention time window upper offset^c, retention time window width^c

retention time window lower offset^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000916

has super-classes: retention time window attribute^c; has_units^op some u o 0000010^c; has_units^op some u o 0000031^c; has value type^op some xsd float^c

retention time window upper offset^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000917

has super-classes: retention time window attribute^c; has_units^op some u o 0000010^c; has_units^op some u o 0000031^c; has value type^op some xsd float^c

retention time window width^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001907

has super-classes: retention time window attribute^c; has_units^op some u o 0000010^c; has_units^op some u o 0000031^c; has value type^op some xsd float^c

retention time(s)^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001114

This term was made obsolete because scan start time (MS:1000016) should be used instead.

has super-classes: peptide sequence-level identification attribute^c; has_units^op some u o 0000010^c; has_units^op some u o 0000031^c; has value type^op some xsd double^c

ribonucleotide^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003037

has super-classes: small molecule^c

role type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001266

has super-classes: contact attribute^c
has sub-classes: instrument vendor^c, lab personnel^c, programmer^c, researcher^c, software vendor^c

run attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000857

has super-classes: object attribute^c
has sub-classes: alternating polarity mode^c, chromatography separation^c, fraction identifier^c, mass spectrometry imaging^c, modulation time^c, multidimensional chromatography modulation description^c

S-lens voltage^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001913

has super-classes: source attribute^c; has_units^op some u o 0000218^c; has value type^op some xsd float^c

sample^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000457

has super-classes: part_of^op some spectrum generation information^c

sample attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000548

has super-classes: object attribute^c; part_of^op some sample^c
has sub-classes: label free sample^c, sample batch^c, sample concentration^c, sample label^c, sample mass^c, sample name^c, sample number^c, sample state^c, sample volume^c

sample batch^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000053

has super-classes: sample attribute^c; has value type^op some xsd string^c

sample concentration^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000006

has super-classes: sample attribute^c; has_units^op some u o 0000175^c; has value type^op some xsd float^c

sample label^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002602

has super-classes: sample attribute^c; assay label attribute^c
has sub-classes: DiART reagent^c, DiLeu reagent^c, ICAT reagent^c, ICPL reagent^c, SILAC reagent^c, TMT reagent^c, iTRAQ reagent^c

sample mass^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000004

has super-classes: sample attribute^c; has value type^op some xsd float^c; has_units^op some u o 0000021^c

sample name^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000002

has super-classes: sample attribute^c; has value type^op some xsd string^c

sample number^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000001

has super-classes: sample attribute^c; has value type^op some xsd string^c

sample plate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001937

has super-classes: part_of^op some source^c

sample plate type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001938

has super-classes: part_of^op some sample plate^c
has sub-classes: coated glass plate^c, precoated MALDI sample plate^c, stainless steel plate^c

sample pre-fractionation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002493

has super-classes: special processing^c

sample preparation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000831

has super-classes: object attribute^c; part_of^op some sample attribute^c
has sub-classes: in-gel digestion^c, in-solution digestion^c

sample preparation metric^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000023

has super-classes: QC metric^c

sample state^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000003

has super-classes: sample attribute^c
has sub-classes: emulsion^c, gaseous sample state^c, liquid sample state^c, solid sample state^c, solution^c, suspension^c

sample volume^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000005

has super-classes: sample attribute^c; has_units^op some u o 0000098^c; has value type^op some xsd float^c

sampled noise baseline array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002745

has super-classes: binary data array^c

sampled noise intensity array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002744

has super-classes: binary data array^c; has_units^op some number of detector counts^c

sampled noise m/z array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002743

has super-classes: binary data array^c; has_units^op some m/z^c

sampling frequency^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000029

has super-classes: detector attribute^c; has_units^op some u o 0000106^c; has value type^op some xsd float^c

sandwich MALDI sample preparation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001991

has super-classes: matrix application type^c

Savitzky-Golay smoothing^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000782

has super-classes: smoothing^c

Scaffold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001561

has super-classes: analysis software^c

Scaffold input parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002106

has super-classes: software specific input parameter^c
has sub-classes: Scaffold: Minimum Peptide Count^c, Scaffold: Minimum Peptide Probability^c, Scaffold: Minimum Protein Probability^c

Scaffold nativeID format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001562

has super-classes: native spectrum identifier format^c

Scaffold: Minimum Peptide Count^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001575

has super-classes: Scaffold input parameter^c; has value type^op some xsd positive integer^c

Scaffold: Minimum Peptide Probability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001577

has super-classes: Scaffold input parameter^c; has value type^op some xsd double^c

Scaffold: Minimum Protein Probability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001576

has super-classes: Scaffold input parameter^c; has value type^op some xsd double^c

Scaffold:Peptide Probability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001568

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

Scaffold:Protein Probability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001579

has super-classes: search engine specific score for proteins^c; has value type^op some xsd double^c

scan^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000441

has super-classes: part_of^op some spectrum generation information^c

scan attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000503

has super-classes: object attribute^c; part_of^op some scan^c
has sub-classes: analyzer scan offset^c, dwell time^c, elution time^c, filter string^c, first column elution time^c, instrument specific scan attribute^c, interchannel delay^c, ion injection time^c, ion mobility attribute^c, mass resolution^c, mass resolving power^c, preset scan configuration^c, scan number^c, scan rate^c, scan start time^c, second column elution time^c, zoom scan^c

scan direction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000018

has super-classes: part_of^op some scan^c
has sub-classes: decreasing m/z scan^c, increasing m/z scan^c

Scan Function^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000017

OBSOLETE This former purgatory term was made obsolete.

scan law^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000019

has super-classes: part_of^op some scan^c
has sub-classes: exponential^c, linear^c, quadratic^c

scan m/z range?^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000313

This former purgatory term was made obsolete.

scan mode^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000036

This term was made obsolete because .

scan number^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003057

has super-classes: scan attribute^c

scan number only nativeID format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000776

Used for conversion from mzXML, or DTA folder where native scan numbers can be derived.

has super-classes: native spectrum identifier format^c

scan number only nativeID format, combined spectra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002655

Used for conversion from mzXML, or DTA folder where native scan numbers can be derived.

has super-classes: native spectrum identifier format, combined spectra^c; has value type^op some xsd string^c

scan number(s)^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001115

This former purgatory term was made obsolete.

scan polarity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000465

has super-classes: part_of^op some scan^c
has sub-classes: negative scan^c, positive scan^c

scan rate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000015

has super-classes: scan attribute^c; has_units^op some Th/s^c; has value type^op some xsd float^c

scan start time^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000016

has super-classes: scan attribute^c; PSM-level attribute^c; has_units^op some u o 0000010^c; has_units^op some u o 0000031^c; has value type^op some xsd float^c

scan window lower limit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000501

has super-classes: selection window attribute^c; has_units^op some m/z^c; has value type^op some xsd float^c

scan window upper limit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000500

has super-classes: selection window attribute^c; has_units^op some m/z^c; has value type^op some xsd float^c

scanning method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000020

OBSOLETE This former purgatory term was made obsolete.

scanning quadrupole position lower bound m/z array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003157

has super-classes: binary data array^c; has_units^op some m/z^c; has value type^op some xsd float^c

scanning quadrupole position upper bound m/z array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003158

has super-classes: binary data array^c; has_units^op some m/z^c; has value type^op some xsd float^c

SCIEX API III format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001246

has super-classes: mass spectrometer file format^c

SCIEX instrument model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000121

has super-classes: instrument model^c
has sub-classes: 2000 QTRAP^c, 2500 QTRAP^c, 3200 QTRAP^c, 3500 QTRAP^c, 4000 QTRAP^c, 4000 QTRAP^c, 4800 Plus MALDI TOF/TOF^c, 5800 TOF/TOF^c, API 100^c, API 100LC^c, API 150EX^c, API 150EX Prep^c, API 165^c, API 2000^c, API 300^c, API 3000^c, API 3200^c, API 350^c, API 365^c, API 4000^c, API 5000^c, Q TRAP^c, QSTAR^c, QSTAR Elite^c, QSTAR Pulsar^c, QSTAR XL^c, QTRAP 4500^c, QTRAP 5500^c, QTRAP 6500^c, QTRAP 6500+^c, SymBiot I^c, SymBiot XVI^c, Triple Quad 3500^c, Triple Quad 4500^c, Triple Quad 5500^c, Triple Quad 6500^c, Triple Quad 6500+^c, Triple Quad 7500^c, TripleTOF 4600^c, TripleTOF 5600^c, TripleTOF 5600+^c, TripleTOF 6600^c, X500R QTOF^c, proteomics solution 1^c

SCIEX software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000690

has super-classes: software^c
has sub-classes: 4000 Series Explorer Software^c, Analyst^c, BioAnalyst^c, Cliquid^c, GPS Explorer^c, LightSight Software^c, MIDAS Workflow Designer^c, MRMPilot Software^c, MarkerView Software^c, MultiQuant^c, Pro BLAST^c, Pro ICAT^c, Pro ID^c, Pro Quant^c, ProteinPilot Software^c, SCIEX TOF/TOF Series Explorer Software^c, TissueView Software^c

SCIEX TOF/TOF database^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001481

has super-classes: mass spectrometer file format^c

SCIEX TOF/TOF nativeID format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001480

has super-classes: native spectrum identifier format^c

SCIEX TOF/TOF Series Explorer Software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001483

has super-classes: SCIEX software^c; acquisition software^c; analysis software^c; data processing software^c

SCIEX TOF/TOF T2D format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001560

has super-classes: mass spectrometer file format^c

SCIEX TOF/TOF T2D nativeID format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001559

has super-classes: native spectrum identifier format^c

SCiLS Lab^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002384

has super-classes: analysis software^c; data processing software^c; SCiLS software^c

SCiLS Lab format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002385

has super-classes: mass spectrometer file format^c

SCiLS software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002383

has super-classes: software^c
has sub-classes: SCiLS Lab^c

SCION SQ^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002295

has super-classes: Bruker Daltonics SCION series^c

SCION TQ^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002296

has super-classes: Bruker Daltonics SCION series^c

search database details^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001011

has super-classes: search input details^c
has sub-classes: database file formats^c, database filtering^c, database local file path^c, database name^c, database original uri^c, database sequence details^c, database source^c, database type^c, database version^c, decoy DB details^c, number of decoy sequences^c, number of peptide seqs compared to each spectrum^c, number of sequences searched^c, release date^c, translation frame^c, translation start codons^c, translation table^c, translation table description^c

search engine input parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002093

has super-classes: search input details^c
has sub-classes: common search engine input parameter^c, search engine specific input parameter^c

Search engine output file URI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002849

has super-classes: Associated file URI^c; has value type^op some xsd string^c

search engine specific input metadata^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002432

has super-classes: search input details^c
has sub-classes: Paragon: modified data dictionary or parameter translation^c

search engine specific input parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001302

has super-classes: search engine input parameter^c
has sub-classes: Mascot input parameter^c, OMSSA input parameter^c, PIA workflow parameter^c, Paragon input parameter^c, Phenyx input parameter^c, ProSight input parameter^c, ProteinExtractor input parameter^c, ProteinScape input parameter^c, ProteomeDiscoverer input parameter^c, SEQUEST input parameter^c, TDPortal input parameter^c, TopMG input parameter^c, TopPIC input parameter^c

search engine specific peptide sequence-level identification statistic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002358

has super-classes: peptide sequence-level identification statistic^c
has sub-classes: Andromeda peptide PEP^c, MaxQuant-DIA peptide PEP^c, OpenMS:Best PSM Score^c, OpenMS:Target-decoy peptide q-value^c, PeptideShaker peptide confidence type^c, PeptideShaker peptide score^c, Phenyx:PepPvalue^c, distinct peptide-level FDRScore^c, distinct peptide-level combined FDRScore^c, peptide level score^c

search engine specific score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001153

has super-classes: single identification result attribute^c
has sub-classes: Byonic:Best LogProb^c, Comet:expectation value^c, FDRScore^c, IdentiPy:RHNS^c, IdentiPy:hyperscore^c, OpenPepXL:score^c, OpenXQuest:combined score^c, OpenXQuest:intsum^c, OpenXQuest:match-odds^c, OpenXQuest:wTIC^c, OpenXQuest:xcorr common^c, OpenXQuest:xcorr xlink^c, ProteinProphet:peptide group weight^c, ProteinProphet:peptide weight^c, SEQUEST:consensus score^c, SEQUEST:expectation value^c, combined FDRScore^c, protein ambiguity group result details^c

search engine specific score for protein groups^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002368

has super-classes: protein group-level identification statistic^c
has sub-classes: MaxQuant protein group-level score^c, MetaMorpheus:protein score^c, Morpheus:summed Morpheus score^c, Paragon:total protscore^c, Paragon:unused protscore^c, PeptideShaker protein group score^c, ProteoAnnotator:count alternative peptides^c, ProteoAnnotator:non-canonical gene model score^c, ProteoGrouper:PAG score^c, protein group-level FDRScore^c, protein group-level combined FDRScore^c

search engine specific score for proteins^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002363

has super-classes: single protein identification statistic^c
has sub-classes: Byonic: Protein AbsLogProb^c, Byonic:Best Score^c, Byonic:Protein LogProb^c, EPIFANY:Protein posterior probability^c, FDRScore for proteins^c, MRMaid:peptide score^c, MS-GF:DeNovoScore^c, OpenMS:Target-decoy protein q-value^c, PEAKS:inChorusProteinScore^c, PEAKS:proteinScore^c, PIA:protein score^c, PSM-level FDRScore^c, PSM-level combined FDRScore^c, Paragon:confidence^c, Paragon:contrib^c, Paragon:expression change p-value^c, Paragon:expression error factor^c, Paragon:score^c, Paragon:total protscore^c, Paragon:unused protscore^c, PeptideShaker peptide confidence^c, PeptideShaker peptide score^c, PeptideShaker protein group confidence^c, PeptideShaker protein group score^c, Phenyx:AC^c, Phenyx:ID^c, Phenyx:Modif^c, Phenyx:Peptides1^c, Phenyx:Peptides2^c, Phenyx:Score^c, Phenyx:User^c, ProteinExtractor:Score^c, ProteoGrouper:PDH score^c, SEQUEST:Sequences^c, SEQUEST:Sum^c, SEQUEST:TIC^c, SEQUEST:Uniq^c, SEQUEST:sp^c, SQID:protein score^c, Scaffold:Protein Probability^c, combined FDRScore for proteins^c, cross-linking score^c, distinct peptide-level FDRScore^c, distinct peptide-level combined FDRScore^c

search engine specific score for proteoforms^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002906

has super-classes: proteoform-level identification statistic^c
has sub-classes: TopMG:proteoform-level FDR^c, TopPIC:proteoform-level FDR^c

search input details^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001249

has super-classes: part_of^op some spectrum interpretation^c
has sub-classes: Paragon: digestion^c, TODOscoring model^c, cleavage agent details^c, ion series considered in search^c, ions series considered in search^c, mass type settings^c, number of spectra searched^c, quality estimation method details^c, search database details^c, search engine input parameter^c, search engine specific input metadata^c, search tolerance specification^c, search type^c, software input parameter^c, spectra data details^c, spectrum descriptions^c

search result details^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001213

This former purgatory term was made obsolete.

search statistics^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001184

has super-classes: spectrum identification result details^c
has sub-classes: date / time search performed^c, number of molecular hypothesis considered^c, search time taken^c, study variable average function^c, study variable variation function^c

search time taken^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001036

has super-classes: search statistics^c; has value type^op some xsd positive integer^c

search tolerance minus value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001413

has super-classes: search tolerance specification^c; has_units^op some u o 0000166^c; has_units^op some u o 0000169^c; has_units^op some u o 0000187^c; has_units^op some u o 0000221^c; has value type^op some xsd double^c

search tolerance plus value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001412

has super-classes: search tolerance specification^c; has_units^op some u o 0000166^c; has_units^op some u o 0000169^c; has_units^op some u o 0000187^c; has_units^op some u o 0000221^c; has value type^op some xsd double^c

search tolerance specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001411

has super-classes: search input details^c
has sub-classes: search tolerance minus value^c, search tolerance plus value^c

search type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001080

has super-classes: search input details^c
has sub-classes: combined ms-ms + spectral library search^c, combined pmf + ms-ms search^c, de novo search^c, ms-ms search^c, pmf search^c, special processing^c, spectral library search^c, tag search^c

second^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000039

This term was made obsolete because it was redundant with Unit Ontology second (UO:0000010).

second column elution time^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002083

has super-classes: scan attribute^c; has_units^op some u o 0000010^c; has_units^op some u o 0000031^c; has value type^op some xsd float^c

second-pass peptide identification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002341

has super-classes: peptide sequence-level identification attribute^c; has value type^op some xsd boolean^c

secondary electron^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000352

This former purgatory term was made obsolete.

secondary ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000402

has super-classes: ionization type^c

secondary isotope peak^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002697

has super-classes: fragmentation ion type^c

sector mass spectrometer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000301

This child of the former purgatory term mass spectrometer was made obsolete.

SELECT SERIES Cyclic IMS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003184

has super-classes: Waters instrument model^c

SELECT SERIES MRT^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003185

has super-classes: Waters instrument model^c

selected ion current chromatogram^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000627

has super-classes: ion current chromatogram^c

selected ion detection^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000091

This child of the former purgatory term Scan Function was made obsolete.

selected ion flow tube^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000281

has super-classes: ion optics type^c

selected ion m/z^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000744

has super-classes: ion selection attribute^c; has_units^op some m/z^c; has value type^op some xsd float^c

selected ion monitoring^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000205

has super-classes: mass spectrometry acquisition method^c; data-independent acquisition^c

selected ion monitoring chromatogram^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001472

has super-classes: ion current chromatogram^c

selected precursor m/z^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002234

has super-classes: ion selection attribute^c; has_units^op some m/z^c; has value type^op some xsd float^c

selected reaction monitoring^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000206

has super-classes: mass spectrometry acquisition method^c; data-independent acquisition^c

selected reaction monitoring chromatogram^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001473

has super-classes: ion current chromatogram^c

selection window attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000549

has super-classes: object attribute^c; part_of^op some scan^c
has sub-classes: scan window lower limit^c, scan window upper limit^c

senior author^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002035

has super-classes: contact role^c

septum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000068

has super-classes: inlet type^c

SeqStatus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001015

has super-classes: PEFF file sequence entry term^c; has regexp^op some regular expression for PEFF sequence status^c; has value type^op some xsd string^c

sequence coverage^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001093

has super-classes: protein-level identification attribute^c; has value type^op some xsd decimal^c

Sequence database filter types^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001511

has super-classes: database filtering^c
has sub-classes: DB MW filter^c, DB PI filter^c, DB filter on accession numbers^c, DB filter on sequence pattern^c, DB filter taxonomy^c

Sequence database filters^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001512

has super-classes: database filtering^c
has sub-classes: DB MW filter maximum^c, DB MW filter minimum^c, DB PI filter maximum^c, DB PI filter minimum^c, DB accession filter string^c, DB sequence filter pattern^c, molecule taxonomy^c

sequence multiply subsumable protein^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002570

has super-classes: protein group or subset relationship^c; has value type^op some xsd string^c

sequence same-set protein^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001594

has super-classes: protein group or subset relationship^c; has value type^op some xsd string^c

sequence sub-set protein^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001596

has super-classes: protein group or subset relationship^c; has value type^op some xsd string^c

sequence subsumable protein^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001598

has super-classes: protein group or subset relationship^c; has value type^op some xsd string^c

sequence-level spectral count^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001842

has super-classes: peptide-level quantification datatype^c; has value type^op some xsd int^c

SequenceType^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000017

has super-classes: PEFF file header section term^c; has regexp^op some regular expression for PEFF molecular sequence type^c; has value type^op some xsd string^c

sequential m/z separation method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000445

This former purgatory term was made obsolete.

SEQUEST^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001208

has super-classes: analysis software^c

SEQUEST input parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002096

has super-classes: search engine specific input parameter^c
has sub-classes: SEQUEST:CleavesAt^c, SEQUEST:DescriptionLines^c, SEQUEST:LimitTo^c, SEQUEST:NormalizeXCorrValues^c, SEQUEST:OutputLines^c, SEQUEST:ProcessCV^c, SEQUEST:SequenceHeaderFilter^c, SEQUEST:SequencePartialFilter^c, SEQUEST:ShowFragmentIons^c, SEQUEST:ViewCV^c, SEQUEST:modeCV^c, SEQUEST:selectCV^c

SEQUEST out file format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001200

has super-classes: intermediate analysis format^c

SEQUEST out folder^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001242

has super-classes: intermediate analysis format^c

SEQUEST SQT format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001563

has super-classes: intermediate analysis format^c

SEQUEST summary^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001243

has super-classes: intermediate analysis format^c

SEQUEST:Chromatogram^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001102

has super-classes: SEQUEST:ViewCV^c; has value type^op some xsd boolean^c

SEQUEST:CleavesAt^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001005

has super-classes: SEQUEST input parameter^c; has value type^op some xsd string^c

SEQUEST:Consensus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001038

has super-classes: SEQUEST:ViewCV^c; has value type^op some xsd positive integer^c

SEQUEST:consensus score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001163

has super-classes: search engine specific score^c; has value type^op some xsd double^c

SEQUEST:CullTo^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001109

has super-classes: SEQUEST:ProcessCV^c; has value type^op some xsd string^c

SEQUEST:deltacn^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001156

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

SEQUEST:deltacnstar^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002250

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

SEQUEST:DescriptionLines^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001009

has super-classes: SEQUEST input parameter^c; has value type^op some xsd string^c

SEQUEST:expectation value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001159

has super-classes: search engine specific score^c; has value type^op some xsd double^c

SEQUEST:Fast^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001126

has super-classes: SEQUEST:modeCV^c; has value type^op some xsd boolean^c

SEQUEST:FormatAndLinks^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001120

has super-classes: SEQUEST:modeCV^c; has value type^op some xsd boolean^c

SEQUEST:Full^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001111

has super-classes: SEQUEST:modeCV^c; has value type^op some xsd boolean^c

SEQUEST:InfoAndLog^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001103

has super-classes: SEQUEST:ViewCV^c; has value type^op some xsd boolean^c

SEQUEST:LimitTo^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001042

has super-classes: SEQUEST input parameter^c; has value type^op some xsd positive integer^c

SEQUEST:matched ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001161

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd integer^c

SEQUEST:modeCV^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001110

has super-classes: SEQUEST input parameter^c
has sub-classes: SEQUEST:Fast^c, SEQUEST:FormatAndLinks^c, SEQUEST:Full^c

SEQUEST:NormalizeXCorrValues^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001026

has super-classes: SEQUEST input parameter^c; has value type^op some xsd boolean^c

SEQUEST:OutputLines^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001007

has super-classes: SEQUEST input parameter^c; has value type^op some xsd non negative integer^c

SEQUEST:PeptideIdnumber^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001219

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd integer^c

SEQUEST:PeptideNumber^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001218

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd integer^c

SEQUEST:PeptideRankSp^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001217

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd integer^c

SEQUEST:PeptideSp^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001215

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

SEQUEST:probability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001154

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

SEQUEST:ProcessAll^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001095

has super-classes: SEQUEST:ProcessCV^c; has value type^op some xsd boolean^c

SEQUEST:ProcessCV^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001087

has super-classes: SEQUEST input parameter^c
has sub-classes: SEQUEST:CullTo^c, SEQUEST:ProcessAll^c, SEQUEST:TopNumber^c, SEQUEST:TopPercentMostIntense^c

SEQUEST:SelectAdvancedCV^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001145

has super-classes: SEQUEST:selectCV^c

SEQUEST:selectCV^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001128

has super-classes: SEQUEST input parameter^c
has sub-classes: SEQUEST:SelectAdvancedCV^c, SEQUEST:SelectDefault^c

SEQUEST:SelectDefault^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001144

has super-classes: SEQUEST:selectCV^c

SEQUEST:SequenceHeaderFilter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001028

has super-classes: SEQUEST input parameter^c; has value type^op some xsd string^c

SEQUEST:SequencePartialFilter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001032

has super-classes: SEQUEST input parameter^c; has value type^op some xsd string^c

SEQUEST:Sequences^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001372

has super-classes: search engine specific score for proteins^c; has value type^op some xsd positive integer^c

SEQUEST:sf^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001160

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

SEQUEST:ShowFragmentIons^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001037

has super-classes: SEQUEST input parameter^c; has value type^op some xsd boolean^c

SEQUEST:sort by dCn^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001046

has super-classes: SEQUEST:sortCV^c; has value type^op some xsd boolean^c

SEQUEST:sort by dM^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001047

has super-classes: SEQUEST:sortCV^c; has value type^op some xsd boolean^c

SEQUEST:sort by Ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001048

has super-classes: SEQUEST:sortCV^c; has value type^op some xsd boolean^c

SEQUEST:sort by MH+^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001049

has super-classes: SEQUEST:sortCV^c; has value type^op some xsd boolean^c

SEQUEST:sort by P^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001050

has super-classes: SEQUEST:sortCV^c; has value type^op some xsd boolean^c

SEQUEST:sort by PreviousAminoAcid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001052

has super-classes: SEQUEST:sortCV^c; has value type^op some xsd boolean^c

SEQUEST:sort by Ref^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001053

has super-classes: SEQUEST:sortCV^c; has value type^op some xsd boolean^c

SEQUEST:sort by RSp^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001059

has super-classes: SEQUEST:sortCV^c; has value type^op some xsd boolean^c

SEQUEST:sort by Scan^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001070

has super-classes: SEQUEST:sortCV^c; has value type^op some xsd boolean^c

SEQUEST:sort by Sequence^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001071

has super-classes: SEQUEST:sortCV^c; has value type^op some xsd boolean^c

SEQUEST:sort by Sf^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001072

has super-classes: SEQUEST:sortCV^c; has value type^op some xsd boolean^c

SEQUEST:sort by Sp^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001068

has super-classes: SEQUEST:sortCV^c; has value type^op some xsd boolean^c

SEQUEST:sort by TIC^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001069

has super-classes: SEQUEST:sortCV^c; has value type^op some xsd boolean^c

SEQUEST:sort by XCorr^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001086

has super-classes: SEQUEST:sortCV^c; has value type^op some xsd boolean^c

SEQUEST:sort by z^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001094

has super-classes: SEQUEST:sortCV^c; has value type^op some xsd boolean^c

SEQUEST:sortCV^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001041

has super-classes: SEQUEST:ViewCV^c
has sub-classes: SEQUEST:sort by Ions^c, SEQUEST:sort by MH+^c, SEQUEST:sort by P^c, SEQUEST:sort by PreviousAminoAcid^c, SEQUEST:sort by RSp^c, SEQUEST:sort by Ref^c, SEQUEST:sort by Scan^c, SEQUEST:sort by Sequence^c, SEQUEST:sort by Sf^c, SEQUEST:sort by Sp^c, SEQUEST:sort by TIC^c, SEQUEST:sort by XCorr^c, SEQUEST:sort by dCn^c, SEQUEST:sort by dM^c, SEQUEST:sort by z^c

