RU_metadata_ontology

Annotation Properties

abbrev^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#abbrev

A common accepted abbreviation for the RU-name. A word formed from the initials of one or more words describing the name, that is pronounceable like a normal word.

acronym^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#acronym

A common accepted acronyn for the RU-name.

action item^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#action_item

A description of a task / action for the RU editor to solve an issue related to the RU.

alt def^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#alt_def

An alternative definition. Usually the non-aristotelian natural language definition initially provided by domain specialists.

alt spr cls^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#alt_spr_cls

An alternative superclass assertion. Used to capture multiple parenthood.

axiom^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#axiom

General axioms to be fulfilled by instances of the class can be captured in an informal way in natural language here.

change note^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#change_note

A note that indicates what was modified or changed concerning the RU. Might become RU specific, i.e. cls_change_note AND prpty_change_note

cls del^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#cls_del

Allows to state the reason why a RU has been deleted.

cls expl^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#cls_expl

A prototypical example subclass for the class.

cls id^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#cls_id

A unique Identifyer for the class, consisting of a groups prefix, underscore and unique number.

cls name^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#cls_name

Any name of the class. ??? Will change according to Synonym implementation...

cls prov^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#cls_prov

The class name provenance. It can be a source publication, a database or ontology entry, a group, person name or a URL (dbxref in obo) A database cross reference. ???

context keyword^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#context_keyword

The main usage contexts can be stated, e.g. for text mining purposes or translation purposes.

creation date^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#creation_date

The date when a RU was first created. (Will be provided automatically by Protege 4).

curation status^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#curation_status

The status (stability level) of the class. Specifies tracking information. E.g. unstable, experimental, stable.

def^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#def

The arestotelian, formalized and normalized class definition layed out according to IFOMIS-best practice, explanaining the meaning of a class.

def prov^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#def_prov

The definition provenance (was: Defsource). It can be a source publication, a database or ontology entry, a group or person name or a URL (dbxref in obo)

del date^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#del_date

The date a RU was deleted.

editor^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#editor

The name of a specific editior/curator who is responsible for and edits this RU.

editor note^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#editor_note

A note related to the RU intended for its editor.

formal cls name^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#formal_cls_name

A name for the class that is formaly controlled through linguistical rules and axioms. E.G. OBOL normalized ones that adhere to defined principles of word/morpheme/affix order and form. ???

inst expl^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#inst_expl

An example value or instance for the class or Database entry which will be annotated through this RU.

modif date^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#modif_date

The date on which the RU was last modified.

old cls state^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#old_cls_state

State wheather a class was defined or primitive when deleted.

old spr cls^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#old_spr_cls

For deleted classes state their last position within the ontology, state the old superclasses.

old sub cls^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#old_sub_cls

For deleted classes state their last position within the ontology, state the old subclasses.

ont imp^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#ont_imp

To mark from where on in the Class-hierarchy we want to import / refer to a complete subclass hierarchy from an other ontology (was: refer to) ??? Maybe better: cls_imp

pref cls name^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#pref_cls_name

The preferred name for a class, usually the one used to display in the Hierarchy-browser. As now captured in the rdf:label ???

pref propty name^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#pref_propty_name

The preferred name for a class, usually the one used to display in the Hierarchy-browser.

prpty del^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#prpty_del

State the reason why a property was deleted, analogously as for cla_del.

prpty expl^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#prpty_expl

A prototypic example od a sub-property of this property )when property hierarchies are allowed.

prpty id^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#prpty_id

A unique formal identifyer for the property, analogously to the cls_id.

prpty name^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#prpty_name

A name of the property, analogously as a cls_name.

prpty prov^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#prpty_prov

The property name provenance. It can be a source publication, a database or ontology entry, a group, person name or a URL (dbxref in obo) A database cross reference. ???

refact^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#refact

When a class has been refactored into more atomic classes, then the original compound class is made obsolete and this deleted source class which gave birth to the new atomic child classes is mentioned here for all new atomic classes.

replace^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#replace

When a new RU-name replaces an old one, state here which one was replaced. ???

