made by pyLODE 2.10.0

AFO Relation (REC/2020/09)

Metadata

URI
http://purl.allotrope.org/voc/afo/REC/2020/09/relation
Publisher(s)
Allotrope Foundation
Contributor(s)
Allotrope Foundation
Modified
2020-06-24T12:00:00+00:00
Issued
2020-06-30T12:00:00+00:00
Version Information
REC/2020/09
Version URI
http://purl.allotrope.org/voc/afo/REC/2020/09/relation
Imports
http://purl.allotrope.org/voc/afo/REC/2020/09/aft
http://purl.allotrope.org/voc/afo/perspective/REC/2020/09/portion-of-material
http://purl.allotrope.org/voc/afo/perspective/REC/2020/09/system
License & Rights
http://purl.allotrope.org/voc/creative-commons-attribution-license
http://purl.allotrope.org/voc/attribution
Ontology RDF
RDF (turtle)

Description

Allotrope Ontology of standard relations. (REC/2020/09)

Table of Contents

  1. Classes
  2. Object Properties
  3. Datatype Properties
  4. Annotation Properties
  5. Named Individuals
  6. Namespaces
  7. Legend

Overview

Pictures say 1,000 words
Figure 1: Ontology overview

Classes

AFC_0000050c # Classes

URI http://purl.allotrope.org/ontologies/common#AFC_0000050
In range of af-x:AFX_0002801op

AFC_0000090c # Classes

URI http://purl.allotrope.org/ontologies/common#AFC_0000090
In domain of af-x:AFX_0000355op
In range of af-x:AFX_0000408op

AFE_0000847c # Classes

URI http://purl.allotrope.org/ontologies/equipment#AFE_0000847
In range of af-x:AFX_0000974op

AFM_0000880c # Classes

URI http://purl.allotrope.org/ontologies/material#AFM_0000880
In domain of af-x:AFX_0002740op
af-x:AFX_0002741op

AFR_0000916c # Classes

URI http://purl.allotrope.org/ontologies/result#AFR_0000916
In domain of af-x:AFX_0002806op
In range of af-x:AFX_0001154op

AFR_0000917c # Classes

URI http://purl.allotrope.org/ontologies/result#AFR_0000917
In domain of af-x:AFX_0002717op

AFR_0000923c # Classes

URI http://purl.allotrope.org/ontologies/result#AFR_0000923
In domain of af-x:AFX_0002729op
In range of af-x:AFX_0002803op

AFR_0000938c # Classes

URI http://purl.allotrope.org/ontologies/result#AFR_0000938

AFR_0000992c # Classes

URI http://purl.allotrope.org/ontologies/result#AFR_0000992
In range of af-x:AFX_0002737op

AFR_0001561c # Classes

URI http://purl.allotrope.org/ontologies/result#AFR_0001561
In domain of af-x:AFX_0002842op

AFRL_0000012c # Classes

URI http://purl.allotrope.org/ontologies/role#AFRL_0000012

AFRL_0000015c # Classes

URI http://purl.allotrope.org/ontologies/role#AFRL_0000015

BFO_0000003c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000003
In domain of cdao:BFO_0000132op
cdao:RO_0002222op
cdao:BFO_0000066op
cdao:BFO_0000138op
cdao:BFO_0000130op
af-x:AFX_0002718op
cdao:RO_0002012op
cdao:BFO_0000117op
cdao:BFO_0000139op
cdao:RO_0002501op
cdao:RO_0000057op
In range of cdao:BFO_0000139op
cdao:BFO_0000132op
cdao:RO_0002222op
cdao:RO_0002501op
cdao:BFO_0000138op
cdao:RO_0002012op
cdao:BFO_0000117op
cdao:RO_0000056op

BFO_0000004c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000004
In domain of cdao:RO_0001025op
cdao:RO_0002176op
cdao:RO_0001015op
cdao:BFO_0000083op
cdao:RO_0000087op
cdao:RO_0000085op
cdao:RO_0002150op
cdao:RO_0000091op
In range of cdao:RO_0001025op
cdao:RO_0002150op
cdao:BFO_0000066op
cdao:RO_0001015op

BFO_0000015c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000015
In domain of cdao:BFO_0000184op
af-x:AFX_0002686op
af-x:AFX_0000834op
cdao:BFO_0000055op
cdao:RO_0002334op
cdao:RO_0002211op
af-x:AFX_0002848op
cdao:BFO_0000119op
In range of af-x:AFX_0002734op
af-x:AFX_0002703op
cdao:RO_0002211op
cdao:RO_0002595op
af-x:AFX_0000554op
cdao:BFO_0000054op
af-x:AFX_0002731op
af-x:AFX_0000553op
af-x:AFX_0002848op
af-x:AFX_0002855op
cdao:RO_0002334op
af-x:AFX_0002735op
cdao:BFO_0000185op

BFO_0000020c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000020
In domain of cdao:RO_0000059op
In range of cdao:RO_0000058op
cdao:RO_0000053op

BFO_0000023c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000023
In range of cdao:RO_0000087op

IAO_0000005c # Classes

URI http://purl.obolibrary.org/obo/IAO_0000005

IAO_0000030c # Classes

URI http://purl.obolibrary.org/obo/IAO_0000030
In domain of cdao:IAO_0000136op
af-x:AFX_0002734op
af-x:AFX_0000553op
af-x:AFX_0002803op
af-x:AFX_0002730op
af-x:AFX_0002736op
af-x:AFX_0002744op
af-x:AFX_0002737op
In range of af-x:AFX_0002729op
af-x:AFX_0000542op
af-x:AFX_0000544op
af-x:AFX_0002744op

systemc # Classes

URI http://purl.obolibrary.org/obo/RO_0002577
Super-classes cdao:BFO_0000040c
In domain of af-x:AFX_0000972op
cdao:RO_0002509op
cdao:RO_0002507op

quantity kindc # Classes

URI http://qudt.org/schema/qudt#QuantityKind
In range of qudt:quantityKindop

QuantityValuec # Classes

URI http://qudt.org/schema/qudt#QuantityValue

Unitc # Classes

URI http://qudt.org/schema/qudt#Unit
In range of qudt:unitop

Object Properties

has durationop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000072
Description

Time is a measure in which events can be ordered from the past through the present into the future, and also the measure of durations of events and the intervals between them. [Wikipedia]

Super-properties af-x:AFX_0002686op

incrementop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000180
Description

The difference between two discrete points next to each other in a range of discrete values. [Allotrope]

Example(s)
A device property can be set between a minimum and maximum value but only in steps of the increment value.

Step size of sweeping over 2Theta, unit °

selectsop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000197
Description

Any participant p of the process that influences the process but is not essentially changed by a process. [Allotrope]

Example(s)
For the process of titration a pH meter is used as well as a sample and a standard solution. [Allotrope]

Super-properties cdao:RO_0000057op

refinesop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000234
Description

This relation indicates that the subject is a more concrete instance of the object. [Allotrope]

minimumop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000314
Description

The lowest value of a range or a set of values. [Allotrope]

Super-properties owl:topObjectProperty

maximumop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000331
Description

Highest value of a range. [Allotrope]

Super-properties owl:topObjectProperty

output ofop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000353
Description

Relates an output entity such as a material or information object with a process that exists at the end of the process. [Allotrope]

Super-properties cdao:RO_0000056op
Inverse properties af-x:AFX_0000395op

input ofop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000354
Description

Relates an input entity such a material entity or information object with a process that exists at the start of the process. [Allotrope]

Super-properties cdao:RO_0000056op
Inverse properties af-x:AFX_0000399op

is condition forop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000355
Description

A condition that restricts an entity. [Allotrope]

Super-properties cdao:IAO_0000136op
Inverse properties af-x:AFX_0000408op
Domain(s) af-c:AFC_0000090c

has ingredientop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000365
Description

An ingredient is a material that enters into a compound or is part of any combination or mixture. [Allotrope]

Super-properties af-x:AFX_0002793op
Inverse properties af-x:AFX_0002845op
Domain(s) af-m:AFM_0001038c
Range(s) cdao:CHMO_0000993c

has shapeop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000386
Description

Inverse of SHACL targets e.g. sh:targetClass or sh:targetNode. [Allotrope]

has scopeop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000388
Description

A scope defines a situation or context in which a dependent entity such as a condition or contextual role occurs or is valid. [Allotrope]

Super-properties cdao:IAO_0000136op

has outputop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000395
Description

Relates a process with a continuant that participates in the process and exists at the end of the process. [Allotrope]

Super-properties cdao:RO_0000057op

has inputop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000399
Description

Relates a process with a continuant that participates in the process and exists at the start of the process. [Allotrope]

Super-properties cdao:RO_0000057op

has conditionop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000408
Description

An entity has a condition that restricts the entity in some way. [Allotrope]

Range(s) af-c:AFC_0000090c

has data inputop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000542
Description

Relates a process with an information object that participates in a process and exists the start of the process. [Allotrope]

Super-properties af-x:AFX_0000399op
Inverse properties af-x:AFX_0000553op
Range(s) cdao:IAO_0000030c

has data outputop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000544
Description

Relates a process with an information object that participates in the process and exists the end of the process. [Allotrope]

Super-properties af-x:AFX_0000395op
Inverse properties af-x:AFX_0002734op
Range(s) cdao:IAO_0000030c

has material outputop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000546
Description

The material that is output of the process. [Allotrope]

Super-properties af-x:AFX_0000395op
Inverse properties af-x:AFX_0002735op
Range(s) cdao:BFO_0000040c

has itemop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000551
Description

This property links a collection to a member item. [Allotrope]

Super-properties cdao:RO_0002351op
Inverse properties af-x:AFX_0002720op
Domain(s) af-c:AFC_0000166c
Range(s) af-c:AFC_0000167c

data input ofop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000553
Description

Inverse of 'has data input'. [Allotrope]

Super-properties af-x:AFX_0000354op
Domain(s) cdao:IAO_0000030c
Range(s) cdao:BFO_0000015c

material input ofop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000554
Description

Inverse of 'has material input'. [Allotrope]

Super-properties af-x:AFX_0000354op
Inverse properties af-x:AFX_0000696op
Domain(s) af-m:AFM_0000275c
Range(s) cdao:BFO_0000015c

maximum exclusiveop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000557
Description

The highest value of a range excluding the boundary value. [Allotrope]

Super-properties af-x:AFX_0000331op

maximum inclusiveop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000558
Description

The highest value of a range including the boundary value. [Allotrope]

Super-properties af-x:AFX_0000331op

minimum exclusiveop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000560
Description

The lowest value of a range or set of values excluding the boundary value. [Allotrope]

Super-properties af-x:AFX_0000314op

minimum inclusiveop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000561
Description

The lowest value of a range or set of values including the boundary value. [Allotrope]

Super-properties af-x:AFX_0000314op

has material inputop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000696
Description

Refers to the material entity that is an input of a process. [Allotrope]

Super-properties af-x:AFX_0000399op
Range(s) af-m:AFM_0000275c

has logop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000834
Description

The relation between a process and its log. A log is a steadily updated information object containing data of events in time such as process executions. [Allotrope]

Example(s)
log files, auto export file of cell counter devices

Inverse properties af-x:AFX_0002855op
Domain(s) cdao:BFO_0000015c
Range(s) af-r:AFR_0000900c

component ofop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000939
Description

A physical object that is a component that is a physical part of another physical object that is a system. [Allotrope]

Super-properties af-x:AFX_0002846op
Inverse properties af-x:AFX_0000972op
Domain(s) cdao:BFO_0000040c
Range(s) cdao:BFO_0000040c

composed ofop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000940
Description

The property specifies of which kind of general portion of material something is built of. [Allotrope]

Example(s)
a weighing pan that is composed of platinum [Allotrope]

Super-properties cdao:BFO_0000051op

has componentop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000972
Description

A physical object that forms a system that has as part a physical entity that is one of its components. [Allotrope]

Super-properties af-x:AFX_0002793op
Domain(s) cdao:RO_0002577c
Range(s) cdao:BFO_0000040c

has portop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000974
Description

Relation between a system and a component of it that has the role of a port in the system though which material, energy or information flows in or out of the system. [Allotrope]

Super-properties af-x:AFX_0000972op
Range(s) af-e:AFE_0000847c

has capabilityop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000976
Description

The relation of an entity to a description of it which refers to the qualification of an entity to perform a certain function. [Allotrope]

Example(s)
a part of a data sheet

Inverse properties af-x:AFX_0002856op
Range(s) af-r:AFR_0001103c

containsop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0001048
Description

The relation between a container and its physical content. A material entity a contains a material entity b if b is located in some cavity of a. [Allotrope]

Super-properties cdao:RO_0001015op
Inverse properties af-x:AFX_0001049op
Domain(s) af-e:AFE_0000407c
Range(s) cdao:BFO_0000040c

contained inop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0001049
Description

Inverse of contains. [Allotrope]

Super-properties cdao:RO_0001025op
Domain(s) cdao:BFO_0000040c
Range(s) af-e:AFE_0000407c

has classificationop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0001154
Description

A classification is a kind of categorization in order to differentiate between different classes of objects. [Allotrope]

Inverse properties af-x:AFX_0002806op
Range(s) af-r:AFR_0000916c

connected to sourceop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0001178
Description

A system that is attached to another system by an ingoing port. [Allotrope]

Super-properties cdao:RO_0002170op

connected to destinationop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0001179
Description

A system that is attached to another system by an outgoing port. [Allotrope]

Super-properties cdao:RO_0002170op

has referenceop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0001550
Description

Reference object relates an entity A to some entity B that is taken as a reference for A in a certain context. [Allotrope]

Example(s)
reference for comparison

reference process

reference object

Super-properties owl:topObjectProperty

satisfiesop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002674
Description

The relation between a proposition about of a portion of reality and a process asserting that the process is described truthfully by the description. [Allotrope]

Domain(s) af-r:AFR_0000991c
Range(s) http://purl.obolibrary.org/obo/BFO_0000015 http://purl.obolibrary.org/obo/BFO_0000035

by way ofop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002677
Description

The relation between a function with an objective and another function that when realized acts as a proxy to achieve the objective of the first. [Allotrope]

Domain(s) cdao:BFO_0000034c
Range(s) cdao:BFO_0000034c

tracks qualityop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002682
Description

A relation between a process profile and a changing determinable quality of some participant of the process of the profile. [Allotrope]

Example(s)
An profile of the absorption in a chromatography is quality process profile of the quality absorption of some participating material. [Allotrope]

Super-properties owl:topObjectProperty
Inverse properties af-x:AFX_0002685op
Domain(s) af-p:AFP_0003281c
Range(s) cdao:BFO_0000019c

quantified byop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002684
Description

Relation of something that is quantified by some quantity value which expresses it relative to some other thing. [Allotrope]

Example(s)
The duration of a process expressed as 60 sec expresses it in quantitative relation to the duration of some second defining process specified in the SI systems of units.

Super-properties af-x:AFX_0002802op
Inverse properties af-x:AFX_0002816op

quality tracked byop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002685
Description

The relation between a quality and a process profile in which the quality is changing. [Allotrope]

Super-properties owl:topObjectProperty
Domain(s) cdao:BFO_0000019c
Range(s) af-p:AFP_0003281c

process quantified byop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002686
Description

Relation of some process that is quantified by some quantity value which expresses its duration relative to other process or a temporal aggregation function on the quantification of a quality of some participant over this duration. [Allotrope]

Example(s)
The process of injection has a material flow profile of the injected material that is quantified by the volume of 1 mL/sec.

Super-properties af-x:AFX_0002718op
Domain(s) cdao:BFO_0000015c

profile mean quantified byop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002687
Description

The quantity value that is the result of averaging a quality of some participant of the process over the duration of the process or the quantification of the participant's quality at the temporal granularity of the duration of the process. [Allotrope]

Super-properties af-x:AFX_0002686op
Domain(s) cdao:BFO_0000144c

profile maximum quantified byop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002688
Description

The temporal maximum quantified by is the maximum of the quantification of some quality of a participant that occurred during the process. [Allotrope]

Super-properties af-x:AFX_0002686op
Domain(s) cdao:BFO_0000144c

profile minimum quantified byop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002689
Description

The temporal minimum quantified by is the minimum of the quantification of some quality of a participant that occurred during the process. [Allotrope]

Super-properties af-x:AFX_0002686op
Domain(s) cdao:BFO_0000144c

quality quantified byop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002690
Description

Quantification of some determinate quality which expresses it relative to some other (known) determinate quality. [Allotrope]

Example(s)
A portion of water has some determinate temperature quality that is quantified by the quantity value of 15° C.

Super-properties af-x:AFX_0002684op
Domain(s) cdao:BFO_0000019c

has rangeop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002696
Description

Relation to a data item that describes the boundaries of possible or existing qualities, process profiles or process durations that can be ordered. [Allotrope]

Super-properties af-x:AFX_0002803op
Range(s) af-c:AFC_0000021c

describesop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002699
Description

Describes is a property of an entity which has the ability to indicate or denote certain characteristics in another entity. [Allotrope]

Super-properties cdao:IAO_0000136op
Inverse properties af-x:AFX_0002802op
Domain(s) af-r:AFR_0000922c

quality profile ofop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002703
Description

The relation of a process profile of some changing quality to a process. [Allotrope]

Example(s)
A pressure profile in chromatography. [Allotrope]

Super-properties cdao:BFO_0000133op
Domain(s) af-p:AFP_0003281c
Range(s) cdao:BFO_0000015c

specifiesop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002704
Description

Specifies is a relation between a specification and the object specified. [Allotrope]

Super-properties cdao:IAO_0000136op
Inverse properties af-x:AFX_0002805op
Domain(s) af-r:AFR_0000957c

has identifierop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002716
Description

The relation of an entity to an identifier that denotes it. [Allotrope]

Inverse properties af-x:AFX_0002717op

identifiesop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002717
Description

The relation of an identifier to the entity it denotes. [Allotrope]

Super-properties cdao:IAO_0000219op
Domain(s) af-r:AFR_0000917c

occurrent quantified byop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002718
Description

Occurrent quantified by relates an occurrent entity with an information content entity that is a quantification of the occurrent (duration, rate). [Allotrope]

Super-properties af-x:AFX_0002684op
Domain(s) cdao:BFO_0000003c

item ofop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002720
Description

In collection relates an item to a collection entity. [Allotrope]

Super-properties cdao:RO_0002350op
Range(s) af-c:AFC_0000166c

quality influenced byop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002722
Description

Inverse of quality influences. [Allotrope]

Super-properties cdao:RO_0002502op
Inverse properties af-x:AFX_0002723op

quality influencesop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002723
Description

Holds between qualities a and b such that if a process changes the quality to some other instance a' then for some a' it is necessary that b changes to another instance b'. [Allotrope]

Example(s)
volume influences density

Super-properties cdao:RO_0002609op
Domain(s) cdao:BFO_0000019c
Range(s) cdao:BFO_0000019c

quality strongly influencesop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002724
Description

Holds between qualities a and b such that if a process changes the quality to some other instance a' != a then for all a' it is necessary that b changes to another instance b' != b. [Allotrope]

Super-properties af-x:AFX_0002723op

quality strongly influenced byop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002725
Description

Inverse of quality strongly influences. [Allotrope]

Super-properties af-x:AFX_0002722op

contextual role ofop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002726
Description

Inverse of has contextual role. [Allotrope]

Super-properties owl:topObjectProperty
Inverse properties af-x:AFX_0002730op

lacksop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002727
Source W. Ceusters, P. Elkin, B. Smith Referent Tracking: The Problem of Negative Findings 2006
Description

Property describing the absence of a particular in relation to another particular depending on its spatio-temporal existence. [Allotrope]

Super-properties owl:topObjectProperty

facet implemented asop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002729
Description

The relation between the abstract facet and a specific information that represents the facet. [Allotrope]

Example(s)
a label facet can be implemented as a barcode or written text

Super-properties owl:topObjectProperty
Inverse properties af-x:AFX_0002807op
Domain(s) af-r:AFR_0000923c
Range(s) cdao:IAO_0000030c

has contextual roleop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002730
Description

The relation between an information object and its contextual role. [Allotrope]

Super-properties cdao:IAO_0000136op
Domain(s) cdao:IAO_0000030c
Range(s) af-rl:AFRL_0000166c

in processop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002731
Description

The relation between a conceptual role and the process where the contextual role is realized. [Allotrope]

Super-properties af-x:AFX_0000388op
Domain(s) af-rl:AFRL_0000166c
Range(s) cdao:BFO_0000015c

data output ofop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002734
Description

Inverse of 'has data output'. [Allotrope]

Super-properties af-x:AFX_0000353op
Domain(s) cdao:IAO_0000030c
Range(s) cdao:BFO_0000015c

material output ofop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002735
Description

Inverse of 'has material output'. [Allotrope]

Super-properties af-x:AFX_0000353op
Domain(s) af-m:AFM_0000275c
Range(s) cdao:BFO_0000015c

has propositionop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002736
Description

The relation between a representation and its content independent of form. [Allotrope]

Domain(s) cdao:IAO_0000030c
Range(s) af-r:AFR_0000991c

has representation formop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002737
Description

The relation between the information and the way it is represented. [Allotrope]

Domain(s) cdao:IAO_0000030c
Range(s) af-r:AFR_0000992c

has effort componentop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002740
Description

Has effort component relates an energy with its quality of effort. [Allotrope]

Domain(s) af-m:AFM_0000880c
Range(s) cdao:BFO_0000019c

has flow componentop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002741
Description

Has flow component relates an energy with its quality of flow. [Allotrope]

Domain(s) af-m:AFM_0000880c
Range(s) cdao:BFO_0000019c

has information derived fromop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002744
Description

An information content entity has information derived from some other information content entity, if there is a data processing that transforms the other into it, either transforming the representational form or the content. [Allotrope]

Domain(s) cdao:IAO_0000030c
Range(s) cdao:IAO_0000030c

affectsop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002745
Description

P has direct input c if and only if c is a participant in p, c is present at the start of p, and the state of c is modified during p, c is present at the end of p. [Allotrope]

Super-properties cdao:RO_0000057op

consumesop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002748
Description

P has output c if and only if c is a participant in p, c is present at the start of p, and c is not present at the end of p. [Allotrope]

Example(s)
An experimental step consumes a sample. [Allotrope]

Super-properties af-x:AFX_0000399op

targetsop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002750
Description

A relation between a planned process and a continuant where the continuant is a participant in the process and is the subject of the main objective of the process' plan. [Allotrope]

Example(s)
A hardness test targets the hardness quality. [Allotrope]

Super-properties cdao:RO_0000057op

has proper partop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002793
Description

Has proper part is an antisymmetric, irreflexive (normally transitive) relation between a whole and a distinct part. [SIO]

Example(s)
An atom has subatomic particles as its proper parts.

Super-properties cdao:BFO_0000051op
Inverse properties af-x:AFX_0002846op

facet ofop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002800
Description

Facet of relates two information content entities where one information content entity is an aspect of the other one. [Allotrope]

Super-properties af-x:AFX_0002846op
Inverse properties af-x:AFX_0002803op

has categorical valueop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002801
Description

Has categorical value is a facet that relates an information content entity to a code that describes a category for classification. [Allotrope]

Super-properties af-x:AFX_0002803op
Range(s) af-c:AFC_0000050c

has descriptionop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002802
Description

Has description relates an entity to an information content entity that is its description. [Allotrope]

has facetop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002803
Description

Relation between an information content entity and some part of it called a facet that is covers some general aspect of information context. [Allotrope]

Example(s)
a timestamp

an ordering

a title

Super-properties af-x:AFX_0002793op
Domain(s) cdao:IAO_0000030c
Range(s) af-r:AFR_0000923c

has specificationop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002805
Description

Has specification relates an entity to an information content entity that is its specification. [Allotrope]

classifiesop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002806
Description

The relation between a classification and something that is grouped by the classification. [Allotrope]

Super-properties cdao:IAO_0000136op
Domain(s) af-r:AFR_0000916c

implements facetop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002807
Description

Inverse of facet concretized as. [Allotrope]

Super-properties owl:topObjectProperty

quantifiesop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002816
Description

The relation of an information object to an entity that gives some indication of magnitude of a quality, information facet or process. [Allotrope]

Super-properties af-x:AFX_0002699op

index ofop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002819
Description

The relation between an index and the entity in an aggregate or list it denotes. [Allotrope]

Super-properties cdao:IAO_0000219op
Inverse properties af-x:AFX_0002820op
Domain(s) af-r:AFR_0000928c

has indexop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002820
Description

The relation between an object and an index that denotes the object within an aggregate the object is member of. [Allotrope]

Range(s) af-r:AFR_0000928c

proxy forop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002821
Description

The relation between a proxy entity and a target entity where the target entity is a real participant in some process or the subject of an information content entity but is not referenced directly, but instead the proxy is used as a surrogate or representation for it. [Allotrope]

Example(s)
An object aggregate as a proxy for a collection.

A measurement of a quality to indirectly measure another quality.

has conceptop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002822
Description

The relation an entity and an associated SKOS concept. [Allotrope]

Super-properties owl:topObjectProperty
Range(s) skos:Conceptc

has direct partop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002832
Description

A core relation that holds between a whole and a proper part without an intermediate part at a level of granularity. [Allotrope]

Super-properties af-x:AFX_0002793op
Inverse properties af-x:AFX_0002847op

is followed byop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002833
Description

Is followed by is a relation between entities that are items in an ordered sequence. For each pair of entities P, S being a member of the sequence, there exists an ordering function o so that o(P) < o(S). Iff o(P) < o(S) then P is followed by S. [Allotrope]

Super-properties af-x:AFX_0002858op
Inverse properties af-x:AFX_0002834op

followsop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002834
Description

Follows is a relation between entities that are items in an ordered sequence. For each pair of entities P, S being a member of the sequence, there exists an ordering function o so that o(P) < o(S). Iff o(S) > o(P) the S follows P. [Allotrope]

Super-properties af-x:AFX_0002858op

is immediately followed byop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002835
Description

Is immediately followed by is a relation between entities that are items in an ordered sequence. For each pair of entities P, S being a member of the sequence, there exists an ordering function o so that o(P) < o(S). Iff for members P, S of the sequence, there is no member I that o(P) < o(I) < o(S), then P is immediately followed by S. [Allotrope]

Super-properties af-x:AFX_0002833op
Inverse properties af-x:AFX_0002836op

immediately followsop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002836
Description

Immediately follows is a relation between entities that are items in an ordered sequence. For each pair of entities P, S being a member of the sequence, there exists an ordering function o so that o(P) < o(S). Iff for members P, S of the sequence, there is no member I that o(S) > o(I) > o(P), then S follows P. [Allotrope]

Super-properties af-x:AFX_0002834op

relation ofop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002837
Description

Relation of is a relation of a relational entity to the referred entities. [Allotrope]

Example(s)
A sum datum is relation of its summands.

A ratio quality is relation of two qualities of the same kind, whose magnitude is a ratio value.

Super-properties owl:topObjectProperty

relates toop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002838
Description

Relates to is a relation between a directed relational entity to the target of the relation. [Allotrope]

Example(s)
A ratio relates to the denominator.

Super-properties af-x:AFX_0002837op

relates fromop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002839
Description

Relates from is a relation between a directed relational entity to the source of the relation. [Allotrope]

Example(s)
A ratio relates from the numerator.

Super-properties af-x:AFX_0002837op

definesop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002842
Description

The relation between a definition and the entity that is defined by it. [Allotrope]

Super-properties cdao:IAO_0000136op
Inverse properties af-x:AFX_0002843op
Domain(s) af-r:AFR_0001561c

has definitionop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002843
Description

Has definition relates an entity to an information content entity that is its definition. [Allotrope]

ingredient ofop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002845
Description

Inverse of has ingredient. [Allotrope]

Super-properties af-x:AFX_0002846op

proper part ofop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002846
Description

Inverse of has proper part. [Allotrope]

Super-properties cdao:BFO_0000050op

direct part ofop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002847
Description

Inverse of has direct part. [Allotrope]

Super-properties af-x:AFX_0002846op

observesop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002848
Description

A process observing process p observes a process q if p produces information about the process q, such as the duration, or about some independent continuant participating in q in an important active or passive role. [Allotrope]

Domain(s) cdao:BFO_0000015c
Range(s) cdao:BFO_0000015c

appliesop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002849
Description

An entity applies a specification or mathematical function, if the specification specifies the entity and the entity conforms or follows the specification. [Allotrope]

Range(s) http://purl.allotrope.org/ontologies/result#AFR_0000957 http://purl.allotrope.org/ontologies/result#AFR_0001257

fulfillsop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002853
Description

A relation between a realizable entity and a requirement, that states that the process or process boundary that realizes it, satisfies all conditions of the requirement. [Allotrope]

Domain(s) cdao:BFO_0000017c
Range(s) af-r:AFR_0001872c

is log ofop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002855
Description

The relation between a log and the process the log is describing. [Allotrope]

Super-properties af-x:AFX_0002699op
Domain(s) af-r:AFR_0000900c
Range(s) cdao:BFO_0000015c

is capability ofop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002856
Description

The relation between a capability proposition and the subject it is about. [Allotrope]

Super-properties cdao:IAO_0000136op
Domain(s) af-r:AFR_0001103c

related by order toop # OPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002858
Description

A relation between entities that are ordered into a list. [Allotrope]

Super-properties owl:topObjectProperty

part ofop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000050
Super-properties cdao:RO_0002131op
Inverse properties cdao:BFO_0000051op

has partop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000051
Super-properties cdao:RO_0002131op

realized inop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000054
Super-properties owl:topObjectProperty
Inverse properties cdao:BFO_0000055op
Domain(s) cdao:BFO_0000017c
Range(s) cdao:BFO_0000015c

realizesop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000055
Super-properties owl:topObjectProperty
Domain(s) cdao:BFO_0000015c
Range(s) cdao:BFO_0000017c

preceded byop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000062
Description

X is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y if and only if ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. [RO]

Super-properties cdao:RO_0002086op
Inverse properties cdao:BFO_0000063op

precedesop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000063
Description

X precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y if and only if ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. [RO]

Super-properties cdao:RO_0002222op

occurs inop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000066
Description

b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t [RO]

Super-properties owl:topObjectProperty
Inverse properties cdao:BFO_0000067op
Domain(s) cdao:BFO_0000003c
Range(s) cdao:BFO_0000004c

contains processop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000067
Description

inverse of occurs in

Super-properties owl:topObjectProperty

located atop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000083
Description

b located at r means that r is a spatial region in which independent continuant b is exactly located. [BFO]

Domain(s) cdao:BFO_0000004c
Range(s) cdao:BFO_0000006c

exists atop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000108
Description

b exists_at t means: b is an entity which exists at some temporal region t. [BFO]

Super-properties owl:topObjectProperty
Inverse properties cdao:BFO_0000157op
Domain(s) cdao:BFO_0000001c
Range(s) cdao:BFO_0000008c

has occurrent partop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000117
Description

b has occurrent part c =Def. b has part c & b and c are occurrents.

Super-properties cdao:BFO_0000051op cdao:RO_0002222op
Inverse properties cdao:BFO_0000132op
Domain(s) cdao:BFO_0000003c
Range(s) cdao:BFO_0000003c

has proper occurrent partop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000118
Description

B has_proper_occurrent_part c =Def. b has_occurrent_part c & b and c are not identical. [BFO]

Super-properties af-x:AFX_0002793op cdao:BFO_0000117op
Inverse properties cdao:BFO_0000138op

has profileop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000119
Super-properties owl:topObjectProperty
Inverse properties cdao:BFO_0000133op
Domain(s) cdao:BFO_0000015c
Range(s) cdao:BFO_0000144c

occupies spatiotemporal regionop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000130
Description

p occupies_spatiotemporal_region s. This is a primitive relation between an occurrent p and the spatiotemporal region s which is its spatiotemporal extent. [BFO]

Super-properties owl:topObjectProperty
Domain(s) cdao:BFO_0000003c
Range(s) cdao:BFO_0000011c

part of occurrentop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000132
Description

b occurrent_part_of c =Def. b is a part of c & b and c are occurrents. [BFO]

Super-properties cdao:BFO_0000050op cdao:RO_0002222op
Domain(s) cdao:BFO_0000003c
Range(s) cdao:BFO_0000003c

process profile ofop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000133
Super-properties owl:topObjectProperty

proper part of occurrentop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000138
Description

B proper_occurrent_part_of c =Def. b occurrent_part_of c & b and c are not identical. [BFO]

Super-properties cdao:BFO_0000132op af-x:AFX_0002846op
Domain(s) cdao:BFO_0000003c
Range(s) cdao:BFO_0000003c

temporal part ofop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000139
Description

B temporal_part_of c =Def.b occurrent_part_of c & & for some temporal region t, b occupies_temporal_region t & for all occurrents d, t (if d occupies_temporal_region t & t? occurrent_part_of t then (d occurrent_part_of a iff d occurrent_part_of b)). [BFO]

Example(s)
The 4th year of your life is a temporal part of your life. [BFO]

The process boundary which separates the 3rd and 4th years of your life. [BFO]

The first quarter of a game of football is a temporal part of the whole game. [BFO]

The process of your heart beating from 4pm to 5pm today is a temporal part of the entire process of your heart beating. [BFO]

Super-properties cdao:BFO_0000132op
Domain(s) cdao:BFO_0000003c
Range(s) cdao:BFO_0000003c

during which existsop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000157
Description

inverse of exists at [BFO]

Super-properties owl:topObjectProperty
Domain(s) cdao:BFO_0000008c
Range(s) cdao:BFO_0000001c

history ofop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000184
Description

b history_of c if c is a material entity or site and b is a history that is the unique history of c

Super-properties cdao:BFO_0000066op
Domain(s) cdao:BFO_0000015c
Range(s) cdao:BFO_0000040c

has historyop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000185
Description

inverse of history of

Super-properties cdao:BFO_0000067op
Domain(s) cdao:BFO_0000040c
Range(s) cdao:BFO_0000015c

is aboutop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000136
Example(s)
This document is about information artifacts and their representations. [IAO]

Super-properties owl:topObjectProperty
Domain(s) cdao:IAO_0000030c

denotesop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000219
Description

Denotes is a primitive, instance-level, relation obtaining between an information content entity and some portion of reality. Denotation is what happens when someone creates an information content entity E in order to specifically refer to something. The only relation between E and the thing is that E can be used to 'pick out' the thing. This relation connects those two together. Freedictionary.com sense 3: To signify directly; refer to specifically [IAO]

Example(s)
A variable name in a computer program denotes some piece of memory. [IAO]

A person's name denotes the person. [IAO]

Lexically equivalent strings can denote different things, for instance "Alan" can denote different people. In each case of use, there is a case of the denotation relation obtaining, between "Alan" and the person that is being named. [IAO]

Super-properties cdao:IAO_0000136op

proxy forop # OPs

URI http://purl.obolibrary.org/obo/OBI_0000314
Description

A relation between continuant instances c1 and c2 where within a protocol application, measurement of c1 is related to a what would be the measurement of c2. [OBI]

Example(s)
position on a gel is proxy for mass and charge of molecule in an western blot [OBI]

Florescent intensity is proxy for amount of protein labeled with GFP [OBI]

Super-properties af-x:AFX_0002821op
Domain(s) cdao:BFO_0000002c
Range(s) cdao:BFO_0000002c

has grainop # OPs

URI http://purl.obolibrary.org/obo/OBI_0000643
Description

The relation of the cells in the finger of the skin to the finger, in which an indeterminate number of grains are parts of the whole by virtue of being grains in a collective that is part of the whole, and in which removing one granular part does not nec- essarily damage or diminish the whole. Ontological Whether there is a fixed, or nearly fixed number of parts - e.g. fingers of the hand, chambers of the heart, or wheels of a car - such that there can be a notion of a single one being missing, or whether, by contrast, the number of parts is indeterminate - e.g., cells in the skin of the hand, red cells in blood, or rubber molecules in the tread of the tire of the wheel of the car. [OBI]

Super-properties af-x:AFX_0002793op
Inverse properties cdao:OBI_0000645op

is grain ofop # OPs

URI http://purl.obolibrary.org/obo/OBI_0000645
Description

A relation between granular parts and the whole of which they are a part. Granular parts have indeterminate number such that removing one granular part does not necessarily damage or diminish the whole. [OBI]

Super-properties af-x:AFX_0002846op

inheres inop # OPs

URI http://purl.obolibrary.org/obo/RO_0000052
Super-properties cdao:RO_0002314op
Inverse properties cdao:RO_0000053op

bearer ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0000053
Description

A relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence. [RO]

Example(s)
this apple is bearer of this red color

this vase is bearer of this fragility

Super-properties owl:topObjectProperty
Range(s) cdao:BFO_0000020c

participates inop # OPs

URI http://purl.obolibrary.org/obo/RO_0000056
Description

A relation between a continuant and a process, in which the continuant is somehow involved in the process [RO]

Super-properties owl:topObjectProperty
Inverse properties cdao:RO_0000057op
Domain(s) cdao:BFO_0000002c
Range(s) cdao:BFO_0000003c

has participantop # OPs

URI http://purl.obolibrary.org/obo/RO_0000057
Description

A relation between a process and a continuant, in which the continuant is somehow involved in the process [RO]

Example(s)
this process has participant this input material (or this output material)

this investigation has participant this investigator

this blood coagulation has participant this blood clot

Super-properties owl:topObjectProperty
Domain(s) cdao:BFO_0000003c
Range(s) cdao:BFO_0000002c

concretized byop # OPs

URI http://purl.obolibrary.org/obo/RO_0000058
Description

A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants. [RO]

Example(s)
A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The journal article (a generically dependent continuant) is concretized as the quality (a specifically dependent continuant), and both depend on that copy of the printed journal (an independent continuant). [RO]

An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process). [RO]

Super-properties owl:topObjectProperty
Inverse properties cdao:RO_0000059op
Domain(s) cdao:BFO_0000031c
Range(s) cdao:BFO_0000020c

concretizesop # OPs

URI http://purl.obolibrary.org/obo/RO_0000059
Description

A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant. [RO]

Example(s)
A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The quality (a specifically dependent continuant) concretizes the journal article (a generically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).

An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).

Super-properties owl:topObjectProperty
Domain(s) cdao:BFO_0000020c
Range(s) cdao:BFO_0000031c

function ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0000079
Description

A relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence. [RO]

Super-properties cdao:RO_0000052op
Inverse properties cdao:RO_0000085op
Domain(s) cdao:BFO_0000034c

quality ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0000080
Description

Inverse of has quality [RO]

Super-properties cdao:RO_0000052op
Inverse properties cdao:RO_0000086op

role ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0000081
Description

A relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence. [RO]

Super-properties cdao:RO_0000052op
Inverse properties cdao:RO_0000087op

has functionop # OPs

URI http://purl.obolibrary.org/obo/RO_0000085
Description

A relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence. [RO]

Example(s)
this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)

Super-properties cdao:RO_0000053op
Domain(s) cdao:BFO_0000004c
Range(s) cdao:BFO_0000034c

has qualityop # OPs

URI http://purl.obolibrary.org/obo/RO_0000086
Description

A relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence. [RO]

Example(s)
this apple has quality this red color

Super-properties cdao:RO_0000053op
Range(s) cdao:BFO_0000019c

has roleop # OPs

URI http://purl.obolibrary.org/obo/RO_0000087
Description

A relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence [RO]

Example(s)
this person has role this investigator role (more colloquially: this person has this role of investigator) [RO]

Super-properties cdao:RO_0000053op
Domain(s) cdao:BFO_0000004c
Range(s) cdao:BFO_0000023c

has dispositionop # OPs

URI http://purl.obolibrary.org/obo/RO_0000091
Description

A relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence, [RO]

Super-properties cdao:RO_0000053op
Inverse properties cdao:RO_0000092op
Domain(s) cdao:BFO_0000004c
Range(s) cdao:BFO_0000016c

disposition ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0000092
Description

Inverse of has disposition [RO]

Super-properties cdao:RO_0000052op

derives fromop # OPs

URI http://purl.obolibrary.org/obo/RO_0001000
Description

A relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity. [RO]

Example(s)
this cell derives from this parent cell (cell division)

this nucleus derives from this parent nucleus (nuclear division)

Inverse properties cdao:RO_0001001op

derives intoop # OPs

URI http://purl.obolibrary.org/obo/RO_0001001
Description

A relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity. [RO]

location ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0001015
Description

a relation between two independent continuants, the location and the target, in which the target is entirely within the location [RO]

Example(s)
this cage is the location of this rat

Super-properties owl:topObjectProperty
Domain(s) cdao:BFO_0000004c
Range(s) cdao:BFO_0000004c

located inop # OPs

URI http://purl.obolibrary.org/obo/RO_0001025
Description

A relation between two independent continuants, the target and the location, in which the target is entirely within the location. [RO]

Super-properties owl:topObjectProperty
Domain(s) cdao:BFO_0000004c
Range(s) cdao:BFO_0000004c

2D boundary ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002000
Description

a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity [RO]

Example(s)
the surface of my skin is a 2D boundary of my body

Super-properties cdao:RO_0002323op
Inverse properties cdao:RO_0002002op

has 2D boundaryop # OPs

URI http://purl.obolibrary.org/obo/RO_0002002
Description

a relation between a material entity and a 2D immaterial entity (the boundary), in which the boundary delimits the material entity [RO]

Super-properties cdao:RO_0002323op
Domain(s) cdao:BFO_0000040c
Range(s) cdao:BFO_0000040c

occurrent part ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002012
Description

A part of relation that applies only between occurrents. [RO]

Super-properties cdao:BFO_0000050op cdao:RO_0002418op
Domain(s) cdao:BFO_0000003c
Range(s) cdao:BFO_0000003c

before or simultaneous withop # OPs

URI http://purl.obolibrary.org/obo/RO_0002081
Description

Primitive instance level timing relation between events [RO]

Super-properties cdao:RO_0002222op

simultaneous withop # OPs

URI http://purl.obolibrary.org/obo/RO_0002082
Description

t1 simultaneous_with t2 iff:= t1 before_or_simultaneous_with t2 and not (t1 before t2) [RO]

Super-properties cdao:RO_0002081op

beforeop # OPs

URI http://purl.obolibrary.org/obo/RO_0002083
Description

t1 before t2 iff:= t1 before_or_simulataneous_with t2 and not (t1 simultaneous_with t2) [RO]

Super-properties cdao:RO_0002081op

during which endsop # OPs

URI http://purl.obolibrary.org/obo/RO_0002084
Super-properties cdao:RO_0002222op
Inverse properties cdao:RO_0002093op

encompassesop # OPs

URI http://purl.obolibrary.org/obo/RO_0002085
Super-properties cdao:RO_0002088op
Inverse properties cdao:RO_0002092op

ends afterop # OPs

URI http://purl.obolibrary.org/obo/RO_0002086
Description

X ends_after Y iff: end(Y) before_or_simultaneous_with end(X) [RO]

Super-properties cdao:RO_0002222op

immediately preceded byop # OPs

URI http://purl.obolibrary.org/obo/RO_0002087
Description

X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y) [RO]

Super-properties cdao:BFO_0000062op
Inverse properties cdao:RO_0002090op

during which startsop # OPs

URI http://purl.obolibrary.org/obo/RO_0002088
Super-properties cdao:RO_0002222op
Inverse properties cdao:RO_0002091op

starts beforeop # OPs

URI http://purl.obolibrary.org/obo/RO_0002089
Super-properties cdao:RO_0002222op

immediately precedesop # OPs

URI http://purl.obolibrary.org/obo/RO_0002090
Description

X immediately_precedes_Y iff: end(X) simultaneous_with start(Y) [RO]

Super-properties cdao:BFO_0000063op

starts duringop # OPs

URI http://purl.obolibrary.org/obo/RO_0002091
Description

X starts_during Y iff: (start(Y) before_or_simultaneous_with start(X)) AND (start(X) before_or_simultaneous_with end(Y)) [RO]

Super-properties cdao:RO_0002222op

happens duringop # OPs

URI http://purl.obolibrary.org/obo/RO_0002092
Description

X happens_during Y iff: (start(Y) before_or_simultaneous_with start(X)) AND (end(X) before_or_simultaneous_with end(Y)) [RO]

Super-properties cdao:RO_0002093op

ends duringop # OPs

URI http://purl.obolibrary.org/obo/RO_0002093
Description

X ends_during Y iff: ((start(Y) before_or_simultaneous_with end(X)) AND end(X) before_or_simultaneous_with end(Y). [RO]

Super-properties cdao:RO_0002222op

overlapsop # OPs

URI http://purl.obolibrary.org/obo/RO_0002131
Description

x overlaps y if and only if there exists some z such that x has part z and z part of y [RO]

Super-properties cdao:RO_0002323op

continuous withop # OPs

URI http://purl.obolibrary.org/obo/RO_0002150
Description

X continuous_with Y if and only if X and Y share a fiat boundary. [RO]

Super-properties cdao:RO_0002323op
Domain(s) cdao:BFO_0000004c
Range(s) cdao:BFO_0000004c

spatially disjoint fromop # OPs

URI http://purl.obolibrary.org/obo/RO_0002163
Description

A is spatially_disjoint_from B if and only if they have no parts in common [RO]

Super-properties cdao:RO_0002323op

connected toop # OPs

URI http://purl.obolibrary.org/obo/RO_0002170
Description

a is connected to b if and only if a and b are discrete structure, and there exists some connecting structure c, such that c connects a and b [RO]

Super-properties cdao:RO_0002323op

connectsop # OPs

URI http://purl.obolibrary.org/obo/RO_0002176
Description

C connects a if and only if there exist some b such that a and b are similar parts of the same system, and c connects b, specifically, c connects a with b. When one structure connects two others it unites some aspect of the function or role they play within the system. [IAO]

Super-properties cdao:RO_0002323op
Domain(s) cdao:BFO_0000004c

attached to part ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002177
Description

A is attached to part of b if a is attached to b, or a is attached to some p, where p is part of b. [IAO]

Super-properties cdao:RO_0002323op
Domain(s) cdao:BFO_0000040c
Range(s) cdao:BFO_0000040c

has componentop # OPs

URI http://purl.obolibrary.org/obo/RO_0002180
Description

W 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type. [RO]

Super-properties cdao:BFO_0000051op

regulatesop # OPs

URI http://purl.obolibrary.org/obo/RO_0002211
Description

Process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2. [RO]

Super-properties cdao:RO_0002418op
Inverse properties cdao:RO_0002334op
Domain(s) cdao:BFO_0000015c
Range(s) cdao:BFO_0000015c

negatively regulates (process to process)op # OPs

URI http://purl.obolibrary.org/obo/RO_0002212
Description

Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2. [RO]

Super-properties cdao:RO_0002211op cdao:RO_0002305op

positively regulates (process to process)op # OPs

URI http://purl.obolibrary.org/obo/RO_0002213
Description

Process(P1) positively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2. [RO]

Super-properties cdao:RO_0002211op cdao:RO_0002304op

capable ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002215
Description

A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. [RO]

Example(s)
mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception [RO]

Super-properties cdao:RO_0002216op

capable of part ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002216
Description

C stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p. [RO]

Super-properties cdao:RO_0002500op cdao:RO_0002328op

actively participates inop # OPs

URI http://purl.obolibrary.org/obo/RO_0002217
Description

X actively participates in y if and only if x participates in y and x realizes some active role [RO]

Super-properties cdao:RO_0000056op
Inverse properties cdao:RO_0002218op

has active participantop # OPs

URI http://purl.obolibrary.org/obo/RO_0002218
Description

X has participant y if and only if x realizes some active role that inheres in y [RO]

Super-properties cdao:RO_0000057op

surrounded byop # OPs

URI http://purl.obolibrary.org/obo/RO_0002219
Description

X surrounded_by y if and only if (1) x is adjacent to y and for every region r that is adjacent to x, r overlaps y (2) the shared boundary between x and y occupies the majority of the outermost boundary of x [RO]

Super-properties cdao:RO_0002220op
Inverse properties cdao:RO_0002221op

adjacent toop # OPs

URI http://purl.obolibrary.org/obo/RO_0002220
Description

X adjacent to y if and only if x and y share a boundary. [RO]

Example(s)
The epidermis layer of a vertebrate is adjacent to the dermis.

The plasma membrane of a cell is adjacent to the cytoplasm, and also to the cell lumen which the cytoplasm occupies.

The skin of the forelimb is adjacent to the skin of the torso if these are considered anatomical subdivisions with a defined border. Otherwise a relation such as continuous_with would be used.

A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts.

Super-properties cdao:RO_0002163op

surroundsop # OPs

URI http://purl.obolibrary.org/obo/RO_0002221
Description

Inverse of surrounded by [RO]

Super-properties cdao:RO_0002220op

temporally related toop # OPs

URI http://purl.obolibrary.org/obo/RO_0002222
Description

A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. [RO]

Super-properties owl:topObjectProperty
Domain(s) cdao:BFO_0000003c
Range(s) cdao:BFO_0000003c

startsop # OPs

URI http://purl.obolibrary.org/obo/RO_0002223
Description

Inverse of starts with [RO]

Super-properties cdao:BFO_0000050op cdao:RO_0002222op
Inverse properties cdao:RO_0002224op

starts withop # OPs

URI http://purl.obolibrary.org/obo/RO_0002224
Description

X starts with y if and only if x has part y and the time point at which x starts is equivalent to the time point at which y starts. Formally: α(y) = α(x) and ω(y) < ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. [RO]

Super-properties cdao:BFO_0000051op cdao:RO_0002222op

endsop # OPs

URI http://purl.obolibrary.org/obo/RO_0002229
Description

Inverse of ends with [RO]

Super-properties cdao:BFO_0000050op cdao:RO_0002222op
Inverse properties cdao:RO_0002230op

ends withop # OPs

URI http://purl.obolibrary.org/obo/RO_0002230
Description

X ends with y if and only if x has part y and the time point at which x ends is equivalent to the time point at which y ends. Formally: α(y) > α(x) and ω(y) = ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. [RO]

Super-properties cdao:RO_0002222op cdao:BFO_0000051op

acts upstream ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002263
Description

C involved in regulation of p if c enables 'p' and p' causally upstream of p [RO]

Super-properties cdao:RO_0002264op

acts upstream of or withinop # OPs

URI http://purl.obolibrary.org/obo/RO_0002264
Description

C acts upstream of or within p if c is enables 'p' and p' causally upstream of or within p [RO]

Super-properties cdao:RO_0002500op

causally upstream of, positive effectop # OPs

URI http://purl.obolibrary.org/obo/RO_0002304
Super-properties cdao:RO_0002411op

causally upstream of, negative effectop # OPs

URI http://purl.obolibrary.org/obo/RO_0002305
Description

holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y [RO]

Super-properties cdao:RO_0002411op

inheres in part ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002314
Description

Q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w. [RO]

Super-properties cdao:RO_0002502op

mereotopologically related toop # OPs

URI http://purl.obolibrary.org/obo/RO_0002323
Description

A mereological relationship or a topological relationship [RO]

Super-properties owl:topObjectProperty

contributes toop # OPs

URI http://purl.obolibrary.org/obo/RO_0002326
Description

if and only if exists c', p' c part_of c' and c' capable_of p and c capable_of p' and p' part_of p then c contributes_to p [RO]

Super-properties cdao:RO_0002216op

enablesop # OPs

URI http://purl.obolibrary.org/obo/RO_0002327
Example(s)
a particular instances of akt-2 enables some instance of protein kinase activity [RO]

Super-properties cdao:RO_0002215op
Inverse properties cdao:RO_0002333op

functionally related toop # OPs

URI http://purl.obolibrary.org/obo/RO_0002328
Description

This is a grouping relation that collects relations used for the purpose of connecting structure and function. [RO]

Super-properties owl:topObjectProperty

involved inop # OPs

URI http://purl.obolibrary.org/obo/RO_0002331
Description

C involved_in p if and only if c enables some process p', and p' is part of p [RO]

Super-properties cdao:RO_0002431op

regulates levels of (process to entity)op # OPs

URI http://purl.obolibrary.org/obo/RO_0002332
Description

P regulates levels of c if p regulates some amount (PATO:0000070) of c [RO]

Example(s)
every cellular sphingolipid homeostasis process regulates_level_of some sphingolipid

Super-properties cdao:RO_0000057op

enabled byop # OPs

URI http://purl.obolibrary.org/obo/RO_0002333
Description

inverse of enables [RO]

Super-properties cdao:RO_0002328op

regulated byop # OPs

URI http://purl.obolibrary.org/obo/RO_0002334
Super-properties cdao:RO_0002427op
Domain(s) cdao:BFO_0000015c
Range(s) cdao:BFO_0000015c

negatively regulated byop # OPs

URI http://purl.obolibrary.org/obo/RO_0002335
Description

Inverse of negatively regulates [RO]

Super-properties cdao:RO_0002334op

positively regulated byop # OPs

URI http://purl.obolibrary.org/obo/RO_0002336
Description

Inverse of positively regulates [RO]

Super-properties cdao:RO_0002334op

related via localization toop # OPs

URI http://purl.obolibrary.org/obo/RO_0002337
Description

A relationship that holds via some process of localization. [RO]

Super-properties owl:topObjectProperty

has target start locationop # OPs

URI http://purl.obolibrary.org/obo/RO_0002338
Description

This relationship holds between p and l when p is a transport or localization process in which the outcome is to move some cargo c from some initial location l to some destination. [RO]

Super-properties cdao:RO_0002344op

has target end locationop # OPs

URI http://purl.obolibrary.org/obo/RO_0002339
Description

This relationship holds between p and l when p is a transport or localization process in which the outcome is to move some cargo c from a an initial location to some destination l. [RO]

Super-properties cdao:RO_0002344op

results in transport alongop # OPs

URI http://purl.obolibrary.org/obo/RO_0002341
Description

Holds between p and l when p is a transportation or localization process and the outcome of this process is to move c from one location to another, and the route taken by c follows a path that is aligned_with l. [RO]

Super-properties cdao:RO_0002337op

results in transport acrossop # OPs

URI http://purl.obolibrary.org/obo/RO_0002342
Description

Holds between p and m when p is a transportation or localization process and the outcome of this process is to move c from one location to another, and the route taken by c follows a path that crosses m. [RO]

Super-properties cdao:RO_0002344op

results in transport to from or inop # OPs

URI http://purl.obolibrary.org/obo/RO_0002344
Example(s)
'mitochondrial transport' results_in_transport_to_from_or_in some  mitochondrion (GO:0005739)

Super-properties cdao:RO_0002337op

member ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002350
Description

Inverse of has member

Example(s)
An organism that is a member of a population of organisms. [RO]

Super-properties af-x:AFX_0002846op
Inverse properties cdao:RO_0002351op

has memberop # OPs

URI http://purl.obolibrary.org/obo/RO_0002351
Description

Has member is a mereological relation between a collection and an item. [RO]

Super-properties af-x:AFX_0002793op

attached toop # OPs

URI http://purl.obolibrary.org/obo/RO_0002371
Description

A is attached to b if and only if a and b are discrete objects or object parts, and there are physical connections between a and b such that a force pulling a will move b, or a force pulling b will move a. [IAO]

Super-properties cdao:RO_0002177op cdao:RO_0002170op

spatially coextensive withop # OPs

URI http://purl.obolibrary.org/obo/RO_0002379
Description

X spatially_coextensive_with y if and only if x and y have the same location [RO]

Example(s)
A lump of clay and a statue

Super-properties cdao:RO_0002131op

causally downstream ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002404
Description

inverse of upstream of [RO]

Super-properties cdao:BFO_0000062op cdao:RO_0002427op
Inverse properties cdao:RO_0002411op

immediately causally downstream ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002405
Description

inverse of immediately causally upstream of

Super-properties cdao:RO_0002087op cdao:RO_0002404op
Inverse properties cdao:RO_0002412op

causally related toop # OPs

URI http://purl.obolibrary.org/obo/RO_0002410
Super-properties cdao:RO_0002609op

causally upstream ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002411
Description

P is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain [RO]

Super-properties cdao:BFO_0000063op cdao:RO_0002418op

immediately causally upstream ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002412
Description

P is immediately causally upstream of q if and only if both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q. [RO]

Super-properties cdao:RO_0002411op cdao:RO_0002090op

causally upstream of or withinop # OPs

URI http://purl.obolibrary.org/obo/RO_0002418
Description

P 'causally upstream or within' q if and only if (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q. [RO]

Super-properties cdao:RO_0002501op
Inverse properties cdao:RO_0002427op

causally downstream of or withinop # OPs

URI http://purl.obolibrary.org/obo/RO_0002427
Super-properties cdao:RO_0002501op

involved in regulation ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002428
Description

C involved in regulation of p if c is involved in some 'p' and p' regulates some p [RO]

Super-properties cdao:RO_0002263op cdao:RO_0002431op

involved in positive regulation ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002429
Super-properties cdao:RO_0002428op

involved in negative regulation ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002430
Super-properties cdao:RO_0002428op

involved in or involved in regulation ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002431
Description

C involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p [RO]

Super-properties cdao:RO_0002328op cdao:RO_0002500op cdao:RO_0002264op

interacts withop # OPs

URI http://purl.obolibrary.org/obo/RO_0002434
Description

A relationship that holds between two entities in which the processes executed by the two entities are causally connected. [RO]

Super-properties owl:topObjectProperty
Domain(s) cdao:BFO_0000040c
Range(s) cdao:BFO_0000040c

partner inop # OPs

URI http://purl.obolibrary.org/obo/RO_0002461
Description

relation used for defining interaction relations. An interaction relation holds when there is an interaction event with two partners. In a directional interaction, one partner is deemed the subject, the other the target [RO]

Super-properties cdao:RO_0000056op

subject participant inop # OPs

URI http://purl.obolibrary.org/obo/RO_0002462
Description

relation used for defining interaction relations; the meaning of s 'subject participant in' p is determined by the type of p, where p must be a directional interaction process. [RO]

Example(s)
in a predator-prey interaction process the subject is the predator

Super-properties cdao:RO_0002461op

target participant inop # OPs

URI http://purl.obolibrary.org/obo/RO_0002463
Description

Relation used for defining interaction relations; the meaning of s 'target participant in' p is determined by the type of p, where p must be a directional interaction process [RO]

Example(s)
in a predator-prey interaction process the target is the prey

Super-properties cdao:RO_0002461op

causal agent in processop # OPs

URI http://purl.obolibrary.org/obo/RO_0002500
Description

A relationship between a material entity and a process where the material entity has some causal role that influences the process. [RO]

Super-properties cdao:RO_0002595op

causal relation between processesop # OPs

URI http://purl.obolibrary.org/obo/RO_0002501
Description

P is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q. [RO]

Super-properties cdao:RO_0002410op
Domain(s) cdao:BFO_0000003c
Range(s) cdao:BFO_0000003c

depends onop # OPs

URI http://purl.obolibrary.org/obo/RO_0002502
Description

Being determined, based or contingent on something. [Allotrope]

Super-properties owl:topObjectProperty

towardsop # OPs

URI http://purl.obolibrary.org/obo/RO_0002503
Description

Q towards e2 if and only if q is a relational quality such that q inheres-in some e, and e != e2 and q is dependent on e2 [RO]

Super-properties cdao:RO_0002502op

has intermediateop # OPs

URI http://purl.obolibrary.org/obo/RO_0002505
Description

P has intermediate c if and only if p has parts p1, p2 and p1 has output c, and p2 has input c [RO]

Super-properties cdao:RO_0000057op

causal relation between material entitiesop # OPs

URI http://purl.obolibrary.org/obo/RO_0002506
Super-properties cdao:RO_0002410op
Domain(s) cdao:BFO_0000040c
Range(s) cdao:BFO_0000040c

determined by (system to material entity)op # OPs

URI http://purl.obolibrary.org/obo/RO_0002507
Description

S determined by f if and only if s is a type of system, and f is a material entity that is part of s, such that f exerts a strong causal influence on the functioning of s, and the removal of f would cause the collapse of s. [RO]

Super-properties cdao:RO_0002509op cdao:RO_0002559op cdao:BFO_0000050op
Inverse properties cdao:RO_0002508op
Domain(s) cdao:RO_0002577c
Range(s) cdao:BFO_0000040c

determines (material entity to system)op # OPs

URI http://purl.obolibrary.org/obo/RO_0002508
Super-properties cdao:RO_0002566op

determined by part ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002509
Description

S 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w. [RO]

Super-properties cdao:RO_0002506op cdao:RO_0002131op
Domain(s) cdao:RO_0002577c
Range(s) cdao:BFO_0000040c

sequentially related toop # OPs

URI http://purl.obolibrary.org/obo/RO_0002514
Description

A relation that holds between two entities that have the property of being sequences or having sequences. [RO]

sequentially adjacent toop # OPs

URI http://purl.obolibrary.org/obo/RO_0002515
Description

x is sequentially adjacent to y if and only if x and y do not overlap and if there are no base units intervening between x and y [RO]

Super-properties cdao:RO_0002527op

has start sequenceop # OPs

URI http://purl.obolibrary.org/obo/RO_0002516
Description

x has start sequence y if the start of x is identical to the start of y, and x has y as a subsequence [RO]

Super-properties cdao:RO_0002524op
Inverse properties cdao:RO_0002517op

is start sequence ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002517
Description

inverse of has start sequence [RO]

Super-properties cdao:RO_0002524op

has end sequenceop # OPs

URI http://purl.obolibrary.org/obo/RO_0002518
Description

x has end sequence y if the end of x is identical to the end of y, and x has y as a subsequence [RO]

Super-properties cdao:RO_0002524op
Inverse properties cdao:RO_0002519op

is end sequence ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002519
Description

inverse of has end sequence [RO]

Super-properties cdao:RO_0002525op

bounds sequence ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002522
Description

x bounds the sequence of y if and only if the upstream-most part of x is upstream of or coincident with the upstream-most part of y, and the downstream-most part of x is downstream of or coincident with the downstream-most part of y [RO]

Super-properties cdao:RO_0002514op
Inverse properties cdao:RO_0002523op

is bound by sequence ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002523
Description

inverse of bounds sequence of [RO]

Super-properties cdao:RO_0002514op

has subsequenceop # OPs

URI http://purl.obolibrary.org/obo/RO_0002524
Description

x has subsequence y if and only if all of the sequence parts of x are sequence parts of y [RO]

Super-properties cdao:RO_0002526op cdao:BFO_0000051op cdao:RO_0002522op
Inverse properties cdao:RO_0002525op

is subsequence ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002525
Description

inverse of has subsequence [RO]

Super-properties cdao:RO_0002526op cdao:BFO_0000050op cdao:RO_0002523op

overlaps sequence ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002526
Description

x overlaps the sequence of x if and only if x has a subsequence z and z is a subsequence of y. [RO]

Super-properties cdao:RO_0002131op cdao:RO_0002514op

does not overlap sequence ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002527
Description

x does not overlaps the sequence of x if and only if there is no z such that x has a subsequence z and z is a subsequence of y. [RO]

Super-properties cdao:RO_0002514op

is upstream sequence ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002528
Description

inverse of downstream sequence of [RO]

Super-properties cdao:RO_0002527op
Inverse properties cdao:RO_0002529op

is downstream of sequence ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002529
Description

x is downstream of the sequence of y if and only if either (1) x and y have sequence units, and all units of x are downstream of all units of y, or (2) x and y are sequence units, and x is either immediately downstream of y, or transitively downstream of y. [RO]

Super-properties cdao:RO_0002527op

is immediately downstream of sequence ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002530
Description

x is immediately downstream of the sequence of y if and only if either (1) x and y have sequence units, and all units of x are downstream of all units of y, and x is sequentially adjacent to y, or (2) x and y are sequence units, in which case the immediately downstream relation is primitive and defined by context: for DNA bases, y would be adjacent and 5' to y [RO]

Super-properties cdao:RO_0002529op cdao:RO_0002515op
Inverse properties cdao:RO_0002531op

is immediately upstream sequence ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002531
Description

inverse of immediately downstream of [RO]

Super-properties cdao:RO_0002528op cdao:RO_0002515op

causally influenced by (material entity to material entity)op # OPs

URI http://purl.obolibrary.org/obo/RO_0002559
Super-properties cdao:RO_0002506op
Inverse properties cdao:RO_0002566op

causally influences (material entity to material entity)op # OPs

URI http://purl.obolibrary.org/obo/RO_0002566
Description

Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b [RO]

Super-properties cdao:RO_0002506op

conduit forop # OPs

URI http://purl.obolibrary.org/obo/RO_0002570
Description

X is a conduit for y if and only if y overlaps through the lumen_of of x, and y has parts on either side of the lumen of x. [RO]

Super-properties cdao:RO_0002131op
Domain(s) cdao:BFO_0000040c
Range(s) cdao:BFO_0000040c

has part structure that is capable ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002584
Description

S 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p [RO]

Super-properties cdao:RO_0002328op cdao:RO_0002595op

causal relation between material entity and a processop # OPs

URI http://purl.obolibrary.org/obo/RO_0002595
Description

A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity. [RO]

Super-properties cdao:RO_0002410op
Domain(s) cdao:BFO_0000040c
Range(s) cdao:BFO_0000015c

is marker forop # OPs

URI http://purl.obolibrary.org/obo/RO_0002607
Description

C is marker for d if and only if the presence or occurrence of d is correlated with the presence of occurrence of c, and the observation of c is used to infer the presence or occurrence of d. Note that this does not imply that c and d are in a direct causal relationship, as it may be the case that there is a third entity e that stands in a direct causal relationship with c and d. [RO]

Super-properties cdao:RO_0002610op

related via dependence toop # OPs

URI http://purl.obolibrary.org/obo/RO_0002609
Description

A relationship that holds between two entities, where the relationship holds based on the presence or absence of statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes. [RO]

correlated withop # OPs

URI http://purl.obolibrary.org/obo/RO_0002610
Description

A relationship that holds between two entities, where the entities exhibit a statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes. [RO]

Super-properties cdao:RO_0002609op

producesop # OPs

URI http://purl.obolibrary.org/obo/RO_0003000
Description

a produces b if some process that occurs_in a has_output b, where a and b are material entities. [RO]

Example(s)
chondroblast produces avascular GAG-rich matrix

hybridoma cell line produces monoclonal antibody reagent

Super-properties owl:topObjectProperty
Inverse properties cdao:RO_0003001op
Domain(s) cdao:BFO_0000040c
Range(s) cdao:BFO_0000040c

produced byop # OPs

URI http://purl.obolibrary.org/obo/RO_0003001
Description

inverse of produces

Super-properties owl:topObjectProperty
Domain(s) cdao:BFO_0000040c
Range(s) cdao:BFO_0000040c

causes or contributes to conditionop # OPs

URI http://purl.obolibrary.org/obo/RO_0003302
Description

A relationship between an entity (e.g. a genotype, genetic variation, chemical, or environmental exposure) and a condition (a phenotype or disease), where the entity has some causal or contributing role that influences the condition. [RO]

Super-properties cdao:RO_0002410op

causes conditionop # OPs

URI http://purl.obolibrary.org/obo/RO_0003303
Description

A relationship between an entity (e.g. a genotype, genetic variation, chemical, or environmental exposure) and a condition (a phenotype or disease), where the entity has some causal role for the condition. [RO]

Super-properties cdao:RO_0003302op

contributes to conditionop # OPs

URI http://purl.obolibrary.org/obo/RO_0003304
Description

A relationship between an entity (e.g. a genotype, genetic variation, chemical, or environmental exposure) and a condition (a phenotype or disease), where the entity has some contributing role that influences the condition. [RO]

Super-properties cdao:RO_0003302op

has quantity kindop # OPs

URI http://qudt.org/schema/qudt#quantityKind
Range(s) qudt:QuantityKindc

quantity valueop # OPs

URI http://qudt.org/schema/qudt#quantityValue

unitop # OPs

URI http://qudt.org/schema/qudt#unit
Range(s) qudt:Unitc

Datatype Properties

countdp # DPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000604
Description

The number of objects counted. [Allotrope]

minimum valuedp # DPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000670
Description

The lowest value of a range of literals. [Allotrope]

minimum value exclusivedp # DPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000671
Description

The lowest value of a range excluding the boundary value. [Allotrope]

Super-properties af-x:AFX_0000670dp

minimum value inclusivedp # DPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000672
Description

The lowest value of a range including the boundary value. [Allotrope]

Super-properties af-x:AFX_0000670dp

maximum valuedp # DPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000674
Description

The highest value of a range of literals. [Allotrope]

maximum value exclusivedp # DPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000675
Description

The highest value of a range excluding the boundary value. [Allotrope]

Super-properties af-x:AFX_0000674dp

maximum value inclusivedp # DPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000676
Description

The highest value of a range including the boundary value. [Allotrope]

Super-properties af-x:AFX_0000674dp

is validdp # DPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000678
Description

The property flags an information as correct and without errors. [Allotrope]

indexdp # DPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000684
Description

Position in an ordered list. [Allotrope]

increment valuedp # DPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000685
Description

The difference between two discrete points next to each other in a range of discrete values. [Allotrope]

Example(s)
A device property can be set between a minimum and maximum value but only in steps of the increment value.

has valuedp # DPs

URI http://purl.allotrope.org/ontologies/property#AFX_0000690
Description

The literal piece of information as part of some information entity object. [Allotrope]

collection sizedp # DPs

URI http://purl.allotrope.org/ontologies/property#AFX_0001198
Description

The collection size is the number of entries in a collection. [Allotrope]

Super-properties af-x:AFX_0000604dp
Domain(s) af-c:AFC_0000166c

reference valuedp # DPs

URI http://purl.allotrope.org/ontologies/property#AFX_0001732
Description

A value that used as a basis for comparison. [Allotrope]

Super-properties af-x:AFX_0000690dp

tensor rankdp # DPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002705
Description

Tensor rank is the total number of indices required to identify each component of a tensor uniquely. It is equal to the dimension of the tensor. [Wikipedia]

Domain(s) af-r:AFR_0000958c

index 1dp # DPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002742
Description

The second index value in a multi-dimensional datum. [Allotrope]

index 0dp # DPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002743
Description

The first index value in a multi-dimensional datum. [Allotrope]

minimum error exclusivedp # DPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002861
Is Defined By Minimum error exclusive is the absolute error amount (exclusive) by which the actual value could be lower than the stated value.
Super-properties af-x:AFX_0000671dp

maximum error exclusivedp # DPs

URI http://purl.allotrope.org/ontologies/property#AFX_0002862
Is Defined By Maximum error exclusive is the absolute error amount (exclusive) by which the actual value could be higher than the stated value.
Super-properties af-x:AFX_0000675dp

numeric valuedp # DPs

URI http://qudt.org/schema/qudt#numericValue
Range(s) xsd:doublec

relative standard uncertaintydp # DPs

URI http://qudt.org/schema/qudt#relativeStandardUncertainty
Description

The relative standard uncertainty of a measurement is the (absolute) standard uncertainty divided by the magnitude of the exact value. [QUDT]

Range(s) xsd:doublec

standard uncertaintydp # DPs

URI http://qudt.org/schema/qudt#standardUncertainty
Description

The standard uncertainty of a quantity is the estimated standard deviation of the mean taken from a series of measurements. [QUDT]

Range(s) xsd:doublec

symboldp # DPs

URI http://qudt.org/schema/qudt#symbol
Description

The symbol for a unit is a glyph that is used to represent the unit in a compact form. [QUDT]

Example(s)
For example, the symbol for the US Dollar is $. This contrasts with unit:abbreviation, which gives a short alphanumeric abbreviation for the unit. (I.e. USD for US Dollar). [QUDT]

Range(s) xsd:stringc

notationdp # DPs

URI http://www.w3.org/2004/02/skos/core#notation
Is Defined By http://www.w3.org/2004/02/skos/core
Description

A notation, also known as classification code, is a string of characters such as "T58.5" or "303.4833" used to uniquely identify a concept within the scope of a given concept scheme.

Scope Notes

By convention, skos:notation is used with a typed literal in the object position of the triple.

namedp # DPs

URI http://xmlns.com/foaf/0.1/name

Annotation Properties

has propertyap # APs

URI http://purl.allotrope.org/ontologies/property#AFX_0001144
Description

A reference to an object or datatype property. [Allotrope]

has classap # APs

URI http://purl.allotrope.org/ontologies/property#AFX_0001166
Description

A relation to a class of individuals. [Allotrope]

Range(s) rdfs:Classc

has coordinationap # APs

URI http://purl.allotrope.org/ontologies/property#AFX_0002841
Description

Has coordination annotates a class with some defining differentia. [Allotrope]

Named Individuals

Derivative works attributionni

URI http://purl.allotrope.org/voc/attribution
Description These taxonomies contain material or may constitute derivative works of material which may be subject to copyright by one of the following organizations. By using these taxonomies, you agree to the following terms and conditions applicable to its contents: ****************************************************************************** Attribution Notice for National Center for Biomedical Ontology materials. This work contains material from the Cell Ontology and Clinical Measurement Ontology, available here: http://bioportal.bioontology.org/. ****************************************************************************** Attribution Notice for ChEBI This work contains material from the European Bioinformatics Institute’s ChEBI database. ****************************************************************************** Attribution Notice for Quantities Units Dimensions Data Types (http://www.qudt.org/) This work contains content from www.qudt.org and is used pursuant to a Creative Commons License available here: http://creativecommons.org/licenses/by-sa/3.0/us/legalcode. The original work may have been modified. ****************************************************************************** Copyright and Attribution Notice for Dublin Core Metadata Initiative Document This work contains material from the following DCMI document used pursuant to a creative commons license available here: https://creativecommons.org/licenses/by/4.0/legalcode. This material may have been modified or changed. Timestamped URL: http://dublincore.org/documents/2012/06/14/dcmi-terms/ Date Issued: 2012-06-14 Document Status: This is a DCMI Recommendation. Copyright © 1995-2015 DCMI. All Rights Reserved. DCMI liability, trademark/service mark, document use and software licensing rules apply. ******************************************************************************

Copyright © 2015-2020 Allotrope Foundationni

URI http://purl.allotrope.org/voc/copyright
Description Copyright © 2015-2020 Allotrope Foundation

Creative Commons Attribution 4.0 International Public Licenseni

URI http://purl.allotrope.org/voc/creative-commons-attribution-license
Description This work is licensed under a Creative Commons Attribution 4.0 International License http://creativecommons.org/licenses/by/4.0/. THESE MATERIALS ARE PROVIDED "AS IS" AND ALLOTROPE EXPRESSLY DISCLAIMS ALL WARRANTIES, EXPRESS, IMPLIED OR STATUTORY, INCLUDING, WITHOUT LIMITATION, THE WARRANTIES OF NON-INFRINGEMENT, TITLE, MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. Copyright © 2015-2020 Allotrope Foundation

Noneni

Class(es)
foaf:Organization
URI http://www.allotrope.org

Namespaces

default (:)
http://purl.allotrope.org/voc/afo/REC/2020/09/relation
af-c
http://purl.allotrope.org/ontologies/common#
af-cur
http://purl.allotrope.org/ontologies/curation#
af-e
http://purl.allotrope.org/ontologies/equipment#
af-m
http://purl.allotrope.org/ontologies/material#
af-p
http://purl.allotrope.org/ontologies/process#
af-q
http://purl.allotrope.org/ontologies/quality#
af-r
http://purl.allotrope.org/ontologies/result#
af-rl
http://purl.allotrope.org/ontologies/role#
af-x
http://purl.allotrope.org/ontologies/property#
bfo
http://purl.obolibrary.org/obo/BFO
cdao
http://purl.obolibrary.org/obo/
chmo
http://purl.obolibrary.org/obo/CHMO
cl
http://purl.obolibrary.org/obo/CL
dc
http://purl.org/dc/elements/1.1/
dct
http://purl.org/dc/terms/
doap
http://usefulinc.com/ns/doap#
foaf
http://xmlns.com/foaf/0.1/
go
http://purl.obolibrary.org/obo/GO
iao
http://purl.obolibrary.org/obo/IAO
obi
http://purl.obolibrary.org/obo/OBI
owl
http://www.w3.org/2002/07/owl#
pav
http://purl.org/pav/
prov
http://www.w3.org/ns/prov#
qudt
http://qudt.org/schema/qudt#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
ro
http://purl.obolibrary.org/obo/RO
sdo
https://schema.org/
sio
http://semanticscience.org/resource/
skos
http://www.w3.org/2004/02/skos/core#
time
http://www.w3.org/2006/time#
xsd
http://www.w3.org/2001/XMLSchema#

Legend

cClasses
opObject Properties
fpFunctional Properties
dpData Properties
dpAnnotation Properties
pProperties
niNamed Individuals