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Apollo Structured Vocabulary (Apollo-SV)

Metadata

URI
http://purl.obolibrary.org/obo/apollo_sv.owl
Creator(s)
Mathias Brochhausen
Contributor(s)
Amanda Hicks
John Levander
Josh Hanna
Matt Diller
Mike Wagner
Shawn T. Brown
William R. Hogan
Version Information
v4.1.1
Version URI
http://purl.obolibrary.org/obo/apollo_sv/v4.1.1./apollo_sv.owl
Imports
http://purl.obolibrary.org/obo/bfo/2014-05-03/classes-only.owl
http://purl.obolibrary.org/obo/geo/dev/geo.owl
http://purl.obolibrary.org/obo/iao/pno/dev/pno.owl
http://purl.obolibrary.org/obo/ro/core.owl
License
https://creativecommons.org/licenses/by/4.0/
Ontology RDF
RDF (turtle)

Description

When citing Apollo-SV, use the permanent URL of the ontology: http://purl.obolibrary.org/obo/apollo_sv.owl. When referencing a specific component of the Apollo-SV such as a class, object property, annotation property, or individual, use the component's Uniform Resource Identifier (URI).

Table of Contents

  1. Classes
  2. Object Properties
  3. Functional Properties
  4. Datatype Properties
  5. Annotation Properties
  6. Named Individuals
  7. Namespaces
  8. Legend

Overview

Pictures say 1,000 words
Figure 1: Ontology overview

Classes

Aedes albopictusc # Classes

URI http://purl.obolibrary.obo/obo/NCBITaxon_7160
Super-classes obo:NCBITaxon_53541c

purely intentional entityc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000000
Source Ingarden, R. (1965b) Der Streit um die Existenz der Welt II/1. Formalontologie 1. Teil. Max Niemeyer, Tübingen.
Description

MB: Right now we represent 'purely intentional entities' as siblings to 'information content entities'. Given their nature I am not entirly sure that this is correct. It seems that both 'information content entity' and 'simulation' are subclass to 'purely intentional entity'.

Super-classes obo:BFO_0000031c
Sub-classes obo:APOLLO_SV_00000070c

epidemic modelc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000001
Super-classes obo:APOLLO_SV_00000174c

basic reproduction numberc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000002
Description

MB: Here we run into the well know DL problem that we cannot specify that the infectious agent that is transmitted is of the same type that the infectious agent the population is susceptible to.

Super-classes (obo:APOLLO_SV_00000043c and ub209bL53C13c)
obo:APOLLO_SV_00000043c

population immunity surveyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000003
Description

Comment from Mike (to do!): I checked because an infection and immunity census would involve two different census methods. One would be some kind of disease surveillance that counts infections. The other is some kind of immunity census process based on seroprevalence studies or vaccination registries.

Super-classes obo:APOLLO_SV_00000152c

simulating of process of type Xc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000005
Description

For example, in a simulated volcano eruption, representations of lava, lava tubes, vents, etc. take the place of actual lava, lava tubes, vents, etc.

Even in the case of a simulated disaster scenario where actual ambulances, fire trucks, and people participate, representations of catastrophic events and injuries, etc. take the place of real ones.

Super-classes obo:OBI_0000011c
Sub-classes obo:APOLLO_SV_00000055c

simulation requester identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000006
Description

Class was originally created to correspond with a complex type from Apollo XSD v3.1.0.

Super-classes obo:IAO_0020000c

simulation software applicationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000007
Super-classes obo:IAO_0000594c
Sub-classes obo:APOLLO_SV_00000540c
obo:APOLLO_SV_00000544c
obo:APOLLO_SV_00000561c
obo:APOLLO_SV_00000557c

software developmentc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000008
Super-classes obo:OBI_0000011c

simulator developer identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000009
Super-classes obo:APOLLO_SV_00000105c

simulator identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000010
Super-classes obo:IAO_0020000c
Restrictions obo:BFO_0000050op some obo:APOLLO_SV_00000054c

control strategy reactive start time informationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000011
Super-classes obo:APOLLO_SV_00000208c

simulation time step valuec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000012
Super-classes obo:IAO_0000029c

simulator version identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000013
Super-classes obo:IAO_0020000c
Restrictions obo:BFO_0000050op some obo:APOLLO_SV_00000054c

simulation time step unitc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000014
Super-classes obo:UO_0000003c

simulation run lengthc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000015
Super-classes obo:APOLLO_SV_00000793c
Restrictions obo:BFO_0000051op some obo:APOLLO_SV_00000068c

infectious period durationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000016
Description

MB: In order to get the temporal occupation relations I added properties that I renamed with BFO2 URIs.

Super-classes obo:APOLLO_SV_00000243c
Restrictions obo:IAO_0000136op some (obo:BFO_0000038c and ub209bL296C17c)

latent period durationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000017
Description

The duration of the period between when an organism becomes infected and when it becomes infectious.

Super-classes obo:APOLLO_SV_00000243c
Restrictions obo:IAO_0000136op some (obo:BFO_0000038c and ub209bL323C17c)

count of simulated susceptible populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000018
Super-classes obo:APOLLO_SV_00000032c

count of simulated exposed populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000019
Super-classes obo:APOLLO_SV_00000032c

count of simulated contagious populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000020
Super-classes obo:APOLLO_SV_00000032c

count of simulated resistant populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000021
Super-classes obo:APOLLO_SV_00000032c

count of simulated populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000022
Description

MW: I know this causes problems with our set-theoretic definition. Unfortunately the compartmental models produce fractional counts at each of their time steps, including the final step.

Any ideas? I’ve considered and rejected allowing individual organisms to be fractional. Perhaps if we just replace the term “cardinality” in the definition with ‘computed size’

Super-classes (obo:APOLLO_SV_00000032c and ub209bL369C13c)
obo:APOLLO_SV_00000032c

vaccination dose schedulec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000023
Super-classes obo:APOLLO_SV_00000084c

vaccination compliancec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000024
Description

MB: This class is still awaiting its class restriction. It should be restricted as being about a population that has members that are eligible for a vaccination against the members that are eligible and consented the vaccination. There is a class "eligibility rule" in OBI (http://purl.obolibrary.org/obo/OBI_0500026), but it is restricted by definition to studies. I put in an issue in the OBI issue tracker. The consenting process and its specified outcome should be done in d-acts, but needs to be done properly.

Super-classes obo:OBI_0302867c

vaccination efficacyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000025
Description

need to generate class restriction. Something like:

'is realized by' some (processual_entity and (has_participant some ('Anatomical structure' and ('is physical basis of' some 'protective resistance'))

we'd also like to say that the protective resistance disposition began to exist during the process.

can't recall whether we should use process or processual_entity for future BFO compatibility.

Super-classes obo:APOLLO_SV_00000227c

facility surveyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000026
Super-classes obo:OBI_0000011c

school facility censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000027
Description

Motivating use case is Synthia synthetic population data.

Super-classes obo:APOLLO_SV_00000173c

infectious disease control strategy executionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000029
Super-classes obo:OBI_0000011c

hospital patient populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000030
Description

Key motivating use case was Synthia synthetic population data.

Super-classes obo:OMRSE_00000023c

simulation of populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000031
Super-classes obo:APOLLO_SV_00000070c

countc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000032
Super-classes obo:IAO_0000109c
Sub-classes obo:STATO_0000088c
obo:APOLLO_SV_00000018c
obo:APOLLO_SV_00000099c
obo:APOLLO_SV_00000087c
obo:APOLLO_SV_00000137c
obo:APOLLO_SV_00000020c
obo:APOLLO_SV_00000281c
obo:APOLLO_SV_00000019c
obo:APOLLO_SV_00000098c
obo:APOLLO_SV_00000497c
obo:APOLLO_SV_00000022c
obo:APOLLO_SV_00000021c
obo:APOLLO_SV_00000088c

countingc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000033
Super-classes obo:OBI_0000011c

simulation of organismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000034
Description

a simulation that is about an organism

Sub-classes obo:APOLLO_SV_00000040c
obo:APOLLO_SV_00000053c
obo:APOLLO_SV_00000059c
obo:APOLLO_SV_00000074c
obo:APOLLO_SV_00000041c
obo:APOLLO_SV_00000073c
obo:APOLLO_SV_00000038c
obo:APOLLO_SV_00000063c
obo:APOLLO_SV_00000072c

normal distributionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000036
Super-classes obo:APOLLO_SV_00000251c

simulation of exposed organismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000038
Super-classes obo:APOLLO_SV_00000034c

simulated population location identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000039
Super-classes obo:IAO_0020000c

simulation of infectious organismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000040
Super-classes obo:APOLLO_SV_00000034c

simulation of recovered organismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000041
Super-classes obo:APOLLO_SV_00000034c

simulation of diseasec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000042
Super-classes obo:APOLLO_SV_00000070c
Restrictions obo:BFO_0000051op some (obo:IAO_0020000c and ub209bL697C17c)

reproduction numberc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000043
Super-classes (obo:OBI_0000679c and ub209bL716C13c)
obo:OBI_0000679c
Sub-classes obo:APOLLO_SV_00000002c

nursery school student populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000044
Description

Key motivating use case was Synthia synthetic population data.

Super-classes obo:APOLLO_SV_00000178c

obsolete_asymptomatic infection fraction c # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000045
Super-classes oboInOwl:ObsoleteClassc

vaccine supply schedulec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000046
Super-classes obo:APOLLO_SV_00000795c

vaccination administration capacityc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000047
Super-classes obo:APOLLO_SV_00000795c

antiviral treatment efficacyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000048
Description

MB: For DL reasons the easiest way to formalize the definition was to assume only organism that are either host or not immune undergo antiviral treatment. Is that adequate? I assume this'll create problems…

Super-classes obo:APOLLO_SV_00000227c

antiviral efficacy delayc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000049
Super-classes obo:APOLLO_SV_00000243c

antiviral compliancec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000050
Description

MW: Since the estimates that modelers use are from real populations, I have two questions: 1. Should we distinguish between real and simulated population? 2. If so, do we want to represent a ‘measured’ antiviral compliance number that is a property of a real population and distinguish it from this number that we are using to study what might happen in a simulated population?

MB: This issue will need to be taken care of in the axiomatization of simulated population

Super-classes obo:OBI_0302867c

antiviral supply schedulec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000051
Super-classes obo:APOLLO_SV_00000795c

antiviral administration schedulec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000052
Super-classes obo:APOLLO_SV_00000795c

simulation of organism awaiting control measurec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000053
Description

This class will need more ontological reasoning, since the "willing" part of the definition is not representable in BFO to date.

Super-classes obo:APOLLO_SV_00000034c

complete simulator identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000054
Description

MB: I am not 100% happy with the elucidation. Can't we just say that this is the full identifier identifying the simulator with both its name and its version number?

Super-classes obo:IAO_0020000c

epidemic simulatingc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000055
Super-classes obo:APOLLO_SV_00000005c
(obo:APOLLO_SV_00000005c and ub209bL890C13c)

hospital patient population censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000056
Description

Motivating use case is to cover Synthia data, and possibly configuration/output of the MRSA simulator in the MIDAS community (CA-MRSA Repast).

Super-classes obo:APOLLO_SV_00000153c

simulation of organism not awaiting control measurec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000058
Description

This class will need more ontological reasoning, since the "unwilling" part of the definition is not representable in BFO to date.

Super-classes (obo:APOLLO_SV_00000034c and ub209bL931C13c)

simulation of organism awaiting effect of control measurec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000059
Super-classes obo:APOLLO_SV_00000034c

simulation of antiviral control measurec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000060
Description

MB: For all the antiviral-related classes I referred to ChEBI: Antiviral class. I wasn't able to use the plug-in though (there was a JAVA heap space error, probably due to the size of ChEBI). AND (more importantly) I did not re-use any of the ChEBI hierarchy which, even in the BFO version is a mess. Maybe we need to discuss this.

Super-classes obo:APOLLO_SV_00000070c

simulation of vaccination control measurec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000061
Super-classes obo:APOLLO_SV_00000070c

primary school student populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000062
Description

Key motivating use case was Synthia synthetic population data.

Super-classes obo:APOLLO_SV_00000178c

simulation of control measure participantc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000063
Super-classes obo:APOLLO_SV_00000034c

simulation time seriesc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000064
Description

MB: The ontological status of simulations (Thoughts)

One property that seems to be common among simulations in comparison to many other fictions is the fact that the chronological order of the simulated purely intentional entities is not changed in the process of simulating.

While in many pieces of fiction the order in which the purely intentional entities are created can vary, this is not the case for simulations.

Super-classes obo:IAO_0000584c

simulation identifier numeralc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000065
Description

Class was originally created to correspond with an element from Apollo XSD v3.1.0.

Super-classes obo:IAO_0000029c

simulation of time stepc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000066
Super-classes obo:APOLLO_SV_00000070c
(ub209bL1083C29c and ub209bL1093C13c)

simulation time step action specificationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000068
Description

simulation time step value simulation time step unit simulation run length

The time step value and unit are specified using a scalar value specification.

Super-classes (ub209bL1121C29c and ub209bL1126C13c and ub209bL1131C13c)
obo:APOLLO_SV_00000793c

time step identifying numeralc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000069
Super-classes obo:IAO_0000029c

simulationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000070
Super-classes obo:APOLLO_SV_00000000c
Sub-classes obo:APOLLO_SV_00000042c
obo:APOLLO_SV_00000066c
obo:APOLLO_SV_00000031c
obo:APOLLO_SV_00000060c
obo:APOLLO_SV_00000061c
In domain of obo:APOLLO_SV_00000067op

obsolete_simulation of population locationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000071
Super-classes oboInOwl:ObsoleteClassc

simulation of susceptible organismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000072
Super-classes obo:APOLLO_SV_00000034c

simulation of symptomatic organismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000073
Super-classes obo:APOLLO_SV_00000034c

simulation of asymptomatic organismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000074
Super-classes obo:APOLLO_SV_00000034c

infectious disease control objective specificationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000075
Description

typically, the process endpoint is achievement of R0 < 1

Super-classes obo:IAO_0000005c
Sub-classes obo:APOLLO_SV_00000128c

μc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000076
Super-classes oboInOwl:ObsoleteClassc

σc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000077
Super-classes oboInOwl:ObsoleteClassc

beta distributionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000078
Super-classes obo:APOLLO_SV_00000251c

deprecated log normal distributionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000079
Super-classes oboInOwl:ObsoleteClassc

uniform distributionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000080
Super-classes obo:APOLLO_SV_00000251c

triangular distributionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000081
Super-classes obo:APOLLO_SV_00000251c

Bayesian networkc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000082
Super-classes obo:APOLLO_SV_00000246c

temporal Bayesian networkc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000083
Super-classes obo:APOLLO_SV_00001008c

control strategy dose schedulec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000084
Super-classes obo:APOLLO_SV_00000795c
Restrictions obo:BFO_0000050op some obo:APOLLO_SV_00000086c
Sub-classes obo:APOLLO_SV_00000023c

age data in age brackets data setc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000085
Super-classes (obo:IAO_0000100c and ub209bL1337C13c)
obo:IAO_0000100c

infectious disease control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000086
Description

The essential goal of an infectious disease control strategy is to protect the susceptible organisms in a population.

Super-classes obo:IAO_0000104c
Sub-classes obo:APOLLO_SV_00000323c
obo:APOLLO_SV_00000327c
obo:APOLLO_SV_00000322c
obo:APOLLO_SV_00000550c
obo:APOLLO_SV_00000229c
obo:APOLLO_SV_00000308c
obo:APOLLO_SV_00000486c
obo:APOLLO_SV_00000230c
obo:APOLLO_SV_00000573c

count of susceptible populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000087
Super-classes obo:APOLLO_SV_00000032c

count of contacted populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000088
Super-classes obo:APOLLO_SV_00000032c

measured vaccination efficacyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000089
Description
  1. Apollo-SV does not distinguish between ‘vaccine efficacy’ and ‘vaccine effectiveness.’

  2. Apollo-SV also considers the use of ‘vaccine’ in both terms a misnomer.

Super-classes obo:IAO_0000109c
(obo:IAO_0000109c and ub209bL1410C13c and ub209bL1415C13c)

vaccination efficacy study design executionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000090
Super-classes obo:OBI_0000471c

obsolete_immunec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000091
Super-classes oboInOwl:ObsoleteClassc

95% confidence intervalc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000092
Super-classes obo:APOLLO_SV_00001008c

Bayesian credible intervalc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000093
Super-classes obo:APOLLO_SV_00001008c

communityc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000094
Super-classes (obo:BFO_0000027c and ub209bL1496C13c and ub209bL1501C13c)
obo:BFO_0000027c

deprecated discrete probability distributionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000095
Super-classes oboInOwl:ObsoleteClassc

obsolete unit of measurec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000096
Super-classes obo:IAO_0000030c

ecosystemc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000097
Super-classes obo:BFO_0000040c

count of contagious populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000098
Super-classes obo:APOLLO_SV_00000032c

count of resistant populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000099
Super-classes obo:APOLLO_SV_00000032c

abiotic ecosystemc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000100
Super-classes obo:BFO_0000040c

fixed control strategy start time specificationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000101
Super-classes obo:APOLLO_SV_00000794c

control strategy reactive endpoint fractionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000103
Super-classes obo:IAO_0000055c
Restrictions obo:BFO_0000050op some obo:APOLLO_SV_00000086c
Sub-classes obo:APOLLO_SV_00000150c

biotic ecosystemc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000104
Super-classes obo:BFO_0000040c

software developer identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000105
Super-classes obo:IAO_0020000c
Sub-classes obo:APOLLO_SV_00000009c

complete software identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000106
Super-classes obo:IAO_0020000c

atmospherec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000107
Description

atmosphere of Earth, Earth's moon, Saturn, Titan, etc.

Super-classes obo:BFO_0000024c
Members obo:APOLLO_SV_00000113

software version identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000108
Super-classes obo:IAO_0020000c
Restrictions obo:BFO_0000050op some obo:APOLLO_SV_00000106c

software identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000109
Super-classes obo:IAO_0020000c
Restrictions obo:BFO_0000050op some obo:APOLLO_SV_00000106c

atmosphere of geographical regionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000110
Super-classes obo:GEO_000000371c

obsolete_educational institutionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000111
Super-classes oboInOwl:ObsoleteClassc

school closure target facilitiesc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000112
Super-classes (ub209bL1717C29c and ub209bL1731C13c)
obo:IAO_0000030c

infectionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000114
Description

infection is reproduction of a pathogen inside some tissue of a host. By associating infection with the classes latent period and infectious period, which are associated with specific pathogen species and host species, Apollo-SV defines infection further as reproduction of a particular pathogen taxon inside some tissue of a particular host taxon.

Super-classes obo:GO_0000003c
Restrictions obo:RO_0002087op some obo:APOLLO_SV_00000115c

infection acquisitionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000115
Description

Apollo-SV defines infection acquisition rather than infection transmission, which is the direction of movement of a pathogen in current use. The Apollo-SV conceptualization is simpler when accounting for infections acquired from contaminated things. The likelihood of acquisition is expressed by parameters such as the basic reproduction rate and transmission coefficient.
An infection is acquired from an infectious organism or a contaminated thing.

Super-classes obo:GO_0044409c

vaccine identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000117
Super-classes obo:IAO_0020000c
Restrictions obo:IAO_0000219op some obo:BFO_0000040c

latent periodc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000118
Super-classes obo:BFO_0000015c

vaccination identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000119
Super-classes obo:IAO_0020000c
Restrictions obo:IAO_0000219op some obo:IAO_0000033c

vaccination coursec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000120
Super-classes obo:APOLLO_SV_00000795c

speciesc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000121
Super-classes obo:APOLLO_SV_00001008c

antiviral identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000122
Super-classes obo:IAO_0020000c
Restrictions obo:IAO_0000219op some obo:BFO_0000040c

school closure control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000123
Super-classes obo:APOLLO_SV_00000229c

school closure durationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000124
Super-classes obo:APOLLO_SV_00000794c

school calendarc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000125
Super-classes obo:IAO_0000030c

control strategy target facilitiesc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000126
Super-classes obo:OMRSE_00000062c

control strategy target populations and prioritizationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000127
Super-classes obo:APOLLO_SV_00001008c

control strategy target population fractionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000128
Description

a specification of a population that a control strategy applies to. It is intended to apply to a real population, so I don’t know whether you would consider it a simulated thing. I don’t.

Super-classes obo:APOLLO_SV_00000075c

obsolete_Reactive control measurec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000129
Super-classes oboInOwl:ObsoleteClassc

reactive control strategy testc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000130
Super-classes obo:IAO_0000001c

reactive control strategy thresholdc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000131
Super-classes obo:IAO_0000027c

secondary school student populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000132
Description

Key motivating use case was Synthia synthetic population data.

Super-classes obo:APOLLO_SV_00000178c

control strategy response delayc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000133
Super-classes obo:IAO_0000109c

ascertainment delayc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000134
Description

per Mike Wagner, this is input

Super-classes obo:IAO_0000033c

ascertainment fractionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000135
Description

fraction of organisms (usually infected) that a surveillance system detects out of the total population

Super-classes obo:IAO_0000027c

vaccination control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000136
Super-classes obo:APOLLO_SV_00000194c
Sub-classes obo:APOLLO_SV_00000196c

vaccine valencec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000137
Super-classes obo:APOLLO_SV_00000032c

antiviral coursec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000138
Super-classes obo:APOLLO_SV_00000795c

control strategy compliancec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000139
Description

the class restriction can be made more precise AH

Super-classes (obo:IAO_0000109c and ub209bL2090C13c)

infectious periodc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000140
Super-classes obo:BFO_0000015c

protect against effect of pathogenc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000141
Super-classes obo:IAO_0000005c

vaccinationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000142
Super-classes obo:OGMS_0000090c

vaccine dispositionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000143
Description

replaced with VO 'vaccine function'

Super-classes obo:BFO_0000016c

disposition to become contaminated with a pathogenc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000144
Super-classes obo:BFO_0000016c

resistance to infectionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000145
Super-classes obo:BFO_0000016c
Sub-classes obo:APOLLO_SV_00000336c
obo:APOLLO_SV_00000151c
obo:APOLLO_SV_00000335c

betac # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000146
Description

it is the same thing as transmission coefficient

Super-classes obo:IAO_0000007c

inter-personal contact probabilityc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000147
Super-classes obo:APOLLO_SV_00001008c

random number seedc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000148
Super-classes obo:IAO_0000033c

susceptibility measurement datumc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000149
Super-classes obo:IAO_0000109c
Restrictions obo:IAO_0000136op some obo:APOLLO_SV_00000172c

vaccination reactive end point fractionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000150
Super-classes obo:APOLLO_SV_00000103c

immune resistance to infectionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000151
Super-classes obo:APOLLO_SV_00000145c
Sub-classes obo:APOLLO_SV_00000301c

population surveyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000152
Super-classes obo:OBI_0000011c
Sub-classes obo:APOLLO_SV_00000003c
obo:APOLLO_SV_00000155c
obo:APOLLO_SV_00000396c
obo:APOLLO_SV_00000158c

population censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000153
Super-classes obo:APOLLO_SV_00000173c
Sub-classes obo:APOLLO_SV_00000056c
obo:APOLLO_SV_00000501c
obo:APOLLO_SV_00000176c

exposed populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000154
Super-classes obo:APOLLO_SV_00000516c

population infection surveyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000155
Description

Comment from Mike (to do!): I checked because an infection and immunity census would involve two different census methods. One would be some kind of disease surveillance that counts infections. The other is some kind of immunity census process based on seroprevalence studies or vaccination registries.

Super-classes obo:APOLLO_SV_00000152c

contagious populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000156
Super-classes obo:APOLLO_SV_00000516c

population infection and immunity censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000157
Super-classes obo:APOLLO_SV_00000173c

population demographic surveyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000158
Super-classes obo:APOLLO_SV_00000152c

population demographic censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000159
Super-classes obo:APOLLO_SV_00000173c

obsolete_contaminationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000160
Super-classes oboInOwl:ObsoleteClassc

MIDAS scenarioc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000161
Super-classes obo:IAO_0000030c

MIDAS scenario representationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000162
Description

need to change the text definition. need to change label to be more consistent with current Apollo terminology (possibly 'infectious disease scenario'.

Super-classes obo:IAO_0000030c

recovered populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000163
Super-classes obo:APOLLO_SV_00000516c

agent-level ecosystem data generationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000164
Super-classes obo:APOLLO_SV_00000796c

agent-level ecosystem censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000165
Super-classes obo:APOLLO_SV_00000173c

contaminated thingc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000166
Description

A contaminated thing is an entity that contains a pathogen (either internal to itself or on its surface) that is not undergoing an infection.

Super-classes obo:BFO_0000004c

contamination acquisitionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000167
Super-classes obo:GO_0044409c

nursery school student population censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000168
Description

Motivating use case is Synthia synthetic population data.

Super-classes obo:APOLLO_SV_00000176c

primary school student population censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000169
Description

Motivating use case is Synthia synthetic population data.

Super-classes obo:APOLLO_SV_00000176c

secondary school student population censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000170
Description

Motivating use case is Synthia synthetic population data.

Super-classes obo:APOLLO_SV_00000176c

antiviral treatmentc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000171
Super-classes obo:APOLLO_SV_00000318c

susceptibilityc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000172
Super-classes obo:BFO_0000016c

censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000173
Super-classes (obo:IAO_0000100c and ub209bL2889C13c)
obo:IAO_0000100c
Sub-classes obo:APOLLO_SV_00000189c
obo:APOLLO_SV_00000159c
obo:APOLLO_SV_00000157c
obo:APOLLO_SV_00000201c
obo:APOLLO_SV_00000595c
obo:APOLLO_SV_00000165c
obo:APOLLO_SV_00000153c
obo:APOLLO_SV_00000188c
obo:APOLLO_SV_00000187c
obo:APOLLO_SV_00000309c
obo:APOLLO_SV_00000199c
obo:APOLLO_SV_00000027c

disease transmission modelc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000174
Super-classes obo:IAO_0000064c
Sub-classes obo:APOLLO_SV_00000294c
obo:APOLLO_SV_00000552c
obo:APOLLO_SV_00000303c
obo:APOLLO_SV_00000001c

obsolete_school organizationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000175
Super-classes oboInOwl:ObsoleteClassc

school student population censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000176
Description

Motivating use case is Synthia synthetic population data.

Super-classes obo:APOLLO_SV_00000153c
Sub-classes obo:APOLLO_SV_00000168c
obo:APOLLO_SV_00000170c
obo:APOLLO_SV_00000169c

school student populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000178
Description

Key motivating use case was Synthia synthetic population data.

Super-classes obo:OMRSE_00000023c
Sub-classes obo:APOLLO_SV_00000062c
obo:APOLLO_SV_00000132c
obo:APOLLO_SV_00000044c

simulator configurationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000179
Super-classes obo:APOLLO_SV_00000793c
Restrictions obo:BFO_0000051op some ()
Sub-classes obo:APOLLO_SV_00000210c

obsolete_student rolec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000180
Super-classes oboInOwl:ObsoleteClassc

antiviral control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000181
Super-classes obo:APOLLO_SV_00000304c

contagiousnessc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000182
Super-classes obo:BFO_0000016c

simulator time specificationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000183
Super-classes obo:APOLLO_SV_00000793c
(ub209bL3040C29c and ub209bL3045C13c)

infectious disease scenarioc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000184
Description

An infectious disease scenario contains counts of infections of a particular pathogen in a particular host in a particular ecosystem at a particular point in time, minimally. Agent-based ecosystems represent each host individually.

The infectious disease scenario typically also includes a lot of additional data about the ecosystem, including data about things like transmission probabililites, control measures, the immunity or other resistance status of host individuals, and so on.

Super-classes obo:IAO_0000100c
Restrictions obo:IAO_0000136op some obo:APOLLO_SV_00000097c

scenario datec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000185
Super-classes obo:IAO_0020000c

contaminationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000186
Description

the preferred term is biological contamination to distinguish from things like radiological contamination, contamination of the Gulf of Mexico with oil, the contamination of air with pollution, etc.