rights^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#rights

Indicate access rights for a RU. The security policy should be compliant with the rule-based access control standards,INCITS, InterNational Committee for Information Technology Standards (formerly NCITS). (2003). Role Based Access Control. INCITS 359 DRAF, 4/4/2003. http://csrc.nist.gov/rbac/ Those offer, in at the same time, a consistent layered approach for security policy definition and management and for compliance with a growing set of supporting tools.

scope note^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#scope_note

Any general formless remark or note about the scope of the RU (was: rem, note).

short cls name^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#short_cls_name

A short class name suitable for graph visualisations etc.

short prpty name^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#short_prpty_name

A shortproperty name suitable for graph visualisations etc.

source^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#source

??? rel to ont_imp ??? rel to def_prov or cls_prov ? Do we need this separately for diff RUs? Eg. cls_src, prprty_src,…?

synonym^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#synonym

An alternative name for the RU used as synonym (can be used in the same manner as the name in different contexts).

temp def^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#temp_def

Indicates definitions which need to be refined.

u m l s connect^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#UMLS_connect

A link to a UMLS semantic Type CUI.

unresolved issue^ap back to ToC or Annotation Property ToC

IRI: http://purl.org/imbi/ru-meta.owl#unresolved_issue

An important problematic issue that has to be tackled by the editors.

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni.

RU_metadata_ontology

Abstract

Table of Content

Classes

deletedc back to ToC or Class ToC

inclusion listc back to ToC or Class ToC

temp orphanc back to ToC or Class ToC

Annotation Properties

abbrevap back to ToC or Annotation Property ToC

acronymap back to ToC or Annotation Property ToC

action itemap back to ToC or Annotation Property ToC

alt defap back to ToC or Annotation Property ToC

alt spr clsap back to ToC or Annotation Property ToC

axiomap back to ToC or Annotation Property ToC

change noteap back to ToC or Annotation Property ToC

cls delap back to ToC or Annotation Property ToC

cls explap back to ToC or Annotation Property ToC

cls idap back to ToC or Annotation Property ToC

cls nameap back to ToC or Annotation Property ToC

cls provap back to ToC or Annotation Property ToC

context keywordap back to ToC or Annotation Property ToC

creation dateap back to ToC or Annotation Property ToC

curation statusap back to ToC or Annotation Property ToC

defap back to ToC or Annotation Property ToC

def provap back to ToC or Annotation Property ToC

del dateap back to ToC or Annotation Property ToC

editorap back to ToC or Annotation Property ToC

editor noteap back to ToC or Annotation Property ToC

formal cls nameap back to ToC or Annotation Property ToC

inst explap back to ToC or Annotation Property ToC

modif dateap back to ToC or Annotation Property ToC

old cls stateap back to ToC or Annotation Property ToC

old spr clsap back to ToC or Annotation Property ToC

old sub clsap back to ToC or Annotation Property ToC

ont impap back to ToC or Annotation Property ToC

pref cls nameap back to ToC or Annotation Property ToC

pref propty nameap back to ToC or Annotation Property ToC

prpty delap back to ToC or Annotation Property ToC

prpty explap back to ToC or Annotation Property ToC

prpty idap back to ToC or Annotation Property ToC

prpty nameap back to ToC or Annotation Property ToC

prpty provap back to ToC or Annotation Property ToC

refactap back to ToC or Annotation Property ToC

replaceap back to ToC or Annotation Property ToC

rightsap back to ToC or Annotation Property ToC

scope noteap back to ToC or Annotation Property ToC

short cls nameap back to ToC or Annotation Property ToC

short prpty nameap back to ToC or Annotation Property ToC

sourceap back to ToC or Annotation Property ToC

synonymap back to ToC or Annotation Property ToC

temp defap back to ToC or Annotation Property ToC

u m l s connectap back to ToC or Annotation Property ToC

unresolved issueap back to ToC or Annotation Property ToC

Namespace Declarations back to ToC

deleted^c back to ToC or Class ToC

inclusion list^c back to ToC or Class ToC

temp orphan^c back to ToC or Class ToC