SEQUEST:sp^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001157

has super-classes: search engine specific score for proteins^c; has value type^op some xsd double^c

SEQUEST:sprank^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002249

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd int^c

SEQUEST:spscore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002248

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

SEQUEST:Sum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001374

has super-classes: search engine specific score for proteins^c; has value type^op some xsd double^c

SEQUEST:TIC^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001373

has super-classes: search engine specific score for proteins^c; has value type^op some xsd double^c

SEQUEST:TopNumber^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001106

has super-classes: SEQUEST:ProcessCV^c; has value type^op some xsd positive integer^c

SEQUEST:TopPercentMostIntense^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001096

has super-classes: SEQUEST:ProcessCV^c; has value type^op some xsd double^c

SEQUEST:total ions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001162

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd integer^c

SEQUEST:Uniq^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001158

has super-classes: search engine specific score for proteins^c; has value type^op some xsd double^c

SEQUEST:ViewCV^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001006

has super-classes: SEQUEST input parameter^c
has sub-classes: SEQUEST:Chromatogram^c, SEQUEST:Consensus^c, SEQUEST:InfoAndLog^c, SEQUEST:sortCV^c

SEQUEST:xcorr^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001155

has super-classes: PSM-level search engine specific statistic^c; has_order^op some higher score better^c; has value type^op some xsd double^c

SHA-1^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000569

has super-classes: data file checksum type^c; has value type^op some xsd string^c

SHA-256^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003151

has super-classes: data file checksum type^c; has value type^op some xsd string^c

Shimadzu Biotech database entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000930

has super-classes: mass spectrometer file format^c

Shimadzu Biotech LCD format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003009

has super-classes: mass spectrometer file format^c

Shimadzu Biotech nativeID format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000929

has super-classes: native spectrum identifier format^c

Shimadzu Biotech QTOF nativeID format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002898

has super-classes: native spectrum identifier format^c

Shimadzu Corporation software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001557

has super-classes: software^c
has sub-classes: MALDI Solutions^c, MALDI Solutions LC-MALDI^c

Shimadzu instrument model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000124

has super-classes: instrument model^c
has sub-classes: Shimadzu MALDI-TOF instrument model^c, Shimadzu Scientific Instruments instrument model^c

Shimadzu MALDI-7090^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002382

has super-classes: Shimadzu MALDI-TOF instrument model^c

Shimadzu MALDI-TOF instrument model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000602

has super-classes: Shimadzu instrument model^c
has sub-classes: AXIMA Assurance Linear MALDI-TOF^c, AXIMA CFR MALDI-TOF^c, AXIMA Confidence MALDI-TOF^c, AXIMA Performance MALDI-TOF/TOF^c, AXIMA-CFR plus^c, AXIMA-QIT^c, Shimadzu MALDI-7090^c

Shimadzu Scientific Instruments instrument model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000603

has super-classes: Shimadzu instrument model^c
has sub-classes: GCMS-QP2010SE^c, LCMS-2010A^c, LCMS-2010EV^c, LCMS-2020^c, LCMS-8040^c, LCMS-8045^c, LCMS-8050^c, LCMS-8060^c, LCMS-9030^c, LCMS-IT-TOF^c

shuffle-and-reposition decoy spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003193

has super-classes: decoy spectrum^c

signal peptide^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001021

has super-classes: PEFF molecule processing keyword^c; has regexp^op some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment^c; has value type^op some xsd string^c

signal to noise array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000517

has super-classes: binary data array^c

signal-to-noise ratio^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001884

has super-classes: transition validation attribute^c; has value type^op some xsd float^c

SILAC heavy reagent^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002612

has super-classes: SILAC reagent^c

SILAC light reagent^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002614

has super-classes: SILAC reagent^c

SILAC medium reagent^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002613

has super-classes: SILAC reagent^c

SILAC quantitation analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001835

has super-classes: quantitation analysis summary^c

SILAC reagent^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002611

has super-classes: sample label^c
has sub-classes: SILAC heavy reagent^c, SILAC light reagent^c, SILAC medium reagent^c

SILACAnalyzer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001831

has super-classes: TOPP software^c; quantitation software name^c

SIM spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000582

has super-classes: mass spectrum^c

SIM-XL^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003109

has super-classes: analysis software^c

SIM-XL score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003110

has super-classes: PSM-level search engine specific statistic^c; has_order^op some higher score better^c; has value type^op some xsd double^c

similar spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003262

has super-classes: library spectrum cross reference^c
has sub-classes: similar spectrum USI^c, similar spectrum keys^c

similar spectrum keys^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003263

has super-classes: similar spectrum^c; has value type^op some list of integers^c

similar spectrum USI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003264

has super-classes: similar spectrum^c; has value type^op some xsd string^c

simple ratio of two values^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001848

has super-classes: ratio calculation method^c

single identification result attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002694

has super-classes: identification attribute^c
has sub-classes: PSM-level attribute^c, cross-linking attribute^c, isoform-level identification attribute^c, peptide sequence-level identification attribute^c, product ion attribute^c, protein cluster identification attribute^c, protein group-level identification attribute^c, protein-level identification attribute^c, proteoform-level identification attribute^c, search engine specific score^c, small molecule confidence measure^c, small molecule identification attribute^c

single ion monitoring^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000102

This term was made obsolete because it was replaced by single ion monitoring (MS:100205).

single peak list nativeID format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000775

The nativeID must be the same as the source file ID. Used for conversion of peak list files with one spectrum per file, typically folder of PKL or DTAs, each sourceFileRef is different.

has super-classes: native spectrum identifier format^c

single peak list nativeID format, combined spectra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002654

The nativeID must be the same as the source file ID. Used for conversion of peak list files with one spectrum per file, typically folder of PKL or DTAs, each sourceFileRef is different.

has super-classes: native spectrum identifier format, combined spectra^c; has value type^op some xsd string^c

single protein identification statistic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001116

has super-classes: protein-level identification attribute^c
has sub-classes: Byonic:Best LogProb^c, Expect value^c, PeptideShaker protein confidence type^c, confidence score^c, local FDR^c, manual validation^c, probability for proteins^c, protein identification confidence metric^c, protein-level e-value^c, protein-level local FDR^c, protein-level p-value^c, protein-level q-value^c, search engine specific score for proteins^c

single reaction monitoring^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000103

This term was made obsolete because it was replaced by selected reaction monitoring (MS:1000206).

single run based metric^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000012

has super-classes: QC metric category^c

single spectrum based metric^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000014

has super-classes: QC metric category^c

single value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000003

has super-classes: QC metric value type^c
has sub-classes: MS run duration^c, XIC50 fraction^c, chromatography duration^c, fastest frequency for MS level 1 collection^c, fastest frequency for MS level 2 collection^c, number of MS1 spectra^c, number of MS2 spectra^c, number of chromatograms^c

singleton spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003066

has super-classes: spectrum aggregation type^c

site:global FDR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002339

has super-classes: spectrum identification result details^c; has value type^op some xsd double^c

Skyline^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000922

has super-classes: SRM software^c; quantitation software name^c

Skyline mzQuantML converter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002546

has super-classes: quantitation software name^c; analysis software^c

small molecule^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003035

has super-classes: molecule^c
has sub-classes: amino acid^c, deoxyribonucleotide^c, metabolite^c, monosaccharide^c, ribonucleotide^c

small molecule analysis software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002878

has super-classes: analysis software^c
has sub-classes: Compound Discoverer^c, MS-DIAL^c, MyCompoundID^c, PeakForest^c, Progenesis QI^c, lipidomics analysis software^c

small molecule attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002118

has super-classes: quantification object attribute^c

small molecule confidence measure^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002888

has super-classes: single identification result attribute^c
has sub-classes: Progenesis MetaScope score^c, fragmentation score^c, isotopic fit score^c

small molecule identification attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002895

has super-classes: single identification result attribute^c
has sub-classes: compound identification confidence code in MS-DIAL^c, compound identification confidence level^c, hr-ms compound identification confidence level^c

small molecule list attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002117

has super-classes: quantification object attribute^c

small molecule modification attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002119

has super-classes: quantification object attribute^c

small molecule quantification datatype^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002886

has super-classes: quantification datatype^c
has sub-classes: Progenesis QI normalised abundance^c

SMILES formula^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000868

has super-classes: chemical formula^c; has value type^op some xsd string^c

smoothing^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000592

has super-classes: data processing action^c
has sub-classes: Gaussian smoothing^c, LOWESS smoothing^c, Savitzky-Golay smoothing^c, moving average smoothing^c, wavelet transformation smoothing^c

soft ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000403

has super-classes: ionization type^c

software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000531

has super-classes: part_of^op some Proteomics Standards Initiative Mass Spectrometry Vocabularies^c
has sub-classes: Agilent software^c, Applied Biosystems software^c, BSI software^c, Bruker software^c, LECO software^c, SCIEX software^c, SCiLS software^c, SRM software^c, Shimadzu Corporation software^c, Thermo Finnigan software^c, Waters software^c, acquisition software^c, analysis software^c, custom unreleased software tool^c, data processing software^c, library creation software^c, peptide attribute calculation software^c, quantitation software name^c

software input parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002103

has super-classes: search input details^c
has sub-classes: common software input parameter^c, software specific input parameter^c

software specific input parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002105

has super-classes: software input parameter^c
has sub-classes: PIA workflow parameter^c, Percolator input parameter^c, Scaffold input parameter^c

software vendor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001267

has super-classes: role type^c

software version^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003200

has super-classes: spectral library attribute^c; has value type^op some xsd string^c

solariX^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001549

has super-classes: Bruker Daltonics solarix series^c

solid sample state^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000050

has super-classes: sample state^c

solid-state laser^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000851

has super-classes: laser type^c

solution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000051

has super-classes: sample state^c

Sonar:Score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001502

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

sophisticated numerical annotation procedure^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001998

has super-classes: area peak picking^c

source^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000458

has super-classes: part_of^op some instrument^c

source attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000482

has super-classes: part_of^op some source^c
has sub-classes: S-lens voltage^c, cone voltage^c, declustering potential^c, inlet temperature^c, ionization efficiency^c, offset voltage^c, source potential^c, source temperature^c, tube lens voltage^c

source data file^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000577

has super-classes: spectrum attribute^c; part_of^op some spectrum generation information^c
has sub-classes: processed data file^c, raw data file^c

source interface^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001931

has super-classes: part_of^op some source^c

source interface manufacturer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001953

has super-classes: has value type^op some xsd string^c; part_of^op some source interface^c

source interface model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001932

has super-classes: has value type^op some xsd string^c; part_of^op some source interface^c

source potential^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000486

has super-classes: source attribute^c; has_units^op some u o 0000218^c; has value type^op some xsd float^c

source sprayer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001933

has super-classes: has value type^op some xsd string^c; part_of^op some source^c

source sprayer manufacturer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001935

has super-classes: has value type^op some xsd string^c; part_of^op some source sprayer^c

source sprayer model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001936

has super-classes: has value type^op some xsd string^c; part_of^op some source sprayer^c

source sprayer type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001934

has super-classes: part_of^op some source sprayer^c

source temperature^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002041

has super-classes: source attribute^c; has_units^op some u o 0000012^c; has_units^op some u o 0000027^c; has value type^op some xsd float^c

space charge effect^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000319

has super-classes: ion optics attribute^c

spark ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000404

has super-classes: ionization type^c

Spark Source Mass Spectrometry^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000283

This term was made obsolete because it was replaced by spark ionization (MS:1000404).

spControl^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000737

has super-classes: Bruker software^c; acquisition software^c

special processing^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002489

has super-classes: search type^c; part_of^op some spectrum interpretation^c
has sub-classes: consensus scoring^c, cross-linking search^c, modification localization scoring^c, no special processing^c, peptide-level scoring^c, proteogenomics search^c, sample pre-fractionation^c

SpecificKey^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000018

has super-classes: PEFF file header section term^c; has value type^op some xsd string^c

SpecificValue^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000019

has super-classes: PEFF file header section term^c; has value type^op some xsd string^c

spectra combination^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000570

has super-classes: part_of^op some spectrum^c
has sub-classes: mean of spectra^c, median of spectra^c, no combination^c, sum of spectra^c

spectra data details^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001529

has super-classes: search input details^c
has sub-classes: mzML unique identifier^c, spectrum from ProteinScape database nativeID format^c, spectrum from database string nativeID format^c

spectra half-TIC^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000068

has super-classes: table^c; has_column^op some u o 0000191^c; has_metric_category^op some ID free metric^c; has_metric_category^op some single run based metric^c; has_metric_category^op some MS2 metric^c; has_optional_column^op some native spectrum identifier format^c; has_optional_column^op some universal spectrum identifier^c; has relation^op some total ion current^c

SpectraFilter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000765

This term was made obsolete, because it is replaced by the terms under the 'TOPP spectra filter' (MS:1002137) branch.