Super-classes obo:GO_0008150c

population treatment censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000187
Super-classes obo:APOLLO_SV_00000173c
Sub-classes obo:APOLLO_SV_00000607c

population and environment censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000188
Description

This census should exclude infection, immunity, treatment, or contamination.

Super-classes obo:APOLLO_SV_00000173c
Sub-classes obo:APOLLO_SV_00000197c

control strategy inventory censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000189
Super-classes obo:APOLLO_SV_00000173c

contagious organismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000190
Super-classes obo:APOLLO_SV_00000238c

transmission coefficientc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000191
Super-classes obo:OBI_0001554c

obsolete vaccination efficacy measuredc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000192
Super-classes obo:IAO_0000027c

vaccination efficacy inferredc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000193
Super-classes obo:IAO_0000027c

individual treatment control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000194
Super-classes (obo:APOLLO_SV_00000086c and ub209bL3208C13c)
Sub-classes obo:APOLLO_SV_00000589c
obo:APOLLO_SV_00000409c
obo:APOLLO_SV_00000333c
obo:APOLLO_SV_00000304c
obo:APOLLO_SV_00000136c

target populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000195
Super-classes obo:PCO_0000001c

ring vaccination individual treatment control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000196
Super-classes obo:APOLLO_SV_00000136c

agent level population and environment censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000197
Description

An instance of the an AgentLevel PopulationAndEnvironmentCensus type comprises an AgentLevel PopulationAndEnvironmentCensus Description, which describes the biotic and abiotic ecosystems elements that are counted by the census, and a URL where the census (the counts) can be retrieved.

Super-classes obo:APOLLO_SV_00000188c

agent model ecosystem census descriptionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000198
Description

At present, this class corresponds with an XSD type that contains authentication plus information needed to generate a Synthia synthetic population dataset including (1) geographical location and (2) a list of household characteristics.

Super-classes obo:IAO_0000030c

compartment model population and environment censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000199
Description

The Apollo XSD allows us to specify counts of certain subpopulations and abiotic ecosystem elements for a compartmental model (vs. specifying each individual in the population as in agent model population and environment census).

Super-classes obo:APOLLO_SV_00000173c

population strata definitionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000200
Super-classes obo:IAO_0000030c

contaminated thing censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000201
Super-classes obo:APOLLO_SV_00000173c

indexable Apollo itemc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000202
Description

A class representing an abstract type. This class has no attributes and programmers should use it to determine whether an instance should be saved or can be retrieved.

Super-classes obo:IAO_0000030c

NCBI taxon identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000203
Super-classes obo:APOLLO_SV_00000509c

disease outcomec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000204
Description

The infectious disease type in the XSD has a disease outcome element, which specifies whether someone became symptomatic, was hospitalized, etc. All of these outcomes require some process to occur. For sequalae of disease, it is that the realization of the disease is an etiological process that creates some other disorder. For example, fever is often occurs because of high levels of certain interleukins (which is a disorder).

So I am comfortable with disease outcome as a process. It is also consistent with the probabilitistic information that will go with it, as a future probability is almost always (if not always) the probability of some event occurring (e.g., coin turning up heads, raining, developing a disease),

Super-classes (ub209bL3303C22c or ub209bL3308C13c)
obo:BFO_0000015c
Sub-classes obo:APOLLO_SV_00000223c
obo:APOLLO_SV_00000224c
obo:APOLLO_SV_00000225c

susceptible organismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000205
Super-classes obo:OBI_0100026c

immune organismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000206
Super-classes obo:OBI_0100026c
Sub-classes obo:APOLLO_SV_00000299c
obo:APOLLO_SV_00000300c

resistant organismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000207
Super-classes obo:OBI_0100026c

control strategy start time informationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000208
Super-classes obo:IAO_0000030c
Sub-classes obo:APOLLO_SV_00000011c

infected organismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000209
Super-classes obo:APOLLO_SV_00000238c

apollo simulator configurationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000210
Super-classes obo:APOLLO_SV_00000179c

transmission probabilityc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000211
Super-classes obo:APOLLO_SV_00000470c

treatment administration capacity schedulec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000212
Super-classes obo:IAO_0000104c

treatment supply schedulec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000213
Super-classes obo:APOLLO_SV_00000500c

vaccination efficacy for simulator configurationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000214
Super-classes obo:IAO_0000030c

probability distributionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000215
Super-classes obo:IAO_0000030c
Sub-classes obo:APOLLO_SV_00000216c
obo:APOLLO_SV_00000477c
obo:APOLLO_SV_00000246c
obo:APOLLO_SV_00000245c
obo:APOLLO_SV_00000247c

discrete probability distributionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000216
Super-classes obo:APOLLO_SV_00000215c

infection state data itemc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000217
Super-classes obo:IAO_0000027c

vaccination preventable outcomec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000218
Super-classes obo:IAO_0000005c

Apollo pathogen codec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000219
Super-classes obo:IAO_0020000c

abiotic ecosystem elementc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000220
Description

Class was originally created to correspond with an element from Apollo XSD v3.1.0.

Super-classes obo:BFO_0000040c
Sub-classes obo:APOLLO_SV_00000571c

immune population acting like immunec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000221
Super-classes obo:APOLLO_SV_00000235c

immune population acting like not immunec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000222
Super-classes obo:APOLLO_SV_00000235c

becoming asymptomaticc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000223
Super-classes obo:APOLLO_SV_00000204c

becoming symptomaticc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000224
Super-classes obo:APOLLO_SV_00000204c

becoming severely symptomaticc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000225
Super-classes obo:APOLLO_SV_00000204c

infectiousness profilec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000226
Description

This is probably a 'process profile' according to BFO2

Super-classes obo:BFO_0000144c

infectious disease treatment efficacyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000227
Description

need to generate class restriction. Something like:

'is realized by' some (processual_entity and (has_participant some ('Anatomical structure' and ('is physical basis of' some 'protective resistance'))

we'd also like to say that the protective resistance disposition began to exist during the process.

can't recall whether we should use process or processual_entity for future BFO compatibility.

Super-classes obo:BFO_0000016c
Sub-classes obo:APOLLO_SV_00000048c
obo:APOLLO_SV_00000025c

border control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000228
Super-classes obo:APOLLO_SV_00000486c

place closure control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000229
Super-classes obo:APOLLO_SV_00000086c
Sub-classes obo:APOLLO_SV_00000286c
obo:APOLLO_SV_00000123c

case isolation control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000230
Super-classes obo:APOLLO_SV_00000086c
Sub-classes obo:APOLLO_SV_00000489c

travel restriction control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000231
Super-classes obo:APOLLO_SV_00000486c

clade namec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000232
Description

Some regard a clade to be a single branch on the tree of life. [http://en.wikipedia.org/wiki/Clade]

Super-classes obo:APOLLO_SV_00000509c

infected populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000233
Super-classes obo:APOLLO_SV_00000516c

susceptible populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000234
Super-classes obo:APOLLO_SV_00000516c

immune populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000235
Super-classes obo:APOLLO_SV_00000516c
Sub-classes obo:APOLLO_SV_00000222c
obo:APOLLO_SV_00000221c

asymptomatic hostc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000236
Super-classes obo:APOLLO_SV_00000238c

pathogenc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000237
Super-classes obo:OBI_0100026c

hostc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000238
Super-classes obo:OBI_0100026c
Sub-classes obo:APOLLO_SV_00000236c
obo:APOLLO_SV_00000190c
obo:APOLLO_SV_00000209c

infectious diseasec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000239
Description

Infection is the etiological process, as defined by OGMS, for infectious disease. However, OGMS does not relate its etiological process class to its disorder class as of this writing. So it is not clear how to connect infectious disease to its infection etiological process.

Super-classes obo:OGMS_0000031c
Sub-classes obo:DOID_0060478c
obo:DOID_12205c
obo:DOID_8469c

census reference datec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000240
Super-classes obo:IAO_0000030c

age range categoryc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000241
Super-classes obo:OBI_0001931c

name of temporal intervalc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000242
Super-classes obo:APOLLO_SV_00000395c
Restrictions obo:BFO_0000051op some obo:UO_0000003c
Sub-classes obo:APOLLO_SV_00000385c
obo:APOLLO_SV_00000386c

durationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000243
Super-classes obo:IAO_0000416c
Restrictions obo:IAO_0000136op some (obo:BFO_0000038c and ub209bL3813C17c)
Sub-classes obo:APOLLO_SV_00000287c
obo:APOLLO_SV_00000016c
obo:APOLLO_SV_00000483c
obo:APOLLO_SV_00000291c
obo:APOLLO_SV_00000441c
obo:APOLLO_SV_00000258c
obo:APOLLO_SV_00000280c
obo:APOLLO_SV_00000272c
obo:APOLLO_SV_00000379c
obo:APOLLO_SV_00000297c
obo:APOLLO_SV_00000449c
obo:APOLLO_SV_00000505c
obo:APOLLO_SV_00000017c
obo:APOLLO_SV_00000482c
obo:APOLLO_SV_00000313c
obo:APOLLO_SV_00000049c
obo:APOLLO_SV_00000267c
obo:APOLLO_SV_00000384c
obo:APOLLO_SV_00000490c

disease unique identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000244
Description

This class is different from its superclass, in that the identifier is non-redundant with other identifiers in its context (such as a coding system or terminology or ontology). The superclass admits of natural langugage names of diseases, whereas this one typically does not.

Super-classes obo:APOLLO_SV_00000598c

conditional probability distributionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000245
Super-classes obo:APOLLO_SV_00000215c

joint probability distributionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000246
Super-classes obo:APOLLO_SV_00000215c
Sub-classes obo:APOLLO_SV_00000082c

unconditional probability distributionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000247
Super-classes obo:APOLLO_SV_00000215c
Sub-classes obo:APOLLO_SV_00000249c
obo:APOLLO_SV_00000248c

obsolete parametric probability distributionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000248
Super-classes obo:APOLLO_SV_00000247c

nonparametric probability distributionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000249
Super-classes obo:APOLLO_SV_00000247c
Sub-classes obo:APOLLO_SV_00000252c
obo:APOLLO_SV_00000253c

discrete parametric probability distributionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000250
Super-classes obo:APOLLO_SV_00000477c

continuous parametric probability distributionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000251
Super-classes obo:APOLLO_SV_00000477c
Sub-classes obo:APOLLO_SV_00000080c
obo:APOLLO_SV_00000255c
obo:APOLLO_SV_00000081c
obo:APOLLO_SV_00000256c
obo:APOLLO_SV_00000078c
obo:APOLLO_SV_00000036c
obo:APOLLO_SV_00000257c
obo:APOLLO_SV_00000254c

discrete nonparametric probability distributionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000252
Super-classes obo:APOLLO_SV_00000249c

continuous nonparametric probability distributionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000253
Super-classes obo:APOLLO_SV_00000249c

log normal distributionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000254
Super-classes obo:APOLLO_SV_00000251c

gamma distributionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000255
Super-classes obo:APOLLO_SV_00000251c

Weibull Distributionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000256
Super-classes obo:APOLLO_SV_00000251c

continuous uniform distributionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000257
Super-classes obo:APOLLO_SV_00000251c

delay from symptoms to treatmentc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000258
Super-classes obo:APOLLO_SV_00000243c

apollo location codec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000259
Super-classes obo:IAO_0020000c

control strategy stop time informationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000260
Super-classes obo:IAO_0000030c

infectious disease control strategy trigger definitionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000261
Super-classes obo:IAO_0000055c
Sub-classes obo:APOLLO_SV_00000270c
obo:APOLLO_SV_00000271c
obo:APOLLO_SV_00000269c

contamination probabilityc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000262
Super-classes obo:APOLLO_SV_00000470c

control strategy stand-down delayc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000263
Super-classes obo:IAO_0000109c

infection acquisition from contaminated thingc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000264
Super-classes obo:GO_0044409c

infection acquisition from infectious hostc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000265
Super-classes obo:GO_0044409c
Sub-classes obo:APOLLO_SV_00000511c
obo:APOLLO_SV_00000521c

disease surveillance capabilityc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000266
Description

Specifies location, pathogen, host taxon, caseDefinition, sensitivity, specificity, and time delay of case detection

Super-classes obo:BFO_0000016c

time delay to case detectionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000267
Super-classes obo:APOLLO_SV_00000243c

time scale namec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000268
Super-classes obo:IAO_0020000c

disease surveillance trigger definitionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000269
Super-classes obo:APOLLO_SV_00000261c

treatment surveillance trigger definitionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000270
Super-classes obo:APOLLO_SV_00000261c

temporal trigger definitionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000271
Super-classes obo:APOLLO_SV_00000261c

time since time scale zeroc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000272
Super-classes obo:APOLLO_SV_00000243c

seasonal function parameterc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000273
Super-classes obo:IAO_0000030c
Sub-classes obo:APOLLO_SV_00000275c
obo:APOLLO_SV_00000276c
obo:APOLLO_SV_00000274c

maximum seasonal latitudec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000274
Super-classes obo:APOLLO_SV_00000273c

minimum seasonal latitudec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000275
Super-classes obo:APOLLO_SV_00000273c

seasonal temporal offsetc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000276
Super-classes obo:APOLLO_SV_00000273c

sensitivity of case detectionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000277
Super-classes obo:STATO_0000233c

probability of entry into a country is deniedc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000278
Super-classes obo:APOLLO_SV_00000470c

probability of exit from a country is deniedc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000279
Super-classes obo:APOLLO_SV_00000470c

duration of treatment coursec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000280
Super-classes obo:APOLLO_SV_00000243c
Restrictions obo:IAO_0000136op some (obo:BFO_0000038c and ub209bL4214C17c)

number of doses in a treatment coursec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000281
Super-classes obo:APOLLO_SV_00000032c
Restrictions obo:IAO_0000136op some obo:OGMS_0000090c

target populations and prioritizations informationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000282
Super-classes obo:IAO_0000030c

school transmission multiplierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000283
Super-classes obo:APOLLO_SV_00000793c

household transmission multiplierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000284
Super-classes obo:APOLLO_SV_00000793c

workplace transmission multiplierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000285
Super-classes obo:APOLLO_SV_00000793c

close individual places independently strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000286
Super-classes obo:APOLLO_SV_00000229c

place closure periodc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000287
Super-classes obo:APOLLO_SV_00000243c

community transmission multiplierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000288
Super-classes obo:APOLLO_SV_00000793c

maximum travel distance in km informationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000289
Super-classes obo:IAO_0000030c

treatment preventable outcomec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000290
Super-classes obo:IAO_0000005c

time delay of treatment detectionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000291
Super-classes obo:APOLLO_SV_00000243c

individual treatment strategy supply schedule unit of measurec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000292
Super-classes obo:UO_0000000c

individual treatment strategy administration capacity unit of measurec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000293
Super-classes obo:UO_0000000c

agent-based disease transmission modelc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000294
Super-classes obo:APOLLO_SV_00000174c

reactive control strategy threshold unit of measurec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000295
Super-classes obo:UO_0000000c

case definitionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000296
Super-classes obo:IAO_0000030c

obsolete quarantine periodc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000297
Super-classes obo:APOLLO_SV_00000243c

epidemicc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000298
Description

An example of multiple host species is foot and mouth disease (such as the 2001 epidemic in the UK, see: http://www.sciencemag.org/content/292/5519/1155.long) and swine flu. The foot and mouth disease epidemic affected sheep, pigs, and cattle.

Super-classes obo:APOLLO_SV_00000306c
(ub209bL4387C29c and ub209bL4392C13c)

immune organism that acts like it is immunec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000299
Super-classes obo:APOLLO_SV_00000206c

immune organism that acts like it is not immunec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000300
Super-classes obo:APOLLO_SV_00000206c

naturally-acquired active immune resistancec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000301
Super-classes obo:APOLLO_SV_00000151c

recovered organismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000302
Super-classes obo:OBI_0100026c

compartmental disease transmission modelc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000303
Super-classes obo:APOLLO_SV_00000174c
Sub-classes obo:APOLLO_SV_00000549c
obo:APOLLO_SV_00000551c
obo:APOLLO_SV_00000548c

anti-infective individual treatment control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000304
Super-classes obo:APOLLO_SV_00000194c
Sub-classes obo:APOLLO_SV_00000305c
obo:APOLLO_SV_00000181c

anti-bacterial control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000305
Super-classes obo:APOLLO_SV_00000304c

infection in ecosystemc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000306
Super-classes obo:BFO_0000015c
Restrictions obo:BFO_0000118op some obo:APOLLO_SV_00000114c
obo:BFO_0000118op some obo:APOLLO_SV_00000115c
Sub-classes obo:APOLLO_SV_00000298c
obo:APOLLO_SV_00000331c
obo:APOLLO_SV_00000307c

endemicc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000307
Super-classes obo:APOLLO_SV_00000306c

vector control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000308
Description

Typically, the strategy is to limit the population of the second host species, which is called the "vector" for the infection.

Super-classes obo:APOLLO_SV_00000086c
Sub-classes obo:APOLLO_SV_00000478c
obo:APOLLO_SV_00000390c
obo:APOLLO_SV_00000414c
obo:APOLLO_SV_00000391c
obo:APOLLO_SV_00000328c
obo:APOLLO_SV_00000392c

abiotic ecosystem censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000309
Super-classes obo:APOLLO_SV_00000173c
Sub-classes obo:APOLLO_SV_00000315c

vector control action specificationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000310
Super-classes obo:APOLLO_SV_00000794c
Sub-classes obo:APOLLO_SV_00000466c
obo:APOLLO_SV_00000426c
obo:APOLLO_SV_00000465c
obo:APOLLO_SV_00000467c

Breteau Indexc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000311
Super-classes obo:OBI_0000679c

individual mosquito reproductionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000312
Super-classes obo:GO_0032504c

gonotrophic cycle durationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000313
Super-classes obo:APOLLO_SV_00000243c

gonotrophic cyclec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000314
Super-classes obo:GO_0008150c

oviposition site censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000315
Super-classes obo:APOLLO_SV_00000309c

obsolete carrying capacity per housec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000316
Super-classes obo:OBI_0000679c

incubation periodc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000317
Super-classes obo:BFO_0000015c
Restrictions obo:BFO_0000050op some (obo:BFO_0000015c and ub209bL4655C17c)

drug treatmentc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000318
Super-classes obo:OGMS_0000090c
Sub-classes obo:APOLLO_SV_00000171c

voluntary household quarantine control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000322
Super-classes obo:APOLLO_SV_00000086c

liberal sick leave control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000323
Super-classes obo:APOLLO_SV_00000086c

epidemic investigation designc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000326
Super-classes obo:OBI_0500000c

quarantine control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000327
Super-classes obo:APOLLO_SV_00000086c

larvicide control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000328
Super-classes obo:APOLLO_SV_00000308c
Sub-classes obo:APOLLO_SV_00000416c

colonizationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000330
Description

Primary use case is colonization of humans, animals with Staph aureus, but it also covers bacteriuria, transient bactermia, and normal gut flora.

Super-classes obo:GO_0000003c

infection in populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000331
Super-classes obo:APOLLO_SV_00000306c

colonization acquisitionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000332
Description

the host organism was not colonized wtih the pathogen prior to the colonization acquisition

Super-classes obo:GO_0044409c

decolonization control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000333
Description

typically the pathogen is a bacterium

Super-classes obo:APOLLO_SV_00000194c

infection acquistion from self colonizationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000334
Super-classes obo:GO_0044409c

chemical resistance to infectionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000335
Description

As with all dispositions, chemical resistance need not be realized to exist. The presence of cholorquine confers this disposition even if the person is never bitten by a mosquito, let alone a malaria-laden mosquito.

Super-classes obo:APOLLO_SV_00000145c
(obo:APOLLO_SV_00000145c and ub209bL4894C13c)

resistance to malaria infectionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000336
Super-classes obo:APOLLO_SV_00000145c

ectosymbiosisc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000337
Description

It includes situations where one organism lives on the surface of the other organism.

Super-classes obo:APOLLO_SV_00000596c
Sub-classes obo:APOLLO_SV_00000340c
obo:APOLLO_SV_00000339c
obo:APOLLO_SV_00000338c
obo:APOLLO_SV_00000351c
obo:APOLLO_SV_00000348c

antagonismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000338
Description

Example: competition between lions and hyenas for food

Super-classes obo:APOLLO_SV_00000337c

amensalismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000339
Description

Example: Spanish ibex and weevils of the genus Timarcha

Super-classes obo:APOLLO_SV_00000337c

agonismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000340
Super-classes obo:APOLLO_SV_00000337c
Sub-classes obo:APOLLO_SV_00000341c
obo:APOLLO_SV_00000356c

intimate agonismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000341
Super-classes obo:APOLLO_SV_00000340c
Sub-classes obo:APOLLO_SV_00000345c
obo:APOLLO_SV_00000342c

ectosymbiotic parasitismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000342
Description

Example: Temnocephala chilensis and various marine wildlife

Super-classes obo:APOLLO_SV_00000341c
Sub-classes obo:APOLLO_SV_00000344c
obo:APOLLO_SV_00000343c

facultative ectosymbiotic parasitismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000343
Description

Example: Armillaria (type of wood fungus) and trees

Super-classes obo:APOLLO_SV_00000342c

obligatory ectosymbiotic parasitismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000344
Description

Example: European common cuckoo and other bird species (brood parasitism)

Super-classes obo:APOLLO_SV_00000342c

ectosymbiotic parasitoidismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000345
Super-classes obo:APOLLO_SV_00000341c
Sub-classes obo:APOLLO_SV_00000346c
obo:APOLLO_SV_00000347c

facultative ectosymbiotic parasitoidismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000346
Description

Example: Pachycrepoideus dubius and Ceratitis capitata

Super-classes obo:APOLLO_SV_00000345c

obligatory ectosymbiotic parasitoidismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000347
Description

Example: Mutillidae (family of wasps) and other wasps/ants

Super-classes obo:APOLLO_SV_00000345c

ectosymbiotic commensalismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000348
Super-classes obo:APOLLO_SV_00000337c
Sub-classes obo:APOLLO_SV_00000349c
obo:APOLLO_SV_00000350c

facultative ectosymbiotic commensalismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000349
Description

Example: Ophiodromus pugettensis and Patiria miniata

Super-classes obo:APOLLO_SV_00000348c

obligatory ectosymbiotic commensalismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000350
Description

Example: Basicladia algae and sea turtles

Super-classes obo:APOLLO_SV_00000348c

ectosymbiotic mutualismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000351
Super-classes obo:APOLLO_SV_00000337c
Sub-classes obo:APOLLO_SV_00000353c
obo:APOLLO_SV_00000352c

facultative ectosymbiotic mutualismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000352
Description

Example: ants that feed off of honeydew from aphids, and in turn protect the aphids

Super-classes obo:APOLLO_SV_00000351c

obligatory ectosymbiotic mutualismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000353
Description

Example: bees and flowers

Super-classes obo:APOLLO_SV_00000351c

endosymbiosisc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000354
Super-classes obo:APOLLO_SV_00000596c
Sub-classes obo:APOLLO_SV_00000355c
obo:APOLLO_SV_00000367c
obo:APOLLO_SV_00000364c
obo:APOLLO_SV_00000361c

endosymbiotic parasitismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000355
Super-classes obo:APOLLO_SV_00000354c
Sub-classes obo:APOLLO_SV_00000360c
obo:APOLLO_SV_00000359c

transient agonismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000356
Super-classes obo:APOLLO_SV_00000340c
Sub-classes obo:APOLLO_SV_00000358c
obo:APOLLO_SV_00000357c

predationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000357
Description

Example: lion and gazel

Super-classes obo:APOLLO_SV_00000356c

grazingc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000358
Description

Example: Giant panda and bamboo

Super-classes obo:APOLLO_SV_00000356c

facultative endosymbiotic parasitismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000359
Description

Example: Strongyloides stercoralis (roundworm) and humans

Super-classes obo:APOLLO_SV_00000355c

obligatory endosymbiotic parasitismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000360
Description

Example: Necator americanus (hookworm) and humans

Super-classes obo:APOLLO_SV_00000355c

endosymbiotic parasitoidismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000361
Super-classes obo:APOLLO_SV_00000354c
Sub-classes obo:APOLLO_SV_00000362c
obo:APOLLO_SV_00000363c

facultative endosymbiotic parasitoidismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000362
Description

Example: Naegleria fowleri (brain-eating amoeba) and humans

Super-classes obo:APOLLO_SV_00000361c

obligatory endosymbiotic parasitoidismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000363
Description

Example: Ichneumon eumerus (wasp) and Phengaris rebeli (butterfly caterpillar)

Super-classes obo:APOLLO_SV_00000361c

endosymbiotic commensalismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000364
Super-classes obo:APOLLO_SV_00000354c
Sub-classes obo:APOLLO_SV_00000365c
obo:APOLLO_SV_00000366c

facultative endosymbiotic commensalismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000365
Description

Example: Malaria and mosquito vector

Super-classes obo:APOLLO_SV_00000364c

obligatory endosymbiotic commensalismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000366
Description

Example: Passalurus ambiguus (nematode) and rabbits

Super-classes obo:APOLLO_SV_00000364c

endosymbiotic mutualismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000367
Super-classes obo:APOLLO_SV_00000354c
Sub-classes obo:APOLLO_SV_00000369c
obo:APOLLO_SV_00000368c

facultative endosymbiotic mutualismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000368
Description

Example: Hamiltonella defensa and aphids

Super-classes obo:APOLLO_SV_00000367c

obligatory endosymbiotic mutualismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000369
Description

Example: marine worms of genus Riftia and their endosymbiotic bacteria

Super-classes obo:APOLLO_SV_00000367c

deprecated homeostasisc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000370
Super-classes obo:BFO_0000016c

bodily harmc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000371
Super-classes obo:BFO_0000015c

bodily benefitc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000372
Super-classes obo:BFO_0000015c

parasitec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000373
Super-classes obo:OBI_0100026c

parasitoidc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000374
Super-classes obo:OBI_0100026c

target population definitionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000375
Super-classes obo:IAO_0000030c

name of a temporal boundaryc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000376
Super-classes obo:APOLLO_SV_00000395c

location definitionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000377
Super-classes obo:IAO_0000030c

treatment contraindicationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000378
Super-classes obo:OAE_0000055c

uncertain durationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000379
Super-classes obo:APOLLO_SV_00000243c

fraction of contaminated thingc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000380
Super-classes obo:IAO_0000109c

specificity of case detectionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000381
Super-classes obo:STATO_0000134c

specificity of treatment detectionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000382
Super-classes obo:STATO_0000134c

sensitivity of treatment detectionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000383
Super-classes obo:STATO_0000233c

fixed durationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000384
Super-classes obo:APOLLO_SV_00000243c

real time span category definitionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000385
Super-classes obo:APOLLO_SV_00000242c

real date span category definitionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000386
Super-classes obo:APOLLO_SV_00000242c

census objective specificationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000387
Super-classes obo:IAO_0000005c

census plan specificationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000388
Super-classes obo:IAO_0000104c

census takingc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000389
Super-classes obo:OBI_0000011c

Wolbachia vector control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000390
Super-classes obo:APOLLO_SV_00000308c

indoor residual spraying vector control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000391
Super-classes obo:APOLLO_SV_00000308c

container reduction vector control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000392
Super-classes obo:APOLLO_SV_00000308c

treatment system logisticsc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000393
Super-classes obo:IAO_0000030c

treatment surveillance capabilityc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000394
Super-classes obo:BFO_0000016c

name of temporal regionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000395
Super-classes obo:IAO_0020000c
Sub-classes obo:APOLLO_SV_00000376c
obo:APOLLO_SV_00000242c
obo:APOLLO_SV_00000429c

population serology surveyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000396
Super-classes obo:APOLLO_SV_00000152c

infection case listc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000397
Super-classes obo:IAO_0000100c

infection case recordc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000398
Super-classes obo:IAO_0000100c

deprecated infection case countc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000399
Super-classes obo:IAO_0000027c

epidemic intervalc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000400
Super-classes obo:BFO_0000038c

individual mosquito behaviorc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000401
Super-classes obo:GO_0007610c

individual human behaviorc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000402
Super-classes obo:GO_0007610c
Sub-classes obo:APOLLO_SV_00000601c
obo:APOLLO_SV_00000546c

transmission treec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000403
Description

This definition allows for multiple trees in an epidemic because we did not require that the first case infected temporally be the index case, although the ideal situation is that there is one tree for the epidemic that includes the index case.

Super-classes obo:OBI_0000658c

infectiousnessc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000404
Description

The disposition of Influenza A virus H3N2 subtype to infect human beings, the disposition of Plasmodium vivax to infect mosquitos and humans, the disposition of foot and mouth disease virus to infect cloven-hooved animals (sheep, cows, pigs, etc.).

Super-classes obo:BFO_0000016c

potentially infectious contactingc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000405
Super-classes obo:GO_0008150c

potentially infectious contact rolec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000406
Description

The organism bearing this role is the organism at risk for acquiring an infection when the role is realized. Also, this role differentiates participants in a process when there are two organisms participating, so it only begins to exist during its realization, justifying its existential restriction.

Super-classes obo:BFO_0000023c

contacted organismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000407
Super-classes obo:OBI_0100026c

contact definitionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000408
Super-classes obo:IAO_0000030c

ring individual treatment control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000409
Super-classes obo:APOLLO_SV_00000194c

Wolbachia release sitec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000410
Super-classes obo:APOLLO_SV_00000464c

Wolbachia every nth site release action specificationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000411
Super-classes obo:APOLLO_SV_00000466c

leakage rate of Wolbachia infection in mosquito population infected with Wolbachiac # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000412
Super-classes obo:OBI_0001554c

transmission rate of pathogen to human from Wolbachia-infected mosquito bitesc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000413
Super-classes obo:OBI_0001554c

adult vector control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000414
Super-classes obo:APOLLO_SV_00000308c
Sub-classes obo:APOLLO_SV_00000415c
obo:APOLLO_SV_00000499c
obo:APOLLO_SV_00000572c

Wolbachia prerelease adult vector control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000415
Super-classes obo:APOLLO_SV_00000414c

Wolbachia prerelease larvicide vector control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000416
Super-classes obo:APOLLO_SV_00000328c

life stages with duration and mortalityc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000417
Super-classes obo:OBI_0000658c

Wolbachia effect on egg mortality rate in mosquito populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000418
Super-classes obo:GO_0051701c

Wolbachia effect on adult mortality rate in mosquito populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000419
Super-classes obo:GO_0051701c

Wolbachia effect on larval mortality rate in mosquito populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000420
Super-classes obo:GO_0051701c

Wolbachia effect on female fecundity in mosquito populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000421
Super-classes obo:GO_0051701c

confidence intervalc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000422
Super-classes obo:IAO_0000027c

Wolbachia release intervalc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000423
Super-classes obo:APOLLO_SV_00000465c

mean with confidence intervalc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000424
Super-classes obo:OBI_0000658c

mean with standard deviationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000425
Super-classes obo:OBI_0000658c

number of Wolbachia-infected mosquitoes released per housec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000426
Super-classes obo:APOLLO_SV_00000310c

clear Wolbachia upon vector migrationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000427
Super-classes obo:APOLLO_SV_00000793c

disease outcome with probabilityc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000428
Super-classes obo:OBI_0302867c

datec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000429
Super-classes obo:APOLLO_SV_00000395c

ring diameter in metersc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000430
Super-classes obo:OBI_0001931c

Wolbachia effect on mating probabilityc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000431
Super-classes obo:APOLLO_SV_00000793c

minimum valuec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000432
Super-classes obo:IAO_0000027c

maximum valuec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000433
Super-classes obo:IAO_0000027c

statistical confidencec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000434
Super-classes obo:OBI_0302867c

closure periodc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000435
Super-classes obo:BFO_0000038c

lower boundc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000436
Super-classes obo:IAO_0000030c

fraction of vector adults affectedc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000437
Super-classes obo:IAO_0000109c

fraction reduction of eggsc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000438
Super-classes obo:IAO_0000109c

fraction reduction of larvaec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000439
Super-classes obo:IAO_0000109c

vector bite radiusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000440
Super-classes obo:IAO_0000408c

time between vector bitesc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000441
Super-classes obo:APOLLO_SV_00000243c

migration speedc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000442
Super-classes obo:OBI_0001554c

shade affinityc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000443
Super-classes obo:APOLLO_SV_00000470c

movement speedc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000444
Super-classes obo:OBI_0001554c

mortality ratec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000445
Super-classes obo:OBI_0001554c

ratio of outdoor to indoor ovisitesc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000446
Super-classes obo:IAO_0000027c

upper boundc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000447
Super-classes obo:IAO_0000030c

standard deviationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000448
Super-classes obo:IAO_0000027c

quarantine periodc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000449
Super-classes obo:APOLLO_SV_00000243c

mosquito mating probabilityc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000450
Super-classes obo:APOLLO_SV_00000470c

affinity for buildingsc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000451
Super-classes obo:APOLLO_SV_00000470c

linear distance travelled between ovipositsc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000452
Super-classes obo:APOLLO_SV_00000793c

eggs per broodc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000453
Super-classes obo:OBI_0000679c

efficacyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000454
Description

We often say in natural language it is the efficacy of the triggering planned process such as vaccination. However, processes do not have properties such as roles, dispositions, functions, qualities in BFO. And this is also not a process profile, because it is not the process of a quality changing values (determinates) over time. Nevertheless, it is natural to classify efficacies based on the type of triggering process because that is what differentiates what happens when they are realized. For example, a vaccination efficacy will be realized through different processes than a quarantine efficacy. For individual treatments, the triggering process is a treatment (as defined by OGMS).

Super-classes obo:BFO_0000016c
Sub-classes obo:APOLLO_SV_00000502c

prodromal periodc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000455
Super-classes obo:BFO_0000015c

fulminant periodc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000456
Description

Although it is often or even typically preceded by a prodromal period, it is not always the case. Therefore "immediately preceded by some prodromal period" cannot be a necessary condition.

Super-classes obo:BFO_0000015c

vector bite probabilityc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000457
Super-classes obo:APOLLO_SV_00000470c

male mosquito mating radiusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000458
Super-classes obo:IAO_0000408c

infectious disease control strategy cover radiusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000459
Super-classes obo:IAO_0000408c

species of treated organismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000460
Super-classes obo:APOLLO_SV_00000509c

drug identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000461
Super-classes obo:IAO_0020000c

mean median minimum maximum summary statistics data structurec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000462
Super-classes obo:OBI_0000658c

heterogenous carrying capacityc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000463
Super-classes obo:IAO_0000001c

seed sitec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000464
Description

Class was originally created to correspond with an element from Apollo XSD v3.1.0.

Super-classes obo:BFO_0000029c
Sub-classes obo:APOLLO_SV_00000410c

seed release intervalc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000465
Description

Class was originally created to correspond with an element from Apollo XSD v3.1.0.

Super-classes obo:APOLLO_SV_00000310c
Sub-classes obo:APOLLO_SV_00000423c

vector release site action specificationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000466
Description

Class was originally created to correspond with an element from Apollo XSD v3.1.0.

Super-classes obo:APOLLO_SV_00000310c
Sub-classes obo:APOLLO_SV_00000411c

number of artificially-infected vectors released per housec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000467
Description

Class was originally created to correspond with an element from Apollo XSD v3.1.0.

Super-classes obo:APOLLO_SV_00000310c

clear infection upon vector migrationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000468
Description

Class was originally created to correspond with an element from Apollo XSD v3.1.0.

Super-classes obo:APOLLO_SV_00000793c

SNOMED concept identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000469
Super-classes obo:IAO_0020000c

probabilityc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000470
Description

The first criterion is derived from Kolmogorov's Probability Calculus, while the second is derived from Salmon's Admissibility and Applicability Criteria of Adequacy. Salmon's ascertainability criterion is subsumed by the definition for 'data item'.

Super-classes obo:IAO_0000027c
Sub-classes obo:APOLLO_SV_00000529c
obo:APOLLO_SV_00000278c
obo:APOLLO_SV_00000211c
obo:APOLLO_SV_00000443c
obo:APOLLO_SV_00000457c
obo:APOLLO_SV_00000451c
obo:APOLLO_SV_00000450c
obo:APOLLO_SV_00000262c
obo:APOLLO_SV_00000279c

minimum eggs per oviposition sitec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000471
Super-classes obo:APOLLO_SV_00000793c

age-dependent fecundity reductionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000472
Super-classes obo:OBI_0001554c

carrying capacity per housec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000473
Description

Mosquitos can sense eggs in ovisite so tend to lay in places not at max.

Super-classes obo:APOLLO_SV_00000793c

reactive control measure operatorc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000474
Super-classes obo:APOLLO_SV_00000793c

gonotrophic period durationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000475
Super-classes obo:IAO_0000416c

descriptionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000476
Super-classes obo:IAO_0000300c

parametric probability distributionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000477
Super-classes obo:APOLLO_SV_00000215c
Sub-classes obo:APOLLO_SV_00000251c
obo:APOLLO_SV_00000250c

seed infections into vector population control measurec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000478
Description

Class was originally created to correspond with a complex type from Apollo XSD v3.1.0.

Super-classes obo:APOLLO_SV_00000308c

ovisite carrying capacityc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000479
Super-classes obo:OBI_0302867c

geographical migration of organismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000480
Super-classes obo:GO_0007610c
Sub-classes obo:APOLLO_SV_00000532c

cut-off point specificationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000481
Super-classes obo:IAO_0000007c

prodromal period durationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000482
Super-classes obo:APOLLO_SV_00000243c

fulminant period durationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000483
Super-classes obo:APOLLO_SV_00000243c

identifier of species of diseased organismc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000484
Super-classes obo:APOLLO_SV_00000509c

identifier for species of casec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000485
Super-classes obo:APOLLO_SV_00000509c

travel-related infectious disease control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000486
Super-classes obo:APOLLO_SV_00000086c
Sub-classes obo:APOLLO_SV_00000487c
obo:APOLLO_SV_00000228c
obo:APOLLO_SV_00000231c

travel recommendation control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000487
Super-classes obo:APOLLO_SV_00000486c

contact isolation control measurec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000489
Super-classes obo:APOLLO_SV_00000230c

colonization durationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000490
Super-classes obo:APOLLO_SV_00000243c

identifier of species of populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000491
Super-classes obo:APOLLO_SV_00000509c

RxNorm drug concept identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000492
Super-classes obo:IAO_0020000c

LOINC identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000493
Super-classes obo:IAO_0020000c
Sub-classes obo:APOLLO_SV_00000494c

laboratory test LOINC identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000494
Super-classes obo:APOLLO_SV_00000493c

PubMed identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000495
Super-classes obo:IAO_0020000c

ORCIDc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000496
Super-classes obo:IAO_0020000c

count of disease casesc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000497
Super-classes obo:APOLLO_SV_00000032c
Sub-classes obo:APOLLO_SV_00000498c

count of cases in an epidemicc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000498
Super-classes obo:APOLLO_SV_00000497c

insecticide-treated net control measurec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000499
Super-classes obo:APOLLO_SV_00000414c

schedulec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000500
Super-classes obo:IAO_0000104c
Sub-classes obo:APOLLO_SV_00000213c

population colonization censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000501
Super-classes obo:APOLLO_SV_00000153c

drug treatment efficacyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000502
Description

While we understand that 'drug efficacy' can have multiple interpretations, this class is specifically referring to drug efficacy in the context of clinical outcomes. As such, our definition excludes any mention of efficacy as it relates to pharmacodynamics.

Super-classes obo:APOLLO_SV_00000454c

latitude and longitude coordinate pairc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000503
Super-classes obo:GEO_000000788c

age in years datumc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000504
Super-classes obo:IAO_0000416c

contamination period durationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000505
Super-classes obo:APOLLO_SV_00000243c

healthcare facility identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000506
Super-classes obo:APOLLO_SV_00000508c

disease transmission model identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000507
Super-classes obo:IAO_0020000c

facility identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000508
Super-classes obo:IAO_0020000c
Sub-classes obo:APOLLO_SV_00000506c

taxonomy identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000509
Super-classes obo:IAO_0020000c
Sub-classes obo:APOLLO_SV_00000203c
obo:APOLLO_SV_00000484c
obo:APOLLO_SV_00000232c
obo:APOLLO_SV_00000460c
obo:APOLLO_SV_00000491c
obo:APOLLO_SV_00000485c

disease case identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000510
Super-classes obo:IAO_0020000c

infection acquisition through sexual activity with infectious hostc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000511
Description

Note that infections that are acquired in this manner do not fall within the class of sexually transmitted infections (STI's), ipso facto. This type of transmission can also occur with non-STI pathogens--such as meningitis and Zika.

Super-classes obo:APOLLO_SV_00000265c

rate of hydrological precipitationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000512
Super-classes obo:OBI_0001554c

mean rate of hydrological precipitationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000513
Super-classes obo:OBI_0000679c

mean air temperaturec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000514
Super-classes obo:OBI_0000679c

potentially infectious sexual contactingc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000515
Super-classes obo:NBO_0000034c

host populationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000516
Super-classes obo:PCO_0000001c
Sub-classes obo:APOLLO_SV_00000234c
obo:APOLLO_SV_00000235c
obo:APOLLO_SV_00000163c
obo:APOLLO_SV_00000156c
obo:APOLLO_SV_00000154c
obo:APOLLO_SV_00000233c

prioritization scheme for control measurec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000517
Super-classes obo:IAO_0000007c

one-way sensitivity analysis of a continuous variablec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000518
Description

Class was originally created to correspond with a complex type from Apollo XSD v3.1.0.

Super-classes obo:OBI_0200000c

citation identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000519
Super-classes obo:IAO_0020000c

location of sampling processc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000520
Super-classes obo:GEO_000000372c

infection acquisition from vertical transmissionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000521
Super-classes obo:APOLLO_SV_00000265c

source code repositoryc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000522
Description

Refers to the stuff that lives on GitHub, not to GitHub or the git software on which it is based

Super-classes obo:IAO_0000100c

compiling softwarec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000524
Description

It's compiling "software" (scare quotes) and not "source code" because you can compile Java bytecode to machine code, and Java bytecode is not technically "source code". Compiling source code would be a subclass of this class (as would compiling Java bytecode, etc.).

Super-classes obo:OBI_0000011c

compiled software codec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000525
Super-classes obo:IAO_0000010c

scale-free network modelc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000526
Super-classes obo:IAO_0000064c

scale-free networkc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000527
Super-classes obo:OBI_0000714c

synthetic ecosystem data setc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000528
Description

The interactions between each organism as they move between these facilities may also be included in the data set.

Super-classes obo:IAO_0000100c
Restrictions obo:IAO_0000136op some obo:APOLLO_SV_00000097c

conditional probabilityc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000529
Super-classes obo:APOLLO_SV_00000470c
Sub-classes obo:APOLLO_SV_00000530c

probability of infection over timec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000530
Super-classes obo:APOLLO_SV_00000529c

epidemic thresholdc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000531
Super-classes obo:IAO_0000027c

human travelc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000532
Super-classes obo:APOLLO_SV_00000480c
Sub-classes obo:APOLLO_SV_00000533c

human air travelc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000533
Super-classes obo:APOLLO_SV_00000532c

human mobility data itemc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000534
Super-classes obo:IAO_0000027c

software licensec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000535
Super-classes obo:APOLLO_SV_00000798c

complete software license identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000536
Super-classes obo:IAO_0020000c

software license version identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000537
Super-classes obo:IAO_0020000c

software license identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000538
Super-classes obo:IAO_0020000c

software license URLc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000539
Super-classes obo:OMIABIS_0000019c

population dynamics modelc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000540
Super-classes obo:APOLLO_SV_00000007c

disease surveillance objective specificationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000541
Super-classes obo:IAO_0000005c

mortality datac # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000542
Super-classes obo:IAO_0000100c
Restrictions obo:IAO_0000136op some obo:PCO_0000001c

pathogen evolution modelc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000544
Super-classes obo:APOLLO_SV_00000007c

disease surveillancec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000545
Super-classes obo:OBI_0000011c

self-initiated travel avoidance behaviorc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000546
Super-classes obo:APOLLO_SV_00000402c

social interaction data itemc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000547
Super-classes obo:IAO_0000027c

Susceptible-Infected-Susceptible modelc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000548
Super-classes obo:APOLLO_SV_00000303c

Susceptible-Infected-Resistant modelc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000549
Super-classes obo:APOLLO_SV_00000303c
Sub-classes obo:APOLLO_SV_00000553c

contact tracingc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000550
Super-classes obo:APOLLO_SV_00000086c

Susceptible-Exposed-Infectious-Recovered modelc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000551
Super-classes obo:APOLLO_SV_00000303c

metapopulation disease transmission modelc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000552
Super-classes obo:APOLLO_SV_00000174c

two-strain Susceptible-Infectious-Resistant modelc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000553
Super-classes obo:APOLLO_SV_00000549c

disease surveillance datac # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000554
Super-classes obo:IAO_0000100c
Restrictions obo:OBI_0000312op some obo:APOLLO_SV_00000545c

disease transmission tree estimatorc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000555
Super-classes obo:IAO_0000594c

mechanical flight functionc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000556
Super-classes obo:BFO_0000034c

infectious disease forecasterc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000557
Super-classes obo:APOLLO_SV_00000007c
Sub-classes obo:APOLLO_SV_00000583c

case seriesc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000558
Super-classes obo:OBI_0000066c

case series data setc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000559
Super-classes obo:IAO_0000100c
Restrictions obo:OBI_0000312op some obo:APOLLO_SV_00000558c

epidemic data setc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000560
Super-classes obo:IAO_0000100c

disease transmission model softwarec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000561
Super-classes obo:APOLLO_SV_00000007c

data format converterc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000562
Super-classes obo:IAO_0000594c

phylogenetic tree constructorc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000563
Super-classes obo:IAO_0000594c

data visualizerc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000564
Super-classes obo:IAO_0000594c

computational modeling toolkitc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000565
Super-classes obo:IAO_0000594c

data parsingc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000566
Super-classes obo:OBI_0200000c
Restrictions obo:OBI_0000293op some obo:IAO_0000100c

synthetic ecosystem constructorc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000567
Description

example: Synthia, SPEW

Super-classes obo:IAO_0000010c

total fatal disease casesc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000568
Super-classes obo:IAO_0000027c

total disease casesc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000569
Super-classes obo:IAO_0000027c

employment status data itemc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000570
Description

If an individual is a member of the labor force, the criteria that this status is selected from includes whether they are in the armed forces, employed and working, employed but absent from work for a week, and unemployed. The criteria for those not in the labor force includes whether the individual is a houseworker, suffering from a physical impairment that prevents them from working, in school, or other miscellaneous reasons.

Super-classes obo:IAO_0000027c

contaminated abiotic thingc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000571
Super-classes obo:APOLLO_SV_00000220c

odor-baited trap control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000572
Super-classes obo:APOLLO_SV_00000414c

zoo-prophylaxis control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000573
Super-classes obo:APOLLO_SV_00000086c

acute respiratory illnessc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000574
Super-classes obo:OGMS_0000027c

epidemic start weekc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000575
Super-classes obo:OBI_0001931c

epidemic peak weekc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000576
Super-classes obo:OBI_0001931c

epidemic peak intensityc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000577
Super-classes obo:OBI_0302867c

aggregate of disease coursesc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000578
Super-classes obo:BFO_0000015c

infectious disease forecastc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000579
Super-classes obo:OBI_0000011c
Sub-classes obo:APOLLO_SV_00000584c
obo:APOLLO_SV_00000580c

infectious disease nowcastc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000580
Super-classes obo:APOLLO_SV_00000579c
Sub-classes obo:APOLLO_SV_00000585c

infectious disease forecast objective specificationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000581
Super-classes obo:IAO_0000005c
Sub-classes obo:APOLLO_SV_00000582c

infectious disease nowcast objective specificationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000582
Super-classes obo:APOLLO_SV_00000581c

infectious disease nowcasterc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000583
Super-classes obo:APOLLO_SV_00000557c

prospective infectious disease forecastc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000584
Super-classes obo:APOLLO_SV_00000579c

prospective infectious disease nowcastc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000585
Super-classes obo:APOLLO_SV_00000580c

infectious disease forecast time specificationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000586
Super-classes obo:IAO_0000007c

intensive care unit encounterc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000587
Super-classes obo:OGMS_0000100c

data visualization objective specificationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000588
Super-classes obo:IAO_0000005c

treatment in the ICU control strategyc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000589
Super-classes obo:APOLLO_SV_00000194c

website with datac # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000590
Description

This class was created for use case for MIDAS Digital Repository to index websites that have useful data in them, albeit rarely as machine-interpretable, downloadable datasets. Much of the data are locked in PDF or other text-based formats.

Super-classes obo:FBcv_0000667c

climate data setc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000591
Super-classes obo:IAO_0000100c

A software application that has as part an objective specification that is achieved by only a metagenomics analysis.c # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000592
Super-classes obo:IAO_0000594c

abiotic ecosystem data setc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000593
Super-classes obo:IAO_0000100c
Sub-classes obo:APOLLO_SV_00000594c

atmospheric data setc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000594
Super-classes obo:APOLLO_SV_00000593c

treatment facility censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000595
Description

NOTE: this class counts the facilities themselves, not patients (people) in those facilities. For example, how many hospitals in a state. Not how many patients are in a hospital or hospitals in a state.

Super-classes (obo:APOLLO_SV_00000173c and ub209bL8177C13c)
obo:APOLLO_SV_00000173c

symbiosisc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000596
Description

By "intimate interaction," we mean any interaction between two or more organisms that involves (1) physical contact or (2) multi-organism behavior in which all interacting organisms are participant.

Super-classes obo:GO_0044419c
Sub-classes obo:APOLLO_SV_00000337c
obo:APOLLO_SV_00000354c

data format validatorc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000597
Super-classes obo:IAO_0000594c

disease identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000598
Super-classes obo:IAO_0020000c
Sub-classes obo:APOLLO_SV_00000244c

infection acquisition datasetc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000599
Description

The dataset may include sites (e.g. types of facilities, rooms), events (e.g., church service whether in or outdoors), dates, times, geographical regions, etc. in which the sites/events are located, and so on.

Super-classes obo:IAO_0000100c

hospital stay datasetc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000600
Description

The dataset may be limited to stays in one hospital, but hospital discharge datasets as compiled by state departments of health typically contain stays from multiple hospitals (typically every hospital) in the geographical region over which they have jurisdiction

Super-classes obo:IAO_0000100c

human daily movementc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000601
Super-classes obo:APOLLO_SV_00000402c

human daily movement data setc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000602
Super-classes obo:IAO_0000100c

potentially infectious contact data setc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000603
Super-classes obo:IAO_0000100c

control strategy censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000604
Super-classes obo:IAO_0000100c
Sub-classes obo:APOLLO_SV_00000606c
obo:APOLLO_SV_00000605c

school closure control strategy censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000605
Description

This class represents datasets about strategies for school closure. Datasets about individual actual school closures go elsewhere.

Super-classes obo:APOLLO_SV_00000604c

vaccination control strategy censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000606
Description

This class is an inventory of vaccination control strategies, not vaccinations themselves. So it should be a list of things like "Publix vaccination plan", "Alachua county vaccination plan", "Sam's Club vaccination plan", etc. And not a list of individual vaccinations given to actual patients (see population vaccination census)

Super-classes obo:APOLLO_SV_00000604c

vaccination censusc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000607
Super-classes obo:APOLLO_SV_00000187c

epidemic simulator action specificationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000793
Super-classes obo:IAO_0000007c
Sub-classes obo:APOLLO_SV_00000471c
obo:APOLLO_SV_00000183c
obo:APOLLO_SV_00000179c
obo:APOLLO_SV_00000452c
obo:APOLLO_SV_00000468c
obo:APOLLO_SV_00000288c
obo:APOLLO_SV_00000068c
obo:APOLLO_SV_00000474c
obo:APOLLO_SV_00000473c
obo:APOLLO_SV_00000284c
obo:APOLLO_SV_00000283c
obo:APOLLO_SV_00000285c
obo:APOLLO_SV_00000015c
obo:APOLLO_SV_00000427c
obo:APOLLO_SV_00000431c

infectious disease control strategy action specificationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000794
Super-classes obo:IAO_0000007c
Sub-classes obo:APOLLO_SV_00000124c
obo:APOLLO_SV_00000795c
obo:APOLLO_SV_00000101c
obo:APOLLO_SV_00000310c

individual treatment control strategy action specificationc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000795
Super-classes obo:APOLLO_SV_00000794c
Sub-classes obo:APOLLO_SV_00000052c
obo:APOLLO_SV_00000047c
obo:APOLLO_SV_00000138c
obo:APOLLO_SV_00000046c
obo:APOLLO_SV_00000051c
obo:APOLLO_SV_00000084c
obo:APOLLO_SV_00000120c

dataset creatingc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000796
Super-classes obo:OBI_0000011c
Sub-classes obo:APOLLO_SV_00000164c

creating a copyright licensec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000797
Description

Note: for less than 24 hours, this class was a bit more specific to software licenses, but it did not have the equivalent class axiom during that time.

Super-classes obo:OBI_0000011c

copyright licensec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000798
Description

Can be for any creative work including fiction. But the license itself is an ICE, and refers to real claims and obligations.

Super-classes obo:IAO_0000310c
Sub-classes obo:APOLLO_SV_00000535c

data service softwarec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000799
Super-classes obo:IAO_0000594c

TODOc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00001008
Super-classes obo:BFO_0000001c
Sub-classes obo:APOLLO_SV_00000121c
obo:APOLLO_SV_00000092c
obo:APOLLO_SV_00000127c
obo:APOLLO_SV_00000093c
obo:APOLLO_SV_00000083c
obo:APOLLO_SV_00000147c

facultative rolec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00002024
Super-classes obo:BFO_0000023c

BFO_0000001c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000001
Sub-classes obo:APOLLO_SV_00001008c
In domain of obo:APOLLO_SV_00000057op
In range of obo:APOLLO_SV_00000067op

BFO_0000003c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000003
In domain of obo:RO_0002222op
obo:BFO_0000155op
In range of obo:RO_0002222op
obo:BFO_0000156op

BFO_0000004c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000004
Sub-classes obo:APOLLO_SV_00000166c

BFO_0000006c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000006

BFO_0000008c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000008
In domain of obo:BFO_0000156op
In range of obo:BFO_0000155op

BFO_0000015c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000015
Sub-classes obo:APOLLO_SV_00000118c
obo:APOLLO_SV_00000455c
obo:APOLLO_SV_00000317c
obo:APOLLO_SV_00000456c
obo:GO_0008150c
obo:APOLLO_SV_00000578c
obo:APOLLO_SV_00000306c
obo:OGMS_0000096c
obo:APOLLO_SV_00000204c
obo:OGMS_0000063c
obo:ENVO_02500000c
obo:OGMS_0000105c
obo:APOLLO_SV_00000372c
obo:APOLLO_SV_00000140c
obo:APOLLO_SV_00000371c
obo:OBI_0000011c
obo:UBERON_0035943c
obo:OGMS_0000092c
In domain of obo:BFO_0000184op
In range of obo:BFO_0000054op
obo:BFO_0000185op

BFO_0000016c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000016
Sub-classes obo:APOLLO_SV_00000144c
obo:OGMS_0000031c
obo:APOLLO_SV_00000394c
obo:APOLLO_SV_00000227c
obo:OAE_0000055c
obo:APOLLO_SV_00000370c
obo:APOLLO_SV_00000266c
obo:APOLLO_SV_00000182c
obo:APOLLO_SV_00000454c
obo:APOLLO_SV_00000143c
obo:APOLLO_SV_00000404c
obo:OGMS_0000032c
obo:APOLLO_SV_00000145c
obo:APOLLO_SV_00000172c
In domain of obo:APOLLO_SV_00000543op

BFO_0000017c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000017
In domain of obo:BFO_0000054op

BFO_0000019c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000019
Sub-classes obo:PATO_0001241c
obo:PATO_0000047c
obo:OGMS_0000023c
In range of obo:APOLLO_SV_00000543op

BFO_0000023c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000023
Sub-classes obo:APOLLO_SV_00002024c
obo:OMRSE_00000055c
obo:OMRSE_00000024c
obo:OMRSE_00000026c
obo:OMRSE_00000007c
obo:APOLLO_SV_00000406c
obo:CHEBI_36044c

BFO_0000024c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000024
Sub-classes obo:APOLLO_SV_00000107c

object_aggregatec # Classes

URI http://purl.obolibrary.org/obo/BFO_0000027
Description

Examples: a heap of stones, a group of commuters on the subway, a collection of random bacteria, a flock of geese, the patients in a hospital

Super-classes obo:BFO_0000040c
Sub-classes obo:PCO_0000000c
obo:OMRSE_00000033c
obo:OMRSE_00000022c
obo:APOLLO_SV_00000094c
obo:OGMS_0000087c
obo:OBI_0000576c

BFO_0000029c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000029
Sub-classes obo:APOLLO_SV_00000464c

BFO_0000030c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000030
Sub-classes obo:DRON_00000005c

BFO_0000031c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000031
Sub-classes obo:IAO_0000030c
obo:APOLLO_SV_00000000c
In domain of obo:APOLLO_SV_00000102dp

BFO_0000034c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000034
Sub-classes obo:OMRSE_00000079c
obo:APOLLO_SV_00000556c
obo:OMRSE_00000053c
obo:VO_0000278c
obo:OMRSE_00000052c

BFO_0000038c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000038
Sub-classes obo:APOLLO_SV_00000435c
obo:APOLLO_SV_00000400c

BFO_0000040c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000040
Sub-classes obo:APOLLO_SV_00000104c
obo:APOLLO_SV_00000097c
obo:APOLLO_SV_00000100c
obo:UBERON_0000465c
obo:OMRSE_00000076c
obo:ENVO_00010483c
obo:OMRSE_00000074c
obo:OBI_0000047c
obo:BFO_0000027c
obo:OMRSE_00000061c
obo:OGMS_0000045c
obo:APOLLO_SV_00000220c
In domain of obo:BFO_0000185op
In range of obo:BFO_0000184op

BFO_0000144c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000144
Sub-classes obo:APOLLO_SV_00000226c

historyc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000182

antiviral drugc # Classes

URI http://purl.obolibrary.org/obo/CHEBI_36044
Description

The usage or intended usage of a drug product to act against a viral infection of a host.

Super-classes obo:BFO_0000023c

Zika feverc # Classes

URI http://purl.obolibrary.org/obo/DOID_0060478
Super-classes obo:APOLLO_SV_00000239c

dengue diseasec # Classes

URI http://purl.obolibrary.org/obo/DOID_12205
Super-classes obo:APOLLO_SV_00000239c
Sub-classes obo:DOID_12206c

dengue hemorrhagic feverc # Classes

URI http://purl.obolibrary.org/obo/DOID_12206
Super-classes obo:DOID_12205c

influenzac # Classes

URI http://purl.obolibrary.org/obo/DOID_8469
Super-classes obo:APOLLO_SV_00000239c

drug productc # Classes

URI http://purl.obolibrary.org/obo/DRON_00000005
Super-classes obo:BFO_0000030c

environmental materialc # Classes

URI http://purl.obolibrary.org/obo/ENVO_00010483
Description

Everything under this parent must be a mass noun. All subclasses are to be understood as being composed primarily of the named entity, rather than restricted to that entity. For example, "ENVO:water" is to be understood as "environmental material composed primarly of some CHEBI:water". This class is currently being aligned to the Basic Formal Ontology. Following this alignment, its definition and the definitions of its subclasses will be revised.

Super-classes obo:BFO_0000040c
Sub-classes obo:ENVO_01000797c

water vapourc # Classes

URI http://purl.obolibrary.org/obo/ENVO_01000266
Description

Perhaps a better relation between water vapour and water can be found in or added to RO?

Super-classes obo:ENVO_01000797c
Sub-classes obo:ENVO_01000268c

atmospheric water vapourc # Classes

URI http://purl.obolibrary.org/obo/ENVO_01000268
Super-classes obo:ENVO_01000266c

hydrological precipitation processc # Classes

URI http://purl.obolibrary.org/obo/ENVO_01000703
Description

"process" is included in the label to make it clear that we are not referring to the precipitated material (e.g. snow, rain, sleet)

Super-classes obo:ENVO_02500000c

air temperaturec # Classes

URI http://purl.obolibrary.org/obo/ENVO_01000753
Super-classes obo:ENVO_09200001c

gaseous environmental materialc # Classes

URI http://purl.obolibrary.org/obo/ENVO_01000797
Super-classes obo:ENVO_00010483c
Sub-classes obo:ENVO_01000266c

environmental system processc # Classes

URI http://purl.obolibrary.org/obo/ENVO_02500000
Description

Should environmental feature become something more towards a disposition, the assert would be updated to something like "has participant (environmental system or (material entity and has disposition some environmental feature))". There are several issues surrounding the reconcilliation of environmental feature and environmental system, both theoretical and practical.

Super-classes obo:BFO_0000015c
Sub-classes obo:ENVO_01000703c

temperature of environmental materialc # Classes

URI http://purl.obolibrary.org/obo/ENVO_09200000
Super-classes obo:PATO_0000146c
Sub-classes obo:ENVO_09200001c

temperature of airc # Classes

URI http://purl.obolibrary.org/obo/ENVO_09200001
Super-classes obo:ENVO_09200000c
Sub-classes obo:ENVO_01000753c

metagenomics analysisc # Classes

URI http://purl.obolibrary.org/obo/ERO_0000657
Super-classes obo:OBI_0000011c

websitec # Classes

URI http://purl.obolibrary.org/obo/FBcv_0000667
Super-classes obo:IAO_0000310c
Sub-classes obo:APOLLO_SV_00000590c

journalc # Classes

URI http://purl.obolibrary.org/obo/FBcv_0000787
Super-classes obo:IAO_0000030c

GAZ_00000448c # Classes

URI http://purl.obolibrary.org/obo/GAZ_00000448
Description

definition is circular.

GEO_000000371c # Classes

URI http://purl.obolibrary.org/obo/GEO_000000371
Sub-classes obo:APOLLO_SV_00000110c

GEO_000000372c # Classes

URI http://purl.obolibrary.org/obo/GEO_000000372
Sub-classes obo:APOLLO_SV_00000520c

GEO_000000788c # Classes

URI http://purl.obolibrary.org/obo/GEO_000000788
Sub-classes obo:APOLLO_SV_00000503c

reproductionc # Classes

URI http://purl.obolibrary.org/obo/GO_0000003
Super-classes obo:GO_0008150c
Sub-classes obo:APOLLO_SV_00000330c
obo:GO_0032504c
obo:APOLLO_SV_00000114c

response to stressc # Classes

URI http://purl.obolibrary.org/obo/GO_0006950
Description

Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.

Super-classes obo:GO_0050896c
Sub-classes obo:GO_0006952c

defense responsec # Classes

URI http://purl.obolibrary.org/obo/GO_0006952
Super-classes obo:GO_0006950c
Sub-classes obo:GO_0006954c

inflammatory responsec # Classes

URI http://purl.obolibrary.org/obo/GO_0006954
Description

This term was improved by GO_REF:0000022. It was moved.

Super-classes obo:GO_0006952c

eclosec # Classes

URI http://purl.obolibrary.org/obo/GO_0007562
Super-classes obo:GO_0071684c

female pregnancyc # Classes

URI http://purl.obolibrary.org/obo/GO_0007565
Super-classes obo:GO_0044703c

parturitionc # Classes

URI http://purl.obolibrary.org/obo/GO_0007567
Super-classes obo:GO_0044703c

agingc # Classes

URI http://purl.obolibrary.org/obo/GO_0007568
Super-classes obo:GO_0032502c
Sub-classes obo:GO_0010259c

behaviorc # Classes

URI http://purl.obolibrary.org/obo/GO_0007610
Description

Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.

Super-classes obo:GO_0008150c
Sub-classes obo:GO_0051705c
obo:APOLLO_SV_00000480c
obo:APOLLO_SV_00000401c
obo:APOLLO_SV_00000402c
obo:GO_0019098c

mating behaviorc # Classes

URI http://purl.obolibrary.org/obo/GO_0007617
Super-classes obo:GO_0044705c

biological processc # Classes

URI http://purl.obolibrary.org/obo/GO_0008150
Super-classes obo:BFO_0000015c
Sub-classes obo:GO_0071684c
obo:APOLLO_SV_00000186c
obo:GO_0051234c
obo:GO_0050896c
obo:GO_0000003c
obo:GO_0044409c
obo:APOLLO_SV_00000405c
obo:GO_0065007c
obo:GO_0022414c
obo:GO_0032502c
obo:GO_0007610c
obo:GO_0051704c
obo:APOLLO_SV_00000314c

multicellular organismal agingc # Classes

URI http://purl.obolibrary.org/obo/GO_0010259
Super-classes obo:GO_0007568c

regulation of cell deathc # Classes

URI http://purl.obolibrary.org/obo/GO_0010941
Super-classes obo:GO_0050794c
Sub-classes obo:GO_0043067c

ovipositionc # Classes

URI http://purl.obolibrary.org/obo/GO_0018991
Super-classes obo:GO_0019098c
Sub-classes obo:GO_0060403c

modulation by virus of host morphology or physiologyc # Classes

URI http://purl.obolibrary.org/obo/GO_0019048
Super-classes obo:GO_0044003c
Sub-classes obo:GO_0019054c

induction by virus of host apoptotic processc # Classes

URI http://purl.obolibrary.org/obo/GO_0019051
Super-classes obo:GO_0060139c
Sub-classes obo:GO_0039651c

modulation by virus of host processc # Classes

URI http://purl.obolibrary.org/obo/GO_0019054
Super-classes obo:GO_0019048c
Sub-classes obo:GO_0060153c

reproductive behaviorc # Classes

URI http://purl.obolibrary.org/obo/GO_0019098
Super-classes obo:GO_0048609c
obo:GO_0007610c
Sub-classes obo:GO_0033057c
obo:GO_0018991c
obo:NBO_0000034c
obo:GO_0044705c

reproductive processc # Classes

URI http://purl.obolibrary.org/obo/GO_0022414
Super-classes obo:GO_0008150c
Sub-classes obo:GO_0048609c
obo:GO_0044703c

developmental processc # Classes

URI http://purl.obolibrary.org/obo/GO_0032502
Super-classes obo:GO_0008150c
Sub-classes obo:GO_0007568c

multicellular organism reproductionc # Classes

URI http://purl.obolibrary.org/obo/GO_0032504
Super-classes obo:GO_0000003c
Sub-classes obo:APOLLO_SV_00000312c

multicellular organismal reproductive behaviorc # Classes

URI http://purl.obolibrary.org/obo/GO_0033057
Super-classes obo:GO_0019098c

social behaviorc # Classes

URI http://purl.obolibrary.org/obo/GO_0035176
Description

Behavior such as predation which involves members of different species is not social. Communication between members of different species is also not social behavior.

Super-classes obo:GO_0044419c

modification of morphology or physiology of other organismc # Classes

URI http://purl.obolibrary.org/obo/GO_0035821
Super-classes obo:GO_0065008c
Sub-classes obo:GO_0051817c

induction by virus of host cysteine-type endopeptidase activity involved in apoptotic processc # Classes

URI http://purl.obolibrary.org/obo/GO_0039651
Super-classes obo:GO_0019051c

regulation of programmed cell deathc # Classes

URI http://purl.obolibrary.org/obo/GO_0043067
Super-classes obo:GO_0010941c
Sub-classes obo:GO_0044531c

modification by symbiont of host morphology or physiologyc # Classes

URI http://purl.obolibrary.org/obo/GO_0044003
Super-classes obo:GO_0051817c
Sub-classes obo:GO_0019048c

entry into hostc # Classes

URI http://purl.obolibrary.org/obo/GO_0044409
Super-classes obo:GO_0008150c
Sub-classes obo:APOLLO_SV_00000167c
obo:APOLLO_SV_00000332c
obo:APOLLO_SV_00000334c
obo:APOLLO_SV_00000265c
obo:APOLLO_SV_00000115c
obo:APOLLO_SV_00000264c

interspecies interaction between organismsc # Classes

URI http://purl.obolibrary.org/obo/GO_0044419
Super-classes obo:GO_0051704c
Sub-classes obo:APOLLO_SV_00000596c
obo:GO_0035176c
obo:GO_0051701c

modulation of programmed cell death in other organismc # Classes

URI http://purl.obolibrary.org/obo/GO_0044531
Super-classes obo:GO_0043067c
Sub-classes obo:GO_0052248c

multi-organism reproductive processc # Classes

URI http://purl.obolibrary.org/obo/GO_0044703
Super-classes obo:GO_0022414c
Sub-classes obo:GO_0007567c
obo:GO_0007565c

multi-organism reproductive behaviorc # Classes

URI http://purl.obolibrary.org/obo/GO_0044705
Super-classes obo:GO_0019098c
Sub-classes obo:GO_0007617c

multicellular organismal reproductive processc # Classes

URI http://purl.obolibrary.org/obo/GO_0048609
Super-classes obo:GO_0022414c
Sub-classes obo:GO_0019098c

regulation of biological processc # Classes

URI http://purl.obolibrary.org/obo/GO_0050789
Super-classes obo:GO_0065007c
Sub-classes obo:GO_0050794c

regulation of cellular processc # Classes

URI http://purl.obolibrary.org/obo/GO_0050794
Super-classes obo:GO_0050789c
Sub-classes obo:GO_0010941c

response to stimulusc # Classes

URI http://purl.obolibrary.org/obo/GO_0050896
Description

Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.

Super-classes obo:GO_0008150c
Sub-classes obo:GO_0006950c

establishment of localizationc # Classes

URI http://purl.obolibrary.org/obo/GO_0051234
Super-classes obo:GO_0008150c

interaction with hostc # Classes

URI http://purl.obolibrary.org/obo/GO_0051701
Super-classes obo:GO_0044419c
Sub-classes obo:APOLLO_SV_00000421c
obo:APOLLO_SV_00000419c
obo:APOLLO_SV_00000418c
obo:APOLLO_SV_00000420c

multi-organism processc # Classes

URI http://purl.obolibrary.org/obo/GO_0051704
Super-classes obo:GO_0008150c
Sub-classes obo:GO_0044419c

multi-organism behaviorc # Classes

URI http://purl.obolibrary.org/obo/GO_0051705
Super-classes obo:GO_0007610c

modification of morphology or physiology of other organism involved in symbiotic interactionc # Classes

URI http://purl.obolibrary.org/obo/GO_0051817
Super-classes obo:GO_0035821c
Sub-classes obo:GO_0044003c

modulation by symbiont of host programmed cell deathc # Classes

URI http://purl.obolibrary.org/obo/GO_0052040
Super-classes obo:GO_0052248c
Sub-classes obo:GO_0052042c

positive regulation by symbiont of host programmed cell deathc # Classes

URI http://purl.obolibrary.org/obo/GO_0052042
Super-classes obo:GO_0052040c
Sub-classes obo:GO_0052501c

positive regulation by symbiont of host apoptotic processc # Classes

URI http://purl.obolibrary.org/obo/GO_0052151
Description

Note that term is to be used to annotate gene products in the symbiont. To annotate host gene products, consider the biological process term 'positive regulation of apoptosis ; GO:0043065'.

Super-classes obo:GO_0052501c
Sub-classes obo:GO_0060139c

modulation of programmed cell death in other organism involved in symbiotic interactionc # Classes

URI http://purl.obolibrary.org/obo/GO_0052248
Super-classes obo:GO_0044531c
Sub-classes obo:GO_0052040c

positive regulation by organism of apoptotic process in other organism involved in symbiotic interactionc # Classes

URI http://purl.obolibrary.org/obo/GO_0052501
Super-classes obo:GO_0052042c
Sub-classes obo:GO_0052151c

positive regulation of apoptotic process by virusc # Classes

URI http://purl.obolibrary.org/obo/GO_0060139
Super-classes obo:GO_0052151c
Sub-classes obo:GO_0019051c

modulation by virus of host cell cyclec # Classes

URI http://purl.obolibrary.org/obo/GO_0060153
Super-classes obo:GO_0019054c

post-mating ovipositionc # Classes

URI http://purl.obolibrary.org/obo/GO_0060403
Super-classes obo:GO_0018991c

biological regulationc # Classes

URI http://purl.obolibrary.org/obo/GO_0065007
Super-classes obo:GO_0008150c
Sub-classes obo:GO_0065008c
obo:GO_0050789c

regulation of biological qualityc # Classes

URI http://purl.obolibrary.org/obo/GO_0065008
Super-classes obo:GO_0065007c
Sub-classes obo:GO_0035821c

organism emergence from protective structurec # Classes

URI http://purl.obolibrary.org/obo/GO_0071684
Super-classes obo:GO_0008150c
Sub-classes obo:GO_0007562c

IAO_0000001c # Classes

URI http://purl.obolibrary.org/obo/IAO_0000001
Sub-classes obo:APOLLO_SV_00000463c
obo:APOLLO_SV_00000130c

measurement unit labelc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000003
Super-classes obo:IAO_0000009c
Sub-classes obo:UO_0000280c
obo:UO_0000003c
obo:UO_0000186c
In range of obo:IAO_0000039op

objective specificationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000005
Super-classes obo:IAO_0000033c
Sub-classes obo:APOLLO_SV_00000581c
obo:APOLLO_SV_00000387c
obo:APOLLO_SV_00000218c
obo:APOLLO_SV_00000541c
obo:APOLLO_SV_00000141c
obo:APOLLO_SV_00000588c
obo:OBI_0200166c
obo:APOLLO_SV_00000075c
obo:APOLLO_SV_00000290c

action specificationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000007
Super-classes obo:IAO_0000033c
Sub-classes obo:APOLLO_SV_00000586c
obo:APOLLO_SV_00000517c
obo:APOLLO_SV_00000146c
obo:APOLLO_SV_00000793c
obo:APOLLO_SV_00000481c
obo:APOLLO_SV_00000794c

labelc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000009
Sub-classes obo:IAO_0000003c

softwarec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000010
Super-classes obo:IAO_0000104c
Sub-classes obo:APOLLO_SV_00000525c
obo:APOLLO_SV_00000567c

data itemc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000027
Sub-classes obo:APOLLO_SV_00000135c
obo:STATO_0000258c
obo:APOLLO_SV_00000534c
obo:APOLLO_SV_00000531c
obo:OBI_0000674c
obo:APOLLO_SV_00000217c
obo:APOLLO_SV_00000433c
obo:APOLLO_SV_00000422c
obo:APOLLO_SV_00000568c
obo:APOLLO_SV_00000131c
obo:APOLLO_SV_00000470c
obo:APOLLO_SV_00000547c
obo:OBI_0000679c
obo:APOLLO_SV_00000448c
obo:IAO_0000109c
obo:APOLLO_SV_00000399c
obo:APOLLO_SV_00000569c
obo:APOLLO_SV_00000570c
obo:APOLLO_SV_00000432c
obo:OGMS_0000014c
obo:APOLLO_SV_00000446c
obo:APOLLO_SV_00000192c
obo:APOLLO_SV_00000193c

symbolc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000028
Sub-classes obo:IAO_0000129c

IAO_0000029c # Classes

URI http://purl.obolibrary.org/obo/IAO_0000029
Sub-classes obo:APOLLO_SV_00000069c
obo:APOLLO_SV_00000065c
obo:APOLLO_SV_00000012c

information content entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000030
Super-classes obo:BFO_0000031c
Sub-classes obo:APOLLO_SV_00000436c
obo:APOLLO_SV_00000198c
obo:OMRSE_00000132c
obo:APOLLO_SV_00000202c
obo:APOLLO_SV_00000289c
obo:APOLLO_SV_00000447c
obo:APOLLO_SV_00000296c
obo:APOLLO_SV_00000273c
obo:APOLLO_SV_00000377c
obo:APOLLO_SV_00000200c
obo:APOLLO_SV_00000260c
obo:APOLLO_SV_00000375c
obo:APOLLO_SV_00000162c
obo:APOLLO_SV_00000112c
obo:APOLLO_SV_00000125c
obo:APOLLO_SV_00000214c
obo:APOLLO_SV_00000161c
obo:APOLLO_SV_00000408c
obo:APOLLO_SV_00000215c
obo:UO_0000000c
obo:APOLLO_SV_00000208c
obo:APOLLO_SV_00000240c
obo:APOLLO_SV_00000393c
obo:FBcv_0000787c
obo:APOLLO_SV_00000096c
obo:APOLLO_SV_00000282c

scalar measurement datumc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000032
Super-classes obo:IAO_0000109c
Restrictions obo:IAO_0000004fp min 1
obo:IAO_0000039op min 1
Sub-classes obo:IAO_0000416c
obo:OBI_0001554c

directive information entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000033
Sub-classes obo:OBI_0000658c
obo:IAO_0000007c
obo:APOLLO_SV_00000134c
obo:IAO_0000005c
obo:APOLLO_SV_00000148c
obo:IAO_0000104c

IAO_0000038c # Classes

URI http://purl.obolibrary.org/obo/IAO_0000038
Sub-classes obo:OBI_0000714c

IAO_0000055c # Classes

URI http://purl.obolibrary.org/obo/IAO_0000055
Sub-classes obo:APOLLO_SV_00000103c
obo:APOLLO_SV_00000261c

algorithmc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000064
Super-classes obo:IAO_0000104c
Sub-classes obo:APOLLO_SV_00000174c
obo:APOLLO_SV_00000526c

data setc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000100
Sub-classes obo:APOLLO_SV_00000184c
obo:APOLLO_SV_00000559c
efo:EFO_0004600c
obo:APOLLO_SV_00000603c
obo:APOLLO_SV_00000542c
obo:APOLLO_SV_00000602c
obo:APOLLO_SV_00000593c
obo:APOLLO_SV_00000599c
obo:APOLLO_SV_00000085c
obo:APOLLO_SV_00000522c
obo:APOLLO_SV_00000591c
obo:APOLLO_SV_00000604c
obo:APOLLO_SV_00000600c
obo:APOLLO_SV_00000397c
obo:APOLLO_SV_00000528c
obo:APOLLO_SV_00000560c
obo:APOLLO_SV_00000554c
obo:APOLLO_SV_00000398c
obo:IAO_0000584c
obo:APOLLO_SV_00000173c

plan specificationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000104
Description

2/3/2009 Comment from OBI review.

Action specification not well enough specified. Conditional specification not well enough specified. Question whether all plan specifications have objective specifications.

Request that IAO either clarify these or change definitions not to use them

Super-classes obo:IAO_0000033c
Restrictions obo:BFO_0000051op some obo:IAO_0000005c
obo:BFO_0000051op some obo:IAO_0000007c
Sub-classes obo:APOLLO_SV_00000500c
obo:OBI_0500000c
obo:IAO_0000064c
obo:APOLLO_SV_00000388c
obo:APOLLO_SV_00000086c
obo:APOLLO_SV_00000212c
obo:IAO_0000010c

measurement datumc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000109
Super-classes obo:IAO_0000027c
Sub-classes obo:APOLLO_SV_00000263c
obo:APOLLO_SV_00000089c
obo:STATO_0000134c
obo:APOLLO_SV_00000438c
obo:APOLLO_SV_00000380c
obo:APOLLO_SV_00000149c
obo:APOLLO_SV_00000439c
obo:APOLLO_SV_00000133c
obo:APOLLO_SV_00000032c
obo:IAO_0000032c
obo:STATO_0000233c
obo:STATO_0000085c
obo:OBI_0302867c
obo:APOLLO_SV_00000437c
obo:IAO_0000582c

version numberc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000129
Super-classes obo:IAO_0000028c

IAO_0000178c # Classes

URI http://purl.obolibrary.org/obo/IAO_0000178

IAO_0000300c # Classes

URI http://purl.obolibrary.org/obo/IAO_0000300
Sub-classes obo:OBI_0001615c
obo:APOLLO_SV_00000476c

IAO_0000310c # Classes

URI http://purl.obolibrary.org/obo/IAO_0000310
Sub-classes http://purl.org/obo/owl/FBcv#FBcv_0000209c
obo:APOLLO_SV_00000798c
obo:FBcv_0000667c

IAO_0000408c # Classes

URI http://purl.obolibrary.org/obo/IAO_0000408
Sub-classes obo:APOLLO_SV_00000458c
obo:APOLLO_SV_00000459c
obo:APOLLO_SV_00000440c

time measurement datumc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000416
Super-classes obo:IAO_0000032c
Sub-classes obo:APOLLO_SV_00000504c
obo:APOLLO_SV_00000475c
obo:APOLLO_SV_00000243c
In range of obo:IAO_0000581op

IAO_0000577c # Classes

URI http://purl.obolibrary.org/obo/IAO_0000577
Sub-classes obo:OBI_0001628c

time stamped measurement datumc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000582
Super-classes (ub209bL10294C29c and ub209bL10299C13c)
obo:IAO_0000109c
In domain of obo:IAO_0000581op
obo:IAO_0000583op

time sampled measurement data setc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000584
Super-classes obo:IAO_0000100c
Restrictions obo:BFO_0000051op some obo:IAO_0000582c
Sub-classes obo:APOLLO_SV_00000064c

IAO_0000594c # Classes

URI http://purl.obolibrary.org/obo/IAO_0000594
Sub-classes obo:APOLLO_SV_00000565c
obo:APOLLO_SV_00000562c
obo:APOLLO_SV_00000563c
obo:APOLLO_SV_00000592c
obo:APOLLO_SV_00000799c
obo:APOLLO_SV_00000555c
obo:APOLLO_SV_00000007c
obo:APOLLO_SV_00000597c
obo:APOLLO_SV_00000564c

IAO_0020000c # Classes

URI http://purl.obolibrary.org/obo/IAO_0020000
Sub-classes obo:APOLLO_SV_00000039c
obo:APOLLO_SV_00000538c
obo:APOLLO_SV_00000105c
obo:APOLLO_SV_00000598c
obo:APOLLO_SV_00000395c
obo:APOLLO_SV_00000268c
obo:APOLLO_SV_00000013c
obo:OMIABIS_0000019c
obo:APOLLO_SV_00000461c
obo:APOLLO_SV_00000185c
obo:APOLLO_SV_00000510c
obo:OBI_0002110c
obo:APOLLO_SV_00000495c
obo:APOLLO_SV_00000509c
obo:APOLLO_SV_00000109c
obo:OBI_0001629c
obo:APOLLO_SV_00000054c
obo:APOLLO_SV_00000519c
obo:APOLLO_SV_00000469c
obo:APOLLO_SV_00000496c
obo:APOLLO_SV_00000010c
obo:APOLLO_SV_00000492c
obo:APOLLO_SV_00000006c
obo:APOLLO_SV_00000537c
obo:APOLLO_SV_00000493c
obo:APOLLO_SV_00000106c
obo:APOLLO_SV_00000536c
obo:APOLLO_SV_00000219c
obo:APOLLO_SV_00000117c
obo:APOLLO_SV_00000259c
obo:APOLLO_SV_00000119c
obo:APOLLO_SV_00000507c
obo:APOLLO_SV_00000508c
obo:APOLLO_SV_00000122c
obo:APOLLO_SV_00000108c

IAO_0020010c # Classes

URI http://purl.obolibrary.org/obo/IAO_0020010

sexual activityc # Classes

URI http://purl.obolibrary.org/obo/NBO_0000034
Super-classes obo:GO_0019098c
Sub-classes obo:APOLLO_SV_00000515c

Mus musculusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_10090
Super-classes obo:NCBITaxon_2759c

Virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_10239
Super-classes obo:OBI_0100026c
Sub-classes obo:NCBITaxon_35325c
obo:NCBITaxon_35268c
obo:NCBITaxon_35237c
obo:NCBITaxon_439488c
obo:NCBITaxon_39759c

Poxviridaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_10240
Super-classes obo:NCBITaxon_35237c
Sub-classes obo:NCBITaxon_10241c

Chordopoxvirinaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_10241
Super-classes obo:NCBITaxon_10240c
Sub-classes obo:NCBITaxon_10242c

Orthopoxvirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_10242
Super-classes obo:NCBITaxon_10241c
Sub-classes obo:NCBITaxon_10255c
obo:NCBITaxon_10244c

Monkeypox virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_10244
Super-classes obo:NCBITaxon_10242c

Variola virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_10255
Super-classes obo:NCBITaxon_10242c

H5N1 subtypec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_102793
Super-classes obo:NCBITaxon_11320c

Herpesviridaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_10292
Super-classes obo:NCBITaxon_548681c
Sub-classes obo:NCBITaxon_10293c

Alphaherpesvirinaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_10293
Super-classes obo:NCBITaxon_10292c
Sub-classes obo:NCBITaxon_10294c
obo:NCBITaxon_10319c

Simplexvirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_10294
Super-classes obo:NCBITaxon_10293c
Sub-classes obo:NCBITaxon_10298c
obo:NCBITaxon_10310c

Human alphaherpesvirus 1c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_10298
Super-classes obo:NCBITaxon_10294c

Human alphaherpesvirus 2c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_10310
Super-classes obo:NCBITaxon_10294c

Varicellovirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_10319
Super-classes obo:NCBITaxon_10293c
Sub-classes obo:NCBITaxon_10345c
obo:NCBITaxon_10335c

Human herpesvirus 3c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_10335
Super-classes obo:NCBITaxon_10319c

Suid herpesvirus 1c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_10345
Super-classes obo:NCBITaxon_10319c

Hepadnaviridaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_10404
Super-classes obo:NCBITaxon_35268c
Sub-classes obo:NCBITaxon_10405c

Orthohepadnavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_10405
Super-classes obo:NCBITaxon_10404c
Sub-classes obo:NCBITaxon_10407c

Hepatitis B virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_10407
Super-classes obo:NCBITaxon_10405c

Escherichia coli O157c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1045010
Super-classes obo:NCBITaxon_562c

Aedinic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1056966
Super-classes obo:NCBITaxon_43817c
Sub-classes obo:NCBITaxon_7158c

canis groupc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_106178
Super-classes obo:NCBITaxon_943c
Sub-classes obo:NCBITaxon_945c

phagocytophilum groupc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_106179
Super-classes obo:NCBITaxon_768c
Sub-classes obo:NCBITaxon_948c

Reoviridaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_10880
Super-classes obo:NCBITaxon_35325c
Sub-classes obo:NCBITaxon_689832c

Rotavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_10912
Super-classes obo:NCBITaxon_689832c

Togaviridaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11018
Super-classes obo:NCBITaxon_35278c
Sub-classes obo:NCBITaxon_11019c
obo:NCBITaxon_11040c

Alphavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11019
Super-classes obo:NCBITaxon_11018c
Sub-classes obo:NCBITaxon_177875c
obo:NCBITaxon_177873c
obo:NCBITaxon_11029c
obo:NCBITaxon_11020c
obo:NCBITaxon_177874c

Barmah Forest virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11020
Super-classes obo:NCBITaxon_11019c

Eastern equine encephalitis virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11021
Super-classes obo:NCBITaxon_177873c

Ross River virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11029
Super-classes obo:NCBITaxon_11019c

Western equine encephalitis virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11039
Super-classes obo:NCBITaxon_177874c

Rubivirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11040
Super-classes obo:NCBITaxon_11018c
Sub-classes obo:NCBITaxon_11041c

Rubella virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11041
Super-classes obo:NCBITaxon_11040c

Flaviviridaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11050
Super-classes obo:NCBITaxon_35278c
Sub-classes obo:NCBITaxon_11051c
obo:NCBITaxon_11102c

Flavivirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11051
Super-classes obo:NCBITaxon_11050c
Sub-classes obo:NCBITaxon_11052c
obo:NCBITaxon_40005c
obo:NCBITaxon_11071c
obo:NCBITaxon_29263c
obo:NCBITaxon_297696c

Dengue virus groupc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11052
Super-classes obo:NCBITaxon_11051c
Sub-classes obo:NCBITaxon_12637c

Dengue virus 1c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11053
Super-classes obo:NCBITaxon_12637c

Dengue virus 2c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11060
Super-classes obo:NCBITaxon_12637c

Dengue virus 3c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11069
Super-classes obo:NCBITaxon_12637c

Dengue virus 4c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11070
Super-classes obo:NCBITaxon_12637c

Japanese encephalitis virus groupc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11071
Super-classes obo:NCBITaxon_11051c
Sub-classes obo:NCBITaxon_11082c
obo:NCBITaxon_11072c
obo:NCBITaxon_44025c
obo:NCBITaxon_11079c
obo:NCBITaxon_11080c

Japanese encephalitis virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11072
Super-classes obo:NCBITaxon_11071c

Murray Valley encephalitis virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11079
Super-classes obo:NCBITaxon_11071c

St. Louis encephalitis virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11080
Super-classes obo:NCBITaxon_11071c

West Nile virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11082
Super-classes obo:NCBITaxon_11071c

Powassan virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11083
Super-classes obo:NCBITaxon_29263c

Yellow fever virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11089
Super-classes obo:NCBITaxon_40005c

Hepacivirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11102
Super-classes obo:NCBITaxon_11050c
Sub-classes obo:NCBITaxon_11103c

Hepatitis C virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11103
Super-classes obo:NCBITaxon_11102c

Coronaviridaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11118
Super-classes obo:NCBITaxon_76804c
Sub-classes obo:NCBITaxon_693995c

Chlamydia/Chlamydophila groupc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1113537
Super-classes obo:NCBITaxon_809c
Sub-classes obo:NCBITaxon_810c

pseudomallei groupc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_111527
Super-classes obo:NCBITaxon_32008c
Sub-classes obo:NCBITaxon_28450c

Mononegaviralesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11157
Super-classes obo:NCBITaxon_35301c
Sub-classes obo:NCBITaxon_11158c
obo:NCBITaxon_11244c
obo:NCBITaxon_11266c
obo:NCBITaxon_11270c

Paramyxoviridaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11158
Super-classes obo:NCBITaxon_11157c
Sub-classes obo:NCBITaxon_11229c
obo:NCBITaxon_39744c
obo:NCBITaxon_11159c
obo:NCBITaxon_260964c

Paramyxovirinaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11159
Super-classes obo:NCBITaxon_11158c

Mumps virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11161
Super-classes obo:NCBITaxon_39744c

Morbillivirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11229
Super-classes obo:NCBITaxon_11158c
Sub-classes obo:NCBITaxon_11234c

Measles virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11234
Super-classes obo:NCBITaxon_11229c

Pneumoviridaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11244
Super-classes obo:NCBITaxon_11157c
Sub-classes obo:NCBITaxon_11245c

Pneumovirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11245
Super-classes obo:NCBITaxon_11244c
Sub-classes obo:NCBITaxon_12814c

Filoviridaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11266
Super-classes obo:NCBITaxon_11157c
Sub-classes obo:NCBITaxon_186536c
obo:NCBITaxon_186537c

Marburg marburgvirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11269
Super-classes obo:NCBITaxon_186537c

Rhabdoviridaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11270
Super-classes obo:NCBITaxon_11157c
Sub-classes obo:NCBITaxon_11286c

Lyssavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11286
Super-classes obo:NCBITaxon_11270c
Sub-classes obo:NCBITaxon_11292c

Rabies lyssavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11292
Super-classes obo:NCBITaxon_11286c

Orthomyxoviridaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11308
Super-classes obo:NCBITaxon_35301c
Sub-classes obo:NCBITaxon_197911c
obo:NCBITaxon_197912c

Influenza A virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11320
Super-classes obo:NCBITaxon_197911c
Sub-classes obo:NCBITaxon_102793c
obo:NCBITaxon_119218c
obo:NCBITaxon_333278c
obo:NCBITaxon_119210c
obo:NCBITaxon_119214c
obo:NCBITaxon_114729c
obo:NCBITaxon_329376c
obo:NCBITaxon_119220c
obo:NCBITaxon_232441c
obo:NCBITaxon_114727c

spotted fever groupc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_114277
Super-classes obo:NCBITaxon_780c
Sub-classes obo:NCBITaxon_783c

typhus groupc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_114292
Super-classes obo:NCBITaxon_780c
Sub-classes obo:NCBITaxon_785c
obo:NCBITaxon_782c

H1N1 subtypec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_114727
Super-classes obo:NCBITaxon_11320c

H2N2 subtypec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_114729
Super-classes obo:NCBITaxon_11320c

Influenza B virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11520
Super-classes obo:NCBITaxon_197912c

Bunyaviridaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11571
Super-classes obo:NCBITaxon_35301c
Sub-classes obo:NCBITaxon_11598c
obo:NCBITaxon_11584c

Orthobunyavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11572
Super-classes obo:NCBITaxon_1980416c
Sub-classes obo:NCBITaxon_1933264c
obo:NCBITaxon_1933274c

La Crosse virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11577
Super-classes obo:NCBITaxon_1933264c

Snowshoe hare virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11580
Super-classes obo:NCBITaxon_1933264c

Phlebovirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11584
Super-classes obo:NCBITaxon_11571c
Sub-classes obo:NCBITaxon_1933187c

Rift Valley fever virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11588
Super-classes obo:NCBITaxon_1933187c

Hantavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11598
Super-classes obo:NCBITaxon_11571c

Arenaviridaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11617
Super-classes obo:NCBITaxon_35301c
Sub-classes obo:NCBITaxon_1653394c

Junin mammarenavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11619
Super-classes obo:NCBITaxon_1653394c

Lassa mammarenavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11620
Super-classes obo:NCBITaxon_1653394c

Machupo mammarenavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11628
Super-classes obo:NCBITaxon_1653394c

Retroviridaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11632
Super-classes obo:NCBITaxon_35268c
Sub-classes obo:NCBITaxon_327045c

Lentivirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11646
Super-classes obo:NCBITaxon_327045c
Sub-classes obo:NCBITaxon_11652c

Primate lentivirus groupc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11652
Super-classes obo:NCBITaxon_11646c
Sub-classes obo:NCBITaxon_11709c
obo:NCBITaxon_11676c

Human immunodeficiency virus 1c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11676
Super-classes obo:NCBITaxon_11652c

Human immunodeficiency virus 2c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11709
Super-classes obo:NCBITaxon_11652c

Teleostomic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_117570
Super-classes obo:NCBITaxon_7776c
Sub-classes obo:NCBITaxon_117571c

Euteleostomic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_117571
Super-classes obo:NCBITaxon_117570c
Sub-classes obo:NCBITaxon_8287c

Brucellaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_118882
Super-classes obo:NCBITaxon_356c
Sub-classes obo:NCBITaxon_234c

Coxiellaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_118968
Super-classes obo:NCBITaxon_118969c
Sub-classes obo:NCBITaxon_776c

Legionellalesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_118969
Super-classes obo:NCBITaxon_1236c
Sub-classes obo:NCBITaxon_444c
obo:NCBITaxon_118968c

Burkholderiaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_119060
Super-classes obo:NCBITaxon_80840c
Sub-classes obo:NCBITaxon_32008c

Enopleac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_119088
Super-classes obo:NCBITaxon_6231c
Sub-classes obo:NCBITaxon_1457286c

Chromadoreac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_119089
Super-classes obo:NCBITaxon_6231c
Sub-classes obo:NCBITaxon_6236c

H3N2 subtypec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_119210
Super-classes obo:NCBITaxon_11320c

H7N2 subtypec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_119214
Super-classes obo:NCBITaxon_11320c

H7N7 subtypec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_119218
Super-classes obo:NCBITaxon_11320c

H5N2 subtypec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_119220
Super-classes obo:NCBITaxon_11320c

Caliciviridaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_11974
Super-classes obo:NCBITaxon_35278c
Sub-classes obo:NCBITaxon_142786c

Picornaviridaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_12058
Super-classes obo:NCBITaxon_464095c
Sub-classes obo:NCBITaxon_12059c
obo:NCBITaxon_12109c
obo:NCBITaxon_12091c

Enterovirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_12059
Super-classes obo:NCBITaxon_12058c
Sub-classes obo:NCBITaxon_147711c
obo:NCBITaxon_138948c
obo:NCBITaxon_138950c
obo:NCBITaxon_138951c

Ecdysozoac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1206794
Super-classes obo:NCBITaxon_33317c
Sub-classes obo:NCBITaxon_88770c
obo:NCBITaxon_6231c

Human poliovirus 1c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_12080
Super-classes obo:NCBITaxon_138950c

Human poliovirus 3c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_12086
Super-classes obo:NCBITaxon_138950c

Hepatovirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_12091
Super-classes obo:NCBITaxon_12058c
Sub-classes obo:NCBITaxon_12092c

Hepatovirus Ac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_12092
Super-classes obo:NCBITaxon_12091c

Aphthovirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_12109
Super-classes obo:NCBITaxon_12058c
Sub-classes obo:NCBITaxon_12110c

Foot-and-mouth disease virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_12110
Super-classes obo:NCBITaxon_12109c

Nipah henipavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_121791
Super-classes obo:NCBITaxon_260964c

Proteobacteriac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1224
Super-classes obo:NCBITaxon_2c
Sub-classes obo:NCBITaxon_28216c
obo:NCBITaxon_28211c
obo:NCBITaxon_68525c
obo:NCBITaxon_1236c

Gammaproteobacteriac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1236
Super-classes obo:NCBITaxon_1224c
Sub-classes obo:NCBITaxon_118969c
obo:NCBITaxon_91347c
obo:NCBITaxon_72273c
obo:NCBITaxon_72274c
obo:NCBITaxon_135623c
obo:NCBITaxon_135625c

Firmicutesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1239
Super-classes obo:NCBITaxon_1783272c
Sub-classes obo:NCBITaxon_186801c
obo:NCBITaxon_91061c

Hepatitis E virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_12461
Super-classes obo:NCBITaxon_1678143c

Hepatitis delta virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_12475
Super-classes obo:NCBITaxon_39759c

Dengue virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_12637
Super-classes obo:NCBITaxon_11052c
Sub-classes obo:NCBITaxon_11060c
obo:NCBITaxon_11070c
obo:NCBITaxon_11053c
obo:NCBITaxon_11069c

Staphylococcusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1279
Super-classes obo:NCBITaxon_90964c
Sub-classes obo:NCBITaxon_1280c

Vibrio cholerae O1c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_127906
Super-classes obo:NCBITaxon_666c

Staphylococcus aureusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1280
Super-classes obo:NCBITaxon_1279c

Conoidasidac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1280412
Super-classes obo:NCBITaxon_5794c
Sub-classes obo:NCBITaxon_5796c

Respiratory syncytial virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_12814
Super-classes obo:NCBITaxon_11245c

Streptococcaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1300
Super-classes obo:NCBITaxon_186826c
Sub-classes obo:NCBITaxon_1301c

Streptococcusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1301
Super-classes obo:NCBITaxon_1300c
Sub-classes obo:NCBITaxon_36470c
obo:NCBITaxon_1313c

Streptophytinac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_131221
Super-classes obo:NCBITaxon_35493c
Sub-classes obo:NCBITaxon_3193c

Streptococcus pneumoniaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1313
Super-classes obo:NCBITaxon_1301c

Archelosauriac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1329799
Super-classes obo:NCBITaxon_32561c
Sub-classes obo:NCBITaxon_8492c

Middle East respiratory syndrome coronavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1335626
Super-classes obo:NCBITaxon_694002c

Dipnotetrapodomorphac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1338369
Super-classes obo:NCBITaxon_8287c
Sub-classes obo:NCBITaxon_32523c

Vibrionalesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_135623
Super-classes obo:NCBITaxon_1236c
Sub-classes obo:NCBITaxon_641c

Pasteurellalesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_135625
Super-classes obo:NCBITaxon_1236c
Sub-classes obo:NCBITaxon_712c

Spirochaetalesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_136
Super-classes obo:NCBITaxon_203692c
Sub-classes obo:NCBITaxon_1643685c
obo:NCBITaxon_137c

Spirochaetaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_137
Super-classes obo:NCBITaxon_136c
Sub-classes obo:NCBITaxon_157c

Borreliac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_138
Super-classes obo:NCBITaxon_1643685c

Bacillalesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1385
Super-classes obo:NCBITaxon_91061c
Sub-classes obo:NCBITaxon_186820c
obo:NCBITaxon_186817c
obo:NCBITaxon_90964c

Bacillusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1386
Super-classes obo:NCBITaxon_186817c
Sub-classes obo:NCBITaxon_86661c

Enterovirus Ac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_138948
Super-classes obo:NCBITaxon_12059c
Sub-classes obo:NCBITaxon_31704c
obo:NCBITaxon_39054c

Enterovirus Cc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_138950
Super-classes obo:NCBITaxon_12059c
Sub-classes obo:NCBITaxon_12080c
obo:NCBITaxon_12086c

Enterovirus Dc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_138951
Super-classes obo:NCBITaxon_12059c
Sub-classes obo:NCBITaxon_42789c

Bacillus anthracisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1392
Super-classes obo:NCBITaxon_86661c

Norovirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_142786
Super-classes obo:NCBITaxon_11974c

Boreoeutheriac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1437010
Super-classes obo:NCBITaxon_9347c
Sub-classes obo:NCBITaxon_314146c
obo:NCBITaxon_314145c

Trichinella murrellic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_144512
Super-classes obo:NCBITaxon_6333c

Dorylaimiac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1457286
Super-classes obo:NCBITaxon_119088c
Sub-classes obo:NCBITaxon_6329c

Saccharomycotinac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_147537
Super-classes obo:NCBITaxon_716545c
Sub-classes obo:NCBITaxon_4891c

Pezizomycotinac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_147538
Super-classes obo:NCBITaxon_716545c
Sub-classes obo:NCBITaxon_716546c

Eurotiomycetesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_147545
Super-classes obo:NCBITaxon_716546c
Sub-classes obo:NCBITaxon_451871c

NCBITaxon_147711c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_147711
Super-classes obo:NCBITaxon_12059c

Clostridiumc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1485
Super-classes obo:NCBITaxon_31979c
Sub-classes obo:NCBITaxon_1491c
obo:NCBITaxon_1513c

Clostridium botulinumc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1491
Super-classes obo:NCBITaxon_1485c

Clostridioides difficilec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1496
Super-classes obo:NCBITaxon_1870884c

Clostridium tetanic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1513
Super-classes obo:NCBITaxon_1485c

Clavispora/Candida cladec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1540022
Super-classes obo:NCBITaxon_36910c
Sub-classes obo:NCBITaxon_498019c

Galloanseraec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1549675
Super-classes obo:NCBITaxon_8825c
Sub-classes obo:NCBITaxon_8976c
obo:NCBITaxon_8826c

Treponemac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_157
Super-classes obo:NCBITaxon_137c
Sub-classes obo:NCBITaxon_160c

Onygenales incertae sedisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1593277
Super-classes obo:NCBITaxon_33183c
Sub-classes obo:NCBITaxon_5500c

Treponema pallidumc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_160
Super-classes obo:NCBITaxon_157c
Sub-classes obo:NCBITaxon_161c

Treponema pallidum subsp. pallidumc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_161
Super-classes obo:NCBITaxon_160c

Listeriac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1637
Super-classes obo:NCBITaxon_186820c
Sub-classes obo:NCBITaxon_1638c
obo:NCBITaxon_1641c
obo:NCBITaxon_1639c

Listeria ivanoviic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1638
Super-classes obo:NCBITaxon_1637c

Listeria monocytogenesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1639
Super-classes obo:NCBITaxon_1637c

Plasmodiidaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1639119
Super-classes obo:NCBITaxon_5819c
Sub-classes obo:NCBITaxon_5820c

Listeria grayic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1641
Super-classes obo:NCBITaxon_1637c

Borreliaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1643685
Super-classes obo:NCBITaxon_136c
Sub-classes obo:NCBITaxon_138c

Leptospiralesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1643688
Super-classes obo:NCBITaxon_203692c
Sub-classes obo:NCBITaxon_170c

Yersinia pseudotuberculosis complexc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1649845
Super-classes obo:NCBITaxon_629c
Sub-classes obo:NCBITaxon_632c

Corynebacteriaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1653
Super-classes obo:NCBITaxon_85007c
Sub-classes obo:NCBITaxon_1716c

Mammarenavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1653394
Super-classes obo:NCBITaxon_11617c
Sub-classes obo:NCBITaxon_11628c
obo:NCBITaxon_11620c
obo:NCBITaxon_45709c
obo:NCBITaxon_45219c
obo:NCBITaxon_11619c
obo:NCBITaxon_649188c

Orthohepevirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1678141
Super-classes obo:NCBITaxon_291484c
Sub-classes obo:NCBITaxon_1678143c

Orthohepevirus Ac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1678143
Super-classes obo:NCBITaxon_1678141c
Sub-classes obo:NCBITaxon_12461c

Leptospiraceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_170
Super-classes obo:NCBITaxon_1643688c
Sub-classes obo:NCBITaxon_171c

Leptospirac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_171
Super-classes obo:NCBITaxon_170c

Corynebacteriumc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1716
Super-classes obo:NCBITaxon_1653c
Sub-classes obo:NCBITaxon_1717c

Corynebacterium diphtheriaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1717
Super-classes obo:NCBITaxon_1716c

Actinobacteriac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1760
Super-classes obo:NCBITaxon_201174c
Sub-classes obo:NCBITaxon_85007c

Mycobacteriaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1762
Super-classes obo:NCBITaxon_85007c
Sub-classes obo:NCBITaxon_1763c

Mycobacteriumc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1763
Super-classes obo:NCBITaxon_1762c
Sub-classes obo:NCBITaxon_1769c
obo:NCBITaxon_77643c
obo:NCBITaxon_480418c

Mycobacterium lepraec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1769
Super-classes obo:NCBITaxon_1763c

Mycobacterium tuberculosisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1773
Super-classes obo:NCBITaxon_77643c

EEEV complexc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_177873
Super-classes obo:NCBITaxon_11019c
Sub-classes obo:NCBITaxon_11021c

WEEV complexc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_177874
Super-classes obo:NCBITaxon_11019c
Sub-classes obo:NCBITaxon_11039c

SFV complexc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_177875
Super-classes obo:NCBITaxon_11019c
Sub-classes obo:NCBITaxon_37124c

PVC groupc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1783257
Super-classes obo:NCBITaxon_2c
Sub-classes obo:NCBITaxon_204428c

Terrabacteria groupc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1783272
Super-classes obo:NCBITaxon_2c
Sub-classes obo:NCBITaxon_201174c
obo:NCBITaxon_1239c

Ebolavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_186536
Super-classes obo:NCBITaxon_11266c
Sub-classes obo:NCBITaxon_186540c
obo:NCBITaxon_186538c
obo:NCBITaxon_186539c
obo:NCBITaxon_186541c
obo:NCBITaxon_565995c

Marburgvirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_186537
Super-classes obo:NCBITaxon_11266c
Sub-classes obo:NCBITaxon_11269c

Zaire ebolavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_186538
Super-classes obo:NCBITaxon_186536c

Reston ebolavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_186539
Super-classes obo:NCBITaxon_186536c

Sudan ebolavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_186540
Super-classes obo:NCBITaxon_186536c

Tai Forest ebolavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_186541
Super-classes obo:NCBITaxon_186536c

Clostridiac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_186801
Super-classes obo:NCBITaxon_1239c
Sub-classes obo:NCBITaxon_186802c

Clostridialesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_186802
Super-classes obo:NCBITaxon_186801c
Sub-classes obo:NCBITaxon_186804c
obo:NCBITaxon_31979c

Peptostreptococcaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_186804
Super-classes obo:NCBITaxon_186802c
Sub-classes obo:NCBITaxon_1870884c

Bacillaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_186817
Super-classes obo:NCBITaxon_1385c
Sub-classes obo:NCBITaxon_1386c

Listeriaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_186820
Super-classes obo:NCBITaxon_1385c
Sub-classes obo:NCBITaxon_1637c

Lactobacillalesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_186826
Super-classes obo:NCBITaxon_91061c
Sub-classes obo:NCBITaxon_1300c

Clostridioidesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1870884
Super-classes obo:NCBITaxon_186804c
Sub-classes obo:NCBITaxon_1496c

Yersiniaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1903411
Super-classes obo:NCBITaxon_91347c
Sub-classes obo:NCBITaxon_629c

Rift Valley fever phlebovirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1933187
Super-classes obo:NCBITaxon_11584c
Sub-classes obo:NCBITaxon_11588c

California encephalitis orthobunyavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1933264
Super-classes obo:NCBITaxon_11572c
Sub-classes obo:NCBITaxon_45270c
obo:NCBITaxon_45269c
obo:NCBITaxon_11577c
obo:NCBITaxon_35305c
obo:NCBITaxon_35511c
obo:NCBITaxon_11580c

Guaroa orthobunyavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1933274
Super-classes obo:NCBITaxon_11572c
Sub-classes obo:NCBITaxon_80941c

Campylobacterc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_194
Super-classes obo:NCBITaxon_72294c

Pancrustaceac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_197562
Super-classes obo:NCBITaxon_197563c
Sub-classes obo:NCBITaxon_6960c

Mandibulatac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_197563
Super-classes obo:NCBITaxon_6656c
Sub-classes obo:NCBITaxon_197562c

Influenzavirus Ac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_197911
Super-classes obo:NCBITaxon_11308c
Sub-classes obo:NCBITaxon_11320c

Influenzavirus Bc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_197912
Super-classes obo:NCBITaxon_11308c
Sub-classes obo:NCBITaxon_11520c

Bunyaviralesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1980410
Super-classes obo:NCBITaxon_35301c
Sub-classes obo:NCBITaxon_1980415c
obo:NCBITaxon_1980416c

Nairoviridaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1980415
Super-classes obo:NCBITaxon_1980410c
Sub-classes obo:NCBITaxon_1980517c

Peribunyaviridaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1980416
Super-classes obo:NCBITaxon_1980410c
Sub-classes obo:NCBITaxon_11572c

Orthonairovirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1980517
Super-classes obo:NCBITaxon_1980415c
Sub-classes obo:NCBITaxon_1980519c

Crimean-Congo hemorrhagic fever orthonairovirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_1980519
Super-classes obo:NCBITaxon_1980517c

Coccidioides posadasiic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_199306
Super-classes obo:NCBITaxon_5500c

Bacteriac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_2
Super-classes obo:OBI_0100026c
Sub-classes obo:NCBITaxon_1224c
obo:NCBITaxon_1783257c
obo:NCBITaxon_1783272c
obo:NCBITaxon_203691c

Actinobacteriac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_201174
Super-classes obo:NCBITaxon_1783272c
Sub-classes obo:NCBITaxon_1760c

Spirochaetesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_203691
Super-classes obo:NCBITaxon_2c
Sub-classes obo:NCBITaxon_203692c

Spirochaetiac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_203692
Super-classes obo:NCBITaxon_203691c
Sub-classes obo:NCBITaxon_136c
obo:NCBITaxon_1643688c

Chlamydiaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_204428
Super-classes obo:NCBITaxon_1783257c
Sub-classes obo:NCBITaxon_204429c

Chlamydiiac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_204429
Super-classes obo:NCBITaxon_204428c
Sub-classes obo:NCBITaxon_51291c

Neisserialesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_206351
Super-classes obo:NCBITaxon_28216c
Sub-classes obo:NCBITaxon_481c

Fornicatac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_207245
Super-classes obo:NCBITaxon_2759c
Sub-classes obo:NCBITaxon_5738c

Helicobacterc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_209
Super-classes obo:NCBITaxon_72293c
Sub-classes obo:NCBITaxon_210c

Helicobacter pyloric # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_210
Super-classes obo:NCBITaxon_209c

Campylobacteralesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_213849
Super-classes obo:NCBITaxon_29547c
Sub-classes obo:NCBITaxon_72294c
obo:NCBITaxon_72293c

Psoroptidiac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_223472
Super-classes obo:NCBITaxon_6951c
Sub-classes obo:NCBITaxon_83158c

SARS coronavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_227859
Super-classes obo:NCBITaxon_694002c

H5N8 subtypec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_232441
Super-classes obo:NCBITaxon_11320c

Brucellac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_234
Super-classes obo:NCBITaxon_118882c
Sub-classes obo:NCBITaxon_36855c
obo:NCBITaxon_29459c
obo:NCBITaxon_235c
obo:NCBITaxon_29461c

Brucella abortusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_235
Super-classes obo:NCBITaxon_234c

Cryptosporidium hominisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_237895
Super-classes obo:NCBITaxon_5806c

Henipavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_260964
Super-classes obo:NCBITaxon_11158c
Sub-classes obo:NCBITaxon_121791c

Francisellac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_262
Super-classes obo:NCBITaxon_34064c
Sub-classes obo:NCBITaxon_263c

Francisella tularensisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_263
Super-classes obo:NCBITaxon_262c

Metschnikowiaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_27319
Super-classes obo:NCBITaxon_4892c
Sub-classes obo:NCBITaxon_36910c

Eukaryotac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_2759
Super-classes obo:OBI_0100026c
Sub-classes obo:NCBITaxon_33682c
obo:NCBITaxon_207245c
obo:NCBITaxon_9606c
obo:NCBITaxon_10090c
obo:NCBITaxon_33154c
obo:NCBITaxon_33090c
obo:NCBITaxon_554915c
obo:NCBITaxon_33630c

Bovinaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_27592
Super-classes obo:NCBITaxon_9895c
Sub-classes obo:NCBITaxon_9903c

Alphaproteobacteriac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_28211
Super-classes obo:NCBITaxon_1224c
Sub-classes obo:NCBITaxon_766c
obo:NCBITaxon_356c

Betaproteobacteriac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_28216
Super-classes obo:NCBITaxon_1224c
Sub-classes obo:NCBITaxon_80840c
obo:NCBITaxon_206351c

Porcine epidemic diarrhea virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_28295
Super-classes obo:NCBITaxon_693996c

Burkholderia pseudomalleic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_28450
Super-classes obo:NCBITaxon_111527c

Salmonella entericac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_28901
Super-classes obo:NCBITaxon_590c
Sub-classes obo:NCBITaxon_59201c

Hepeviridaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_291484
Super-classes obo:NCBITaxon_35278c
Sub-classes obo:NCBITaxon_1678141c

Ancylostomac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_29169
Super-classes obo:NCBITaxon_53469c
Sub-classes obo:NCBITaxon_51022c
obo:NCBITaxon_29170c

Ancylostoma caninumc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_29170
Super-classes obo:NCBITaxon_29169c

tick-borne encephalitis virus groupc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_29263
Super-classes obo:NCBITaxon_11051c
Sub-classes obo:NCBITaxon_11083c

Brucella melitensisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_29459
Super-classes obo:NCBITaxon_234c

Brucella suisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_29461
Super-classes obo:NCBITaxon_234c

Epsilonproteobacteriac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_29547
Super-classes obo:NCBITaxon_68525c
Sub-classes obo:NCBITaxon_213849c

Spondweni virus groupc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_297696
Super-classes obo:NCBITaxon_11051c
Sub-classes obo:NCBITaxon_64320c

Schistosomatoideac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_31244
Super-classes obo:NCBITaxon_6180c
Sub-classes obo:NCBITaxon_31245c

Schistosomatidaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_31245
Super-classes obo:NCBITaxon_31244c
Sub-classes obo:NCBITaxon_6181c

Laurasiatheriac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_314145
Super-classes obo:NCBITaxon_1437010c
Sub-classes obo:NCBITaxon_91561c
obo:NCBITaxon_9787c
obo:NCBITaxon_33554c

Euarchontogliresc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_314146
Super-classes obo:NCBITaxon_1437010c
Sub-classes obo:NCBITaxon_9443c

Simiiformesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_314293
Super-classes obo:NCBITaxon_376913c
Sub-classes obo:NCBITaxon_9526c

Cercopithecoideac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_314294
Super-classes obo:NCBITaxon_9526c
Sub-classes obo:NCBITaxon_9527c

Coxsackievirus A16c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_31704
Super-classes obo:NCBITaxon_138948c

Embryophytac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_3193
Super-classes obo:NCBITaxon_131221c

Clostridiaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_31979
Super-classes obo:NCBITaxon_186802c
Sub-classes obo:NCBITaxon_1485c

Burkholderiac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_32008
Super-classes obo:NCBITaxon_119060c
Sub-classes obo:NCBITaxon_111527c

Tetrapodac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_32523
Super-classes obo:NCBITaxon_1338369c
Sub-classes obo:NCBITaxon_32524c

Amniotac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_32524
Super-classes obo:NCBITaxon_32523c
Sub-classes obo:NCBITaxon_40674c
obo:NCBITaxon_8457c

Theriac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_32525
Description

authority: Theria Parker & Haswell, 1897

Super-classes obo:NCBITaxon_40674c
Sub-classes obo:NCBITaxon_9347c

Sauriac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_32561
Super-classes obo:NCBITaxon_8457c
Sub-classes obo:NCBITaxon_1329799c

Orthoretrovirinaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_327045
Super-classes obo:NCBITaxon_11632c
Sub-classes obo:NCBITaxon_11646c

H5N6 subtypec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_329376
Super-classes obo:NCBITaxon_11320c

Entamoebidaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_33084
Super-classes obo:NCBITaxon_555406c
Sub-classes obo:NCBITaxon_5758c

Viridiplantaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_33090
Super-classes obo:NCBITaxon_2759c
Sub-classes obo:NCBITaxon_35493c

Opisthokontac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_33154
Super-classes obo:NCBITaxon_2759c
Sub-classes obo:NCBITaxon_4751c
obo:NCBITaxon_33208c

Onygenalesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_33183
Super-classes obo:NCBITaxon_451871c
Sub-classes obo:NCBITaxon_1593277c

Metazoac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_33208
Super-classes obo:NCBITaxon_33154c
Sub-classes obo:NCBITaxon_6072c

Bilateriac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_33213
Super-classes obo:NCBITaxon_6072c
Sub-classes obo:NCBITaxon_33511c
obo:NCBITaxon_33317c
obo:NCBITaxon_6157c

Ancylostomatoideac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_33277
Super-classes obo:NCBITaxon_6308c
Sub-classes obo:NCBITaxon_33278c

Ancylostomatidaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_33278
Super-classes obo:NCBITaxon_33277c
Sub-classes obo:NCBITaxon_53469c

Protostomiac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_33317
Super-classes obo:NCBITaxon_33213c
Sub-classes obo:NCBITaxon_1206794c

H7N9 subtypec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_333278
Super-classes obo:NCBITaxon_11320c

Neopterac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_33340
Super-classes obo:NCBITaxon_7496c
Sub-classes obo:NCBITaxon_33392c

Endopterygotac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_33392
Super-classes obo:NCBITaxon_33340c
Sub-classes obo:NCBITaxon_7147c

Deuterostomiac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_33511
Super-classes obo:NCBITaxon_33213c
Sub-classes obo:NCBITaxon_7711c

Carnivorac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_33554
Super-classes obo:NCBITaxon_314145c
Sub-classes obo:NCBITaxon_379584c

Alveolatac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_33630
Super-classes obo:NCBITaxon_2759c
Sub-classes obo:NCBITaxon_5794c

Euglenozoac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_33682
Super-classes obo:NCBITaxon_2759c
Sub-classes obo:NCBITaxon_5653c

Rickettsieaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_33988
Super-classes obo:NCBITaxon_775c
Sub-classes obo:NCBITaxon_780c

Francisellaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_34064
Super-classes obo:NCBITaxon_72273c
Sub-classes obo:NCBITaxon_262c

Cryptosporidiidaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_35082
Super-classes obo:NCBITaxon_423054c
Sub-classes obo:NCBITaxon_5806c

dsDNA virus, no RNA stagec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_35237
Super-classes obo:NCBITaxon_10239c
Sub-classes obo:NCBITaxon_548681c
obo:NCBITaxon_10240c

Retro-transcribing virusesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_35268
Super-classes obo:NCBITaxon_10239c
Sub-classes obo:NCBITaxon_10404c
obo:NCBITaxon_11632c

ssRNA positive-strand viruses, no DNA stagec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_35278
Super-classes obo:NCBITaxon_439488c
Sub-classes obo:NCBITaxon_11018c
obo:NCBITaxon_11050c
obo:NCBITaxon_76804c
obo:NCBITaxon_291484c
obo:NCBITaxon_464095c
obo:NCBITaxon_11974c

ssRNA negative-strand virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_35301
Super-classes obo:NCBITaxon_439488c
Sub-classes obo:NCBITaxon_11617c
obo:NCBITaxon_11308c
obo:NCBITaxon_11571c
obo:NCBITaxon_11157c
obo:NCBITaxon_1980410c

California encephalitis virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_35305
Super-classes obo:NCBITaxon_1933264c

dsRNA virusesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_35325
Super-classes obo:NCBITaxon_10239c
Sub-classes obo:NCBITaxon_10880c

Streptophytac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_35493
Super-classes obo:NCBITaxon_33090c
Sub-classes obo:NCBITaxon_131221c

Suinac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_35497
Super-classes obo:NCBITaxon_91561c
Sub-classes obo:NCBITaxon_9821c

Pecorac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_35500
Super-classes obo:NCBITaxon_9845c
Sub-classes obo:NCBITaxon_9895c

Equus c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_35510
Super-classes obo:NCBITaxon_9789c
Sub-classes obo:NCBITaxon_9796c

Jamestown Canyon virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_35511
Super-classes obo:NCBITaxon_1933264c

Rhizobialesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_356
Super-classes obo:NCBITaxon_28211c
Sub-classes obo:NCBITaxon_118882c

Plasmodium ovalec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_36330
Super-classes obo:NCBITaxon_418103c

Streptococcus sp. 'group A'c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_36470
Super-classes obo:NCBITaxon_1301c

Brucella canisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_36855
Super-classes obo:NCBITaxon_234c

Clavisporac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_36910
Super-classes obo:NCBITaxon_27319c
Sub-classes obo:NCBITaxon_1540022c

Chikungunya virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_37124
Super-classes obo:NCBITaxon_177875c

Haplorrhinic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_376913
Super-classes obo:NCBITaxon_9443c
Sub-classes obo:NCBITaxon_314293c

Caniformiac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_379584
Super-classes obo:NCBITaxon_33554c
Sub-classes obo:NCBITaxon_9608c

Enterovirus A71c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_39054
Super-classes obo:NCBITaxon_138948c

Rubulavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_39744
Super-classes obo:NCBITaxon_11158c
Sub-classes obo:NCBITaxon_11161c

Deltavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_39759
Super-classes obo:NCBITaxon_10239c
Sub-classes obo:NCBITaxon_12475c

Klebsiella granulomatisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_39824
Super-classes obo:NCBITaxon_570c

Yellow fever virus groupc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_40005
Super-classes obo:NCBITaxon_11051c
Sub-classes obo:NCBITaxon_11089c

Mammaliac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_40674
Super-classes obo:NCBITaxon_32524c
Sub-classes obo:NCBITaxon_32525c

Plasmodium (Plasmodium)c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_418103
Super-classes obo:NCBITaxon_5820c
Sub-classes obo:NCBITaxon_5858c
obo:NCBITaxon_36330c
obo:NCBITaxon_5855c

Plasmodium (Laverania)c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_418107
Super-classes obo:NCBITaxon_5820c
Sub-classes obo:NCBITaxon_5833c

Culicoideac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_41827
Super-classes obo:NCBITaxon_43786c
Sub-classes obo:NCBITaxon_7157c

Aconoidasidac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_422676
Super-classes obo:NCBITaxon_5794c
Sub-classes obo:NCBITaxon_5819c

Eimeriorinac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_423054
Super-classes obo:NCBITaxon_75739c
Sub-classes obo:NCBITaxon_5799c
obo:NCBITaxon_35082c

Enterovirus D68c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_42789
Super-classes obo:NCBITaxon_138951c

Dinosauriac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_436486
Super-classes obo:NCBITaxon_8492c
Sub-classes obo:NCBITaxon_436489c

Saurischiac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_436489
Super-classes obo:NCBITaxon_436486c
Sub-classes obo:NCBITaxon_436491c

Theropodac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_436491
Super-classes obo:NCBITaxon_436489c
Sub-classes obo:NCBITaxon_436492c

Coelurosauriac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_436492
Super-classes obo:NCBITaxon_436491c
Sub-classes obo:NCBITaxon_8782c

Culicomorphac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_43786
Super-classes obo:NCBITaxon_7148c
Sub-classes obo:NCBITaxon_41827c

Anophelinaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_43816
Super-classes obo:NCBITaxon_7157c
Sub-classes obo:NCBITaxon_7164c

Culicinaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_43817
Super-classes obo:NCBITaxon_7157c
Sub-classes obo:NCBITaxon_1056966c
obo:NCBITaxon_53550c

ssRNA virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_439488
Super-classes obo:NCBITaxon_10239c
Sub-classes obo:NCBITaxon_35301c
obo:NCBITaxon_35278c

Koutango virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_44025
Super-classes obo:NCBITaxon_11071c

Legionellaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_444
Super-classes obo:NCBITaxon_118969c
Sub-classes obo:NCBITaxon_445c

Cyclosporac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_44417
Super-classes obo:NCBITaxon_5799c
Sub-classes obo:NCBITaxon_88456c

Anopheles c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_44482
Super-classes obo:NCBITaxon_7164c

Legionellac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_445
Super-classes obo:NCBITaxon_444c

Dikaryac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_451864
Super-classes obo:NCBITaxon_4751c
Sub-classes obo:NCBITaxon_4890c

Eurotiomycetidaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_451871
Super-classes obo:NCBITaxon_147545c
Sub-classes obo:NCBITaxon_33183c

Guanarito mammarenavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_45219
Super-classes obo:NCBITaxon_1653394c

Inkoo virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_45269
Super-classes obo:NCBITaxon_1933264c

Tahyna virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_45270
Super-classes obo:NCBITaxon_1933264c

Sabia mammarenavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_45709
Super-classes obo:NCBITaxon_1653394c

Trichinella britovic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_45882
Super-classes obo:NCBITaxon_6333c

Picornaviralesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_464095
Super-classes obo:NCBITaxon_35278c
Sub-classes obo:NCBITaxon_12058c

Perdicinaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_466544
Super-classes obo:NCBITaxon_9005c
Sub-classes obo:NCBITaxon_9090c

Meleagridinaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_466552
Super-classes obo:NCBITaxon_9005c
Sub-classes obo:NCBITaxon_9102c

Moraxellaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_468
Super-classes obo:NCBITaxon_72274c
Sub-classes obo:NCBITaxon_469c

Acinetobacterc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_469
Super-classes obo:NCBITaxon_468c
Sub-classes obo:NCBITaxon_909768c

Acinetobacter baumanniic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_470
Super-classes obo:NCBITaxon_909768c

Sarcoptinaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_474019
Super-classes obo:NCBITaxon_52281c
Sub-classes obo:NCBITaxon_52282c

Fungic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_4751
Super-classes obo:NCBITaxon_33154c
Sub-classes obo:NCBITaxon_451864c

Schizotrypanumc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_47570
Super-classes obo:NCBITaxon_5690c
Sub-classes obo:NCBITaxon_5693c

Mycobacterium lepromatosisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_480418
Super-classes obo:NCBITaxon_1763c

Neisseriaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_481
Super-classes obo:NCBITaxon_206351c
Sub-classes obo:NCBITaxon_482c

Neisseriac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_482
Super-classes obo:NCBITaxon_481c
Sub-classes obo:NCBITaxon_485c
obo:NCBITaxon_487c

Neisseria gonorrhoeaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_485
Super-classes obo:NCBITaxon_482c

Neisseria meningitidisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_487
Super-classes obo:NCBITaxon_482c

Ascomycotac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_4890
Super-classes obo:NCBITaxon_451864c
Sub-classes obo:NCBITaxon_716545c

Saccharomycetesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_4891
Super-classes obo:NCBITaxon_147537c
Sub-classes obo:NCBITaxon_4892c

Saccharomycetalesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_4892
Super-classes obo:NCBITaxon_4891c
Sub-classes obo:NCBITaxon_27319c

Candida aurisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_498019
Super-classes obo:NCBITaxon_1540022c

Insectac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_50557
Super-classes obo:NCBITaxon_6960c
Sub-classes obo:NCBITaxon_85512c

Alcaligenaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_506
Super-classes obo:NCBITaxon_80840c
Sub-classes obo:NCBITaxon_517c

Ancylostoma duodenalec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_51022
Super-classes obo:NCBITaxon_29169c

Chlamydialesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_51291
Super-classes obo:NCBITaxon_204429c
Sub-classes obo:NCBITaxon_809c

Bordetellac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_517
Super-classes obo:NCBITaxon_506c
Sub-classes obo:NCBITaxon_520c

Culex pipiens complexc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_518105
Super-classes obo:NCBITaxon_53527c
Sub-classes obo:NCBITaxon_7176c

Bordetella pertussisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_520
Super-classes obo:NCBITaxon_517c

Sarcoptidaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_52281
Super-classes obo:NCBITaxon_83158c
Sub-classes obo:NCBITaxon_474019c

Sarcoptesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_52282
Super-classes obo:NCBITaxon_474019c
Sub-classes obo:NCBITaxon_52283c

Sarcoptes scabieic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_52283
Super-classes obo:NCBITaxon_52282c

Ancylostomatinaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_53469
Super-classes obo:NCBITaxon_33278c
Sub-classes obo:NCBITaxon_29169c

Culex c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_53527
Super-classes obo:NCBITaxon_7174c
Sub-classes obo:NCBITaxon_518105c

Stegomyiac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_53541
Super-classes obo:NCBITaxon_7158c
Sub-classes http://purl.obolibrary.obo/obo/NCBITaxon_7160c
obo:NCBITaxon_7159c

Culicinic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_53550
Super-classes obo:NCBITaxon_43817c
Sub-classes obo:NCBITaxon_7174c

Enterobacteriaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_543
Super-classes obo:NCBITaxon_91347c
Sub-classes obo:NCBITaxon_590c
obo:NCBITaxon_620c
obo:NCBITaxon_570c
obo:NCBITaxon_561c

Salmonella enterica subsp. enterica serovar Paratyphi Ac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_54388
Super-classes obo:NCBITaxon_59201c

Salmonella bongoric # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_54736
Super-classes obo:NCBITaxon_590c

Herpesviralesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_548681
Super-classes obo:NCBITaxon_35237c
Sub-classes obo:NCBITaxon_10292c

Coccidioidesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_5500
Super-classes obo:NCBITaxon_1593277c
Sub-classes obo:NCBITaxon_199306c
obo:NCBITaxon_5501c

Coccidioides immitisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_5501
Super-classes obo:NCBITaxon_5500c

Amoebozoac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_554915
Super-classes obo:NCBITaxon_2759c
Sub-classes obo:NCBITaxon_555406c

Archamoebaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_555406
Super-classes obo:NCBITaxon_554915c
Sub-classes obo:NCBITaxon_33084c

Escherichiac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_561
Super-classes obo:NCBITaxon_543c
Sub-classes obo:NCBITaxon_562c

Escherichia colic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_562
Super-classes obo:NCBITaxon_561c
Sub-classes obo:NCBITaxon_1045010c

Kinetoplastidac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_5653
Super-classes obo:NCBITaxon_33682c
Sub-classes obo:NCBITaxon_5654c

Trypanosomatidaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_5654
Super-classes obo:NCBITaxon_5653c
Sub-classes obo:NCBITaxon_5690c

Bundibugyo ebolavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_565995
Super-classes obo:NCBITaxon_186536c

Trypanosomac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_5690
Super-classes obo:NCBITaxon_5654c
Sub-classes obo:NCBITaxon_47570c

Trypanosoma cruzic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_5693
Super-classes obo:NCBITaxon_47570c

Klebsiellac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_570
Super-classes obo:NCBITaxon_543c
Sub-classes obo:NCBITaxon_39824c

Diplomonadidac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_5738
Super-classes obo:NCBITaxon_207245c
Sub-classes obo:NCBITaxon_5739c

Hexamitidaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_5739
Super-classes obo:NCBITaxon_5738c
Sub-classes obo:NCBITaxon_68459c

Giardiac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_5740
Super-classes obo:NCBITaxon_68459c
Sub-classes obo:NCBITaxon_5741c

Giardia intestinalisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_5741
Super-classes obo:NCBITaxon_5740c

Entamoebac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_5758
Super-classes obo:NCBITaxon_33084c

Apicomplexac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_5794
Super-classes obo:NCBITaxon_33630c
Sub-classes obo:NCBITaxon_422676c
obo:NCBITaxon_1280412c

Coccidiac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_5796
Super-classes obo:NCBITaxon_1280412c
Sub-classes obo:NCBITaxon_75739c

Eimeriidaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_5799
Super-classes obo:NCBITaxon_423054c
Sub-classes obo:NCBITaxon_44417c

Cryptosporidiumc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_5806
Super-classes obo:NCBITaxon_35082c
Sub-classes obo:NCBITaxon_5807c
obo:NCBITaxon_237895c

Cryptosporidium parvumc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_5807
Super-classes obo:NCBITaxon_5806c

Haemosporidac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_5819
Super-classes obo:NCBITaxon_422676c
Sub-classes obo:NCBITaxon_1639119c

Plasmodiumc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_5820
Super-classes obo:NCBITaxon_1639119c
Sub-classes obo:NCBITaxon_418103c
obo:NCBITaxon_418107c

Plasmodium falciparumc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_5833
Super-classes obo:NCBITaxon_418107c

Plasmodium vivaxc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_5855
Super-classes obo:NCBITaxon_418103c

Plasmodium malariaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_5858
Super-classes obo:NCBITaxon_418103c

Salmonellac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_590
Super-classes obo:NCBITaxon_543c
Sub-classes obo:NCBITaxon_28901c
obo:NCBITaxon_54736c

Salmonella enterica subsp. entericac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_59201
Super-classes obo:NCBITaxon_28901c
Sub-classes obo:NCBITaxon_54388c
obo:NCBITaxon_90370c

Eumetazoac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6072
Super-classes obo:NCBITaxon_33208c
Sub-classes obo:NCBITaxon_33213c

Platyhelminthesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6157
Super-classes obo:NCBITaxon_33213c
Sub-classes obo:NCBITaxon_6178c

Trematodac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6178
Super-classes obo:NCBITaxon_6157c
Sub-classes obo:NCBITaxon_6179c

Digeneac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6179
Super-classes obo:NCBITaxon_6178c
Sub-classes obo:NCBITaxon_6180c

Strigeididac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6180
Super-classes obo:NCBITaxon_6179c
Sub-classes obo:NCBITaxon_31244c

Schistosomac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6181
Super-classes obo:NCBITaxon_31245c
Sub-classes obo:NCBITaxon_6185c
obo:NCBITaxon_6183c

Schistosoma mansonic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6183
Super-classes obo:NCBITaxon_6181c

Schistosoma haematobiumc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6185
Super-classes obo:NCBITaxon_6181c

Shigellac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_620
Super-classes obo:NCBITaxon_543c
Sub-classes obo:NCBITaxon_624c
obo:NCBITaxon_622c
obo:NCBITaxon_623c

Shigella dysenteriaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_622
Super-classes obo:NCBITaxon_620c

Shigella flexneric # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_623
Super-classes obo:NCBITaxon_620c

Nematodac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6231
Super-classes obo:NCBITaxon_1206794c
Sub-classes obo:NCBITaxon_119089c
obo:NCBITaxon_119088c

Rhabditidac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6236
Super-classes obo:NCBITaxon_119089c
Sub-classes obo:NCBITaxon_6308c

Shigella sonneic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_624
Super-classes obo:NCBITaxon_620c

Yersinia c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_629
Super-classes obo:NCBITaxon_1903411c
Sub-classes obo:NCBITaxon_630c
obo:NCBITaxon_1649845c

Yersinia enterocoliticac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_630
Super-classes obo:NCBITaxon_629c

Strongylidac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6308
Super-classes obo:NCBITaxon_6236c
Sub-classes obo:NCBITaxon_33277c

Yersinia pestisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_632
Super-classes obo:NCBITaxon_1649845c

Trichocephalidac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6329
Super-classes obo:NCBITaxon_1457286c
Sub-classes obo:NCBITaxon_6332c

Trichinellidaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6332
Super-classes obo:NCBITaxon_6329c
Sub-classes obo:NCBITaxon_6333c

Trichinellac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6333
Super-classes obo:NCBITaxon_6332c
Sub-classes obo:NCBITaxon_45882c
obo:NCBITaxon_144512c
obo:NCBITaxon_6336c
obo:NCBITaxon_6335c
obo:NCBITaxon_6334c

Trichinella spiralisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6334
Super-classes obo:NCBITaxon_6333c

Trichinella nativac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6335
Super-classes obo:NCBITaxon_6333c

Trichinella nelsonic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6336
Super-classes obo:NCBITaxon_6333c

Vibrionaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_641
Super-classes obo:NCBITaxon_135623c
Sub-classes obo:NCBITaxon_662c

Zika virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_64320
Super-classes obo:NCBITaxon_297696c

Lujo mammarenavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_649188
Super-classes obo:NCBITaxon_1653394c

Vibrioc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_662
Super-classes obo:NCBITaxon_641c
Sub-classes obo:NCBITaxon_666c
obo:NCBITaxon_717610c
obo:NCBITaxon_672c

Arthropodac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6656
Super-classes obo:NCBITaxon_88770c
Sub-classes obo:NCBITaxon_6843c
obo:NCBITaxon_197563c

Vibrio choleraec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_666
Super-classes obo:NCBITaxon_662c
Sub-classes obo:NCBITaxon_127906c

Vibrio parahaemolyticusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_670
Super-classes obo:NCBITaxon_717610c

Vibrio vulnificusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_672
Super-classes obo:NCBITaxon_662c

Cheliceratac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6843
Super-classes obo:NCBITaxon_6656c
Sub-classes obo:NCBITaxon_6854c

Giardiinaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_68459
Super-classes obo:NCBITaxon_5739c
Sub-classes obo:NCBITaxon_5740c

delta/epsilon subdivisionsc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_68525
Super-classes obo:NCBITaxon_1224c
Sub-classes obo:NCBITaxon_29547c

Arachnidac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6854
Super-classes obo:NCBITaxon_6843c
Sub-classes obo:NCBITaxon_6933c

Sedoreovirinaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_689832
Super-classes obo:NCBITaxon_10880c
Sub-classes obo:NCBITaxon_10912c

Acaric # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6933
Super-classes obo:NCBITaxon_6854c
Sub-classes obo:NCBITaxon_6946c

Coronavirinaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_693995
Super-classes obo:NCBITaxon_11118c
Sub-classes obo:NCBITaxon_694002c
obo:NCBITaxon_693996c

Alphacoronavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_693996
Super-classes obo:NCBITaxon_693995c
Sub-classes obo:NCBITaxon_28295c

Betacoronavirusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_694002
Super-classes obo:NCBITaxon_693995c
Sub-classes obo:NCBITaxon_227859c
obo:NCBITaxon_1335626c

Acariformesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6946
Super-classes obo:NCBITaxon_6933c
Sub-classes obo:NCBITaxon_83137c

Astigmatac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6951
Super-classes obo:NCBITaxon_83137c
Sub-classes obo:NCBITaxon_223472c

Hexapodac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_6960
Super-classes obo:NCBITaxon_197562c
Sub-classes obo:NCBITaxon_50557c

Pasteurellaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_712
Super-classes obo:NCBITaxon_135625c
Sub-classes obo:NCBITaxon_724c

Dipterac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_7147
Super-classes obo:NCBITaxon_33392c
Sub-classes obo:NCBITaxon_7148c

Nematocerac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_7148
Super-classes obo:NCBITaxon_7147c
Sub-classes obo:NCBITaxon_43786c

Culicidaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_7157
Super-classes obo:NCBITaxon_41827c
Sub-classes obo:NCBITaxon_43817c
obo:NCBITaxon_43816c

Aedesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_7158
Super-classes obo:NCBITaxon_1056966c
Sub-classes obo:NCBITaxon_53541c

Aedes aegyptic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_7159
Super-classes obo:NCBITaxon_53541c

Anopheles c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_7164
Super-classes obo:NCBITaxon_43816c
Sub-classes obo:NCBITaxon_44482c

saccharomycetac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_716545
Super-classes obo:NCBITaxon_4890c
Sub-classes obo:NCBITaxon_147538c
obo:NCBITaxon_147537c

leotiomycetac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_716546
Super-classes obo:NCBITaxon_147538c
Sub-classes obo:NCBITaxon_147545c

Culex c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_7174
Super-classes obo:NCBITaxon_53550c
Sub-classes obo:NCBITaxon_53527c

Culex quinquefasciatusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_7176
Super-classes obo:NCBITaxon_518105c

Vibrio harveyi groupc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_717610
Super-classes obo:NCBITaxon_662c
Sub-classes obo:NCBITaxon_670c

Thiotrichalesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_72273
Super-classes obo:NCBITaxon_1236c
Sub-classes obo:NCBITaxon_34064c

Pseudomonadalesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_72274
Super-classes obo:NCBITaxon_1236c
Sub-classes obo:NCBITaxon_468c

Helicobacteraceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_72293
Super-classes obo:NCBITaxon_213849c
Sub-classes obo:NCBITaxon_209c

Campylobacteraceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_72294
Super-classes obo:NCBITaxon_213849c
Sub-classes obo:NCBITaxon_194c

Haemophilusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_724
Super-classes obo:NCBITaxon_712c
Sub-classes obo:NCBITaxon_727c
obo:NCBITaxon_730c

Haemophilus influenzaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_727
Super-classes obo:NCBITaxon_724c

[Haemophilus] ducreyic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_730
Super-classes obo:NCBITaxon_724c

Pterygotac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_7496
Super-classes obo:NCBITaxon_85512c
Sub-classes obo:NCBITaxon_33340c

Eucoccidioridac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_75739
Super-classes obo:NCBITaxon_5796c
Sub-classes obo:NCBITaxon_423054c

Rickettsialesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_766
Super-classes obo:NCBITaxon_28211c
Sub-classes obo:NCBITaxon_942c
obo:NCBITaxon_775c

Anaplasmac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_768
Super-classes obo:NCBITaxon_942c
Sub-classes obo:NCBITaxon_106179c

Nidoviralesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_76804
Super-classes obo:NCBITaxon_35278c
Sub-classes obo:NCBITaxon_11118c

Chordatac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_7711
Super-classes obo:NCBITaxon_33511c
Sub-classes obo:NCBITaxon_89593c

Vertebratac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_7742
Description

authority: Vertebrata Cuvier, 1812

Super-classes obo:NCBITaxon_89593c
Sub-classes obo:NCBITaxon_7776c

Rickettsiaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_775
Super-classes obo:NCBITaxon_766c
Sub-classes obo:NCBITaxon_33988c

Coxiella c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_776
Super-classes obo:NCBITaxon_118968c
Sub-classes obo:NCBITaxon_777c

Mycobacterium tuberculosis complexc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_77643
Super-classes obo:NCBITaxon_1763c
Sub-classes obo:NCBITaxon_1773c

Coxiella burnetiic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_777
Super-classes obo:NCBITaxon_776c

Gnathostomatac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_7776
Super-classes obo:NCBITaxon_7742c
Sub-classes obo:NCBITaxon_117570c

Rickettsiac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_780
Super-classes obo:NCBITaxon_33988c
Sub-classes obo:NCBITaxon_114292c
obo:NCBITaxon_114277c

Rickettsia prowazekiic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_782
Super-classes obo:NCBITaxon_114292c

Rickettsia rickettsiic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_783
Super-classes obo:NCBITaxon_114277c

Rickettsia typhic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_785
Super-classes obo:NCBITaxon_114292c

Burkholderialesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_80840
Super-classes obo:NCBITaxon_28216c
Sub-classes obo:NCBITaxon_119060c
obo:NCBITaxon_506c

Chlamydiaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_809
Super-classes obo:NCBITaxon_51291c
Sub-classes obo:NCBITaxon_1113537c

Guaroa virusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_80941
Super-classes obo:NCBITaxon_1933274c

Chlamydiac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_810
Super-classes obo:NCBITaxon_1113537c
Sub-classes obo:NCBITaxon_83554c
obo:NCBITaxon_813c

Chlamydia trachomatisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_813
Super-classes obo:NCBITaxon_810c

Sarcopterygiic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_8287
Super-classes obo:NCBITaxon_117571c
Sub-classes obo:NCBITaxon_1338369c

Sarcoptiformesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_83137
Super-classes obo:NCBITaxon_6946c
Sub-classes obo:NCBITaxon_6951c

Sarcoptoideac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_83158
Super-classes obo:NCBITaxon_223472c
Sub-classes obo:NCBITaxon_52281c

Chlamydia psittacic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_83554
Super-classes obo:NCBITaxon_810c

Sauropsidac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_8457
Super-classes obo:NCBITaxon_32524c
Sub-classes obo:NCBITaxon_32561c

Archosauriac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_8492
Super-classes obo:NCBITaxon_1329799c
Sub-classes obo:NCBITaxon_436486c

Corynebacterialesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_85007
Super-classes obo:NCBITaxon_1760c
Sub-classes obo:NCBITaxon_1653c
obo:NCBITaxon_1762c

Dicondyliac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_85512
Super-classes obo:NCBITaxon_50557c
Sub-classes obo:NCBITaxon_7496c

Bacillus cereus groupc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_86661
Super-classes obo:NCBITaxon_1386c
Sub-classes obo:NCBITaxon_1392c

Avesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_8782
Super-classes obo:NCBITaxon_436492c
Sub-classes obo:NCBITaxon_8825c

Neognathaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_8825
Super-classes obo:NCBITaxon_8782c
Sub-classes obo:NCBITaxon_1549675c

Anseriformesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_8826
Super-classes obo:NCBITaxon_1549675c
Sub-classes obo:NCBITaxon_8830c

Anatidaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_8830
Super-classes obo:NCBITaxon_8826c

Cyclospora cayetanensisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_88456
Super-classes obo:NCBITaxon_44417c

Panarthropodac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_88770
Super-classes obo:NCBITaxon_1206794c
Sub-classes obo:NCBITaxon_6656c

Craniatac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_89593
Super-classes obo:NCBITaxon_7711c
Sub-classes obo:NCBITaxon_7742c

Galliformesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_8976
Super-classes obo:NCBITaxon_1549675c
Sub-classes obo:NCBITaxon_9005c

Phasianidaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9005
Super-classes obo:NCBITaxon_8976c
Sub-classes obo:NCBITaxon_466552c
obo:NCBITaxon_466544c
obo:NCBITaxon_9072c

Gallusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9030
Super-classes obo:NCBITaxon_9072c
Sub-classes obo:NCBITaxon_9031c

Gallus gallusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9031
Super-classes obo:NCBITaxon_9030c

Salmonella enterica subsp. enterica serovar Typhic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_90370
Super-classes obo:NCBITaxon_59201c

Phasianinaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9072
Super-classes obo:NCBITaxon_9005c
Sub-classes obo:NCBITaxon_9030c

Coturnixc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9090
Super-classes obo:NCBITaxon_466544c
Sub-classes obo:NCBITaxon_93934c

Staphylococcaceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_90964
Super-classes obo:NCBITaxon_1385c
Sub-classes obo:NCBITaxon_1279c

Acinetobacter calcoaceticus/baumannii complexc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_909768
Super-classes obo:NCBITaxon_469c
Sub-classes obo:NCBITaxon_470c

Meleagrisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9102
Super-classes obo:NCBITaxon_466552c
Sub-classes obo:NCBITaxon_9103c

Meleagris gallopavoc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9103
Super-classes obo:NCBITaxon_9102c

Bacillic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_91061
Super-classes obo:NCBITaxon_1239c
Sub-classes obo:NCBITaxon_1385c
obo:NCBITaxon_186826c

Enterobacteralesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_91347
Super-classes obo:NCBITaxon_1236c
Sub-classes obo:NCBITaxon_543c
obo:NCBITaxon_1903411c

Cetartiodactylac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_91561
Super-classes obo:NCBITaxon_314145c
Sub-classes obo:NCBITaxon_35497c
obo:NCBITaxon_9845c

Eutheriac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9347
Super-classes obo:NCBITaxon_32525c
Sub-classes obo:NCBITaxon_1437010c

Coturnix japonicac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_93934
Super-classes obo:NCBITaxon_9090c

Anaplasmataceaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_942
Super-classes obo:NCBITaxon_766c
Sub-classes obo:NCBITaxon_943c
obo:NCBITaxon_768c

Ehrlichiac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_943
Super-classes obo:NCBITaxon_942c
Sub-classes obo:NCBITaxon_106178c

Primatesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9443
Super-classes obo:NCBITaxon_314146c
Sub-classes obo:NCBITaxon_376913c

Ehrlichia chaffeensisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_945
Super-classes obo:NCBITaxon_106178c

Anaplasma phagocytophilumc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_948
Super-classes obo:NCBITaxon_106179c

Catarrhinic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9526
Super-classes obo:NCBITaxon_314293c
Sub-classes obo:NCBITaxon_314294c

Cercopithecidaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9527
Super-classes obo:NCBITaxon_314294c
Sub-classes obo:NCBITaxon_9528c

Cercopithecinaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9528
Super-classes obo:NCBITaxon_9527c
Sub-classes obo:NCBITaxon_9539c

Macacac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9539
Super-classes obo:NCBITaxon_9528c
Sub-classes obo:NCBITaxon_9541c
obo:NCBITaxon_9544c

Macaca fascicularisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9541
Super-classes obo:NCBITaxon_9539c

Macaca mulattac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9544
Super-classes obo:NCBITaxon_9539c

NCBITaxon_9606c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9606
Super-classes obo:NCBITaxon_2759c

Canidaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9608
Super-classes obo:NCBITaxon_379584c
Sub-classes obo:NCBITaxon_9611c

Canisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9611
Super-classes obo:NCBITaxon_9608c
Sub-classes obo:NCBITaxon_9612c

Canis lupusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9612
Super-classes obo:NCBITaxon_9611c
Sub-classes obo:NCBITaxon_9615c

Canis lupus familiarisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9615
Super-classes obo:NCBITaxon_9612c

Perissodactylac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9787
Super-classes obo:NCBITaxon_314145c
Sub-classes obo:NCBITaxon_9788c

Equidaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9788
Super-classes obo:NCBITaxon_9787c
Sub-classes obo:NCBITaxon_9789c

Equusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9789
Super-classes obo:NCBITaxon_9788c
Sub-classes obo:NCBITaxon_35510c

Equus caballusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9796
Super-classes obo:NCBITaxon_35510c

Suidaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9821
Super-classes obo:NCBITaxon_35497c
Sub-classes obo:NCBITaxon_9822c

Susc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9822
Super-classes obo:NCBITaxon_9821c
Sub-classes obo:NCBITaxon_9823c

Sus scrofac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9823
Super-classes obo:NCBITaxon_9822c

Ruminantiac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9845
Super-classes obo:NCBITaxon_91561c
Sub-classes obo:NCBITaxon_35500c

Bovidaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9895
Super-classes obo:NCBITaxon_35500c
Sub-classes obo:NCBITaxon_9963c
obo:NCBITaxon_27592c

Bosc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9903
Super-classes obo:NCBITaxon_27592c
Sub-classes obo:NCBITaxon_9913c

Bos taurusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9913
Super-classes obo:NCBITaxon_9903c

Caprac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9922
Super-classes obo:NCBITaxon_9963c
Sub-classes obo:NCBITaxon_9925c

Capra hircusc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9925
Super-classes obo:NCBITaxon_9922c

Ovisc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9935
Super-classes obo:NCBITaxon_9963c
Sub-classes obo:NCBITaxon_9940c

Ovis ariesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9940
Super-classes obo:NCBITaxon_9935c

Caprinaec # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9963
Super-classes obo:NCBITaxon_9895c
Sub-classes obo:NCBITaxon_9935c
obo:NCBITaxon_9922c

contraindicationc # Classes

URI http://purl.obolibrary.org/obo/OAE_0000055
Super-classes obo:BFO_0000016c
Sub-classes obo:VO_0000207c
obo:APOLLO_SV_00000378c

planned processc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000011
Super-classes obo:BFO_0000015c
Sub-classes obo:ERO_0000657c
obo:VO_0000590c
obo:APOLLO_SV_00000029c
obo:APOLLO_SV_00000033c
obo:APOLLO_SV_00000152c
obo:APOLLO_SV_00000026c
obo:APOLLO_SV_00000005c
obo:APOLLO_SV_00000797c
obo:APOLLO_SV_00000524c
obo:APOLLO_SV_00000389c
obo:OBI_0001173c
obo:OBIws_0000050c
obo:APOLLO_SV_00000796c
obo:OBI_0200000c
obo:OGMS_0000090c
obo:APOLLO_SV_00000008c
obo:APOLLO_SV_00000579c
obo:APOLLO_SV_00000545c

processed materialc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000047
Super-classes obo:BFO_0000040c
Sub-classes obo:OBI_0000968c
obo:VO_0000001c

intervention designc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000115
Super-classes obo:OBI_0500000c

data encodingc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000227
Super-classes obo:IAO_0000572c

organizationc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000245
Sub-classes obo:OMRSE_00000056c
obo:OMRSE_00000057c

averaging objectivec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000425
Super-classes obo:OBI_0200166c

OBI_0000471c # Classes

URI http://purl.obolibrary.org/obo/OBI_0000471
Sub-classes obo:APOLLO_SV_00000090c

scattered molecular aggregatec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000576
Super-classes obo:BFO_0000027c

data representational modelc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000658
Super-classes obo:IAO_0000033c
Sub-classes obo:APOLLO_SV_00000403c
obo:APOLLO_SV_00000417c
obo:APOLLO_SV_00000425c
obo:APOLLO_SV_00000462c
obo:APOLLO_SV_00000424c

center valuec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000674
Super-classes obo:IAO_0000027c

average valuec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000679
Super-classes obo:IAO_0000027c
Sub-classes obo:APOLLO_SV_00000043c
obo:APOLLO_SV_00000513c
obo:APOLLO_SV_00000514c
obo:STATO_0000398c
obo:APOLLO_SV_00000316c
obo:APOLLO_SV_00000453c
obo:APOLLO_SV_00000311c

graph of verticesc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000714
Super-classes obo:IAO_0000038c
Sub-classes obo:APOLLO_SV_00000527c

devicec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000968
Description

would include reagents

Super-classes obo:OBI_0000047c
Sub-classes obo:OBI_0400107c

computer clusterc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001092
Super-classes obo:OBI_0400107c

servicec # Classes

URI http://purl.obolibrary.org/obo/OBI_0001173
Super-classes obo:OBI_0000011c
Sub-classes obo:OBI_0001530c

environmental history designc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001226
Super-classes obo:OBI_0500000c

disease state designc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001293
Super-classes obo:OBI_0500000c

pathogenicity designc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001454
Super-classes obo:OBI_0500000c

data servicec # Classes

URI http://purl.obolibrary.org/obo/OBI_0001530
Description

Information content entity was used as specified input and output since it was more appropriate then data item or dataset.

Super-classes obo:OBI_0001173c

rate measurement datumc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001554
Super-classes obo:IAO_0000032c
Sub-classes obo:APOLLO_SV_00000444c
obo:APOLLO_SV_00000445c
obo:APOLLO_SV_00000472c
obo:APOLLO_SV_00000442c
obo:APOLLO_SV_00000512c
obo:APOLLO_SV_00000413c
obo:APOLLO_SV_00000191c
obo:APOLLO_SV_00000412c

investigation descriptionc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001615
Source NIAID GSCID-BRC
Super-classes obo:IAO_0000300c

investigation identifierc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001628
Source NIAID GSCID-BRC
Super-classes obo:IAO_0000577c

grant identifierc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001629
Source NIAID GSCID-BRC
Super-classes obo:IAO_0020000c

OBI_0001931c # Classes

URI http://purl.obolibrary.org/obo/OBI_0001931
Sub-classes obo:APOLLO_SV_00000575c
obo:APOLLO_SV_00000430c
obo:APOLLO_SV_00000241c
obo:APOLLO_SV_00000576c

OBI_0001933c # Classes

URI http://purl.obolibrary.org/obo/OBI_0001933

systematic review study designc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001958
Super-classes obo:OBI_0500000c

digital object identifierc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002110
Super-classes obo:IAO_0020000c

organismc # Classes

URI http://purl.obolibrary.org/obo/OBI_0100026
Sub-classes obo:APOLLO_SV_00000373c
obo:APOLLO_SV_00000374c
obo:NCBITaxon_2c
obo:APOLLO_SV_00000206c
obo:APOLLO_SV_00000205c
obo:APOLLO_SV_00000237c
obo:APOLLO_SV_00000302c
obo:APOLLO_SV_00000407c
obo:APOLLO_SV_00000238c
obo:NCBITaxon_2759c
obo:NCBITaxon_10239c
obo:APOLLO_SV_00000207c

data transformationc # Classes

URI http://purl.obolibrary.org/obo/OBI_0200000
Super-classes obo:OBI_0000011c
Restrictions obo:OBI_0000417op some obo:OBI_0200166c
Sub-classes obo:APOLLO_SV_00000518c
obo:APOLLO_SV_00000566c
obo:OBI_0200170c

data transformation objectivec # Classes

URI http://purl.obolibrary.org/obo/OBI_0200166
Super-classes obo:IAO_0000005c
Sub-classes obo:OBI_0000425c

averaging data transformationc # Classes

URI http://purl.obolibrary.org/obo/OBI_0200170
Super-classes obo:OBI_0200000c

observation designc # Classes

URI http://purl.obolibrary.org/obo/OBI_0300311
Super-classes obo:OBI_0500000c

calculated datumc # Classes

URI http://purl.obolibrary.org/obo/OBI_0302867
Description

APOLLO DEVELOPERS: We need to check whether OBI changes the label and the hierarchical place of this class.

Super-classes obo:IAO_0000109c
Sub-classes obo:APOLLO_SV_00000479c
obo:APOLLO_SV_00000428c
obo:APOLLO_SV_00000024c
obo:APOLLO_SV_00000577c
obo:APOLLO_SV_00000434c
obo:APOLLO_SV_00000050c

digital curationc # Classes

URI http://purl.obolibrary.org/obo/OBI_0302914
Super-classes obo:IAO_0000572c

computerc # Classes

URI http://purl.obolibrary.org/obo/OBI_0400107
Super-classes obo:OBI_0000968c
Sub-classes obo:OBI_0001092c

study designc # Classes

URI http://purl.obolibrary.org/obo/OBI_0500000
Super-classes obo:IAO_0000104c
Sub-classes obo:OBI_0001958c
obo:OBI_0001293c
obo:OBI_0000115c
obo:APOLLO_SV_00000326c
obo:OBI_0001226c
obo:OBI_0001454c
obo:OBI_0500020c
obo:OBI_0300311c

time series designc # Classes

URI http://purl.obolibrary.org/obo/OBI_0500020
Super-classes obo:OBI_0500000c

software executionc # Classes

URI http://purl.obolibrary.org/obo/OBIws_0000050
Super-classes obo:OBI_0000011c
Sub-classes obo:OBIws_0000104c

web service executionc # Classes

URI http://purl.obolibrary.org/obo/OBIws_0000104
Super-classes obo:OBIws_0000050c

clinical findingc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000014
Super-classes obo:IAO_0000027c
Sub-classes obo:OGMS_0000018c

laboratory findingc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000018
Super-classes obo:OGMS_0000014c

phenotypec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000023
Super-classes obo:BFO_0000019c
Sub-classes obo:OGMS_0000027c

clinical phenotypec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000027
Super-classes obo:OGMS_0000023c
Sub-classes obo:APOLLO_SV_00000574c

diseasec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000031
Super-classes obo:BFO_0000016c
Sub-classes obo:APOLLO_SV_00000239c

homeostasisc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000032
Super-classes obo:BFO_0000016c

disorderc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000045
Super-classes obo:BFO_0000040c

disease coursec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000063
Super-classes obo:BFO_0000015c

extended organismc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000087
Super-classes obo:BFO_0000027c

treatmentc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000090
Description

Apollo-SV currently defines two subclasses of treatment. See vaccination and antiviral treatment.

Super-classes obo:OBI_0000011c
Sub-classes obo:APOLLO_SV_00000318c
obo:APOLLO_SV_00000142c

life coursec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000092
Super-classes obo:BFO_0000015c

health care processc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000096
Super-classes obo:BFO_0000015c
Sub-classes obo:OGMS_0000097c

health care encounterc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000097
Super-classes obo:OGMS_0000096c
Sub-classes obo:OGMS_0000100c
obo:OGMS_0000099c
obo:OGMS_0000101c
obo:OGMS_0000098c

hospitalizationc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000098
Super-classes obo:OGMS_0000097c

outpatient encounterc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000099
Super-classes obo:OGMS_0000097c

inpatient encounterc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000100
Super-classes obo:OGMS_0000097c
Sub-classes obo:APOLLO_SV_00000587c

ED encounterc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000101
Super-classes obo:OGMS_0000097c

relapsec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000105
Super-classes obo:BFO_0000015c

unique resource locatorc # Classes

URI http://purl.obolibrary.org/obo/OMIABIS_0000019
Super-classes obo:IAO_0020000c
Sub-classes obo:APOLLO_SV_00000539c

human social rolec # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000001
Super-classes obo:OMRSE_00000026c
Restrictions obo:RO_0000052op some obo:NCBITaxon_9606c
Sub-classes obo:OMRSE_00000058c

gender rolec # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000007
Super-classes obo:BFO_0000023c
Sub-classes obo:OMRSE_00000009c
obo:OMRSE_00000008c

male gender rolec # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000008
Super-classes obo:OMRSE_00000007c

female gender rolec # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000009
Super-classes obo:OMRSE_00000007c

human health care rolec # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000010
Description

Mathias Brochhausen

Super-classes obo:OMRSE_00000024c
Sub-classes obo:OMRSE_00000011c

patient rolec # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000011
Super-classes obo:OMRSE_00000010c

health care provider organization rolec # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000015
Description

Definition needed, but the idea is that we want to differentiate between provider and payer organizations. Some organizaitons have both roles (e.g., UPMC has a Hospital Division, a Physician Divison, and an Insurance Division).

Super-classes obo:OMRSE_00000027c
Sub-classes obo:OMRSE_00000054c

collection of organismsc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000022
Description

Any arbitrary collection of organisms. They need not be of the same taxonomic class.

Super-classes obo:BFO_0000027c

collection of humansc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000023
Description

An object aggregate all of whose components are human beings.

Super-classes obo:PCO_0000018c
Sub-classes obo:APOLLO_SV_00000030c
obo:APOLLO_SV_00000178c

role in human social processesc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000024
Description

Previous definition: A role played by an entity in human social processes.

Super-classes obo:BFO_0000023c
Sub-classes obo:OMRSE_00000025c
obo:OMRSE_00000010c

organization social rolec # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000025
Description

Defined class that we will ultimately move to an application ontology. We are leaving here for now until we determine which application ontology: it is likely going to be an ontology that does not currently (2012-06-05) exist.

Ditto for its current descendants.

Super-classes obo:OMRSE_00000024c
Sub-classes obo:OMRSE_00000027c

organism social rolec # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000026
Description

Previous definition: A role in human social processes played by an organism.

Super-classes obo:BFO_0000023c
Restrictions obo:RO_0000052op some obo:OBI_0100026c
Sub-classes obo:OMRSE_00000001c

organization health care rolec # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000027
Description

Previous definition: An organization social role played by an organization in health care processes.

Super-classes obo:OMRSE_00000025c
Sub-classes obo:OMRSE_00000015c

aggregate of organizationsc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000033
Description

It is often convenient to group organizations together that otherwise might not even interact with one another.

Super-classes obo:BFO_0000027c
Sub-classes obo:OMRSE_00000035c

aggregate of sovereign statesc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000034
Super-classes obo:OMRSE_00000035c

aggregate of geopolitical organizationsc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000035
Description

Examples: all sovereign states whose territory is part of North America, all British Crown Dependencies, all midwestern US States, all US dependencies, etc.

Super-classes obo:OMRSE_00000033c
Sub-classes obo:OMRSE_00000034c
obo:OMRSE_00000037c
obo:OMRSE_00000036c

aggregate of dependenciesc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000036
Super-classes obo:OMRSE_00000035c

aggregate of major administrative subdivisionsc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000037
Super-classes obo:OMRSE_00000035c

hospital functionc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000052
Super-classes obo:BFO_0000034c

school functionc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000053
Super-classes obo:BFO_0000034c

hospital rolec # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000054
Super-classes obo:OMRSE_00000015c

school rolec # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000055
Super-classes obo:BFO_0000023c
Sub-classes obo:OMRSE_00000059c
obo:OMRSE_00000065c
obo:OMRSE_00000060c

hospital organizationc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000056
Super-classes obo:OBI_0000245c

school organizationc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000057
Super-classes obo:OBI_0000245c

student rolec # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000058
Super-classes obo:OMRSE_00000001c

nursery school rolec # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000059
Description

Key motivating use case was Synthia synthetic population data.

Super-classes obo:OMRSE_00000055c

primary school rolec # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000060
Description

Key motivating use case was Synthia synthetic population data.

Super-classes obo:OMRSE_00000055c

architectural structurec # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000061
Description

"Building" is a subclass of this.

Super-classes obo:BFO_0000040c
Sub-classes obo:OMRSE_00000062c

facilityc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000062
Super-classes obo:OMRSE_00000061c
Sub-classes obo:OMRSE_00000102c
obo:APOLLO_SV_00000126c
obo:OMRSE_00000078c
obo:OMRSE_00000064c

hospital facilityc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000063
Super-classes obo:OMRSE_00000102c

school facilityc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000064
Super-classes obo:OMRSE_00000062c

secondary school rolec # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000065
Description

Key motivating use case was Synthia synthetic population data.

Super-classes obo:OMRSE_00000055c

housing unitc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000074
Description

Housing units are individuated by their residence functions.

Super-classes obo:BFO_0000040c

householdc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000076
Super-classes obo:BFO_0000040c

workplace facilityc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000078
Super-classes obo:OMRSE_00000062c

workplace functionc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000079
Super-classes obo:BFO_0000034c

racial identity datumc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000098
Super-classes obo:OMRSE_00000132c

health care facilityc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000102
Super-classes obo:OMRSE_00000062c
Sub-classes obo:OMRSE_00000063c

identity datumc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000132
Super-classes obo:IAO_0000030c
Sub-classes obo:OMRSE_00000098c

distancec # Classes

URI http://purl.obolibrary.org/obo/PATO_0000040
Super-classes obo:PATO_0001018c

biological sexc # Classes

URI http://purl.obolibrary.org/obo/PATO_0000047
Super-classes obo:BFO_0000019c
Sub-classes obo:PATO_0000384c
obo:PATO_0000383c

morphologyc # Classes

URI http://purl.obolibrary.org/obo/PATO_0000051
Super-classes obo:PATO_0001241c
Sub-classes obo:PATO_0000141c
obo:PATO_0000117c

PATO_0000117c # Classes

URI http://purl.obolibrary.org/obo/PATO_0000117
Super-classes obo:PATO_0000051c
Sub-classes obo:PATO_0001708c

PATO_0000122c # Classes

URI http://purl.obolibrary.org/obo/PATO_0000122
Super-classes obo:PATO_0001708c
Sub-classes obo:PATO_0002390c

PATO_0000125c # Classes

URI http://purl.obolibrary.org/obo/PATO_0000125
Super-classes obo:PATO_0001018c

structurec # Classes

URI http://purl.obolibrary.org/obo/PATO_0000141
Super-classes obo:PATO_0000051c
Sub-classes obo:PATO_0001961c

temperaturec # Classes

URI http://purl.obolibrary.org/obo/PATO_0000146
Super-classes obo:PATO_0001018c
Sub-classes obo:ENVO_09200000c

femalec # Classes

URI http://purl.obolibrary.org/obo/PATO_0000383
Super-classes obo:PATO_0000047c

malec # Classes

URI http://purl.obolibrary.org/obo/PATO_0000384
Super-classes obo:PATO_0000047c

physical qualityc # Classes

URI http://purl.obolibrary.org/obo/PATO_0001018
Super-classes obo:PATO_0001241c
Sub-classes obo:PATO_0000040c
obo:PATO_0000125c
http://purl.org/obo/owl/PATO#PATO_0001025c
obo:PATO_0000146c

physical object qualityc # Classes

URI http://purl.obolibrary.org/obo/PATO_0001241
Description

Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles.

Super-classes obo:BFO_0000019c
Sub-classes obo:PATO_0000051c
obo:PATO_0001018c

1-D extentc # Classes

URI http://purl.obolibrary.org/obo/PATO_0001708
Super-classes obo:PATO_0000117c
Sub-classes obo:PATO_0000122c

in contact withc # Classes

URI http://purl.obolibrary.org/obo/PATO_0001961
Super-classes obo:PATO_0000141c

radiusc # Classes

URI http://purl.obolibrary.org/obo/PATO_0002390
Super-classes obo:PATO_0000122c

PCO:collection of organismsc # Classes

URI http://purl.obolibrary.org/obo/PCO_0000000
Description

May be of the same or different species.

Super-classes obo:BFO_0000027c
Sub-classes obo:PCO_0000018c

populationc # Classes

URI http://purl.obolibrary.org/obo/PCO_0000001
Description

It is sometimes difficult to define the physical boundaries of a population. In the case of sexually reproducing organisms, the individuals within a population have the potential to reproduce with one another during the course of their lifetimes. 'Community', as often used to describe a group of humans, is a type of population. Classes for population already exist in IDO ('organism population', IDO_0000509) and OBI ('population', OBI_0000181). The definitions should be standardized across ontologies and only one term used.

Super-classes obo:PCO_0000018c
Restrictions obo:BFO_0000177op some obo:APOLLO_SV_00000104c
Sub-classes obo:APOLLO_SV_00000516c
obo:APOLLO_SV_00000195c

collection of organisms of the same speciesc # Classes

URI http://purl.obolibrary.org/obo/PCO_0000018
Super-classes obo:PCO_0000000c
Sub-classes obo:OMRSE_00000023c
obo:PCO_0000001c

effect size estimatec # Classes

URI http://purl.obolibrary.org/obo/STATO_0000085
Super-classes obo:IAO_0000109c
Sub-classes obo:STATO_0000245c

study group population sizec # Classes

URI http://purl.obolibrary.org/obo/STATO_0000088
Super-classes obo:APOLLO_SV_00000032c

true negative ratec # Classes

URI http://purl.obolibrary.org/obo/STATO_0000134
Super-classes obo:IAO_0000109c
Sub-classes obo:APOLLO_SV_00000381c
obo:APOLLO_SV_00000382c
http://purl.obolibrary.org/obo/apollo_sv/dev/apollo_sv.owl#APOLLO_SV_00000002c
http://purl.obolibrary.org/obo/apollo_sv/dev/apollo_sv.owl#APOLLO_SV_00000001c

true positive ratec # Classes

URI http://purl.obolibrary.org/obo/STATO_0000233
Super-classes obo:IAO_0000109c
Sub-classes obo:APOLLO_SV_00000383c
obo:APOLLO_SV_00000277c
http://purl.obolibrary.org/obo/apollo_sv/dev/apollo_sv.owl#APOLLO_SV_00000003c

relative riskc # Classes

URI http://purl.obolibrary.org/obo/STATO_0000245
Super-classes obo:STATO_0000085c

categorical variablec # Classes

URI http://purl.obolibrary.org/obo/STATO_0000252
Source https://onlinecourses.science.psu.edu/stat503/node/7
Super-classes obo:STATO_0000258c

variablec # Classes

URI http://purl.obolibrary.org/obo/STATO_0000258
Super-classes obo:IAO_0000027c
Sub-classes obo:STATO_0000252c

weighted arithmetic meanc # Classes

URI http://purl.obolibrary.org/obo/STATO_0000398
Super-classes obo:OBI_0000679c

anatomical structurec # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000061
Super-classes obo:UBERON_0000465c
Sub-classes obo:UBERON_0010000c
obo:UBERON_0000480c

material anatomical entityc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000465
Super-classes obo:BFO_0000040c
Sub-classes obo:UBERON_0000061c

anatomical systemc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000467
Super-classes obo:UBERON_0000480c
Sub-classes obo:UBERON_0002405c

tissuec # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000479
Description

Editor note: changed label and definition to reflect CARO2

Super-classes obo:UBERON_0010000c

anatomical groupc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000480
Super-classes obo:UBERON_0000061c
Sub-classes obo:UBERON_0000467c

immune systemc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0002405
Description

This class was created automatically from a combination of ontologies

Super-classes obo:UBERON_0000467c

multicellular anatomical structurec # Classes

URI http://purl.obolibrary.org/obo/UBERON_0010000
Super-classes obo:UBERON_0000061c
Sub-classes obo:UBERON_0000479c

life cycle temporal boundaryc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0035943
Super-classes obo:BFO_0000015c
Sub-classes obo:UBERON_0035944c

life-death temporal boundaryc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0035944
Super-classes obo:UBERON_0035943c

unitc # Classes

URI http://purl.obolibrary.org/obo/UO_0000000
Super-classes obo:IAO_0000030c
Sub-classes obo:APOLLO_SV_00000293c
obo:APOLLO_SV_00000295c
obo:APOLLO_SV_00000292c

UO_0000003c # Classes

URI http://purl.obolibrary.org/obo/UO_0000003
Super-classes obo:IAO_0000003c
Sub-classes obo:APOLLO_SV_00000014c
Members obo:UO_0000034

dimensionless unitc # Classes

URI http://purl.obolibrary.org/obo/UO_0000186
Super-classes obo:IAO_0000003c
Sub-classes obo:UO_0000190c

percentc # Classes

URI http://purl.obolibrary.org/obo/UO_0000187
Super-classes obo:UO_0000190c

ratioc # Classes

URI http://purl.obolibrary.org/obo/UO_0000190
Super-classes obo:UO_0000186c
Sub-classes obo:UO_0000187c
obo:UO_0000191c

fractionc # Classes

URI http://purl.obolibrary.org/obo/UO_0000191
Super-classes obo:UO_0000190c

rate unitc # Classes

URI http://purl.obolibrary.org/obo/UO_0000280
Super-classes obo:IAO_0000003c

vaccinec # Classes

URI http://purl.obolibrary.org/obo/VO_0000001
Super-classes obo:OBI_0000047c

vaccine contraindicationc # Classes

URI http://purl.obolibrary.org/obo/VO_0000207
Super-classes obo:OAE_0000055c

vaccine functionc # Classes

URI http://purl.obolibrary.org/obo/VO_0000278
Super-classes obo:BFO_0000034c

vaccine preparationc # Classes

URI http://purl.obolibrary.org/obo/VO_0000590
Super-classes obo:OBI_0000011c

obsolete specificity of case detectionc # Classes

URI http://purl.obolibrary.org/obo/apollo_sv/dev/apollo_sv.owl#APOLLO_SV_00000001
Description

deprecated due to malformed URI and created anew.

Super-classes obo:STATO_0000134c

obsolete specificity of treatment detectionc # Classes

URI http://purl.obolibrary.org/obo/apollo_sv/dev/apollo_sv.owl#APOLLO_SV_00000002
Description

Deprecated due to malformed URI and created anew.

Super-classes obo:STATO_0000134c

obsolete sensitivity of treatment detectionc # Classes

URI http://purl.obolibrary.org/obo/apollo_sv/dev/apollo_sv.owl#APOLLO_SV_00000003
Description

Deprecated due to malformed URI and created anew.

Super-classes obo:STATO_0000233c

news articlec # Classes

URI http://purl.org/obo/owl/FBcv#FBcv_0000209
Description

Originally imported into Apollo-SV for purpose of indexing in OBC.ide news articles relevant to infectious disease epidemiology.

Super-classes obo:IAO_0000310c

PATO_0001025c # Classes

URI http://purl.org/obo/owl/PATO#PATO_0001025
Super-classes obo:PATO_0001018c

genomic datac # Classes

URI http://www.ebi.ac.uk/efo/EFO_0004600
Super-classes obo:IAO_0000100c
Restrictions obo:IAO_0000136op some obo:OBI_0100026c

Obsolete Classc # Classes

URI http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
Sub-classes obo:APOLLO_SV_00000045c
obo:APOLLO_SV_00000095c
obo:APOLLO_SV_00000129c
obo:APOLLO_SV_00000076c
obo:APOLLO_SV_00000079c
obo:APOLLO_SV_00000175c
obo:APOLLO_SV_00000071c
obo:APOLLO_SV_00000077c
obo:APOLLO_SV_00000091c
obo:APOLLO_SV_00000111c
obo:APOLLO_SV_00000160c
obo:APOLLO_SV_00000180c

Object Properties

basis ofop # OPs

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000004
Super-properties oboInOwl:ObsoletePropertyop

obsolete is based onop # OPs

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000028
Description

p is based on e, if p is a purely intentional entity, e is an entity and p assumption/simulation that e exists regardless of the truth of this assumption.

Super-properties oboInOwl:ObsoletePropertyop

commissionsop # OPs

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000037
Domain(s) (obo:NCBITaxon_9606c or obo:OBI_0000245c)
Range(s) http://purl.obolibrary.org/obo/BFO_0000004 http://purl.obolibrary.org/obo/BFO_0000015 http://purl.obolibrary.org/obo/IAO_0000030

instantiatesop # OPs

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000057
Description

Barry Smith, Waclaw Kusnierczyk, Daniel Schober, Werner Ceusters, “Towards a Reference Terminology for Ontology Research and Development in the Biomedical Domain”, O. Bodenreider, ed., Proceedings of KR-MED, 2006, 57-66. Also available online at: http://ceur-ws.org/Vol-222.

Domain(s) obo:BFO_0000001c

simulatesop # OPs

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000067
Domain(s) obo:APOLLO_SV_00000070c
Range(s) obo:BFO_0000001c

causally_precedesop # OPs

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000116
Super-properties oboInOwl:ObsoletePropertyop

obsoleted_administrated byop # OPs

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000177
Super-properties oboInOwl:ObsoletePropertyop

has basis inop # OPs

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000543
Description

The relationship between a disposition and the quality that confers the disposition on the material entity in which they both inhere.

For example, the disposition of a piece of glass to bend light and the lattice structure of the glass (quality) that results in the bending of the light.

Domain(s) obo:BFO_0000016c
Range(s) obo:BFO_0000019c

BFO_0000050op # OPs

URI http://purl.obolibrary.org/obo/BFO_0000050

BFO_0000051op # OPs

URI http://purl.obolibrary.org/obo/BFO_0000051

is realized byop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000054
Super-properties owl:topObjectProperty
Inverse properties obo:BFO_0000055op
Domain(s) obo:BFO_0000017c
Range(s) obo:BFO_0000015c

realizesop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000055

preceded byop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000062
Source http://www.obofoundry.org/ro/#OBO_REL:preceded_by
Super-properties owl:topObjectProperty

precedesop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000063
Super-properties owl:topObjectProperty

occurs inop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000066
Description

Example: oocyte axis determination : The establishment, maintenance and elaboration of an axis in the oocyte. This process unfolds_in the oocyte

contains processop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000067
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-properties owl:topObjectProperty

is aggregate ofop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000075
Super-properties owl:topObjectProperty

exists atop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000108

BFO_0000111op # OPs

URI http://purl.obolibrary.org/obo/BFO_0000111

has material basis at all timesop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000113
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-properties owl:topObjectProperty

has occurrent partop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000117
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-properties owl:topObjectProperty

has proper occurrent partop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000118
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-properties obo:BFO_0000117op

has temporal partop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000121
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-properties obo:BFO_0000117op

part of occurrentop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000132
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-properties owl:topObjectProperty

proper temporal part ofop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000136
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-properties obo:BFO_0000139op obo:BFO_0000138op

BFO_0000137op # OPs

URI http://purl.obolibrary.org/obo/BFO_0000137

proper part of occurrentop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000138
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-properties obo:BFO_0000132op

temporal part ofop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000139
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-properties obo:BFO_0000132op

occupies temporal regionop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000155
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-properties obo:BFO_0000108op
Domain(s) obo:BFO_0000003c
Range(s) obo:BFO_0000008c

has temporal occupantop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000156
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-properties owl:topObjectProperty obo:BFO_0000157op
Domain(s) obo:BFO_0000008c
Range(s) obo:BFO_0000003c

during which existsop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000157

specifically depends on at some timeop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000169
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Domain(s) (obo:BFO_0000015c or obo:BFO_0000020c)
Range(s) http://purl.obolibrary.org/obo/BFO_0000015 http://purl.obolibrary.org/obo/BFO_0000020 ub209bL8802C13

BFO_0000177op # OPs

URI http://purl.obolibrary.org/obo/BFO_0000177

has proper temporal partop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000181
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-properties obo:BFO_0000121op obo:BFO_0000118op

history ofop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000184
Super-properties obo:BFO_0000066op
Domain(s) obo:BFO_0000015c
Range(s) obo:BFO_0000040c

has historyop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000185
Domain(s) obo:BFO_0000040c
Range(s) obo:BFO_0000015c

has measurement unit labelop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000039
Super-properties obo:BFO_0000051op
Range(s) obo:IAO_0000003c

is aboutop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000136

IAO_0000219op # OPs

URI http://purl.obolibrary.org/obo/IAO_0000219

is duration ofop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000413

has time stampop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000581
Super-properties obo:BFO_0000051op
Domain(s) obo:IAO_0000582c
Range(s) obo:IAO_0000416c

has measurement datumop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000583
Super-properties obo:BFO_0000051op
Domain(s) obo:IAO_0000582c
Range(s) http://purl.obolibrary.org/obo/IAO_0000109 ub209bL10317C13

IAO_0020012op # OPs

URI http://purl.obolibrary.org/obo/IAO_0020012
Super-properties oboInOwl:ObsoletePropertyop

IAO_0020018op # OPs

URI http://purl.obolibrary.org/obo/IAO_0020018
Super-properties oboInOwl:ObsoletePropertyop

OBI_0000293op # OPs

URI http://purl.obolibrary.org/obo/OBI_0000293

OBI_0000299op # OPs

URI http://purl.obolibrary.org/obo/OBI_0000299

OBI_0000308op # OPs

URI http://purl.obolibrary.org/obo/OBI_0000308
Super-properties oboInOwl:ObsoletePropertyop

OBI_0000312op # OPs

URI http://purl.obolibrary.org/obo/OBI_0000312

achieves_planned_objectiveop # OPs

URI http://purl.obolibrary.org/obo/OBI_0000417
Super-properties owl:topObjectProperty

ownsop # OPs

URI http://purl.obolibrary.org/obo/OMIABIS_0000008
Super-properties owl:topObjectProperty

is owned byop # OPs

URI http://purl.obolibrary.org/obo/OMIABIS_0000048
Super-properties owl:topObjectProperty

is enrolled in schoolop # OPs

URI http://purl.obolibrary.org/obo/OMRSE_00000070
Super-properties owl:topObjectProperty

is admitted to hospitalop # OPs

URI http://purl.obolibrary.org/obo/OMRSE_00000071
Super-properties owl:topObjectProperty

RO_0000052op # OPs

URI http://purl.obolibrary.org/obo/RO_0000052

is bearer ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0000053
Super-properties owl:topObjectProperty

RO_0000056op # OPs

URI http://purl.obolibrary.org/obo/RO_0000056

has_participantop # OPs

URI http://purl.obolibrary.org/obo/RO_0000057

RO_0000059op # OPs

URI http://purl.obolibrary.org/obo/RO_0000059

RO_0000091op # OPs

URI http://purl.obolibrary.org/obo/RO_0000091

RO_0001015op # OPs

URI http://purl.obolibrary.org/obo/RO_0001015

RO_0001025op # OPs

URI http://purl.obolibrary.org/obo/RO_0001025

immediately_preceded_byop # OPs

URI http://purl.obolibrary.org/obo/RO_0002087
Super-properties obo:BFO_0000062op

immediately_precedesop # OPs

URI http://purl.obolibrary.org/obo/RO_0002090
Super-properties obo:BFO_0000063op

ends duringop # OPs

URI http://purl.obolibrary.org/obo/RO_0002093
Description

X ends_during Y iff: ((start(Y) before_or_simultaneous_with end(X)) AND end(X) before_or_simultaneous_with end(Y).

Super-properties obo:RO_0002222op

spatially disjoint fromop # OPs

URI http://purl.obolibrary.org/obo/RO_0002163
Super-properties owl:topObjectProperty

negatively regulatesop # OPs

URI http://purl.obolibrary.org/obo/RO_0002212
Super-properties owl:topObjectProperty

has active participantop # OPs

URI http://purl.obolibrary.org/obo/RO_0002218
Super-properties obo:RO_0000057op

adjacent toop # OPs

URI http://purl.obolibrary.org/obo/RO_0002220
Super-properties obo:RO_0002163op

temporal relationop # OPs

URI http://purl.obolibrary.org/obo/RO_0002222
Description

A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations.

Super-properties owl:topObjectProperty
Domain(s) obo:BFO_0000003c
Range(s) obo:BFO_0000003c

starts withop # OPs

URI http://purl.obolibrary.org/obo/RO_0002224
Super-properties obo:RO_0002222op

endsop # OPs

URI http://purl.obolibrary.org/obo/RO_0002229
Source http://purl.obolibrary.org/obo/ro/release/2013-04-28/ro.owl
Super-properties obo:RO_0002222op

ends withop # OPs

URI http://purl.obolibrary.org/obo/RO_0002230
Source http://purl.obolibrary.org/obo/ro/release/2013-04-28/ro.owl
Super-properties obo:RO_0002222op

colocalizes withop # OPs

URI http://purl.obolibrary.org/obo/RO_0002325
Super-properties owl:topObjectProperty

RO_0002351op # OPs

URI http://purl.obolibrary.org/obo/RO_0002351

causally downstream ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002404
Super-properties obo:RO_0002501op

causally upstream ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002411
Super-properties obo:RO_0002501op

causal relation between processesop # OPs

URI http://purl.obolibrary.org/obo/RO_0002501
Super-properties owl:topObjectProperty

obsolete has_dispositionop # OPs

URI http://purl.org/obo/owl/OBO_REL#has_disposition
Super-properties oboInOwl:ObsoletePropertyop

negatively_regulatesop # OPs

URI http://purl.org/obo/owl/OBO_REL#negatively_regulates
Super-properties oboInOwl:ObsoletePropertyop

obsolete_realized_byop # OPs

URI http://purl.org/obo/owl/OBO_REL#realized_by
Description

NOTE: there appears to be some consistency in usage as to whether processes or continuants realize

Super-properties oboInOwl:ObsoletePropertyop

regulatesop # OPs

URI http://purl.org/obo/owl/OBO_REL#regulates
Super-properties oboInOwl:ObsoletePropertyop

ObsoletePropertyop # OPs

URI http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty

bearer_ofop # OPs

URI http://www.obofoundry.org/ro/ro.owl#bearer_of
Super-properties oboInOwl:ObsoletePropertyop

obsolete has proper partop # OPs

URI http://www.obofoundry.org/ro/ro.owl#has_proper_part
Super-properties oboInOwl:ObsoletePropertyop

inheres_inop # OPs

URI http://www.obofoundry.org/ro/ro.owl#inheres_in
Super-properties oboInOwl:ObsoletePropertyop

location_ofop # OPs

URI http://www.obofoundry.org/ro/ro.owl#location_of
Super-properties oboInOwl:ObsoletePropertyop

proper_part_ofop # OPs

URI http://www.obofoundry.org/ro/ro.owl#proper_part_of
Super-properties oboInOwl:ObsoletePropertyop

Functional Properties

has measurement valuefp # FPs

URI http://purl.obolibrary.org/obo/IAO_0000004

Datatype Properties

is expressed asdp # DPs

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000102
Domain(s) obo:BFO_0000031c

Annotation Properties

NLM IDap # APs

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000319
Description

This identifier is the one that the National Library of Medicine uses to identify journals uniquely in PubMed.

ISSN Linkingap # APs

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000320
Description

The linking ISSN is a single number assigned to all formats of a journal. The online and print versions of a journal, for example, are typically different. The linking ISSN refers to the journal regardless of format.

ISO Title Abbreviationap # APs

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000321
Description

ISO Abbreviations are constructed at NLM to assist NCBI in linking from GenBank to PubMed.

NLM Title Abbreviationap # APs

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000324
Description

The abbreviated journal title assigned by the National Library of Medicine. Typically, it's the ISO title abbreviation without periods.

URI creation dateap # APs

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000325
Description

This is the date that you created the URI that represents something, NOT the date that the thing referenced by the URI was created.

For example, if you create a URI on 2014-09-24 to represent a book published on 1982-10-17, then this annotation property should have the value 2014-09-24.

In other words, this annotation refers to the representation, not the represented thing.

For the 1982-10-17 date, we suggest the dc:created annotation.

author listap # APs

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000329
Description

an annotation property for capturing the list of authors on the publication or other document to which the entity to which the annotation is attached refers. That is, this annotation should be attached only to individuals that represent information content entities, and its values must denote the people that authored the ICE.

source code repository URLap # APs

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000488
Description

This annotation is intended for annotating instances of software application, software module, ontology (artifact), etc. with a uniform resource locator that points to the source code version control repository where they are managed. Note that for OWL individuals that reference a particular version of the software or ontology, this URL should point to the place in the repository where that version is located, rather than the general main page of the repository.

human readable synopsisap # APs

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000523
Super-properties rdfs:commentap

BFO OWL specification labelap # APs

URI http://purl.obolibrary.org/obo/BFO_0000179

BFO CLIF specification labelap # APs

URI http://purl.obolibrary.org/obo/BFO_0000180

hasURLap # APs

URI http://purl.obolibrary.org/obo/ERO_0000480
Description

There are several URL and hasURL annotation properties out there in the ontology world. This one had the most sensible source ontology and OBO ID URI combination out there.

editor preferred labelap # APs

URI http://purl.obolibrary.org/obo/IAO_0000111

example of usageap # APs

URI http://purl.obolibrary.org/obo/IAO_0000112

has curation statusap # APs

URI http://purl.obolibrary.org/obo/IAO_0000114

definitionap # APs

URI http://purl.obolibrary.org/obo/IAO_0000115

editor noteap # APs

URI http://purl.obolibrary.org/obo/IAO_0000116

definition editorap # APs

URI http://purl.obolibrary.org/obo/IAO_0000117

alternative termap # APs

URI http://purl.obolibrary.org/obo/IAO_0000118

definition sourceap # APs

URI http://purl.obolibrary.org/obo/IAO_0000119

has obsolescence reasonap # APs

URI http://purl.obolibrary.org/obo/IAO_0000231

curator noteap # APs

URI http://purl.obolibrary.org/obo/IAO_0000232

imported fromap # APs

URI http://purl.obolibrary.org/obo/IAO_0000412

OBO foundry unique labelap # APs

URI http://purl.obolibrary.org/obo/IAO_0000589

elucidationap # APs

URI http://purl.obolibrary.org/obo/IAO_0000600

has associated axiom(nl)ap # APs

URI http://purl.obolibrary.org/obo/IAO_0000601

has associated axiom(fol)ap # APs

URI http://purl.obolibrary.org/obo/IAO_0000602

ISA alternative termap # APs

URI http://purl.obolibrary.org/obo/OBI_0001847

NIAID GSCID-BRC alternative termap # APs

URI http://purl.obolibrary.org/obo/OBI_0001886

STATO alternative termap # APs

URI http://purl.obolibrary.org/obo/STATO_0000032
Super-properties obo:IAO_0000118ap

STATO_0000041ap # APs

URI http://purl.obolibrary.org/obo/STATO_0000041

STATO_0000391ap # APs

URI http://purl.obolibrary.org/obo/STATO_0000391

external_definitionap # APs

URI http://purl.obolibrary.org/obo/UBPROP_0000001

homology_notesap # APs

URI http://purl.obolibrary.org/obo/UBPROP_0000003

Unique Apollo Labelap # APs

URI http://purl.obolibrary.org/obo/apollo_sv.owl/APOLLO_SV_0000040

created_byap # APs

URI http://purl.obolibrary.org/obo/created_by

creation_dateap # APs

URI http://purl.obolibrary.org/obo/creation_date

defap # APs

URI http://purl.obolibrary.org/obo/def

namespaceap # APs

URI http://purl.obolibrary.org/obo/namespace

has_rankap # APs

URI http://purl.obolibrary.org/obo/ncbitaxon#has_rank
Description

This is an abstract class for use with the NCBI taxonomy to name the depth of the node within the tree. The link between the node term and the rank is only visible if you are using an obo 1.3 aware browser/editor; otherwise this can be ignored

creatorap # APs

URI http://purl.org/dc/elements/1.1/creator
Is Defined By http://purl.org/dc/elements/1.1/

licenseap # APs

URI http://purl.org/dc/elements/1.1/license
Is Defined By http://purl.org/dc/elements/1.1/

Sourceap # APs

URI http://purl.org/dc/elements/1.1/source
Is Defined By http://purl.org/dc/elements/1.1/

licenseap # APs

URI http://purl.org/dc/terms/license

bug-databaseap # APs

URI http://usefulinc.com/ns/doap#bug-database

created_byap # APs

URI http://www.geneontology.org/formats/oboInOwl#created_by

creation_dateap # APs

URI http://www.geneontology.org/formats/oboInOwl#creation_date

has_alternative_idap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasAlternativeId

has_broad_synonymap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym

database_cross_referenceap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasDbXref

hasDefinitionap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasDefinition

has_exact_synonymap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasExactSynonym

has_narrow_synonymap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym

has_obo_namespaceap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasOBONamespace

hasSynonymTypeap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasSynonymType

idap # APs

URI http://www.geneontology.org/formats/oboInOwl#id

in_subsetap # APs

URI http://www.geneontology.org/formats/oboInOwl#inSubset

shorthandap # APs

URI http://www.geneontology.org/formats/oboInOwl#shorthand

ontology IUIap # APs

URI http://www.referent-tracking.com/RTS_00000001

ontology version IUIap # APs

URI http://www.referent-tracking.com/RTS_00000002

commentap # APs

URI http://www.w3.org/2000/01/rdf-schema#comment

labelap # APs

URI http://www.w3.org/2000/01/rdf-schema#label

Named Individuals

organism population universalni

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000035

atmosphere of the Earthni

Class(es)
obo:APOLLO_SV_00000107
URI http://purl.obolibrary.org/obo/APOLLO_SV_00000113

weekni

Class(es)
obo:UO_0000003
URI http://purl.obolibrary.org/obo/UO_0000034
Description "A time unit which is equal to 7 days." [Wikipedia:Wikipedia]

Namespaces

default (:)
http://purl.obolibrary.org/obo/apollo_sv.owl
:
http://purl.obolibrary.org/obo/apollo_sv.owl#
dc
http://purl.org/dc/elements/1.1/
dcterms
dcterms:
doap
http://usefulinc.com/ns/doap#
efo
http://www.ebi.ac.uk/efo/
foaf
http://xmlns.com/foaf/0.1/
ncbitaxon
http://purl.obolibrary.org/obo/ncbitaxon#
obo
http://purl.obolibrary.org/obo/
oboInOwl
http://www.geneontology.org/formats/oboInOwl#
orcid
http://orcid.org/
owl
http://www.w3.org/2002/07/owl#
protege
http://protege.stanford.edu/plugins/owl/protege#
prov
http://www.w3.org/ns/prov#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
sdo
https://schema.org/
skos
http://www.w3.org/2004/02/skos/core#
terms
http://purl.org/dc/terms/
www
http://www.referent-tracking.com/
xsd
http://www.w3.org/2001/XMLSchema#

Legend

cClasses
opObject Properties
fpFunctional Properties
dpData Properties
dpAnnotation Properties
pProperties
niNamed Individuals