AFO Detection Domain Ontology (REC/2021/06)

Classes ↑

detection wavelength^c # Classes

URI	`http://purl.allotrope.org/ontologies/quality#AFQ_0000029`
Description	A detection wavelength quality is a device setting which determines the wavelength range that a detector of electromagnetic radiation detects. [Allotrope]
Super-classes	af-q:AFQ_0000199^c
Restrictions	cdao:RO_0000080 some af-e:AFE_0000317^c
Sub-classes	af-q:AFQ_0000197^c

electronic absorbance detection wavelength^c # Classes

URI	`http://purl.allotrope.org/ontologies/quality#AFQ_0000197`
Description	The electronic absorbance detection wavelength is the detection wavelength setting of an electronic absorbance detector. [Allotrope]
Super-classes	af-q:AFQ_0000029^c

detection bandwidth^c # Classes

URI	`http://purl.allotrope.org/ontologies/quality#AFQ_0000198`
Description	Detection bandwidth is a device setting of a detector controlling the bandwidth of the detection wavelength. [Allotrope]
Super-classes	af-q:AFQ_0000199^c

detector configuration^c # Classes

URI	`http://purl.allotrope.org/ontologies/quality#AFQ_0000199`
Description	A detector configuration is a device configuration of a detector. [Allotrope]
Super-classes	af-q:AFQ_0000036^c
Restrictions	cdao:RO_0000080 some af-e:AFE_0000317^c
Sub-classes	af-q:AFQ_0000293^c af-q:AFQ_0000029^c af-q:AFQ_0000198^c

detector gain^c # Classes

URI	`http://purl.allotrope.org/ontologies/quality#AFQ_0000293`
Description	The detector gain is a (relative) amount by which a detector to increases the magnitude of a signal from the input to the output port by adding energy to the signal. [Allotrope]
Super-classes	af-q:AFQ_0000199^c af-q:AFQ_0000297^c

detector setting^c # Classes

URI	`http://purl.allotrope.org/ontologies/result#AFR_0001247`
Description	A detector setting is a setting that specifies a detector configuration. [Allotrope]
Super-classes	af-r:AFR_0001505^c
Restrictions	af-x:AFX_0002704 some af-q:AFQ_0000199^c
Sub-classes	af-r:AFR_0001248^c af-r:AFR_0001249^c af-r:AFR_0002477^c af-r:AFR_0001542^c af-r:AFR_0002456^c af-r:AFR_0002250^c af-r:AFR_0001957^c af-r:AFR_0001250^c af-r:AFR_0002478^c af-r:AFR_0001648^c

electronic absorbance detector setting^c # Classes

URI	`http://purl.allotrope.org/ontologies/result#AFR_0001248`
Description	An electronic absorbance detector setting is a setting that specifies a device configuration of an electronic absorbance detector. [Allotrope]
Super-classes	af-r:AFR_0001247^c
Sub-classes	af-r:AFR_0001254^c af-r:AFR_0001251^c af-r:AFR_0001252^c af-r:AFR_0001253^c

detector offset setting^c # Classes

URI	`http://purl.allotrope.org/ontologies/result#AFR_0001249`
Description	A detector offset setting is a detector setting parameter that adds the specified value to its output signal. It is often used to avoid negative signal values. [Allotrope]
Super-classes	af-r:AFR_0001247^c af-r:AFR_0001243^c

detector sampling rate setting^c # Classes

URI	`http://purl.allotrope.org/ontologies/result#AFR_0001250`
Description	A detector sampling rate setting is a detector setting parameter that specifies the rate at which the detector changes its output signal. It is limited by the actual physical/chemical process of detection and the detector electronics. Often the sample rate is set lower than the maximum sampling rate so that adjacent data points can be averaged to provide better signal to noise. [Allotrope]
Super-classes	af-r:AFR_0001243^c af-r:AFR_0001247^c

electronic absorbance reference bandwidth setting^c # Classes

URI	`http://purl.allotrope.org/ontologies/result#AFR_0001251`
Description	An electronic absorbance reference bandwidth setting is an electronic absorbance detector setting parameter that specifies the bandwidth of the reference signal that is subtracted from a particular signal of the device in order to compensate for background signal and noise. [Allotrope]
Super-classes	af-r:AFR_0001243^c af-r:AFR_0001248^c

electronic absorbance reference wavelength setting^c # Classes

URI	`http://purl.allotrope.org/ontologies/result#AFR_0001252`
Description	An electronic absorbance reference wavelength setting is an electronic absorbance detector setting parameter that specifies the nominal reference wavelength of the reference signal that is subtracted from a particular signal of the device in order to compensate for background signal and noise. [Allotrope]
Super-classes	af-r:AFR_0001243^c af-r:AFR_0001248^c

electronic absorbance bandwidth setting^c # Classes

URI	`http://purl.allotrope.org/ontologies/result#AFR_0001253`
Description	An electronic absorbance bandwidth setting is an electronic absorbance detector setting parameter that specifies the bandwidth of a particular signal to be measured by the device. [Allotrope]
Super-classes	af-r:AFR_0002477^c af-r:AFR_0001248^c

electronic absorbance wavelength setting^c # Classes

URI	`http://purl.allotrope.org/ontologies/result#AFR_0001254`
Description	An electronic absorbance wavelength setting that is an electronic absorbance detector setting parameter that specifies the nominal wavelength of a particular signal to be measured by the device. [Allotrope]
Super-classes	af-r:AFR_0002456^c af-r:AFR_0001248^c

detector scan range setting^c # Classes

URI	`http://purl.allotrope.org/ontologies/result#AFR_0001542`
Description	A detector scan range setting is a detector setting that sets the wavelength range of scans as well as the increment between different scans. [Allotrope]
Example(s)	A scan range from 280 to 700 nm with an increment of 2 nm from one scan to the next.
Super-classes	af-r:AFR_0001243^c af-r:AFR_0001247^c

detection duration setting^c # Classes

URI	`http://purl.allotrope.org/ontologies/result#AFR_0001648`
Description	A detection duration setting is a setting specifies the total duration of a detection process. [Allotrope]
Super-classes	af-r:AFR_0001243^c af-r:AFR_0001247^c

detector scan rate setting^c # Classes

URI	`http://purl.allotrope.org/ontologies/result#AFR_0001957`
Description	A detector setting that sets the frequency of scans per time unit. [Allotrope]
Super-classes	af-r:AFR_0001243^c af-r:AFR_0001247^c

detector gain setting^c # Classes

URI	`http://purl.allotrope.org/ontologies/result#AFR_0002250`
Description	A detector gain setting is setting that specifies the gain of the detector. [Allotrope]
Super-classes	af-r:AFR_0001247^c af-r:AFR_0001243^c

detector wavelength setting^c # Classes

URI	`http://purl.allotrope.org/ontologies/result#AFR_0002456`
Description	A detector wavelength setting is a control setting that specifies the wavelength of a particular signal to be measured by the detector. [Allotrope]
Super-classes	af-r:AFR_0001247^c af-r:AFR_0001243^c
Sub-classes	af-r:AFR_0001254^c

detector bandwidth setting^c # Classes

URI	`http://purl.allotrope.org/ontologies/result#AFR_0002477`
Description	A detector bandwidth setting is a control setting that specifies the bandwidth of a particular signal to be measured by the detector. [Allotrope]
Super-classes	af-r:AFR_0001247^c af-r:AFR_0001243^c
Sub-classes	af-r:AFR_0001253^c

wavelength filter cutoff setting^c # Classes

URI	`http://purl.allotrope.org/ontologies/result#AFR_0002478`
Description	A wavelength filter cutoff setting is a control setting that specifies the minimum wavelength allowed to pass to the detector. [Allotrope]
Super-classes	af-r:AFR_0001243^c af-r:AFR_0001247^c

detector view volume^c # Classes

URI	`http://purl.allotrope.org/ontologies/result#AFR_0002491`
Description	A detector view volume is a quality quantification facet that quantifies the volume of material visible to the detector at the point of measurement. [Allotrope]
Super-classes	af-r:AFR_0001843^c
Restrictions	af-x:AFX_0002816 some cdao:PATO_0000918^c

LicenseDocument^c # Classes

URI	`http://purl.org/dc/terms/LicenseDocument`
Members	http://purl.allotrope.org/voc/creative-commons-attribution-license

RightsStatement^c # Classes

URI	`http://purl.org/dc/terms/RightsStatement`
Members	http://purl.allotrope.org/voc/copyright http://purl.allotrope.org/voc/attribution

Named Individuals ↑

Creative Commons Attribution 4.0 International Public License
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dct:RightsStatement

URI http://purl.allotrope.org/voc/attribution

Description These taxonomies contain material or may constitute derivative works of material which may be subject to copyright by one of the following organizations. By using these taxonomies, you agree to the following terms and conditions applicable to its contents: ****************************************************************************** Copyright Notice and Terms for IUPAC Gold Book ______________________________________________________________________________ Copyright © 1998, Regents of the University of California All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. ****************************************************************************** Copyright Notice and Terms for PSI-MS (Proteomics Standards Initiative - Mass Spectrometry) Mass spectrometer output files and spectra interpretation _____________________________________________________________________________ Created by Matt Chambers, Andreas Bertsch, Marius Kallhardt, Eric Deutsch Fredrik Levander, Pierre-Alain Binz, and Gerhard Mayer. Publisher: HUPO Proteomics Standards Initiative Mass Spectrometry Standards Working Group and HUPO Proteomics Standards Initiative Proteomics Informatics Working Group. This work is used pursuant to a Creative Commons license available here: http://creativecommons.org/licenses/by/3.0/legalcode ****************************************************************************** Attribution Notice for National Center for Biomedical Ontology materials. This work contains material from the Cell Ontology and Clinical Measurement Ontology, available here: http://bioportal.bioontology.org/. ****************************************************************************** Attribution Notice for ChEBI This work contains material from the European Bioinformatics Institute’s ChEBI database. ****************************************************************************** Attribution Notice for Quantities Units Dimensions Data Types (http://www.qudt.org/) This work contains content from www.qudt.org and is used pursuant to a Creative Commons License available here: http://creativecommons.org/licenses/by-sa/3.0/us/legalcode. The original work may have been modified. ****************************************************************************** Copyright and Attribution Notice for Dublin Core Metadata Initiative Document This work contains material from the following DCMI document used pursuant to a creative commons license available here: https://creativecommons.org/licenses/by/4.0/legalcode. This material may have been modified or changed. Timestamped URL: http://dublincore.org/documents/2012/06/14/dcmi-terms/ Date Issued: 2012-06-14 Document Status: This is a DCMI Recommendation. Copyright © 1995-2015 DCMI. All Rights Reserved. DCMI liability, trademark/service mark, document use and software licensing rules apply. ******************************************************************************

URI	`http://purl.allotrope.org/voc/attribution`
Description	These taxonomies contain material or may constitute derivative works of material which may be subject to copyright by one of the following organizations. By using these taxonomies, you agree to the following terms and conditions applicable to its contents: **************************************************************************** Copyright Notice and Terms for IUPAC Gold Book ______________________________________________________________________________ Copyright © 1998, Regents of the University of California All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. ************************************************************************** Copyright Notice and Terms for PSI-MS (Proteomics Standards Initiative - Mass Spectrometry) Mass spectrometer output files and spectra interpretation _____________________________________________________________________________ Created by Matt Chambers, Andreas Bertsch, Marius Kallhardt, Eric Deutsch Fredrik Levander, Pierre-Alain Binz, and Gerhard Mayer. Publisher: HUPO Proteomics Standards Initiative Mass Spectrometry Standards Working Group and HUPO Proteomics Standards Initiative Proteomics Informatics Working Group. This work is used pursuant to a Creative Commons license available here: http://creativecommons.org/licenses/by/3.0/legalcode ************************************************************************** Attribution Notice for National Center for Biomedical Ontology materials. This work contains material from the Cell Ontology and Clinical Measurement Ontology, available here: http://bioportal.bioontology.org/. ************************************************************************** Attribution Notice for ChEBI This work contains material from the European Bioinformatics Institute’s ChEBI database. ************************************************************************** Attribution Notice for Quantities Units Dimensions Data Types (http://www.qudt.org/) This work contains content from www.qudt.org and is used pursuant to a Creative Commons License available here: http://creativecommons.org/licenses/by-sa/3.0/us/legalcode. The original work may have been modified. ************************************************************************** Copyright and Attribution Notice for Dublin Core Metadata Initiative Document This work contains material from the following DCMI document used pursuant to a creative commons license available here: https://creativecommons.org/licenses/by/4.0/legalcode. This material may have been modified or changed. Timestamped URL: http://dublincore.org/documents/2012/06/14/dcmi-terms/ Date Issued: 2012-06-14 Document Status: This is a DCMI Recommendation. Copyright © 1995-2015 DCMI. All Rights Reserved. DCMI liability, trademark/service mark, document use and software licensing rules apply. ****************************************************************************

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dct:RightsStatement

URI	`http://purl.allotrope.org/voc/copyright`
Description	Copyright © 2015-2021 Allotrope Foundation

Creative Commons Attribution 4.0 International Public Licenseⁿⁱ

Class(es)

dct:LicenseDocument

URI http://purl.allotrope.org/voc/creative-commons-attribution-license

Description This work is licensed under a Creative Commons Attribution 4.0 International License http://creativecommons.org/licenses/by/4.0/. THESE MATERIALS ARE PROVIDED "AS IS" AND ALLOTROPE EXPRESSLY DISCLAIMS ALL WARRANTIES, EXPRESS, IMPLIED OR STATUTORY, INCLUDING, WITHOUT LIMITATION, THE WARRANTIES OF NON-INFRINGEMENT, TITLE, MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. Copyright © 2015-2021 Allotrope Foundation

URI	`http://purl.allotrope.org/voc/creative-commons-attribution-license`
Description	This work is licensed under a Creative Commons Attribution 4.0 International License http://creativecommons.org/licenses/by/4.0/. THESE MATERIALS ARE PROVIDED "AS IS" AND ALLOTROPE EXPRESSLY DISCLAIMS ALL WARRANTIES, EXPRESS, IMPLIED OR STATUTORY, INCLUDING, WITHOUT LIMITATION, THE WARRANTIES OF NON-INFRINGEMENT, TITLE, MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. Copyright © 2015-2021 Allotrope Foundation

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Class(es)

foaf:Organization

URI	`http://www.allotrope.org`

Namespaces ↑

default (:): http://purl.allotrope.org/voc/afo/domain/REC/2021/06/detection
af-c: http://purl.allotrope.org/ontologies/common#
af-cur: http://purl.allotrope.org/ontologies/curation#
af-e: http://purl.allotrope.org/ontologies/equipment#
af-m: http://purl.allotrope.org/ontologies/material#
af-p: http://purl.allotrope.org/ontologies/process#
af-q: http://purl.allotrope.org/ontologies/quality#
af-r: http://purl.allotrope.org/ontologies/result#
af-x: http://purl.allotrope.org/ontologies/property#
bfo: http://purl.obolibrary.org/obo/BFO
cdao: http://purl.obolibrary.org/obo/
chmo: http://purl.obolibrary.org/obo/CHMO
cl: http://purl.obolibrary.org/obo/CL
dct: http://purl.org/dc/terms/
foaf: http://xmlns.com/foaf/0.1/
go: http://purl.obolibrary.org/obo/GO
iao: http://purl.obolibrary.org/obo/IAO
obi: http://purl.obolibrary.org/obo/OBI
owl: http://www.w3.org/2002/07/owl#
prov: http://www.w3.org/ns/prov#
rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs: http://www.w3.org/2000/01/rdf-schema#
ro: http://purl.obolibrary.org/obo/RO
sdo: https://schema.org/
skos: http://www.w3.org/2004/02/skos/core#
xsd: http://www.w3.org/2001/XMLSchema#

^c	Classes
^op	Object Properties
^fp	Functional Properties
^dp	Data Properties
^dp	Annotation Properties
^p	Properties
ⁿⁱ	Named Individuals

AFO Detection Domain Ontology (REC/2021/06)

Metadata

Table of Contents

Overview

Classes ↑

detection wavelength^c # Classes

electronic absorbance detection wavelength^c # Classes

detection bandwidth^c # Classes

detector configuration^c # Classes

detector gain^c # Classes

detector setting^c # Classes

electronic absorbance detector setting^c # Classes

detector offset setting^c # Classes

detector sampling rate setting^c # Classes

electronic absorbance reference bandwidth setting^c # Classes

electronic absorbance reference wavelength setting^c # Classes

electronic absorbance bandwidth setting^c # Classes

electronic absorbance wavelength setting^c # Classes

detector scan range setting^c # Classes

detection duration setting^c # Classes

detector scan rate setting^c # Classes

detector gain setting^c # Classes

detector wavelength setting^c # Classes

detector bandwidth setting^c # Classes

wavelength filter cutoff setting^c # Classes

detector view volume^c # Classes

LicenseDocument^c # Classes

RightsStatement^c # Classes

Named Individuals ↑

Derivative works attributionⁿⁱ

Copyright © 2015-2021 Allotrope Foundationⁿⁱ

Creative Commons Attribution 4.0 International Public Licenseⁿⁱ

Noneⁿⁱ

Namespaces ↑

Legend

AFO Detection Domain Ontology (REC/2021/06)

Metadata

Table of Contents

Overview

Classes ↑

detection wavelengthc # Classes

electronic absorbance detection wavelengthc # Classes

detection bandwidthc # Classes

detector configurationc # Classes

detector gainc # Classes

detector settingc # Classes

electronic absorbance detector settingc # Classes

detector offset settingc # Classes

detector sampling rate settingc # Classes

electronic absorbance reference bandwidth settingc # Classes

electronic absorbance reference wavelength settingc # Classes

electronic absorbance bandwidth settingc # Classes

electronic absorbance wavelength settingc # Classes

detector scan range settingc # Classes

detection duration settingc # Classes

detector scan rate settingc # Classes

detector gain settingc # Classes

detector wavelength settingc # Classes

detector bandwidth settingc # Classes

wavelength filter cutoff settingc # Classes

detector view volumec # Classes

LicenseDocumentc # Classes

RightsStatementc # Classes

Named Individuals ↑

Derivative works attributionni

Copyright © 2015-2021 Allotrope Foundationni

Creative Commons Attribution 4.0 International Public Licenseni

Noneni

Namespaces ↑

Legend

detection wavelength^c # Classes

electronic absorbance detection wavelength^c # Classes

detection bandwidth^c # Classes

detector configuration^c # Classes

detector gain^c # Classes

detector setting^c # Classes

electronic absorbance detector setting^c # Classes

detector offset setting^c # Classes

detector sampling rate setting^c # Classes

electronic absorbance reference bandwidth setting^c # Classes

electronic absorbance reference wavelength setting^c # Classes

electronic absorbance bandwidth setting^c # Classes

electronic absorbance wavelength setting^c # Classes

detector scan range setting^c # Classes

detection duration setting^c # Classes

detector scan rate setting^c # Classes

detector gain setting^c # Classes

detector wavelength setting^c # Classes

detector bandwidth setting^c # Classes

wavelength filter cutoff setting^c # Classes

detector view volume^c # Classes

LicenseDocument^c # Classes

RightsStatement^c # Classes

Derivative works attributionⁿⁱ

Copyright © 2015-2021 Allotrope Foundationⁿⁱ

Creative Commons Attribution 4.0 International Public Licenseⁿⁱ

Noneⁿⁱ