has super-classes: TOPP software^c

spectral count feature^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002121

has super-classes: feature attribute^c

spectral count peptide level quantitation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002015

has super-classes: spectral counting quantitation analysis^c; has value type^op some xsd boolean^c

spectral count protein level quantitation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002016

has super-classes: spectral counting quantitation analysis^c; has value type^op some xsd boolean^c

spectral count proteingroup level quantitation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002017

has super-classes: spectral counting quantitation analysis^c; has value type^op some xsd boolean^c

spectral counting quantitation analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001836

has super-classes: quantitation analysis summary^c
has sub-classes: spectral count peptide level quantitation^c, spectral count protein level quantitation^c, spectral count proteingroup level quantitation^c

spectral library^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003170

has super-classes: part_of^op some Proteomics Standards Initiative Mass Spectrometry Vocabularies^c

spectral library attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003171

has super-classes: part_of^op some spectral library^c
has sub-classes: change log^c, copyright notice^c, library URI^c, library analyte attribute set^c, library creation software^c, library description^c, library format version^c, library identifier^c, library interpretation attribute set^c, library name^c, library provenance attribute^c, library spectrum attribute set^c, library version^c, license URI^c, release date^c, software version^c

spectral library search^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001031

has super-classes: search type^c

SpectraST^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001477

has super-classes: analysis software^c

SpectraST:delta^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001420

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

SpectraST:discriminant score F^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001419

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

SpectraST:dot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001417

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

SpectraST:dot_bias^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001418

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000442

has super-classes: part_of^op some spectrum generation information^c
has sub-classes: interpreted spectrum^c, uninterpreted spectrum^c

spectrum aggregation attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003064

has super-classes: spectrum attribute^c
has sub-classes: number of replicate spectra available^c, number of replicate spectra used^c, spectrum aggregation type^c

spectrum aggregation type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003065

has super-classes: spectrum aggregation attribute^c
has sub-classes: best replicate spectrum^c, consensus spectrum^c, singleton spectrum^c

spectrum attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000499

has super-classes: part_of^op some spectrum^c
has sub-classes: NIST msp comment^c, ms level^c, precursor apex intensity^c, previous MSn-1 scan precursor intensity^c, source data file^c, spectrum aggregation attribute^c, spectrum name^c, spectrum origin attribute^c, spectrum title^c, universal spectrum identifier^c

spectrum cluster^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003265

has super-classes: part_of^op some spectral library^c

spectrum cluster attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003266

has super-classes: part_of^op some spectrum cluster^c
has sub-classes: spectrum cluster key^c, spectrum cluster member USI^c, spectrum cluster member spectrum keys^c

spectrum cluster key^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003267

has super-classes: spectrum cluster attribute^c; has value type^op some xsd integer^c

spectrum cluster member spectrum keys^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003268

has super-classes: spectrum cluster attribute^c; has value type^op some list of integers^c

spectrum cluster member USI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003269

has super-classes: spectrum cluster attribute^c; has value type^op some xsd string^c

spectrum descriptions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001356

has super-classes: search input details^c
has sub-classes: spectrum quality descriptions^c

spectrum from database integer nativeID format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001526

A unique identifier of a spectrum stored in a database (e.g. a PRIMARY KEY identifier).

has super-classes: native spectrum identifier format^c

spectrum from database string nativeID format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001532

A unique identifier of a spectrum stored in a database (e.g. a PRIMARY KEY identifier).

has super-classes: native spectrum identifier format^c; spectra data details^c

spectrum from ProteinScape database nativeID format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001531

A unique identifier of a spectrum stored in a ProteinScape database.

has super-classes: native spectrum identifier format^c; spectra data details^c

spectrum generation information^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001458

has super-classes: part_of^op some Proteomics Standards Initiative Mass Spectrometry Vocabularies^c
has sub-classes: Experiment additional parameter^c, mass spectrometry acquisition method aspect^c, native source path^c

spectrum identification list result details^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002438

has super-classes: part_of^op some spectrum interpretation^c
has sub-classes: final PSM list^c, intermediate PSM list^c

spectrum identification result details^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001405

has super-classes: part_of^op some spectrum interpretation^c
has sub-classes: InChIKey^c, MGF raw scans^c, MGF scans^c, Mascot query number^c, PRIDE XML^c, PTM localization confidence metric^c, PTM localization score threshold^c, analysis attribute^c, consensus result^c, delta M^c, delta m/z^c, false localization rate^c, number of peptide seqs compared to each spectrum^c, peak list raw scans^c, peak list scans^c, search statistics^c, site:global FDR^c, spectrum title^c, spectrum title^c, splash key^c

spectrum identification statistical threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002573

has super-classes: statistical threshold^c
has sub-classes: PSM-level statistical threshold^c, peptide-level statistical threshold^c, proteoform-level statistical threshold^c

spectrum identifier nativeID format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000777

Used for conversion from mzData. The spectrum id attribute is referenced.

has super-classes: native spectrum identifier format^c

spectrum identifier nativeID format, combined spectra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002656

Used for conversion from mzData. The spectrum id attribute is referenced.

has super-classes: native spectrum identifier format, combined spectra^c; has value type^op some xsd string^c

spectrum instrument description^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000459

This former purgatory term was made obsolete.

spectrum interpretation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001000

has super-classes: part_of^op some Proteomics Standards Initiative Mass Spectrometry Vocabularies^c

Spectrum Mill for MassHunter Workstation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000687

has super-classes: Agilent software^c; analysis software^c; data processing software^c

spectrum multiply subsumable protein^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002571

has super-classes: protein group or subset relationship^c; has value type^op some xsd string^c

spectrum name^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003061

has super-classes: spectrum attribute^c

spectrum origin attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003071

has super-classes: spectrum attribute^c
has sub-classes: spectrum origin type^c

spectrum origin type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003072

has super-classes: spectrum origin attribute^c
has sub-classes: decoy spectrum^c, demultiplexed spectrum^c, observed spectrum^c, predicted spectrum^c

spectrum property^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003058

has super-classes: part_of^op some spectrum^c
has sub-classes: base peak intensity^c, base peak m/z^c, highest observed m/z^c, highest observed wavelength^c, lowest observed m/z^c, lowest observed wavelength^c, number of data points^c, number of peaks^c, peak list raw scans^c, peak list scans^c, total ion current^c

spectrum quality descriptions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001357

has super-classes: spectrum descriptions^c
has sub-classes: msmsEval quality^c

spectrum representation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000525

has super-classes: part_of^op some spectrum^c
has sub-classes: centroid spectrum^c, profile spectrum^c

spectrum same-set protein^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001595

has super-classes: protein group or subset relationship^c; has value type^op some xsd string^c

spectrum sub-set protein^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001597

has super-classes: protein group or subset relationship^c; has value type^op some xsd string^c

spectrum subsumable protein^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001599

has super-classes: protein group or subset relationship^c; has value type^op some xsd string^c

spectrum title^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000796

This is the preferred storage place for the spectrum TITLE from an MGF peak list.

has super-classes: spectrum attribute^c; spectrum identification result details^c; has value type^op some xsd string^c

spectrum title^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001416

has super-classes: spectrum identification result details^c; has value type^op some xsd string^c

spectrum type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000559

has super-classes: part_of^op some spectrum^c
has sub-classes: PDA spectrum^c, absorption spectrum^c, calibration spectrum^c, electromagnetic radiation spectrum^c, emission spectrum^c, mass spectrum^c

SpectrumMill directories^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001567

has super-classes: intermediate analysis format^c

SpectrumMill:Discriminant Score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001580

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

SpectrumMill:Score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001572

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

SpectrumMill:SPI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001573

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

spin coating MALDI sample preparation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001992

has super-classes: matrix application type^c

splash key^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002599

has super-classes: spectrum identification result details^c; has value type^op some xsd string^c

sprayed MALDI matrix preparation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000838

has super-classes: matrix application type^c

SQ Detector 2^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002274

has super-classes: Waters instrument model^c

SQID^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001886

has super-classes: analysis software^c; data processing software^c

SQID:deltaScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001888

has super-classes: PSM-level search engine specific statistic^c

SQID:protein score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001889

has super-classes: search engine specific score for proteins^c

SQID:score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001887

has super-classes: PSM-level search engine specific statistic^c

square root transform^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003241

has super-classes: peak intensity transform^c

SRM feature level quantitation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002281

has super-classes: SRM quantitation analysis^c

SRM peptide level quantitation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002282

has super-classes: SRM quantitation analysis^c

SRM protein level quantitation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002283

has super-classes: SRM quantitation analysis^c

SRM proteingroup level quantitation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002284

has super-classes: SRM quantitation analysis^c

SRM quantitation analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001838

has super-classes: quantitation analysis summary^c
has sub-classes: SRM feature level quantitation^c, SRM peptide level quantitation^c, SRM protein level quantitation^c, SRM proteingroup level quantitation^c

SRM software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000871

has super-classes: software^c
has sub-classes: ATAQS^c, Anubis^c, MRMaid^c, MaRiMba^c, Skyline^c, TIQAM^c

SRM spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000583

has super-classes: mass spectrum^c

SRM transition attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002222

has super-classes: ion selection attribute^c; part_of^op some transition^c
has sub-classes: number of precursor ion observations^c, number of product ion observations^c, precursor ion detection probability^c, product ion detection probability^c, product ion drift time^c

SRM transition ID^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001829

has super-classes: feature attribute^c; has value type^op some xsd string^c

SRM transition type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002006

has super-classes: part_of^op some transition^c
has sub-classes: decoy SRM transition^c, target SRM transition^c

SSQ 7000^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000748

has super-classes: Finnigan MAT instrument model^c

SSRCalc^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000874

has super-classes: peptide attribute calculation software^c

stable ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000378

This child of the former purgatory term ion stability type was made obsolete.

stainless steel plate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001939

has super-classes: sample plate type^c

standard^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000898

has super-classes: part_of^op some Proteomics Standards Initiative Mass Spectrometry Vocabularies^c
has sub-classes: de facto standard^c, minimum information standard^c, retention time normalization standard^c

standard error^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002885

has super-classes: study variable variation function^c

static field^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000320

has super-classes: ion optics type^c

static supply electrospray^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001942

has super-classes: electrospray supply type^c

statistical threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002482

has super-classes: quality estimation method details^c
has sub-classes: no threshold^c, protein detection statistical threshold^c, spectrum identification statistical threshold^c

stored waveform inverse fourier transform^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000284

has super-classes: mass analyzer type^c

stripped peptide sequence^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000888

has super-classes: peptidoform attribute^c; has value type^op some xsd string^c

structural formula^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000867

has super-classes: chemical formula^c; has value type^op some xsd string^c

study variable attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001807

has super-classes: quantification object attribute^c
has sub-classes: biological replicate^c, dilution series, concentration X^c, experimental condition 'case'^c, experimental condition 'control'^c, experimental condition 'disease'^c, experimental condition 'healthy'^c, generic experimental condition^c, technical replicate^c, time series, time point X^c

study variable average function^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002882

has super-classes: search statistics^c
has sub-classes: mean^c, median^c

study variable variation function^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002884

has super-classes: search statistics^c
has sub-classes: standard error^c, variation coefficient^c

submitter keyword^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001925

has super-classes: external reference keyword^c; has value type^op some xsd string^c

suface ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000280

This term was made obsolete because it was replaced by surface ionization (MS:1000406).

sum of MatchedFeature values^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001849

This term was made obsolete because the concept MatchedFeature was dropped.

has super-classes: feature-level quantification datatype^c; has value type^op some xsd double^c

sum of spectra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000571

has super-classes: spectra combination^c

superelastic collision^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000438

This child of the former purgatory term ion reaction was made obsolete.

supplemental beam-type collision-induced dissociation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002678

has super-classes: beam-type collision-induced dissociation^c

supplemental collision energy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002680

has super-classes: precursor activation attribute^c; has_units^op some u o 0000266^c; has value type^op some xsd float^c

supplemental collision-induced dissociation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002679

has super-classes: collision-induced dissociation^c

supported by repository but incomplete data and/or metadata^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003087

has super-classes: Experiment additional parameter^c

Supported dataset by repository^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002856

has super-classes: Experiment additional parameter^c

surface enhanced laser desorption ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000278

has super-classes: surface ionization^c

surface enhanced neat desorption^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000279

has super-classes: surface ionization^c

surface ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000406

has super-classes: ionization type^c
has sub-classes: surface enhanced laser desorption ionization^c, surface enhanced neat desorption^c

surface-assisted laser desorption ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000405

has super-classes: desorption ionization^c

surface-induced dissociation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000136

has super-classes: dissociation method^c

surface-induced reaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000439

This child of the former purgatory term ion reaction was made obsolete.

Surveyor MSQ^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000193

has super-classes: Thermo Finnigan instrument model^c

Surveyor PDA^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000622

has super-classes: Thermo Scientific instrument model^c

suspension^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000052

has super-classes: sample state^c

sustained off-resonance irradiation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000282

has super-classes: dissociation method^c

SV^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001007

has super-classes: PEFF file sequence entry term^c; has value type^op some xsd string^c

SymBiot I^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000194

has super-classes: SCIEX instrument model^c

SymBiot XVI^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000195

has super-classes: SCIEX instrument model^c

Synapt G2 HDMS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001777

has super-classes: Waters instrument model^c

Synapt G2 MS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001778

has super-classes: Waters instrument model^c

Synapt G2-S HDMS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001779

has super-classes: Waters instrument model^c

Synapt G2-S MS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001780

has super-classes: Waters instrument model^c

SYNAPT G2-Si^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002726

has super-classes: Waters instrument model^c

Synapt HDMS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001781

has super-classes: Waters instrument model^c

Synapt MS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001782

has super-classes: Waters instrument model^c

Synapt XS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003183

has super-classes: Waters instrument model^c

synchronous prefilter selection^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002528

has super-classes: instrument specific scan attribute^c

t-test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002070

has super-classes: quantification data processing^c; has value type^op some xsd string^c

t-test p-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001855

has super-classes: p-value^c; has value type^op some xsd double^c

tab delimited text format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000914

has super-classes: intermediate analysis format^c; file format^c
has sub-classes: mzTab^c

table^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000005

The actual structure of the table is defined in the mzQC specification document. In short: it must have at least one column, and MAY have optional columns.

has super-classes: QC metric value type^c
has sub-classes: MS2 known precursor charges fractions^c, MS2 unknown and likely precursor charges fractions^c, QC2 sample intensities^c, QC2 sample mass accuracies^c, spectra half-TIC^c

tag search^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001082

has super-classes: search type^c

TagRecon^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001587

has super-classes: analysis software^c

tandem mass spectrometer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000302

This child of the former purgatory term mass spectrometer was made obsolete.

target inclusion exclusion priority^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000919

has super-classes: part_of^op some target list^c
has sub-classes: excludes supersede includes^c, includes supersede excludes^c

target list^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000918

has super-classes: part_of^op some spectrum generation information^c

target SRM transition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002007

has super-classes: SRM transition type^c

TargetAnalysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000738

has super-classes: Bruker software^c

TaxName^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001004

has super-classes: PEFF file sequence entry term^c; has value type^op some xsd string^c

taxonomy nomenclature^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001090

has super-classes: molecule taxonomy^c

taxonomy: common name^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001468

has super-classes: molecule taxonomy^c; has value type^op some xsd string^c

taxonomy: NCBI TaxID^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001467

has super-classes: molecule taxonomy^c; has value type^op some xsd positive integer^c

taxonomy: scientific name^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001469

has super-classes: molecule taxonomy^c; has value type^op some xsd string^c

taxonomy: Swiss-Prot ID^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001470

has super-classes: molecule taxonomy^c; has value type^op some xsd string^c

TDPortal^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003142

has super-classes: analysis software^c

TDPortal input parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003137

has super-classes: search engine specific input parameter^c
has sub-classes: ProSight:Run Annotated Proteoform Search mode^c, ProSight:Run Subsequence Search mode^c, ProSight:Run delta m mode^c

technical replicate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001808

has super-classes: study variable attribute^c; has value type^op some xsd string^c

temperature array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000822

has super-classes: binary data array^c; has_units^op some u o 0000012^c

Temporal Qualifier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C21514

has super-classes: Qualifier^c
has sub-classes: Duration^c

TEMPUS TOF^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000196

has super-classes: Thermo Finnigan instrument model^c

ten percent valley^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000087

has super-classes: resolution measurement method^c

text format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001369

has super-classes: mass spectrometer file format^c

Th/s^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000807

has super-classes: u o 0000000

theoretical average m/z^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003054

has super-classes: peptidoform ion property^c

theoretical mass^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001117

has super-classes: peptide sequence-level identification attribute^c; has_units^op some u o 0000221^c; has value type^op some xsd double^c

theoretical monoisotopic m/z^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003053

has super-classes: peptidoform ion property^c

thermal ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000407

has super-classes: ionization type^c

Thermo Electron instrument model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000492

has super-classes: Thermo Fisher Scientific instrument model^c

Thermo Finnigan instrument model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000125

has super-classes: Thermo Fisher Scientific instrument model^c
has sub-classes: DELTA plusAdvantage^c, DELTAplusXP^c, DSQ^c, GC Quantum^c, LCQ Advantage^c, LCQ Classic^c, LCQ Deca^c, LCQ Deca XP Plus^c, LCQ Fleet^c, PolarisQ^c, Surveyor MSQ^c, TEMPUS TOF^c, TRACE DSQ^c, TRITON^c, TSQ Quantum^c, neptune^c

Thermo Finnigan software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000693

has super-classes: software^c
has sub-classes: Bioworks^c, PinPoint^c, Proteome Discoverer^c, Xcalibur^c

Thermo Fisher Scientific instrument model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000483

has super-classes: instrument model^c
has sub-classes: Finnigan MAT instrument model^c, Thermo Electron instrument model^c, Thermo Finnigan instrument model^c, Thermo Scientific instrument model^c

Thermo nativeID format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000768

has super-classes: native spectrum identifier format^c

Thermo nativeID format, combined spectra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002647

has super-classes: native spectrum identifier format, combined spectra^c; has value type^op some xsd string^c

Thermo RAW format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000563

has super-classes: mass spectrometer file format^c

Thermo Scientific instrument model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000494

has super-classes: Thermo Fisher Scientific instrument model^c
has sub-classes: Accela PDA^c, DFS^c, DSQ II^c, Element 2^c, Element GD^c, Element XR^c, Exactive^c, Exactive Plus^c, GC IsoLink^c, ISQ^c, ITQ 1100^c, ITQ 700^c, ITQ 900^c, LTQ^c, LTQ FT^c, LTQ FT Ultra^c, LTQ Orbitrap^c, LTQ Orbitrap Classic^c, LTQ Orbitrap Discovery^c, LTQ Orbitrap Elite^c, LTQ Orbitrap Velos^c, LTQ Orbitrap Velos Pro^c, LTQ Orbitrap XL^c, LTQ Orbitrap XL ETD^c, LTQ Velos^c, LTQ Velos ETD^c, LTQ XL^c, LTQ XL ETD^c, LXQ^c, MALDI LTQ Orbitrap^c, MALDI LTQ XL^c, Orbitrap Eclipse^c, Orbitrap Exploris 120^c, Orbitrap Exploris 240^c, Orbitrap Exploris 480^c, Orbitrap Fusion^c, Orbitrap Fusion ETD^c, Orbitrap Fusion Lumos^c, Orbitrap ID-X^c, Q Exactive^c, Q Exactive HF^c, Q Exactive HF-X^c, Q Exactive Plus^c, Q Exactive UHMR^c, Surveyor PDA^c, TSQ 8000 Evo^c, TSQ 9000^c, TSQ Altis^c, TSQ Endura^c, TSQ Quantis^c, TSQ Quantiva^c, TSQ Quantum Access^c, TSQ Quantum Ultra^c, TSQ Quantum Ultra AM^c, TSQ Vantage^c, Velos Plus^c

ThermoRawFileParser^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003145

has super-classes: data processing software^c

thermospray inlet^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000069

has super-classes: inlet type^c

three sample run^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001820

has super-classes: raw file attribute^c

TIC quarters RT fraction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000054

has super-classes: n-tuple^c; has_metric_category^op some ID free metric^c; has_metric_category^op some single run based metric^c; has_metric_category^op some retention time metric^c; has_metric_category^op some chromatogram metric^c; has_units^op some u o 0000191^c; has value type^op some xsd float^c

Tide^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002575

has super-classes: analysis software^c

time array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000595

has super-classes: binary data array^c; has_units^op some u o 0000010^c; has_units^op some u o 0000031^c

time lag focusing^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000286

has super-classes: ion optics type^c

time series, time point X^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001815

has super-classes: study variable attribute^c; has value type^op some xsd int^c

time unit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000550

This term was made obsolete because it was redundant with the Unit Ontology term time unit (UO:0000003).

time-delayed fragmentation spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000790

has super-classes: MSn spectrum^c

time-digital converter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000119

has super-classes: detector acquisition mode^c

time-of-flight^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000084

has super-classes: mass analyzer type^c

time-of-flight mass spectrometer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000287

This child of the former purgatory term mass spectrometer was made obsolete.

timsTOF^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003229

has super-classes: Bruker Daltonics timsTOF series^c

timsTOF fleX^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003124

has super-classes: Bruker Daltonics timsTOF series^c

timsTOF Pro^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003005

has super-classes: Bruker Daltonics timsTOF series^c

timsTOF Pro 2^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003230

has super-classes: Bruker Daltonics timsTOF series^c

timsTOF SCP^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003231

has super-classes: Bruker Daltonics timsTOF series^c

TIQAM^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000923

has super-classes: SRM software^c

TissueView Software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000664

has super-classes: SCIEX software^c; analysis software^c; data processing software^c

TMT quantitation analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002010

has super-classes: isobaric label quantitation analysis^c

TMT reagent^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002615

has super-classes: sample label^c
has sub-classes: TMT reagent 126^c, TMT reagent 127^c, TMT reagent 127C^c, TMT reagent 127N^c, TMT reagent 128^c, TMT reagent 128C^c, TMT reagent 128N^c, TMT reagent 129^c, TMT reagent 129C^c, TMT reagent 129N^c, TMT reagent 130^c, TMT reagent 130C^c, TMT reagent 130N^c, TMT reagent 131^c

TMT reagent 126^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002616

has super-classes: TMT reagent^c

TMT reagent 127^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002617

has super-classes: TMT reagent^c

TMT reagent 127C^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002764

has super-classes: TMT reagent^c

TMT reagent 127N^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002763

has super-classes: TMT reagent^c

TMT reagent 128^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002618

has super-classes: TMT reagent^c

TMT reagent 128C^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002766

has super-classes: TMT reagent^c

TMT reagent 128N^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002765

has super-classes: TMT reagent^c

TMT reagent 129^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002619

has super-classes: TMT reagent^c

TMT reagent 129C^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002768

has super-classes: TMT reagent^c

TMT reagent 129N^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002767

has super-classes: TMT reagent^c

TMT reagent 130^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002620

has super-classes: TMT reagent^c

TMT reagent 130C^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002770

has super-classes: TMT reagent^c

TMT reagent 130N^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002769

has super-classes: TMT reagent^c

TMT reagent 131^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002621

has super-classes: TMT reagent^c

TODOscoring model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001065

This term was made obsolete and is replaced by the term (MS:1001961).

has super-classes: search input details^c

TOF Total Path Length^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000022

has super-classes: mass analyzer attribute^c; has_units^op some u o 0000008^c; has value type^op some xsd float^c

TOFCalibration^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000766

has super-classes: TOPP software^c

tolerance on types^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001057

has super-classes: modification parameters^c

top 20 peak unassigned intensity fraction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003080

has super-classes: interpreted spectrum attribute^c

top hat baseline reduction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001994

has super-classes: baseline reduction^c

TopFD^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002902

has super-classes: analysis software^c

TopMG^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002903

has super-classes: analysis software^c

TopMG input parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002934

has super-classes: search engine specific input parameter^c
has sub-classes: TopMG:N-term form^c, TopMG:error tolerance^c, TopMG:fixed modification^c, TopMG:max shift^c, TopMG:mod file^c, TopMG:proteoform graph gap size^c, TopMG:proteoform-level cutoff type^c, TopMG:proteoform-level cutoff value^c, TopMG:spectral cutoff type^c, TopMG:spectral cutoff value^c, TopMG:thread number^c, TopMG:use ASF-DIAGONAL^c, TopMG:use TopFD feature^c, TopMG:variable PTM number^c, TopMG:variable PTM number in proteoform graph gap^c

TopMG:error tolerance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002937

has super-classes: TopMG input parameter^c; has value type^op some xsd integer^c

TopMG:fixed modification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002935

has super-classes: TopMG input parameter^c

TopMG:max shift^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002938

has super-classes: TopMG input parameter^c; has value type^op some xsd integer^c

TopMG:mod file^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002943

has super-classes: TopMG input parameter^c

TopMG:N-term form^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002936

has super-classes: TopMG input parameter^c

TopMG:proteoform graph gap size^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002946

has super-classes: TopMG input parameter^c; has value type^op some xsd integer^c

TopMG:proteoform-level cutoff type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002941

has super-classes: TopMG input parameter^c; has value type^op some xsd string^c

TopMG:proteoform-level cutoff value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002942

has super-classes: TopMG input parameter^c; has value type^op some xsd double^c

TopMG:proteoform-level FDR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002952

has super-classes: search engine specific score for proteoforms^c; proteoform-level local FDR^c; has value type^op some xsd double^c

TopMG:spectral cutoff type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002939

has super-classes: TopMG input parameter^c; has value type^op some xsd string^c

TopMG:spectral cutoff value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002940

has super-classes: TopMG input parameter^c; has value type^op some xsd double^c

TopMG:spectral E-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002950

has super-classes: PSM-level search engine specific statistic^c; PSM-level e-value^c; has_order^op some lower score better^c; has value type^op some xsd double^c

TopMG:spectral FDR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002951

has super-classes: PSM-level search engine specific statistic^c; PSM-level local FDR^c; has value type^op some xsd double^c

TopMG:spectral p-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002953

has super-classes: PSM-level search engine specific statistic^c; PSM-level p-value^c; has value type^op some xsd double^c

TopMG:thread number^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002944

has super-classes: TopMG input parameter^c; has value type^op some xsd integer^c

TopMG:use ASF-DIAGONAL^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002949

has super-classes: TopMG input parameter^c; has value type^op some xsd boolean^c

TopMG:use TopFD feature^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002945

has super-classes: TopMG input parameter^c; has value type^op some xsd boolean^c

TopMG:variable PTM number^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002947

has super-classes: TopMG input parameter^c; has value type^op some xsd integer^c

TopMG:variable PTM number in proteoform graph gap^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002948

has super-classes: TopMG input parameter^c; has value type^op some xsd integer^c

TOPP AdditiveSeries^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002162

has super-classes: TOPP software^c

TOPP CompNovo^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002178

has super-classes: TOPP software^c

TOPP CompNovoCID^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002179

has super-classes: TOPP software^c

TOPP ConsensusID^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002188

has super-classes: TOPP software^c

TOPP ConsensusMapNormalizer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002172

has super-classes: TOPP software^c

TOPP Decharger^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002163

has super-classes: TOPP software^c

TOPP DTAExtractor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002154

has super-classes: TOPP software^c

TOPP EICExtractor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002164

has super-classes: TOPP software^c

TOPP FalseDiscoveryRate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002204

has super-classes: TOPP software^c

TOPP feature finder^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002165

has super-classes: TOPP software^c
has sub-classes: TOPP FeatureFinderCentroided^c, TOPP FeatureFinderIsotopeWavelet^c, TOPP FeatureFinderMRM^c, TOPP FeatureFinderMetabo^c, TOPP FeatureFinderRaw^c

TOPP feature linker^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002174

has super-classes: TOPP software^c
has sub-classes: TOPP FeatureLinkerLabeled^c, TOPP FeatureLinkerUnlabeled^c, TOPP FeatureLinkerUnlabeledQT^c

TOPP FeatureFinderCentroided^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002166

has super-classes: TOPP feature finder^c

TOPP FeatureFinderIsotopeWavelet^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002168

has super-classes: TOPP feature finder^c

TOPP FeatureFinderMetabo^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002169

has super-classes: TOPP feature finder^c

TOPP FeatureFinderMRM^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002170

has super-classes: TOPP feature finder^c

TOPP FeatureFinderRaw^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002167

has super-classes: TOPP feature finder^c

TOPP FeatureLinkerLabeled^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002175

has super-classes: TOPP feature linker^c

TOPP FeatureLinkerUnlabeled^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002176

has super-classes: TOPP feature linker^c

TOPP FeatureLinkerUnlabeledQT^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002177

has super-classes: TOPP feature linker^c

TOPP HighResPrecursorMassCorrector^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002161

has super-classes: TOPP software^c

TOPP IDConflictResolver^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002189

has super-classes: TOPP software^c

TOPP IDFileConverter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002156

has super-classes: TOPP software^c

TOPP IDFilter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002190

has super-classes: TOPP software^c

TOPP IDMapper^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002191

has super-classes: TOPP software^c

TOPP IDMerger^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002155

has super-classes: TOPP software^c

TOPP IDPosteriorErrorProbability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002192

has super-classes: TOPP software^c

TOPP IDRTCalibration^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002193

has super-classes: TOPP software^c

TOPP InspectAdapter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002181

has super-classes: TOPP software adaptor^c

TOPP map aligner^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002147

has super-classes: TOPP software^c
has sub-classes: TOPP MapAlignerIdentification^c, TOPP MapAlignerPoseClustering^c, TOPP MapAlignerSpectrum^c

TOPP MapAlignerIdentification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002148

has super-classes: TOPP map aligner^c

TOPP MapAlignerPoseClustering^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002149

has super-classes: TOPP map aligner^c

TOPP MapAlignerSpectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002150

has super-classes: TOPP map aligner^c

TOPP MapRTTransformer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002173

has super-classes: TOPP software^c

TOPP MascotAdapter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002182

has super-classes: TOPP software adaptor^c

TOPP MascotAdapterOnline^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002183

has super-classes: TOPP software adaptor^c

TOPP MassTraceExtractor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002159

has super-classes: TOPP software^c

TOPP MRMMapper^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002196

has super-classes: TOPP software^c

TOPP MzTabExporter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002158

has super-classes: TOPP software^c

TOPP noise filter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002131

has super-classes: TOPP software^c
has sub-classes: TOPP NoiseFilterGaussian^c, TOPP NoiseFilterSGolay^c

TOPP NoiseFilterGaussian^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002132

has super-classes: TOPP noise filter^c

TOPP NoiseFilterSGolay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002133

has super-classes: TOPP noise filter^c

TOPP OMSSAAdapter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002184

has super-classes: TOPP software adaptor^c

TOPP OpenSwath component^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002197

has super-classes: TOPP software^c
has sub-classes: TOPP OpenSwathAnalyzer^c, TOPP OpenSwathChromatogramExtractor^c, TOPP OpenSwathDecoyGenerator^c, TOPP OpenSwathFeatureXMLToTSV^c, TOPP OpenSwathRTNormalizer^c

TOPP OpenSwathAnalyzer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002198

has super-classes: TOPP OpenSwath component^c

TOPP OpenSwathChromatogramExtractor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002199

has super-classes: TOPP OpenSwath component^c

TOPP OpenSwathDecoyGenerator^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002200

has super-classes: TOPP OpenSwath component^c

TOPP OpenSwathFeatureXMLToTSV^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002201

has super-classes: TOPP OpenSwath component^c

TOPP OpenSwathRTNormalizer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002202

has super-classes: TOPP OpenSwath component^c

TOPP peak picker^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002134

has super-classes: TOPP software^c
has sub-classes: TOPP PeakPickerHiRes^c, TOPP PeakPickerWavelet^c

TOPP PeakPickerHiRes^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002135

has super-classes: TOPP peak picker^c

TOPP PeakPickerWavelet^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002136

has super-classes: TOPP peak picker^c

TOPP PepNovoAdapter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002185

has super-classes: TOPP software adaptor^c

TOPP PeptideIndexer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002194

has super-classes: TOPP software^c

TOPP PrecursorIonSelector^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002195

has super-classes: TOPP software^c

TOPP PrecursorMassCorrector^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002160

has super-classes: TOPP software^c

TOPP ProteinInference^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002203

has super-classes: TOPP software^c

TOPP ProteinQuantifier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002171

has super-classes: TOPP software^c

TOPP software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000752

has super-classes: analysis software^c; data processing software^c
has sub-classes: BaselineFilter^c, DBExporter^c, DBImporter^c, EPIFANY^c, FileConverter^c, FileFilter^c, FileMerger^c, ITRAQAnalyzer^c, InternalCalibration^c, MapAligner^c, MapNormalizer^c, NoiseFilter^c, OpenPepXL^c, OpenXQuest^c, PeakPicker^c, Resampler^c, SILACAnalyzer^c, SpectraFilter^c, TOFCalibration^c, TOPP AdditiveSeries^c, TOPP CompNovo^c, TOPP CompNovoCID^c, TOPP ConsensusID^c, TOPP ConsensusMapNormalizer^c, TOPP DTAExtractor^c, TOPP Decharger^c, TOPP EICExtractor^c, TOPP FalseDiscoveryRate^c, TOPP HighResPrecursorMassCorrector^c, TOPP IDConflictResolver^c, TOPP IDFileConverter^c, TOPP IDFilter^c, TOPP IDMapper^c, TOPP IDMerger^c, TOPP IDPosteriorErrorProbability^c, TOPP IDRTCalibration^c, TOPP MRMMapper^c, TOPP MapRTTransformer^c, TOPP MassTraceExtractor^c, TOPP MzTabExporter^c, TOPP OpenSwath component^c, TOPP PeptideIndexer^c, TOPP PrecursorIonSelector^c, TOPP PrecursorMassCorrector^c, TOPP ProteinInference^c, TOPP ProteinQuantifier^c, TOPP SpecLibSearcher^c, TOPP SpectraMerger^c, TOPP feature finder^c, TOPP feature linker^c, TOPP map aligner^c, TOPP noise filter^c, TOPP peak picker^c, TOPP software adaptor^c, TOPP spectra filter^c

TOPP software adaptor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002180

has super-classes: TOPP software^c
has sub-classes: TOPP InspectAdapter^c, TOPP MascotAdapter^c, TOPP MascotAdapterOnline^c, TOPP OMSSAAdapter^c, TOPP PepNovoAdapter^c, TOPP XTandemAdapter^c

TOPP SpecLibSearcher^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002187

has super-classes: TOPP software^c

TOPP spectra filter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002137

has super-classes: TOPP software^c
has sub-classes: TOPP SpectraFilterBernNorm^c, TOPP SpectraFilterMarkerMower^c, TOPP SpectraFilterNLargest^c, TOPP SpectraFilterNormalizer^c, TOPP SpectraFilterParentPeakMower^c, TOPP SpectraFilterScaler^c, TOPP SpectraFilterSqrtMower^c, TOPP SpectraFilterThresholdMower^c, TOPP SpectraFilterWindowMower^c

TOPP SpectraFilterBernNorm^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002138

has super-classes: TOPP spectra filter^c

TOPP SpectraFilterMarkerMower^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002139

has super-classes: TOPP spectra filter^c

TOPP SpectraFilterNLargest^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002140

has super-classes: TOPP spectra filter^c

TOPP SpectraFilterNormalizer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002141

has super-classes: TOPP spectra filter^c

TOPP SpectraFilterParentPeakMower^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002142

has super-classes: TOPP spectra filter^c

TOPP SpectraFilterScaler^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002143

has super-classes: TOPP spectra filter^c

TOPP SpectraFilterSqrtMower^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002144

has super-classes: TOPP spectra filter^c

TOPP SpectraFilterThresholdMower^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002145

has super-classes: TOPP spectra filter^c

TOPP SpectraFilterWindowMower^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002146

has super-classes: TOPP spectra filter^c

TOPP SpectraMerger^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002157

has super-classes: TOPP software^c

TOPP XTandemAdapter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002186

has super-classes: TOPP software adaptor^c

TopPIC^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002901

has super-classes: analysis software^c

TopPIC input parameter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002912

has super-classes: search engine specific input parameter^c
has sub-classes: TopPIC:N-term form^c, TopPIC:combined spectrum number^c, TopPIC:error tolerance^c, TopPIC:fixed modification^c, TopPIC:generating function^c, TopPIC:max shift^c, TopPIC:min shift^c, TopPIC:mod file^c, TopPIC:proteoform-level cutoff type^c, TopPIC:proteoform-level cutoff value^c, TopPIC:shift num^c, TopPIC:spectral cutoff type^c, TopPIC:spectral cutoff value^c, TopPIC:thread number^c, TopPIC:use TopFD feature^c

TopPIC:combined spectrum number^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002924

has super-classes: TopPIC input parameter^c; has value type^op some xsd integer^c

TopPIC:error tolerance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002915

has super-classes: TopPIC input parameter^c; has value type^op some xsd integer^c

TopPIC:fixed modification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002913

has super-classes: TopPIC input parameter^c

TopPIC:generating function^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002923

has super-classes: TopPIC input parameter^c; has value type^op some xsd boolean^c

TopPIC:max shift^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002916

has super-classes: TopPIC input parameter^c; has value type^op some xsd integer^c

TopPIC:min shift^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002917

has super-classes: TopPIC input parameter^c; has value type^op some xsd integer^c

TopPIC:MIScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002932

has super-classes: PTM localization PSM-level statistic^c; has value type^op some xsd string^c

TopPIC:MIScore threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002933

has super-classes: PTM localization score threshold^c; has value type^op some xsd double^c

TopPIC:mod file^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002925

has super-classes: TopPIC input parameter^c

TopPIC:N-term form^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002914

has super-classes: TopPIC input parameter^c

TopPIC:proteoform-level cutoff type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002921

has super-classes: TopPIC input parameter^c; has value type^op some xsd string^c

TopPIC:proteoform-level cutoff value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002922

has super-classes: TopPIC input parameter^c; has value type^op some xsd double^c

TopPIC:proteoform-level FDR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002930

has super-classes: search engine specific score for proteoforms^c; proteoform-level local FDR^c; has value type^op some xsd double^c

TopPIC:shift num^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002918

has super-classes: TopPIC input parameter^c; has value type^op some xsd integer^c

TopPIC:spectral cutoff type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002919

has super-classes: TopPIC input parameter^c; has value type^op some xsd string^c

TopPIC:spectral cutoff value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002920

has super-classes: TopPIC input parameter^c; has value type^op some xsd double^c

TopPIC:spectral E-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002928

has super-classes: PSM-level search engine specific statistic^c; PSM-level e-value^c; has_order^op some lower score better^c; has value type^op some xsd double^c

TopPIC:spectral FDR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002929

has super-classes: PSM-level search engine specific statistic^c; PSM-level local FDR^c; has value type^op some xsd double^c

TopPIC:spectral p-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002931

has super-classes: PSM-level search engine specific statistic^c; PSM-level p-value^c; has value type^op some xsd double^c

TopPIC:thread number^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002926

has super-classes: TopPIC input parameter^c; has value type^op some xsd integer^c

TopPIC:use TopFD feature^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002927

has super-classes: TopPIC input parameter^c; has value type^op some xsd boolean^c

total ion current^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000285

has super-classes: spectrum property^c; has value type^op some xsd float^c

total ion current chromatogram^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000235

has super-classes: ion current chromatogram^c

total unassigned intensity fraction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003079

has super-classes: interpreted spectrum attribute^c

total XIC area^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002412

has super-classes: peptide-level quantification datatype^c; has value type^op some xsd double^c

TRACE DSQ^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000197

has super-classes: Thermo Finnigan instrument model^c

TraML format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002411

has super-classes: method file format^c

Tranche file hash^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001927

has super-classes: external reference identifier^c; has value type^op some xsd string^c

Tranche project hash^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001928

has super-classes: external reference identifier^c; has value type^op some xsd string^c

Trans-Proteomic Pipeline^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002285

has super-classes: analysis software^c

Trans-Proteomic Pipeline software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002286

has super-classes: analysis software^c; part_of^op some Trans-Proteomic Pipeline^c
has sub-classes: ASAPRatio^c, Libra^c, PTMProphet^c, PeptideProphet^c, ProteinProphet^c, XPRESS^c, iProphet^c

transient recorder^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000120

has super-classes: detector acquisition mode^c

transit peptide^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001022

has super-classes: PEFF molecule processing keyword^c; has regexp^op some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment^c; has value type^op some xsd string^c

transition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000908

has super-classes: part_of^op some spectrum generation information^c

transition optimized on specified instrument^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000910

has super-classes: transition validation method^c

transition predicted by informatic analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000913

has super-classes: transition validation method^c

transition purported from an MS/MS spectrum on a different, specified instrument^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000912

has super-classes: transition validation method^c

transition validated with an MS/MS spectrum on specified instrument^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000911

has super-classes: transition validation method^c

transition validation attribute^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001882

has super-classes: part_of^op some transition^c
has sub-classes: coefficient of variation^c, signal-to-noise ratio^c

transition validation method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000909

has super-classes: part_of^op some transition^c
has sub-classes: transition optimized on specified instrument^c, transition predicted by informatic analysis^c, transition purported from an MS/MS spectrum on a different, specified instrument^c, transition validated with an MS/MS spectrum on specified instrument^c

translation frame^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001024

has super-classes: search database details^c

translation start codons^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001410

has super-classes: search database details^c; has value type^op some xsd string^c

translation table^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001025

has super-classes: search database details^c; has value type^op some xsd string^c

translation table description^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001423

has super-classes: search database details^c; has value type^op some xsd any u r i^c

transmission^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000236

has super-classes: instrument attribute^c; has value type^op some xsd float^c

transmission quadrupole mass spectrometer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000303

This child of the former purgatory term mass spectrometer was made obsolete.

trap-type collision-induced dissociation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002472

has super-classes: collision-induced dissociation^c

Trapper^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000553

has super-classes: data processing software^c

travelling wave ion mobility mass spectrometer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001797

This child of the former purgatory term ion mobility spectrometry was made obsolete.

Triple Quad 3500^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002591

has super-classes: SCIEX instrument model^c

Triple Quad 4500^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002592

has super-classes: SCIEX instrument model^c

Triple Quad 5500^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002593

has super-classes: SCIEX instrument model^c

Triple Quad 6500^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002594

has super-classes: SCIEX instrument model^c

Triple Quad 6500+^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002595

has super-classes: SCIEX instrument model^c

Triple Quad 7500^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003144

has super-classes: SCIEX instrument model^c

TripleTOF 4600^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002583

has super-classes: SCIEX instrument model^c

TripleTOF 5600^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000932

has super-classes: SCIEX instrument model^c

TripleTOF 5600+^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002584

has super-classes: SCIEX instrument model^c

TripleTOF 6600^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002533

has super-classes: SCIEX instrument model^c

TRITON^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000198

has super-classes: Thermo Finnigan instrument model^c

TRIZAIC UPLC nanoTile^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001769

has super-classes: Waters instrument model^c

truncation and zlib compression^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003088

has super-classes: binary data compression type^c

truncation, delta prediction and zlib compression^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003089

has super-classes: binary data compression type^c

truncation, linear prediction and zlib compression^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003090

has super-classes: binary data compression type^c

TruTOF^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001804

has super-classes: LECO instrument model^c

TrypChymo^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001312

has super-classes: cleavage agent name^c; has regexp^op some (?<=[FYWLKR])(?!P)^c

Trypsin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001251

has super-classes: cleavage agent name^c; has regexp^op some (?<=[KR])(?!P)^c

Trypsin/P^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001313

has super-classes: cleavage agent name^c; has regexp^op some (?<=[KR])^c

TSQ^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000750

has super-classes: Finnigan MAT instrument model^c

TSQ 7000^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000749

has super-classes: Finnigan MAT instrument model^c

TSQ 8000 Evo^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002525

has super-classes: Thermo Scientific instrument model^c

TSQ 9000^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002876

has super-classes: Thermo Scientific instrument model^c

TSQ Altis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002874

has super-classes: Thermo Scientific instrument model^c

TSQ Endura^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002419

has super-classes: Thermo Scientific instrument model^c

TSQ Quantis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002875

has super-classes: Thermo Scientific instrument model^c

TSQ Quantiva^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002418

has super-classes: Thermo Scientific instrument model^c

TSQ Quantum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000199

has super-classes: Thermo Finnigan instrument model^c

TSQ Quantum Access^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000644

has super-classes: Thermo Scientific instrument model^c

TSQ Quantum Ultra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000751

has super-classes: Thermo Scientific instrument model^c

TSQ Quantum Ultra AM^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000743

has super-classes: Thermo Scientific instrument model^c

TSQ Vantage^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001510

has super-classes: Thermo Scientific instrument model^c

tube lens voltage^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000877

has super-classes: source attribute^c; has_units^op some u o 0000218^c; has value type^op some xsd float^c

two sample run^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001819

has super-classes: raw file attribute^c

two-dimensional gas chromatography with discrete modulation time steps^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002086

has super-classes: multidimensional chromatography modulation description^c

two-dimensional gas chromatography with fixed modulation time^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002085

has super-classes: multidimensional chromatography modulation description^c

two-dimensional liquid chromatography with discrete modulation time steps^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002088

has super-classes: multidimensional chromatography modulation description^c

two-dimensional liquid chromatography with fixed modulation time^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002087

has super-classes: multidimensional chromatography modulation description^c

UIMF format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002531

has super-classes: mass spectrometer file format^c

UIMF nativeID format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002532

has super-classes: native spectrum identifier format^c

ultima^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000200

has super-classes: IonSpec instrument model^c

ultraflex^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000201

has super-classes: Bruker Daltonics flex series^c

ultraflex III TOF/TOF^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000705

has super-classes: Bruker Daltonics flex series^c

ultraflex TOF/TOF^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000202

has super-classes: Bruker Daltonics flex series^c

ultrafleXtreme^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001544

has super-classes: Bruker Daltonics flex series^c

ultraviolet photodissociation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003246

has super-classes: photodissociation^c

UltroTOF-Q^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001539

has super-classes: Bruker Daltonics BioTOF series^c

unidentified modification monoisotopic mass delta^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003081

has super-classes: peptide modification details^c; has_units^op some u o 0000221^c; has value type^op some xsd double^c

unified atomic mass unit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000237

This term was made obsolete because it was redundant with Unit Ontology dalton (UO:0000221).

UNIFY^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001796

has super-classes: Waters software^c; analysis software^c; data processing software^c

unimolecular dissociation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000440

This child of the former purgatory term ion reaction was made obsolete.

uninterpreted spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003076

has super-classes: spectrum^c

UniProtKB text sequence format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002659

has super-classes: database file formats^c

UniProtKB XML sequence format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002660

has super-classes: database file formats^c

unit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000460

This term was made obsolete because it was redundant with the Unit Ontology term unit (UO:0000000).

has super-classes: part_of^op some spectrum generation information^c

universal spectrum identifier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003063

has super-classes: spectrum attribute^c

unknown modification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001460

has super-classes: peptide modification details^c

unlabeled peptidoform^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000892

has super-classes: peptidoform labeling state^c

unmapped peptide^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002740

has super-classes: proteogenomics attribute^c

unmapped protein^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002741

has super-classes: proteogenomics attribute^c

unnatural peptidoform decoy spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003195

has super-classes: decoy spectrum^c

unrelated species decoy spectrum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003196

has super-classes: decoy spectrum^c

unspecific cleavage^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001956

has super-classes: cleavage agent name^c

unstable ion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000379

This child of the former purgatory term ion stability type was made obsolete.

Unsupported dataset by repository^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002857

has super-classes: Experiment additional parameter^c

V8-DE^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001314

has super-classes: cleavage agent name^c; has regexp^op some (?<=[BDEZ])(?!P)^c

V8-E^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001315

has super-classes: cleavage agent name^c; has regexp^op some (?<=[EZ])(?!P)^c

vacuum drying MALDI sample preparation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001987

has super-classes: matrix application type^c

value between 0 and 1 inclusive^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002305

has super-classes: domain range^c

value between 0 and 1000 inclusive^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002753

has super-classes: domain range^c

value greater than zero^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002306

has super-classes: domain range^c

value greater than zero but less than or equal to one^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002349

has super-classes: domain range^c

Variable modification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003022

has super-classes: modification parameters^c; named element in mzIdentML^c

Varian instrument model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000489

has super-classes: instrument model^c
has sub-classes: IonSpec instrument model^c

Variance stabilizing normalization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002211

has super-classes: quantification data processing^c

Variant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001011

This term was made obsolete in favor of VariantSimple and VariantComplex.

has super-classes: PEFF file sequence entry term^c; has regexp^op some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment^c; has value type^op some xsd string^c

VariantComplex^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001029

has super-classes: PEFF file sequence entry term^c; has regexp^op some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment^c; has value type^op some xsd string^c

VariantSimple^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001028

has super-classes: PEFF file sequence entry term^c; has regexp^op some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment^c; has value type^op some xsd string^c

variation coefficient^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002963

has super-classes: study variable variation function^c

Velos Plus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001909

has super-classes: Thermo Scientific instrument model^c

vendor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000030

This term was made obsolete because it was replaced by instrument model (MS:1000031).

vertical ionization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000408

has super-classes: ionization type^c

Vion IMS QTof^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002728

has super-classes: Waters instrument model^c

volt-second per square centimeter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002814

has super-classes: u o 0000000

Voyager Biospectrometry Workstation System^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000539

has super-classes: Applied Biosystems software^c; acquisition software^c; analysis software^c; data processing software^c

Voyager-DE PRO^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000203

has super-classes: Applied Biosystems instrument model^c

Voyager-DE STR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000204

has super-classes: Applied Biosystems instrument model^c

WARP-LC^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000739

has super-classes: Bruker software^c; quantitation software name^c

Waters instrument model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000126

has super-classes: instrument model^c
has sub-classes: 3100^c, ACQUITY UPLC^c, ACQUITY UPLC H-Class^c, ACQUITY UPLC H-Class Bio^c, ACQUITY UPLC I-Class^c, ACQUITY UPLC Systems with 2D Technology^c, Acquity SQD^c, Acquity TQD^c, Acquity UPLC FLR^c, Acquity UPLC PDA^c, Auto Spec Ultima NT^c, AutoSpec Premier^c, GCT^c, GCT Premier^c, IsoPrime^c, IsoProbe^c, IsoProbe T^c, M@LDI L^c, M@LDI LR^c, MALDI SYNAPT G2-Si^c, MALDI Synapt G2 HDMS^c, MALDI Synapt G2 MS^c, MALDI Synapt G2-S HDMS^c, MALDI Synapt G2-S MS^c, MALDI Synapt HDMS^c, MALDI Synapt MS^c, NG-5400^c, Platform ICP^c, Q-Tof Premier^c, Q-Tof Ultima^c, Q-Tof micro^c, Quattro Ultima^c, Quattro micro GC^c, SELECT SERIES Cyclic IMS^c, SELECT SERIES MRT^c, SQ Detector 2^c, SYNAPT G2-Si^c, Synapt G2 HDMS^c, Synapt G2 MS^c, Synapt G2-S HDMS^c, Synapt G2-S MS^c, Synapt HDMS^c, Synapt MS^c, Synapt XS^c, TRIZAIC UPLC nanoTile^c, Vion IMS QTof^c, Xevo G2 Q-Tof^c, Xevo G2 Tof^c, Xevo G2-S QTof^c, Xevo G2-S Tof^c, Xevo G2-XS QTof^c, Xevo G2-XS Tof^c, Xevo Q-Tof^c, Xevo TQ MS^c, Xevo TQ-S^c, Xevo TQ-S micro^c, Xevo TQ-XS^c, Xevo TQD^c, nanoACQUITY UPLC^c, nanoACQUITY UPLC System with 1D Technology^c, nanoACQUITY UPLC with HDX Technology^c, quattro micro^c

Waters nativeID format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000769

has super-classes: native spectrum identifier format^c

Waters nativeID format, combined spectra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002648

has super-classes: native spectrum identifier format, combined spectra^c; has value type^op some xsd string^c

Waters raw format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000526

has super-classes: mass spectrometer file format^c

Waters software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000694

has super-classes: software^c
has sub-classes: Empower^c, MassLynx^c, ProteinLynx Global Server^c, UNIFY^c

wavelength^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000843

This term was made obsolete because it was redundant with the Pato Ontology term wavelength (UO:0001242).

has super-classes: laser attribute^c; has_units^op some u o 0000018^c; has value type^op some xsd float^c

wavelength array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000617

has super-classes: binary data array^c; has_units^op some u o 0000018^c

wavelet transformation smoothing^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001997

has super-classes: smoothing^c

WIFF nativeID format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000770

has super-classes: native spectrum identifier format^c

WIFF nativeID format, combined spectra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002649

has super-classes: native spectrum identifier format, combined spectra^c; has value type^op some xsd string^c

X!Tandem^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001476

has super-classes: analysis software^c

X!Tandem xml format^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001401

has super-classes: intermediate analysis format^c

X!Tandem:expect^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001330

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

X!Tandem:hyperscore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001331

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

x-Tracker^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002123

has super-classes: quantitation software name^c

X500R QTOF^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002674

has super-classes: SCIEX instrument model^c

Xcalibur^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000532

has super-classes: Thermo Finnigan software^c; acquisition software^c; analysis software^c; data processing software^c

XCMS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001582

has super-classes: analysis software^c; data processing software^c

XCMS:area^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002832

has super-classes: feature-level quantification datatype^c; has value type^op some xsd double^c

XCMS:intf^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002830

has super-classes: feature-level quantification datatype^c; has value type^op some xsd double^c

XCMS:into^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002829

has super-classes: feature-level quantification datatype^c; has value type^op some xsd double^c

XCMS:maxo^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002831

has super-classes: feature-level quantification datatype^c; has value type^op some xsd double^c

Xevo G2 Q-Tof^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001783

has super-classes: Waters instrument model^c

Xevo G2 Tof^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001784

has super-classes: Waters instrument model^c

Xevo G2-S QTof^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002276

has super-classes: Waters instrument model^c

Xevo G2-S Tof^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002275

has super-classes: Waters instrument model^c

Xevo G2-XS QTof^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003252

has super-classes: Waters instrument model^c

Xevo G2-XS Tof^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002729

has super-classes: Waters instrument model^c

Xevo Q-Tof^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001785

has super-classes: Waters instrument model^c

Xevo TQ MS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001790

has super-classes: Waters instrument model^c

Xevo TQ-S^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001792

has super-classes: Waters instrument model^c

Xevo TQ-S micro^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002731

has super-classes: Waters instrument model^c

Xevo TQ-XS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002730

has super-classes: Waters instrument model^c

Xevo TQD^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001791

has super-classes: Waters instrument model^c

xi^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002544

has super-classes: analysis software^c

xi:score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002545

has super-classes: PSM-level search engine specific statistic^c; has_order^op some higher score better^c; has value type^op some xsd double^c

XIC area^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001858

has super-classes: quantification datatype^c; has value type^op some xsd double^c

XIC metric^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000018

has super-classes: chromatogram metric^c

XIC-FWHM quantiles^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000051

has super-classes: n-tuple^c; has_metric_category^op some ID free metric^c; has_metric_category^op some single run based metric^c; has_metric_category^op some XIC metric^c; has_units^op some u o 0000010^c; has_value_concept^op some full width at half-maximum^c; has_value_concept^op some s t a t o 0000291^c; has value type^op some xsd float^c

XIC-Height quartile ratios^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000052

has super-classes: n-tuple^c; has_metric_category^op some ID free metric^c; has_metric_category^op some single run based metric^c; has_metric_category^op some XIC metric^c; has_value_concept^op some s t a t o 0000105^c; has_value_concept^op some u o 0000191^c; has value type^op some xsd float^c

XIC50 fraction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_4000050

This metric characterises the distribution of precursor peak widths, much as the N50 characterises contig sizes in genome assembly.

has super-classes: single value^c; has_metric_category^op some ID free metric^c; has_metric_category^op some single run based metric^c; has_value_concept^op some u o 0000191^c; has value type^op some xsd float^c

xiFDR^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002543

has super-classes: analysis software^c

XPRESS^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002290

has super-classes: Trans-Proteomic Pipeline software^c

XRef^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001019

has super-classes: PEFF file sequence entry term^c; has value type^op some xsd string^c

ZCore:probScore^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001952

has super-classes: PSM-level search engine specific statistic^c; has value type^op some xsd double^c

zlib compression^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000574

has super-classes: binary data compression type^c

zoom scan^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000497

has super-classes: scan attribute^c

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni .

Abstract

Table of Content

Classes

((?<=D))|((?=D))c back to ToC or Class ToC

(?<=[^E]E)c back to ToC or Class ToC

(?<=[ALIV])(?c back to ToC or Class ToC

(?<=[BDEZ])(?!P)c back to ToC or Class ToC

(?<=[EZ])(?!P)c back to ToC or Class ToC

(?<=[FL])c back to ToC or Class ToC

(?<=[FYWL])(?!P)c back to ToC or Class ToC

(?<=[FYWLKR])(?!P)c back to ToC or Class ToC

(?<=[HKR]P)(?c back to ToC or Class ToC

(?<=[KR])c back to ToC or Class ToC

(?<=[KR])(?!P)c back to ToC or Class ToC

(?<=K)c back to ToC or Class ToC

(?<=K)(?!P)c back to ToC or Class ToC

(?<=M)c back to ToC or Class ToC

(?<=R)(?!P)c back to ToC or Class ToC

(?<=W)c back to ToC or Class ToC

(?=[BD])c back to ToC or Class ToC

(?=[DE])c back to ToC or Class ToC

(?=[KR])c back to ToC or Class ToC

1200 series LC/MSD SLc back to ToC or Class ToC

1200 series LC/MSD VLc back to ToC or Class ToC

16-bit floatc back to ToC or Class ToC

2-iodobenzoatec back to ToC or Class ToC

2000 QTRAPc back to ToC or Class ToC

2500 QTRAPc back to ToC or Class ToC

2E Mass Spectrumc back to ToC or Class ToC

3100c back to ToC or Class ToC

32-bit floatc back to ToC or Class ToC

32-bit integerc back to ToC or Class ToC

3200 QTRAPc back to ToC or Class ToC

3500 QTRAPc back to ToC or Class ToC

4000 QTRAPc back to ToC or Class ToC

4000 QTRAPc back to ToC or Class ToC

4000 Series Explorer Softwarec back to ToC or Class ToC

4700 Explorerc back to ToC or Class ToC

4700 Proteomics Analyzerc back to ToC or Class ToC

4800 Plus MALDI TOF/TOFc back to ToC or Class ToC

4800 Proteomics Analyzerc back to ToC or Class ToC

5800 TOF/TOFc back to ToC or Class ToC

6110 Quadrupole LC/MSc back to ToC or Class ToC

6120A Quadrupole LC/MSc back to ToC or Class ToC

6120B Quadrupole LC/MSc back to ToC or Class ToC

6130 Quadrupole LC/MSc back to ToC or Class ToC

6140 Quadrupole LC/MSc back to ToC or Class ToC

6150 Quadrupole LC/MSc back to ToC or Class ToC

6210 Time-of-Flight LC/MSc back to ToC or Class ToC

6220 Time-of-Flight LC/MSc back to ToC or Class ToC

6224 Time-of-Flight LC/MSc back to ToC or Class ToC

6230A Time-of-Flight LC/MSc back to ToC or Class ToC

6230B Time-of-Flight LC/MSc back to ToC or Class ToC

6300 Series Ion Trap Data Analysis Softwarec back to ToC or Class ToC

6310 Ion Trap LC/MSc back to ToC or Class ToC

6320 Ion Trap LC/MSc back to ToC or Class ToC

6330 Ion Trap LC/MSc back to ToC or Class ToC

6340 Ion Trap LC/MSc back to ToC or Class ToC

64-bit floatc back to ToC or Class ToC

64-bit integerc back to ToC or Class ToC

6410 Triple Quadrupole LC/MSc back to ToC or Class ToC

6420 Triple Quadrupole LC/MSc back to ToC or Class ToC

6430 Triple Quadrupole LC/MSc back to ToC or Class ToC

6460 Triple Quadrupole LC/MSc back to ToC or Class ToC

6470A Triple Quadrupole LC/MSc back to ToC or Class ToC

6470B Triple Quadrupole LC/MSc back to ToC or Class ToC

6490 Triple Quadrupole LC/MSc back to ToC or Class ToC

6495A Triple Quadrupole LC/MSc back to ToC or Class ToC

6495B Triple Quadrupole LC/MSc back to ToC or Class ToC

6495C Triple Quadrupole LC/MSc back to ToC or Class ToC

6510 Quadrupole Time-of-Flight LC/MSc back to ToC or Class ToC

6520A Quadrupole Time-of-Flight LC/MSc back to ToC or Class ToC

6520B Q-TOF LC/MSc back to ToC or Class ToC

6530A Q-TOF LC/MSc back to ToC or Class ToC

6530B Q-TOF LC/MSc back to ToC or Class ToC

6538 Q-TOF LC/MSc back to ToC or Class ToC

6540 Q-TOF LC/MSc back to ToC or Class ToC

6542 Q-TOF LC/MSc back to ToC or Class ToC

6545 Q-TOF LC/MSc back to ToC or Class ToC

6550 iFunnel Q-TOF LC/MSc back to ToC or Class ToC

((?<=D))|((?=D))^c back to ToC or Class ToC

(?<=[^E]E)^c back to ToC or Class ToC

(?<=[ALIV])(?^c back to ToC or Class ToC

(?<=[BDEZ])(?!P)^c back to ToC or Class ToC

(?<=[EZ])(?!P)^c back to ToC or Class ToC

(?<=[FL])^c back to ToC or Class ToC

(?<=[FYWL])(?!P)^c back to ToC or Class ToC

(?<=[FYWLKR])(?!P)^c back to ToC or Class ToC

(?<=[HKR]P)(?^c back to ToC or Class ToC

(?<=[KR])^c back to ToC or Class ToC

(?<=[KR])(?!P)^c back to ToC or Class ToC

(?<=K)^c back to ToC or Class ToC

(?<=K)(?!P)^c back to ToC or Class ToC

(?<=M)^c back to ToC or Class ToC

(?<=R)(?!P)^c back to ToC or Class ToC

(?<=W)^c back to ToC or Class ToC

(?=[BD])^c back to ToC or Class ToC

(?=[DE])^c back to ToC or Class ToC

(?=[KR])^c back to ToC or Class ToC

1200 series LC/MSD SL^c back to ToC or Class ToC

1200 series LC/MSD VL^c back to ToC or Class ToC

16-bit float^c back to ToC or Class ToC

2-iodobenzoate^c back to ToC or Class ToC

2000 QTRAP^c back to ToC or Class ToC

2500 QTRAP^c back to ToC or Class ToC

2E Mass Spectrum^c back to ToC or Class ToC

3100^c back to ToC or Class ToC

32-bit float^c back to ToC or Class ToC

32-bit integer^c back to ToC or Class ToC

3200 QTRAP^c back to ToC or Class ToC

3500 QTRAP^c back to ToC or Class ToC

4000 QTRAP^c back to ToC or Class ToC

4000 QTRAP^c back to ToC or Class ToC

4000 Series Explorer Software^c back to ToC or Class ToC

4700 Explorer^c back to ToC or Class ToC

4700 Proteomics Analyzer^c back to ToC or Class ToC

4800 Plus MALDI TOF/TOF^c back to ToC or Class ToC

4800 Proteomics Analyzer^c back to ToC or Class ToC

5800 TOF/TOF^c back to ToC or Class ToC

6110 Quadrupole LC/MS^c back to ToC or Class ToC

6120A Quadrupole LC/MS^c back to ToC or Class ToC

6120B Quadrupole LC/MS^c back to ToC or Class ToC

6130 Quadrupole LC/MS^c back to ToC or Class ToC

6140 Quadrupole LC/MS^c back to ToC or Class ToC

6150 Quadrupole LC/MS^c back to ToC or Class ToC

6210 Time-of-Flight LC/MS^c back to ToC or Class ToC

6220 Time-of-Flight LC/MS^c back to ToC or Class ToC

6224 Time-of-Flight LC/MS^c back to ToC or Class ToC

6230A Time-of-Flight LC/MS^c back to ToC or Class ToC

6230B Time-of-Flight LC/MS^c back to ToC or Class ToC

6300 Series Ion Trap Data Analysis Software^c back to ToC or Class ToC

6310 Ion Trap LC/MS^c back to ToC or Class ToC

6320 Ion Trap LC/MS^c back to ToC or Class ToC

6330 Ion Trap LC/MS^c back to ToC or Class ToC

6340 Ion Trap LC/MS^c back to ToC or Class ToC

64-bit float^c back to ToC or Class ToC

64-bit integer^c back to ToC or Class ToC

6410 Triple Quadrupole LC/MS^c back to ToC or Class ToC

6420 Triple Quadrupole LC/MS^c back to ToC or Class ToC

6430 Triple Quadrupole LC/MS^c back to ToC or Class ToC

6460 Triple Quadrupole LC/MS^c back to ToC or Class ToC

6470A Triple Quadrupole LC/MS^c back to ToC or Class ToC

6470B Triple Quadrupole LC/MS^c back to ToC or Class ToC

6490 Triple Quadrupole LC/MS^c back to ToC or Class ToC

6495A Triple Quadrupole LC/MS^c back to ToC or Class ToC

6495B Triple Quadrupole LC/MS^c back to ToC or Class ToC

6495C Triple Quadrupole LC/MS^c back to ToC or Class ToC

6510 Quadrupole Time-of-Flight LC/MS^c back to ToC or Class ToC

6520A Quadrupole Time-of-Flight LC/MS^c back to ToC or Class ToC

6520B Q-TOF LC/MS^c back to ToC or Class ToC

6530A Q-TOF LC/MS^c back to ToC or Class ToC

6530B Q-TOF LC/MS^c back to ToC or Class ToC

6538 Q-TOF LC/MS^c back to ToC or Class ToC

6540 Q-TOF LC/MS^c back to ToC or Class ToC

6542 Q-TOF LC/MS^c back to ToC or Class ToC

6545 Q-TOF LC/MS^c back to ToC or Class ToC

6550 iFunnel Q-TOF LC/MS^c back to ToC or Class ToC

6550A iFunnel Q-TOF LC/MS^c back to ToC or Class ToC

6560 Q-TOF LC/MS^c back to ToC or Class ToC

6570 Q-TOF LC/MS^c back to ToC or Class ToC