NMR-instrument specific component of metabolomics investigations

IRI:
http://msi-ontology.sourceforge.net/ontology/NMR.owl
Date:
18.10.2006
Current version:
v.0.1
Authors:
Daniel Schober, Susanna-Assunta Sansone Contact via MSI OWG mailing list (mailto:msi-workgroups-ontology@lists.sourceforge.net)
Contributors:
In alphabetical order: Andy Tseng (Human Serum Metabolome Project, Un of Manchester, UK), Bertram Ludaescher (UCDavis Genome Center, US), Chris Taylor (EBI and HUPO-PSI), Daniel Schober (EBI and HUPO-PSI), Dennis Rubtsov (Un of Cambridge, UK), Helen Jenkins (Un of Wales, Aberystwyth, UK), Irena Spasic (Center for Integrative Systems Biology, Manchester, UK), Larissa Soldatova (University of Wales, Aberystwyth, UK), Lori Querengasser (Un of Alberta, CA), Martin Scholz (UCDavis Genome Center, US), Matej Oresic (VTT Technical Research Centre of Finland, FI), Oliver Fiehn (UCDavis Genome Center, US), Philippe Rocca-Serra (EBI and MGED), Susanna-Assunta Sansone (EBI, HUPO-PSI and MGED))
Publisher:
msi-owg, http://msi-ontology.sourceforge.net/
Imported Ontologies:
https://svn.sourceforge.net/svnroot/fugo/trunk/ontology/OBI.owl (visualise it with LODE)
https://svn.sourceforge.net/svnroot/msi-workgroups/ontology/RU_metadata.owl (visualise it with LODE)
Other visualisation:
Ontology source

Abstract

Keywords: NMR, nuclear magnetic resonance, metabolomics, metabolomics investigation, metabolomics experiment Important top level classes: NMR_instrument, NMR_instrument_configuration, NMR_parameter_set, NMR_vendor, NMR_software, data_processing_method, NMR_spectrum, NMR-data-set, NMR_probe Intended application: data annotation, reporting requirements usage: in development

Table of Content

  1. Introduction
  2. Classes
  3. Annotation Properties
  4. Namespace Declarations

Introduction

This is the initial draft of the msi-nmr-ontology binned under 'webimported' OBI and BFO classes. This is a primary discussion- and test-version to encourage nmr term development. As a secondary role this ontology serves as a testbed to evaluate the BFO top level ontology , modularization and the owl-import and referencing mechanism. The nmr ontology is developed by the ontology working group (http://msi-ontology.sourceforge.net/) of the msi-metabolomicssociety (msi-workgroups.sf.net).

Classes

11Bc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400153

has super-classes
acquisition_nucleusc

13Cc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400154

has super-classes
acquisition_nucleusc

15Nc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400271

has super-classes
acquisition_nucleusc

17Oc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400155

has super-classes
acquisition_nucleusc

19Fc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400156

has super-classes
acquisition_nucleusc

1Hc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400151

def: The nucleus of the element Hydrogen, a proton. rem1: The nucleus most often studied in NMR metabolomics.
has super-classes
acquisition_nucleusc

1mm_MicroProbec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400194

def: Over the past few years there has been a significantly growing demand for miniaturization in all areas ofmodern research and development. Evoked by many exciting applications, there is a need for analytical methods which require less amounts of sample. Bruker BioSpin meets this challenge with a revolutionary NMR probe design: The 1mm MicroProbe. It operates with disposable 1mm capillary sample tubes and the sample volume of 5 microliters enables the use of lowest amounts of sample to run all high resolution NMR experiments with outstanding sensitivity and up to 16 times faster measurements. Due to the TXI-type probe design, the z-gradient coil and the automatic matching and tuning accessory, the 1mm MicroProbe can be used for a wide variety of NMR experiments. The key advantages of this probe include: up to 4 times higher mass sensitivity than 5mm conventional probes (with respect to the same sample amount) excellent solvent suppression properties virtually no salt effect discrete samples in tubes that can be sealed and stored automation accessory for sample preparation and handling available defprov: Bruker website
has super-classes
Bruker_NMR_probec

29Sic back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400157

has super-classes
acquisition_nucleusc

2Hc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400152

Current version:
TODO: Do we need definitions here?
has super-classes
acquisition_nucleusc

31Pc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400158

has super-classes
acquisition_nucleusc

?resultc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400125

defneed clsdel: was under study_report
has super-classes
realizable entityc
has sub-classes
quality_check_resultc

ACc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400241

has super-classes
Bruker_NMR_instrumentc

Acorn_NMR_Incc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400270

has super-classes
NMR_vendorc

acquisition_computerc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400013

def: A Computer used for NMR, can be divided into central processing unit (CPU), consisting of instruction, interpretation and arithmetic unit plus fast access memory, and peripheral devices such as bulk data storage and input and output devices (including, via the interface, the spectrometer). Under software control, the computer controls the RF pulses and gradients necessary to acquire data, and process the data to produce spectra or images. Note that devices such as the spectrometer may themselves incorporate small computers.
has super-classes
cardinal_part_of_NMR_instrumentc

acquisition_nucleusc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400083

def: The nucleus of an element or isotope that is being studied during an NMR analysis. Common NMR requirements include direct 1D and 2D proton-only NMR, direct observation of 13C NMR with 1H decoupling, direct observation of other nuclei such as 19F, 31P, 29Si, 31P, 27Al, and 15N (with or without 1H decoupling), triple resonance NMR (especially inverse triple resonance such as 1H observe, 13C and 15N decouple), and inverse 2D and 3D experiments such as HMQC and HMBC.
has super-classes
rolec
has sub-classes
11Bc, 13Cc, 15Nc, 17Oc, 19Fc, 1Hc, 29Sic, 2Hc, 31Pc

acquisition_parameter_set_file_referencec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400118

def: A reference to the file of acquisition parameters produced by a machine.
has super-classes
file_referencec

additional_axis_unitc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400093

def: The unit of measurement of the second dimension of a 2D NMR dataset.
has super-classes
o b i 20c

algorithmc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400003

def: An algorithm is a procedure (a finite set of well-defined instructions) for accomplishing some task which, given an initial state, will terminate in a defined end-state. defprov:wiki
has super-classes
methodc
has sub-classes
post-processing_algorithmc

AMIX_VIEWER_&_AMIX-TOOLSc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400221

has super-classes
Bruker_NMR_softwarec

AMXc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400240

has super-classes
Bruker_NMR_instrumentc

analysisc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400005

def: An investigation of the component parts of a whole and their relations in making up the whole. defprov: Google define altdef: A systematic approach to problem solving. Complex problems are made simpler by separating them into more understandable elements. This involves the identification of purposes and facts, the statement of defensible assumptions, and the formulation of conclusions.
has super-classes
methodc
has sub-classes
NMR_analysisc

APOLLOc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400249

defneed
has super-classes
tecmag_consolec

atom_environment_encodingc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400089

def: A scheme for producing a numerical representation of the environment of an atom.
has super-classes
o b i 20c

AURELIAc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400219

has super-classes
Bruker_NMR_softwarec

AUREMOLc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400220

has super-classes
Bruker_NMR_softwarec

autosamplerc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400002

def: An optional part of an NMR instrument used to hold samples prior to NMR analysis and that sequentially loads these samples into the analytical part of the NMR instrument. altdef: The autosampler is an automatic sample changer.
has super-classes
o b i 47c
has sub-classes
Bruker_autosamplerc

AVANCE_II_spectrometerc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400197

Current version:
TODO: May need no definition
defneed
has super-classes
Bruker_NMR_instrumentc

B-ACSc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400210

def: The Bruker Automatic Sample Changer (B-ACS 60/120), used in conjunction with Bruker DISNMR, UXNMR or XWIN-NMR software, provides dialog-guided facilities which allow the user to easily and effectively perform automatic (continuous) experiments. Features include a 60 or 120 sample capacity, random accessing of samples, positive sample identification with the optional bar code reader, and temperature control of individual samples with the optional sample heater unit. defprov: Bruker website
has super-classes
Bruker_autosamplerc

baseline_correctionc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400074

def: A method of flattening the baseline of a spectrum.
has super-classes
data_transformationc

Brukerc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400256

Current version:
TODO: May not need definition due to its instance character.
defneed
has super-classes
NMR_vendorc

Bruker_AutoCleanc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400205

def: In today's fast-paced research environment, NMR tubes are often used once and discarded, creating needless waste. With the Bruker BioSpin Autoclean™ system you can now recycle 5mm, 3mm, or 5mm/3mm step-down (Wilmad 520-1B) NMR tubes. AutoClean NMR Tube Washing System is a simple way to recoup the substantial investment your organization makes in quality NMR tubes, and cut back on needless waste material. defprov: Bruker website
has super-classes
NMR_tube_washing_systemc

Bruker_autosamplerc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400209

defneed
has super-classes
autosamplerc
has sub-classes
B-ACSc, Bruker_BEST_NMRc, NMR_Casec, SampleJetc

Bruker_BEST_NMRc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400206

def: The introduction of biological screening and combinatorial chemistry for chemical synthesis has also introduced new requirements for NMR automation, e.g., the use of well plates for sample input, increased demands on throughput, and the need for quick and simple interpretation of the acquired NMR data. defprov: Bruker website synonym: Bruker Efficient Sample Transfer NMR
has super-classes
Bruker_autosamplerc

Bruker_MATCHc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400211

def: The Bruker Multiple Adjustable Tube Clamp Holder MATCH™ system is a holder for 100 mm long NMR sample tubes with diameters ranging from micro tubes up to 5 mm NMR tubes. The MATCH insert fits into a standard 10 mm Bruker spinner and is suitable for all non-spinning applications. The MATCH system provides an easy and cost efficient means of optimizing the signal-to-noise ratio of each sample. By matching the NMR tube diameter to the size of the sample, most of the sample can be placed in the active column of the NMR coil. This leads to an enhanced signal detection compared to diluting the same sample quantity in a larger tube. defprov: Bruker website synonym: Bruker Multiple Adjustable Tube Clamp Holder
has super-classes
NMR_sample_holderc

Bruker_NMR_instrumentc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400198

defneed
has super-classes
NMR_instrumentc
has sub-classes
ACc, AMXc, AVANCE_II_spectrometerc, Capillary_LC-NMRc, Hyphenationc, Metabolic_Profilerc

Bruker_NMR_magnetc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400186

defneed
has super-classes
NMR_magnetc
has sub-classes
US_2c, UltraShieldc, UltraShield_Plusc, Ultrastabilizedc

Bruker_NMR_probec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400231

Current version:
TODO: May need no definition.
defneed
has super-classes
NMR_probec
has sub-classes
1mm_MicroProbec, CryoProbec, HR_Probes_with_ATMc, High_resolution_probec, Micro_Imaging_probec, flow_high_resolution_probec, high_resolution_magic_angle_spin_probec, solid_magic_angle_spinning_probec

Bruker_NMR_softwarec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400214

Current version:
TODO: May need no definition.
defneed
has super-classes
NMR_softwarec
has sub-classes
AMIX_VIEWER_&_AMIX-TOOLSc, AURELIAc, AUREMOLc, NMR_Suitec, Paravisionc, SampleTrackc, TopSpin_1.3c

bucketed_spectrumc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400009

Current version:
TODO: has spectral post processing parameter
def: A post-processed NMR spectrum in which the y-values of the datapoints have been summed based on periodic ranges of the x-axis values.
has super-classes
NMR_spectrumc

bucketingc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400138

def: A post-processing method that divides a pre-processed NMR spectrum into a series of buckets (or bins) along the x-axis, and then integrates the spectral intensity within each bucket. altdef: A type of automated integration which occurs across pre-defined regions for a spectrum.
has super-classes
spectrum_post-processingc

bufferc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400031

def: A compound added to a sample to alter its pH value.
has super-classes
rolec

calibration_compoundc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400032

def: The compound that produced the peak used to reference a spectrum during data pre-processing.
has super-classes
rolec

calibration_reference_shiftc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400021

def: The parts-per-million value of the peak used to reference a spectrum.
has super-classes
o b i 3c

Capillary_LC-NMRc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400201

has super-classes
Bruker_NMR_instrumentc

CapNMR_Probec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400233

has super-classes
JEOL_NMR_probec

cardinal_part_of_NMR_data_setc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400007

tempdef: An immanent important, non-obligatory part of any NMR data set. defprov: Daniel Schober synonym: cardinal part of NMR data set
has super-classes
complex_datatypec
has sub-classes
NMR_spectrumc, one_dimensional_free_induction_decayc, two_dimensional_free_induction_decayc

cardinal_part_of_NMR_instrumentc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400011

def: A part of an NMR instrument which is cardinally important and hence obligatory and compulsatory for the proper intended function of the instrument. synonym: cardinal part of NMR instrument
has super-classes
o b i 47c
has sub-classes
NMR_magnetc, NMR_probec, NMR_sample_holderc, acquisition_computerc, consolec, tubec

CATc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400251

has super-classes
tecmag_NMR_instrumentc

chemical_compoundc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400030

Current version:
TODO: May be imported from other Ontology.
tempdef: A chemical compound is a small object which reacts chemically and is usually a molecule or composed out of molecules. defprov: Daniel Schober
has super-classes
objectc

chemical_shift_standardc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400033

def: A compound that is added to an NMR sample to enable the alignment of spectra. The power of NMR is that for most nuclei the NMR frequency changes very slightly with different molecular environment or chemical bonding. These shifts are very small, on the order of 1 part in 10+9. This is referred to as "Chemical Shift." Tables of chemical shifts are tabulated and used to determine molecular structure. Combining NMR chemical shift information with other NMR information such as peak integration, coupling constants and Nuclear Overhauser Enhancement (NOE) can result in complete three-dimensional molecular structures of molecules in solution without using X-ray crystallography.
has super-classes
rolec

coherence_pathway_rejectionc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400146

tempdef: A water suppression method which is used to suppress the natural water signal in a gradient selection experiment (e.g. echo/antiecho), where the water coherence is not "refocused" by the refocus gradient (therefore, is not selected). defprov: Daniel Schober
has super-classes
water_suppression_methodc

complex_datatypec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400036

def: A complex datatype (or complex value) is a datatype that is not a primitive one (like string or integer) and that references to more primitive values. Often, these are called reference data types. Complex datatypes can belong to the object data type. Data types that define sets of complex values include Array, Date, Error, Function, and XML and others.
has super-classes
o b i 43c
has sub-classes
NMR_data_setc, cardinal_part_of_NMR_data_setc

concentrationc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400018

def: The ratio of the mass or volume of a solute to the mass or volume of the solution or solvent.
has super-classes
o b i 3c

consolec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400015

Current version:
TODO: same as or part of acquisition computer?
def: A component of an NMR instrument that controls the activities of the other components.
has super-classes
cardinal_part_of_NMR_instrumentc
has sub-classes
tecmag_consolec

convolutionc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400110

defneed
has super-classes
post-acquisition_water_suppression_methodc

CryoProbec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400191

def: The Bruker BioSpin CryoProbe is a high-performance cryogenically cooled probe developed for high-resolution applications. It has improved signal/noise (S/N) ratios obtained by reducing the operating temperature of the coil and the pre-amplifier. As a result, the efficiency of the coil is improved and the noise of the coil and the pre-amplifier are reduced.The dramatic increase in the S/N ratio by a factor of 3-4, as compared to conventional probes, leads to a possible reduction in experiment time of up to 16 or a reduction in required sample concentration by a factor of up to 4. The CryoProbes possess key characteristics for NMR analysis: Significant S/N gains (with moderately salty samples also) Short pulse widths Short ring down times Linear behavior in power response Gradient capability CryoProbes are available as Triple Resonance, Dual, Selective X Detection, MicroImaging, and Quad Nucleus Probes configurations at 400 MHz and higher All high resolution probes have a lock circuit All high resolution probes have Z-gradient defprov: Bruker website
has super-classes
Bruker_NMR_probec

data_post-processingc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400038

def: Automatic or manual procedures performed upon pre-processed NMR data sets that aim to summarise them or annotate them with speculative values.
has super-classes
data_processing_methodc
has sub-classes
NMR_spectral_post-processingc

data_pre-processingc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400040

defneed
has super-classes
data_processing_methodc
has sub-classes
NMR_data_pre-processingc

data_pre-processing_softwarec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400134

def: A software artifact used during data pre-processing.
has super-classes
o b i 10c

data_processing_methodc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400042

def: A method or algorithm that converts an input data set into an output data set in a tracable and useful manner.
has super-classes
methodc
has sub-classes
data_post-processingc, data_pre-processingc, data_transformationc, encoding_methodc

data_transformationc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400043

def: A method for transforming the time-based acquisition data into frequency-based data.
has super-classes
data_processing_methodc
has sub-classes
baseline_correctionc, first_order_phase_correctionc, fourier_transformationc, non-fourier_transformationc, normalisation_strategyc, spectral_denoisingc, spectrum_post-processingc, symmetrisec, zero_order_phase_correctionc

decoupled_nucleusc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400029

def: An indication of whether the nucleus being studied is the acquitsition nucleus.
has super-classes
o b i 3c

Deltac back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400230

has super-classes
JEOL_NMR_softwarec

DISCOVERYc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400247

def: The Discovery™ is a Windows XP Professional-based, integrated console designed especially for Solid-State NMR. The console includes everything needed to interface to any magnet and solids probe - from computer to cables to duplexing network defprov: tecmag website
has super-classes
tecmag_consolec

Doty_Scientificc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400264

has super-classes
NMR_vendorc

dwell_timec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400023

def: A digital sampling interval. alsprcls: time_interval
has super-classes
o b i 3c

ECAc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400228

has super-classes
JEOL_NMR_instrumentc

echo_anti-echoc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400057

defneed
has super-classes
encoding_methodc

ECXc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400227

has super-classes
JEOL_NMR_instrumentc

encoding_methodc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400048

tempdef: A data processing method which compresses a data file for a specific purpose. defprov: Daniel Schober
has super-classes
data_processing_methodc
has sub-classes
Frydman_encodingc, Hadamard_encodingc, echo_anti-echoc, projection_methodc, quantum_momentum_field_gradientc, radon_encodingc, statesc, states-time_proportional_phase incrementationc, time_proportional_phase incrementationc

excitation_sculptingc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400144

def: A specific technique used to suppress the solvent signal in a spectrum. altdef:: A type of pulse sequence (or part of it) used to suppress a frequency (most commonly solvent).
has super-classes
water_suppression_methodc

exponential_multiplicationc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400069

def: The exponential function used to multiply a FID by to produce a desitred amount of line broadening.
has super-classes
window_function_methodc

field_strengthc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400027

def: The intensity of an electric, magnetic, or other field.
has super-classes
o b i 3c
has sub-classes
magnetic_field_strengthc

file_referencec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400267

defneed
has super-classes
referencec
has sub-classes
acquisition_parameter_set_file_referencec, free_induction_decay_file_referencec, processing_parameter_set_file_referencec, pulse_sequence_file_referencec, shaped_pulse_file_referencec

first_order_phase_correctionc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400080

defneed
has super-classes
data_transformationc

flip-back_watergatec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400147

defneed
has super-classes
watergatec

flow_high_resolution_probec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400195

def: Hyphenated analytical techniques combining mass spectrometry and chromatography are well-established laboratory tools. The combination of chromatography and NMR has also made its way into the analytical laboratory. Further developments even combine all three techniques into an LC-NMR/NMR-MS system. The use of solid phase extraction provides an efficient interface between chromatography and NMR with demands for special type of flow probes. defprov: Bruker website synonym: flow_HR-probe
has super-classes
Bruker_NMR_probec

flow_probec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400131

defneed
has super-classes
sample_introduction_parameterc

fourier_transformationc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400044

tempdef: An integral data transformation that re-expresses a function in terms of sinusoidal basis functions, i.e. as a sum or integral of sinusoidal functions multiplied by some coefficients ("amplitudes"). defprov: Daniel Schober
has super-classes
data_transformationc

free_induction_decay_file_referencec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400119

def: A reference to a file containing the raw FID. synonym: FID_file_reference
has super-classes
file_referencec

Frydman_encodingc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400056

defneed
has super-classes
encoding_methodc

G_matrix_fourier_transform_projectionc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400049

tempdef:GFT NMR allows for rapid multidimensional FT NMR spectral information gathering, avoiding sampling limitations without compromising on the precision of chemicalshift. defprov: ttp://www.nsm.buffalo.edu/Research/GFT/szyperski_publications_1st_page/Szyperski%2067.pdf synonym: GFT-projection
has super-classes
projection_methodc

gaussian_broadeningc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400070

defneed
has super-classes
window_function_methodc

GEMINIc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400239

has super-classes
Varian_NMR_instrumentc

Hadamard_encodingc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400054

defneed
has super-classes
encoding_methodc

hadamard_frequencyc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400019

def: A frequency used during Hadamard encoding.
has super-classes
o b i 3c

hankel_singular_value_decompositionc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400109

def: This Method removes the residual water and its side lobes, thereby reducing the baseline for the metabolites of interest and allowing subsequent data analysis using more sophisticated nonlinear least squares algorithms. synonym: HSVD
has super-classes
post-acquisition_water_suppression_methodc

high_resolution_magic_angle_spin_probec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400192

def: Samples that are neither solid nor liquid, being of biological, chemical, and/or pharmaceutical interest, reveal highly resolved spectra when magic angle spinning is applied. The correct solution is a gradient, such that the field varies along the spinner axis. This so-called Magic Angle Gradient is employed in Bruker’s high resolution Magic Angle Spinning (hr-MAS) probes, and is implemented in such a way that it is compatible with the stator and does not interfere with the sample eject/insert. Bruker BioSpin has developed a series of dedicated probes for standard bore magnets to accommodate the rapidly expanding field of hr-MAS. These probes are available in double (e.g. 1H and 13C) and triple resonance (e.g., 1H, 13C, 15N) modes and come equipped with a deuterium lock channel. The probes have automatic sample ejection and insertion capability, with the availability of an optional sample changer, enabling fully automated sample runs. Probes can be equipped with an optional B0 gradient, directed along the magic angle, so that gradient spectroscopy can be done used. defprov: Bruker website altdef: High resolution MAS (hr-MAS) provides an easy means of obtaining high resolution spectra for a variety of samples that would otherwise result in poorly resolved spectra. The addition of an hr-MAS probe and a MAS pneumatic unit to a standard high resolution spectrometer is all that is needed to open the gate to the world of hr-MAS spectroscopy and gain access to a vast amount of highly interesting samples. synonyms: High resolution MAS, hr-MAS
has super-classes
Bruker_NMR_probec

High_resolution_probec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400223

def:BRUKER BIOSPIN's experienced Research & Development group not only delivers top-performance probes for the more common experiments, but also a wealth of special probes for almost any application. For high resolution (HR) NMR we offer probes with a variety of important characteristics and features. defprov: Bruker website synonym: HR Probe
has super-classes
Bruker_NMR_probec

HR_Probes_with_ATMc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400224

def: The ATM option for AVANCE spectrometers is available for: Double resonance probes in fixed-frequency and broadband tunable configurations with either direct or indirect detection. Thus, for multinuclear operation, as often required for applications in inorganic chemistry, ATM facilitates the accurate setting of 90° pulsewidths on both observe and decoupling channels for each chosen nucleus and each individual sample - even with full automation. Triple resonance probes in fixed-frequency configurations, as typically used for inverse detection with high-field systems. defprov: Bruker website synonym: High Resolution Probes with Automatic Tuning and Matching
has super-classes
Bruker_NMR_probec

Hyphenationc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400200

has super-classes
Bruker_NMR_instrumentc

INOVAc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400236

has super-classes
Varian_NMR_instrumentc

instrument_configurationc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400062

An instrument configuration is the process of setting the possible parameters of an instrument in order to archive a certain intended goal.
has super-classes
o b i 3c
has sub-classes
NMR_instrument_configurationc

irradiation_frequencyc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400026

def: The frequency of the RF radiation used to irradiate an NMR sample.
has super-classes
o b i 3c

JEOLc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400258

has super-classes
NMR_vendorc

JEOL_NMR_instrumentc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400226

has super-classes
NMR_instrumentc
has sub-classes
ECAc, ECXc

JEOL_NMR_probec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400232

defneed
has super-classes
NMR_probec
has sub-classes
CapNMR_Probec

JEOL_NMR_softwarec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400229

has super-classes
NMR_softwarec
has sub-classes
Deltac

JS_Researchc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400266

has super-classes
NMR_vendorc

jump_and_returnc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400148

tempdef: A jump and return pulse sequence method is a water suppression method that uses a defined pulse sequences to make fast exchanging protons visible. synonym: jump and return pulse sequence
has super-classes
water_suppression_methodc
has sub-classes
jump_and_return_1-1c, jump_and_return_1-3-3-1c

jump_and_return_1-1c back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400149

tempdef: A jump and return 1-1 pulse sequence method is a jump and return method that uses one 90 degree pulse and one 90 degree return puls to make fast exchanging protons visible, first described by Plateau,P. and Gueron,M. (1982) J. Am. Chem. Soc., 104, 7310–7311. Compared to the 1-3-3-1 method it has a lower receiver gain and the dispersive tail of water interferes with the signals of interest.
has super-classes
jump_and_returnc

jump_and_return_1-3-3-1c back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400150

tempdef:A jump and return 1-3-3-1 pulse sequence method is a jump and return method that uses a 1-3-3-1 pulse sequence to make fast exchanging protons visible. Compared to the 1-1 method it has better water suppression (higher receiver gain) capabilities, but with offset-dependent phase distortion (unsuitable for 2D).
has super-classes
jump_and_returnc

line_broadeningc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400097

defneed
has super-classes
window_function_parameterc

line_sharpeningc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400098

defneed
has super-classes
window_function_parameterc

liquid_NMR_probec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400242

has super-classes
NMR_probec

literature_referencec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400268

defneed
has super-classes
referencec

magic_angle_spinning_rotorc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400130

defneed synonym: MAS_rotor
has super-classes
sample_introduction_parameterc

magnetic_field_strengthc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400253

defneed
has super-classes
field_strengthc

maximum_intensity_projectionc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400076

defneed
has super-classes
projection_methodc

MERCURYc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400235

has super-classes
Varian_NMR_instrumentc

Metabolic_Profilerc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400199

has super-classes
Bruker_NMR_instrumentc

methodc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400063

Current version:
altspcls: process ???
defneed
has super-classes
realizable entityc
has sub-classes
algorithmc, analysisc, data_processing_methodc, quality_control_methodc, sample_introduction_methodc, water_suppression_methodc, window_function_methodc

Micro_Imaging_probec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400225

defneed
has super-classes
Bruker_NMR_probec

MR_Resourcesc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400259

has super-classes
NMR_vendorc

ninety_degree_pulse_durationc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400022

def: The duration of the excitation pulse needed to rotate the magnetisation vector by 90 degrees. synonym: 90 degree pulse duration
has super-classes
o b i 3c

NMR_analysisc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400006

def: The analysis of one NMR sample at one time by NMR producing one raw dataset (a FID). synonym: NMR analysis
has super-classes
analysisc

NMR_Casec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400203

def: The NMR Case is an economical NMR sample changer for laboratories with modest automation needs. It expands the maximum number of samples your spectrometer can process during unattended operation to 24. The NMR Case consists of multiple components. The NMR Case exchange module installed atop your cryostat. The two front legs are adjustable, making the NMR Case compatible with many different cryostats. defprov: Bruker website
has super-classes
Bruker_autosamplerc

NMR_cryo_probec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400252

defneed
has super-classes
NMR_probec

NMR_data_pre-processingc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400041

def: The process of producing a spectrum from raw data. synonym: NMR data pre-processing
has super-classes
data_pre-processingc

NMR_data_pre-processing_parameter_setc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400114

defneed synonym: NMR data pre-processing parameter set
has super-classes
pre-processing_parameter_setc

NMR_data_pre-processing_parameter_set_by_dimensionc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400103

def: The set of variables dependent on a given pulse sequence for a given dimension that will be optimised in order to acquire a spectrum. synonym: NMR data pre-processing parameter set by dimension
has super-classes
pre-processing_parameter_setc

NMR_data_setc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400047

def: A data set that was generated within, from or for an NMR experiment. synonym: NMR data set
has super-classes
complex_datatypec
has sub-classes
pulse_sequencec

NMR_imaging_probec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400244

defneed
has super-classes
NMR_probec

NMR_instrumentc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400059

def: An Instrument which is used to carry out a NMR analysis of some sample. synonym: NMR instrument
has super-classes
o b i 47c
has sub-classes
Bruker_NMR_instrumentc, JEOL_NMR_instrumentc, Varian_NMR_instrumentc, tecmag_NMR_instrumentc

NMR_instrument_acquisition_parameter_setc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400061

def: The list of parameters that describe the instrument settings used for the acquisition of a spectrum. altdef: The set of variables dependent on a given pulse sequence that will be optimised in order to acquire a spectrum. synonym: NMR instrument acquisition parameter set
has super-classes
NMR_instrument_parameter_setc
has sub-classes
one_dimensional_NMR_acquisition_parameter_setc, two_dimensional_NMR_acquisition_parameter_setc

NMR_instrument_configurationc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400184

def: The configuration of an NMR Instrument. synonym: NMR_instrument_configuration
has super-classes
instrument_configurationc
has sub-classes
one_dimensional_NMR_configurationc, two_dimensional_NMR_configurationc

NMR_instrument_parameter_setc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400196

defneed
has super-classes
NMR_parameter_setc
has sub-classes
NMR_instrument_acquisition_parameter_setc

NMR_magnetc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400185

def: A magnet which induces a certain frequency (MHz) and which has a certain bore diameter. altdef: The NMR signal is a natural physical property of the certain atomic nuclei but it can only be detected with an external magnetic field. A magnet is a fundamental part of an NMR instrument which induces an electromagnetic force field (RF pulse) and by this excites and aligns the spins of the electrons of the nmr acquisition nucleus. It is usually a big (superconducting) electromagnet which is cooled by liquid helium and can be adjusted to a frequency between 200 and 950 MHz. The magnetic field strength is measured in Tesla or Gauss.
has super-classes
cardinal_part_of_NMR_instrumentc
has sub-classes
Bruker_NMR_magnetc

NMR_parameter_setc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400101

defneed
has super-classes
o b i 11c
has sub-classes
NMR_instrument_parameter_setc, NMR_quality_check_parameter_setc, NMR_spectral_projection_parameter_setc, NMR_spectrum_post-processing_parameter_setc, NMR_two_dimensional_J-resolved_processing_parameter_setc, pre-processing_parameter_setc

NMR_plattformc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400202

Current version:
TODO: What is the differrence to NMR instrument?
defneed
has super-classes
o b i 50c

NMR_probec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400014

def: Part of an NMR instrument that detects the signals emitted from a sample. No single probe can perform the full range of experiments, and probes that are designed to perform more than one type of measurement usually suffer from performance compromises. The probe represents a rather fragile “single point of failure” that can render an NMR system completely unusable if the probe is dropped or otherwise damaged. Probes are usually characterised by Sample diameter and Frequency. altdef: The instrument that transmits and recieves radiofrequency to and from the NMR sample.
has super-classes
cardinal_part_of_NMR_instrumentc
has sub-classes
Bruker_NMR_probec, JEOL_NMR_probec, NMR_cryo_probec, NMR_imaging_probec, liquid_NMR_probec, solid_NMR_probec

NMR_quality_checkc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400116

def: The process of ensuring the quality of the raw data that results from an NMR analysis. synonym: NMR quality check
has super-classes
quality_checkc

NMR_quality_check_parameter_setc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400107

tempdef: A nuclear magnetic resonance spectroscopy quality check parameter set is a parameter set used for the quality check method for an NMR analysis synonym: NMR quality check parameter set
has super-classes
NMR_parameter_setc

NMR_quality_check_resultc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400126

def: A result of an NMR quality check. synonym: NMR quality check result
has super-classes
quality_check_resultc

NMR_samplec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400128

def: A sample that has been prepared for chemical analysis by NMR. NMR samples are usually liquid solutions contained in glass tubes. NMR solution sample volume ranges from 50ul to 5ml depending on the NMR probe. Sample concentrations of solute for 1H NMR are usually in the range of 100ug to 5g, with 10 to 50mg being typical. NMR is not a chemical trace analysis technique. The NMR signal of solids and gases can be recorded but to measure solid-state NMR additional specialized hardware is required. synonym: NMR sample
has super-classes
samplec

NMR_sample_holderc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400212

def: A NMR sample holder is the part of an NMR instrument, which carries the nmr probe,sample tube and the nmr sample.
has super-classes
cardinal_part_of_NMR_instrumentc
has sub-classes
Bruker_MATCHc

NMR_sample_referencec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400124

def: A reference to information on the provenance of the NMR sample. synonym: NMR sample reference
has super-classes
referencec

NMR_softwarec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400213

defneed
has super-classes
o b i 10c
has sub-classes
Bruker_NMR_softwarec, JEOL_NMR_softwarec

NMR_solventc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400035

def: A compound added to a sample to an NMR sample to align the spectrometer frequency. synonym: NMR solvent
has super-classes
rolec

NMR_spectral_post-processingc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400039

def: The process of producing an annotated spectrum from a pre-processed spectrum. synonym: NMR spectral post processing
has super-classes
data_post-processingc

NMR_spectral_projection_parameter_setc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400105

def: The data processing parameters that describe a method of translating a 2D NMR pre-processed spectrum into a 1D NMR spectrum. synonym: NMR spectral projection parameter set
has super-classes
NMR_parameter_setc

NMR_spectrumc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400183

tempdef: A frequency sorted array of the NMR signal frequency components. Nuclei with different resonance frequencies will show up as peaks at different corresponding frequencies in the spectrum, or 'lines'. synonym: NMR spectrum
has super-classes
cardinal_part_of_NMR_data_setc
has sub-classes
bucketed_spectrumc, one_dimensional_spectrumc, peak-picked_spectrumc, projected_spectrumc, two_dimensional_spectrumc

NMR_spectrum_post-processing_parameter_setc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400106

Current version:
TODO: altsprcls: process, not clear wether set is plural (list) or process.
def: A description of the post-processing strategy used to convert a pre-processed NMR spectrum into a suitable data format for chemometric analysis. synonym: NMR spectrum post-processing parameter set
has super-classes
NMR_parameter_setc

NMR_Suitec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400216

has super-classes
Bruker_NMR_softwarec

NMR_tube_washing_systemc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400204

defneed
has super-classes
o b i 47c
has sub-classes
Bruker_AutoCleanc

NMR_two_dimensional_J-resolved_processing_parameter_setc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400104

def: The list of parameters that describe the settings used to process a 2D J-resolved NMR spectrum. altdeft: The set of variables associated with adjusting the spectrum in the frequency domain to phase, baseline correct and integrate a spectrum. synonym: NMR 2D J-resolved processing parameter set
has super-classes
NMR_parameter_setc

NMR_vendorc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400255

defneed
has super-classes
vendorc
has sub-classes
Acorn_NMR_Incc, Brukerc, Doty_Scientificc, JEOLc, JS_Researchc, MR_Resourcesc, Varianc, Wilmadc, tecmagc

non-fourier_transformationc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400045

Current version:
TODO:Exclusion guided definition.
tempdef: A non FT based method for converting from the time to the frequency domain.
has super-classes
data_transformationc

normalisation_strategyc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400064

def: A strategy for normalising a data set.
has super-classes
data_transformationc

nuclear_overhauser_and_exchange_spectroscopy-presatc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400142

tempdef: The presat for an nuclear overhauser and exchange spectroscopy experiment. A 2D method used to map NOE correlations between protons within a molecule. The nuclear Overhauser effect (NOE) causes changes in peak areas, as a secondary effect of decoupling. defprov: Daniel Schober synonym: NOESY-presat
has super-classes
water_suppression_methodc

number_of_data_pointsc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400017

Current version:
TODO: Def not aristotelian.
tempdef: The number of data points in a data set.
has super-classes
o b i 3c

number_of_scansc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400087

def: The number of repeat scans performed and summed to create the data set for an NMR sample.
has super-classes
o b i 20c

number_of_steady_state_scansc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400088

def: The number of scans whose data is not summed to create the data set for an NMR sample, but that are carried out to establish the steady-state of relaxation for the nuclei.
has super-classes
o b i 20c

one_dimensionalc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400169

def: One dimensional (referring to a FID, pre-processed spectrum, or post-processed spectrum). synonym: 1D
has super-classes
pulse_sequencec

one_dimensional_carr_purcell_meiboom_gillc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400167

tempdef: A modification of Carr-Purcell RF pulse sequence with 90° phase shift in the rotating frame of reference between the 90° pulse and the subsequent 180° pulses to reduce accumulating effects of imperfections in the 180° pulses. Suppression of effects of pulse error accumulation can alternatively be achieved by alternating phases of the 180° pulses by 180°. defprov: Daniel Schober synonym: 1D_CPMG
has super-classes
pulse_sequencec

one_dimensional_diffusion_editedc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400172

defneed synonym: 1D diffusion edited
has super-classes
pulse_sequencec

one_dimensional_free_induction_decayc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400159

def: Having been excited by the RF pulse, the nuclei turn back ("relax") to their initial state ( the initial equilibrium population) within usually several seconds when the induced magnetization decays. Since the precession of the nuclei is free and due to the decay of the induced magnetization the whole process is termed Free Induction Decay (FID). Usually, several FIDs are co-added in order to improve the signal-to-noise ratio of a spectrum. The summed up FID is then once subjected to a mathematical operation (Fourier transform) which results in an NMR spectrum. synonym: 1D_FID
has super-classes
cardinal_part_of_NMR_data_setc

one_dimensional_NMR_acquisition_parameter_setc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400165

defneed synonym: 1D NMR acquisition parameter set
has super-classes
NMR_instrument_acquisition_parameter_setc

one_dimensional_NMR_configurationc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400163

Current version:
TODO: Definition depends on sprcls.
tempdef: The process of configuring an NMR instrument for 1D NMR analysis. defprov: Daniel Schober synonym: 1D NMR configuration
has super-classes
NMR_instrument_configurationc

one_dimensional_spectrumc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400161

defneed synonym: 1D spectrum
has super-classes
NMR_spectrumc

optional_part_of_NMR_instrumentc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400001

Current version:
TODO: Discuss "obligatory_part_of".
def: Part of an NMR instrument which is not cardinally important and hence optional / facultative for the proper intended function of the instrument. synonym: optional part of NMR instrument clsdel: ontologically there is no such universal which characteristic is a possible (!) state of being a part of something...
has super-classes
o b i 47c

Paravisionc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400218

has super-classes
Bruker_NMR_softwarec

peak-picked_spectrumc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400010

Current version:
TODO: has spectral post processing parameter.
defneed
has super-classes
NMR_spectrumc

peak_pickingc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400137

defneed
has super-classes
spectrum_post-processingc

polynomial_fittingc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400111

defneed
has super-classes
post-acquisition_water_suppression_methodc

post-acquisition_water_suppression_methodc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400108

tempdef: A data processing technique used to suppress the water peak in a spectrum in order to get clearer results. defprov: Daniel Schober
has super-classes
water_suppression_methodc
has sub-classes
WaveWatc, convolutionc, hankel_singular_value_decompositionc, polynomial_fittingc

post-processing_algorithmc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400004

def: An algorithm for achieving a post-processed spectrum.
has super-classes
algorithmc

pre-processing_parameter_setc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400113

defneed
has super-classes
NMR_parameter_setc
has sub-classes
NMR_data_pre-processing_parameter_setc, NMR_data_pre-processing_parameter_set_by_dimensionc

presatc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400140

defneed synonym: presaturation
has super-classes
water_suppression_methodc

processing_parameter_set_file_referencec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400123

def: A reference to a file of data pre-processing parameters produced by the machine.
has super-classes
file_referencec

projected_spectrumc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400008

tempdef: The data matrix a spectrum consists of can be projected from a higher dimension onto a lower dimension, e.g. a 3D NMR spectrum can be converted (projected) into a 2D NMR spectrum. defprov: Daniel Schober
has super-classes
NMR_spectrumc

projection_axisc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400020

def: The axis onto which the spectrum was projected.
has super-classes
o b i 3c

projection_methodc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400075

A method of spectral projection.
has super-classes
encoding_methodc
has sub-classes
G_matrix_fourier_transform_projectionc, maximum_intensity_projectionc, summation_projectionc

pulse_sequencec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400037

def: A sequence of excitation pulses.
has super-classes
NMR_data_setc
has sub-classes
one_dimensionalc, one_dimensional_carr_purcell_meiboom_gillc, one_dimensional_diffusion_editedc, two_dimensional_J-resolvedc, two_dimensional_hadamard_total_correlation_spectroscopyc, two_dimensional_total_correlation_spectroscopyc

pulse_sequence_file_referencec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400122

def: A reference to a file containing a specification of a pulse sequence.
has super-classes
file_referencec

pulse_sequence_literature_referencec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400120

def: A reference to a description of a pulse sequence in the literature.
has super-classes
referencec

quality_checkc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400182

tempdef: A quality check is a quality control method, which is applied to data after they have been processed. It is applied to get information about the quality of the data processing methods. defprov: Daniel Schober
has super-classes
quality_control_methodc
has sub-classes
NMR_quality_checkc

quality_check_compound_signalc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400034

def: The compound that produced a peak that is measured to assess the quality of a data set.
has super-classes
rolec

quality_check_peak_featurec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400086

def: A feature of a peak that is measured to assess the quality of a data set.
has super-classes
o b i 20c

quality_check_resultc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400181

tempdef: A quality check result is the usefull outcome of a quality check. defprov: Daniel Schober
has super-classes
?resultc
has sub-classes
NMR_quality_check_resultc

quality_control_methodc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400115

tempdef: A quality control method is a method, which is applied to ensure or to verify for a good quality outcome. defprov: Daniel Schober
has super-classes
methodc
has sub-classes
quality_checkc

quantum_momentum_field_gradientc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400050

tempdef: Quantum Moment/Field Gradient interaction or relaxation mechanism. defprov: Daniel Schober synonym: QF
has super-classes
encoding_methodc

radon_encodingc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400055

defneed
has super-classes
encoding_methodc

referencec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400117

def: A reference is a label which refers to data elsewhere, as opposed to containing the data itself. Accessing the value that a reference refers to is called dereferencing it. References are fundamental in constructing many data structures and in exchanging information between different parts of programs and databases.
has super-classes
o b i 3c
has sub-classes
NMR_sample_referencec, file_referencec, literature_referencec, pulse_sequence_literature_referencec

relaxation_delayc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400090

def: The delay between repeat scans to allow nuclei to relax back to their steady state.
has super-classes
o b i 20c

samplec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400127

tempdef: A sample is a role that is played by an object of interest in an investigation used to obtain generalizable information about the sample source. defprov: Daniel Schober
has super-classes
rolec
has sub-classes
NMR_samplec

sample_introduction_methodc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400065

def: A method of introduction of an NMR sample to an NMR instrument.
has super-classes
methodc

sample_introduction_parameterc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400129

tempdef: A sample introduction parameter is a parameter that describes the particular method of introducing the sample under investigation into the nmr instrument.
has super-classes
o b i 20c
has sub-classes
flow_probec, magic_angle_spinning_rotorc

sample_temperaturec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400262

def: In some cases, it is necessary or advisable to control the temperature of the sample at some value other than ambient. The sample may be only slightly solubility at room temperatures, or it may be desirable to control some aspect of the dynamics of the system. In such cases, a default temperature, or some means of selecting this parameter, can be built into the experiment.
has super-classes
o b i 3c
has sub-classes
sample_temperature_in_autosamplerc, sample_temperature_in_magnetc

sample_temperature_in_autosamplerc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400024

def: The temperature of an item of analysis material whilst in an autosampler.
has super-classes
sample_temperaturec

sample_temperature_in_magnetc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400025

def: The temperature of an NMR sample whilst in the magnet of an NMR instrument.
has super-classes
sample_temperaturec

SampleJetc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400208

def: Bruker BioSpin introduces the SampleJet, a robot for NMR tube automation. The SampleJet has been consciously designed to meet the growing customer demand for simplicity, versatility and higher throughput in NMR sample tube automation. The SampleJet utilizes the modern-day industry standard for sample arrangements—the 96 well plate array. Therefore, the samples may be handled by standard lab automation devices before or after the NMR measurement. defprov: Bruker website
has super-classes
Bruker_autosamplerc

SampleRailc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400207

def: This system automatically prepares an NMR sample, inserts it into an NMR magnet, performs NMR experiments on the sample, and transports it back to the preparation system. The SampleRail fulfills the transporting tasks from the preparation system into the NMR magnet and back defprov: website
has super-classes
o b i 47c

SampleTrackc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400217

has super-classes
Bruker_NMR_softwarec

shaped_pulse_file_referencec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400121

def: A reference to a file containing a specfication of the shape of an excitation pulse.
has super-classes
file_referencec

shifted_bellc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400099

defneed synonym: sb
has super-classes
window_function_parameterc

shifted_sine_bellc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400100

tenpdef: A function used to multiply a FID by to produce a desired amount of line broadening and spectral resolution. defprov: Daniel Schober synonym: ssb
has super-classes
window_function_parameterc

sinec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400071

defneed
has super-classes
window_function_methodc

sine_squaredc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400072

defneed
has super-classes
window_function_methodc

solid_magic_angle_spinning_probec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400193

def: Magic angle spinning, nowadays a routine technique for solids NMR, still offers the capability of innovation. The high mechanical performance of MAS probes in conjunction with efficient rf pulse techniques open new exciting fields in solids NMR of biological samples and in the field of quadrupolar nuclei. defprov: Bruker website synonym: solid_MAS_probe
has super-classes
Bruker_NMR_probec

solid_NMR_probec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400243

defneed
has super-classes
NMR_probec
has sub-classes
tecmag_EAGLE_probec

spectral_denoisingc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400073

def: A method for eliminating or reducing the noise in a spectrum.
has super-classes
data_transformationc

spectrum_post-processingc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400136

defneed
has super-classes
data_transformationc
has sub-classes
bucketingc, peak_pickingc

spectrum_post-processing_softwarec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400135

def: A software artifact used during spectral post-processing.
has super-classes
o b i 10c

spinning_ratec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400028

def: The rate at which an item of analysis material is spun.
has super-classes
o b i 3c

statesc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400052

defneed
has super-classes
encoding_methodc

states-time_proportional_phase incrementationc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400053

def: A method for quadrature detection. synonym: S-TPPI
has super-classes
encoding_methodc

summation_projectionc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400077

def: .A projection method that sums the intensities of a pre-processed 2D J-resolved NMR spectrum to obtain a projected spectrum. altdef: The adding of spectra together to produce a composite avergaed spectrum.
has super-classes
projection_methodc

symmetrisec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400081

defneed
has super-classes
data_transformationc

tecmagc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400260

has super-classes
NMR_vendorc

tecmag_consolec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400246

has super-classes
consolec
has sub-classes
APOLLOc, DISCOVERYc

tecmag_EAGLE_probec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400248

def: The Eagle™ is a 4 mm 1H/X solid-state MAS probe with a top spinning speed of 18 kHz. Its simple design is robust, reliable and easy to spin. Configurations are available for 200 to 600 MHz widebore magnets on Tecmag, Bruker, Chemagnetics, JEOL and Varian spectrometers. defprov: website
has super-classes
solid_NMR_probec

tecmag_NMR_instrumentc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400250

has super-classes
NMR_instrumentc
has sub-classes
CATc

tiltc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400085

defneed
has super-classes
o b i 20c

time_proportional_phase incrementationc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400051

defneed synonym: TPPI
has super-classes
encoding_methodc

TopSpin_1.3c back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400215

has super-classes
Bruker_NMR_softwarec

tubec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400132

tempdef: The sample-tube holds the nmr sample and sits in the nmr probe. It is usually a glass tube of 5-20mm diameter.
has super-classes
cardinal_part_of_NMR_instrumentc

two_dimensional_free_induction_decayc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400160

def: Having been excited by the RF pulse, the nuclei turn back ("relax") to their initial state ( the initial equilibrium population) within usually several seconds when the induced magnetization decays. Since the precession of the nuclei is free and due to the decay of the induced magnetization the whole process is termed Free Induction Decay (FID). Usually, several FIDs are co-added in order to improve the signal-to-noise ratio of a spectrum. The summed up FID is then once subjected to a mathematical operation (Fourier transform) which results in an NMR spectrum. synonym: 2D_FID
has super-classes
cardinal_part_of_NMR_data_setc

two_dimensional_hadamard_total_correlation_spectroscopyc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400171

defneed synonym: 2D_hadamard_TOCSY
has super-classes
pulse_sequencec

two_dimensional_J-resolvedc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400170

tempdef: In one dimensional NMR, as the multiplets from different chemically shifted nuclei overlap, spectral assignments become too difficult. In order to resolve the chemical shift and spin-spin coupling parameters along the different axis, 2D and 3D J-resolved NMR spectroscopies are used. defprov: Daniel Schober synonym: 2D J-resolved
has super-classes
pulse_sequencec

two_dimensional_NMR_acquisition_parameter_setc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400166

defneed synonym: 2D NMR acquisition parameter set
has super-classes
NMR_instrument_acquisition_parameter_setc

two_dimensional_NMR_configurationc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400164

Current version:
TODO: depends on superclass view.
tempdef: The process of configuring an NMR instrument for 2D NMR analysis. defprov: Daniel Schober synonym: 2D NMR configuration
has super-classes
NMR_instrument_configurationc

two_dimensional_spectrumc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400162

defneed synonym: 2D spectrum
has super-classes
NMR_spectrumc

two_dimensional_total_correlation_spectroscopyc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400168

tempdef: Total Correlation Spectroscopy. A 2D homonuclear correlation experiment used to analyse scalar (J) coupling networks between protons. TOCSY is able to relay magnetisation between spins, A-B-C-D.., and can therefore show correlations amongst spins that are not directly coupled (eg A-C and A-D) but exist within the same spin system. defprov: Daniel Schober synonym:2D_TOCSY
has super-classes
pulse_sequencec

UltraShieldc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400187

defneed
has super-classes
Bruker_NMR_magnetc

UltraShield_Plusc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400190

has super-classes
Bruker_NMR_magnetc

Ultrastabilizedc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400188

has super-classes
Bruker_NMR_magnetc

UNITYc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400237

has super-classes
Varian_NMR_instrumentc

US_2c back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400189

Current version:
??? How to model "hoch 2"?
has super-classes
Bruker_NMR_magnetc

Varianc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400257

has super-classes
NMR_vendorc

Varian_NMR_instrumentc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400234

has super-classes
NMR_instrumentc
has sub-classes
GEMINIc, INOVAc, MERCURYc, UNITYc, VXRc

vendorc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400254

Current version:
TODO: Belongs in Ref Ontol.
defneed
has super-classes
o b i 3c
has sub-classes
NMR_vendorc

VXRc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400238

has super-classes
Varian_NMR_instrumentc

water_suppression_enhanced_through_T1_effectsc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400141

tempdef: An improved water-suppression technique called WET (water suppression enhanced through T1 effects), developed from a Bloch equation analysis of the longitudinal magnetization over the T1 and B1 ranges of interest, achieves T1- and B1-insensitive suppression with four RF pulses, each having a numerically optimized flip angle. Once flip angles have been optimized for a given sequence, time-consuming flip-angle adjustments during clinical examinations are eliminated. defprov: Daniel Schober synonym: WET
has super-classes
water_suppression_methodc

water_suppression_methodc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400066

tempdef: A technique used to suppress the water peak in a spectrum. Suppression of the strong solvent signal is necessary in order to obtain high signal to noise for the peaks of the sample under investiogation, e.g. protein peaks. defprov: Daniel Schober
has super-classes
methodc
has sub-classes
coherence_pathway_rejectionc, excitation_sculptingc, jump_and_returnc, nuclear_overhauser_and_exchange_spectroscopy-presatc, post-acquisition_water_suppression_methodc, presatc, water_suppression_enhanced_through_T1_effectsc, watergatec

water_suppression_parameterc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400139

defneed
has super-classes
o b i 20c

watergatec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400143

defneed
has super-classes
water_suppression_methodc
has sub-classes
flip-back_watergatec

WaveWatc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400112

def: A computational method that archieves water suppression via wavlet multi resolution analysis.
has super-classes
post-acquisition_water_suppression_methodc

Wilmadc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400265

has super-classes
NMR_vendorc

window_function_methodc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400068

def: A function applied to a FID to increase the signal-to-noise ratio or the resolution.
has super-classes
methodc
has sub-classes
exponential_multiplicationc, gaussian_broadeningc, sinec, sine_squaredc

window_function_parameterc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400096

def: A parameter to a window function.
has super-classes
o b i 20c
has sub-classes
line_broadeningc, line_sharpeningc, shifted_bellc, shifted_sine_bellc

x-axis_unitc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400091

def: The units of measure for the x-axis of a (1D or 2D) FID, (1D or 2D) pre-processed spectrum, 2D projected spectrum, and (1D or 2D) post-processed spectrum. altdef: The units used to represent either time domain (for a FID) or the frequency domain (for a spectrum).
has super-classes
o b i 20c

x_end_valuec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400095

tempdef: The end value for the x-axis of a (1D or 2D) FID, (1D or 2D) pre-processed spectrum, 2D projected spectrum, and (1D or 2D) post-processed spectrum.
has super-classes
o b i 20c

x_start_valuec back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400094

def: The starting value for the x-axis of a (1D or 2D) FID, (1D or 2D) pre-processed spectrum, 2D projected spectrum, and (1D or 2D) post-processed spectrum. altdef: The initial time or frequency a FID or spectrum is recorded from.
has super-classes
o b i 20c

y-axis_unitc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400092

defneed
has super-classes
o b i 20c

zero_order_phase_correctionc back to ToC or Class ToC

IRI: http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400079

def: A parameter used to mix real and imaginary part of an NMR spectrum that the real part of the spectrum is in pure absorption mode. altdef: The number of degrees that a central peak must be moved in order to achieve an absorptive mode line width.
has super-classes
data_transformationc

Annotation Properties

action itemap back to ToC or Annotation Property ToC

IRI: http://www.msi-ontology.sourceforge.net/ontology/RU_metadata.owl#action_item

alt defap back to ToC or Annotation Property ToC

IRI: http://www.msi-ontology.sourceforge.net/ontology/RU_metadata.owl#alt_def

cls provap back to ToC or Annotation Property ToC

IRI: http://www.msi-ontology.sourceforge.net/ontology/RU_metadata.owl#cls_prov

curation statusap back to ToC or Annotation Property ToC

IRI: http://www.msi-ontology.sourceforge.net/ontology/RU_metadata.owl#curation_status

editorap back to ToC or Annotation Property ToC

IRI: http://www.msi-ontology.sourceforge.net/ontology/RU_metadata.owl#editor

modif dateap back to ToC or Annotation Property ToC

IRI: http://www.msi-ontology.sourceforge.net/ontology/RU_metadata.owl#modif_date

pref cls nameap back to ToC or Annotation Property ToC

IRI: http://www.msi-ontology.sourceforge.net/ontology/RU_metadata.owl#pref_cls_name

rightsap back to ToC or Annotation Property ToC

IRI: http://www.msi-ontology.sourceforge.net/ontology/RU_metadata.owl#rights

scope noteap back to ToC or Annotation Property ToC

IRI: http://www.msi-ontology.sourceforge.net/ontology/RU_metadata.owl#scope_note

synonymap back to ToC or Annotation Property ToC

IRI: http://www.msi-ontology.sourceforge.net/ontology/RU_metadata.owl#synonym

temp defap back to ToC or Annotation Property ToC

IRI: http://www.msi-ontology.sourceforge.net/ontology/RU_metadata.owl#temp_def

unresolved issueap back to ToC or Annotation Property ToC

IRI: http://www.msi-ontology.sourceforge.net/ontology/RU_metadata.owl#unresolved_issue

Namespace Declarations back to ToC

default namespace
http://msi-ontology.sourceforge.net/ontology/NMR.owl#
RU_metadata
http://www.msi-ontology.sourceforge.net/ontology/RU_metadata.owl#
dc
http://purl.org/dc/elements/1.1/
obi-owl
http://obi.sourceforge.net/ontology/OBI.owl#
ontology
http://msi-ontology.sourceforge.net/ontology/
owl
http://www.w3.org/2002/07/owl#
protege
http://protege.stanford.edu/plugins/owl/protege#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
snap
http://www.ifomis.org/bfo/1.0/snap#
xsd
http://www.w3.org/2001/XMLSchema#

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni.