PGxO: a lite Pharmacogenomic Ontology

IRI:
http://pgxo.loria.fr/
Current version :
0.5
Authors :
Adrien Coulet, Loria - Inria, Université de Lorraine
Clément Jonquet, LIRMM, Université de Montpellier
Pierre Monnin, Loria (CNRS, Inria Nancy-Grand Est, Université de Lorraine)
Other visualisation :
Ontology source - WebVowl

Abstract

Change pgxo:causes to a set of potential relationships - more granularity added - add negative relationships (not semantically defined) e.g. isNotAssociatedWith (note that isAssociatedWith is not defined as disjoint with isNotAssociatedWith whereas it could be)

Table of Content

  1. Classes
  2. Object Properties
  3. Data Properties
  4. Annotation Properties
  5. Namespace Declarations

Classes

Diseasec back to ToC or Class ToC

IRI: http://pgxo.loria.fr/Disease

has super-classes
Phenotypec

Drugc back to ToC or Class ToC

IRI: http://pgxo.loria.fr/Drug

Entityc back to ToC or Class ToC

IRI: http://www.ontologydesignpatterns.org/ont/dul/DUL.owl#Entity

has sub-classes
Qualityc, generationc
is in domain of
has data valuedp, has qualityop

Genec back to ToC or Class ToC

IRI: http://pgxo.loria.fr/Gene

has super-classes
Genetic factorc

generationc back to ToC or Class ToC

IRI: http://www.w3.org/ns/prov#Generation

has super-classes
Entityc

Genetic factorc back to ToC or Class ToC

IRI: http://pgxo.loria.fr/GeneticFactor

has sub-classes
Genec, Genomic variationc

Genomic variationc back to ToC or Class ToC

IRI: http://pgxo.loria.fr/GenomicVariation

has super-classes
Genetic factorc
has sub-classes
Haplotypec, Variantc

Haplotypec back to ToC or Class ToC

IRI: http://pgxo.loria.fr/Haplotype

has super-classes
Genomic variationc

Pharmacodynamic phenotypec back to ToC or Class ToC

IRI: http://pgxo.loria.fr/PharmacodynamicPhenotype

has super-classes
Phenotypec

Pharmacogenomic relationshipc back to ToC or Class ToC

IRI: http://pgxo.loria.fr/PharmacogenomicRelationship

has super-classes
entityc

Pharmacokinetic phenotypec back to ToC or Class ToC

IRI: http://pgxo.loria.fr/PharmacokineticPhenotype

has super-classes
Phenotypec

Phenotypec back to ToC or Class ToC

IRI: http://pgxo.loria.fr/Phenotype

has sub-classes
Diseasec, Pharmacodynamic phenotypec, Pharmacokinetic phenotypec

Qualityc back to ToC or Class ToC

IRI: http://www.ontologydesignpatterns.org/ont/dul/DUL.owl#Quality

has super-classes
Entityc
is in range of
has qualityop

Variantc back to ToC or Class ToC

IRI: http://pgxo.loria.fr/Variant

has super-classes
Genomic variationc

Object Properties

causesop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/causes

has super-properties
influencesop
is inverse of
is caused byop

decreasesop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/decreases

has super-properties
influencesop
is inverse of
is decreased byop

decreases chance ofop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/decreasesChanceOf

has super-properties
influencesop
is inverse of
has chance decreased byop

depends onop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002502

does not causeop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/doesNotCause

has super-properties
does not influenceop
is inverse of
is not caused byop

does not decreaseop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/doesNotDecrease

has super-properties
does not influenceop
is inverse of
is not decreased byop

does not decrease chance ofop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/doesNotDecreaseChanceOf

has super-properties
does not influenceop
is inverse of
has not chance decreased byop

does not increaseop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/doesNotIncrease

has super-properties
does not influenceop
is inverse of
is not increased byop

does not increase chance ofop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/doesNotIncreaseChanceOf

has super-properties
does not influenceop
is inverse of
has not chance increased byop

does not influenceop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/doesNotInfluence

has super-properties
is not associated withop
has sub-properties
does not causeop, does not decreaseop, does not decrease chance ofop, does not increaseop, does not increase chance ofop, does not metabolizeop, does not transportop
is inverse of
is not influenced byop

does not metabolizeop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/doesNotMetabolize

has super-properties
does not influenceop
is inverse of
is not metabolized byop

does not transportop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/doesNotTransport

has super-properties
does not influenceop
is inverse of
is not transported byop

does not treatop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/doesNotTreat

has super-properties
is not associated withop
is inverse of
is not treated byop

has chance decreased byop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/hasChanceDecreasedBy

has super-properties
is influenced byop
is inverse of
decreases chance ofop

has chance increased byop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/hasChanceIncreasedBy

has super-properties
is influenced byop
is inverse of
increases chance ofop

has not chance decreased byop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/hasNotChanceDecreasedBy

has super-properties
is not influenced byop
is inverse of
does not decrease chance ofop

has not chance increased byop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/hasNotChanceIncreasedBy

has super-properties
is not influenced byop
is inverse of
does not increase chance ofop

has partop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000051

is inverse of
part ofop

has qualityop back to ToC or Object Property ToC

IRI: http://www.ontologydesignpatterns.org/ont/dul/DUL.owl#hasQuality

has domain
Entityc
has range
Qualityc

increasesop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/increases

has super-properties
influencesop
is inverse of
is increased byop

increases chance ofop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/increasesChanceOf

has super-properties
influencesop
is inverse of
has chance increased byop

influencesop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/influences

has super-properties
is associated withop
has sub-properties
causesop, decreasesop, decreases chance ofop, increasesop, increases chance ofop, metabolizesop, transportsop
is inverse of
is influenced byop

is associated withop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/isAssociatedWith

has characteristics : symmetric

has sub-properties
influencesop, is influenced byop, is treated byop, treatsop

is caused byop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/isCausedBy

has super-properties
is influenced byop
is inverse of
causesop

is decreased byop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/isDecreasedBy

has super-properties
is influenced byop
is inverse of
decreasesop

is increased byop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/isIncreasedBy

has super-properties
is influenced byop
is inverse of
increasesop

is influenced byop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/isInfluencedBy

has super-properties
is associated withop
has sub-properties
has chance decreased byop, has chance increased byop, is caused byop, is decreased byop, is increased byop, is metabolized byop, is transported byop
is inverse of
influencesop

is metabolized byop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/isMetabolizedBy

has super-properties
is influenced byop
is inverse of
metabolizesop

is not associated withop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/isNotAssociatedWith

has characteristics : symmetric

has sub-properties
does not influenceop, does not treatop, is not influenced byop, is not treated byop

is not caused byop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/isNotCausedBy

has super-properties
is not influenced byop
is inverse of
does not causeop

is not decreased byop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/isNotDecreasedBy

has super-properties
is not influenced byop
is inverse of
does not decreaseop

is not increased byop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/isNotIncreasedBy

has super-properties
is not influenced byop
is inverse of
does not increaseop

is not influenced byop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/isNotInfluencedBy

has super-properties
is not associated withop
has sub-properties
has not chance decreased byop, has not chance increased byop, is not caused byop, is not decreased byop, is not increased byop, is not metabolized byop, is not transported byop
is inverse of
does not influenceop

is not metabolized byop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/isNotMetabolizedBy

has super-properties
is not influenced byop
is inverse of
does not metabolizeop

is not transported byop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/isNotTransportedBy

has super-properties
is not influenced byop
is inverse of
does not transportop

is not treated byop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/isNotTreatedBy

has super-properties
is not associated withop
is inverse of
does not treatop

is transported byop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/isTransportedBy

has super-properties
is influenced byop
is inverse of
transportsop

is treated byop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/isTreatedBy

has super-properties
is associated withop
is inverse of
treatsop

metabolizesop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/metabolizes

has super-properties
influencesop
is inverse of
is metabolized byop

part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000050

is inverse of
has partop

transportsop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/transports

has super-properties
influencesop
is inverse of
is transported byop

treatsop back to ToC or Object Property ToC

IRI: http://pgxo.loria.fr/treats

has super-properties
is associated withop
is inverse of
is treated byop

Data Properties

has data valuedp back to ToC or Data Property ToC

IRI: http://www.ontologydesignpatterns.org/ont/dul/DUL.owl#hasDataValue

has domain
Entityc

Annotation Properties

creatorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/creator

Namespace Declarations back to ToC

default namespace
http://pgxo.loria.fr/
dc
http://purl.org/dc/elements/1.1/
dul-owl
http://www.ontologydesignpatterns.org/ont/dul/DUL.owl#
obo
http://purl.obolibrary.org/obo/
owl
http://www.w3.org/2002/07/owl#
prov
http://www.w3.org/ns/prov#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
xsd
http://www.w3.org/2001/XMLSchema#

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni .