Ontology for BIoBanking (OBIB)

IRI:
http://purl.obolibrary.org/obo/obib.owl
Version IRI:
http://purl.obolibrary.org/obo/obib/2021-02-02/obib.owl
Current version:
development version
Contributors:
Alice Nzinga
Chris Stoeckert
Jan-Eric Litton
Jie Zheng
Loreana Norlin
Maria Anderberg
Martin N. Fransson
Mathias Brochhausen
Mikael Eriksson
Roxana Merino-Martinez
Sanela Kjellqvist
William R. Hogan
Other visualisation:
Ontology source

Table of Content

  1. Introduction
  2. Classes
  3. Object Properties
  4. Data Properties
  5. Named Individuals
  6. Annotation Properties
  7. Namespace Declarations

Introduction

The Ontology for Biobanking (OBIB) is an ontology for the annotation and modeling of the activities, contents, and administration of a biobank. Biobanks are facilities that store specimens, such as bodily fluids and tissues, typically along with specimen annotation and clinical data. OBIB is based on a subset of the Ontology for Biomedical Investigation (OBI), has the Basic Formal Ontology (BFO) as its upper ontology, and is developed following OBO Foundry principles. The first version of OBIB resulted from the merging of two existing biobank-related ontologies, OMIABIS and biobank ontology.

Classes

3-D extentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001710

has super-classes
sizec
has sub-classes
volumec

a clinical history of contact with someone with smallpoxc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000556

has super-classes
clinical historyc

abdominal surgical methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000166

has super-classes
surgical methodc

abdominal wall fat pad biopsyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002660

has super-classes
biopsyc
has_specified_inputop some omental fat padc

abdominoperineal resectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000118

has super-classes
surgical procedurec

act of authorizingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000046

has super-classes
planned processc
has sub-classes
research authorization for post mortem specimen donationc

action specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000007

has super-classes
directive information entityc

activity related to a particular specimen donor was stopped because not enough blood collectedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000452

has super-classes
activity related to a particular specimen donor was stopped.c

activity related to a particular specimen donor was stopped because not enough tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000453

has super-classes
activity related to a particular specimen donor was stopped.c

activity related to a particular specimen donor was stopped because tissue was benignc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000455

has super-classes
activity related to a particular specimen donor was stopped.c

activity related to a particular specimen donor was stopped because tissue was not released to a biobankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000456

has super-classes
activity related to a particular specimen donor was stopped.c

activity related to a particular specimen donor was stopped because tissue was too necroticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000454

has super-classes
activity related to a particular specimen donor was stopped.c

activity related to a particular specimen donor was stopped.c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000451

has super-classes
information content entityc
has sub-classes
activity related to a particular specimen donor was stopped because not enough blood collectedc, activity related to a particular specimen donor was stopped because not enough tissuec, activity related to a particular specimen donor was stopped because tissue was benignc, activity related to a particular specimen donor was stopped because tissue was not released to a biobankc, activity related to a particular specimen donor was stopped because tissue was too necroticc

adding a material entity into a targetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000274

is equivalent to
achieves_planned_objectiveop some adding material objectivec
has super-classes
material combinationc
realizesop some material to be added rolec
has_specified_outputop some material entityc and (has roleop some material to be added rolec) and (located inop some material entityc and (has roleop some target of material addition rolec))
realizesop some target of material addition rolec
has sub-classes
adding specimen into a containerc

adding material objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000434

has super-classes
material combination objectivec

adding specimen into a containerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000034

has super-classes
adding a material entity into a targetc
has_specified_outputop some specimenc and (has roleop some material to be added rolec) and (located inop some containerc and (has roleop some target of material addition rolec))
has sub-classes
blood spottingc

addition of molecular labelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600038

has super-classes
material processingc
achieves_planned_objectiveop some material transformation objectivec
has_specified_outputop some molecular-labeled materialc
has_specified_inputop some molecular labelc
has_specified_inputop some target of material additionc

additional tumor specimen was obtained and processed with a particular FFPE fixation delay protocolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000445

has super-classes
information content entityc

adenosquamous colon carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_5629

has super-classes
colon carcinomac

adherence of alcohol stage duration to FFPE tissue processing SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000292

has super-classes
information content entityc

adherence of dehydration process duration to FFPE tissue processing SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000294

has super-classes
information content entityc

adherence of dehydration process temperature to FFPE tissue processing SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000296

has super-classes
information content entityc

adherence of duration in clearing agent to FFPE tissue processing SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000300

has super-classes
information content entityc

adherence of paraffin temperature to FFPE tissue processing SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000306

has super-classes
information content entityc

adherence of stage and replicate numbers to FFPE tissue processing SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000298

has super-classes
information content entityc

adherence of temperature of clearing agent to FFPE tissue processing SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000302

has super-classes
information content entityc

adherence to FFPE tissue block storage SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000315

has super-classes
information content entityc

adherence to paraffin impregnation method in FFPE tissue processing SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000304

has super-classes
information content entityc

adipose tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001013

has super-classes
tissuec
has sub-classes
omental fat padc

adipose tissue specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002530

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some adipose tissuec))
has super-classes
specimen from organismc

Adjuvant Therapyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C15675

has super-classes
Cancer Therapeutic Procedurec

administration of anaestheticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000112

has super-classes
planned processc

administration of antimicrobial agent during surgeryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000115

has super-classes
planned processc

administration of inhalation anaestheticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000111

has super-classes
planned processc

administration of insulin during surgeryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000113

has super-classes
planned processc

administration of intravenous anaestheticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000108

has super-classes
planned processc

administration of local anaestheticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000106

has super-classes
planned processc

administration of medication during surgeryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000116

has super-classes
planned processc

administration of regional anaestheticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000107

has super-classes
planned processc

administration of steroid during surgeryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000114

has super-classes
planned processc

adrenal glandc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002369

has super-classes
material anatomical entityc
has sub-classes
left adrenal glandc, right adrenal glandc

adrenal gland specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002522

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some adrenal glandc))
has super-classes
specimen from organismc

Africanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ERO_0001983

has super-classes
ethnic groupc

agar stab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000981

is equivalent to
is_specified_output_ofop some agar stab storagec and (has_specified_inputop some has roleop some specimen rolec)
has super-classes
specimen with known storage statec

agar stab storagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001003

need to specify that agar is one of input for this process
has super-classes
storagec
has_specified_inputop some cultured cell populationc
achieves_planned_objectiveop some material maintenance objectivec

agec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000011

has super-classes
timec
has sub-classes
microtome blade agec

age data by age bracketsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000085

has super-classes
data setc
data setc and (has partop some measurement datumc and (is aboutop some one-dimensional temporal regionc and (has temporal occupantop exactly 1 historyc)))

age group inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002555

has super-classes
inclusion criterionc
(has partop some minimum age value specificationc) and (has partop some maximum age value specificationc)

age interval informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001000

Example: age interval is 18-65
has super-classes
information content entityc
information content entityc and (is aboutop some (part ofop some data setc) and (is aboutop some one-dimensional temporal regionc and (has temporal occupantop exactly 1 historyc)))
has sub-classes
age interval information for sampled donorsc

age interval information for sampled donorsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001029

has super-classes
age interval informationc
information content entityc and (is aboutop some part ofop some data setc and (is aboutop some one-dimensional temporal regionc and (has temporal occupantop exactly 1 )))

age measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001167

has super-classes
time measurement datumc
is quality measurement ofop some agec
has sub-classes
age of specimen donor at time that authorization from legally authorized representative was obtainedc, age since birth measurement datumc, age since coitus measurement datumc, age since culture seeding measurement datumc, age since eclosion measurement datumc, age since egg laying measurement datumc, age since fertilization measurement datumc, age since germination measurement datumc, age since hatching measurement datumc, age since planting measurement datumc, age since sowing measurement datumc, age when gave birth to first childc

age of majority inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002423

has super-classes
inclusion criterionc

age of paraffinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000312

has super-classes
scalar measurement datumc

age of specimen donor at time that authorization from legally authorized representative was obtainedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000485

has super-classes
age measurement datumc

age since birth measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001169

has super-classes
age measurement datumc

age since coitus measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001165

has super-classes
age measurement datumc

age since culture seeding measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002465

has super-classes
age measurement datumc

age since eclosion measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001163

has super-classes
age measurement datumc

age since egg laying measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001159

has super-classes
age measurement datumc

age since fertilization measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001168

has super-classes
age measurement datumc

age since germination measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001161

has super-classes
age measurement datumc

age since hatching measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001157

has super-classes
age measurement datumc

age since planting measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001156

has super-classes
age measurement datumc

age since sowing measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001164

has super-classes
age measurement datumc

age when gave birth to first childc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002396

has super-classes
age measurement datumc

aggregate of organizationsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000033

It is often convenient to group organizations together that otherwise might not even interact with one another.
is equivalent to
(not (organizationc)) and (has memberop only organizationc) and (has memberop min 2 organizationc)
has super-classes
material entityc

agreement to a specified research addendumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000489

has super-classes
obsolete authorization documentc

albumin volume administered intraoperativelyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000138

has super-classes
measurement datumc

alcoholc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_30879

has super-classes
molecular entityc
has sub-classes
ethanolc

Alcohol Use Historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C81229

has super-classes
information content entityc
has sub-classes
current non-drinker of alcoholc, greater than moderate alcohol consumption historyc, lifelong non-drinker of alcoholc, moderate alcohol consumption historyc

algorithmc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000064

has super-classes
plan specificationc

alivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001421

has super-classes
viabilityc

all requirements for an investigation are met enabling release of specimen for shipment.c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000450

has super-classes
information content entityc

Amniotac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32524

has super-classes
Tetrapodac
has sub-classes
Mammaliac

amniotic fluidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000173

has super-classes
organism substancec

amniotic fluid specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002500

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some amniotic fluidc))
has super-classes
specimen from organismc

amount of fresh frozen plasma administered intraoperativelyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000141

has super-classes
countc

amount of packed red blood cells administered intraoperativelyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000139

has super-classes
countc

an indication of illegal injectable drug usec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000572

has super-classes
information content entityc

anaestheticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_38867

has super-classes
medication rolec
has sub-classes
inhalation anaestheticc, intravenous anaestheticc, local anaestheticc

analysis subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000008

has super-classes
subset ontology modulec

analyte assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000443

has super-classes
assayc
achieves_planned_objectiveop some analyte measurement objectivec
has_specified_outputop some measurement datumc
has sub-classes
HBV surface antigen assayc, HCV nucleic acid testingc, HIV-1 nucleic acid testingc, antigen specific antibodies assayc, rapid plasma reagin testc, venereal disease research laboratory testc

analyte measurement objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000437

has super-classes
assay objectivec

analyte rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000275

has super-classes
measurand rolec
role ofop some molecular entityc or atomc

anatomical clusterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000477

has super-classes
material entityc
has sub-classes
cerebral cortexc, tibial nervec

Anatomical locationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FMA_50707

has super-classes
immaterial entityc
has sub-classes
Location adjacent to tissue fixationc, Location below resectionc

anesthesia probe temperature measurement assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000067

has super-classes
internal body temperature measurement assayc

anesthesiologist rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000226

has super-classes
health care provider rolec

antacidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_65265

has super-classes
medication rolec

Anterior wall of vaginac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FMA_19972

has super-classes
organ partc

antiemeticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_50919

has super-classes
medication rolec

antigen specific antibodies assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002145

has super-classes
analyte assayc
has sub-classes
CMV antibody assayc, EBV IgG antibody assayc, EBV IgM antibody assayc, HCV antibody assayc, HIV antibody assayc, HIV group O antibody assayc, core HBV IgM antibody assayc, core HBV antibody assayc, surface HBV antibody assayc

antimicrobial agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_33281

has super-classes
medication rolec

aortac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000947

has super-classes
material anatomical entityc

aorta specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002542

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some aortac))
has super-classes
specimen from organismc

approval to proceed with collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000224

has super-classes
information content entityc

Archaeac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2157

has super-classes
organismc

areolac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002032

has super-classes
material anatomical entityc

areolar swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002603

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen with swabc and (has_specified_inputop some areolac)))
has super-classes
swab specimenc

arterial bloodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0013755

has super-classes
bloodc

arterial blood specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000013

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some arterial bloodc))
has super-classes
bodily fluid specimenc

ascending aortac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001496

has super-classes
organ partc

ascending colonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001156

has super-classes
organ partc

ascites fluid from specimen donor during surgery volume measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000149

has super-classes
measurement datumc

Ashkenazi Jewc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ERO_0001978

has super-classes
ethnic groupc

assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000070

is equivalent to
achieves_planned_objectiveop some assay objectivec
has super-classes
planned processc
has_specified_inputop some material entityc and (has roleop some evaluant rolec)
realizesop some evaluant rolec
has_specified_outputop some data itemc and (is aboutop some material entityc and (has roleop some evaluant rolec))
has sub-classes
analyte assayc, temperature measurement assayc, volume measurement assayc

assay objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000441

has super-classes
objective specificationc
has sub-classes
analyte measurement objectivec

atomc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_33250

has super-classes
material entityc

atrial appendage specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002543

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some atrium auricular regionc))
has super-classes
specimen from organismc

atrium auricular regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0006618

has super-classes
multi-tissue structurec

aunt clinical history of cancerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002373

has super-classes
family clinical history of cancerc

Australianc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C126535

has super-classes
populationc

Australian/New Zealand Ethnicityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C128458

has super-classes
ethnic groupc

authenticationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020023

has super-classes
processc
processc and (realizesop some credential rolec) and (has participantop some data itemc) and (has participantop some inverse is aboutop some data itemc)

authorization documentation for postmortem specimen donation for a specified purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000490

has super-classes
obsolete authorization documentc
has sub-classes
authorization for postmortem specimen donation for transplantation and researchc, authorization for postmortem specimen donation for transplantation purposes onlyc, authorization not obtained for whole brain donationc, limitations on research authorization for use of donated specimensc

authorization for postmortem specimen donation for transplantation and researchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000492

has super-classes
authorization documentation for postmortem specimen donation for a specified purposec

authorization for postmortem specimen donation for transplantation purposes onlyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000491

has super-classes
authorization documentation for postmortem specimen donation for a specified purposec

authorization not obtained for whole brain donationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000493

has super-classes
authorization documentation for postmortem specimen donation for a specified purposec

authorization to collect of minimum number of organ/tissue types for a specific study inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000497

has super-classes
inclusion criterionc

autolysis value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000087

has super-classes
categorical value specificationc
has members
0-non autolyisni, 1-slight autolysisni, 2-moderate autolysisni, 3-severe autolysisni

automatic tissue processorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001064

has super-classes
devicec
has functionop some reagent application functionc
has functionop some mechanical functionc
has sub-classes
Leica Peloris rapid tissue processorc

average agec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001001

has super-classes
average valuec
average valuec and (is aboutop some (measurement datumc and (is aboutop some one-dimensional temporal regionc and (has temporal occupantop exactly 1 historyc))) and (part ofop some data setc))

average daily use of cigarette datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000042

has super-classes
average valuec
is_specified_output_ofop some averaging data transformationc

average valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000679

is equivalent to
is_specified_output_ofop some averaging data transformationc
has super-classes
data itemc
has sub-classes
average agec, average daily use of cigarette datumc

averaging data transformationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200170

is equivalent to
(has_specified_outputop some average valuec) or (achieves_planned_objectiveop some averaging objectivec)
has super-classes
data transformationc

averaging objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000425

has super-classes
data transformation objectivec

Bacteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2

has super-classes
organismc

basaloid lung carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_7045

has super-classes
lung carcinomac

base ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000001

has super-classes
ontology modulec

beginning time of parent specimen dissection.c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000206

has super-classes
data itemc

bilateral oophorectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000157

has super-classes
surgical procedurec

bilateral salpingo-oophorectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000162

has super-classes
surgical procedurec

Bilateriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33213

has super-classes
Opisthokontac
has sub-classes
Vertebrata <vertebrates>c

bilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001970

has super-classes
bodily fluidc

bile specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002501

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some bilec))
has super-classes
bodily fluid specimenc

biobankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000000

is equivalent to
object aggregatec and (has partop some object aggregatec and (has partop only specimenc and (participates inop some storagec))) and (has partop some material information bearerc and (participates inop some digital curationc and (has_specified_outputop some data setc and (is aboutop some object aggregatec and (has partop only specimenc))))) and (is owned byop some biobank organizationc)
has super-classes
object aggregatec
has sub-classes
central biobankc, hosting biobankc, human biobankc, human brain biobankc

biobank contact personc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000013

is equivalent to
Homo sapiensc and (is member of organizationop some biobank organizationc) and (bearer ofop some biobank contact rolec)
has super-classes
Homo sapiensc

biobank contact rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000093

has super-classes
contact rolec

biobank description in englishc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000000

has super-classes
textual entityc
is aboutop some biobankc

biobank idenfier with ISO 3166-1 alpha-2 codec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000005

Textual string of letters starting with the country code (according to standard ISO1366 alpha2) followed by the underscore “_” and post-fixed by a biobank ID or name specified by its juristic person (nationally specific).
has super-classes
biobank proper namec
(has partop some ISO 3166-1 alpha-2 codec) and (designatesop some biobankc)
has sub-classes
biobank identifier with ISO 3166-1 alpha-2 code and CTEP organization identifierc

biobank identifier with ISO 3166-1 alpha-2 code and CTEP organization identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000047

has super-classes
biobank idenfier with ISO 3166-1 alpha-2 codec
(has partop some ISO 3166-1 alpha-2 codec and (CTEP organization identifierc and (designatesop only biobank organizationc))) and (designatesop some biobankc)

biobank location ISO 3166-1 alpha-2 codec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000045

is equivalent to
ISO 3166-1 alpha-2 codec and (designatesop some geographic locationc and (location ofop some biobankc))
has super-classes
ISO 3166-1 alpha-2 codec

biobank organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000010

is equivalent to
organizationc and ((ownsop some biobankc) or (administratesop some biobankc)) and (bearer ofop some legal person rolec)
has super-classes
organizationc
has organization memberop some biobank contact personc

biobank proper namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000003

is equivalent to
designatesop some biobankc
has super-classes
identifierc
has sub-classes
biobank idenfier with ISO 3166-1 alpha-2 codec

biobank's unique resource locatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000020

has super-classes
unique resource locatorc

biological family relationshipc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ERO_0002037

has super-classes
family relationshipc
has sub-classes
child relationshipc

biological sexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000047

has super-classes
organismal qualityc
has sub-classes
donor's biological sexc

biological_processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0008150

has super-classes
processc
has sub-classes
chewing tobacco behaviorc, immune responsec, smoking behaviorc

biopsyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002650

has super-classes
collecting specimen from organismc
has_specified_inputop some devicec
has_specified_inputop some material anatomical entityc
has_specified_outputop some pre-mortem specimenc
has sub-classes
abdominal wall fat pad biopsyc, bone marrow biopsyc, left kidney biopsyc, left lung biopsyc, needle biopsyc, right kidney biopsyc, right lung biopsyc, skinpunch biopsyc, surgical biopsyc, tail biopsyc

birth cohort study designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002614

has super-classes
cohort study designc

Birth Control Methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C106501

has super-classes
plan specificationc
has sub-classes
injection-based hormonal birth control methodc, intrauterine device-based hormonal birth control methodc, patch-based hormonal birth control methodc, pill-based hormonal birth control methodc, vaginal ring-based hormonal birth control methodc

bloodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000178

has super-classes
bodily fluidc
has sub-classes
arterial bloodc, capillary bloodc, umbilical cord bloodc, venous bloodc

blood additive rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000022

has super-classes
material to be added rolec

blood draw timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000079

has super-classes
data itemc
has sub-classes
first blood draw timec

blood not received in biobankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000196

has super-classes
reason for not banking pre-operative blood specimenc

blood plasma specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100016

has super-classes
processed specimenc
is_specified_output_ofop some material component separationc and (has_specified_inputop some blood specimenc)
material entityc and (has roleop some specimen rolec)
has sub-classes
platelet-poor plasma specimenc

blood plasma specimen barcodec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000252

has super-classes
specimen barcodec

blood plasma specimen volumec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000253

has super-classes
scalar measurement datumc

blood serum specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100017

has super-classes
processed specimenc
has roleop some specimen rolec
is_specified_output_ofop some (filtrationc or centrifugationc or dialysisc) and (has_specified_inputop some blood specimenc)

blood specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000655

has super-classes
bodily fluid specimenc
derives fromop some bloodc
has roleop some specimen rolec
is_specified_output_ofop some collecting specimen from organismc
has sub-classes
blood specimen on blood spot cardc

blood specimen collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000231

has super-classes
collecting specimen from organismc
has sub-classes
fresh venous needle blood specimen collectionc, pre-operative blood specimen collectionc

blood specimen collection and processing SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000222

has super-classes
standard operating procedurec

blood specimen container with EDTAc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000233

has super-classes
specimen containerc

blood specimen on blood spot cardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000039

A specimen that located in a blood spot card via blood spotting process.
has super-classes
blood specimenc
processed specimenc
is_specified_output_ofop some blood spottingc
located inop some blood spot cardc

blood specimen volumec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000236

has super-classes
scalar measurement datumc
has sub-classes
blood specimen volume in conical centrifuge tubec

blood specimen volume in conical centrifuge tubec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000251

has super-classes
blood specimen volumec

blood spot cardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000030

has super-classes
containerc
has functionop some contain functionc
has functionop some solid support functionc

blood spot card boxc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000016

has super-classes
containerc
has functionop some contain functionc

blood spottingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000035

has super-classes
adding specimen into a containerc
has participantop some blood spot cardc
has_specified_inputop some blood specimenc

blood transfusion exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002429

has super-classes
exclusion criterionc

blood vesselc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001981

has super-classes
material anatomical entityc

blood was hemolyzed or not useablec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000199

has super-classes
reason for not banking pre-operative blood specimenc

BMI range inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002428

has super-classes
inclusion criterionc

bodily fluidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0006314

has super-classes
organism substancec
has sub-classes
bilec, bloodc, cerebrospinal fluidc, cervical mucusc, milkc, pericardial fluidc, peritoneal fluidc, pleural fluidc, sweatc, synovial fluidc

bodily fluid specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000009

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some bodily fluidc))
has super-classes
specimen from organismc
has sub-classes
arterial blood specimenc, bile specimenc, blood specimenc, capillary blood specimenc, cerebrospinal fluid specimenc, cervical mucus specimenc, milk specimenc, pericardial fluid specimenc, peritoneal fluid specimenc, pleural fluid specimenc, sweat specimenc, synovial fluid specimenc, umbilical cord blood specimenc, venous blood specimenc

body of pancreasc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001150

has super-classes
organ partc

body of stomachc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001161

has super-classes
organ partc

body of uterusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0009853

has super-classes
organ partc

bone marrowc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002371

has super-classes
tissuec

bone marrow biopsyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002662

has super-classes
biopsyc
has_specified_inputop some bone marrowc

bone marrow specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002512

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some bone marrowc))
has super-classes
specimen from organismc

Borderline Ovarian Clear Cell Tumorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C40080

has super-classes
ovarian clear cell carcinomac

Borderline Ovarian Endometrioid Tumor/Atypical Proliferative Ovarian Endometrioid Tumorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C7983

has super-classes
endometrioid ovary carcinomac

Borderline Ovarian Mucinous Tumor, Endocervical-Likec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C40038

has super-classes
ovarian mucinous neoplasmc

Borderline Ovarian Mucinous Tumor, Intestinal Typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C40037

has super-classes
ovarian mucinous neoplasmc

Borderline Ovarian Seromucinous Tumor/Atypical Proliferative Ovarian Seromucinous Tumorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C7281

has super-classes
ovary epithelial cancerc

Borderline Ovarian Serous Tumorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C5226

has super-classes
ovarian serous carcinomac

Borderline Ovarian Transitional Cell Tumorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C40088

has super-classes
ovary transitional cell carcinomac

brainc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000955

has super-classes
material anatomical entityc

brain specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002516

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some brainc))
has super-classes
specimen from organismc

breastc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000310

has super-classes
material anatomical entityc

breast specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002523

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some breastc))
has super-classes
specimen from organismc

breast swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002604

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen with swabc and (has_specified_inputop some breastc)))
has super-classes
swab specimenc

bridge ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000004

has super-classes
ontology modulec
has sub-classes
taxonomic bridge ontology modulec

bronchial alveolar lavagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100067

has super-classes
processed specimenc
is_specified_output_ofop only lavagec
has roleop some specimen rolec

bronchiolo-alveolar adenocarcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_4926

has super-classes
lung adenocarcinomac
has sub-classes
mixed mucinous and nonmucinous bronchioloalveolar adenocarcinomac, mucinous bronchioloalveolar adenocarcinomac, nonmucinous bronchioloalveolar adenocarcinomac

brother clinical history of cancerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002374

has super-classes
family clinical history of cancerc

buffer formula for specimen fixativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000214

has super-classes
protocolc

buffered formalin conditionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000220

has super-classes
qualityc
has sub-classes
fresh buffered formalin conditionc, recycled buffered formalin conditionc

buffy coat specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000036

has super-classes
processed specimenc
is_specified_output_ofop some centrifugationc and (has_specified_inputop some blood specimenc)

bupivacainec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_3215

has super-classes
molecular entityc

caecumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001153

has super-classes
organ partc

cancerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_162

has super-classes
diseasec
has sub-classes
cell type cancerc, colon carcinomac, lung carcinomac, neuroblastomac, ovarian cancerc, renal carcinomac

Cancer Therapeutic Procedurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C16212

has super-classes
treatmentc
has sub-classes
Adjuvant Therapyc, surgical cancer treatmentc

candidate eligible for study rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000147

has super-classes
eligibility of candidate participationc

candidate ineligible for study rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000148

has super-classes
eligibility of candidate participationc

cannot be assessed determinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002200

has super-classes
reason for lack of data itemc
has sub-classes
GXc, pNXc, pTXc

capillary bloodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0013757

has super-classes
bloodc

capillary blood specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000015

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some capillary bloodc))
has super-classes
bodily fluid specimenc

carbon dioxide level of specimen donor recorded at time closest to organ excisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000137

has super-classes
measurement datumc

cardiac atriumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002081

has super-classes
organ partc
has sub-classes
right cardiac atriumc

case control study designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001017

has super-classes
study designc
is disjoint with
cross sectional study designc, longitudinal study designc, population based study designc, quality control study designc, twin study designc

case IDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001047

has super-classes
identifierc
is aboutop some Homo sapiensc and (participates inop some specimen collection processc) and (has roleop some donorc)

case report form completion SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000073

has super-classes
standard operating procedurec

categorical value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001930

has super-classes
value specificationc
has sub-classes
H&E staining equipment maintenance performed and recorded frequency value specificationc, International Federation of Gynecology and Obstetrics cervical cancer stage value specificationc, International Federation of Gynecology and Obstetrics ovarian cancer stage value specificationc, autolysis value specificationc, clinical tumor stage group according to AJCC 7th editionc, histologic grade according to AJCC 7th editionc, histologic grade according to the Fuhrman Nuclear Grading Systemc, histologic grade for ovarian tumorc, pathologic distant metastases stage for colon according to AJCC 7th editionc, pathologic distant metastases stage for kidney according to AJCC 7th editionc, pathologic distant metastases stage for lung according to AJCC 7th editionc, pathologic distant metastases stage for ovary according to AJCC 7th editionc, pathologic lymph node stage for colon and rectum according to AJCC 7th editionc, pathologic lymph node stage for kidney according to AJCC 7th editionc, pathologic lymph node stage for lung according to AJCC 7th editionc, pathologic lymph node stage for ovary according to AJCC 7th editionc, pathologic primary tumor stage for colon and rectum according to AJCC 7th editionc, pathologic primary tumor stage for kidney according to AJCC 7th editionc, pathologic primary tumor stage for lung according to AJCC 7th editionc, pathologic primary tumor stage for ovary according to AJCC 7th editionc, performance status value specificationc

cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000000

has super-classes
material entityc
has sub-classes
erythrocytec, experimentally modified cell in vitroc, leukocytec, reticulocytec

cell culture splittingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600037

An active cell culture is typically split when it has grown to confluence in its culture dish. Cell culture splitting of a cell culture sample results in an increase in its passage number, which measures how long a sample has been propagated in vitro, and therefore how many selective or genetic changes it is likely to have undergone.
has super-classes
material component separationc
has_specified_inputop some cultured cell populationc
has_specified_outputop some cultured cell populationc
achieves_planned_objectiveop some portioning objectivec

cell freezing mediumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001912

has super-classes
processed materialc

cell linec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CLO_0000031

has super-classes
secondary cultured cell populationc
has grainop only cell line cellc
has grainop some cell line cellc
has sub-classes
immortal cell linec

cell line cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CLO_0000001

has super-classes
secondary cultured cellc
(is_specified_output_ofop some establishing cell linec) or (derives fromop some is_specified_output_ofop some establishing cell linec)
derives fromop some primary cultured cellc
has sub-classes
immortal cell line cellc

cell pelletc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_1000024

has super-classes
processed materialc
derives fromop some cultured cell populationc or bronchial alveolar lavagec
is_specified_output_ofop some centrifugationc

cell pellet specimen barcodec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000263

has super-classes
specimen barcodec

cell pellet volumec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000262

has super-classes
scalar measurement datumc

cell type cancerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_0050687

has super-classes
cancerc

Central Africanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C126528

has super-classes
populationc

Central Asianc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C126534

has super-classes
populationc

central biobankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000356

has super-classes
biobankc

centrally registered identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000578

has super-classes
information content entityc
has partop some centrally registered identifier symbolc
has partop some denotesop some centrally registered identifier registryc
has sub-classes
unique resource locatorc

centrally registered identifier registryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000579

has super-classes
data setc

centrally registered identifier symbolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000577

has super-classes
symbolc
part ofop some centrally registered identifierc
has sub-classes
courier tracking numberc, identification number of a protocol at a particular sitec

centrifugationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302886

has super-classes
material component separationc
has participantop some centrifugec
achieves_planned_objectiveop some separation into different composition objectivec

centrifugec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0400106

has super-classes
measurement devicec
material separation devicec
has functionop some material separation functionc and (realized inop only centrifugationc)
has partop some has functionop some contain functionc
has functionop some measure functionc

cerebellumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002037

has super-classes
multi-tissue structurec

cerebellum specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002538

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some cerebellumc))
has super-classes
specimen from organismc

cerebral cortexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000956

has super-classes
anatomical clusterc

cerebral cortex specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002536

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some cerebral cortexc))
has super-classes
specimen from organismc

cerebrospinal fluidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001359

has super-classes
bodily fluidc

cerebrospinal fluid specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002502

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some cerebrospinal fluidc))
has super-classes
bodily fluid specimenc

cervical mucusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000316

has super-classes
bodily fluidc

cervical mucus specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000002

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some cervical mucusc))
has super-classes
bodily fluid specimenc

cessation of brain activity deathc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000094

has super-classes
life-death temporal boundaryc

cessation of cardiac activity deathc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000095

has super-classes
life-death temporal boundaryc

charged glass slide indicatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000324

has super-classes
information content entityc

cheekc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001567

has super-classes
material anatomical entityc

cheek swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002605

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen with swabc and (has_specified_inputop some cheekc)))
has super-classes
swab specimenc

chemotherapy treatment exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002424

has super-classes
exclusion criterionc

chemotherapy treatment within the recent past exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002426

has super-classes
exclusion criterionc

chewing tobaccoc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000047

has super-classes
tobacco materialc
derives fromop some tobaccoc

chewing tobacco behaviorc back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/efo/EFO_0004774

has super-classes
biological_processc
planned processc
has_specified_inputop some chewing tobaccoc

child relationshipc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ERO_0002047

has super-classes
biological family relationshipc

chorionic villusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0007106

has super-classes
material anatomical entityc

chorionic villus specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000010

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some chorionic villusc))
has super-classes
specimen from organismc

chromophobe renal cell carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_4471

has super-classes
renal carcinomac

cigarc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000046

has super-classes
nicotine materialc
tobacco materialc
has partop some nicotinec
derives fromop some tobaccoc

cigarettec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000044

has super-classes
nicotine materialc
tobacco materialc
derives fromop some tobaccoc
has partop some nicotinec

clear cell renal cell carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_4467

has super-classes
renal carcinomac

clinical historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000015

has super-classes
information content entityc
has sub-classes
a clinical history of contact with someone with smallpoxc, clinical history devoid of cancerc, clinical history of Alzheimer's diseasec, clinical history of Amyotrophic Lateral Sclerosisc, clinical history of Hepatitis Bc, clinical history of Hepatitis Cc, clinical history of Human Immunodeficiency Virusc, clinical history of Multiple Sclerosisc, clinical history of Reye's Syndromec, clinical history of Severe Acute Respiratory Syndromec, clinical history of West Nile Virusc, clinical history of West Nile Virus exposurec, clinical history of a prolonged feverc, clinical history of abnormal white blood cell levelsc, clinical history of an unexplained cough or shortness of breathc, clinical history of animal tissue xenotransplantc, clinical history of ascitesc, clinical history of blood transfusion in foreign countryc, clinical history of blue or purple spots on skin or mucous membranesc, clinical history of cancerc, clinical history of cancer at deathc, clinical history of cancer within a time period before deathc, clinical history of cellulitisc, clinical history of clotting disordersc, clinical history of dementia of unknown causec, clinical history of dialysisc, clinical history of drug abusec, clinical history of encephalitisc, clinical history of exposure to Severe Acute Respiratory Syndromec, clinical history of exposure to rabiesc, clinical history of exposure to toxinsc, clinical history of fungal infectionsc, clinical history of gonorrheac, clinical history of growth hormone usec, clinical history of high unexplained feverc, clinical history of human tissue transplantc, clinical history of idiopathic heart diseasec, clinical history of inability to have Human Immunodeficiency Virus testing due to hemodilutionc, clinical history of long term steroid usec, clinical history of lupusc, clinical history of meningitis at deathc, clinical history of night sweatsc, clinical history of open woundsc, clinical history of opportunistic infectionsc, clinical history of osteomyelitisc, clinical history of pneumoniac, clinical history of positive blood culturesc, clinical history of repeated HIV assaysc, clinical history of rheumatoid arthritisc, clinical history of sarcoidosisc, clinical history of sclerodermac, clinical history of sepsisc, clinical history of sexually transmitted diseasec, clinical history of smallpox vaccinationc, clinical history of syphilisc, clinical history of tuberculosisc, clinical history of unexplained lymphadenopathyc, clinical history of unexplained seizuresc, clinical history of unexplained weakness and fatiguec, clinical history of unexplained weight lossc, exposure to second hand smokec, family clinical history of cancerc, gynecologic surgery historyc, hormonal replacement therapy historyc, pregnancy historyc, unknown clinical history of cancerc

clinical history devoid of cancerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002369

has super-classes
clinical historyc

clinical history of a prolonged feverc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000580

has super-classes
clinical historyc

clinical history of abnormal white blood cell levelsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000548

has super-classes
clinical historyc

clinical history of Alzheimer's diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000600

has super-classes
clinical historyc

clinical history of Amyotrophic Lateral Sclerosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000603

has super-classes
clinical historyc

clinical history of an unexplained cough or shortness of breathc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000581

has super-classes
clinical historyc

clinical history of animal tissue xenotransplantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000554

has super-classes
clinical historyc

clinical history of ascitesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000550

has super-classes
clinical historyc

clinical history of blood transfusion in foreign countryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000552

has super-classes
clinical historyc

clinical history of blue or purple spots on skin or mucous membranesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000578

has super-classes
clinical historyc

clinical history of cancerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002368

has super-classes
clinical historyc

clinical history of cancer at deathc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000558

has super-classes
clinical historyc

clinical history of cancer within a time period before deathc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000559

has super-classes
clinical historyc

clinical history of cellulitisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000551

has super-classes
clinical historyc

clinical history of clotting disordersc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000573

has super-classes
clinical historyc

clinical history of dementia of unknown causec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000601

has super-classes
clinical historyc

clinical history of dialysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000557

has super-classes
clinical historyc

clinical history of drug abusec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000584

has super-classes
clinical historyc

clinical history of encephalitisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000562

has super-classes
clinical historyc

clinical history of exposure to rabiesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000568

has super-classes
clinical historyc

clinical history of exposure to Severe Acute Respiratory Syndromec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000586

has super-classes
clinical historyc

clinical history of exposure to toxinsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000567

has super-classes
clinical historyc

clinical history of fungal infectionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000549

has super-classes
clinical historyc

clinical history of gonorrheac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000589

has super-classes
clinical historyc

clinical history of growth hormone usec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000574

has super-classes
clinical historyc

clinical history of Hepatitis Bc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000591

has super-classes
clinical historyc

clinical history of Hepatitis Cc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000592

has super-classes
clinical historyc

clinical history of high unexplained feverc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000546

has super-classes
clinical historyc

clinical history of Human Immunodeficiency Virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000593

has super-classes
clinical historyc

clinical history of human tissue transplantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000553

has super-classes
clinical historyc

clinical history of idiopathic heart diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000599

has super-classes
clinical historyc

clinical history of inability to have Human Immunodeficiency Virus testing due to hemodilutionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000575

has super-classes
clinical historyc

clinical history of long term steroid usec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000563

has super-classes
clinical historyc

clinical history of lupusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000594

has super-classes
clinical historyc

clinical history of meningitis at deathc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000561

has super-classes
clinical historyc

clinical history of Multiple Sclerosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000602

has super-classes
clinical historyc

clinical history of night sweatsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000577

has super-classes
clinical historyc

clinical history of open woundsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000545

has super-classes
clinical historyc

clinical history of opportunistic infectionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000582

has super-classes
clinical historyc

clinical history of osteomyelitisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000564

has super-classes
clinical historyc

clinical history of pneumoniac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000544

has super-classes
clinical historyc

clinical history of positive blood culturesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000547

has super-classes
clinical historyc

clinical history of repeated HIV assaysc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002389

has super-classes
clinical historyc

clinical history of Reye's Syndromec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000597

has super-classes
clinical historyc

clinical history of rheumatoid arthritisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000598

has super-classes
clinical historyc

clinical history of sarcoidosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000595

has super-classes
clinical historyc

clinical history of sclerodermac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000596

has super-classes
clinical historyc

clinical history of sepsisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000543

has super-classes
clinical historyc

clinical history of Severe Acute Respiratory Syndromec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000585

has super-classes
clinical historyc

clinical history of sexually transmitted diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000583

has super-classes
clinical historyc

clinical history of smallpox vaccinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000555

has super-classes
clinical historyc

clinical history of syphilisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000590

has super-classes
clinical historyc

clinical history of tuberculosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000560

has super-classes
clinical historyc

clinical history of unexplained lymphadenopathyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000579

has super-classes
clinical historyc

clinical history of unexplained seizuresc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000565

has super-classes
clinical historyc

clinical history of unexplained weakness and fatiguec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000566

has super-classes
clinical historyc

clinical history of unexplained weight lossc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000576

has super-classes
clinical historyc

clinical history of West Nile Virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000587

has super-classes
clinical historyc

clinical history of West Nile Virus exposurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000588

has super-classes
clinical historyc

clinical tumor stage group according to AJCC 7th editionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002314

has super-classes
categorical value specificationc
has members
Occult Carcinoma (AJCC 7th)ni, Stage 0 (AJCC 7th)ni, Stage I (AJCC 7th)ni, Stage IIA (AJCC 7th)ni, Stage IIB (AJCC 7th)ni, Stage IIC (AJCC 7th)ni, Stage IIIA (AJCC 7th)ni, Stage IIIB (AJCC 7th)ni, Stage IIIC (AJCC 7th)ni, Stage IVA (AJCC 7th)ni, Stage IVB (AJCC 7th)ni

clinically relevant exposure inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002455

has super-classes
inclusion criterionc

clinically relevant lifestyle inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002454

has super-classes
inclusion criterionc

CMV antibody assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002154

has super-classes
antigen specific antibodies assayc
(realizesop some analyte rolec and (inheres inop some immunoglobulin complexc and (has disposition to bindop some Cytomegalovirusc))) and (has_specified_inputop some immunoglobulin complexc and (has disposition to bindop some Cytomegalovirusc))

cohort study designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001020

has super-classes
longitudinal study designc
has sub-classes
birth cohort study designc
is disjoint with
panel study designc

colectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OAE_0001159

has super-classes
surgical procedurec
has sub-classes
left hemicolectomyc, proctocolectomyc, rectosigmoidectomyc, right hemicolectomyc, sigmoid colectomyc, subtotal colectomyc, total colectomyc, transverse colectomyc

collecting duct carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_4464

has super-classes
renal carcinomac

collecting specimen from organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600005

has super-classes
specimen collection processc
has_specified_inputop some organismc
has_specified_outputop some specimenc
achieves_planned_objectiveop some specimen collection objectivec
has sub-classes
biopsyc, blood specimen collectionc, collecting specimen from organism during organ donationc, lavagec, postmortem collecting specimen from organismc, specimen surgical removalc

collecting specimen from organism during organ donationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000062

has super-classes
collecting specimen from organismc

collecting specimen with swabc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002600

has super-classes
specimen collection processc

collection of humansc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000023

has super-classes
collection of organismsc

collection of organismsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000000

has super-classes
object aggregatec
has sub-classes
collection of humansc

collection of specimensc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002076

is equivalent to
material entityc and (has memberop only specimenc)
has super-classes
material entityc
has sub-classes
hosted study collectionc, specimens derived from shared ancestorc

collection packetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000028

has super-classes
material entityc
has partop some containerc
has sub-classes
collection packet with empty containerc, collection packet with empty container and unfilled information materialc, collection packet with specimenc

collection packet component IDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000360

has super-classes
identifierc

collection packet identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000068

has super-classes
identifierc

collection packet with empty containerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000025

has super-classes
collection packetc
lacks_partop some specimenc
lacks_partop some material information bearerc

collection packet with empty container and unfilled information materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000040

has super-classes
collection packetc
lacks_partop some specimenc
has partop some material entityc and (bearer ofop some concretizesop some information content entityc)

collection packet with specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000024

has super-classes
collection packetc
has partop some specimenc and (located inop some containerc)
has sub-classes
collection packet with specimen and information materialc

collection packet with specimen and information materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000021

has super-classes
collection packet with specimenc
has partop some material entityc and (bearer ofop some concretizesop some information content entityc and (is aboutop some specimenc))

colonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001155

has super-classes
material anatomical entityc

colon adenocarcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_234

has super-classes
colon carcinomac

colon carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_1520

has super-classes
cancerc
has sub-classes
Colon Undifferentiated Carcinomac, adenosquamous colon carcinomac, colon adenocarcinomac, colon mucinous adenocarcinomac, colon signet ring adenocarcinomac, colon small cell carcinomac, colon squamous cell carcinomac, medullary colon carcinomac

colon mucinous adenocarcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_3029

has super-classes
colon carcinomac

colon signet ring adenocarcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_3033

has super-classes
colon carcinomac

colon small cell carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_6727

has super-classes
colon carcinomac

colon specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002533

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some colonc))
has super-classes
specimen from organismc

colon squamous cell carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_5519

has super-classes
colon carcinomac

Colon Undifferentiated Carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C7100

has super-classes
colon carcinomac

colorectal cancer risk factorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000533

has super-classes
risk factorc
has sub-classes
Type II diabetes colorectal cancer risk factorc, familial adenomatous polyposis colorectal cancer risk factorc, high meat diet colorectal cancer risk factorc, obesity colorectal cancer risk factorc, previous colorectal polyps colorectal cancer risk factorc

comment from blood specimen collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000238

has super-classes
textual entityc

comment from blood specimen processingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000260

has super-classes
textual entityc

comment from blood specimen storagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000248

has super-classes
textual entityc

comment from clinical data entry formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000520

has super-classes
textual entityc

comment from pathology review of FFPE slidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000405

has super-classes
textual entityc

comment from specimen receiptc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000203

has super-classes
textual entityc

comment from tissue procurementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001037

has super-classes
textual entityc
is aboutop some sampling specimens for biobankc or (participates inop some sampling specimens for biobankc)
has sub-classes
comment on donor pre-operative bowel preparation prior to surgeryc, comment on notable events during donor surgeryc, comment on procurement site restrictionc, comment on resolved specimen collection issuec, follow-up on donor outcome comment from tissue procurementc, oxygen desaturation epochs prior to organ excision descriptionc, pathologist submitted specimen procurement feedbackc, reason for not banking pre-operative blood specimenc, reason for not collecting frozen specimensc

comment on deviations from H&E equipment maintenance SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000348

has super-classes
textual entityc

comment on deviations from microtome daily maintenance SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000329

has super-classes
textual entityc

comment on deviations from water bath daily maintenance SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000332

has super-classes
textual entityc

comment on deviations in specimen dimensions from a tissue procurement SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000434

has super-classes
textual entityc

comment on donor pre-operative bowel preparation prior to surgeryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000151

has super-classes
comment from tissue procurementc

comment on exposure to environmental and workplace carcinogensc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000532

has super-classes
textual entityc

comment on FFPE slide imagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000386

has super-classes
textual entityc

comment on FFPE tissue block storagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000316

has super-classes
textual entityc

comment on FFPE tissue processingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000308

has super-classes
textual entityc

comment on gross evaluation of resected tissue specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000422

has super-classes
textual entityc

comment on maintenance discrepancy from manufacturer recommendationsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000290

has super-classes
textual entityc

comment on notable events during donor surgeryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000152

has super-classes
comment from tissue procurementc

comment on paraffin embedding of FFPE tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000317

has super-classes
textual entityc

comment on preparation of FFPE H&E stained slidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000345

has super-classes
textual entityc

comment on preparation of FFPE tissue sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000333

has super-classes
textual entityc

comment on procurement site restrictionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000384

has super-classes
comment from tissue procurementc

comment on resolved specimen collection issuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000091

has super-classes
comment from tissue procurementc

comment on specimen integrity after transportc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000282

has super-classes
textual entityc

comment on the use of hormonally based birth controlc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000528

has super-classes
textual entityc

comment on the use of hormone replacement therapyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000531

has super-classes
textual entityc

comment on tissue specimen processingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000354

has super-classes
textual entityc

comments related to research authorization processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000487

has super-classes
textual entityc

commercial manufacturerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000217

has super-classes
manufacturerc

comorbidityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001008

It is argued that Comorbidity occurs due to a disposition established by a prior infection with a pathogenic organism of a different kind.
has super-classes
diagnosisc
is disjoint with
primary diagnosisc

completely filled informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000023

has super-classes
informed consent formc
is_specified_output_ofop some form fillingc and (has_specified_inputop some data confirm questionnairec) and (has participantop some Homo sapiensc and (has roleop some human subject recuiter rolec)) and (has participantop some Homo sapiensc and (has roleop some patient rolec))

computed tomography assisted biopsyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002652

has super-classes
image guided biopsyc
has_specified_inputop some computed tomography scannerc

computed tomography scannerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000982

has super-classes
image creation devicec
has functionop some image acquisition functionc

concentration unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000051

has super-classes
measurement unit labelc
has members
colony forming unit per volumeni, gram per deciliterni, gram per literni, mass percentageni, mass volume percentageni, microgram per literni, micromolarni, milligram per milliliterni, milliliter per literni, millimolarni, molarni, nanomolarni, pHni, picomolarni, volume percentageni

conclusion based on datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001909

has super-classes
information content entityc
is_supported_by_dataop some data itemc
is_specified_output_ofop some drawing a conclusion based on datac
has sub-classes
conclusion textual entityc
is in domain of
is_supported_by_dataop

conclusion textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000144

has super-classes
textual entityc
conclusion based on datac
is_specified_output_ofop some drawing a conclusion based on datac
is_supported_by_dataop some data itemc
has sub-classes
tissue specimen suitability for molecular analysisc

conditional specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000001

has super-classes
directive information entityc

confirmation of histologic type of FFPE H&E tumor slidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000402

has super-classes
information content entityc

conical centrifuge tube identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000250

has super-classes
identifierc

contact rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000012

has super-classes
role in human social processesc
realized inop only contactingc
inheres inop only Homo sapiensc and (is member of organizationop some organizationc)
realized inop some contactingc
has sub-classes
biobank contact rolec, sample collection or study contact rolec

contactingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000011

Contacting is the process of one human being starting a communication process with another human being. Contacting can be done using all modes of communication used by humans.
has super-classes
planned processc

contain functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000370

has super-classes
functionc
has sub-classes
containing a specimen functionc

containerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000967

is equivalent to
devicec and (has functionop some contain functionc)
has super-classes
devicec
has actual loadop some measurement datumc
has maximum capacityop some measurement datumc
has sub-classes
blood spot cardc, blood spot card boxc, cryovialc, cryovial boxc, freezerc, physical storec, smoking pipec, specimen containerc, test tubec, trash containerc, vacutainerc
is in domain of
has actual loadop, has maximum capacityop

containing a specimen functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002087

has super-classes
contain functionc

continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000002

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
entityc
has sub-classes
generically dependent continuantc, independent continuantc, specifically dependent continuantc
is in domain of
participates inop
is in range of
has participantop
is disjoint with
occurrentc

continuant fiat boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000140

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
immaterial entityc
has sub-classes
one-dimensional continuant fiat boundaryc, two-dimensional continuant fiat boundaryc, zero-dimensional continuant fiat boundaryc
is disjoint with
spatial regionc

cool functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000387

has super-classes
functionc

core HBV antibody assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002149

has super-classes
antigen specific antibodies assayc
(realizesop some analyte rolec and (inheres inop some immunoglobulin complexc and (has disposition to bindop some Hepatitis B virusc))) and (has_specified_inputop some immunoglobulin complexc and (has disposition to bindop some Hepatitis B virusc))

core HBV IgM antibody assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002150

has super-classes
antigen specific antibodies assayc
(realizesop some analyte rolec and (inheres inop some immunoglobulin complexc and (has disposition to bindop some Hepatitis B virusc))) and (has_specified_inputop some immunoglobulin complexc and (has disposition to bindop some Hepatitis B virusc))

core needle biopsyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002656

has super-classes
needle biopsyc

coronary arteryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001621

has super-classes
material anatomical entityc

coronary artery specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002540

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some coronary arteryc))
has super-classes
specimen from organismc

cortex of kidneyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001225

has super-classes
material anatomical entityc

cortex of kidney specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002531

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some cortex of kidneyc))
has super-classes
specimen from organismc

Cortex of left kidneyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FMA_15584

has super-classes
organ partc

Cortex of right frontal lobec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FMA_242207

has super-classes
organ partc

countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000032

It can be denoted as an arithmetic value or in form of a word, and is usually as a result of a process.
is equivalent to
is_specified_output_ofop some countingc
has super-classes
measurement datumc
has sub-classes
amount of fresh frozen plasma administered intraoperativelyc, amount of packed red blood cells administered intraoperativelyc, count of current sampled human study participantc, count of current total human study participantc
is disjoint with
scalar measurement datumc, time stamped measurement datumc, physiological measurement datac

count of current sampled human study participantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001010

has super-classes
countc
is aboutop some object aggregatec and (has partop only Homo sapiensc and (bearer ofop some participant under investigation rolec) and (participates inop some specimen collection processc and (part ofop some study design executionc)))
is disjoint with
physiological measurement datac

count of current total human study participantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001011

has super-classes
countc
is aboutop some object aggregatec and (has partop only Homo sapiensc and ((bearer ofop some participant under investigation rolec) and (participates inop some study design executionc)))
is disjoint with
physiological measurement datac

countingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000033

is equivalent to
has_specified_outputop some countc
has super-classes
planned processc

country of residence inclusion criteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002562

has super-classes
inclusion criterionc

courier organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002190

has super-classes
organizationc
has roleop some service provider rolec and (realized inop some material transport servicec)

courier tracking numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002191

has super-classes
centrally registered identifier symbolc

cream delivery form for hormonal replacement therapyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002409

has super-classes
delivery form for hormonal replacement therapyc

credential rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020024

is equivalent to
rolec and (realized inop some authenticationc) and (inheres inop some bearer ofop some concretizesop some identity documentc)
has super-classes
rolec

cross sectional study designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001018

has super-classes
study designc
is disjoint with
case control study designc, longitudinal study designc, population based study designc, quality control study designc, twin study designc

cryovialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000031

has super-classes
containerc

cryovial boxc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000013

has super-classes
containerc
has functionop some contain functionc

cryovial specimen barcodec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000255

has super-classes
specimen barcodec

CTEP organization identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000046

has super-classes
identifierc
designatesop some organizationc

culture mediumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000079

has super-classes
processed materialc

cultured cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000010

has super-classes
experimentally modified cell in vitroc
(is_specified_output_ofop some establishing cell culturec) or (derives fromop some is_specified_output_ofop some establishing cell culturec)
has sub-classes
primary cultured cellc, secondary cultured cellc

cultured cell populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100060

The extent of a 'cultured cell population' is restricted only in that all cell members must share a propagation history (ie be derived through a common lineage of passages from an initial culture). In being defined in this way, this class can be used to refer to the populations that researchers actually use in the practice of science - ie are the inputs to culturing, experimentation, and sharing. The cells in such populations will be a relatively uniform population as they have experienced similar selective pressures due to their continuous co-propagation. And this population will also have a single passage number, again owing to their common passaging history. Cultured cell populations represent only a collection of cells (ie do not include media, culture dishes, etc), and include populations of cultured unicellular organisms or cultured multicellular organism cells. They can exist under active culture, stored in a quiescent state for future use, or applied experimentally.
has super-classes
processed materialc
is_specified_output_ofop some maintaining cell culturec
has grainop some cultured cellc
has grainop only cultured cellc
has sub-classes
secondary cultured cell populationc

curation status specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000078

is equivalent to
{ ready for release , example to be eventually removed , metadata incomplete , uncurated , pending final vetting , metadata complete , organizational term , requires discussion , to be replaced with external ontology term }
has super-classes
data about an ontology partc
has members
example to be eventually removedni, requires discussionni, to be replaced with external ontology termni

curation subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000007

has super-classes
subset ontology modulec

current non-drinker of alcoholc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000508

has super-classes
Alcohol Use Historyc

current reformed smoker for less than 15 years historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000515

has super-classes
Tobacco Smoking Historyc

current reformed smoker for more than 15 years historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000514

has super-classes
Tobacco Smoking Historyc

current smoker historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000513

has super-classes
Tobacco Smoking Historyc

Cytomegalovirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10358

has super-classes
Herpesviridaec

daily microtome maintenancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000328

has super-classes
microtome maintenance frequencyc

daily water bath maintenancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000331

has super-classes
water bath maintenance frequencyc

data about an ontology partc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000102

has super-classes
data itemc
has sub-classes
curation status specificationc, denotator typec, obsolescence reason specificationc, ontology modulec

data and time FFPE tissue cassette ID was recordedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000366

has super-classes
data itemc

data and time of biobank receipt of specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000201

has super-classes
data itemc

data and time of laboratory receipt of specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000239

has super-classes
data itemc

data and time parent specimen ID was recordedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000353

has super-classes
data itemc

data and time specimen was frozen in liquid nitrogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000361

has super-classes
data itemc

data confirm questionnairec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000017

has super-classes
questionnairec
has sub-classes
filled data confirm questionnairec

data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000027

has super-classes
information content entityc
has sub-classes
H&E staining equipment maintenance performed and recorded frequencyc, average valuec, beginning time of parent specimen dissection.c, blood draw timec, data about an ontology partc, data and time FFPE tissue cassette ID was recordedc, data and time of biobank receipt of specimenc, data and time of laboratory receipt of specimenc, data and time parent specimen ID was recordedc, data and time specimen was frozen in liquid nitrogenc, data setc, date and time FFPE tissue cassette placed in fixativec, date and time FFPE tissue cassette placed in processorc, date and time FFPE tissue cassette removed from processorc, date and time FFPE tissue cassette transferred to storagec, date and time FFPE tissue cassette was frozenc, date and time FFPE tissue embedding startedc, date and time FFPE tissue processor cycle endedc, date and time FFPE tissue was preservedc, date and time of blood collectionc, date of FFPE slide review by the pathologistc, date of chemotherapy prior to surgeryc, date of data entryc, date of data updatec, date of form data verificationc, date of hormonal therapy prior to surgeryc, date of immunotherapy prior to surgeryc, date of radiation therapy prior to surgeryc, date of receiving specimen transportc, date of research authorization verificationc, date of research protocol approval as determined by an institutional review boardc, date of research protocol expiration as determined by an institutional review boardc, date of review of pathology case summary reportc, date of specimen collectionc, date of specimen freezing at -70 to -80 degrees Cc, date of specimen placement on dry ice for transportc, date of specimen receipt for pathologist processingc, date of specimen transportc, date of submission of pathology case summary reportc, date on which research authorization was obtained from legally authorized representativec, date that research authorization for post mortem specimen donation was witnessedc, diagnosisc, end date of sampling for biobankc, ending time of parent specimen dissection.c, followup required for specimen collection issuec, genetic characteristics informationc, histologic profile quantitative assessment of tumor slide specimen surface areac, indeterminate serological assay resultc, measurement datumc, medical product expiration datec, name of person receiving specimen shipmentc, negative serological assay resultc, number of FFPE stages/replicatesc, percentage of cross-sectional surface area of entire slide composed of necrotic tissuec, percentage of cross-sectional surface area of entire slide composed of tumor focusc, percentage of gross area of necrosis of a specimen sent to biobankc, percentage of necrotic tumor slide specimen by surface areac, percentage of non-cellular component of tumor slide specimen by surface areac, percentage of tumor cellularity by cell count of the entire slide.c, percentage of tumor content of specimen sent to biobankc, percentage of tumor slide specimen stroma by surface areac, percentage of viable tumor slide specimen by surface areac, physiological measurement datac, positive serological assay resultc, resolved specimen collection issuec, setting datumc, specimen disease state datumc, specimen donor body refrigerated indicatorc, specimen gross appearancec, start date of sampling for biobankc, survey datac, time of blood cell pellet transfer to storagec, time of blood plasma specimen placement on dry icec, time of blood plasma specimen transfer to freezerc, time of blood processingc, time of completion of blood cell pellet processingc, time of first clamp for specimen removalc, time of first surgical incisionc, time of receipt for pathologist processingc, time of receiving specimen transportc, time of second clamp for specimen removalc, time of specimen freezingc, time of specimen placement on dry ice for transportc, time of specimen transfer from pathology gross room to a biobankc, time of specimen transportc, time of surgical ligature for specimen collectionc, time of surgical removal of specimenc, time specimen left operating roomc, time specimen place in stabilizerc, vital sign blood pressure variance early in organ excisionc, vital sign blood pressure variance late in organ excisionc
is in range of
is_supported_by_dataop

data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000100

has super-classes
data itemc
has sub-classes
age data by age bracketsc, centrally registered identifier registryc, patient registry datac

data transformationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200000

is equivalent to
achieves_planned_objectiveop some data transformation objectivec
has super-classes
planned processc
has_specified_inputop only data itemc
realizesop some concretizesop some algorithmc and (has partop some objective specificationc)
has sub-classes
RNA Integrity Number calculationc, averaging data transformationc

data transformation objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200166

has super-classes
objective specificationc
has sub-classes
averaging objectivec

date and time FFPE tissue cassette placed in fixativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000367

has super-classes
data itemc

date and time FFPE tissue cassette placed in processorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000369

has super-classes
data itemc

date and time FFPE tissue cassette removed from processorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000372

has super-classes
data itemc

date and time FFPE tissue cassette transferred to storagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000379

has super-classes
data itemc

date and time FFPE tissue cassette was frozenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000375

has super-classes
data itemc

date and time FFPE tissue embedding startedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000373

has super-classes
data itemc

date and time FFPE tissue processor cycle endedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000370

has super-classes
data itemc

date and time FFPE tissue was preservedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000382

has super-classes
data itemc

date and time of blood collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000229

has super-classes
data itemc

date of birthc back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/efo/EFO_0004950

has super-classes
time measurement datumc
has sub-classes
specimen donor's date of birthc

date of chemotherapy prior to surgeryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000504

has super-classes
data itemc

date of data entryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001004

It is denoted by Date in ISO-standard (8601) time format.
has super-classes
data itemc
data itemc and (is aboutop some one-dimensional temporal regionc and (has partop some one-dimensional temporal regionc and (has temporal occupantop some sample collection data entryc)))
is disjoint with
date of data updatec, end date of sampling for biobankc, start date of sampling for biobankc

date of data updatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001005

It is expressed as a Date in ISO-standard (8601) time format.
has super-classes
data itemc
data itemc and (is aboutop some one-dimensional temporal regionc and (has partop some one-dimensional temporal regionc and (has temporal occupantop some sample collection data updatec)))
is disjoint with
date of data entryc, end date of sampling for biobankc, start date of sampling for biobankc

date of diagnosisc back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/efo/EFO_0004953

has super-classes
time measurement datumc

date of FFPE slide review by the pathologistc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000409

has super-classes
data itemc

date of form data verificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000078

has super-classes
data itemc

date of hormonal therapy prior to surgeryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000506

has super-classes
data itemc

date of immunotherapy prior to surgeryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000505

has super-classes
data itemc

date of radiation therapy prior to surgeryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000503

has super-classes
data itemc

date of receiving specimen transportc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000276

has super-classes
data itemc

date of research authorization verificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000476

has super-classes
data itemc

date of research protocol approval as determined by an institutional review boardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000472

has super-classes
data itemc

date of research protocol expiration as determined by an institutional review boardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000473

has super-classes
data itemc

date of review of pathology case summary reportc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000390

has super-classes
data itemc

date of specimen collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001039

It is denoted by Date in ISO-standard (8601) time format.
has super-classes
data itemc
data itemc and (is aboutop some one-dimensional temporal regionc and (has partop some one-dimensional temporal regionc and (has temporal occupantop some specimen collection processc)))
has sub-classes
date of surgical removal of specimenc, first blood draw datec, first tissue removed datec

date of specimen freezing at -70 to -80 degrees Cc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000269

has super-classes
data itemc

date of specimen placement on dry ice for transportc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000267

has super-classes
data itemc

date of specimen receipt for pathologist processingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000283

has super-classes
data itemc

date of specimen transportc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000270

has super-classes
data itemc

date of submission of pathology case summary reportc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000388

has super-classes
data itemc

date of surgical removal of specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000100

has super-classes
date of specimen collectionc

date on which research authorization was obtained from legally authorized representativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000479

has super-classes
data itemc

date that research authorization for post mortem specimen donation was witnessedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000475

has super-classes
data itemc

datum labelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000009

has super-classes
information content entityc
has sub-classes
measurement unit labelc

daughter clinical history of cancerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002375

has super-classes
family clinical history of cancerc

deadc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001422

has super-classes
viabilityc

defined population inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002460

has super-classes
inclusion criterionc

delivery form for hormonal replacement therapyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002406

has super-classes
processed materialc
has sub-classes
cream delivery form for hormonal replacement therapyc, patch delivery form for hormonal replacement therapyc, pill delivery form for hormonal replacement therapyc

denotator typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000409

is equivalent to
{ defined class , universal , named class expression }
has super-classes
data about an ontology partc
has members
defined classni, named class expressionni, universalni

deoxyribonucleic acidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_16991

has super-classes
nucleic acidc

departmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000017

has super-classes
organizationc
(not (bearer ofop some legal person rolec)) and (is member of organizationop some organizationc and (bearer ofop some legal person rolec))
has sub-classes
department of biobank contactc, department of sample collection or study contactc

department of biobank contactc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000018

is equivalent to
departmentc and (has organization memberop some Homo sapiensc and (is member of organizationop some biobank organizationc) and (bearer ofop some biobank contact rolec))
has super-classes
departmentc

department of sample collection or study contactc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000040

is equivalent to
departmentc and (has organization memberop some Homo sapiensc and (((part ofop some object aggregatec and (administratesop some object aggregatec and (has partop only specimenc))) and (bearer ofop some sample collection or study contact rolec)) or ((bearer ofop some sample collection or study contact rolec) and (participates inop some study design executionc))))
has super-classes
departmentc

descending colonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001158

has super-classes
organ partc

description of glass slide chargec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000323

has super-classes
textual entityc

desired plasma and serum aliquots were obtainedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000443

has super-classes
information content entityc

determination if assay will provide reliable resultsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002201

has super-classes
planned processc

devicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000968

has super-classes
processed materialc
has functionop some functionc
is_specified_output_ofop some material processingc
has sub-classes
automatic tissue processorc, containerc, environmental control devicec, freezer rackc, freezer shelfc, material separation devicec, measurement devicec, medical device c, microtome bladec, needlec

diagnosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000073

has super-classes
data itemc
has sub-classes
comorbidityc, diagnosis of cancerc, diagnosis of infectious diseasec, gross diagnosis of resected tissuec, primary diagnosisc

diagnosis of cancerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002371

has super-classes
diagnosisc

diagnosis of hepatitis Bc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002386

has super-classes
diagnosis of infectious diseasec

diagnosis of hepatitis Cc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002387

has super-classes
diagnosis of infectious diseasec

diagnosis of HIVc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002388

has super-classes
diagnosis of infectious diseasec

diagnosis of infectious diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002385

has super-classes
diagnosisc
has sub-classes
diagnosis of HIVc, diagnosis of hepatitis Bc, diagnosis of hepatitis Cc

diagnostic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000104

has super-classes
planned processc

dialysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600052

has super-classes
material component separationc
achieves_planned_objectiveop some separation into different composition objectivec

diazepamc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_49575

has super-classes
molecular entityc

digestive system fluid or secretion specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002504

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some digestive system secreted substancec))
has super-classes
specimen from organismc

digestive system secreted substancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0006911

has super-classes
organism substancec

digital curationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302914

has super-classes
documentingc

dimensions of each specimen meet the criteria specified within the relevant tissue procurement SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000433

has super-classes
information content entityc

dinitrogen oxidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_17045

has super-classes
molecular entityc

directive information entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000033

has super-classes
information content entityc
is aboutop some realizable entityc
has sub-classes
action specificationc, conditional specificationc, objective specificationc, plan specificationc, selection criterionc

discardingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000011

has super-classes
planned processc
has_specified_outputop some material entityc and (located inop some trash containerc)
has_specified_inputop some material entityc

diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000031

has super-classes
dispositionc
has sub-classes
cancerc

disease specific study designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002615

has super-classes
study designc

diseased state specimen datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_00001010

has super-classes
specimen disease state datumc
is aboutop some specimenc and (has partop some disorderc)

disorderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000045

has super-classes
material entityc

dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000016

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
realizable entityc
has sub-classes
diseasec, functionc, immunosuppressive dispositionc, pathogenic dispositionc, risk factorc
is in range of
has dispositionop
is disjoint with
rolec

DNA extractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001051

has super-classes
nucleic acid extractc
is_specified_output_ofop some DNA extractionc
has grainop some deoxyribonucleic acidc

DNA extractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000257

has super-classes
nucleic acid extractionc
has_specified_outputop some deoxyribonucleic acidc

documentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000310

has super-classes
information content entityc
has sub-classes
edited documentc, genealogical recordc, identity documentc, informed consent formc, medical recordc, obsolete authorization documentc, questionnairec, sample handling summaryc

document editingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302908

has super-classes
planned processc
has_specified_inputop some documentc
has_specified_outputop some edited documentc
has sub-classes
form fillingc

document titlec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000305

has super-classes
textual entityc
has sub-classes
running titlec

documented identityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020022

is an aggregate of ICEs also an ICE? yes Is part_of the appropriate relation to use for data items and documented identities?
has super-classes
information content entityc
(has partop some information content entityc) and (inverse is aboutop some identity documentc) and (has partop only information content entityc)

documentingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000572

has super-classes
planned processc
has_specified_inputop some information content entityc
has_specified_outputop some documentc
has sub-classes
digital curationc

donorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_1110087

has super-classes
rolec

donor patient registry datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001031

has super-classes
patient registry datac
is aboutop some donorc

donor's biological sexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000483

has super-classes
biological sexc

drawing a conclusion based on datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000338

has super-classes
planned processc
has_specified_outputop some conclusion based on datac
has_specified_inputop some data itemc

droperidolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_4717

has super-classes
molecular entityc

dubbing processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020010

is equivalent to
has_specified_outputop some identifierc
has super-classes
planned processc

Duration of fasting by specimen donor prior to surgeryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000150

has super-classes
time measurement datumc

duration of greater than moderate alcohol consumption prior to enrollmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000511

has super-classes
time measurement datumc

duration of hormonal birth control use prior to enrollmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000526

has super-classes
time measurement datumc

duration of hormone replacement therapy prior to enrollmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000529

has super-classes
time measurement datumc

duration time of smokingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000053

has super-classes
time measurement datumc
is duration ofop some smoking behaviorc
has sub-classes
duration time of smoking regularlyc

duration time of smoking regularlyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000041

has super-classes
duration time of smokingc

Eastern Cooperative Oncology Group score value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002357

has super-classes
performance status value specificationc
has members
0: asymptomaticni, 1: symptomatic but fully ambulatoryni, 2: symptomatic but in bed less than 50% of the dayni, 3: symptomatic in bed more than 50% of the day but not bed riddenni, 4: bed riddenni

Eastern Europeanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C77819

has super-classes
Europeanc

EBV IgG antibody assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002152

has super-classes
antigen specific antibodies assayc
(realizesop some analyte rolec and (inheres inop some immunoglobulin complexc and (has disposition to bindop some Human gammaherpesvirus 4c))) and (has_specified_inputop some immunoglobulin complexc and (has disposition to bindop some Human gammaherpesvirus 4c))

EBV IgM antibody assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002153

has super-classes
antigen specific antibodies assayc
(realizesop some analyte rolec and (inheres inop some immunoglobulin complexc and (has disposition to bindop some Human gammaherpesvirus 4c))) and (has_specified_inputop some immunoglobulin complexc and (has disposition to bindop some Human gammaherpesvirus 4c))

edited documentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302874

has super-classes
documentc
is_specified_output_ofop some document editingc

editors ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000002

has super-classes
ontology modulec

EL++ ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000020

has super-classes
ontology module subsetted by OWL profilec

eligibility criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500026

has super-classes
selection criterionc
has sub-classes
exclusion criterionc, inclusion criterionc

eligibility of candidate participationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000146

has super-classes
realizable entityc
has sub-classes
candidate eligible for study rolec, candidate ineligible for study rolec

email addressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000429

has super-classes
information content entityc
has sub-classes
email address of biobank contact personc, email address of sample collection or study contactc

email address of biobank contact personc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000015

is equivalent to
email addressc and (is contact information aboutop some Homo sapiensc and (is member of organizationop some biobank organizationc) and (bearer ofop some biobank contact rolec))
has super-classes
email addressc

email address of sample collection or study contactc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000035

is equivalent to
email addressc and (is contact information aboutop some Homo sapiensc and (((part ofop some object aggregatec) and (administratesop some object aggregatec and (has partop only specimenc))) or ((bearer ofop some sample collection or study contact rolec) and (participates inop some study design executionc))))
has super-classes
email addressc

end date of sampling for biobankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001006

It is denoted by Date in ISO-standard (8601) time format.
has super-classes
data itemc
data itemc and (is aboutop some one-dimensional temporal regionc and (has partop some has temporal occupantop some end of sampling specimens for biobankc))
is disjoint with
date of data entryc, date of data updatec, start date of sampling for biobankc

end of sampling specimens for biobankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001082

has super-classes
process boundaryc
part ofop some sampling specimens for biobankc

ending time of parent specimen dissection.c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000207

has super-classes
data itemc

endocrine glandc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002368

has super-classes
material anatomical entityc

endometrioid ovary carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_5828

has super-classes
ovarian cancerc
has sub-classes
Borderline Ovarian Endometrioid Tumor/Atypical Proliferative Ovarian Endometrioid Tumorc

entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000001

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
thingc
has sub-classes
continuantc, occurrentc
is in domain of
denoted byop
is in range of
denotesop, designatesop

environment control functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000401

has super-classes
functionc

environmental control devicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001034

is equivalent to
devicec and (has functionop some heat functionc or cool functionc or environment control functionc)
has super-classes
devicec
has sub-classes
physical storec

environmental materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00010483

has super-classes
material entityc

environmental swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002613

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen with swabc and (has_specified_inputop some environmental materialc)))
has super-classes
swab specimenc

equipment maintained as per manufacturer recommendationsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000289

has super-classes
information content entityc

erythrocytec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000232

has super-classes
cellc

erythrocyte specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000016

has super-classes
swab specimenc
specimenc and (is_specified_output_ofop some collecting specimen with swabc and (has_specified_inputop some erythrocytec))

esophagogastric junctionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0007650

has super-classes
organ partc

esophagogastric junction muscularis mucosac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0035840

has super-classes
organ partc

esophagogastric junction specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002544

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some esophagogastric junctionc))
has super-classes
specimen from organismc

esophagusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001043

has super-classes
material anatomical entityc

esophagus mucosac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002469

has super-classes
material anatomical entityc
has sub-classes
Mucosa of abdominal part of esophagusc

esophagus mucosa specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002532

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some esophagus mucosac))
has super-classes
specimen from organismc

esophagus muscularis mucosac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0004648

has super-classes
tissuec
has sub-classes
Muscularis mucosae of abdominal part of esophagusc

esophagus muscularis mucosa specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002535

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some esophagus muscularis mucosac))
has super-classes
specimen from organismc

establishing cell culturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600036

A 'cell culture' as used here referes to a new lineage of cells in culture deriving from a single biological source.. New cultures are established through the initial isolation and culturing of cells from an organismal source, or through changes in an existing cell culture or line that result in a new culture with unique characteristics. This can occur through the passaging/selection of a primary culture into a secondary culture or line, or experimental modifications of an existing cell culture or line such as an immortalization process or other stable genetic modification. This class covers establishment of cultures of either multicellular organism cells or unicellular organisms.
has super-classes
material processingc
has_specified_inputop some cellc
achieves_planned_objectiveop some material transformation objectivec
has_specified_inputop some culture mediumc
has_specified_outputop some cultured cell populationc
has sub-classes
establishing cell linec

establishing cell linec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001867

has super-classes
establishing cell culturec
has_specified_outputop some cell linec

estrogen alone hormone replacement therapyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000539

has super-classes
hormone replacement therapyc

estrogen with progestin hormone replacement therapyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000540

has super-classes
hormone replacement therapyc

ethanolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_16236

has super-classes
alcoholc

ethnic groupc back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/efo/EFO_0001799

has super-classes
populationc
has sub-classes
Africanc, Ashkenazi Jewc, Australian/New Zealand Ethnicityc, Nordic, Icelandicc, Sephardic Jewc, mixed ethnicityc, obsolete_Americanc, obsolete_Asianc, obsolete_Hispanicc

ethnic identity information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000205

Contributors:
Amanda Hicks
Mathias Brochhausen
Matthew Diller
Sarah Bost
William R. Hogan
Ethnicity is separate from but related to racial identity. It refers more to identifying with a particular culture than with individuals similar in physical appearance. It includes things like Hispanic ethnicity (which spans many nations) and national cultural identities like Irish and ethnic groups within nations such as Catalan and Armenian.
has super-classes
social identity information content entityc
has sub-classes
OMB ethnic identity information content entityc

ethnicity inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002563

has super-classes
inclusion criterionc

ethylenediaminetetraacetic acidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_42191

has super-classes
molecular entityc
has roleop some blood additive rolec

etomidatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_4910

has super-classes
molecular entityc

Euarchontogliresc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_314146

has super-classes
Mammaliac
has sub-classes
Homo sapiensc

Eukaryotac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2759

has super-classes
organismc
has sub-classes
Opisthokontac, tobaccoc

Europeanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C43851

has super-classes
populationc
has sub-classes
Eastern Europeanc, Western Europeanc

Euteleostomic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_117571

has super-classes
Vertebrata <vertebrates>c
has sub-classes
Tetrapodac

evaluant rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000067

has super-classes
rolec
realized inop only assayc
inheres inop some material entityc

exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500028

has super-classes
eligibility criterionc
has sub-classes
HIV exclusion criterionc, blood transfusion exclusion criterionc, chemotherapy treatment exclusion criterionc, chemotherapy treatment within the recent past exclusion criterionc, exposure to blood borne infectious disease exclusion criterionc, history of metastatic cancer exclusion criterionc, history of sex with someone with a history of blood borne infection exclusion criterionc, history of sex with someone with a history of intravenous drugs exclusion criterionc, intravenous drug use exclusion criterionc, presence of a tumor larger than a specified size exclusion criterionc, presence of metastatic tumor exclusion criterionc, radiation treatment exclusion criteriac, radiation treatment within the recent past exclusion criterionc

exclusion subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000010

has super-classes
subset ontology modulec

experimentally modified cell in vitroc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000578

has super-classes
cellc
processed materialc
is_specified_output_ofop some material processingc
has sub-classes
cultured cellc

explanation of why tumor tissue specimen was not released to a biobankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000429

has super-classes
textual entityc

exposure to arsenic historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002416

has super-classes
exposure to environmental and workplace carcinogens historyc

exposure to asbestos historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002417

has super-classes
exposure to environmental and workplace carcinogens historyc

exposure to blood borne infectious disease exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002435

has super-classes
exclusion criterionc

exposure to chromium historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002419

has super-classes
exposure to environmental and workplace carcinogens historyc

exposure to diesel exhaust historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002418

has super-classes
exposure to environmental and workplace carcinogens historyc

exposure to environmental and workplace carcinogens historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002415

has super-classes
information content entityc
has sub-classes
exposure to arsenic historyc, exposure to asbestos historyc, exposure to chromium historyc, exposure to diesel exhaust historyc, exposure to silica historyc

exposure to second hand smokec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002390

has super-classes
clinical historyc
has sub-classes
exposure to second hand smoke in current householdc, exposure to second hand smoke in household during childhoodc

exposure to second hand smoke in current householdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002392

has super-classes
exposure to second hand smokec

exposure to second hand smoke in household during childhoodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002391

has super-classes
exposure to second hand smokec

exposure to silica historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002420

has super-classes
exposure to environmental and workplace carcinogens historyc

external import ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000011

has super-classes
import ontology modulec

extractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000423

has super-classes
processed materialc
is_specified_output_ofop some extractionc
has sub-classes
nucleic acid extractc

extractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302884

has super-classes
material component separationc
achieves_planned_objectiveop some separation into different composition objectivec
has sub-classes
nucleic acid extractionc

eyec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000970

has super-classes
material anatomical entityc

eye specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000004

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some eyec))
has super-classes
specimen from organismc

fallopian tubec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0003889

has super-classes
organ partc

familial adenomatous polyposis colorectal cancer risk factorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000538

has super-classes
colorectal cancer risk factorc

family clinical history of cancerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002372

has super-classes
clinical historyc
has sub-classes
aunt clinical history of cancerc, brother clinical history of cancerc, daughter clinical history of cancerc, father clinical history of cancerc, grandfather clinical history of cancerc, grandmother clinical history of cancerc, mother clinical history of cancerc, nephew clinical history of cancerc, niece clinical history of cancerc, sister clinical history of cancerc, son clinical history of cancerc, uncle clinical history of cancerc

family namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020017

has super-classes
personal namec

family relationshipc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ERO_0002033

has super-classes
specifically dependent continuantc
has sub-classes
biological family relationshipc, relationship by marriagec

family status inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002560

has super-classes
inclusion criterionc

father clinical history of cancerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002376

has super-classes
family clinical history of cancerc

fecal swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002612

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen with swabc and (has_specified_inputop some fecesc)))
has super-classes
swab specimenc

fecesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001988

has super-classes
organism substancec
has sub-classes
meconiumc

feces specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002503

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some fecesc))
has super-classes
specimen from organismc
has sub-classes
meconium specimenc

female gender identity information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000210

Contributors:
Amanda Hicks
Mathias Brochhausen
Matthew Diller
Sarah Bost
William R. Hogan
has super-classes
gender identity information content entityc

fentanylc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_119915

has super-classes
molecular entityc

FFPE alcohol stage durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000293

has super-classes
time measurement datumc

FFPE clearing agent durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000301

has super-classes
time measurement datumc

FFPE clearing agent rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000291

has super-classes
rolec

FFPE clearing agent temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000303

has super-classes
scalar measurement datumc

FFPE dehydration process durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000295

has super-classes
time measurement datumc

FFPE dehydration process temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000297

has super-classes
scalar measurement datumc

FFPE fixation delay protocolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000364

has super-classes
FFPE fixation protocolc

FFPE fixation protocolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000363

has super-classes
protocolc
has sub-classes
FFPE fixation delay protocolc

FFPE freezing by dry ice protocolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000377

has super-classes
protocolc

FFPE freezing by LN2 vapor phase protocolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000378

has super-classes
protocolc

FFPE freezing protocolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000376

has super-classes
protocolc

FFPE paraffin impregnation methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000305

has super-classes
protocolc

FFPE paraffin processing for embedding temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000310

has super-classes
scalar measurement datumc

FFPE paraffin temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000307

has super-classes
scalar measurement datumc

FFPE slide consistent with findings of diagnostic pathology reportc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000406

has super-classes
information content entityc

FFPE slide findings that do not meet microscopic analysis criteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000404

has super-classes
textual entityc

FFPE slide inconsistencies with findings of diagnostic pathology reportc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000407

has super-classes
textual entityc

FFPE slide meets necrosis percentage and tumor content criteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000403

has super-classes
information content entityc

FFPE specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_1200000

has super-classes
paraffin specimenc

FFPE tissue block handling, tracking, and storage SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000314

has super-classes
standard operating procedurec

FFPE tissue cassette IDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000365

has super-classes
specimen IDc

FFPE tissue paraffin embedding SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000309

has super-classes
standard operating procedurec

FFPE tissue processing SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000288

has super-classes
standard operating procedurec

FFPE tissue section H&E clearing protocolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000339

has super-classes
protocolc

FFPE tissue section H&E cover slip protocolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000340

has super-classes
protocolc

FFPE tissue section H&E deparaffinization protocolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000337

has super-classes
protocolc

FFPE tissue section H&E staining and mounting SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000334

has super-classes
standard operating procedurec

FFPE tissue section H&E staining in oven durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000335

has super-classes
time measurement datumc

FFPE tissue section H&E staining protocolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000338

has super-classes
protocolc

FFPE tissue section preparation SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000319

has super-classes
standard operating procedurec

FFPE water bath temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000326

has super-classes
scalar measurement datumc

fiat object partc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000024

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
material entityc

figurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000308

has super-classes
information content entityc
has sub-classes
imagec

filled data confirm questionnairec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000027

has super-classes
data confirm questionnairec
is_specified_output_ofop some form fillingc and (has_specified_inputop some data confirm questionnairec) and (has participantop some Homo sapiensc and (has roleop some human subject recuiter rolec))

filled patient questionnairec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000019

has super-classes
patient questionnairec
is_specified_output_ofop some form fillingc and (has_specified_inputop some patient questionnairec) and (has participantop some Homo sapiensc and (has roleop some patient rolec))

filter functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000378

has super-classes
material separation functionc

filter paperc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000151

has super-classes
material separation devicec
has functionop some filter functionc

filtrationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302885

has super-classes
material component separationc
has participantop some filter paperc
achieves_planned_objectiveop some separation into different composition objectivec

fine needle aspiration biopsyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002655

has super-classes
needle biopsyc

first blood draw datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000076

has super-classes
date of specimen collectionc

first blood draw timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000080

has super-classes
blood draw timec

first temperature recorded in operating room of specimen donorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000134

has super-classes
time stamped measurement datumc

first tissue removed datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000077

has super-classes
date of specimen collectionc

first tissue removed timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000081

has super-classes
time of surgical removal of specimenc

fixationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000911

The choice of fixation depends on the type of study.
has super-classes
material processingc

fixativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_50913

has super-classes
rolec

fixative product manufacturerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000216

has super-classes
manufacturerc

fixed tissue block specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000051

has super-classes
fixed tissue specimenc

fixed tissue slide specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000052

has super-classes
fixed tissue specimenc
has sub-classes
H&E-stained fixed tissue slide specimenc, IHC-stained fixed tissue slide specimenc

fixed tissue specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000050

has super-classes
processed specimenc
is_specified_output_ofop some fixationc
has sub-classes
fixed tissue block specimenc, fixed tissue slide specimenc

flash frozen specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000053

has super-classes
frozen specimenc

follow-up on donor outcome comment from tissue procurementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000439

has super-classes
comment from tissue procurementc

followup required for specimen collection issuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000088

has super-classes
data itemc

form data verification processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000083

has super-classes
planned processc

form fillingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000018

has super-classes
document editingc

formaldehydec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_16842

has super-classes
molecular entityc

freezerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ERO_0000979

has super-classes
containerc
has partop some freezer shelfc
has partop some freezer rackc
has functionop some contain functionc

freezer rackc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000015

has super-classes
devicec
has functionop some solid support functionc

freezer shelfc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000010

has super-classes
devicec
has functionop some solid support functionc

freezing storagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000915

has super-classes
storagec
achieves_planned_objectiveop some material maintenance objectivec
(has_specified_inputop some material entityc and (has qualityop some frozenc)) and (has_specified_outputop some material entityc and (has qualityop some frozenc))
has sub-classes
specimen freezingc

fresh buffered formalin conditionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000221

has super-classes
buffered formalin conditionc

fresh microtome bladec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000321

has super-classes
microtome blade agec

fresh paraffinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000311

has super-classes
Paraffinc

fresh specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000971

has super-classes
specimen with known storage statec
has sub-classes
fresh tissue specimenc

fresh tissue specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000054

has super-classes
fresh specimenc

fresh venous needle blood specimen collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000237

has super-classes
blood specimen collectionc

frozenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001985

has super-classes
temperaturec

frozen specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000922

is equivalent to
(is_specified_output_ofop some freezing storagec and (has_specified_inputop some has roleop some specimen rolec)) and (has roleop some specimen rolec)
has super-classes
specimen with known storage statec
has sub-classes
flash frozen specimenc, frozen tissue block specimenc, frozen tissue slide specimenc

frozen tissue block specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000055

has super-classes
frozen specimenc

frozen tissue slide specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000056

has super-classes
frozen specimenc

functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000034

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
dispositionc
has sub-classes
contain functionc, cool functionc, environment control functionc, heat functionc, material separation functionc, measure functionc, mechanical functionc, reagent application functionc, solid support functionc, transfer functionc
is in domain of
function ofop
is in range of
has functionop

gastrocnemiusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001388

has super-classes
skeletal muscle tissuec

gender identity information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000209

Contributors:
Amanda Hicks
Mathias Brochhausen
Matthew Diller
Sarah Bost
William R. Hogan
has super-classes
social identity information content entityc
has sub-classes
female gender identity information content entityc, male gender identity information content entityc, non-binary identity information content entityc

genealogical recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002616

has super-classes
documentc

generated ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000014

has super-classes
ontology modulec
has sub-classes
template generated ontology modulec

generically dependent continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000031

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
continuantc
has sub-classes
information content entityc, regionc
is in domain of
is concretized asop
is in range of
concretizesop
is disjoint with
independent continuantc, specifically dependent continuantc

genetic characteristics informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001404

has super-classes
data itemc
is aboutop some regionc and (is concretized asop some inheres inop some nucleic acidc and (part ofop some organismc))

geographic locationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00000448

has super-classes
sitec
is also defined as
named individual

geographical entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000102

has super-classes
objectc
has sub-classes
geographical regionc

geographical regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000151

has super-classes
geographical entityc

geopolitical dependencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000006

Typically, the common feature is that the dependency does not conduct foreign affairs, and relegates this authority to the sovereign state. But otherwise, it is largely or completely autonomous relative to the administrative subdivisions. Examples include Puerto Rico (U.S.), Guam (U.S.), Greenland (Denmark), French Polynesia (France), and Falkland Islands (United Kingdom).
has super-classes
subnational entityc

given namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020016

has super-classes
personal namec

governmental organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000400

IMPORTANT: The label "geopolitical organization" was previously used for OMRSE_00000044 (governmental organization). "geopoli organization" is a label for a new and different class.
has super-classes
organizationc
has sub-classes
sovereign statec, subnational entityc

grandfather clinical history of cancerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002382

has super-classes
family clinical history of cancerc

grandmother clinical history of cancerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002381

has super-classes
family clinical history of cancerc

granulosa cell tumorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_2999

has super-classes
ovarian cancerc

gravidity inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002456

has super-classes
inclusion criterionc

greater omentumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0005448

has super-classes
omentumc

greater than moderate alcohol consumption historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000510

has super-classes
Alcohol Use Historyc

greatest tumor dimension on slidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000392

has super-classes
length measurement datumc

gross appearance of disease in resected tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000421

has super-classes
information content entityc

gross diagnosis of resected tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000423

has super-classes
diagnosisc

GXc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002202

has super-classes
cannot be assessed determinationc

gynecologic surgery historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002397

has super-classes
clinical historyc
has sub-classes
hysterectomy historyc, neither hysterectomy nor oophorectomy historyc, unilateral oophorectomy historyc

H&E slide stainingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002124

has super-classes
stainingc
stainingc and (has_specified_inputop some fixed tissue slide specimenc)

H&E staining equipment maintenance performed and recorded frequencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000346

has super-classes
data itemc

H&E staining equipment maintenance performed and recorded frequency value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000347

has super-classes
categorical value specificationc

H&E-stained fixed tissue slide specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002125

has super-classes
fixed tissue slide specimenc
fixed tissue slide specimenc and (is_specified_output_ofop some H&E slide stainingc)

hair specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002517

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some strand of hairc))
has super-classes
specimen from organismc

HBV surface antigen assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002157

has super-classes
analyte assayc
(realizesop some analyte rolec and (inheres inop some Hepatitis B virusc)) and (has_specified_inputop some Hepatitis B virusc)

HCV antibody assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002151

has super-classes
antigen specific antibodies assayc
(realizesop some analyte rolec and (inheres inop some immunoglobulin complexc and (has disposition to bindop some Hepacivirus Cc))) and (has_specified_inputop some immunoglobulin complexc and (has disposition to bindop some Hepacivirus Cc))

HCV nucleic acid testingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002159

has super-classes
analyte assayc
(realizesop some analyte rolec and (inheres inop some nucleic acidc and (part ofop some Hepacivirus Cc))) and (has_specified_inputop some nucleic acidc and (part ofop some Hepacivirus Cc))

health care encounterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000097

has super-classes
planned processc

health care provider rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000012

William R. Hogan
has super-classes
human health care rolec
(inheres inop some Homo sapiensc or organizationc) and (inheres inop only Homo sapiensc or organizationc)
has sub-classes
anesthesiologist rolec, nurse rolec, operating room technicianc, phlebotomist rolec

health status inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002453

has super-classes
inclusion criterionc

heartc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000948

has super-classes
material anatomical entityc

heart left ventriclec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002084

has super-classes
organ partc

heart specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002520

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some heartc))
has super-classes
specimen from organismc

heat functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000371

has super-classes
functionc

heightc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000119

has super-classes
sizec

Hepacivirus Cc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11103

has super-classes
Virusesc

hepatic flexure of colonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0022277

has super-classes
organ partc

Hepatitis B virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10407

has super-classes
Virusesc

Herpesviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10292

has super-classes
Virusesc
has sub-classes
Cytomegalovirusc, Human gammaherpesvirus 4c

high meat diet colorectal cancer risk factorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000534

has super-classes
colorectal cancer risk factorc

histologic grade according to AJCC 7th editionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002205

has super-classes
categorical value specificationc
has members
G1: Well differentiatedni, G2: Moderately differentiatedni, G3: Poorly differentiatedni, G4: Undifferentiatedni

histologic grade according to the Fuhrman Nuclear Grading Systemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002210

has super-classes
categorical value specificationc
has members
G1 (Fuhrman)ni, G2 (Fuhrman)ni, G3 (Fuhrman)ni, G4 (Fuhrman)ni

histologic grade for ovarian tumorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002215

has super-classes
categorical value specificationc
has sub-classes
histologic grade for ovarian tumor according to a two-tier grading systemc, histologic grade for ovarian tumor according to the World Health Organizationc

histologic grade for ovarian tumor according to a two-tier grading systemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002216

has super-classes
histologic grade for ovarian tumorc
has members
High grade ovarian tumorni, Low grade ovarian tumorni

histologic grade for ovarian tumor according to the World Health Organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002219

has super-classes
histologic grade for ovarian tumorc
has members
G1 (WHO)ni, G2 (WHO)ni, G3 (WHO)ni, G4 (WHO)ni

histologic profile quantitative assessment of tumor slide specimen surface areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000396

has super-classes
data itemc

historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000182

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
processc
is disjoint with
process profilec

history of metastatic cancer exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002430

has super-classes
exclusion criterionc

history of sex with someone with a history of blood borne infection exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002432

has super-classes
exclusion criterionc

history of sex with someone with a history of intravenous drugs exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002433

has super-classes
exclusion criterionc

HIV antibody assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002146

has super-classes
antigen specific antibodies assayc
(realizesop some analyte rolec and (inheres inop some immunoglobulin complexc and (has disposition to bindop some Human immunodeficiency virus 1c or Human immunodeficiency virus 2c))) and (has_specified_inputop some immunoglobulin complexc and (has disposition to bindop some Human immunodeficiency virus 1c or Human immunodeficiency virus 2c))

HIV exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002434

has super-classes
exclusion criterionc

HIV group O antibody assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002147

has super-classes
antigen specific antibodies assayc
(realizesop some analyte rolec and (inheres inop some immunoglobulin complexc and (has disposition to bindop some Human immunodeficiency virus 1c or Human immunodeficiency virus 2c or HIV-1 group Oc))) and (has_specified_inputop some immunoglobulin complexc and (has disposition to bindop some Human immunodeficiency virus 1c or Human immunodeficiency virus 2c or HIV-1 group Oc))

HIV-1 group Oc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_388799

has super-classes
Human immunodeficiency virus 1c

HIV-1 nucleic acid testingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002158

has super-classes
analyte assayc
(realizesop some analyte rolec and (inheres inop some nucleic acidc and (part ofop some Human immunodeficiency virus 1c))) and (has_specified_inputop some nucleic acidc and (part ofop some Human immunodeficiency virus 1c))

Homo sapiensc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9606

has super-classes
Euarchontogliresc
has sub-classes
biobank contact personc, sample collection or study contact personc, specimen donorc

hormonal birth control current use historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002403

has super-classes
hormonal birth control use historyc

hormonal birth control former use historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002402

has super-classes
hormonal birth control use historyc

hormonal birth control use historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002401

has super-classes
information content entityc
has sub-classes
hormonal birth control current use historyc, hormonal birth control former use historyc, no hormonal birth control use historyc

hormonal replacement therapy historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002405

has super-classes
clinical historyc

hormone replacement therapyc back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/efo/EFO_0003961

has super-classes
treatmentc
has sub-classes
estrogen alone hormone replacement therapyc, estrogen with progestin hormone replacement therapyc, progestin alone hormone replacement therapyc, testosterone hormone replacement therapyc

hospital patient inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002559

has super-classes
inclusion criterionc

hosted study collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000033

is equivalent to
(object aggregatec and (has partop only specimenc)) and (part ofop some biobankc) and (participates inop some study design executionc)
has super-classes
object aggregatec
collection of specimensc

hosting biobankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001078

is equivalent to
biobankc and (participates inop some specimen collection processc and (part ofop some study design executionc))
has super-classes
biobankc

human biobankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000001

has super-classes
biobankc

human brain biobankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000355

has super-classes
biobankc

Human gammaherpesvirus 4c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10376

has super-classes
Herpesviridaec

human health care rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000010

Mathias Brochhausen
has super-classes
role in human social processesc
realized inop some health care encounterc
has sub-classes
health care provider rolec

Human immunodeficiency virus 1c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11676

has super-classes
Lentivirusc
has sub-classes
HIV-1 group Oc

Human immunodeficiency virus 2c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11709

has super-classes
Lentivirusc

human subject enrollmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600004

has super-classes
selectionc
has_specified_inputop some populationc and (has partop some Homo sapiensc)
has_specified_outputop some (populationc and (has partop some Homo sapiensc)) and (has roleop some participant under investigation rolec)
has partop some informed consent processc
realizesop some concretizesop some eligibility criterionc

human subject recuiter rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000012

has super-classes
worker rolec

humidityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0015009

has super-classes
physical qualityc

humidity in gross room when specimen arrived from ORc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000418

has super-classes
measurement datumc

humidity in lab when blood specimen was receivedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000242

has super-classes
measurement datumc

hydromorphonec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_5790

has super-classes
molecular entityc

hysterectomy historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002398

has super-classes
gynecologic surgery historyc

hysterectomy with bilateral salpingo-oophorectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000154

has super-classes
surgical procedurec

hysterectomy with left salpingo-oophorectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000155

has super-classes
surgical procedurec

hysterectomy with right salpingo-oophorectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000156

has super-classes
surgical procedurec

identification number of a protocol at a particular sitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000474

has super-classes
centrally registered identifier symbolc

identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020000

Sep 29, 2016: The current definition has been amended from the previous version: "A proper name is an information content entity that is the outcome of a dubbing process and is used to refer to one instance of entity shared by a group of people to refer to that individual entity." to more accuratly reflect the necessary and sufficient condition on the class. (MB)
is equivalent to
(designatesop some entityc) and (is_specified_output_ofop only dubbing processc)
has super-classes
information content entityc
has sub-classes
CTEP organization identifierc, ISO 3166-1 alpha-2 codec, ORCIDc, biobank proper namec, case IDc, collection packet component IDc, collection packet identifierc, conical centrifuge tube identifierc, identifier for legally authorized representativec, personal namec, post-office box numberc, postal codec, sample collection identifierc, specimen IDc, specimen image IDc, specimen slide IDc, study proper namec

identifier for legally authorized representativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000480

has super-classes
identifierc

identity documentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020021

is equivalent to
documentc and (is aboutop some documented identityc) and (is concretized asop some specifically dependent continuantc and (inheres inop some bearer ofop some credential rolec)) and (is concretized asop only specifically dependent continuantc and (inheres inop some bearer ofop some credential rolec))
has super-classes
documentc

IHC slide stainingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002123

has super-classes
stainingc
stainingc and (has_specified_inputop some fixed tissue slide specimenc)

IHC-stained fixed tissue slide specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002126

has super-classes
fixed tissue slide specimenc
fixed tissue slide specimenc and (is_specified_output_ofop some IHC slide stainingc)

ileumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002116

has super-classes
organ partc

ileum specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002545

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some ileumc))
has super-classes
specimen from organismc

imagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000101

has super-classes
figurec

image acquisition functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000397

has super-classes
measure functionc
realized inop only image creationc
inheres inop some image creation devicec

image creationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001007

has super-classes
planned processc
has_specified_inputop some material entityc
has_specified_outputop some imagec

image creation devicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000398

is equivalent to
devicec and (has functionop some image acquisition functionc)
has super-classes
measurement devicec
has sub-classes
computed tomography scannerc

image guided biopsyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002651

has super-classes
needle biopsyc
has sub-classes
computed tomography assisted biopsyc, ultrasound-guided needle biopsyc

immaterial entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000141

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
independent continuantc
has sub-classes
Anatomical locationc, continuant fiat boundaryc, sitec, spatial regionc
is in range of
has 2D boundaryop
is disjoint with
material entityc

immortal cell linec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CLO_0009828

has super-classes
cell linec
has grainop some immortal cell line cellc
has grainop only immortal cell line cellc

immortal cell line cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CLO_0000019

has super-classes
cell line cellc

immune responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0006955

has super-classes
biological_processc

immunoglobulin complexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0019814

has super-classes
protein-containing complexc

immunosuppressed human experiencing chronic systemic steroid use-based immunosuppressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0001013

has super-classes
immunosuppressed organismc

immunosuppressed human experiencing drug-based immunosuppression due to organ transplantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0001014

has super-classes
immunosuppressed organismc

immunosuppressed human experiencing HIV-based immunosuppressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0001008

has super-classes
immunosuppressed organismc

immunosuppressed organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000456

is equivalent to
organismc and (participates inop some pathologic immunosuppressionc or pregnancy-induced immunosuppressionc)
has super-classes
organismc
has sub-classes
immunosuppressed human experiencing HIV-based immunosuppressionc, immunosuppressed human experiencing chronic systemic steroid use-based immunosuppressionc, immunosuppressed human experiencing drug-based immunosuppression due to organ transplantc

immunosuppressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000610

is equivalent to
processc and (negatively regulatesop some immune responsec)
has super-classes
processc
has sub-classes
pathologic immunosuppressionc, pregnancy-induced immunosuppressionc

immunosuppressive dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000619

has super-classes
dispositionc

import ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000005

has super-classes
subset ontology modulec
has sub-classes
external import ontology modulec

in vitro transcriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ERO_0000905

has super-classes
material processingc

in vivo intraoperative ischemic periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000131

has super-classes
time measurement datumc

in-house manufacturerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000218

has super-classes
manufacturerc

inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500027

has super-classes
eligibility criterionc
has sub-classes
BMI range inclusion criterionc, age group inclusion criterionc, age of majority inclusion criterionc, authorization to collect of minimum number of organ/tissue types for a specific study inclusion criterionc, clinically relevant exposure inclusion criterionc, clinically relevant lifestyle inclusion criterionc, country of residence inclusion criteriac, defined population inclusion criterionc, ethnicity inclusion criterionc, family status inclusion criterionc, gravidity inclusion criterionc, health status inclusion criterionc, hospital patient inclusion criterionc, sex inclusion criterionc, tissue collection timing and placed in fixative inclusion criterionc, use of medication inclusion criterionc

independent continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000004

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
continuantc
has sub-classes
immaterial entityc, material entityc
is in domain of
derives fromop, has dispositionop, has functionop, has roleop, located inop
is in range of
derives fromop, located inop, occurs inop
is disjoint with
specifically dependent continuantc, generically dependent continuantc

indeterminate menopausal statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002411

has super-classes
menopausal statusc

indeterminate serological assay resultc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000098

has super-classes
data itemc

indication of a tattoo from unregulated tattoo parlorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000608

has super-classes
information content entityc

indication of body piercing from non-professionalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000612

has super-classes
information content entityc

indication of having lived in the United Kingdom during specific time framec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000611

has super-classes
information content entityc

indication of having resided in a Northern European military basec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000604

has super-classes
information content entityc

indication of having resided in Europe during a specific time framec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000605

has super-classes
information content entityc

indication of having resided in Europe during specific time framec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000615

has super-classes
information content entityc

indication of heroin usec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000569

has super-classes
information content entityc

indication of illegal prescription drug usec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000609

has super-classes
information content entityc

indication of intravenous drug usec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000610

has super-classes
information content entityc

indication of male homosexual sexual activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000571

has super-classes
information content entityc

indication of performing sexual acts in exchange for money or drugsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000606

has super-classes
information content entityc

Indication of recent cocaine usec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000570

has super-classes
information content entityc

indication of residence in state-run group home at time of deathc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000614

has super-classes
information content entityc

indication of tattoo from non-professionalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000613

has super-classes
information content entityc

indication of time in jailc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000607

has super-classes
information content entityc

indicator of ascites fluid collection during surgeryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000148

has super-classes
information content entityc

indicator of collected and banked pre-operative blood specimensc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000194

has super-classes
information content entityc

indicator of pelvic washings collected during ovarian surgeryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000172

has super-classes
information content entityc

indicator of whether all inclusion criteria were metc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002422

has super-classes
information content entityc

indicator of whether an inclusion criterion was metc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002421

has super-classes
information content entityc

indicator of whether specimen donor has reached the age of majorityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000486

has super-classes
information content entityc

induced sputum specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002746

has super-classes
sputum specimenc
specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some sputumc)

information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000030

has super-classes
generically dependent continuantc
is aboutop some entityc
has sub-classes
Alcohol Use Historyc, FFPE slide consistent with findings of diagnostic pathology reportc, FFPE slide meets necrosis percentage and tumor content criteriac, Indication of recent cocaine usec, Tobacco Smoking Historyc, activity related to a particular specimen donor was stopped.c, additional tumor specimen was obtained and processed with a particular FFPE fixation delay protocolc, adherence of alcohol stage duration to FFPE tissue processing SOPc, adherence of dehydration process duration to FFPE tissue processing SOPc, adherence of dehydration process temperature to FFPE tissue processing SOPc, adherence of duration in clearing agent to FFPE tissue processing SOPc, adherence of paraffin temperature to FFPE tissue processing SOPc, adherence of stage and replicate numbers to FFPE tissue processing SOPc, adherence of temperature of clearing agent to FFPE tissue processing SOPc, adherence to FFPE tissue block storage SOPc, adherence to paraffin impregnation method in FFPE tissue processing SOPc, age interval informationc, all requirements for an investigation are met enabling release of specimen for shipment.c, an indication of illegal injectable drug usec, approval to proceed with collectionc, centrally registered identifierc, charged glass slide indicatorc, clinical historyc, conclusion based on datac, confirmation of histologic type of FFPE H&E tumor slidec, data itemc, datum labelc, desired plasma and serum aliquots were obtainedc, dimensions of each specimen meet the criteria specified within the relevant tissue procurement SOPc, directive information entityc, documentc, documented identityc, email addressc, equipment maintained as per manufacturer recommendationsc, exposure to environmental and workplace carcinogens historyc, figurec, gross appearance of disease in resected tissuec, hormonal birth control use historyc, identifierc, indication of a tattoo from unregulated tattoo parlorc, indication of body piercing from non-professionalc, indication of having lived in the United Kingdom during specific time framec, indication of having resided in Europe during a specific time framec, indication of having resided in Europe during specific time framec, indication of having resided in a Northern European military basec, indication of heroin usec, indication of illegal prescription drug usec, indication of intravenous drug usec, indication of male homosexual sexual activityc, indication of performing sexual acts in exchange for money or drugsc, indication of residence in state-run group home at time of deathc, indication of tattoo from non-professionalc, indication of time in jailc, indicator of ascites fluid collection during surgeryc, indicator of collected and banked pre-operative blood specimensc, indicator of pelvic washings collected during ovarian surgeryc, indicator of whether all inclusion criteria were metc, indicator of whether an inclusion criterion was metc, indicator of whether specimen donor has reached the age of majorityc, local pathology review of QC FFPE tumor tissue H&E slide was completedc, local pathology review was consistent with site of tissue procurement diagnostic pathology reportc, menopausal statusc, microtome maintenance frequencyc, minimum required pre-operative RNA and DNA PAXgene tubes were collectedc, minimum required pre-operative blood tubes collectedc, national registryc, no recurrence of tumorc, non-performance of an assayc, normal adjacent tissue released to the biobank in addition to tumor tissuec, participant signed and dated informed consent formc, pathology ink used on resected tissue specimenc, photograph of tissue was taken in pathology gross roomc, presence of gross hemolysis of plasma observedc, presence of sarcomatoid features on specimen slidec, reason for lack of data itemc, record of missing knowledgec, research authorization for post mortem specimen donation was obtainedc, second piece of tumor tissue was collectedc, social identity information content entityc, specimen donor clinical data entry was completedc, specimen shipment received in good conditionc, specimen shipment received in poor conditionc, specimen transport from OR to gross room was performed as per SOPc, specimen was collected and stored in accordance with the specified SOPc, specimen was processed in accordance with the specified SOPc, symbolc, textual entityc, top priority tumor specimen was obtained and processed with a particular FFPE fixation delay protocolc, tumor specimen satisfied criteria of necrosis percentage and tumor contentc, tumor tissue was released to the biobankc, uncharged glass slide indicatorc, value specificationc, water bath maintenance frequencyc, willingness to be contacted for a research studyc
is in domain of
denotesop, designatesop, has value specificationop, is aboutop, is contact information aboutop
is in range of
denoted byop

informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000001

has super-classes
documentc
has sub-classes
completely filled informed consent formc, partially filled informed consent formc

informed consent processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000810

has super-classes
planned processc
has participantop some has roleop some investigation agent rolec
has_specified_inputop some Homo sapiensc

inhalation anaestheticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_38870

has super-classes
anaestheticc

injection-based hormonal birth control methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000522

has super-classes
Birth Control Methodc

ink used for marking surgical marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000427

has super-classes
processed materialc

insulin gene translation productc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PR_000009054

has super-classes
proteinc

integumentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002199

has super-classes
material anatomical entityc

internal body temperature measurement assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000063

has super-classes
temperature measurement assayc
has sub-classes
anesthesia probe temperature measurement assayc, organ temperature measurement assayc, rectal temperature measurement assayc

International Federation of Gynecology and Obstetrics cervical cancer stage value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002326

has super-classes
categorical value specificationc
has members
Stage IA (FIGO)ni, Stage IA1 (FIGO)ni, Stage IA2 (FIGO)ni, Stage IB (FIGO)ni, Stage IB1 (FIGO)ni, Stage IB2 (FIGO)ni, Stage IIA (FIGO)ni, Stage IIA1 (FIGO)ni, Stage IIA2 (FIGO)ni, Stage IIB (FIGO)ni, Stage IIIA (FIGO)ni, Stage IIIB (FIGO)ni, Stage IVA (FIGO)ni, Stage IVB (FIGO)ni

International Federation of Gynecology and Obstetrics ovarian cancer stage value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002341

has super-classes
categorical value specificationc
has members
Stage 1 (FIGO)ni, Stage 1A (FIGO)ni, Stage 1B (FIGO)ni, Stage 1C (FIGO)ni, Stage 2 (FIGO)ni, Stage 2A (FIGO)ni, Stage 2B (FIGO)ni, Stage 2C (FIGO)ni, Stage 3 (FIGO)ni, Stage 3A (FIGO)ni, Stage 3B (FIGO)ni, Stage 3C (FIGO)ni, Stage 4 (FIGO)ni, Stage Unknown (FIGO)ni

intra-settlement specification part of addressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000031

is equivalent to
textual entityc and (part ofop some postal addressc) and (has partop some identifierc and (designatesop some post-office boxc or streetc))
has super-classes
textual entityc
has sub-classes
intra-settlement specification part of address of biobank contactc, intra-settlement specification part of address of sample collection or study contactc

intra-settlement specification part of address of biobank contactc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000032

is equivalent to
intra-settlement specification part of addressc and (part ofop some postal addressc and (is contact information aboutop some Homo sapiensc and (is member of organizationop some biobank organizationc) and (bearer ofop some biobank contact rolec)))
has super-classes
intra-settlement specification part of addressc

intra-settlement specification part of address of sample collection or study contactc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000043

is equivalent to
intra-settlement specification part of addressc and (part ofop some postal addressc and (is contact information aboutop some Homo sapiensc and (((part ofop some object aggregatec) and (administratesop some object aggregatec and (has partop only specimenc))) or ((bearer ofop some sample collection or study contact rolec) and (participates inop some study design executionc)))))
has super-classes
intra-settlement specification part of addressc

intrauterine device-based hormonal birth control methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000523

has super-classes
Birth Control Methodc

intravenous administration of muscle relaxantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000110

has super-classes
planned processc

intravenous administration of opioid analgesicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000109

has super-classes
planned processc

intravenous anaestheticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_38877

has super-classes
anaestheticc

intravenous drug use exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002431

has super-classes
exclusion criterionc

investigationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000066

has super-classes
planned processc
has partop some planningc and (has_specified_outputop some study designc)
has partop some documentingc
has partop some drawing a conclusion based on datac
has partop some study design executionc

investigation agent rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000202

Philly2013: Historically, this role would have been borne only by humans or organizations. However, we now also want to enable investigations run by robot scientists such as ADAM (King et al, Science, 2009)
is equivalent to
rolec and (inheres inop some bearer ofop some concretizesop some objective_achieved_byop some part ofop some investigationc)
has super-classes
rolec
realized inop only investigationc
has sub-classes
responsible party rolec, worker rolec

ISO 3166-1 alpha-2 codec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000004

Two-letter country codes defined in ISO 3166-1, part of the ISO 3166 standard published by the International Organization for Standardization (ISO), to designate countries, dependent territories, and special areas of geographical interest.
has super-classes
identifierc
designatesop some geopolitical dependencyc or sovereign statec
has sub-classes
ISO 3166-1 alpha-2 code for biobank contact personc, ISO 3166-1 alpha-2 code for sample collection or study contactc, biobank location ISO 3166-1 alpha-2 codec

ISO 3166-1 alpha-2 code for biobank contact personc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000028

is equivalent to
ISO 3166-1 alpha-2 codec and (part ofop some postal addressc and (is contact information aboutop some Homo sapiensc and (is member of organizationop some biobank organizationc) and (bearer ofop some biobank contact rolec)))
has super-classes
ISO 3166-1 alpha-2 codec

ISO 3166-1 alpha-2 code for sample collection or study contactc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000007

is equivalent to
ISO 3166-1 alpha-2 codec and (part ofop some postal addressc and (is contact information aboutop some Homo sapiensc and (((part ofop some object aggregatec) and (administratesop some object aggregatec and (has partop only specimenc))) or ((bearer ofop some sample collection or study contact rolec) and (participates inop some study design executionc)))))
has super-classes
ISO 3166-1 alpha-2 codec

isofluranec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_6015

has super-classes
molecular entityc

Karnofsky score vaue specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002363

has super-classes
performance status value specificationc
has members
100: asymptomaticni, 40-50: symptomatic, in bed more than 50% of the day, but not bed riddenni, 60-70: symptomatic but in bed less than 50% of the dayni, 80-90: symptomatic but fully ambulatoryni

ketaminec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_6121

has super-classes
molecular entityc

kidneyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002113

has super-classes
material anatomical entityc
has sub-classes
left kidneyc, right kidneyc

lab technician rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000023

has super-classes
worker rolec

Laboratoryc back to ToC or Class ToC

IRI: http://vivoweb.org/ontology/core#Laboratory

has super-classes
organizationc
has sub-classes
laboratory, data analysis, and coordinating center for human specimensc, pathology research centerc

laboratory, data analysis, and coordinating center for human specimensc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000357

has super-classes
Laboratoryc

laparoscopic surgical methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000168

has super-classes
surgical methodc

laparoscopically assisted vaginal surgical methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000169

has super-classes
surgical methodc

large intestinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000059

has super-classes
organ partc

Latino, Carribeanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ERO_0002087

has super-classes
obsolete_Latinoc

Latino, South Americanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ERO_0002090

has super-classes
obsolete_Latinoc

lavagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600044

has super-classes
collecting specimen from organismc
material component separationc
achieves_planned_objectiveop some material separation objectivec

left adrenal glandc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001234

has super-classes
adrenal glandc

left hemicolectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000119

has super-classes
colectomyc

left kidneyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0004538

has super-classes
kidneyc

left kidney biopsyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000173

has super-classes
biopsyc

left kidney mass excisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000175

has super-classes
surgical procedurec

Left legc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FMA_24981

has super-classes
material anatomical entityc

left lobe of thyroid glandc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001120

has super-classes
organ partc

left lungc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002168

has super-classes
lungc

left lung biopsyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000184

has super-classes
biopsyc

left lung lobectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000186

has super-classes
surgical procedurec

left lung mass excisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000188

has super-classes
surgical procedurec

left nephroureterectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000178

has super-classes
surgical procedurec

left oophorectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000158

has super-classes
surgical procedurec

left ovaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002119

has super-classes
ovaryc

left partial nephrectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000176

has super-classes
surgical procedurec

left pneumonectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000190

has super-classes
surgical procedurec

Left posterior tibial arteryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FMA_43899

has super-classes
tibial arteryc

left radical nephrectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000177

has super-classes
surgical procedurec

left salpingo-oophorectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000163

has super-classes
surgical procedurec

Left tibial nervec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FMA_22110

has super-classes
tibial nervec

legal person rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000038

We are aware of the fact that Wikipedia's definition differs from ours by saying that "Legal personality (...) is the characteristic of a non-living entity regarded by law to have the status of personhood" (http://en.wikipedia.org/wiki/Legal_personality) However, Shaw explicates: "In any legal system, certain entities, whether they be individuals or companies, will be regarded as possessing rights and duties enforceable at law. Thus an individual may prosecute or be prosecuted for assault and a company can sue for breach of contract. They are able to do this because the law recognises them as 'legal persons' possessing the capacity to have and to maintain certain rights, and being subject to perform specific duties. (...) In municipal law individuals, limited companies and public corporations are recognized as each possessing a distinct legal personality, the terms of which are circumscribed by the relevant legislation" (Shaw MN: International Law. Sixth Edition. Cambridge University Press, Cambridge, 2008). We hold that Shaw's position is ontological more prolific since it not only allows to explain how groups of individuals become recognized as unities at law, but also how different individuals can hold different legal personality roles (always against the context of one legal system). The latter will proof useful when dealing with the representing comatous patients or minorsat law in ontologies.
has super-classes
role in human social processesc
(inheres inop some Homo sapiensc or collection of humansc) and (inheres inop only Homo sapiensc or collection of humansc)

Leica Peloris rapid tissue processorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002192

has super-classes
automatic tissue processorc

lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000122

has super-classes
morphologyc

length measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000408

has super-classes
scalar measurement datumc
has measurement unit labelop some length unitc
is quality measurement ofop some lengthc
has sub-classes
greatest tumor dimension on slidec, tissue section thicknessc

length unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000001

has super-classes
measurement unit labelc

Lentivirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11646

has super-classes
Virusesc
has sub-classes
Human immunodeficiency virus 1c, Human immunodeficiency virus 2c

leukocytec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000738

has super-classes
cellc

leukocyte specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000018

has super-classes
swab specimenc
specimenc and (is_specified_output_ofop some collecting specimen with swabc and (has_specified_inputop some leukocytec))

lidocainec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_6456

has super-classes
molecular entityc

life-death temporal boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0035944

has super-classes
process boundaryc
has sub-classes
cessation of brain activity deathc, cessation of cardiac activity deathc

lifelong non-drinker of alcoholc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000507

has super-classes
Alcohol Use Historyc

lifelong non-smoker historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000512

has super-classes
Tobacco Smoking Historyc

limitations on research authorization for use of donated specimensc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000494

has super-classes
authorization documentation for postmortem specimen donation for a specified purposec

lingula of left lungc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0008954

has super-classes
organ partc

liverc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002107

has super-classes
material anatomical entityc

liver specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002546

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some liverc))
has super-classes
specimen from organismc

local anaestheticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_36333

has super-classes
anaestheticc

local pathology review of QC FFPE tumor tissue H&E slide was completedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000446

has super-classes
information content entityc

local pathology review was consistent with site of tissue procurement diagnostic pathology reportc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000447

has super-classes
information content entityc

Location adjacent to tissue fixationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000059

has super-classes
Anatomical locationc

Location below resectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000058

has super-classes
Anatomical locationc

longitudinal study designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001019

has super-classes
study designc
has sub-classes
cohort study designc, panel study designc
is disjoint with
case control study designc, cross sectional study designc, population based study designc, quality control study designc, twin study designc

lormetazepamc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_52993

has super-classes
molecular entityc

lot numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000132

has super-classes
symbolc

low anterior resectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000125

has super-classes
surgical procedurec

lower lipc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001835

has super-classes
material anatomical entityc

lungc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002048

has super-classes
material anatomical entityc
has sub-classes
left lungc, right lungc

lung acinar adenocarcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_6482

has super-classes
lung adenocarcinomac

lung adenocarcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_3910

has super-classes
lung carcinomac
has sub-classes
Lung Colloid Adenocarcinomac, Lung Signet Ring Cell Carcinomac, Solid Lung Adenocarcinomac, bronchiolo-alveolar adenocarcinomac, lung acinar adenocarcinomac, lung clear cell carcinomac, lung papillary adenocarcinomac

lung carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_3905

has super-classes
cancerc
has sub-classes
basaloid lung carcinomac, lung adenocarcinomac, lung combined type small cell adenocarcinomac, lung squamous cell carcinomac

lung clear cell carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_7267

has super-classes
lung adenocarcinomac

Lung Colloid Adenocarcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C45512

has super-classes
lung adenocarcinomac

lung combined type small cell adenocarcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_0050917

has super-classes
lung carcinomac

lung papillary adenocarcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_5588

has super-classes
lung adenocarcinomac

Lung Signet Ring Cell Carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C45514

has super-classes
lung adenocarcinomac

lung specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002534

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some lungc))
has super-classes
specimen from organismc

lung squamous cell carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_3907

has super-classes
lung carcinomac
has sub-classes
Lung Squamous Cell Carcinoma, Clear Cell Variantc, Lung Squamous Cell Carcinoma, Papillary Variantc, Lung Squamous Cell Carcinoma, Small Cell Variantc

Lung Squamous Cell Carcinoma, Clear Cell Variantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C45503

has super-classes
lung squamous cell carcinomac

Lung Squamous Cell Carcinoma, Papillary Variantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C45502

has super-classes
lung squamous cell carcinomac

Lung Squamous Cell Carcinoma, Small Cell Variantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C45504

has super-classes
lung squamous cell carcinomac

lymph nodec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000029

has super-classes
material anatomical entityc

lyophilization storagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000927

can link to freezing-dying equipment, such as freeze-dryer, rotary evaporator, if needed
has super-classes
storagec
achieves_planned_objectiveop some material maintenance objectivec
has_specified_inputop some material entityc

lyophilized specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000965

is equivalent to
(is_specified_output_ofop some lyophilization storagec and (has_specified_inputop some has roleop some specimen rolec)) and (has roleop some specimen rolec)
has super-classes
specimen with known storage statec

macromoleculec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_33839

has super-classes
molecular entityc
has sub-classes
nucleic acidc, peptidec

main release ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000003

has super-classes
ontology modulec

maintaining cell culturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600024

has super-classes
material maintenancec
achieves_planned_objectiveop some material maintenance objectivec
has_specified_inputop some culture mediumc or cell freezing mediumc
has_specified_outputop some cultured cell populationc
has_specified_inputop some cultured cell populationc

male gender identity information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000211

Contributors:
Amanda Hicks
Mathias Brochhausen
Matthew Diller
Sarah Bost
William R. Hogan
has super-classes
gender identity information content entityc

malignant ovarian Brenner tumorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_4217

has super-classes
ovarian cancerc

malignant ovarian germ cell neoplasmc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_2155

has super-classes
ovarian cancerc

Mammaliac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_40674

has super-classes
Amniotac
has sub-classes
Euarchontogliresc

manager of human research protocol requirements rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000350

has super-classes
rolec

manual FFPE tissue section H&E clearingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000343

has super-classes
planned processc

manual FFPE tissue section H&E cover slippingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000344

has super-classes
planned processc

manual FFPE tissue section H&E deparaffinizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000341

has super-classes
planned processc

manual FFPE tissue section H&E stainingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000342

has super-classes
planned processc

manufacturerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000835

is equivalent to
(Homo sapiensc or organizationc) and (has roleop some manufacturer rolec)
has super-classes
material entityc
has sub-classes
commercial manufacturerc, fixative product manufacturerc, in-house manufacturerc

manufacturer rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000571

has super-classes
rolec
realized inop only manufacturingc
inheres inop some Homo sapiensc or organizationc

manufacturingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000457

is equivalent to
achieves_planned_objectiveop some manufacturing objectivec
has super-classes
material processingc
has_specified_outputop some processed materialc
has_specified_inputop some material entityc

manufacturing objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000458

has super-classes
material transformation objectivec

massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000125

has super-classes
physical qualityc

mass measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000414

has super-classes
scalar measurement datumc
(has measurement unit labelop only mass unitc) and (is quality measurement ofop only massc)
has sub-classes
resected tissue specimen mass measurement datumc, specimen weightc, weight of frozen tissue specimenc

mass unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000002

has super-classes
measurement unit labelc

material analysis servicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001547

is equivalent to
material servicec and (provides_service_consumer_withop some assayc)
has super-classes
material servicec

material anatomical entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000465

has super-classes
material entityc
has sub-classes
Left legc, Right legc, Right mammary glandc, adrenal glandc, aortac, areolac, blood vesselc, brainc, breastc, cheekc, chorionic villusc, colonc, coronary arteryc, cortex of kidneyc, endocrine glandc, esophagusc, esophagus mucosac, eyec, heartc, integumentc, kidneyc, liverc, lower lipc, lungc, lymph nodec, minor salivary glandc, mouthc, multi-tissue structurec, nasopharynxc, neural tissuec, organ partc, organism substancec, oropharynxc, ovaryc, pancreasc, pituitary glandc, placentac, prostate glandc, reproductive systemc, respiratory systemc, skin of bodyc, spleenc, stomachc, strand of hairc, tailc, testisc, throatc, thyroid glandc, tibial arteryc, tissuec, tonguec, upper respiratory tractc, urethrac, urinary bladderc, uterine cervixc

material combinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000652

is equivalent to
achieves_planned_objectiveop some material combination objectivec
has super-classes
material processingc
has_specified_outputop some material entityc
has_specified_inputop some material entityc
has sub-classes
adding a material entity into a targetc, pooling specimensc

material combination objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000686

has super-classes
material transformation objectivec
has sub-classes
adding material objectivec

material component separationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600014

is equivalent to
achieves_planned_objectiveop some material separation objectivec
has super-classes
material processingc
has_specified_inputop some material entityc
has_specified_outputop some material entityc
has sub-classes
cell culture splittingc, centrifugationc, dialysisc, extractionc, filtrationc, lavagec, material portioningc, platelet-poor plasma preparation processc

material entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000040

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
independent continuantc
has sub-classes
aggregate of organizationsc, anatomical clusterc, atomc, cellc, collection of specimensc, collection packetc, disorderc, environmental materialc, fiat object partc, manufacturerc, material anatomical entityc, material information bearerc, medication materialc, molecular entityc, objectc, object aggregatec, organismc, organizationc, pathogenc, populationc, post-office boxc, processed materialc, protein-containing complexc, specimenc, streetc, target of material additionc
is in domain of
has 2D boundaryop, has disposition to bindop, has historyop
is in range of
has disposition to bindop, history ofop
is disjoint with
immaterial entityc

material information bearerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000178

is equivalent to
material entityc and (bearer ofop some concretizesop some information content entityc)
has super-classes
material entityc

material maintenancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000838

is equivalent to
achieves_planned_objectiveop some material maintenance objectivec
has super-classes
planned processc
has sub-classes
maintaining cell culturec, storagec

material maintenance objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000806

has super-classes
objective specificationc

material portioningc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600018

has super-classes
material component separationc
achieves_planned_objectiveop some portioning objectivec

material processingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000094

is equivalent to
achieves_planned_objectiveop some material transformation objectivec
has super-classes
planned processc
has_specified_inputop only material entityc
has_specified_outputop some processed materialc
has sub-classes
addition of molecular labelc, establishing cell culturec, fixationc, in vitro transcriptionc, manufacturingc, material combinationc, material component separationc, specimen family creationc, stainingc

material samplec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000747

is equivalent to
material entityc and (has roleop some material sample rolec)
has super-classes
specimenc
has sub-classes
sample from organismc

material sample rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000740

has super-classes
specimen rolec

material separation devicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000932

is equivalent to
devicec and (has functionop some material separation functionc)
has super-classes
devicec
has sub-classes
centrifugec, filter paperc, microtomec

material separation functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000372

has super-classes
functionc
has sub-classes
filter functionc

material separation objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000639

is equivalent to
portioning objectivec or separation into different composition objectivec
has super-classes
material transformation objectivec
has sub-classes
portioning objectivec, separation into different composition objectivec

material servicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001528

is equivalent to
servicec and (provides_service_consumer_withop some (has_specified_inputop some material entityc) or (has_specified_outputop some material entityc))
has super-classes
servicec
has sub-classes
material analysis servicec, material transport servicec

material supplier rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000018

has super-classes
service provider rolec

material to be added rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000319

has super-classes
rolec
has sub-classes
blood additive rolec

material transformation objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000456

has super-classes
objective specificationc
has sub-classes
manufacturing objectivec, material combination objectivec, material separation objectivec

material transport servicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001580

has super-classes
material servicec

maximum age value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002557

has super-classes
value specificationc

measurand rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002444

has super-classes
rolec
role ofop some material entityc
has sub-classes
analyte rolec

measure functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000453

has super-classes
functionc
realized inop only has_specified_outputop some measurement datumc
function ofop some processed materialc
has sub-classes
image acquisition functionc

measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000109

has super-classes
data itemc
has value specificationop some value specificationc
has sub-classes
albumin volume administered intraoperativelyc, ascites fluid from specimen donor during surgery volume measurement datumc, carbon dioxide level of specimen donor recorded at time closest to organ excisionc, countc, humidity in gross room when specimen arrived from ORc, humidity in lab when blood specimen was receivedc, number of live birthsc, number of pregnanciesc, platelet volume administered intraoperativelyc, scalar measurement datumc, specimen donor intraoperative blood loss volume measurement datumc, specimen donor intraoperative urine excreted volume measurement datumc, specimen measurementc, time stamped measurement datumc
is in domain of
is quality measurement ofop
is in range of
has actual loadop, has maximum capacityop

measurement devicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000832

is equivalent to
devicec and (has functionop some measure functionc)
has super-classes
devicec
has sub-classes
centrifugec, image creation devicec

measurement of time between FFPE tissue processor cycle completion and embeddingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000374

has super-classes
time measurement datumc

measurement unit labelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000003

has super-classes
datum labelc
has sub-classes
Pack Yearc, concentration unitc, length unitc, mass unitc, temperature unitc, time unitc, volume unitc
is in range of
has measurement unit labelop

mechanical functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000379

has super-classes
functionc

meconiumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0007109

has super-classes
fecesc

meconium specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000011

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some meconiumc))
has super-classes
feces specimenc

medical device c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ERO_0001092

has super-classes
devicec

medical product expiration datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000215

has super-classes
data itemc

medical recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001026

It is a chronological written account of examination, treatment, medical history or complaints.
has super-classes
documentc
has sub-classes
sample medical recordc

medication materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000029

is equivalent to
material entityc and (has roleop some medication rolec)
has super-classes
material entityc

medication rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000026

has super-classes
rolec
has sub-classes
anaestheticc, antacidc, antiemeticc, antimicrobial agentc, muscle relaxantc, opioid analgesicc, sedativec

Mediterraneanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C77811

has super-classes
populationc

medullary colon carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_0080183

has super-classes
colon carcinomac

menopausal statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002410

has super-classes
information content entityc
has sub-classes
indeterminate menopausal statusc, perimenopausal statusc, postmenopausal statusc, premenopausal statusc

methohexital sodiumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_6834

has super-classes
molecular entityc

microdissected specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000057

has super-classes
specimenc

Microm Ergostar HM200c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002194

has super-classes
microtomec

microtomec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0400168

has super-classes
material separation devicec
has functionop some mechanical functionc
has functionop some material separation functionc
has sub-classes
Microm Ergostar HM200c

microtome bladec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002195

has super-classes
devicec
has sub-classes
Sakura Low profile Accu-Edge microtome bladec

microtome blade agec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000320

has super-classes
agec
has sub-classes
fresh microtome bladec

microtome maintenance frequencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000327

has super-classes
information content entityc
has sub-classes
daily microtome maintenancec

Midazolamc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DRON_00017834

has super-classes
processed materialc

Middle Easternc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C77820

has super-classes
populationc

milkc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001913

has super-classes
bodily fluidc

milk specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002505

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some milkc))
has super-classes
bodily fluid specimenc

minimum age value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002556

has super-classes
value specificationc

minimum amount of required pre-op blood not drawnc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000197

has super-classes
reason for not banking pre-operative blood specimenc

minimum number of aliquots not bankedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000198

has super-classes
reason for not banking pre-operative blood specimenc

minimum required pre-operative blood tubes collectedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000223

has super-classes
information content entityc

minimum required pre-operative RNA and DNA PAXgene tubes were collectedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000442

has super-classes
information content entityc

minor salivary glandc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001830

has super-classes
material anatomical entityc

minor salivary gland specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002547

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some minor salivary glandc))
has super-classes
specimen from organismc

mixed ethnicityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ERO_0002032

has super-classes
ethnic groupc

mixed mucinous and nonmucinous bronchioloalveolar adenocarcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_0080184

has super-classes
bronchiolo-alveolar adenocarcinomac

mixed state specimen datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_00001011

has super-classes
specimen disease state datumc
is aboutop some specimenc and (has partop some disorderc) and (has partop some normal specimenc)

moderate alcohol consumption historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000509

has super-classes
Alcohol Use Historyc

molecular analysis facility organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002198

is equivalent to
organizationc and (has roleop some service provider rolec and (realized inop some material analysis servicec))
has super-classes
organizationc

molecular entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_23367

has super-classes
material entityc
has sub-classes
Ondansetronc, alcoholc, bupivacainec, diazepamc, dinitrogen oxidec, droperidolc, ethylenediaminetetraacetic acidc, etomidatec, fentanylc, formaldehydec, hydromorphonec, isofluranec, ketaminec, lidocainec, lormetazepamc, macromoleculec, methohexital sodiumc, molecular labelc, morphinec, nicotinec, pancuroniumc, pethidinec, procainec, propofolc, ranitidinec, sodium citratec, steroidc, succinylcholine chloride (anhydrous)c, thiopental sodiumc, vecuroniumc, xylenec

molecular labelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002744

is equivalent to
molecular entityc and (has roleop some molecular label rolec)
has super-classes
molecular entityc
reagentc

molecular label rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002743

has super-classes
reagent rolec

molecular-labeled materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001936

is equivalent to
material entityc and (has partop some molecular labelc) and (is_specified_output_ofop some addition of molecular labelc)
has super-classes
processed materialc

morphinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_17303

has super-classes
molecular entityc

morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000051

has super-classes
physical object qualityc
has sub-classes
lengthc, sizec, wholenessc

mother clinical history of cancerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002377

has super-classes
family clinical history of cancerc

mouthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000165

has super-classes
material anatomical entityc

mucinous bronchioloalveolar adenocarcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_0080185

has super-classes
bronchiolo-alveolar adenocarcinomac

mucinous tubular and spindle renal cell carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_4472

has super-classes
renal carcinomac

Mucosa of abdominal part of esophagusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FMA_63008

has super-classes
esophagus mucosac

multi-tissue structurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000481

has super-classes
material anatomical entityc
has sub-classes
atrium auricular regionc, cerebellumc, renal medullac

multilocular clear cell renal cell carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_4463

has super-classes
renal carcinomac

muscle relaxantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_51371

has super-classes
medication rolec

Muscularis mucosae of abdominal part of esophagusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FMA_63062

has super-classes
esophagus muscularis mucosac

name of biobank contact personc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000014

is equivalent to
designatesop some Homo sapiensc and (is member of organizationop some biobank organizationc) and (bearer ofop some biobank contact rolec)
has super-classes
personal namec

name of biobank person receiving specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000202

has super-classes
personal namec

name of data entry person for local pathology review formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000410

has super-classes
personal namec

name of data entry person for tissue recovery formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000286

has super-classes
personal namec

name of dissector of normal adjacent tissue to tumor for FFPEc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000380

has super-classes
personal namec

name of dissector of parent specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000205

has super-classes
personal namec

name of hosted study collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000034

is equivalent to
identifierc and (designatesop some hosted study collectionc)
has super-classes
sample collection identifierc

name of IATA-trained person verifying specimen transportc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000275

has super-classes
personal namec

name of performer of gross evaluation of resected tissue specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000419

has super-classes
personal namec

name of person in gross room receiving OR specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000413

has super-classes
personal namec

name of person obtaining authorization from legally authorized representative for post-mortem specimen donationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000478

has super-classes
personal namec

name of person performing blood drawc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000232

has super-classes
personal namec

name of person processing blood cell pellet specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000266

has super-classes
personal namec

name of person processing blood plasma specimen aliquotsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000257

has super-classes
personal namec

name of person receiving blood specimen in laboratoryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000240

has super-classes
personal namec

name of person receiving specimen shipmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000279

has super-classes
data itemc

name of person responsible for specimen transportc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000274

has super-classes
personal namec

name of person screening specimen donorsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000477

has super-classes
personal namec

name of person storing specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000246

has super-classes
personal namec

name of person transferring blood plasma specimens to freezerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000258

has super-classes
personal namec

name of quality control inspector of specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000285

has super-classes
personal namec

name of reviewer of pathology case summary report.c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000389

has super-classes
personal namec

name of reviewing pathologist at organization conducting specimen collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000408

has super-classes
personal namec

name of sample collection or study contact personc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000039

is equivalent to
designatesop some Homo sapiensc and (((part ofop some object aggregatec and (administratesop some object aggregatec and (has partop only specimenc))) and (bearer ofop some sample collection or study contact rolec)) or ((bearer ofop some sample collection or study contact rolec) and (participates inop some study design executionc)))
has super-classes
personal namec

name of sample collection responsible or principal investigatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000038

is equivalent to
designatesop some Homo sapiensc and (((part ofop some object aggregatec and (administratesop some object aggregatec and (has partop only specimenc))) and (bearer ofop some responsible party rolec)) or ((bearer ofop some principal investigator rolec) and (participates inop some study design executionc)))
has super-classes
personal namec

name of specimen slide preparation technicianc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000318

has super-classes
personal namec

name of submitter of pathology case summary report.c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000387

has super-classes
personal namec

name of team leader for filling out tissue recovery formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000287

has super-classes
personal namec

nasal swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000917

has super-classes
swab specimenc
has roleop some specimen rolec
is_specified_output_ofop some collecting specimen with swabc

nasopharyngeal swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002606

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen with swabc and (has_specified_inputop some nasopharynxc)))
has super-classes
swab specimenc

nasopharynxc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001728

has super-classes
material anatomical entityc

nasopharynx specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000007

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some nasopharynxc))
has super-classes
specimen from organismc

national biomedical registryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002618

has super-classes
national registryc

national registryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002617

has super-classes
information content entityc
has sub-classes
national biomedical registryc

needlec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000436

has super-classes
devicec
has functionop some transfer functionc
has sub-classes
vacuum-assisted biopsy needlec

needle biopsyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002654

has super-classes
biopsyc
has_specified_inputop some needlec
has sub-classes
core needle biopsyc, fine needle aspiration biopsyc, image guided biopsyc, vacuum-assisted biopsyc

negative serological assay resultc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000097

has super-classes
data itemc

neither hysterectomy nor oophorectomy historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002400

has super-classes
gynecologic surgery historyc

nephew clinical history of cancerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002383

has super-classes
family clinical history of cancerc

neural tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0003714

has super-classes
material anatomical entityc

neuroblastomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_769

has super-classes
cancerc

neutral buffered formalinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000213

has super-classes
processed materialc

New Zealanderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C126536

has super-classes
populationc

nicotinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_18723

has super-classes
molecular entityc

nicotine e-cigarettec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000050

has super-classes
nicotine materialc
has partop some nicotinec

nicotine gum or lozengec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000045

has super-classes
nicotine materialc
has partop some nicotinec

nicotine materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000048

is equivalent to
processed materialc and (has partop some nicotinec)
has super-classes
processed materialc
has sub-classes
cigarc, cigarettec, nicotine e-cigarettec, nicotine gum or lozengec, nicotine patchc

nicotine patchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000043

has super-classes
nicotine materialc
has partop some nicotinec

niece clinical history of cancerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002384

has super-classes
family clinical history of cancerc

no hormonal birth control use historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002404

has super-classes
hormonal birth control use historyc

no recurrence of tumorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000438

has super-classes
information content entityc

non-binary identity information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000212

Contributors:
Amanda Hicks
Mathias Brochhausen
Matthew Diller
Sarah Bost
William R. Hogan
has super-classes
gender identity information content entityc

non-cellular component of tumor slide specimen descriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000401

has super-classes
textual entityc

non-performance of an assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000099

has super-classes
information content entityc

nonmucinous bronchioloalveolar adenocarcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_0080186

has super-classes
bronchiolo-alveolar adenocarcinomac

Nordic, Icelandicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ERO_0002076

has super-classes
ethnic groupc

normal adjacent tissue released to the biobank in addition to tumor tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000435

has super-classes
information content entityc

normal specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001054

is equivalent to
specimenc and (not (has partop some disorderc))
has super-classes
specimenc

normal state specimen datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_00001012

has super-classes
specimen disease state datumc
is aboutop some normal specimenc

North Africanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C126529

has super-classes
populationc

nucleic acidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_33696

has super-classes
macromoleculec
has sub-classes
deoxyribonucleic acidc, ribonucleic acidc

nucleic acid extractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001010

has super-classes
extractc
processed specimenc
(is_specified_output_ofop some nucleic acid extractionc) and (has roleop some specimen rolec)
has grainop some nucleic acidc
has sub-classes
DNA extractc, RNA extractc

nucleic acid extractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0666667

has super-classes
extractionc
has_specified_outputop some nucleic acidc
has_specified_inputop some sample from organismc or organismc or cultured cell populationc
has sub-classes
DNA extractionc, RNA extractionc

number of FFPE stages/replicatesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000299

has super-classes
data itemc

number of live birthsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002395

has super-classes
measurement datumc

number of pregnanciesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002394

has super-classes
measurement datumc

number of sampled human study participants objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001015

has super-classes
objective specificationc
part ofop some study designc
is disjoint with
number of total human study participant objectivec

number of total human study participant objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001016

has super-classes
objective specificationc
part ofop some study designc
is disjoint with
number of sampled human study participants objectivec

numeralc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000029

has super-classes
symbolc

nurse anesthetist rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000227

has super-classes
nurse rolec

nurse rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000014

has super-classes
health care provider rolec
inheres inop some Homo sapiensc
has sub-classes
nurse anesthetist rolec

obesity colorectal cancer risk factorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000535

has super-classes
colorectal cancer risk factorc

objectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000030

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
material entityc
has sub-classes
geographical entityc

object aggregatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000027

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
material entityc
has sub-classes
biobankc, collection of organismsc, hosted study collectionc

objective specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000005

has super-classes
directive information entityc
has sub-classes
assay objectivec, data transformation objectivec, material maintenance objectivec, material transformation objectivec, number of sampled human study participants objectivec, number of total human study participant objectivec, specimen collection objectivec, specimen measurement specificationc
is in domain of
objective_achieved_byop
is in range of
achieves_planned_objectiveop

obo basic subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000018

has super-classes
ontology module subsetted by expressivityc

obsolescence reason specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000225

is equivalent to
{ failed exploratory term , term split , placeholder removed , terms merged , term imported }
has super-classes
data about an ontology partc
has members
term importedni, term splitni, terms mergedni

obsolete authorization documentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000075

has super-classes
documentc
has sub-classes
agreement to a specified research addendumc, authorization documentation for postmortem specimen donation for a specified purposec, research authorization documentation for post mortem specimen donationc

Obsolete Classc back to ToC or Class ToC

IRI: http://www.geneontology.org/formats/oboInOwl#ObsoleteClass

has super-classes
thingc
has sub-classes
obsolete dependent continuantc, obsolete molecular labelc, obsolete_addition of molecular labelc, obsolete_bone marrow specimenc, obsolete_cerebrospinal fluid specimenc, obsolete_core needle biopsyc, obsolete_faeces specimenc, obsolete_fine needle biopsyc, obsolete_postal codec, obsolete_saliva specimenc, obsolete_sample collection or study identifierc, obsolete_study principle investigator or responsiblec, obsolete_survey datac, obsolete_unknown state specimen datac

obsolete dependent continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000005

has super-classes
Obsolete Classc

obsolete molecular labelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/REO_0000280

has super-classes
Obsolete Classc

obsolete_addition of molecular labelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000912

has super-classes
Obsolete Classc

obsolete_African Americanc back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/efo/EFO_0003150

has super-classes
obsolete_Americanc

obsolete_Americanc back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/efo/EFO_0003151

has super-classes
ethnic groupc
has sub-classes
obsolete_African Americanc, obsolete_European-Americanc, obsolete_Latinoc

obsolete_Asianc back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/efo/EFO_0003152

has super-classes
ethnic groupc
has sub-classes
obsolete_Asian Indianc, obsolete_Chinesec, obsolete_Japanesec

obsolete_Asian Indianc back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/efo/EFO_0003153

has super-classes
obsolete_Asianc

obsolete_bone marrow specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000049

Bone marrow contains two types of stem cells: haematopoietic (which can produce blood cells) and stromal (which can produce fat, cartilage and bone).
has super-classes
Obsolete Classc

obsolete_cerebrospinal fluid specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001075

Abbreviated as 'CSF'.
has super-classes
Obsolete Classc

obsolete_Chinesec back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/efo/EFO_0003157

has super-classes
obsolete_Asianc

obsolete_core needle biopsyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000211

has super-classes
Obsolete Classc

obsolete_European-Americanc back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/efo/EFO_0003159

has super-classes
obsolete_Americanc

obsolete_faeces specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001076

has super-classes
Obsolete Classc

obsolete_fine needle biopsyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000210

has super-classes
Obsolete Classc

obsolete_Hispanicc back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/efo/EFO_0003169

has super-classes
ethnic groupc

obsolete_Japanesec back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/efo/EFO_0003164

has super-classes
obsolete_Asianc

obsolete_Latinoc back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/efo/EFO_0003166

has super-classes
obsolete_Americanc
has sub-classes
Latino, Carribeanc, Latino, South Americanc

obsolete_postal codec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000026

MB: This class should probably be a subclass to CRID. However, the textual definition of CRID right now states that each instance has the CRID identifier as a part. This is not the case for postal codes. Therefore, they cannot be subsumed under CRID now. I am looking into changing IAO accordingly. Once that is done, the class ought to be a subclass of CRID.
has super-classes
Obsolete Classc

obsolete_saliva specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001077

It is a clear, tasteless, odorless, slightly acidic (pH 6.8) viscid fluid, secreted from the parotid, sublingual, and submandibular salivary glands and the mucous glands of the oral cavity.
has super-classes
Obsolete Classc

obsolete_sample collection or study identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000006

has super-classes
Obsolete Classc

obsolete_study principle investigator or responsiblec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000100

has super-classes
Obsolete Classc

obsolete_survey datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001003

The equivalent class restriction includes data combination since the the output of survey execution is from one participant, while the survey data is the combination of data gathered from multipe participants or multiple executions of the survey.
has super-classes
Obsolete Classc

obsolete_unknown state specimen datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_00001013

This is a temporary state.
has super-classes
Obsolete Classc

occurrentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000003

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
entityc
has sub-classes
processc, process boundaryc, spatiotemporal regionc, temporal regionc
is in domain of
has participantop, occurs inop
is in range of
has temporal occupantop, participates inop, temporal relationop
is disjoint with
continuantc

OMB American Indian or Alaska Native identity information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000215

Contributors:
Amanda Hicks
Mathias Brochhausen
Matthew Diller
Sarah Bost
William R. Hogan
This definition corresponds to that used by OMB. It is worth noting that the OMB definition from which this one is derived is problematic, in that it implies that one's race cannot be Native American or Alaskan Native unless one maintains tribal affiliations or community attachment.
has super-classes
OMB racial identity information content entityc

OMB Asian identity information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000216

Contributors:
Amanda Hicks
Mathias Brochhausen
Matthew Diller
Sarah Bost
William R. Hogan
has super-classes
OMB racial identity information content entityc

OMB black or African American identity information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000217

Contributors:
Amanda Hicks
Mathias Brochhausen
Matthew Diller
Sarah Bost
William R. Hogan
has super-classes
OMB racial identity information content entityc

OMB ethnic identity information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000206

Contributors:
Amanda Hicks
Mathias Brochhausen
Matthew Diller
Sarah Bost
William R. Hogan
OMB dichotomizes ethnicity into Hispanic or Latino and Not Hispanic or Latino, and ignores all other forms of ethnicity.
has super-classes
ethnic identity information content entityc
has sub-classes
OMB Hispanic or Latino identity information content entityc, OMB not Hispanic or Latino identity information content entityc

OMB Hispanic or Latino identity information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000207

Contributors:
Amanda Hicks
Mathias Brochhausen
Matthew Diller
Sarah Bost
William R. Hogan
It comprehends people of Portuguese culture or origin in Brazil.
has super-classes
OMB ethnic identity information content entityc

OMB Native Hawaiian or other Pacific Islander identity information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000218

Contributors:
Amanda Hicks
Mathias Brochhausen
Matthew Diller
Sarah Bost
William R. Hogan
has super-classes
OMB racial identity information content entityc

OMB not Hispanic or Latino identity information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000208

Contributors:
Amanda Hicks
Mathias Brochhausen
Matthew Diller
Sarah Bost
William R. Hogan
has super-classes
OMB ethnic identity information content entityc

OMB racial identity information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000214

Contributors:
Amanda Hicks
Mathias Brochhausen
Matthew Diller
Sarah Bost
William R. Hogan
has super-classes
racial identity information content entityc
has sub-classes
OMB American Indian or Alaska Native identity information content entityc, OMB Asian identity information content entityc, OMB Native Hawaiian or other Pacific Islander identity information content entityc, OMB black or African American identity information content entityc, OMB white identity information content entityc

OMB white identity information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000219

Contributors:
Amanda Hicks
Mathias Brochhausen
Matthew Diller
Sarah Bost
William R. Hogan
has super-classes
OMB racial identity information content entityc

omental fat padc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0010414

has super-classes
adipose tissuec

omentumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0003688

has super-classes
organ partc
has sub-classes
greater omentumc

omentum specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002548

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some omentumc))
has super-classes
specimen from organismc

omics experiment on specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001014

A tentative procedure that is aimed at discovering some characteristic of a large familiy of cellular molecules, having named by appending suffix "-omics."
has super-classes
study design executionc
planned processc and (realizesop some concretizesop some study designc) and (has participantop some specimenc)

Ondansetronc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_7773

has super-classes
molecular entityc

one-dimensional continuant fiat boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000142

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
continuant fiat boundaryc
is disjoint with
two-dimensional continuant fiat boundaryc, zero-dimensional continuant fiat boundaryc

one-dimensional spatial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000026

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
spatial regionc
is disjoint with
three-dimensional spatial regionc

one-dimensional temporal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000038

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
temporal regionc
has sub-classes
timing of scoring performance statusc
is disjoint with
zero-dimensional temporal regionc

ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000000

has super-classes
data about an ontology partc
has sub-classes
base ontology modulec, bridge ontology modulec, editors ontology modulec, generated ontology modulec, main release ontology modulec, reasoned ontology modulec, subset ontology modulec

ontology module subsetted by expressivityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000017

has super-classes
subset ontology modulec
has sub-classes
obo basic subset ontology modulec, ontology module subsetted by OWL profilec

ontology module subsetted by OWL profilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000019

has super-classes
ontology module subsetted by expressivityc
has sub-classes
EL++ ontology modulec

open surgical methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000183

has super-classes
surgical methodc

operating room technicianc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000228

has super-classes
health care provider rolec

opioid analgesicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_35482

has super-classes
medication rolec

Opisthokontac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33154

has super-classes
Eukaryotac
has sub-classes
Bilateriac

oral swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002607

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen with swabc and (has_specified_inputop some mouthc)))
has super-classes
swab specimenc

ORCIDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000496

has super-classes
identifierc

organ partc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000064

has super-classes
material anatomical entityc
has sub-classes
Anterior wall of vaginac, Cortex of left kidneyc, Cortex of right frontal lobec, Posterior wall of vaginac, Right hemisphere of cerebellumc, Wall of distal part of ileumc, ascending aortac, ascending colonc, body of pancreasc, body of stomachc, body of uterusc, caecumc, cardiac atriumc, descending colonc, esophagogastric junctionc, esophagogastric junction muscularis mucosac, fallopian tubec, heart left ventriclec, hepatic flexure of colonc, ileumc, large intestinec, left lobe of thyroid glandc, lingula of left lungc, omentumc, peritoneumc, rectosigmoid junctionc, rectumc, right lobe of liverc, right lobe of thyroid glandc, sigmoid colonc, small intestinec, splenic flexure of colonc, transverse colonc, uterusc, vaginac

organ temperature measurement assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000066

has super-classes
internal body temperature measurement assayc

organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100026

is equivalent to
Virusesc or Bacteriac or Archaeac or Eukaryotac
has super-classes
material entityc
has sub-classes
Archaeac, Bacteriac, Eukaryotac, Virusesc, immunosuppressed organismc

organism substancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000463

has super-classes
material anatomical entityc
has sub-classes
amniotic fluidc, bodily fluidc, digestive system secreted substancec, fecesc, salivac, semenc, sputumc, urinec, vitreous humorc

organismal qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001995

has super-classes
physical object qualityc
has sub-classes
biological sexc, viabilityc

organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000245

has super-classes
material entityc
has sub-classes
Laboratoryc, biobank organizationc, courier organizationc, departmentc, governmental organizationc, molecular analysis facility organizationc, organization conducting specimen collection from organismc
is in domain of
has organization memberop
is in range of
is member of organizationop
has members
AES Chemunexni, Advanced Instruments Inc. (AI Companies)ni, Affymetrixni, Agilentni, Ambionni, Antigenixni, Apogee Flow Systemsni, Applied Biosystemsni, BIO-RADni, Beckman Coulterni, Becton Dickinson (BD Biosciences)ni, Bentley Instrumentsni, Bruker Corporationni, Bruker Daltonicsni, CytoBuoyni, Cytopeiani, Dako Cytomationni, Exalpha Biologicalni, Exbio Antibodiesni, Helicosni, Illuminani, Invitrogenni, Li-Corni, Luminexni, Milliporeni, Miltenyi Biotecni, NanoString Technologiesni, Nimblegenni, Oxford Nanopore Technologiesni, Pacific Biosciencesni, Partecni, Rocheni, Sysmex Corporation, Kobe, Japanni, Thermoni, Thermo Fisher Scientificni, U.S. Food and Drug Administrationni, Watersni, eBioscienceni

organization conducting specimen collection from organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000085

has super-classes
organizationc

oropharyngeal swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002608

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen with swabc and (has_specified_inputop some oropharynxc)))
has super-classes
swab specimenc

oropharynxc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001729

has super-classes
material anatomical entityc

ovarian cancerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_2394

has super-classes
cancerc
has sub-classes
Ovarian Undifferentiated Carcinomac, endometrioid ovary carcinomac, granulosa cell tumorc, malignant ovarian Brenner tumorc, malignant ovarian germ cell neoplasmc, ovarian carcinosarcomac, ovarian clear cell carcinomac, ovarian mucinous cystadenocarcinomac, ovarian mucinous neoplasmc, ovarian serous carcinomac, ovarian serous cystadenocarcinomac, ovarian squamous cell carcinomac, ovary epithelial cancerc, ovary transitional cell carcinomac, sex cord-gonadal stromal tumorc

ovarian carcinosarcomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_6170

has super-classes
ovarian cancerc

ovarian clear cell carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_0050934

has super-classes
ovarian cancerc
has sub-classes
Borderline Ovarian Clear Cell Tumorc

ovarian mucinous cystadenocarcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_3604

has super-classes
ovarian cancerc

ovarian mucinous neoplasmc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_6067

has super-classes
ovarian cancerc
has sub-classes
Borderline Ovarian Mucinous Tumor, Endocervical-Likec, Borderline Ovarian Mucinous Tumor, Intestinal Typec

ovarian serous carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_0050933

has super-classes
ovarian cancerc
has sub-classes
Borderline Ovarian Serous Tumorc

ovarian serous cystadenocarcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_5746

has super-classes
ovarian cancerc

ovarian squamous cell carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_5531

has super-classes
ovarian cancerc

Ovarian Undifferentiated Carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C4509

has super-classes
ovarian cancerc

ovaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000992

has super-classes
material anatomical entityc
has sub-classes
left ovaryc, right ovaryc

ovary epithelial cancerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_2152

has super-classes
ovarian cancerc
has sub-classes
Borderline Ovarian Seromucinous Tumor/Atypical Proliferative Ovarian Seromucinous Tumorc

ovary specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002549

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some ovaryc))
has super-classes
specimen from organismc

ovary transitional cell carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_4000

has super-classes
ovarian cancerc
has sub-classes
Borderline Ovarian Transitional Cell Tumorc

oven temperature during FFPE tissue section H&E stainingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000336

has super-classes
scalar measurement datumc

oxygen desaturation epochs prior to organ excision descriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000136

has super-classes
comment from tissue procurementc

Pack Yearc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C73993

has super-classes
measurement unit labelc

pancreasc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001264

has super-classes
material anatomical entityc

pancreas specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002527

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some pancreasc))
has super-classes
specimen from organismc

pancuroniumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_7907

has super-classes
molecular entityc

panel study designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001021

has super-classes
longitudinal study designc
is disjoint with
cohort study designc

papillary renal cell carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_4465

has super-classes
renal carcinomac

Paraffinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DRON_00015464

has super-classes
processed materialc
has sub-classes
fresh paraffinc

paraffin specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000950

is equivalent to
(is_specified_output_ofop some paraffin storagec and (has_specified_inputop some has roleop some specimen rolec)) and (has roleop some specimen rolec)
has super-classes
specimen with known storage statec
has sub-classes
FFPE specimenc

paraffin storagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000977

need to specify paraffin or wax is one of specified input of the process
has super-classes
storagec
achieves_planned_objectiveop some material maintenance objectivec
has_specified_inputop some organismc or material anatomical entityc

parent specimen IDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000204

has super-classes
specimen IDc

partially filled informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000024

has super-classes
informed consent formc
is_specified_output_ofop some form fillingc and (has_specified_inputop some data confirm questionnairec) and (has participantop some Homo sapiensc and (has roleop some human subject recuiter rolec)) and (has participantop some Homo sapiensc and (has roleop some patient rolec))

participant signed and dated informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000440

has super-classes
information content entityc

participant under investigation rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000097

has super-classes
rolec
realized inop only study design executionc

patch delivery form for hormonal replacement therapyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002408

has super-classes
delivery form for hormonal replacement therapyc

patch-based hormonal birth control methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000524

has super-classes
Birth Control Methodc

pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000528

is equivalent to
material entityc and (has dispositionop some pathogenic dispositionc)
has super-classes
material entityc

pathogenic dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000450

The use of 'initiates' is intended to convey that a pathogenic disposition is realized when processes resulting in a disorder begin because of some action on the part of the bearer of the disposition. By this interpretation of 'initiates', disorder-causing entities such as glass, UV light, and toxins do not have a pathogenic disposition.
has super-classes
dispositionc
(inheres inop some material entityc) and (realized inop only processc and (results in formation ofop some disorderc))

pathologic distant metastases stage for colon according to AJCC 7th editionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002290

has super-classes
categorical value specificationc
has members
cM0 (colon)ni, cM1 (colon)ni, cM1a (colon)ni, cM1b (colon)ni, pM1 (colon)ni, pM1a (colon)ni, pM1b (colon)ni

pathologic distant metastases stage for kidney according to AJCC 7th editionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002306

has super-classes
categorical value specificationc
has members
cM0 (kidney)ni, cM1 (kidney)ni, pM1 (kidney)ni

pathologic distant metastases stage for lung according to AJCC 7th editionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002298

has super-classes
categorical value specificationc
has members
cM0 (lung)ni, cM1 (lung)ni, cM1a (lung)ni, cM1b (lung)ni, pM1 (lung)ni, pM1a (lung)ni, pM1b (lung)ni

pathologic distant metastases stage for ovary according to AJCC 7th editionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002310

has super-classes
categorical value specificationc
has members
cM0 (ovary)ni, cM1 (ovary)ni, pM1 (ovary)ni

pathologic immunosuppressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000612

has super-classes
immunosuppressionc

pathologic lymph node stage for colon and rectum according to AJCC 7th editionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002270

has super-classes
categorical value specificationc
has members
pN0 (colon)ni, pN1 (colon)ni, pN1a (colon)ni, pN1b (colon)ni, pN1c (colon)ni, pN2 (colon)ni, pN2a (colon)ni, pN2b (colon)ni

pathologic lymph node stage for kidney according to AJCC 7th editionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002284

has super-classes
categorical value specificationc
has members
pN0 (kidney)ni, pN1 (kidney)ni

pathologic lymph node stage for lung according to AJCC 7th editionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002279

has super-classes
categorical value specificationc
has members
pN0 (lung)ni, pN1 (lung)ni, pN2 (lung)ni, pN3 (lung)ni

pathologic lymph node stage for ovary according to AJCC 7th editionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002287

has super-classes
categorical value specificationc
has members
pN0 (ovary)ni, pN1 (ovary)ni

pathologic primary tumor stage for colon and rectum according to AJCC 7th editionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002224

has super-classes
categorical value specificationc
has members
pT0 (colon)ni, pT1 (colon)ni, pT2 (colon)ni, pT3 (colon)ni, pT4a (colon)ni, pT4b (colon)ni, pTis (colon)ni

pathologic primary tumor stage for kidney according to AJCC 7th editionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002243

has super-classes
categorical value specificationc
has members
pT0 (kidney)ni, pT1 (kidney)ni, pT1a (kidney)ni, pT1b (kidney)ni, pT2 (kidney)ni, pT2a (kidney)ni, pT2b (kidney)ni, pT3 (kidney)ni, pT3a (kidney)ni, pT3b (kidney)ni, pT3c (kidney)ni, pT4 (kidney)ni

pathologic primary tumor stage for lung according to AJCC 7th editionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002232

has super-classes
categorical value specificationc
has members
pT0 (lung)ni, pT1 (lung)ni, pT1a (lung)ni, pT1b (lung)ni, pT2 (lung)ni, pT2a (lung)ni, pT2b (lung)ni, pT3 (lung)ni, pT4 (lung)ni, pTis (lung)ni

pathologic primary tumor stage for ovary according to AJCC 7th editionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002256

has super-classes
categorical value specificationc
has members
pT0 (ovary)ni, pT1 (ovary)ni, pT1a (ovary)ni, pT1b (ovary)ni, pT1c (ovary)ni, pT2 (ovary)ni, pT2a (ovary)ni, pT2b (ovary)ni, pT2c (ovary)ni, pT3 (ovary)ni, pT3a (ovary)ni, pT3b (ovary)ni, pT3c (ovary)ni

pathologist submitted specimen procurement feedbackc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000391

has super-classes
comment from tissue procurementc

pathology ink used on resected tissue specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000426

has super-classes
information content entityc

pathology research centerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000358

has super-classes
Laboratoryc

patient questionnairec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000020

has super-classes
questionnairec
has sub-classes
filled patient questionnairec

patient registry datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001002

It can be said to be a formal record of an internationally agreed minimum amount of information about clinical trial.
has super-classes
data setc
is aboutop some Homo sapiensc
has sub-classes
donor patient registry datac

patient rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000093

has super-classes
rolec
inheres inop some Homo sapiensc

PAXgene DNA vacutainerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000234

has super-classes
specimen containerc

PAXgene fixation reagentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000212

has super-classes
processed materialc

PAXgene RNA vacutainerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000235

has super-classes
specimen containerc

pelvic exenterationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000160

has super-classes
surgical procedurec

pelvic mass excisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000161

has super-classes
surgical procedurec

peptidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_16670

has super-classes
macromoleculec
has sub-classes
proteinc

percentage of cross-sectional surface area of entire slide composed of necrotic tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000395

has super-classes
data itemc

percentage of cross-sectional surface area of entire slide composed of tumor focusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000393

has super-classes
data itemc

percentage of gross area of necrosis of a specimen sent to biobankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000430

has super-classes
data itemc

percentage of necrotic tumor slide specimen by surface areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000398

has super-classes
data itemc

percentage of non-cellular component of tumor slide specimen by surface areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000400

has super-classes
data itemc

percentage of tumor cellularity by cell count of the entire slide.c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000394

has super-classes
data itemc

percentage of tumor content of specimen sent to biobankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000431

has super-classes
data itemc

percentage of tumor slide specimen stroma by surface areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000399

has super-classes
data itemc

percentage of viable tumor slide specimen by surface areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000397

has super-classes
data itemc

performance status value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002356

has super-classes
categorical value specificationc
has sub-classes
Eastern Cooperative Oncology Group score value specificationc, Karnofsky score vaue specificationc

pericardial fluidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002409

has super-classes
bodily fluidc

pericardial fluid specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002506

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some pericardial fluidc))
has super-classes
bodily fluid specimenc

perimenopausal statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002413

has super-classes
menopausal statusc

peritoneal fluidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001268

has super-classes
bodily fluidc

peritoneal fluid specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002514

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some peritoneal fluidc))
has super-classes
bodily fluid specimenc

peritoneumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002358

has super-classes
organ partc

personal namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020015

Personal names "today usually comprises a given name bestowed at birth or at a young age plus a surname. It is nearly universal for a human to have a name; except in rare cases, for example feral children growing up in isolation, or infants orphaned by natural disaster for whom no written record survives.[citation needed] The Convention on the Rights of the Child specifies that a child has the right from birth to a name. Certain isolated tribes, such as the Machiguenga of the Amazon, also lack personal names." (http://en.wikipedia.org/wiki/Personal_name)
is equivalent to
identifierc and (designatesop only Homo sapiensc)
has super-classes
identifierc
has sub-classes
family namec, given namec, name of IATA-trained person verifying specimen transportc, name of biobank contact personc, name of biobank person receiving specimenc, name of data entry person for local pathology review formc, name of data entry person for tissue recovery formc, name of dissector of normal adjacent tissue to tumor for FFPEc, name of dissector of parent specimenc, name of performer of gross evaluation of resected tissue specimenc, name of person in gross room receiving OR specimenc, name of person obtaining authorization from legally authorized representative for post-mortem specimen donationc, name of person performing blood drawc, name of person processing blood cell pellet specimenc, name of person processing blood plasma specimen aliquotsc, name of person receiving blood specimen in laboratoryc, name of person responsible for specimen transportc, name of person screening specimen donorsc, name of person storing specimenc, name of person transferring blood plasma specimens to freezerc, name of quality control inspector of specimenc, name of reviewer of pathology case summary report.c, name of reviewing pathologist at organization conducting specimen collectionc, name of sample collection or study contact personc, name of sample collection responsible or principal investigatorc, name of specimen slide preparation technicianc, name of submitter of pathology case summary report.c, name of team leader for filling out tissue recovery formc, specimen preparation contactc

pethidinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_6754

has super-classes
molecular entityc

phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000023

has super-classes
qualityc

phlebotomist rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000225

has super-classes
health care provider rolec

photograph of tissue was taken in pathology gross roomc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000424

has super-classes
information content entityc

physical object qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001241

has super-classes
qualityc
has sub-classes
morphologyc, organismal qualityc, physical qualityc

physical qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001018

has super-classes
physical object qualityc
has sub-classes
humidityc, massc, positionc, temperaturec, timec, weightc

physical storec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002089

is equivalent to
containerc and (has functionop some environment control functionc)
has super-classes
containerc
environmental control devicec

physiological measurement datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001012

Examples: Audiology, Cardiac Physiology, GI Physiology, Neurophysiology, Ophthalmic and Vision Science, Respiratory and Sleep Physiology, Urodynamics, Vascular Technology
has super-classes
data itemc
data itemc and (is aboutop some diseasec or disorderc or treatmentc or (functionc and (inheres inop some part ofop some organismc)))
is disjoint with
countc, count of current sampled human study participantc, count of current total human study participantc

pill delivery form for hormonal replacement therapyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002407

has super-classes
delivery form for hormonal replacement therapyc

pill-based hormonal birth control methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000521

has super-classes
Birth Control Methodc

pipe smoking behaviorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000052

has super-classes
smoking behaviorc
has_specified_inputop some pipe tobaccoc
has participantop some smoking pipec

pipe tobaccoc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000055

has super-classes
tobacco materialc
derives fromop some tobaccoc

pituitary glandc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000007

has super-classes
material anatomical entityc

pituitary gland specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002529

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some pituitary glandc))
has super-classes
specimen from organismc

placement of tissue cassette in FFPE fixative delay durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000368

has super-classes
time measurement datumc

placentac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001987

has super-classes
material anatomical entityc

placenta specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002513

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some placentac))
has super-classes
specimen from organismc

planc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000260

has super-classes
realizable entityc

plan specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000104

2/3/2009 Comment from OBI review. Action specification not well enough specified. Conditional specification not well enough specified. Question whether all plan specifications have objective specifications. Request that IAO either clarify these or change definitions not to use them
has super-classes
directive information entityc
has partop some objective specificationc
has partop some action specificationc
has sub-classes
Birth Control Methodc, algorithmc, protocolc, study designc, survey plan specificationc

planned processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000011

is equivalent to
realizesop some concretizesop some plan specificationc
has super-classes
processc
has sub-classes
act of authorizingc, administration of anaestheticc, administration of antimicrobial agent during surgeryc, administration of inhalation anaestheticc, administration of insulin during surgeryc, administration of intravenous anaestheticc, administration of local anaestheticc, administration of medication during surgeryc, administration of regional anaestheticc, administration of steroid during surgeryc, assayc, chewing tobacco behaviorc, contactingc, countingc, data transformationc, determination if assay will provide reliable resultsc, diagnostic processc, discardingc, document editingc, documentingc, drawing a conclusion based on datac, dubbing processc, form data verification processc, health care encounterc, image creationc, informed consent processc, intravenous administration of muscle relaxantc, intravenous administration of opioid analgesicc, investigationc, manual FFPE tissue section H&E clearingc, manual FFPE tissue section H&E cover slippingc, manual FFPE tissue section H&E deparaffinizationc, manual FFPE tissue section H&E stainingc, material maintenancec, material processingc, preoperative intravenous administration of antacidc, preoperative intravenous administration of antiemeticc, preoperative intravenous administration of medicationc, preoperative intravenous administration of opioid analgesicc, preoperative intravenous administration of sedativec, sample collection data entryc, sample collection data updatec, sample handlingc, sampling specimens for biobankc, selectionc, servicec, smoking behaviorc, specimen collection processc, specimen receivingc, study design executionc, surgical ligature processc, surgical procedurec, survey executionc, temperature regulatingc, treatmentc
is in domain of
achieves_planned_objectiveop, has_specified_inputop, has_specified_outputop
is in range of
is_specified_input_ofop, is_specified_output_ofop, objective_achieved_byop

planningc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000339

has super-classes
processc
processc and (has participantop some plan specificationc)

platelet volume administered intraoperativelyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000140

has super-classes
measurement datumc

platelet-poor plasma preparation processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002775

has super-classes
material component separationc

platelet-poor plasma specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002774

has super-classes
blood plasma specimenc

pleural fluidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001087

has super-classes
bodily fluidc

pleural fluid specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002515

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some pleural fluidc))
has super-classes
bodily fluid specimenc

pNXc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002204

has super-classes
cannot be assessed determinationc

pool of specimensc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302716

is equivalent to
specimenc and (is_specified_output_ofop some material combinationc and (has_specified_inputop only specimenc))
has super-classes
processed specimenc

pooling specimensc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600016

has super-classes
material combinationc
has_specified_inputop min 2
has_specified_inputop some specimenc
achieves_planned_objectiveop some material combination objectivec
has_specified_outputop some pool of specimensc

populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000181

has super-classes
material entityc
has sub-classes
Australianc, Central Africanc, Central Asianc, Europeanc, Mediterraneanc, Middle Easternc, New Zealanderc, North Africanc, Scandinavianc, South Africanc, South Asianc, Southeast Asianc, ethnic groupc

population based study designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001022

has super-classes
study designc
is disjoint with
case control study designc, cross sectional study designc, longitudinal study designc, quality control study designc, twin study designc

portioning objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000678

has super-classes
material separation objectivec

positionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000140

has super-classes
physical qualityc
has sub-classes
specimen positionc

positive serological assay resultc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000096

has super-classes
data itemc

post adjuvant performance status scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000519

has super-classes
timing of scoring performance statusc

post mortem donor rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000484

has super-classes
rolec

post-office boxc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000024

has super-classes
material entityc

post-office box numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000023

is equivalent to
identifierc and (denotesop only post-office boxc)
has super-classes
identifierc

postal addressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000422

has super-classes
textual entityc
is aboutop some geographic locationc
has sub-classes
postal address of biobank contact personc

postal address of biobank contact personc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000016

is equivalent to
postal addressc and (is contact information aboutop some biobank contact personc)
has super-classes
postal addressc

postal codec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000646

has super-classes
identifierc
has sub-classes
postal code for sample collection or study contactc, postal code of biobank contactc

postal code for sample collection or study contactc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000044

is equivalent to
postal codec and (part ofop some postal addressc and (is contact information aboutop some Homo sapiensc and (((part ofop some object aggregatec) and (administratesop some object aggregatec and (has partop only specimenc))) or ((bearer ofop some sample collection or study contact rolec) and (participates inop some study design executionc)))))
has super-classes
postal codec

postal code of biobank contactc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000027

is equivalent to
postal codec and (part ofop some postal addressc and (is contact information aboutop some Homo sapiensc and (is member of organizationop some biobank organizationc) and (bearer ofop some biobank contact rolec)))
has super-classes
postal codec

Posterior wall of vaginac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FMA_19973

has super-classes
organ partc

postmenopausal statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002414

has super-classes
menopausal statusc

postmortem collecting specimen from organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000061

has super-classes
collecting specimen from organismc

pre-adjuvant performance status scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000518

has super-classes
timing of scoring performance statusc

pre-mortem specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000873

is equivalent to
is_specified_output_ofop some specimen collection processc and (has_specified_inputop some organismc and (has qualityop some alivec))
has super-classes
specimen with pre- or post-mortem statusc

pre-operative blood specimen collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000230

has super-classes
blood specimen collectionc

pregnancy historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002393

has super-classes
clinical historyc

pregnancy-induced immunosuppressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000644

has super-classes
immunosuppressionc

premenopausal statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002412

has super-classes
menopausal statusc

preoperative intravenous administration of antacidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000104

has super-classes
planned processc

preoperative intravenous administration of antiemeticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000103

has super-classes
planned processc

preoperative intravenous administration of medicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000105

has super-classes
planned processc

preoperative intravenous administration of opioid analgesicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000102

has super-classes
planned processc

preoperative intravenous administration of sedativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000101

has super-classes
planned processc

preoperative performance status scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000517

has super-classes
timing of scoring performance statusc

preparation of FFPE block face for sectioning protocolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000322

has super-classes
protocolc

presence of a tumor larger than a specified size exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000496

has super-classes
exclusion criterionc

presence of gross hemolysis of plasma observedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000261

has super-classes
information content entityc

presence of metastatic tumor exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000495

has super-classes
exclusion criterionc

presence of sarcomatoid features on specimen slidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000411

has super-classes
information content entityc

previous colorectal polyps colorectal cancer risk factorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000537

has super-classes
colorectal cancer risk factorc

primary cultured cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000001

has super-classes
cultured cellc
not (is_specified_output_ofop some cell culture splittingc)
not (derives fromop some cultured cellc and (is_specified_output_ofop some cell culture splittingc))

primary diagnosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001009

has super-classes
diagnosisc
is disjoint with
comorbidityc

principal investigator rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000103

has super-classes
responsible party rolec

Prior Chemotherapyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C16171

has super-classes
treatmentc

Prior Hormone Therapyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C16175

has super-classes
treatmentc

Prior Immunotherapyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C16168

has super-classes
treatmentc

Prior Radiation Therapyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C15477

has super-classes
treatmentc

procainec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_8430

has super-classes
molecular entityc

processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000015

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
occurrentc
has sub-classes
authenticationc, biological_processc, historyc, immunosuppressionc, planned processc, planningc, process profilec
is in domain of
history ofop, realizesop, regulatesop
is in range of
has historyop, is duration ofop, realized inop, regulatesop
is disjoint with
temporal regionc

process boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000035

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
occurrentc
has sub-classes
end of sampling specimens for biobankc, life-death temporal boundaryc, start of sampling specimens for biobankc
is disjoint with
temporal regionc

process profilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000144

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
processc
is disjoint with
historyc

processed materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000047

is equivalent to
material entityc and (is_specified_output_ofop some material processingc)
has super-classes
material entityc
has sub-classes
Midazolamc, PAXgene fixation reagentc, Paraffinc, cell freezing mediumc, cell pelletc, culture mediumc, cultured cell populationc, delivery form for hormonal replacement therapyc, devicec, experimentally modified cell in vitroc, extractc, ink used for marking surgical marginc, molecular-labeled materialc, neutral buffered formalinc, nicotine materialc, processed specimenc, reagentc, tobacco materialc

processed specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000953

A tissue sample that has been sliced and stained for a histology study.
is equivalent to
processed materialc and specimenc
has super-classes
processed materialc
specimenc
has sub-classes
blood plasma specimenc, blood serum specimenc, blood specimen on blood spot cardc, bronchial alveolar lavagec, buffy coat specimenc, fixed tissue specimenc, nucleic acid extractc, pool of specimensc

proctectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000126

has super-classes
surgical procedurec

proctocolectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000127

has super-classes
colectomyc

progestin alone hormone replacement therapyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000541

has super-classes
hormone replacement therapyc

propofolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_44915

has super-classes
molecular entityc

prosector rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000069

has super-classes
rolec

prostate glandc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002367

has super-classes
material anatomical entityc

prostate gland specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002518

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some prostate glandc))
has super-classes
specimen from organismc

proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PR_000000001

has super-classes
peptidec
has sub-classes
insulin gene translation productc

protein-containing complexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0032991

has super-classes
material entityc
has partop some proteinc
has sub-classes
immunoglobulin complexc

protocolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000272

has super-classes
plan specificationc
has sub-classes
FFPE fixation protocolc, FFPE freezing by LN2 vapor phase protocolc, FFPE freezing by dry ice protocolc, FFPE freezing protocolc, FFPE paraffin impregnation methodc, FFPE tissue section H&E clearing protocolc, FFPE tissue section H&E cover slip protocolc, FFPE tissue section H&E deparaffinization protocolc, FFPE tissue section H&E staining protocolc, SOP adjustmentc, buffer formula for specimen fixativec, preparation of FFPE block face for sectioning protocolc, standard operating procedurec, surgical methodc

pTXc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002203

has super-classes
cannot be assessed determinationc

qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000019

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
specifically dependent continuantc
has sub-classes
buffered formalin conditionc, phenotypec, physical object qualityc, relational qualityc
is in range of
has qualityop, is quality measurement ofop
is disjoint with
realizable entityc

quality control study designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001023

has super-classes
study designc
is disjoint with
case control study designc, cross sectional study designc, longitudinal study designc, population based study designc, twin study designc

questionnairec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001000

has super-classes
documentc
has sub-classes
data confirm questionnairec, patient questionnairec
has members
Edingburgh handedness inventoryni

racial identity information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000213

Contributors:
Amanda Hicks
Mathias Brochhausen
Matthew Diller
Sarah Bost
William R. Hogan
has super-classes
social identity information content entityc
has sub-classes
OMB racial identity information content entityc

radiation treatment exclusion criteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002425

has super-classes
exclusion criterionc

radiation treatment within the recent past exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002427

has super-classes
exclusion criterionc

ranitidinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_8776

has super-classes
molecular entityc

rapid plasma reagin testc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002156

has super-classes
analyte assayc
(realizesop some analyte rolec and (inheres inop some immunoglobulin complexc)) and (has_specified_inputop some immunoglobulin complexc)

reagentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001879

(copied from ReO) Reagents are distinguished from devices/instruments that also serve as facilitators in scientific techniques by the fact that reagents are chemical or biological in nature and necessarily participate in or have parts that participate in some chemical interaction or reaction during their intended participation in some technique. By contrast, devices do not participate in a chemical reaction/interaction during the technique. Reagents are distinguished from study subjects/evaluants in that study subjects and evaluants are that about which conclusions are drawn and knowledge is sought in an investigation - while reagents, by definition, are not. It should be noted, however, that reagent and study subject/evaluant roles can be borne by instances of the same type of material entity - but a given instance can only realize one of these roles in the execution of a given assay. For example, taq polymerase can bear a reagent role or an evaluant role. In a DNA sequencing assay aimed at generating sequence data about some plasmid, the reagent role of the taq polymerase is realized. In an assay to evaluate the quality of the taq polymerase itself, the evaluant/study subject role of the taq is realized, but not the reagent role since the taq is the subject about which data is generated. In regard to the statement that reagents are 'distinct' from the specified outputs of a technique: note that a reagent may be incorporated into a material output of a technique, as long as the IDENTITY of this output is distinct from that of the bearer of the reagent role. For example, dNTPs input into a PCR are reagents that become part of the material output of this technique, but this output has a new identity (ie that of a 'nucleic acid molecule') that is distinct from the identity of the dNTPs that comprise it. Similarly, a biotin molecule input into a cell labeling technique are reagents that become part of the specified output, but the identity of the output is that of some modified cell specimen which shares identity with the input unmodified cell specimen, and not with the biotin label. Thus, we see that an important criteria of 'reagent-ness' is that it is a facilitator, and not the primary focus of an investigation or material processing technique (ie not the specified subject/evaluant about which knowledge is sought, or the specified output material of the technique).
is equivalent to
material entityc and (has roleop some reagent rolec)
has super-classes
processed materialc
is_specified_output_ofop some material processingc
has sub-classes
molecular labelc

reagent application functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000960

has super-classes
functionc

reagent rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000086

(copied from ReO) Reagents are distinguished from instruments or devices that also participate in scientific techniques by the fact that reagents are chemical or biological in nature and necessarily participate in or have parts that participate in some chemical interaction or reaction during their intended participation in some technique. By contrast, instruments do not participate in a chemical reaction/interaction during the technique. Reagents are distinguished from study subjects/evaluants in that study subjects and evaluants are that about which conclusions are drawn and knowledge is sought in an investigation - while reagents, by definition, are not. It should be noted, however, that reagent and study subject/evaluant roles can be borne by instances of the same type of material entity - but a given instance will realize only one of these roles in the execution of a given assay or technique. For example, taq polymerase can bear a reagent role or an evaluant role. In a DNA sequencing assay aimed at generating sequence data about some plasmid, the reagent role of the taq polymerase is realized. In an assay to evaluate the quality of the taq polymerase itself, the evaluant/study subject role of the taq is realized, but not the reagent role since the taq is the subject about which data is generated. In regard to the statement that reagents are 'distinct' from the specified outputs of a technique, note that a reagent may be incorporated into a material output of a technique, as long as the IDENTITY of this output is distinct from that of the bearer of the reagent role. For example, dNTPs input into a PCR are reagents that become part of the material output of this technique, but this output has a new identity (ie that of a 'nucleic acid molecule') that is distinct from the identity of the dNTPs that comprise it. Similarly, a biotin molecule input into a cell labeling technique are reagents that become part of the specified output, but the identity of the output is that of some modified cell specimen which shares identity with the input unmodified cell specimen, and not with the biotin label. Thus, we see that an important criteria of 'reagent-ness' is that it is a facilitator, and not the primary focus of an investigation or material processing technique (ie not the specified subject/evaluant about which knowledge is sought, or the specified output material of the technique).
has super-classes
rolec
has sub-classes
molecular label rolec

realizable entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000017

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
specifically dependent continuantc
has sub-classes
dispositionc, eligibility of candidate participationc, planc, rolec
is in domain of
realized inop
is in range of
realizesop
is disjoint with
qualityc

reason for lack of data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002199

has super-classes
information content entityc
has sub-classes
cannot be assessed determinationc

reason for not banking pre-operative blood specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000195

has super-classes
comment from tissue procurementc
has sub-classes
blood not received in biobankc, blood was hemolyzed or not useablec, minimum amount of required pre-op blood not drawnc, minimum number of aliquots not bankedc

reason for not collecting frozen specimensc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000090

has super-classes
comment from tissue procurementc

reason for not taking a photograph of resected tissue in pathology gross roomc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000425

has super-classes
textual entityc

reasoned ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000013

has super-classes
ontology modulec

receipt and dissection of surgical specimen SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000200

has super-classes
standard operating procedurec

record of missing knowledgec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000852

has super-classes
information content entityc

rectal swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002609

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen with swabc and (has_specified_inputop some rectumc)))
has super-classes
swab specimenc

rectal temperature measurement assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000065

has super-classes
internal body temperature measurement assayc

rectosigmoid junctionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0036214

has super-classes
organ partc

rectosigmoidectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000128

has super-classes
colectomyc

rectumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001052

has super-classes
organ partc

recycled buffered formalin conditionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000219

has super-classes
buffered formalin conditionc

regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/SO_0000001

has super-classes
generically dependent continuantc

regulator rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000014

has super-classes
regulatory rolec

regulatory rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000017

has super-classes
rolec
has sub-classes
regulator rolec

relational qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000145

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
qualityc

relationship between person signing research authorization and specimen donorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000481

has super-classes
specifically dependent continuantc

relationship by marriagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ERO_0002063

has super-classes
family relationshipc

renal carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_4451

has super-classes
cancerc
has sub-classes
Renal Cell Carcinoma Associated with Xp11.2 Translocations/TFE3 Gene Fusionsc, Tubulocystic Renal Cell Carcinomac, chromophobe renal cell carcinomac, clear cell renal cell carcinomac, collecting duct carcinomac, mucinous tubular and spindle renal cell carcinomac, multilocular clear cell renal cell carcinomac, papillary renal cell carcinomac, renal cell carcinomac

renal cell carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_4450

has super-classes
renal carcinomac

Renal Cell Carcinoma Associated with Xp11.2 Translocations/TFE3 Gene Fusionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C27891

has super-classes
renal carcinomac

renal medullac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000362

has super-classes
multi-tissue structurec

renal medulla specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002521

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some renal medullac))
has super-classes
specimen from organismc

reproductive systemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000990

has super-classes
material anatomical entityc

research authorization documentation for post mortem specimen donationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000459

has super-classes
obsolete authorization documentc
has sub-classes
research authorization documentation for post mortem specimen donation that is affirmativec, research authorization documentation for post mortem specimen donation that is negativec, research authorization for post mortem specimen donation for a specific tissue or fluidc, research authorization for post mortem specimen donation not obtained because legally authorized representative did not show up to the appointment as scheduled.c, research authorization for post mortem specimen donation not obtained because legally authorized representative did not agree with the activity of biobanking.c, research authorization for post mortem specimen donation not obtained because legally authorized representative felt pressuredc, research authorization for post mortem specimen donation not obtained because legally authorized representative felt too distraughtc, research authorization for post mortem specimen donation not obtained because legally authorized representative needed more time to make a decisionc, research authorization for post mortem specimen donation not obtained because legally authorized representative was uncomfortable with the risksc, research authorization for post mortem specimen donation not obtained because legally authorized representative was afraid the decision might affect the surgery plans of donorc, research authorization for post mortem specimen donation not obtained due to religious reasonsc, research authorization for post mortem specimen donation not obtained due to surgeon's recommendationc

research authorization documentation for post mortem specimen donation that is affirmativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000461

has super-classes
research authorization documentation for post mortem specimen donationc

research authorization documentation for post mortem specimen donation that is negativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000462

has super-classes
research authorization documentation for post mortem specimen donationc

research authorization for post mortem specimen donationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000457

has super-classes
act of authorizingc

research authorization for post mortem specimen donation for a specific tissue or fluidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002008

has super-classes
research authorization documentation for post mortem specimen donationc

research authorization for post mortem specimen donation not obtained because legally authorized representative did not show up to the appointment as scheduled.c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000471

has super-classes
research authorization documentation for post mortem specimen donationc

research authorization for post mortem specimen donation not obtained because legally authorized representative did not agree with the activity of biobanking.c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000470

has super-classes
research authorization documentation for post mortem specimen donationc

research authorization for post mortem specimen donation not obtained because legally authorized representative felt pressuredc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000465

has super-classes
research authorization documentation for post mortem specimen donationc

research authorization for post mortem specimen donation not obtained because legally authorized representative felt too distraughtc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000466

has super-classes
research authorization documentation for post mortem specimen donationc

research authorization for post mortem specimen donation not obtained because legally authorized representative needed more time to make a decisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000467

has super-classes
research authorization documentation for post mortem specimen donationc

research authorization for post mortem specimen donation not obtained because legally authorized representative was uncomfortable with the risksc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000468

has super-classes
research authorization documentation for post mortem specimen donationc

research authorization for post mortem specimen donation not obtained because legally authorized representative was afraid the decision might affect the surgery plans of donorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000469

has super-classes
research authorization documentation for post mortem specimen donationc

research authorization for post mortem specimen donation not obtained due to religious reasonsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000463

has super-classes
research authorization documentation for post mortem specimen donationc

research authorization for post mortem specimen donation not obtained due to surgeon's recommendationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000464

has super-classes
research authorization documentation for post mortem specimen donationc

research authorization for post mortem specimen donation was obtainedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000460

has super-classes
information content entityc

research authorization obtainer role for post mortem donation of specimens from a legally authorized representativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000458

has super-classes
rolec

resected tissue specimen mass measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000420

has super-classes
mass measurement datumc

resolved specimen collection issuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000089

has super-classes
data itemc

respiratory systemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001004

has super-classes
material anatomical entityc

respiratory system specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000005

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some respiratory systemc))
has super-classes
specimen from organismc

responsible party rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000102

has super-classes
investigation agent rolec
has sub-classes
principal investigator rolec

reticulocytec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000558

has super-classes
cellc

reticulocyte specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000017

has super-classes
swab specimenc
specimenc and (is_specified_output_ofop some collecting specimen with swabc and (has_specified_inputop some reticulocytec))

ribonucleic acidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_33697

has super-classes
nucleic acidc

right adrenal glandc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001233

has super-classes
adrenal glandc

right cardiac atriumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002078

has super-classes
cardiac atriumc

right hemicolectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000121

has super-classes
colectomyc

Right hemisphere of cerebellumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FMA_83876

has super-classes
organ partc

right kidneyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0004539

has super-classes
kidneyc

right kidney biopsyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000174

has super-classes
biopsyc

right kidney mass excisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000179

has super-classes
surgical procedurec

Right legc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FMA_24980

has super-classes
material anatomical entityc

right lobe of liverc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001114

has super-classes
organ partc

right lobe of thyroid glandc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001119

has super-classes
organ partc

right lungc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002167

has super-classes
lungc

right lung biopsyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000185

has super-classes
biopsyc

right lung lobectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000187

has super-classes
surgical procedurec

right lung mass excisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000189

has super-classes
surgical procedurec

Right mammary glandc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FMA_57987

has super-classes
material anatomical entityc

right nephroureterectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000182

has super-classes
surgical procedurec

right oophorectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000159

has super-classes
surgical procedurec

right ovaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002118

has super-classes
ovaryc

right partial nephrectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000180

has super-classes
surgical procedurec

right pneumonectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000191

has super-classes
surgical procedurec

right radical nephrectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000181

has super-classes
surgical procedurec

right salpingo-oophorectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000164

has super-classes
surgical procedurec

Right tibial nervec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FMA_22109

has super-classes
tibial nervec

risk factorc back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/efo/EFO_0003919

has super-classes
dispositionc
has sub-classes
colorectal cancer risk factorc

RNA extractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000880

has super-classes
nucleic acid extractc
has grainop some ribonucleic acidc
is_specified_output_ofop some RNA extractionc

RNA extractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0666666

has super-classes
nucleic acid extractionc
has_specified_outputop some ribonucleic acidc

RNA Integrity Number calculationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002136

has super-classes
data transformationc
has_specified_outputop some measurement datumc and (has value specificationop some RNA Integrity Number value specificationc)

RNA Integrity Number value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002137

has super-classes
value specificationc

robotic surgical methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000171

has super-classes
surgical methodc

rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000023

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
realizable entityc
has sub-classes
FFPE clearing agent rolec, credential rolec, donorc, evaluant rolec, fixativec, investigation agent rolec, manager of human research protocol requirements rolec, manufacturer rolec, material to be added rolec, measurand rolec, medication rolec, participant under investigation rolec, patient rolec, post mortem donor rolec, prosector rolec, reagent rolec, regulatory rolec, research authorization obtainer role for post mortem donation of specimens from a legally authorized representativec, role in human social processesc, service consumer rolec, service provider rolec, specimen receiving organizationc, specimen rolec, specimen transporting organizationc, target of material addition rolec
is in range of
has roleop
is disjoint with
dispositionc

role in human social processesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000024

Previous definition: A role played by an entity in human social processes.
has super-classes
rolec
inheres inop only organizationc or organismc
inheres inop some organizationc or organismc
has sub-classes
contact rolec, human health care rolec, legal person rolec

running titlec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000329

has super-classes
document titlec

Sakura Low profile Accu-Edge microtome bladec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002196

has super-classes
microtome bladec

salivac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001836

has super-classes
organism substancec

saliva specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002507

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some salivac))
has super-classes
specimen from organismc

sample collection data entryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001033

has super-classes
planned processc

sample collection data updatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001034

has super-classes
planned processc
has_specified_outputop some date of data updatec

sample collection identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000001

is equivalent to
identifierc and (designatesop some object aggregatec and (has partop only specimenc))
has super-classes
identifierc
has sub-classes
name of hosted study collectionc

sample collection or study aim descriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000036

is equivalent to
textual entityc and (is aboutop some (object aggregatec and (has partop only specimenc)) or (is aboutop some objective specificationc and (part ofop some study designc)))
has super-classes
textual entityc

sample collection or study contact personc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000099

is equivalent to
Homo sapiensc and (((part ofop some object aggregatec and (administratesop some object aggregatec and (has partop only specimenc))) and (bearer ofop some sample collection or study contact rolec)) or ((bearer ofop some sample collection or study contact rolec) and (participates inop some study design executionc)))
has super-classes
Homo sapiensc

sample collection or study contact rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000094

has super-classes
contact rolec

sample from organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000671

is equivalent to
(is_specified_output_ofop some collecting specimen from organismc) and (has roleop some material sample rolec)
has super-classes
material samplec
specimen from organismc
derives fromop some material anatomical entityc

sample handlingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001080

is equivalent to
planned processc and ((has_specified_inputop some is_specified_output_ofop some specimen collection processc) and (has_specified_outputop some specimenc and (participates inop some storagec)))
has super-classes
planned processc

sample handling summaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001028

It could be argued as to why this class was not created as an 'objective specification'. However, the emphasis here is to 'a briefing of how the specimen in the sample collection have been handled as an indication of specimen quality.'
is equivalent to
is aboutop some sample handlingc
has super-classes
documentc

sample medical recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001027

has super-classes
medical recordc
is aboutop some Homo sapiensc and ((has roleop some participant under investigation rolec) and (has roleop some donorc))

sampling specimens for biobankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000061

is equivalent to
planned processc and (has_specified_outputop some object aggregatec and (part ofop some biobankc) and (has partop only specimenc and (participates inop some storagec)))
has super-classes
planned processc

sarcomatoid features observed on FFPE slidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000412

has super-classes
textual entityc

scalar measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000032

has super-classes
measurement datumc
has value specificationop some scalar value specificationc
has measurement unit labelop min 1
has measurement valuedp min 1
has sub-classes
FFPE clearing agent temperaturec, FFPE dehydration process temperaturec, FFPE paraffin processing for embedding temperaturec, FFPE paraffin temperaturec, FFPE water bath temperaturec, age of paraffinc, blood plasma specimen volumec, blood specimen volumec, cell pellet volumec, length measurement datumc, mass measurement datumc, oven temperature during FFPE tissue section H&E stainingc, temperature in gross room when specimen arrived from ORc, temperature in lab when blood specimen was receivedc, temperature of specimen collection packet at time of receiptc, time measurement datumc
is in domain of
has measurement valuedp
is disjoint with
countc

scalar value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001931

has super-classes
value specificationc
has measurement unit labelop min 1
has specified numeric valuedp min 1

Scandinavianc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C126538

has super-classes
populationc

second piece of tumor tissue was collectedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000432

has super-classes
information content entityc

second temperature recorded in operating room of specimen donorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000135

has super-classes
time stamped measurement datumc

secondary cultured cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001866

A secondary cultured cell has been passaged in culture or is a descendant of such a cell that is derived through propagation in culture.
has super-classes
cultured cellc
(is_specified_output_ofop some cell culture splittingc) or (derives fromop some is_specified_output_ofop some cell culture splittingc)
derives fromop some primary cultured cellc
has sub-classes
cell line cellc

secondary cultured cell populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001905

The concept of a 'secondary cultured cell population' covers cell lines as well as cultured cell populations more immediately derived from a primary culture which have yet to achieve adequate genetic stability and compositional homogeneity to be considered a cell line. The extent of the collection of cells in a 'secondary cultured cell population' is restricted only in that all cell members must share a propagation history (ie be derived through a common lineage of passages from an initial culture). Secondary cultured cell populations can be under active culture, stored in a quiescent state for future use, or applied experimentally.
has super-classes
cultured cell populationc
is_specified_output_ofop some cell culture splittingc
has grainop some secondary cultured cellc
has grainop only secondary cultured cellc
has sub-classes
cell linec

sedativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_35717

has super-classes
medication rolec

selectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001928

is equivalent to
realizesop some concretizesop some selection criterionc
has super-classes
planned processc
has sub-classes
human subject enrollmentc

selection criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001755

has super-classes
directive information entityc
has sub-classes
eligibility criterionc

semenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001968

has super-classes
organism substancec

semen specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000008

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some semenc))
has super-classes
specimen from organismc

separation into different composition objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000681

has super-classes
material separation objectivec

Sephardic Jewc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ERO_0001979

has super-classes
ethnic groupc

serology alert associated with specimen donorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000352

has super-classes
textual entityc

servicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001173

is equivalent to
planned processc and ((realizesop some service consumer rolec) and (realizesop some service provider rolec))
has super-classes
planned processc
has partop some planned processc
has sub-classes
material servicec
is in domain of
provides_service_consumer_withop

service consumer rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000941

has super-classes
rolec
inheres inop some Homo sapiensc or organizationc

service provider rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000947

has super-classes
rolec
realized inop only planned processc
inheres inop some Homo sapiensc or organizationc
has sub-classes
material supplier rolec

setting datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000140

has super-classes
data itemc
has sub-classes
storage temperature settingc

settlement part of addressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000029

has super-classes
textual entityc
is aboutop some geographic locationc
has sub-classes
settlement part of address biobank contactc, settlement part of address of sample collection or study contactc

settlement part of address biobank contactc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000030

is equivalent to
settlement part of addressc and (part ofop some postal addressc and (is contact information aboutop some Homo sapiensc and (is member of organizationop some biobank organizationc) and (bearer ofop some biobank contact rolec)))
has super-classes
settlement part of addressc

settlement part of address of sample collection or study contactc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000002

is equivalent to
settlement part of addressc and (part ofop some postal addressc and (is contact information aboutop some Homo sapiensc and (((part ofop some object aggregatec) and (administratesop some object aggregatec and (has partop only specimenc))) or ((bearer ofop some sample collection or study contact rolec) and (participates inop some study design executionc)))))
has super-classes
settlement part of addressc

sex cord-gonadal stromal tumorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_192

has super-classes
ovarian cancerc

sex inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002561

has super-classes
inclusion criterionc

sigmoid colectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000120

has super-classes
colectomyc

sigmoid colonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001159

has super-classes
organ partc

sigmoid colon specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002550

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some sigmoid colonc))
has super-classes
specimen from organismc

single layer subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000009

has super-classes
subset ontology modulec

sister clinical history of cancerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002378

has super-classes
family clinical history of cancerc

sitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000029

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
immaterial entityc
has sub-classes
geographic locationc
is disjoint with
spatial regionc

sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000117

has super-classes
morphologyc
has sub-classes
3-D extentc, heightc

skeletal muscle tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001134

has super-classes
tissuec
has sub-classes
gastrocnemiusc

skeletal muscle tissue specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002519

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some skeletal muscle tissuec))
has super-classes
specimen from organismc

skin of bodyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002097

has super-classes
material anatomical entityc
has sub-classes
Skin of left legc, Skin of right legc, suprapubic skinc

skin of body specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002526

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some skin of bodyc))
has super-classes
specimen from organismc
has sub-classes
suprapubic skin specimenc

Skin of left legc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FMA_37830

has super-classes
skin of bodyc

Skin of right legc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FMA_37829

has super-classes
skin of bodyc

skinpunch biopsyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002663

has super-classes
biopsyc
has_specified_inputop some integumentc

small intestinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002108

has super-classes
organ partc

smoking behaviorc back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/efo/EFO_0004318

has super-classes
biological_processc
planned processc
has_specified_inputop some cigarettec or cigarc or pipe tobaccoc
has sub-classes
pipe smoking behaviorc

smoking end datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000054

has super-classes
time measurement datumc
is aboutop some smoking behaviorc

smoking pipec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000049

has super-classes
containerc
has functionop some contain functionc

smoking start datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000051

has super-classes
time measurement datumc
is aboutop some smoking behaviorc

social identity information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000204

Contributors:
Amanda Hicks
Mathias Brochhausen
Matthew Diller
Sarah Bost
William R. Hogan
We include (i)-(iii) to acknowledge that there are different senses of "identify" that are relevant here, and that we may not always be sure which sense the person concretizing the social identity information content entity intended. While (i) concerns how one thinks of oneself, (ii) and (iii) are more focused on one's interactions with others. Importantly, some choose not to share with others how they identify in the sense of (i). For example, one can consider oneself to be some certain gender without either wanting others to know or choosing to present oneself in a corresponding way. We distinguish (ii) and (iii) because one can prefer to be regarded some certain way without attempting to present oneself in any corresponding way.
has super-classes
information content entityc
has sub-classes
ethnic identity information content entityc, gender identity information content entityc, racial identity information content entityc

sodium citratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_53258

has super-classes
molecular entityc
has roleop some blood additive rolec

Solid Lung Adenocarcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C5651

has super-classes
lung adenocarcinomac

solid support functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000399

has super-classes
functionc

son clinical history of cancerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002379

has super-classes
family clinical history of cancerc

SOP adjustmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000075

has super-classes
protocolc

SOP memorandumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000074

has super-classes
textual entityc

South Africanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C126530

has super-classes
populationc

South Asianc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C41263

has super-classes
populationc

Southeast Asianc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C126533

has super-classes
populationc

sovereign statec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000396

has super-classes
governmental organizationc

spatial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000006

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
immaterial entityc
has sub-classes
one-dimensional spatial regionc, three-dimensional spatial regionc, two-dimensional spatial regionc, zero-dimensional spatial regionc
is disjoint with
sitec, continuant fiat boundaryc

spatiotemporal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000011

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
occurrentc
is disjoint with
temporal regionc

species subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000012

has super-classes
subset ontology modulec

specifically dependent continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000020

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
continuantc
has sub-classes
family relationshipc, qualityc, realizable entityc, relationship between person signing research authorization and specimen donorc
is in domain of
concretizesop
is in range of
bearer ofop, is concretized asop
is disjoint with
independent continuantc, generically dependent continuantc

specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100051

is equivalent to
material entityc and (has roleop some specimen rolec)
has super-classes
material entityc
has sub-classes
material samplec, microdissected specimenc, normal specimenc, processed specimenc, specimen from organismc, specimen meeting specificationc, specimen with known storage statec, specimen with pre- or post-mortem statusc, swab specimenc

specimen barcodec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FLU_0001019

has super-classes
specimen IDc
has sub-classes
blood plasma specimen barcodec, cell pellet specimen barcodec, cryovial specimen barcodec, specimen randomization key IDc, vacutainer specimen barcodec

specimen collected with specific collection packetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000086

has super-classes
specimen from organismc

specimen collection objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000684

has super-classes
objective specificationc

specimen collection processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000659

is equivalent to
planned processc and (achieves_planned_objectiveop some specimen collection objectivec)
has super-classes
planned processc
has_specified_outputop some specimenc
has_specified_inputop some material entityc
has sub-classes
collecting specimen from organismc, collecting specimen with swabc

specimen collection quality review commentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000441

has super-classes
textual entityc

specimen collection time measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001619

has super-classes
time measurement datumc
is aboutop some process boundaryc and (startsop some specimen collection processc)

specimen containerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002088

is equivalent to
containerc and (has functionop some containing a specimen functionc)
has super-classes
containerc
has sub-classes
PAXgene DNA vacutainerc, PAXgene RNA vacutainerc, blood specimen container with EDTAc

specimen disease state datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_00001006

has super-classes
data itemc
is aboutop some specimenc
has sub-classes
diseased state specimen datumc, mixed state specimen datumc, normal state specimen datumc

specimen donorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001079

is equivalent to
Homo sapiensc and (bearer ofop some rolec and (realized inop some specimen collection processc))
has super-classes
Homo sapiensc

specimen donor body refrigerated indicatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000092

has super-classes
data itemc

specimen donor clinical data entry was completedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000448

has super-classes
information content entityc

specimen donor intraoperative blood loss at end of surgery volume measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000144

has super-classes
specimen donor intraoperative blood loss volume measurement datumc

specimen donor intraoperative blood loss prior to organ excision volume measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000143

has super-classes
specimen donor intraoperative blood loss volume measurement datumc

specimen donor intraoperative blood loss volume measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000142

has super-classes
measurement datumc
has sub-classes
specimen donor intraoperative blood loss at end of surgery volume measurement datumc, specimen donor intraoperative blood loss prior to organ excision volume measurement datumc

specimen donor intraoperative urine excreted at end of surgery volume measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000147

has super-classes
specimen donor intraoperative urine excreted volume measurement datumc

specimen donor intraoperative urine excreted prior to organ excision volume measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000146

has super-classes
specimen donor intraoperative urine excreted volume measurement datumc

specimen donor intraoperative urine excreted volume measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000145

has super-classes
measurement datumc
has sub-classes
specimen donor intraoperative urine excreted at end of surgery volume measurement datumc, specimen donor intraoperative urine excreted prior to organ excision volume measurement datumc

specimen donor's date of birthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000482

has super-classes
date of birthc

specimen family creationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002095

has super-classes
material processingc
material processingc and (has_specified_inputop some specimenc) and (has_specified_outputop some specimens derived from shared ancestorc)

specimen freezingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001045

is equivalent to
freezing storagec and (has participantop some specimenc)
has super-classes
freezing storagec

specimen from organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001479

is equivalent to
(has roleop some specimen rolec) and (derives fromop some material anatomical entityc or anatomical clusterc)
has super-classes
specimenc
has sub-classes
adipose tissue specimenc, adrenal gland specimenc, amniotic fluid specimenc, aorta specimenc, atrial appendage specimenc, bodily fluid specimenc, bone marrow specimenc, brain specimenc, breast specimenc, cerebellum specimenc, cerebral cortex specimenc, chorionic villus specimenc, colon specimenc, coronary artery specimenc, cortex of kidney specimenc, digestive system fluid or secretion specimenc, esophagogastric junction specimenc, esophagus mucosa specimenc, esophagus muscularis mucosa specimenc, eye specimenc, feces specimenc, hair specimenc, heart specimenc, ileum specimenc, liver specimenc, lung specimenc, minor salivary gland specimenc, nasopharynx specimenc, omentum specimenc, ovary specimenc, pancreas specimenc, pituitary gland specimenc, placenta specimenc, prostate gland specimenc, renal medulla specimenc, respiratory system specimenc, saliva specimenc, sample from organismc, semen specimenc, sigmoid colon specimenc, skeletal muscle tissue specimenc, skin of body specimenc, specimen collected with specific collection packetc, spleen specimenc, sputum specimenc, stomach specimenc, testis specimenc, throat specimenc, thyroid gland specimenc, tibial artery specimenc, tibial nerve specimenc, upper respiratory tract specimenc, urethra specimenc, urinary bladder specimenc, urine specimenc, uterine cervix specimenc, uterus specimenc, vagina specimenc, vitreous humor specimenc

specimen gross appearancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000208

has super-classes
data itemc
has sub-classes
specimen gross appearance of tumorc

specimen gross appearance of metastatic tumorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002005

has super-classes
specimen gross appearance of tumorc

specimen gross appearance of tumorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000209

has super-classes
specimen gross appearancec
has sub-classes
specimen gross appearance of metastatic tumorc, specimen gross appearance of tumor centerc, specimen gross appearance of tumor edgec

specimen gross appearance of tumor centerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002006

has super-classes
specimen gross appearance of tumorc

specimen gross appearance of tumor edgec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002007

has super-classes
specimen gross appearance of tumorc

specimen IDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001046

has super-classes
identifierc
(has partop some centrally registered identifier symbolc) and (is aboutop some specimenc)
has sub-classes
FFPE tissue cassette IDc, parent specimen IDc, specimen barcodec

specimen image IDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000385

has super-classes
identifierc

specimen integrityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002001

is equivalent to
wholenessc and (inheres inop only specimenc)
has super-classes
wholenessc

specimen measurementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001038

has super-classes
measurement datumc
measurement datumc and (has partop some length measurement datumc) and (is aboutop some specimenc)

specimen measurement specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001048

A specification (often abbreviated as spec) may refer to an explicit set of requirements to be satisfied by a material, design, product, or service.
has super-classes
objective specificationc

specimen meeting specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001040

has super-classes
specimenc

specimen positionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002000

is equivalent to
positionc and (inheres inop only specimenc)
has super-classes
positionc

specimen preparation contactc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001042

has super-classes
personal namec
is aboutop some Homo sapiensc and ((participates inop some specimen collection processc) or (participates inop some material maintenancec)) and (bearer ofop some contact rolec)

specimen randomization key IDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000349

has super-classes
specimen barcodec

specimen receivingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000033

has super-classes
planned processc
has_specified_outputop some collection packetc and (located inop some Laboratoryc)

specimen receiving organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000273

has super-classes
rolec

specimen rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000112

has super-classes
rolec
inheres inop some material entityc and (is_specified_output_ofop some specimen collection processc)
has sub-classes
material sample rolec

specimen shipment received in good conditionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000280

has super-classes
information content entityc

specimen shipment received in poor conditionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000281

has super-classes
information content entityc

specimen slide IDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002003

has super-classes
identifierc

specimen surgical removalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001044

has super-classes
collecting specimen from organismc

specimen transport from OR to gross room issues or deviations from SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000416

has super-classes
textual entityc

specimen transport from OR to gross room SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000414

has super-classes
specimen transport SOPc

specimen transport from OR to gross room was performed as per SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000415

has super-classes
information content entityc

specimen transport SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000071

has super-classes
standard operating procedurec
has sub-classes
specimen transport from OR to gross room SOPc

specimen transporting organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000272

has super-classes
rolec

specimen was collected and stored in accordance with the specified SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000247

has super-classes
information content entityc

specimen was processed in accordance with the FFPE SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000381

has super-classes
specimen was processed in accordance with the specified SOPc

specimen was processed in accordance with the FFPE SOP including <1 hour delay to fixation and 23 hour time in fixativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000383

has super-classes
specimen was processed in accordance with the specified SOPc

specimen was processed in accordance with the specified SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000259

has super-classes
information content entityc
has sub-classes
specimen was processed in accordance with the FFPE SOPc, specimen was processed in accordance with the FFPE SOP including <1 hour delay to fixation and 23 hour time in fixativec

specimen weightc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002002

is equivalent to
mass measurement datumc and (is aboutop some specimenc)
has super-classes
mass measurement datumc

specimen with known storage statec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001472

is equivalent to
fresh specimenc or (specimenc and (is_specified_output_ofop some storagec))
has super-classes
specimenc
has sub-classes
agar stab specimenc, fresh specimenc, frozen specimenc, lyophilized specimenc, paraffin specimenc

specimen with pre- or post-mortem statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001506

is equivalent to
is_specified_output_ofop some specimen collection processc and (has_specified_inputop some organismc and (has qualityop some alivec or deadc))
has super-classes
specimenc
has sub-classes
pre-mortem specimenc

specimens derived from shared ancestorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002077

has super-classes
collection of specimensc

spleenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002106

has super-classes
material anatomical entityc

spleen specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002541

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some spleenc))
has super-classes
specimen from organismc

splenic flexure of colonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0022276

has super-classes
organ partc

sputumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0007311

has super-classes
organism substancec

sputum specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002508

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some sputumc))
has super-classes
specimen from organismc
has sub-classes
induced sputum specimenc

stainingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302887

has super-classes
material processingc
achieves_planned_objectiveop some material transformation objectivec
has sub-classes
H&E slide stainingc, IHC slide stainingc

standard operating procedurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000070

has super-classes
protocolc
has sub-classes
FFPE tissue block handling, tracking, and storage SOPc, FFPE tissue paraffin embedding SOPc, FFPE tissue processing SOPc, FFPE tissue section H&E staining and mounting SOPc, FFPE tissue section preparation SOPc, blood specimen collection and processing SOPc, case report form completion SOPc, receipt and dissection of surgical specimen SOPc, specimen transport SOPc, tissue procurement SOPc

start date of sampling for biobankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001007

It is denoted by Date in ISO-standard (8601) time format.
has super-classes
data itemc
data itemc and (is aboutop some one-dimensional temporal regionc and (has partop some has temporal occupantop some start of sampling specimens for biobankc))
is disjoint with
date of data entryc, date of data updatec, end date of sampling for biobankc

start of sampling specimens for biobankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001081

has super-classes
process boundaryc
part ofop some sampling specimens for biobankc

steroidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_35341

has super-classes
molecular entityc

stomachc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000945

has super-classes
material anatomical entityc

stomach specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002528

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some stomachc))
has super-classes
specimen from organismc

storagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302893

has super-classes
material maintenancec
achieves_planned_objectiveop some material maintenance objectivec
has_specified_inputop some material entityc
has sub-classes
agar stab storagec, freezing storagec, lyophilization storagec, paraffin storagec

storage temperature settingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001013

Examples: -18 °C to -35 °C, -60 °C to -85 °C, Liquid nitrogen, Room temperature etc
has super-classes
setting datumc

strand of hairc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001037

has super-classes
material anatomical entityc

streetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000041

has super-classes
material entityc

study designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500000

has super-classes
plan specificationc
has partop some protocolc
has sub-classes
case control study designc, cross sectional study designc, disease specific study designc, longitudinal study designc, population based study designc, quality control study designc, twin study designc

study design executionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000471

is equivalent to
planned processc and (realizesop some concretizesop some study designc)
has super-classes
planned processc
has sub-classes
omics experiment on specimenc

study proper namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000037

is equivalent to
identifierc and (designatesop some study design executionc)
has super-classes
identifierc

study subject survey datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001032

Examples: Individual Disease History, Individual History of Injuries, Medication, Perception of Health, Women's Health, Reproductive History, Familial Disease History, Life Habits/Behaviors, Sociodemographic Characteristics, Socioeconomic Characteristics, Physical Environment, Mental Health, Other.
has super-classes
survey datac
survey datac and (is aboutop some (bearer ofop some participant under investigation rolec) and (bearer ofop some donorc))

subnational entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000004

is equivalent to
governmental organizationc and (member ofop exactly 1 sovereign statec)
has super-classes
governmental organizationc
has sub-classes
geopolitical dependencyc

subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000006

has super-classes
ontology modulec
has sub-classes
analysis subset ontology modulec, curation subset ontology modulec, exclusion subset ontology modulec, import ontology modulec, ontology module subsetted by expressivityc, single layer subset ontology modulec, species subset ontology modulec

subtotal colectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000122

has super-classes
colectomyc

succinylcholine chloride (anhydrous)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_61219

has super-classes
molecular entityc

supracervical hysterectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000170

has super-classes
surgical procedurec

suprapubic skinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0036149

has super-classes
skin of bodyc

suprapubic skin specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002551

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some suprapubic skinc))
has super-classes
skin of body specimenc

surface HBV antibody assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002148

has super-classes
antigen specific antibodies assayc
(realizesop some analyte rolec and (inheres inop some immunoglobulin complexc and (has disposition to bindop some Hepatitis B virusc))) and (has_specified_inputop some immunoglobulin complexc and (has disposition to bindop some Hepatitis B virusc))

surgical biopsyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002657

has super-classes
biopsyc

surgical cancer treatmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002004

has super-classes
Cancer Therapeutic Procedurec

surgical ligature processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000084

has super-classes
planned processc

surgical methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000165

has super-classes
protocolc
has sub-classes
abdominal surgical methodc, laparoscopic surgical methodc, laparoscopically assisted vaginal surgical methodc, open surgical methodc, robotic surgical methodc, vaginal surgical methodc

surgical procedurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001041

has super-classes
planned processc
has sub-classes
abdominoperineal resectionc, bilateral oophorectomyc, bilateral salpingo-oophorectomyc, colectomyc, hysterectomy with bilateral salpingo-oophorectomyc, hysterectomy with left salpingo-oophorectomyc, hysterectomy with right salpingo-oophorectomyc, left kidney mass excisionc, left lung lobectomyc, left lung mass excisionc, left nephroureterectomyc, left oophorectomyc, left partial nephrectomyc, left pneumonectomyc, left radical nephrectomyc, left salpingo-oophorectomyc, low anterior resectionc, pelvic exenterationc, pelvic mass excisionc, proctectomyc, right kidney mass excisionc, right lung lobectomyc, right lung mass excisionc, right nephroureterectomyc, right oophorectomyc, right partial nephrectomyc, right pneumonectomyc, right radical nephrectomyc, right salpingo-oophorectomyc, supracervical hysterectomyc, wedge resection of left lungc, wedge resection of right lungc

survey datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000060

is equivalent to
data itemc and (is_specified_output_ofop only survey executionc)
has super-classes
data itemc
has sub-classes
study subject survey datac

survey executionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001035

is equivalent to
planned processc and (realizesop some concretizesop some survey plan specificationc) and (has_specified_outputop some survey datac)
has super-classes
planned processc

survey plan specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001025

has super-classes
plan specificationc

swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002599

is equivalent to
is_specified_output_ofop some collecting specimen with swabc
has super-classes
specimenc
has sub-classes
areolar swab specimenc, breast swab specimenc, cheek swab specimenc, environmental swab specimenc, erythrocyte specimenc, fecal swab specimenc, leukocyte specimenc, nasal swab specimenc, nasopharyngeal swab specimenc, oral swab specimenc, oropharyngeal swab specimenc, rectal swab specimenc, reticulocyte specimenc, tongue swab specimenc, vagina swab specimenc

sweatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001089

has super-classes
bodily fluidc

sweat specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002509

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some sweatc))
has super-classes
bodily fluid specimenc

symbolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000028

has super-classes
information content entityc
has sub-classes
centrally registered identifier symbolc, lot numberc, numeralc, version numberc

synovial fluidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001090

has super-classes
bodily fluidc

synovial fluid specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002510

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some synovial fluidc))
has super-classes
bodily fluid specimenc

tailc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002415

has super-classes
material anatomical entityc

tail biopsyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002661

has super-classes
biopsyc
has_specified_inputop some tailc

target of material additionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_1110109

is equivalent to
has roleop some target of material addition rolec
has super-classes
material entityc

target of material addition rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000444

has super-classes
rolec
inheres inop some material entityc
realized inop only adding a material entity into a targetc

taxonomic bridge ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000016

has super-classes
bridge ontology modulec

telephone numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000021

MB: This class should probably be a subclass to CRID. However, the textual definition of CRID right now states that each instance has the CRID identifier as a part. This is not the case for telephone numbers. Therefore, they cannot be subsumed under CRID now. I am looking into changing IAO accordingly. Once that is done, the class ought to be a subclass of CRID.
has super-classes
textual entityc
has partop only numeralc
has sub-classes
telephone number of biobank contactc, telephone number of sample collection or study contactc

telephone number of biobank contactc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000022

is equivalent to
telephone numberc and (is contact information aboutop some Homo sapiensc and (is member of organizationop some biobank organizationc) and (bearer ofop some biobank contact rolec))
has super-classes
telephone numberc

telephone number of sample collection or study contactc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000025

is equivalent to
telephone numberc and (is contact information aboutop some Homo sapiensc and (((part ofop some object aggregatec) and (administratesop some object aggregatec and (has partop only specimenc))) or ((bearer ofop some sample collection or study contact rolec) and (participates inop some study design executionc))))
has super-classes
telephone numberc

temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000146

has super-classes
physical qualityc
has sub-classes
frozenc

temperature in gross room when specimen arrived from ORc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000417

has super-classes
scalar measurement datumc

temperature in lab when blood specimen was receivedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000241

has super-classes
scalar measurement datumc

temperature measurement assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002140

has super-classes
assayc
has_specified_outputop some measurement datumc and (has value specificationop some temperature value specificationc)
has sub-classes
internal body temperature measurement assayc

temperature of specimen collection packet at time of receiptc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000278

has super-classes
scalar measurement datumc

temperature regulatingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001036

As per placing the term as a planned process, it can be argued that nature does play a role in the final output of the actual temperature.
has super-classes
planned processc

temperature unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000005

has super-classes
measurement unit labelc
has members
degree Celsiusni, degree Fahrenheitni

temperature value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002138

has super-classes
value specificationc
(specifies value ofop some temperaturec) and (has measurement unit labelop only temperature unitc)

template generated ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000015

has super-classes
generated ontology modulec

temporal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000008

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
occurrentc
has sub-classes
one-dimensional temporal regionc, zero-dimensional temporal regionc
is disjoint with
spatiotemporal regionc, processc, process boundaryc

test tubec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000836

has super-classes
containerc
has functionop some contain functionc

testisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000473

has super-classes
material anatomical entityc

testis specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002552

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some testisc))
has super-classes
specimen from organismc

testosterone hormone replacement therapyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000542

has super-classes
hormone replacement therapyc

Tetrapodac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32523

has super-classes
Euteleostomic
has sub-classes
Amniotac

textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000300

has super-classes
information content entityc
has sub-classes
FFPE slide findings that do not meet microscopic analysis criteriac, FFPE slide inconsistencies with findings of diagnostic pathology reportc, SOP memorandumc, biobank description in englishc, comment from blood specimen collectionc, comment from blood specimen processingc, comment from blood specimen storagec, comment from clinical data entry formc, comment from pathology review of FFPE slidec, comment from specimen receiptc, comment from tissue procurementc, comment on FFPE slide imagec, comment on FFPE tissue block storagec, comment on FFPE tissue processingc, comment on deviations from H&E equipment maintenance SOPc, comment on deviations from microtome daily maintenance SOPc, comment on deviations from water bath daily maintenance SOPc, comment on deviations in specimen dimensions from a tissue procurement SOPc, comment on exposure to environmental and workplace carcinogensc, comment on gross evaluation of resected tissue specimenc, comment on maintenance discrepancy from manufacturer recommendationsc, comment on paraffin embedding of FFPE tissuec, comment on preparation of FFPE H&E stained slidec, comment on preparation of FFPE tissue sectionc, comment on specimen integrity after transportc, comment on the use of hormonally based birth controlc, comment on the use of hormone replacement therapyc, comment on tissue specimen processingc, comments related to research authorization processc, conclusion textual entityc, description of glass slide chargec, document titlec, explanation of why tumor tissue specimen was not released to a biobankc, intra-settlement specification part of addressc, non-cellular component of tumor slide specimen descriptionc, postal addressc, reason for not taking a photograph of resected tissue in pathology gross roomc, sample collection or study aim descriptionc, sarcomatoid features observed on FFPE slidec, serology alert associated with specimen donorc, settlement part of addressc, specimen collection quality review commentc, specimen transport from OR to gross room issues or deviations from SOPc, telephone numberc, transplant alert associated with specimen donorc

thiopental sodiumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_9561

has super-classes
molecular entityc

three-dimensional spatial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000028

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
spatial regionc
is disjoint with
two-dimensional spatial regionc, zero-dimensional spatial regionc, one-dimensional spatial regionc

throatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000341

has super-classes
material anatomical entityc

throat specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000003

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some throatc))
has super-classes
specimen from organismc

thyroid glandc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002046

has super-classes
material anatomical entityc

thyroid gland specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002537

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some thyroid glandc))
has super-classes
specimen from organismc

tibial arteryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0007610

has super-classes
material anatomical entityc
has sub-classes
Left posterior tibial arteryc

tibial artery specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002525

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some tibial arteryc))
has super-classes
specimen from organismc

tibial nervec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001323

has super-classes
anatomical clusterc
has sub-classes
Left tibial nervec, Right tibial nervec

tibial nerve specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002539

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some tibial nervec))
has super-classes
specimen from organismc

timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000165

has super-classes
physical qualityc
has sub-classes
agec

time donor body refrigerated measurementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000093

has super-classes
time measurement datumc

time in FFPE fixative measurementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000371

has super-classes
time in fixative measurementc

time in fixative measurementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000060

has super-classes
time measurement datumc
has sub-classes
time in FFPE fixative measurementc

time in formalin measurementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001043

has super-classes
time measurement datumc
is aboutop some (one-dimensional temporal regionc or zero-dimensional temporal regionc) and (has temporal occupantop some sample handlingc and (has participantop some specimenc and (located inop some formaldehydec)))

time measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000416

has super-classes
scalar measurement datumc
(has measurement unit labelop only time unitc) and (is duration ofop only processc)
has sub-classes
Duration of fasting by specimen donor prior to surgeryc, FFPE alcohol stage durationc, FFPE clearing agent durationc, FFPE dehydration process durationc, FFPE tissue section H&E staining in oven durationc, age measurement datumc, date of birthc, date of diagnosisc, duration of greater than moderate alcohol consumption prior to enrollmentc, duration of hormonal birth control use prior to enrollmentc, duration of hormone replacement therapy prior to enrollmentc, duration time of smokingc, in vivo intraoperative ischemic periodc, measurement of time between FFPE tissue processor cycle completion and embeddingc, placement of tissue cassette in FFPE fixative delay durationc, smoking end datec, smoking start datec, specimen collection time measurement datumc, time donor body refrigerated measurementc, time in fixative measurementc, time in formalin measurementc, time since chemotherapy was received prior to surgeryc, time since hormonal therapy was received prior to surgeryc, time since immunotherapy was received prior to surgeryc, time since last usage of hormonal birth controlc, time since last usage of hormone replacement therapyc, time since radiation therapy was received prior to surgeryc, total time FFPE freshly poured blocks were cooledc
is in domain of
is duration ofop
is in range of
has time stampop

time of blood cell pellet transfer to storagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000265

has super-classes
data itemc

time of blood plasma specimen placement on dry icec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000254

has super-classes
data itemc

time of blood plasma specimen transfer to freezerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000256

has super-classes
data itemc

time of blood processingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000249

has super-classes
data itemc

time of completion of blood cell pellet processingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000264

has super-classes
data itemc

time of first clamp for specimen removalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000129

has super-classes
data itemc

time of first surgical incisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000117

has super-classes
data itemc

time of receipt for pathologist processingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000284

has super-classes
data itemc

time of receiving specimen transportc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000277

has super-classes
data itemc

time of second clamp for specimen removalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000130

has super-classes
data itemc

time of specimen freezingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001049

has super-classes
data itemc
data itemc and (is aboutop some one-dimensional temporal regionc and (has temporal occupantop some specimen freezingc))
has sub-classes
time of specimen freezing at -70 to -80 degrees Cc, time of specimen freezing at approximately -20 degrees Cc

time of specimen freezing at -70 to -80 degrees Cc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000245

has super-classes
time of specimen freezingc

time of specimen freezing at approximately -20 degrees Cc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000244

has super-classes
time of specimen freezingc

time of specimen placement on dry ice for transportc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000268

has super-classes
data itemc

time of specimen transfer from pathology gross room to a biobankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000436

has super-classes
data itemc

time of specimen transportc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000271

has super-classes
data itemc

time of surgical ligature for specimen collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000082

has super-classes
data itemc

time of surgical removal of specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001050

has super-classes
data itemc
data itemc and (is aboutop some one-dimensional temporal regionc and (has temporal occupantop some specimen surgical removalc))
has sub-classes
first tissue removed timec

time since chemotherapy was received prior to surgeryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000500

has super-classes
time measurement datumc

time since hormonal therapy was received prior to surgeryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000502

has super-classes
time measurement datumc

time since immunotherapy was received prior to surgeryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000501

has super-classes
time measurement datumc

time since last usage of hormonal birth controlc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000527

has super-classes
time measurement datumc

time since last usage of hormone replacement therapyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000530

has super-classes
time measurement datumc

time since radiation therapy was received prior to surgeryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000499

has super-classes
time measurement datumc

time specimen left operating roomc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000153

has super-classes
data itemc

time specimen place in stabilizerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000359

has super-classes
data itemc

time stamped measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000582

has super-classes
measurement datumc
(has time stampop some time measurement datumc) and (has measurement datumop some measurement datumc)
has sub-classes
first temperature recorded in operating room of specimen donorc, second temperature recorded in operating room of specimen donorc
is in domain of
has measurement datumop, has time stampop
is disjoint with
countc

time unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000003

has super-classes
measurement unit labelc
has members
dayni, hourni, minuteni, monthni, secondni, weekni, yearni

timing of scoring performance statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000516

has super-classes
one-dimensional temporal regionc
has sub-classes
post adjuvant performance status scorec, pre-adjuvant performance status scorec, preoperative performance status scorec

tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000479

has super-classes
material anatomical entityc
has sub-classes
adipose tissuec, bone marrowc, esophagus muscularis mucosac, skeletal muscle tissuec

tissue collection timing and placed in fixative inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000498

has super-classes
inclusion criterionc

tissue procurement SOPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000072

has super-classes
standard operating procedurec

tissue section thicknessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002197

has super-classes
length measurement datumc

tissue specimen suitability for molecular analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002013

has super-classes
conclusion textual entityc

tobaccoc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000056

has super-classes
Eukaryotac

tobacco materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000057

is equivalent to
processed materialc and (derives fromop some tobaccoc)
has super-classes
processed materialc
has sub-classes
chewing tobaccoc, cigarc, cigarettec, pipe tobaccoc

Tobacco Smoking Historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C29719

has super-classes
information content entityc
has sub-classes
current reformed smoker for less than 15 years historyc, current reformed smoker for more than 15 years historyc, current smoker historyc, lifelong non-smoker historyc

tonguec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001723

has super-classes
material anatomical entityc

tongue swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002610

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen with swabc and (has_specified_inputop some tonguec)))
has super-classes
swab specimenc

top priority tumor specimen was obtained and processed with a particular FFPE fixation delay protocolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000444

has super-classes
information content entityc

total colectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000123

has super-classes
colectomyc

total time FFPE freshly poured blocks were cooledc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000313

has super-classes
time measurement datumc

transfer functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000383

has super-classes
functionc

transplant alert associated with specimen donorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000351

has super-classes
textual entityc

transverse colectomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000124

has super-classes
colectomyc

transverse colonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001157

has super-classes
organ partc

trash containerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000014

has super-classes
containerc
has functionop some contain functionc

treatmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000090

has super-classes
planned processc
has sub-classes
Cancer Therapeutic Procedurec, Prior Chemotherapyc, Prior Hormone Therapyc, Prior Immunotherapyc, Prior Radiation Therapyc, hormone replacement therapyc

Tubulocystic Renal Cell Carcinomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C126303

has super-classes
renal carcinomac

tumor specimen satisfied criteria of necrosis percentage and tumor contentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000449

has super-classes
information content entityc

tumor tissue was released to the biobankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000428

has super-classes
information content entityc

twin study designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001024

has super-classes
study designc
is disjoint with
case control study designc, cross sectional study designc, longitudinal study designc, population based study designc, quality control study designc

two-dimensional continuant fiat boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000146

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
continuant fiat boundaryc
is disjoint with
one-dimensional continuant fiat boundaryc

two-dimensional spatial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000009

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
spatial regionc
is disjoint with
three-dimensional spatial regionc

Type II diabetes colorectal cancer risk factorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000536

has super-classes
colorectal cancer risk factorc

ultrasound-guided needle biopsyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002653

has super-classes
image guided biopsyc

umbilical cord bloodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0012168

has super-classes
bloodc

umbilical cord blood specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000012

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some umbilical cord bloodc))
has super-classes
bodily fluid specimenc

uncharged glass slide indicatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000325

has super-classes
information content entityc

uncle clinical history of cancerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002380

has super-classes
family clinical history of cancerc

unilateral oophorectomy historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002399

has super-classes
gynecologic surgery historyc

unique resource locatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000019

has super-classes
centrally registered identifierc
has sub-classes
biobank's unique resource locatorc

unknown clinical history of cancerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002370

has super-classes
clinical historyc

upper respiratory tractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001557

has super-classes
material anatomical entityc

upper respiratory tract specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000006

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some upper respiratory tractc))
has super-classes
specimen from organismc

urethrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000057

has super-classes
material anatomical entityc

urethra specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000001

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some urethrac))
has super-classes
specimen from organismc

urinary bladderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001255

has super-classes
material anatomical entityc

urinary bladder specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002524

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some urinary bladderc))
has super-classes
specimen from organismc

urinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001088

has super-classes
organism substancec

urine specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000651

has super-classes
specimen from organismc
derives fromop some urinec
has roleop some specimen rolec
is_specified_output_ofop some collecting specimen from organismc

use of medication inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002558

has super-classes
inclusion criterionc

uterine cervixc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000002

has super-classes
material anatomical entityc

uterine cervix specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000000

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some uterine cervixc))
has super-classes
specimen from organismc

uterusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000995

has super-classes
organ partc

uterus specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002553

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some uterusc))
has super-classes
specimen from organismc

vacutainerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000032

has super-classes
containerc

vacutainer specimen barcodec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000243

has super-classes
specimen barcodec

vacuum-assisted biopsyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002745

has super-classes
needle biopsyc
has_specified_inputop some vacuum-assisted biopsy needlec

vacuum-assisted biopsy needlec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002679

has super-classes
needlec
has functionop some transfer functionc

vaginac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000996

has super-classes
organ partc

vagina specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002554

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some vaginac))
has super-classes
specimen from organismc

vagina swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002611

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen with swabc and (has_specified_inputop some vaginac)))
has super-classes
swab specimenc

vaginal ring-based hormonal birth control methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000525

has super-classes
Birth Control Methodc

vaginal surgical methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000167

has super-classes
surgical methodc

value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001933

has super-classes
information content entityc
has sub-classes
RNA Integrity Number value specificationc, categorical value specificationc, maximum age value specificationc, minimum age value specificationc, scalar value specificationc, temperature value specificationc, volume value specificationc
is in domain of
has specified numeric valuedp, has specified valuedp, specifies value ofop
is in range of
has value specificationop

vecuroniumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_9939

has super-classes
molecular entityc

venereal disease research laboratory testc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002155

has super-classes
analyte assayc
(realizesop some analyte rolec and (inheres inop some immunoglobulin complexc)) and (has_specified_inputop some immunoglobulin complexc)

venous bloodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0013756

has super-classes
bloodc

venous blood specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000014

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some venous bloodc))
has super-classes
bodily fluid specimenc

version numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000129

has super-classes
symbolc

Vertebrata <vertebrates>c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7742

has super-classes
Bilateriac
has sub-classes
Euteleostomic

viabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000169

has super-classes
organismal qualityc
has sub-classes
alivec, deadc

Virusesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10239

has super-classes
organismc
has sub-classes
Hepacivirus Cc, Hepatitis B virusc, Herpesviridaec, Lentivirusc

vital sign blood pressure variance early in organ excisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000132

has super-classes
data itemc

vital sign blood pressure variance late in organ excisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000133

has super-classes
data itemc

vitreous humorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001797

has super-classes
organism substancec

vitreous humor specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002511

is equivalent to
(specimenc and (is_specified_output_ofop some collecting specimen from organismc) and (derives fromop some vitreous humorc))
has super-classes
specimen from organismc

volumec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000918

has super-classes
3-D extentc

volume measurement assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002141

has super-classes
assayc
has_specified_outputop some measurement datumc and (has value specificationop some volume value specificationc)

volume unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000095

has super-classes
measurement unit labelc

volume value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002139

has super-classes
value specificationc
(specifies value ofop some volumec) and (has measurement unit labelop only volume unitc)

Wall of distal part of ileumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FMA_17181

has super-classes
organ partc

water bath maintenance frequencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000330

has super-classes
information content entityc
has sub-classes
daily water bath maintenancec

wedge resection of left lungc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000192

has super-classes
surgical procedurec

wedge resection of right lungc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000193

has super-classes
surgical procedurec

weightc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000128

has super-classes
physical qualityc

weight of frozen tissue specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000362

has super-classes
mass measurement datumc

Western Europeanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C77817

has super-classes
Europeanc

wholenessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001442

has super-classes
morphologyc
has sub-classes
specimen integrityc

willingness to be contacted for a research studyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000488

has super-classes
information content entityc

worker rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000116

has super-classes
investigation agent rolec
has sub-classes
human subject recuiter rolec, lab technician rolec

xylenec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_27338

has super-classes
molecular entityc

zero-dimensional continuant fiat boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000147

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
continuant fiat boundaryc
is disjoint with
one-dimensional continuant fiat boundaryc

zero-dimensional spatial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000018

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
spatial regionc
is disjoint with
three-dimensional spatial regionc

zero-dimensional temporal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000148

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
temporal regionc
is disjoint with
one-dimensional temporal regionc

Object Properties

2D boundary ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002000

is inverse of
has 2D boundaryop

achieves_planned_objectiveop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000417

has domain
planned processc
has range
objective specificationc
is inverse of
objective_achieved_byop

administratesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000009

A definition of "tranfers" object property can be found in d-acts: http:purl.obolibrary.org/iao/d-acts.owl

has characteristics: asymmetric

has domain
Homo sapiensc or organizationc or collection of humansc or aggregate of organizationsc
has range
material entityc or information content entityc

bearer ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000053

has sub-properties
has dispositionop, has functionop, has qualityop, has roleop
has range
specifically dependent continuantc
is inverse of
inheres inop

concretizesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000059

It is recommended to not use this if possible in OMRSE. According to OntoBee this relation has been obsoleted and replaced with 'concretization of at all times'. As of Dec. 2, 2013 iao-main still uses this relation.
has super-properties
top object propertyop
has domain
specifically dependent continuantc
has range
generically dependent continuantc
is inverse of
is concretized asop

contains processop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000067

is defined by
http://purl.obolibrary.org/obo/bfo.owl
Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant
has sub-properties
has historyop
is inverse of
occurs inop

denoted byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000235

has domain
entityc
has range
information content entityc
is inverse of
denotesop

denotesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000219

has super-properties
is aboutop
has domain
information content entityc
has range
entityc
is inverse of
denoted byop

derives fromop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001000

has super-properties
top object propertyop
has domain
independent continuantc
has range
independent continuantc
is inverse of
derives intoop

derives intoop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001001

is inverse of
derives fromop

designatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020012

has characteristics: asymmetric, irreflexive

has domain
information content entityc
has range
entityc
is inverse of
is designated byop

disposition ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000092

has super-properties
inheres inop
is inverse of
has dispositionop

function ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000079

has super-properties
inheres inop
has domain
functionc
is inverse of
has functionop

has 2D boundaryop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002002

has domain
material entityc
has range
immaterial entityc
is inverse of
2D boundary ofop

has actual loadop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000038

has domain
containerc
has range
measurement datumc

has componentop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002180

has super-properties
has partop

has dispositionop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000091

has super-properties
bearer ofop
has domain
independent continuantc
has range
dispositionc
is inverse of
disposition ofop

has disposition to bindop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001637

has characteristics: symmetric

has domain
material entityc
has range
material entityc

has functionop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000085

has super-properties
bearer ofop
has domain
independent continuantc
has range
functionc
is inverse of
function ofop

has grainop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000643

has super-properties
has partop

has historyop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000185

is defined by
http://purl.obolibrary.org/obo/bfo/2012-07-20/bfo.owl

has characteristics: functional, inverse functional

has super-properties
contains processop
has domain
material entityc
has range
processc
is inverse of
history ofop

has inputop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002233

has super-properties
has participantop

has maximum capacityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000037

has domain
containerc
has range
measurement datumc

has measurement datumop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000583

has super-properties
has partop
has domain
time stamped measurement datumc
has range
measurement datumc and (not (time measurement datumc))

has measurement unit labelop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000039

has characteristics: functional

has super-properties
has partop
has range
measurement unit labelc

has memberop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002351

has characteristics: irreflexive

has super-properties
has partop
is inverse of
member ofop

has organization memberop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001688

has domain
organizationc
has range
Homo sapiensc or organizationc
is inverse of
is member of organizationop

has outputop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002234

has super-properties
has participantop

has partop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000051

has characteristics: transitive

has super-properties
top object propertyop
has sub-properties
has componentop, has grainop, has measurement datumop, has measurement unit labelop, has memberop, has time stampop, has value specificationop, provides_service_consumer_withop
is inverse of
part ofop

has participantop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000057

has sub-properties
has inputop, has outputop, has_specified_inputop, has_specified_outputop
has domain
occurrentc
has range
continuantc
is inverse of
participates inop

has qualityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000086

has super-properties
bearer ofop
has range
qualityc
is inverse of
quality ofop

has roleop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000087

has super-properties
bearer ofop
has domain
independent continuantc
has range
rolec
is inverse of
role ofop

has temporal occupantop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000156

is defined by
http://purl.obolibrary.org/obo/bfo/2012-07-20/bfo.owl
has range
occurrentc

has time stampop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000581

has characteristics: functional

has super-properties
has partop
has domain
time stamped measurement datumc
has range
time measurement datumc

has value specificationop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001938

has super-properties
has partop
has domain
information content entityc
has range
value specificationc

has_specified_inputop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000293

has super-properties
has participantop
has domain
planned processc
is inverse of
is_specified_input_ofop

has_specified_outputop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000299

has super-properties
has participantop
has domain
planned processc
is inverse of
is_specified_output_ofop

history ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000184

is defined by
http://purl.obolibrary.org/obo/bfo/2012-07-20/bfo.owl

has characteristics: functional, inverse functional

has super-properties
occurs inop
has domain
processc
has range
material entityc
is inverse of
has historyop

inheres inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000052

has characteristics: functional

has sub-properties
disposition ofop, function ofop, quality ofop, role ofop
is inverse of
bearer ofop

input ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002352

has super-properties
participates inop

is aboutop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000136

has sub-properties
denotesop, is contact information aboutop, is duration ofop, is quality measurement ofop, mentionsop, specifies value ofop
has domain
information content entityc

is concretized asop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000058

has super-properties
top object propertyop
has domain
generically dependent continuantc
has range
specifically dependent continuantc
is inverse of
concretizesop

is contact information aboutop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000042

has characteristics: asymmetric, irreflexive

has super-properties
is aboutop
has domain
information content entityc
has range
Homo sapiensc or organizationc

is designated byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020018

has characteristics: asymmetric, irreflexive

is inverse of
designatesop

is duration ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000413

has super-properties
is aboutop
has domain
time measurement datumc
has range
processc

is member of organizationop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000846

has domain
Homo sapiensc or organizationc
has range
organizationc
is inverse of
has organization memberop

is owned byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000048

has characteristics: asymmetric

has domain
material entityc or information content entityc
has range
Homo sapiensc or organizationc or collection of humansc or aggregate of organizationsc
is inverse of
ownsop

is quality measured asop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000417

is inverse of
is quality measurement ofop

is quality measurement ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000221

has super-properties
is aboutop
has domain
measurement datumc
has range
qualityc
is inverse of
is quality measured asop

is_specified_input_ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000295

has super-properties
participates inop
has range
planned processc
is inverse of
has_specified_inputop

is_specified_output_ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000312

has super-properties
participates inop
has range
planned processc
is inverse of
has_specified_outputop

is_supported_by_dataop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000124

has domain
conclusion based on datac
has range
data itemc

lacks_partop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/cl#lacks_part

located inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001025

has characteristics: transitive

has domain
independent continuantc
independent continuantc and (not (spatial regionc))
has range
independent continuantc
independent continuantc and (not (spatial regionc))
is inverse of
location ofop

location ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001015

has characteristics: transitive

is inverse of
located inop

member ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000012

member ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002350

has super-properties
part ofop
is inverse of
has memberop

mentionsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000142

has super-properties
is aboutop

negatively regulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002212

has super-properties
regulatesop

objective_achieved_byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000833

has domain
objective specificationc
has range
planned processc
is inverse of
achieves_planned_objectiveop

occurs inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000066

is defined by
http://purl.obolibrary.org/obo/bfo.owl
Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant
has sub-properties
history ofop
has domain
occurrentc
has range
independent continuantc
is inverse of
contains processop
has sub-property chains
part ofop o occurs inop
occurs inop o part ofop

output ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002353

has super-properties
participates inop

ownsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000008

has characteristics: asymmetric

has super-properties
top object propertyop
has domain
Homo sapiensc or organizationc or collection of humansc or aggregate of organizationsc
has range
material entityc or information content entityc
is inverse of
is owned byop

part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000050

has characteristics: transitive

has sub-properties
member ofop, startsop
is inverse of
has partop

participates inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000056

has sub-properties
input ofop, is_specified_input_ofop, is_specified_output_ofop, output ofop
has domain
continuantc
has range
occurrentc
is inverse of
has participantop

preceded byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000062

has characteristics: transitive

has super-properties
temporal relationop

precedesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000063

has characteristics: transitive

has super-properties
temporal relationop

provides_service_consumer_withop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000107

has super-properties
has partop
has domain
servicec

quality ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000080

has super-properties
inheres inop
is inverse of
has qualityop

realized inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000054

is defined by
http://purl.obolibrary.org/obo/bfo.owl
Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process
has super-properties
top object propertyop
has domain
realizable entityc
has range
processc
is inverse of
realizesop

realizesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000055

is defined by
http://purl.obolibrary.org/obo/iao.owl
Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process
has super-properties
top object propertyop
has domain
processc
has range
realizable entityc
is inverse of
realized inop

regulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002211

has characteristics: transitive

has sub-properties
negatively regulatesop
has domain
processc
has range
processc

results in formation ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002297

has super-properties
results_inop

results_inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000660

has sub-properties
results in formation ofop

role ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000081

has super-properties
inheres inop
is inverse of
has roleop

specifies value ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001927

has super-properties
is aboutop
has domain
value specificationc

startsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002223

has super-properties
part ofop
temporal relationop

temporal relationop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002222

A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations.
has sub-properties
preceded byop, precedesop, startsop
has range
occurrentc

top object propertyop back to ToC or Object Property ToC

IRI: http://www.w3.org/2002/07/owl#topObjectProperty

has sub-properties
concretizesop, derives fromop, has partop, is concretized asop, ownsop, realized inop, realizesop

Data Properties

has measurement valuedp back to ToC or Data Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000004

has characteristics: functional

has domain
scalar measurement datumc
has range
double

has specified numeric valuedp back to ToC or Data Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001937

has super-properties
has specified valuedp
has domain
value specificationc
has range
real

has specified valuedp back to ToC or Data Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002135

has sub-properties
has specified numeric valuedp
has domain
value specificationc

Named Individuals

0-non autolyisni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002009

belongs to
autolysis value specificationc

0: asymptomaticni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002361

belongs to
Eastern Cooperative Oncology Group score value specificationc

1-slight autolysisni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002010

belongs to
autolysis value specificationc

100: asymptomaticni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002364

belongs to
Karnofsky score vaue specificationc

1: symptomatic but fully ambulatoryni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002362

belongs to
Eastern Cooperative Oncology Group score value specificationc

2-moderate autolysisni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002011

belongs to
autolysis value specificationc

2: symptomatic but in bed less than 50% of the dayni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002359

belongs to
Eastern Cooperative Oncology Group score value specificationc

3-severe autolysisni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002012

belongs to
autolysis value specificationc

3: symptomatic in bed more than 50% of the day but not bed riddenni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002358

belongs to
Eastern Cooperative Oncology Group score value specificationc

40-50: symptomatic, in bed more than 50% of the day, but not bed riddenni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002367

belongs to
Karnofsky score vaue specificationc

4: bed riddenni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002360

belongs to
Eastern Cooperative Oncology Group score value specificationc

60-70: symptomatic but in bed less than 50% of the dayni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002366

belongs to
Karnofsky score vaue specificationc

80-90: symptomatic but fully ambulatoryni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002365

belongs to
Karnofsky score vaue specificationc

Advanced Instruments Inc. (AI Companies)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001375

belongs to
organizationc

AES Chemunexni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001428

belongs to
organizationc

Affymetrixni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000462

belongs to
organizationc

Agilentni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000765

belongs to
organizationc

Ambionni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000756

belongs to
organizationc

Antigenixni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001347

belongs to
organizationc

Apogee Flow Systemsni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001312

belongs to
organizationc

Applied Biosystemsni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000776

belongs to
organizationc

axiom holds for all timesni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/RO_0001901

Beckman Coulterni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001372

belongs to
organizationc

Becton Dickinson (BD Biosciences)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001321

belongs to
organizationc

Bentley Instrumentsni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001431

belongs to
organizationc

BIO-RADni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000754

belongs to
organizationc

Bruker Corporationni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000770

belongs to
organizationc

Bruker Daltonicsni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000779

belongs to
organizationc

cM0 (colon)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002291

belongs to
pathologic distant metastases stage for colon according to AJCC 7th editionc

cM0 (kidney)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002307

belongs to
pathologic distant metastases stage for kidney according to AJCC 7th editionc

cM0 (lung)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002299

belongs to
pathologic distant metastases stage for lung according to AJCC 7th editionc

cM0 (ovary)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002311

belongs to
pathologic distant metastases stage for ovary according to AJCC 7th editionc

cM1 (colon)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002292

belongs to
pathologic distant metastases stage for colon according to AJCC 7th editionc

cM1 (kidney)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002308

belongs to
pathologic distant metastases stage for kidney according to AJCC 7th editionc

cM1 (lung)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002300

belongs to
pathologic distant metastases stage for lung according to AJCC 7th editionc

cM1 (ovary)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002312

belongs to
pathologic distant metastases stage for ovary according to AJCC 7th editionc

cM1a (colon)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002293

belongs to
pathologic distant metastases stage for colon according to AJCC 7th editionc

cM1a (lung)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002301

belongs to
pathologic distant metastases stage for lung according to AJCC 7th editionc

cM1b (colon)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002294

belongs to
pathologic distant metastases stage for colon according to AJCC 7th editionc

cM1b (lung)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002302

belongs to
pathologic distant metastases stage for lung according to AJCC 7th editionc

colony forming unit per volumeni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000212

belongs to
concentration unitc

CytoBuoyni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001458

belongs to
organizationc

Cytopeiani back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001224

belongs to
organizationc

Dako Cytomationni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001338

belongs to
organizationc

dayni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000033

belongs to
time unitc

defined classni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000420

belongs to
denotator typec

degree Celsiusni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000027

belongs to
temperature unitc

degree Fahrenheitni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000195

belongs to
temperature unitc

eBioscienceni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001213

belongs to
organizationc

Edingburgh handedness inventoryni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001004

belongs to
questionnairec

Exalpha Biologicalni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001287

belongs to
organizationc

example to be eventually removedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000002

belongs to
curation status specificationc

Exbio Antibodiesni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001320

belongs to
organizationc

G1 (Fuhrman)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002211

belongs to
histologic grade according to the Fuhrman Nuclear Grading Systemc

G1 (WHO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002220

belongs to
histologic grade for ovarian tumor according to the World Health Organizationc

G1: Well differentiatedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002206

belongs to
histologic grade according to AJCC 7th editionc

G2 (Fuhrman)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002212

belongs to
histologic grade according to the Fuhrman Nuclear Grading Systemc

G2 (WHO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002221

belongs to
histologic grade for ovarian tumor according to the World Health Organizationc

G2: Moderately differentiatedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002207

belongs to
histologic grade according to AJCC 7th editionc

G3 (Fuhrman)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002213

belongs to
histologic grade according to the Fuhrman Nuclear Grading Systemc

G3 (WHO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002222

belongs to
histologic grade for ovarian tumor according to the World Health Organizationc

G3: Poorly differentiatedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002208

belongs to
histologic grade according to AJCC 7th editionc

G4 (Fuhrman)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002214

belongs to
histologic grade according to the Fuhrman Nuclear Grading Systemc

G4 (WHO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002223

belongs to
histologic grade for ovarian tumor according to the World Health Organizationc

G4: Undifferentiatedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002209

belongs to
histologic grade according to AJCC 7th editionc

gram per deciliterni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000208

belongs to
concentration unitc

gram per literni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000175

belongs to
concentration unitc

Helicosni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000757

belongs to
organizationc

High grade ovarian tumorni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002218

belongs to
histologic grade for ovarian tumor according to a two-tier grading systemc

hourni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000032

belongs to
time unitc

Illuminani back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000759

belongs to
organizationc

Invitrogenni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001434

belongs to
organizationc

Li-Corni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000769

belongs to
organizationc

Low grade ovarian tumorni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002217

belongs to
histologic grade for ovarian tumor according to a two-tier grading systemc

Luminexni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001443

belongs to
organizationc

mass percentageni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000163

belongs to
concentration unitc

mass volume percentageni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000164

belongs to
concentration unitc

microgram per literni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000301

belongs to
concentration unitc

micromolarni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000064

belongs to
concentration unitc

milligram per milliliterni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000176

belongs to
concentration unitc

milliliter per literni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000207

belongs to
concentration unitc

millimolarni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000063

belongs to
concentration unitc

Milliporeni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001340

belongs to
organizationc

Miltenyi Biotecni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001424

belongs to
organizationc

minuteni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000031

belongs to
time unitc

molarni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000062

belongs to
concentration unitc

monthni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000035

belongs to
time unitc

named class expressionni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000421

belongs to
denotator typec

nanomolarni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000065

belongs to
concentration unitc

NanoString Technologiesni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001860

belongs to
organizationc

Nimblegenni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001855

belongs to
organizationc

obi.owlni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/obi.owl

Date:
31/07/2009
Current version:
2020-08-24
Authors:
Alan Ruttenberg
Allyson Lister
Barry Smith
Bill Bug
Bjoern Peters
Carlo Torniai
Chris Mungall
Chris Stoeckert
Chris Taylor
Christian Bolling
Cristian Cocos
Daniel Rubin
Daniel Schober
Dawn Field
Dirk Derom
Elisabetta Manduchi
Eric Deutsch
Frank Gibson
Gilberto Fragoso
Helen C. Causton
Helen Parkinson
Holger Stenzhorn
James A. Overton
James Malone
Jay Greenbaum
Jeffrey Grethe
Jennifer Fostel
Jessica Turner
Jie Zheng
Joe White
John Westbrook
Kevin Clancy
Larisa Soldatova
Lawrence Hunter
Liju Fan
Luisa Montecchi
Matthew Brush
Matthew Pocock
Melanie Courtot
Melissa Haendel
Mervi Heiskanen
Monnie McGee
Norman Morrison
Philip Lord
Philippe Rocca-Serra
Pierre Grenon
Richard Bruskiewich
Richard Scheuermann
Robert Stevens
Ryan R. Brinkman
Stefan Wiemann
Susanna-Assunta Sansone
Tanya Gray
Tina Hernandez-Boussard
Trish Whetzel
Yongqun He
Contributors:
Advisors for this project come from the IFOMIS group, Saarbruecken and from the Co-ODE group in Manchester
Please cite the OBI consortium http://purl.obolibrary.org/obo/obi where traditional citation is called for. However it is adequate that individual terms be attributed simply by use of the identifying PURL for the term, in projects that refer to them.
The Ontology for Biomedical Investigations (OBI) is build in a collaborative, international effort and will serve as a resource for annotating biomedical investigations, including the study design, protocols and instrumentation used, the data generated and the types of analysis performed on the data. This ontology arose from the Functional Genomics Investigation Ontology (FuGO) and will contain both terms that are common to all biomedical investigations, including functional genomics investigations and those that are more domain specific.

Occult Carcinoma (AJCC 7th)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002315

belongs to
clinical tumor stage group according to AJCC 7th editionc

Oxford Nanopore Technologiesni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002755

belongs to
organizationc

Pacific Biosciencesni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001856

belongs to
organizationc

Partecni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001355

belongs to
organizationc

pHni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000196

belongs to
concentration unitc

picomolarni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000066

belongs to
concentration unitc

pM1 (colon)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002295

belongs to
pathologic distant metastases stage for colon according to AJCC 7th editionc

pM1 (kidney)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002309

belongs to
pathologic distant metastases stage for kidney according to AJCC 7th editionc

pM1 (lung)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002303

belongs to
pathologic distant metastases stage for lung according to AJCC 7th editionc

pM1 (ovary)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002313

belongs to
pathologic distant metastases stage for ovary according to AJCC 7th editionc

pM1a (colon)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002296

belongs to
pathologic distant metastases stage for colon according to AJCC 7th editionc

pM1a (lung)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002304

belongs to
pathologic distant metastases stage for lung according to AJCC 7th editionc

pM1b (colon)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002297

belongs to
pathologic distant metastases stage for colon according to AJCC 7th editionc

pM1b (lung)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002305

belongs to
pathologic distant metastases stage for lung according to AJCC 7th editionc

pN0 (colon)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002271

belongs to
pathologic lymph node stage for colon and rectum according to AJCC 7th editionc

pN0 (kidney)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002285

belongs to
pathologic lymph node stage for kidney according to AJCC 7th editionc

pN0 (lung)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002280

belongs to
pathologic lymph node stage for lung according to AJCC 7th editionc

pN0 (ovary)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002288

belongs to
pathologic lymph node stage for ovary according to AJCC 7th editionc

pN1 (colon)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002272

belongs to
pathologic lymph node stage for colon and rectum according to AJCC 7th editionc

pN1 (kidney)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002286

belongs to
pathologic lymph node stage for kidney according to AJCC 7th editionc

pN1 (lung)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002281

belongs to
pathologic lymph node stage for lung according to AJCC 7th editionc

pN1 (ovary)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002289

belongs to
pathologic lymph node stage for ovary according to AJCC 7th editionc

pN1a (colon)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002273

belongs to
pathologic lymph node stage for colon and rectum according to AJCC 7th editionc

pN1b (colon)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002274

belongs to
pathologic lymph node stage for colon and rectum according to AJCC 7th editionc

pN1c (colon)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002275

belongs to
pathologic lymph node stage for colon and rectum according to AJCC 7th editionc

pN2 (colon)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002276

belongs to
pathologic lymph node stage for colon and rectum according to AJCC 7th editionc

pN2 (lung)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002282

belongs to
pathologic lymph node stage for lung according to AJCC 7th editionc

pN2a (colon)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002277

belongs to
pathologic lymph node stage for colon and rectum according to AJCC 7th editionc

pN2b (colon)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002278

belongs to
pathologic lymph node stage for colon and rectum according to AJCC 7th editionc

pN3 (lung)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002283

belongs to
pathologic lymph node stage for lung according to AJCC 7th editionc

pT0 (colon)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002225

belongs to
pathologic primary tumor stage for colon and rectum according to AJCC 7th editionc

pT0 (kidney)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002244

belongs to
pathologic primary tumor stage for kidney according to AJCC 7th editionc

pT0 (lung)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002233

belongs to
pathologic primary tumor stage for lung according to AJCC 7th editionc

pT0 (ovary)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002257

belongs to
pathologic primary tumor stage for ovary according to AJCC 7th editionc

pT1 (colon)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002227

belongs to
pathologic primary tumor stage for colon and rectum according to AJCC 7th editionc

pT1 (kidney)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002245

belongs to
pathologic primary tumor stage for kidney according to AJCC 7th editionc

pT1 (lung)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002235

belongs to
pathologic primary tumor stage for lung according to AJCC 7th editionc

pT1 (ovary)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002258

belongs to
pathologic primary tumor stage for ovary according to AJCC 7th editionc

pT1a (kidney)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002246

belongs to
pathologic primary tumor stage for kidney according to AJCC 7th editionc

pT1a (lung)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002236

belongs to
pathologic primary tumor stage for lung according to AJCC 7th editionc

pT1a (ovary)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002259

belongs to
pathologic primary tumor stage for ovary according to AJCC 7th editionc

pT1b (kidney)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002247

belongs to
pathologic primary tumor stage for kidney according to AJCC 7th editionc

pT1b (lung)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002237

belongs to
pathologic primary tumor stage for lung according to AJCC 7th editionc

pT1b (ovary)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002260

belongs to
pathologic primary tumor stage for ovary according to AJCC 7th editionc

pT1c (ovary)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002261

belongs to
pathologic primary tumor stage for ovary according to AJCC 7th editionc

pT2 (colon)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002228

belongs to
pathologic primary tumor stage for colon and rectum according to AJCC 7th editionc

pT2 (kidney)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002248

belongs to
pathologic primary tumor stage for kidney according to AJCC 7th editionc

pT2 (lung)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002238

belongs to
pathologic primary tumor stage for lung according to AJCC 7th editionc

pT2 (ovary)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002262

belongs to
pathologic primary tumor stage for ovary according to AJCC 7th editionc

pT2a (kidney)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002249

belongs to
pathologic primary tumor stage for kidney according to AJCC 7th editionc

pT2a (lung)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002239

belongs to
pathologic primary tumor stage for lung according to AJCC 7th editionc

pT2a (ovary)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002263

belongs to
pathologic primary tumor stage for ovary according to AJCC 7th editionc

pT2b (kidney)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002250

belongs to
pathologic primary tumor stage for kidney according to AJCC 7th editionc

pT2b (lung)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002240

belongs to
pathologic primary tumor stage for lung according to AJCC 7th editionc

pT2b (ovary)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002264

belongs to
pathologic primary tumor stage for ovary according to AJCC 7th editionc

pT2c (ovary)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002265

belongs to
pathologic primary tumor stage for ovary according to AJCC 7th editionc

pT3 (colon)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002229

belongs to
pathologic primary tumor stage for colon and rectum according to AJCC 7th editionc

pT3 (kidney)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002251

belongs to
pathologic primary tumor stage for kidney according to AJCC 7th editionc

pT3 (lung)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002241

belongs to
pathologic primary tumor stage for lung according to AJCC 7th editionc

pT3 (ovary)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002266

belongs to
pathologic primary tumor stage for ovary according to AJCC 7th editionc

pT3a (kidney)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002252

belongs to
pathologic primary tumor stage for kidney according to AJCC 7th editionc

pT3a (ovary)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002267

belongs to
pathologic primary tumor stage for ovary according to AJCC 7th editionc

pT3b (kidney)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002253

belongs to
pathologic primary tumor stage for kidney according to AJCC 7th editionc

pT3b (ovary)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002268

belongs to
pathologic primary tumor stage for ovary according to AJCC 7th editionc

pT3c (kidney)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002254

belongs to
pathologic primary tumor stage for kidney according to AJCC 7th editionc

pT3c (ovary)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002269

belongs to
pathologic primary tumor stage for ovary according to AJCC 7th editionc

pT4 (kidney)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002255

belongs to
pathologic primary tumor stage for kidney according to AJCC 7th editionc

pT4 (lung)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002242

belongs to
pathologic primary tumor stage for lung according to AJCC 7th editionc

pT4a (colon)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002230

belongs to
pathologic primary tumor stage for colon and rectum according to AJCC 7th editionc

pT4b (colon)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002231

belongs to
pathologic primary tumor stage for colon and rectum according to AJCC 7th editionc

pTis (colon)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002226

belongs to
pathologic primary tumor stage for colon and rectum according to AJCC 7th editionc

pTis (lung)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002234

belongs to
pathologic primary tumor stage for lung according to AJCC 7th editionc

requires discussionni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000428

belongs to
curation status specificationc

Rocheni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000758

belongs to
organizationc

secondni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000010

belongs to
time unitc

Stage 0 (AJCC 7th)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002316

belongs to
clinical tumor stage group according to AJCC 7th editionc

Stage 1 (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002342

belongs to
International Federation of Gynecology and Obstetrics ovarian cancer stage value specificationc

Stage 1A (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002343

belongs to
International Federation of Gynecology and Obstetrics ovarian cancer stage value specificationc

Stage 1B (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002344

belongs to
International Federation of Gynecology and Obstetrics ovarian cancer stage value specificationc

Stage 1C (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002345

belongs to
International Federation of Gynecology and Obstetrics ovarian cancer stage value specificationc

Stage 2 (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002346

belongs to
International Federation of Gynecology and Obstetrics ovarian cancer stage value specificationc

Stage 2A (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002347

belongs to
International Federation of Gynecology and Obstetrics ovarian cancer stage value specificationc

Stage 2B (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002348

belongs to
International Federation of Gynecology and Obstetrics ovarian cancer stage value specificationc

Stage 2C (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002349

belongs to
International Federation of Gynecology and Obstetrics ovarian cancer stage value specificationc

Stage 3 (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002350

belongs to
International Federation of Gynecology and Obstetrics ovarian cancer stage value specificationc

Stage 3A (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002351

belongs to
International Federation of Gynecology and Obstetrics ovarian cancer stage value specificationc

Stage 3B (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002352

belongs to
International Federation of Gynecology and Obstetrics ovarian cancer stage value specificationc

Stage 3C (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002353

belongs to
International Federation of Gynecology and Obstetrics ovarian cancer stage value specificationc

Stage 4 (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002354

belongs to
International Federation of Gynecology and Obstetrics ovarian cancer stage value specificationc

Stage I (AJCC 7th)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002317

belongs to
clinical tumor stage group according to AJCC 7th editionc

Stage IA (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002327

belongs to
International Federation of Gynecology and Obstetrics cervical cancer stage value specificationc

Stage IA1 (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002328

belongs to
International Federation of Gynecology and Obstetrics cervical cancer stage value specificationc

Stage IA2 (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002329

belongs to
International Federation of Gynecology and Obstetrics cervical cancer stage value specificationc

Stage IB (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002330

belongs to
International Federation of Gynecology and Obstetrics cervical cancer stage value specificationc

Stage IB1 (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002331

belongs to
International Federation of Gynecology and Obstetrics cervical cancer stage value specificationc

Stage IB2 (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002332

belongs to
International Federation of Gynecology and Obstetrics cervical cancer stage value specificationc

Stage IIA (AJCC 7th)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002318

belongs to
clinical tumor stage group according to AJCC 7th editionc

Stage IIA (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002333

belongs to
International Federation of Gynecology and Obstetrics cervical cancer stage value specificationc

Stage IIA1 (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002334

belongs to
International Federation of Gynecology and Obstetrics cervical cancer stage value specificationc

Stage IIA2 (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002335

belongs to
International Federation of Gynecology and Obstetrics cervical cancer stage value specificationc

Stage IIB (AJCC 7th)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002319

belongs to
clinical tumor stage group according to AJCC 7th editionc

Stage IIB (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002336

belongs to
International Federation of Gynecology and Obstetrics cervical cancer stage value specificationc

Stage IIC (AJCC 7th)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002320

belongs to
clinical tumor stage group according to AJCC 7th editionc

Stage IIIA (AJCC 7th)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002321

belongs to
clinical tumor stage group according to AJCC 7th editionc

Stage IIIA (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002337

belongs to
International Federation of Gynecology and Obstetrics cervical cancer stage value specificationc

Stage IIIB (AJCC 7th)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002322

belongs to
clinical tumor stage group according to AJCC 7th editionc

Stage IIIB (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002338

belongs to
International Federation of Gynecology and Obstetrics cervical cancer stage value specificationc

Stage IIIC (AJCC 7th)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002323

belongs to
clinical tumor stage group according to AJCC 7th editionc

Stage IVA (AJCC 7th)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002324

belongs to
clinical tumor stage group according to AJCC 7th editionc

Stage IVA (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002339

belongs to
International Federation of Gynecology and Obstetrics cervical cancer stage value specificationc

Stage IVB (AJCC 7th)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002325

belongs to
clinical tumor stage group according to AJCC 7th editionc

Stage IVB (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002340

belongs to
International Federation of Gynecology and Obstetrics cervical cancer stage value specificationc

Stage Unknown (FIGO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002355

belongs to
International Federation of Gynecology and Obstetrics ovarian cancer stage value specificationc

Sysmex Corporation, Kobe, Japanni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000829

belongs to
organizationc

term importedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000228

belongs to
obsolescence reason specificationc

term splitni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000229

belongs to
obsolescence reason specificationc

terms mergedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000227

belongs to
obsolescence reason specificationc

Thermoni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000752

belongs to
organizationc

Thermo Fisher Scientificni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002193

belongs to
organizationc

to be replaced with external ontology termni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000423

belongs to
curation status specificationc

U.S. Food and Drug Administrationni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000901

belongs to
organizationc

universalni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000410

belongs to
denotator typec

volume percentageni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000165

belongs to
concentration unitc

Watersni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000753

belongs to
organizationc

weekni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000034

belongs to
time unitc

yearni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000036

belongs to
time unitc

Annotation Properties

alternative termap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000118

is defined by
http://purl.obolibrary.org/obo/iao.owl
has sub-properties
IEDB alternative termap, ISA alternative termap, NIAID GSCID-BRC alternative termap

BFO CLIF specification labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000180

has super-properties
labelap

BFO OWL specification labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000179

has super-properties
labelap

commentap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#comment

Contributorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/contributor

is defined by
http://purl.org/dc/elements/1.1/
An entity responsible for making contributions to the content of the resource.
Examples of a Contributor include a person, an organisation, or a service. Typically, the name of a Contributor should be used to indicate the entity.

Creatorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/creator

is defined by
http://purl.org/dc/elements/1.1/
An entity primarily responsible for making the content of the resource.
Examples of a Creator include a person, an organisation, or a service. Typically, the name of a Creator should be used to indicate the entity.

curator noteap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000232

is defined by
http://purl.obolibrary.org/obo/iao.owl

Dateap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/date

is defined by
http://purl.org/dc/elements/1.1/
A date associated with an event in the life cycle of the resource.
Typically, Date will be associated with the creation or availability of the resource. Recommended best practice for encoding the date value is defined in a profile of ISO 8601 [W3CDTF] and follows the YYYY-MM-DD format.

default languageap back to ToC or Annotation Property ToC

IRI: http://protege.stanford.edu/plugins/owl/protege#defaultLanguage

definitionap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000115

is defined by
http://purl.obolibrary.org/obo/iao.owl

definitionap back to ToC or Annotation Property ToC

IRI: http://www.ebi.ac.uk/efo/definition

definition editorap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000117

is defined by
http://purl.obolibrary.org/obo/iao.owl

definition sourceap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000119

is defined by
http://purl.obolibrary.org/obo/iao.owl

Descriptionap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/description

is defined by
http://purl.org/dc/elements/1.1/
An account of the content of the resource.
Description may include but is not limited to: an abstract, table of contents, reference to a graphical representation of content or a free-text account of the content.

editor noteap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000116

is defined by
http://purl.obolibrary.org/obo/iao.owl

editor preferred labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000111

is defined by
http://purl.obolibrary.org/obo/iao.owl

elucidationap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000600

is defined by
http://purl.obolibrary.org/obo/iao.owl

example of usageap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000112

is defined by
http://purl.obolibrary.org/obo/iao.owl

expand expression toap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000424

Formatap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/format

is defined by
http://purl.org/dc/elements/1.1/
The physical or digital manifestation of the resource.
Typically, Format may include the media-type or dimensions of the resource. Format may be used to determine the software, hardware or other equipment needed to display or operate the resource. Examples of dimensions include size and duration. Recommended best practice is to select a value from a controlled vocabulary (for example, the list of Internet Media Types [MIME] defining computer media formats).

has associated axiom(fol)ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000602

is defined by
http://purl.obolibrary.org/obo/iao.owl

has associated axiom(nl)ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000601

is defined by
http://purl.obolibrary.org/obo/iao.owl

has axiom labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0010000

is defined by
http://purl.obolibrary.org/obo/iao.owl

has curation statusap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000114

has o b o namespaceap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasOBONamespace

has obsolescence reasonap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000231

homepageap back to ToC or Annotation Property ToC

IRI: http://xmlns.com/foaf/0.1/homepage

IEDB alternative termap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_9991118

has super-properties
alternative termap

imported fromap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000412

is defined by
http://purl.obolibrary.org/obo/iao.owl

is defined byap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#isDefinedBy

ISA alternative termap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001847

has super-properties
alternative termap

labelap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#label

has sub-properties
BFO CLIF specification labelap, BFO OWL specification labelap

licenseap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/license

licenseap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/license

Date:
11T13:47:29Z/05/2018

mboxap back to ToC or Annotation Property ToC

IRI: http://xmlns.com/foaf/0.1/mbox

memberap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/member

NIAID GSCID-BRC alternative termap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001886

has super-properties
alternative termap

OBO foundry unique labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000589

ontology term requesterap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000234

The 'term requester' can credit the person, organization or project who request the ontology term.

pageap back to ToC or Annotation Property ToC

IRI: http://xmlns.com/foaf/0.1/page

see alsoap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#seeAlso

shorthandap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#shorthand

Sourceap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/source

is defined by
http://purl.org/dc/elements/1.1/
A reference to a resource from which the present resource is derived.
The present resource may be derived from the Source resource in whole or in part. Recommended best practice is to reference the resource by means of a string or number conforming to a formal identification system.

Subject and Keywordsap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/subject

is defined by
http://purl.org/dc/elements/1.1/
The topic of the content of the resource.
Typically, a Subject will be expressed as keywords, key phrases or classification codes that describe a topic of the resource. Recommended best practice is to select a value from a controlled vocabulary or formal classification scheme.

temporal interpretationap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001900

term replaced byap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0100001

Add as annotation triples in the granting ontology

term tracker itemap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000233

The 'tracker item' can associate a tracker with a specific ontology term.

titleap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/title

titleap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/title

typeap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/1999/02/22-rdf-syntax-ns#type

Namespace Declarations back to ToC

default namespace
http://purl.obolibrary.org/obo/obib.owl#
10-1186
https://doi.org/10.1186/
2012-07-20
http://purl.obolibrary.org/obo/bfo/2012-07-20/
2021-02-02
http://purl.obolibrary.org/obo/obib/2021-02-02/
axiom
http://purl.obolibrary.org/obo/bfo/axiom/
cl
http://purl.obolibrary.org/obo/cl#
core
http://vivoweb.org/ontology/core#
dc
http://purl.org/dc/elements/1.1/
docs
http://purl.obolibrary.org/obo/ro/docs/
efo
http://www.ebi.ac.uk/efo/
foaf
http://xmlns.com/foaf/0.1/
iao
http://purl.obolibrary.org/obo/iao/
issues
https://github.com/information-artifact-ontology/IAO/issues/
obo
http://purl.obolibrary.org/obo/
obo-syntax-html
http://owlcollab.github.io/oboformat/doc/obo-syntax.html#
oboInOwl
http://www.geneontology.org/formats/oboInOwl#
owl
http://www.w3.org/2002/07/owl#
page
http://www.geneontology.org/page/
papers
http://www.referent-tracking.com/_RTU/papers/
protege
http://protege.stanford.edu/plugins/owl/protege#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
robot-obolibrary-org
http://robot.obolibrary.org/
s9uug5qmaws
https://groups.google.com/d/msg/bfo-owl-devel/s9Uug5QmAws/
terms
http://purl.org/dc/terms/
wiki
https://github.com/obophenotype/uberon/wiki/
xsd
http://www.w3.org/2001/XMLSchema#

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni.