Apollo Structured Vocabulary (Apollo-SV)

IRI:
http://purl.obolibrary.org/obo/apollo_sv.owl
Version IRI:
http://purl.obolibrary.org/obo/apollo_sv/v4.1.1./apollo_sv.owl
Current version:
v4.1.1
Authors:
Mathias Brochhausen
Contributors:
Amanda Hicks
John Levander
Josh Hanna
Matt Diller
Mike Wagner
Shawn T. Brown
William R. Hogan
Imported Ontologies:
http://purl.obolibrary.org/obo/bfo/2014-05-03/classes-only.owl (visualise it with LODE)
http://purl.obolibrary.org/obo/geo/dev/geo.owl (visualise it with LODE)
http://purl.obolibrary.org/obo/iao/pno/dev/pno.owl (visualise it with LODE)
http://purl.obolibrary.org/obo/ro/core.owl (visualise it with LODE)
Other visualisation:
Ontology source

Abstract

When citing Apollo-SV, use the permanent URL of the ontology: http://purl.obolibrary.org/obo/apollo_sv.owl. When referencing a specific component of the Apollo-SV such as a class, object property, annotation property, or individual, use the component's Uniform Resource Identifier (URI).

Table of Content

  1. Classes
  2. Object Properties
  3. Data Properties
  4. Named Individuals
  5. Annotation Properties
  6. Namespace Declarations

Classes

Middle East respiratory syndrome coronavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1335626

has super-classes
Betacoronavirusc

1-D extentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001708

has super-classes
p a t o 0000117c
has sub-classes
p a t o 0000122c

95% confidence intervalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000092

has super-classes
TODOc

[Haemophilus] ducreyic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_730

has super-classes
Haemophilusc

A software application that has as part an objective specification that is achieved by only a metagenomics analysis.c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000592

has super-classes
i a o 0000594c

abiotic ecosystemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000100

Authors:
William R. Hogan
has super-classes
b f o 0000040c

abiotic ecosystem censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000309

is equivalent to
data setc and (b f o 0000051op some countc and (is aboutop some b f o 0000001c and (b f o 0000050op some abiotic ecosystemc) and (exists atop some b f o 0000038c) and (r o 0001025op some g e o 000000372c)))
has super-classes
censusc
has sub-classes
oviposition site censusc

abiotic ecosystem data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000593

is equivalent to
data setc and (is aboutop some abiotic ecosystemc or abiotic ecosystem elementc)
has super-classes
data setc
has sub-classes
atmospheric data setc

abiotic ecosystem elementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000220

Class was originally created to correspond with an element from Apollo XSD v3.1.0.
is equivalent to
(b f o 0000040c and (not (organismc))) and (b f o 0000050op some abiotic ecosystemc)
has super-classes
b f o 0000040c
has sub-classes
contaminated abiotic thingc

Acaric back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6933

has super-classes
Arachnidac
has sub-classes
Acariformesc

Acariformesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6946

has super-classes
Acaric
has sub-classes
Sarcoptiformesc

Acinetobacterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_469

has super-classes
Moraxellaceaec
has sub-classes
Acinetobacter calcoaceticus/baumannii complexc

Acinetobacter baumanniic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_470

has super-classes
Acinetobacter calcoaceticus/baumannii complexc

Acinetobacter calcoaceticus/baumannii complexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_909768

has super-classes
Acinetobacterc
has sub-classes
Acinetobacter baumanniic

Aconoidasidac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_422676

has super-classes
Apicomplexac
has sub-classes
Haemosporidac

Actinobacteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1760

has super-classes
Actinobacteriac
has sub-classes
Corynebacterialesc

Actinobacteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_201174

has super-classes
Terrabacteria groupc
has sub-classes
Actinobacteriac

action specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000007

has super-classes
directive information entityc
has sub-classes
betac, cut-off point specificationc, epidemic simulator action specificationc, infectious disease control strategy action specificationc, infectious disease forecast time specificationc, prioritization scheme for control measurec

acute respiratory illnessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000574

has super-classes
clinical phenotypec

adult vector control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000414

has super-classes
vector control strategyc
has sub-classes
Wolbachia prerelease adult vector control strategyc, insecticide-treated net control measurec, odor-baited trap control strategyc

Aedesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7158

has super-classes
Aedinic
has sub-classes
Stegomyiac

Aedes aegyptic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7159

has super-classes
Stegomyiac

Aedes albopictusc back to ToC or Class ToC

IRI: http://purl.obolibrary.obo/obo/NCBITaxon_7160

has super-classes
Stegomyiac

Aedinic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1056966

has super-classes
Culicinaec
has sub-classes
Aedesc

affinity for buildingsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000451

has super-classes
probabilityc

age data in age brackets data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000085

has super-classes
data setc
data setc and (b f o 0000051op some measurement datumc and (is aboutop some b f o 0000038c and (has temporal occupantop exactly 1 historyc)))

age in years datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000504

has super-classes
time measurement datumc

age range categoryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000241

has super-classes
o b i 0001931c

age-dependent fecundity reductionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000472

has super-classes
rate measurement datumc

agent level population and environment censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000197

An instance of the an AgentLevel PopulationAndEnvironmentCensus type comprises an AgentLevel PopulationAndEnvironmentCensus Description, which describes the biotic and abiotic ecosystems elements that are counted by the census, and a URL where the census (the counts) can be retrieved.
has super-classes
population and environment censusc

agent model ecosystem census descriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000198

At present, this class corresponds with an XSD type that contains authentication plus information needed to generate a Synthia synthetic population dataset including (1) geographical location and (2) a list of household characteristics.
has super-classes
information content entityc

agent-based disease transmission modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000294

has super-classes
disease transmission modelc

agent-level ecosystem censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000165

is equivalent to
censusc and (o b i 0000312op some agent-level ecosystem data generationc and (o b i 0000293op some population censusc))
has super-classes
censusc

agent-level ecosystem data generationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000164

has super-classes
dataset creatingc

aggregate of dependenciesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000036

has super-classes
aggregate of geopolitical organizationsc

aggregate of disease coursesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000578

has super-classes
b f o 0000015c

aggregate of geopolitical organizationsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000035

Examples: all sovereign states whose territory is part of North America, all British Crown Dependencies, all midwestern US States, all US dependencies, etc.
has super-classes
aggregate of organizationsc
has sub-classes
aggregate of dependenciesc, aggregate of major administrative subdivisionsc, aggregate of sovereign statesc

aggregate of major administrative subdivisionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000037

has super-classes
aggregate of geopolitical organizationsc

aggregate of organizationsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000033

It is often convenient to group organizations together that otherwise might not even interact with one another.
is equivalent to
object_aggregatec and (r o 0002351op some organizationc) and (r o 0002351op only organizationc)
has super-classes
object_aggregatec
has sub-classes
aggregate of geopolitical organizationsc

aggregate of sovereign statesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000034

has super-classes
aggregate of geopolitical organizationsc

agingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0007568

has super-classes
developmental processc
has sub-classes
multicellular organismal agingc

agonismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000340

is equivalent to
ectosymbiosisc and (has_participantop some organismc and (r o 0000056op some bodily harmc)) and (has_participantop some organismc and (r o 0000056op some bodily benefitc))
has super-classes
ectosymbiosisc
has sub-classes
intimate agonismc, transient agonismc

air temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000753

has super-classes
temperature of airc

Alcaligenaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_506

has super-classes
Burkholderialesc
has sub-classes
Bordetellac

algorithmc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000064

has super-classes
plan specificationc
has sub-classes
disease transmission modelc, scale-free network modelc

Alphacoronavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_693996

has super-classes
Coronavirinaec
has sub-classes
Porcine epidemic diarrhea virusc

Alphaherpesvirinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10293

has super-classes
Herpesviridaec
has sub-classes
Simplexvirusc, Varicellovirusc

Alphaproteobacteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_28211

has super-classes
Proteobacteriac
has sub-classes
Rhizobialesc, Rickettsialesc

Alphavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11019

has super-classes
Togaviridaec
has sub-classes
Barmah Forest virusc, EEEV complexc, Ross River virusc, SFV complexc, WEEV complexc

Alveolatac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33630

has super-classes
Eukaryotac
has sub-classes
Apicomplexac

amensalismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000339

Example: Spanish ibex and weevils of the genus Timarcha
is equivalent to
ectosymbiosisc and (not (realizesop some homeostasisc and (r o 0000052op some organismc))) and (has_participantop some organismc and (r o 0000056op some bodily harmc))
has super-classes
ectosymbiosisc

Amniotac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32524

has super-classes
Tetrapodac
has sub-classes
Mammaliac, Sauropsidac

Amoebozoac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_554915

has super-classes
Eukaryotac
has sub-classes
Archamoebaec

Anaplasmac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_768

has super-classes
Anaplasmataceaec
has sub-classes
phagocytophilum groupc

Anaplasma phagocytophilumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_948

has super-classes
phagocytophilum groupc

Anaplasmataceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_942

has super-classes
Rickettsialesc
has sub-classes
Anaplasmac, Ehrlichiac

Anatidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_8830

has super-classes
Anseriformesc

anatomical groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000480

has super-classes
anatomical structurec
has sub-classes
anatomical systemc

anatomical structurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000061

has super-classes
material anatomical entityc
has sub-classes
anatomical groupc, multicellular anatomical structurec

anatomical systemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000467

has super-classes
anatomical groupc
has sub-classes
immune systemc

Ancylostomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_29169

has super-classes
Ancylostomatinaec
has sub-classes
Ancylostoma caninumc, Ancylostoma duodenalec

Ancylostoma caninumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_29170

has super-classes
Ancylostomac

Ancylostoma duodenalec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_51022

has super-classes
Ancylostomac

Ancylostomatidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33278

has super-classes
Ancylostomatoideac
has sub-classes
Ancylostomatinaec

Ancylostomatinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_53469

has super-classes
Ancylostomatidaec
has sub-classes
Ancylostomac

Ancylostomatoideac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33277

has super-classes
Strongylidac
has sub-classes
Ancylostomatidaec

Anopheles <genus>c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7164

has super-classes
Anophelinaec
has sub-classes
Anopheles <subgenus>c

Anopheles <subgenus>c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_44482

has super-classes
Anopheles <genus>c

Anophelinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_43816

has super-classes
Culicidaec
has sub-classes
Anopheles <genus>c

Anseriformesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_8826

has super-classes
Galloanseraec
has sub-classes
Anatidaec

antagonismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000338

Example: competition between lions and hyenas for food
is equivalent to
symbiosisc and ((has occurrent partop some bodily harmc) and (has_participantop min 2 organismc))
has super-classes
ectosymbiosisc

anti-bacterial control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000305

has super-classes
anti-infective individual treatment control strategyc

anti-infective individual treatment control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000304

has super-classes
individual treatment control strategyc
has sub-classes
anti-bacterial control strategyc, antiviral control strategyc

antiviral administration schedulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000052

has super-classes
individual treatment control strategy action specificationc

antiviral compliancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000050

MB: This class is still awaiting its class restriction. It should be restricted as being about a population that has members that are eligible for an antiviral treatment against the members that are eligible and consented the antiviral treatment. There is a class "eligibility rule" in OBI (http://purl.obolibrary.org/obo/OBI_0500026), but it is restricted by definition to studies. I put in an issue in the OBI issue tracker. The consenting process and its specified outcome should be done in d-acts, but needs to be done properly.
has super-classes
calculated datumc

antiviral control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000181

has super-classes
anti-infective individual treatment control strategyc

antiviral coursec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000138

has super-classes
individual treatment control strategy action specificationc

antiviral drugc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_36044

The usage or intended usage of a drug product to act against a viral infection of a host.
has super-classes
b f o 0000023c

antiviral efficacy delayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000049

has super-classes
durationc

antiviral identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000122

has super-classes
i a o 0020000c
i a o 0000219op some b f o 0000040c

antiviral supply schedulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000051

has super-classes
individual treatment control strategy action specificationc

antiviral treatmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000171

is equivalent to
drug treatmentc and (o b i 0000293op some antiviral drugc)
has super-classes
drug treatmentc

antiviral treatment efficacyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000048

MB: For DL reasons the easiest way to formalize the definition was to assume only organism that are either host or not immune undergo antiviral treatment. Is that adequate? I assume this'll create problems…
has super-classes
infectious disease treatment efficacyc

Aphthovirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12109

has super-classes
Picornaviridaec
has sub-classes
Foot-and-mouth disease virusc

Apicomplexac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5794

has super-classes
Alveolatac
has sub-classes
Aconoidasidac, Conoidasidac

apollo location codec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000259

Authors:
William R. Hogan
has super-classes
i a o 0020000c

Apollo pathogen codec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000219

has super-classes
i a o 0020000c

apollo simulator configurationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000210

has super-classes
simulator configurationc

Arachnidac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6854

has super-classes
Cheliceratac
has sub-classes
Acaric

Archamoebaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_555406

has super-classes
Amoebozoac
has sub-classes
Entamoebidaec

Archelosauriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1329799

has super-classes
Sauriac
has sub-classes
Archosauriac

architectural structurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000061

"Building" is a subclass of this.
has super-classes
b f o 0000040c
has sub-classes
facilityc

Archosauriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_8492

has super-classes
Archelosauriac
has sub-classes
Dinosauriac

Arenaviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11617

has super-classes
ssRNA negative-strand virusc
has sub-classes
Mammarenavirusc

Arthropodac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6656

has super-classes
Panarthropodac
has sub-classes
Cheliceratac, Mandibulatac

ascertainment delayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000134

per Mike Wagner, this is input
has super-classes
directive information entityc

ascertainment fractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000135

fraction of organisms (usually infected) that a surveillance system detects out of the total population
has super-classes
data itemc

Ascomycotac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_4890

has super-classes
Dikaryac
has sub-classes
saccharomycetac

Astigmatac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6951

has super-classes
Sarcoptiformesc
has sub-classes
Psoroptidiac

asymptomatic hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000236

has super-classes
hostc

atmospherec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000107

Authors:
William R. Hogan
atmosphere of Earth, Earth's moon, Saturn, Titan, etc.
has super-classes
b f o 0000024c
has members
atmosphere of the Earthni

atmosphere of geographical regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000110

is equivalent to
g e o 000000371c and (b f o 0000050op value atmosphere of the Earth)
has super-classes
g e o 000000371c

atmospheric data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000594

is equivalent to
abiotic ecosystem data setc and (is aboutop some b f o 0000050op value atmosphere of the Earth)
has super-classes
abiotic ecosystem data setc

atmospheric water vapourc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000268

has super-classes
water vapourc

average valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000679

is equivalent to
data itemc and (o b i 0000312op some averaging data transformationc)
has super-classes
data itemc
has sub-classes
Breteau Indexc, eggs per broodc, mean air temperaturec, mean rate of hydrological precipitationc, obsolete carrying capacity per housec, reproduction numberc, weighted arithmetic meanc

averaging data transformationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200170

is equivalent to
(o b i 0000299op some average valuec) or (achieves_planned_objectiveop some averaging objectivec)
has super-classes
data transformationc

averaging objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000425

has super-classes
data transformation objectivec

Avesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_8782

has super-classes
Coelurosauriac
has sub-classes
Neognathaec

b f o 0000038c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000038

has sub-classes
closure periodc, epidemic intervalc

Bacillaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186817

has super-classes
Bacillalesc
has sub-classes
Bacillusc

Bacillalesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1385

has super-classes
Bacillic
has sub-classes
Bacillaceaec, Listeriaceaec, Staphylococcaceaec

Bacillic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_91061

has super-classes
Firmicutesc
has sub-classes
Bacillalesc, Lactobacillalesc

Bacillusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1386

has super-classes
Bacillaceaec
has sub-classes
Bacillus cereus groupc

Bacillus anthracisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1392

has super-classes
Bacillus cereus groupc

Bacillus cereus groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_86661

has super-classes
Bacillusc
has sub-classes
Bacillus anthracisc

Bacteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2

has super-classes
organismc
has sub-classes
PVC groupc, Proteobacteriac, Spirochaetesc, Terrabacteria groupc

Barmah Forest virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11020

has super-classes
Alphavirusc

basic reproduction numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000002

MB: Here we run into the well know DL problem that we cannot specify that the infectious agent that is transmitted is of the same type that the infectious agent the population is susceptible to.
has super-classes
reproduction numberc
reproduction numberc and (is aboutop some infection acquisitionc and (has_participantop some organismc and (b f o 0000137op some susceptible populationc)))

Bayesian credible intervalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000093

has super-classes
TODOc

Bayesian networkc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000082

has super-classes
joint probability distributionc

becoming asymptomaticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000223

has super-classes
disease outcomec

becoming severely symptomaticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000225

has super-classes
disease outcomec

becoming symptomaticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000224

has super-classes
disease outcomec

behaviorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0007610

Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
has super-classes
biological processc
has sub-classes
geographical migration of organismc, individual human behaviorc, individual mosquito behaviorc, multi-organism behaviorc, reproductive behaviorc

betac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000146

it is the same thing as transmission coefficient
has super-classes
action specificationc

beta distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000078

has super-classes
continuous parametric probability distributionc

Betacoronavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_694002

has super-classes
Coronavirinaec
has sub-classes
Middle East respiratory syndrome coronavirusc, SARS coronavirusc

Betaproteobacteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_28216

has super-classes
Proteobacteriac
has sub-classes
Burkholderialesc, Neisserialesc

Bilateriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33213

has super-classes
Eumetazoac
has sub-classes
Deuterostomiac, Platyhelminthesc, Protostomiac

biological processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0008150

has super-classes
b f o 0000015c
has sub-classes
behaviorc, biological regulationc, contaminationc, developmental processc, entry into hostc, establishment of localizationc, gonotrophic cyclec, multi-organism processc, organism emergence from protective structurec, potentially infectious contactingc, reproductionc, reproductive processc, response to stimulusc

biological regulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0065007

has super-classes
biological processc
has sub-classes
regulation of biological processc, regulation of biological qualityc

biological sexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000047

has super-classes
b f o 0000019c
has sub-classes
femalec, malec

biotic ecosystemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000104

Authors:
William R. Hogan
has super-classes
b f o 0000040c

bodily benefitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000372

has super-classes
b f o 0000015c

bodily harmc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000371

has super-classes
b f o 0000015c

border control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000228

has super-classes
travel-related infectious disease control strategyc

Bordetellac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_517

has super-classes
Alcaligenaceaec
has sub-classes
Bordetella pertussisc

Bordetella pertussisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_520

has super-classes
Bordetellac

Boreoeutheriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1437010

has super-classes
Eutheriac
has sub-classes
Euarchontogliresc, Laurasiatheriac

Borreliac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_138

has super-classes
Borreliaceaec

Borreliaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1643685

has super-classes
Spirochaetalesc
has sub-classes
Borreliac

Bosc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9903

has super-classes
Bovinaec
has sub-classes
Bos taurusc

Bos taurusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9913

has super-classes
Bosc

Bovidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9895

has super-classes
Pecorac
has sub-classes
Bovinaec, Caprinaec

Bovinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_27592

has super-classes
Bovidaec
has sub-classes
Bosc

Breteau Indexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000311

has super-classes
average valuec

Brucellac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_234

has super-classes
Brucellaceaec
has sub-classes
Brucella abortusc, Brucella canisc, Brucella melitensisc, Brucella suisc

Brucella abortusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_235

has super-classes
Brucellac

Brucella canisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_36855

has super-classes
Brucellac

Brucella melitensisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_29459

has super-classes
Brucellac

Brucella suisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_29461

has super-classes
Brucellac

Brucellaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_118882

has super-classes
Rhizobialesc
has sub-classes
Brucellac

Bundibugyo ebolavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_565995

has super-classes
Ebolavirusc

Bunyaviralesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1980410

has super-classes
ssRNA negative-strand virusc
has sub-classes
Nairoviridaec, Peribunyaviridaec

Bunyaviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11571

has super-classes
ssRNA negative-strand virusc
has sub-classes
Hantavirusc, Phlebovirusc

Burkholderiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32008

has super-classes
Burkholderiaceaec
has sub-classes
pseudomallei groupc

Burkholderia pseudomalleic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_28450

has super-classes
pseudomallei groupc

Burkholderiaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_119060

has super-classes
Burkholderialesc
has sub-classes
Burkholderiac

Burkholderialesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_80840

has super-classes
Betaproteobacteriac
has sub-classes
Alcaligenaceaec, Burkholderiaceaec

calculated datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302867

APOLLO DEVELOPERS: We need to check whether OBI changes the label and the hierarchical place of this class.
has super-classes
measurement datumc
has sub-classes
antiviral compliancec, disease outcome with probabilityc, epidemic peak intensityc, ovisite carrying capacityc, statistical confidencec, vaccination compliancec

Caliciviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11974

has super-classes
ssRNA positive-strand viruses, no DNA stagec
has sub-classes
Norovirusc

California encephalitis orthobunyavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1933264

has super-classes
Orthobunyavirusc
has sub-classes
California encephalitis virusc, Inkoo virusc, Jamestown Canyon virusc, La Crosse virusc, Snowshoe hare virusc, Tahyna virusc

California encephalitis virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_35305

has super-classes
California encephalitis orthobunyavirusc

Campylobacterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_194

has super-classes
Campylobacteraceaec

Campylobacteraceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_72294

has super-classes
Campylobacteralesc
has sub-classes
Campylobacterc

Campylobacteralesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_213849

has super-classes
Epsilonproteobacteriac
has sub-classes
Campylobacteraceaec, Helicobacteraceaec

Candida aurisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_498019

has super-classes
Clavispora/Candida cladec

Canidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9608

has super-classes
Caniformiac
has sub-classes
Canisc

Caniformiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_379584

has super-classes
Carnivorac
has sub-classes
Canidaec

Canisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9611

has super-classes
Canidaec
has sub-classes
Canis lupusc

canis groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_106178

has super-classes
Ehrlichiac
has sub-classes
Ehrlichia chaffeensisc

Canis lupusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9612

has super-classes
Canisc
has sub-classes
Canis lupus familiarisc

Canis lupus familiarisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9615

has super-classes
Canis lupusc

Caprac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9922

has super-classes
Caprinaec
has sub-classes
Capra hircusc

Capra hircusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9925

has super-classes
Caprac

Caprinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9963

has super-classes
Bovidaec
has sub-classes
Caprac, Ovisc

Carnivorac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33554

has super-classes
Laurasiatheriac
has sub-classes
Caniformiac

carrying capacity per housec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000473

Mosquitos can sense eggs in ovisite so tend to lay in places not at max.
has super-classes
epidemic simulator action specificationc

case definitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000296

has super-classes
information content entityc

case isolation control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000230

has super-classes
infectious disease control strategyc
has sub-classes
contact isolation control measurec

case seriesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000558

has super-classes
o b i 0000066

case series data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000559

has super-classes
data setc
o b i 0000312op some case seriesc

Catarrhinic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9526

has super-classes
Simiiformesc
has sub-classes
Cercopithecoideac

categorical variablec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000252

has super-classes
variablec

censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000173

has super-classes
data setc
data setc and (b f o 0000051op some countc and (is aboutop some b f o 0000001c and (exists atop some b f o 0000038c) and (r o 0001025op some g e o 000000372c)))
has sub-classes
abiotic ecosystem censusc, agent-level ecosystem censusc, compartment model population and environment censusc, contaminated thing censusc, control strategy inventory censusc, population and environment censusc, population censusc, population demographic censusc, population infection and immunity censusc, population treatment censusc, school facility censusc, treatment facility censusc

census objective specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000387

has super-classes
objective specificationc

census plan specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000388

has super-classes
plan specificationc

census reference datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000240

has super-classes
information content entityc

census takingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000389

has super-classes
planned processc

center valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000674

has super-classes
data itemc

Cercopithecidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9527

has super-classes
Cercopithecoideac
has sub-classes
Cercopithecinaec

Cercopithecinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9528

has super-classes
Cercopithecidaec
has sub-classes
Macacac

Cercopithecoideac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_314294

has super-classes
Catarrhinic
has sub-classes
Cercopithecidaec

Cetartiodactylac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_91561

has super-classes
Laurasiatheriac
has sub-classes
Ruminantiac, Suinac

Cheliceratac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6843

has super-classes
Arthropodac
has sub-classes
Arachnidac

chemical resistance to infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000335

As with all dispositions, chemical resistance need not be realized to exist. The presence of cholorquine confers this disposition even if the person is never bitten by a mosquito, let alone a malaria-laden mosquito.
has super-classes
resistance to infectionc
resistance to infectionc and (has material basis at all timesop some scattered molecular aggregatec)

Chikungunya virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_37124

has super-classes
SFV complexc

Chlamydiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_810

has super-classes
Chlamydia/Chlamydophila groupc
has sub-classes
Chlamydia psittacic, Chlamydia trachomatisc

Chlamydia psittacic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_83554

has super-classes
Chlamydiac

Chlamydia trachomatisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_813

has super-classes
Chlamydiac

Chlamydia/Chlamydophila groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1113537

has super-classes
Chlamydiaceaec
has sub-classes
Chlamydiac

Chlamydiaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_809

has super-classes
Chlamydialesc
has sub-classes
Chlamydia/Chlamydophila groupc

Chlamydiaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_204428

has super-classes
PVC groupc
has sub-classes
Chlamydiiac

Chlamydialesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_51291

has super-classes
Chlamydiiac
has sub-classes
Chlamydiaceaec

Chlamydiiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_204429

has super-classes
Chlamydiaec
has sub-classes
Chlamydialesc

Chordatac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7711

has super-classes
Deuterostomiac
has sub-classes
Craniatac

Chordopoxvirinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10241

has super-classes
Poxviridaec
has sub-classes
Orthopoxvirusc

Chromadoreac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_119089

has super-classes
Nematodac
has sub-classes
Rhabditidac

citation identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000519

has super-classes
i a o 0020000c

clade namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000232

Some regard a clade to be a single branch on the tree of life. [http://en.wikipedia.org/wiki/Clade]
has super-classes
taxonomy identifierc

Clavisporac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_36910

has super-classes
Metschnikowiaceaec
has sub-classes
Clavispora/Candida cladec

Clavispora/Candida cladec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1540022

has super-classes
Clavisporac
has sub-classes
Candida aurisc

clear infection upon vector migrationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000468

Class was originally created to correspond with an element from Apollo XSD v3.1.0.
has super-classes
epidemic simulator action specificationc

clear Wolbachia upon vector migrationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000427

has super-classes
epidemic simulator action specificationc

climate data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000591

is equivalent to
data setc and ((is aboutop some environmental system processc) or (is aboutop some b f o 0000002 and (r o 0000056op some environmental system processc)))
has super-classes
data setc

clinical findingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000014

has super-classes
data itemc
has sub-classes
laboratory findingc

clinical phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000027

has super-classes
phenotypec
has sub-classes
acute respiratory illnessc

close individual places independently strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000286

has super-classes
place closure control strategyc

Clostridiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186801

has super-classes
Firmicutesc
has sub-classes
Clostridialesc

Clostridiaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_31979

has super-classes
Clostridialesc
has sub-classes
Clostridiumc

Clostridialesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186802

has super-classes
Clostridiac
has sub-classes
Clostridiaceaec, Peptostreptococcaceaec

Clostridioidesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1870884

has super-classes
Peptostreptococcaceaec
has sub-classes
Clostridioides difficilec

Clostridioides difficilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1496

has super-classes
Clostridioidesc

Clostridiumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1485

has super-classes
Clostridiaceaec
has sub-classes
Clostridium botulinumc, Clostridium tetanic

Clostridium botulinumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1491

has super-classes
Clostridiumc

Clostridium tetanic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1513

has super-classes
Clostridiumc

closure periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000435

has super-classes
b f o 0000038c

Coccidiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5796

has super-classes
Conoidasidac
has sub-classes
Eucoccidioridac

Coccidioidesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5500

has super-classes
Onygenales incertae sedisc
has sub-classes
Coccidioides immitisc, Coccidioides posadasiic

Coccidioides immitisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5501

has super-classes
Coccidioidesc

Coccidioides posadasiic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_199306

has super-classes
Coccidioidesc

Coelurosauriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_436492

has super-classes
Theropodac
has sub-classes
Avesc

collection of humansc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000023

An object aggregate all of whose components are human beings.
is equivalent to
collection of organismsc and (r o 0002351op some n c b i taxon 9606c) and (r o 0002351op only n c b i taxon 9606c)
has super-classes
collection of organisms of the same speciesc
has sub-classes
hospital patient populationc, school student populationc

collection of organismsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000022

Any arbitrary collection of organisms. They need not be of the same taxonomic class.
is equivalent to
PCO:collection of organismsc
object_aggregatec and (r o 0002351op some organismc) and (r o 0002351op only organismc)
has super-classes
object_aggregatec

collection of organisms of the same speciesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000018

has super-classes
PCO:collection of organismsc
has sub-classes
collection of humansc, populationc

colonizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000330

Primary use case is colonization of humans, animals with Staph aureus, but it also covers bacteriuria, transient bactermia, and normal gut flora.
is equivalent to
reproductionc and (occurs inop some (not (tissuec)) and (b f o 0000050op some organismc))
has super-classes
reproductionc

colonization acquisitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000332

the host organism was not colonized wtih the pathogen prior to the colonization acquisition
has super-classes
entry into hostc

colonization durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000490

has super-classes
durationc

communityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000094

Authors:
William R. Hogan
has super-classes
object_aggregatec
object_aggregatec and (r o 0002351op some populationc) and (r o 0002351op only populationc)

community transmission multiplierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000288

has super-classes
epidemic simulator action specificationc

compartment model population and environment censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000199

The Apollo XSD allows us to specify counts of certain subpopulations and abiotic ecosystem elements for a compartmental model (vs. specifying each individual in the population as in agent model population and environment census).
has super-classes
censusc

compartmental disease transmission modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000303

has super-classes
disease transmission modelc
has sub-classes
Susceptible-Exposed-Infectious-Recovered modelc, Susceptible-Infected-Resistant modelc, Susceptible-Infected-Susceptible modelc

compiled software codec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000525

has super-classes
softwarec

compiling softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000524

It's compiling "software" (scare quotes) and not "source code" because you can compile Java bytecode to machine code, and Java bytecode is not technically "source code". Compiling source code would be a subclass of this class (as would compiling Java bytecode, etc.).
has super-classes
planned processc

complete simulator identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000054

MB: I am not 100% happy with the elucidation. Can't we just say that this is the full identifier identifying the simulator with both its name and its version number?
is equivalent to
i a o 0020000c and (i a o 0000219op some epidemic modelc)
has super-classes
i a o 0020000c

complete software identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000106

is equivalent to
i a o 0020000c and (i a o 0000219op exactly 1 i a o 0000594c)
has super-classes
i a o 0020000c

complete software license identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000536

has super-classes
i a o 0020000c

computational modeling toolkitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000565

has super-classes
i a o 0000594c

computerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0400107

has super-classes
devicec
has sub-classes
computer clusterc

computer clusterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001092

has super-classes
computerc

conditional probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000529

has super-classes
probabilityc
has sub-classes
probability of infection over timec

conditional probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000245

has super-classes
probability distributionc

confidence intervalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000422

has super-classes
data itemc

Conoidasidac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1280412

has super-classes
Apicomplexac
has sub-classes
Coccidiac

contact definitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000408

has super-classes
information content entityc

contact isolation control measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000489

has super-classes
case isolation control strategyc

contact tracingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000550

has super-classes
infectious disease control strategyc

contacted organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000407

is equivalent to
organismc and (is bearer ofop some potentially infectious contact rolec)
has super-classes
organismc

contagious organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000190

is equivalent to
hostc and (is bearer ofop some contagiousnessc)
has super-classes
hostc

contagious populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000156

has super-classes
host populationc

contagiousnessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000182

has super-classes
b f o 0000016c

container reduction vector control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000392

has super-classes
vector control strategyc

contaminated abiotic thingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000571

has super-classes
abiotic ecosystem elementc

contaminated thingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000166

A contaminated thing is an entity that contains a pathogen (either internal to itself or on its surface) that is not undergoing an infection.
is equivalent to
b f o 0000004c and (r o 0001015op some pathogenc and (not (r o 0000056op some infectionc)))
has super-classes
b f o 0000004c

contaminated thing censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000201

has super-classes
censusc

contaminationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000186

the preferred term is biological contamination to distinguish from things like radiological contamination, contamination of the Gulf of Mexico with oil, the contamination of air with pollution, etc.
is equivalent to
(reproductionc and (has_participantop some pathogenc) and (has_participantop some b f o 0000040c and (not (organismc)))) or (biological processc and (has_participantop some pathogenc) and (has_participantop some b f o 0000040c))
has super-classes
biological processc

contamination acquisitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000167

is equivalent to
biological processc and (o b i 0000293op some pathogenc) and (o b i 0000293op some (not (contaminated thingc)) or (not (pathogenc))) and (o b i 0000299op some contaminated thingc)
has super-classes
entry into hostc

contamination period durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000505

has super-classes
durationc

contamination probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000262

Authors:
William R. Hogan
has super-classes
probabilityc

continuous nonparametric probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000253

has super-classes
nonparametric probability distributionc

continuous parametric probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000251

has super-classes
parametric probability distributionc
has sub-classes
Weibull Distributionc, beta distributionc, continuous uniform distributionc, gamma distributionc, log normal distributionc, normal distributionc, triangular distributionc, uniform distributionc

continuous uniform distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000257

has super-classes
continuous parametric probability distributionc

contraindicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OAE_0000055

has super-classes
b f o 0000016c
has sub-classes
treatment contraindicationc, vaccine contraindicationc

control strategy censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000604

Date:
16T16:43:04Z/03/2021
Authors:
http://orcid.org/0000-0002-9881-1017
is equivalent to
censusc and (is aboutop some infectious disease control strategyc)
has super-classes
data setc
has sub-classes
school closure control strategy censusc, vaccination control strategy censusc

control strategy compliancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000139

the class restriction can be made more precise AH
has super-classes
measurement datumc and (is aboutop some populationc and (r o 0000056op some infectious disease control strategy executionc))

control strategy dose schedulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000084

has super-classes
individual treatment control strategy action specificationc
b f o 0000050op some infectious disease control strategyc
has sub-classes
vaccination dose schedulec

control strategy inventory censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000189

has super-classes
censusc

control strategy reactive endpoint fractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000103

has super-classes
i a o 0000055c
b f o 0000050op some infectious disease control strategyc
has sub-classes
vaccination reactive end point fractionc

control strategy reactive start time informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000011

has super-classes
control strategy start time informationc

control strategy response delayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000133

has super-classes
measurement datumc

control strategy stand-down delayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000263

Authors:
William R. Hogan
has super-classes
measurement datumc

control strategy start time informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000208

has super-classes
information content entityc
has sub-classes
control strategy reactive start time informationc

control strategy stop time informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000260

Authors:
William R. Hogan
has super-classes
information content entityc

control strategy target facilitiesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000126

has super-classes
facilityc

control strategy target population fractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000128

a specification of a population that a control strategy applies to. It is intended to apply to a real population, so I don’t know whether you would consider it a simulated thing. I don’t.
has super-classes
infectious disease control objective specificationc

control strategy target populations and prioritizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000127

has super-classes
TODOc

copyright licensec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000798

Can be for any creative work including fiction. But the license itself is an ICE, and refers to real claims and obligations.
has super-classes
i a o 0000310c
has sub-classes
software licensec

Coronaviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11118

has super-classes
Nidoviralesc
has sub-classes
Coronavirinaec

Coronavirinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_693995

has super-classes
Coronaviridaec
has sub-classes
Alphacoronavirusc, Betacoronavirusc

Corynebacteriaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1653

has super-classes
Corynebacterialesc
has sub-classes
Corynebacteriumc

Corynebacterialesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_85007

has super-classes
Actinobacteriac
has sub-classes
Corynebacteriaceaec, Mycobacteriaceaec

Corynebacteriumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1716

has super-classes
Corynebacteriaceaec
has sub-classes
Corynebacterium diphtheriaec

Corynebacterium diphtheriaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1717

has super-classes
Corynebacteriumc

Coturnixc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9090

has super-classes
Perdicinaec
has sub-classes
Coturnix japonicac

Coturnix japonicac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_93934

has super-classes
Coturnixc

countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000032

is equivalent to
data itemc and (o b i 0000312op some countingc)
has super-classes
measurement datumc
has sub-classes
count of contacted populationc, count of contagious populationc, count of disease casesc, count of resistant populationc, count of simulated contagious populationc, count of simulated exposed populationc, count of simulated populationc, count of simulated resistant populationc, count of simulated susceptible populationc, count of susceptible populationc, number of doses in a treatment coursec, study group population sizec, vaccine valencec

count of cases in an epidemicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000498

has super-classes
count of disease casesc

count of contacted populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000088

has super-classes
countc

count of contagious populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000098

has super-classes
countc

count of disease casesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000497

has super-classes
countc
has sub-classes
count of cases in an epidemicc

count of resistant populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000099

has super-classes
countc

count of simulated contagious populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000020

has super-classes
countc

count of simulated exposed populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000019

has super-classes
countc

count of simulated populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000022

MW: I know this causes problems with our set-theoretic definition. Unfortunately the compartmental models produce fractional counts at each of their time steps, including the final step. Any ideas? I’ve considered and rejected allowing individual organisms to be fractional. Perhaps if we just replace the term “cardinality” in the definition with ‘computed size’
has super-classes
countc
countc and (is aboutop some simulated populationc)

count of simulated resistant populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000021

has super-classes
countc

count of simulated susceptible populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000018

has super-classes
countc

count of susceptible populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000087

has super-classes
countc

countingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000033

Coxiella <Bacteria>c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_776

has super-classes
Coxiellaceaec
has sub-classes
Coxiella burnetiic

Coxiella burnetiic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_777

has super-classes
Coxiella <Bacteria>c

Coxiellaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_118968

has super-classes
Legionellalesc
has sub-classes
Coxiella <Bacteria>c

Coxsackievirus A16c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_31704

has super-classes
Enterovirus Ac

Craniatac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_89593

has super-classes
Chordatac
has sub-classes
Vertebratac

creating a copyright licensec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000797

Note: for less than 24 hours, this class was a bit more specific to software licenses, but it did not have the equivalent class axiom during that time.
is equivalent to
planned processc and (o b i 0000299op some copyright licensec)
has super-classes
planned processc

Crimean-Congo hemorrhagic fever orthonairovirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1980519

has super-classes
Orthonairovirusc

Cryptosporidiidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_35082

has super-classes
Eimeriorinac
has sub-classes
Cryptosporidiumc

Cryptosporidiumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5806

has super-classes
Cryptosporidiidaec
has sub-classes
Cryptosporidium hominisc, Cryptosporidium parvumc

Cryptosporidium hominisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_237895

has super-classes
Cryptosporidiumc

Cryptosporidium parvumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5807

has super-classes
Cryptosporidiumc

Culex <genus>c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7174

has super-classes
Culicinic
has sub-classes
Culex <subgenus>c

Culex <subgenus>c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_53527

has super-classes
Culex <genus>c
has sub-classes
Culex pipiens complexc

Culex pipiens complexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_518105

has super-classes
Culex <subgenus>c
has sub-classes
Culex quinquefasciatusc

Culex quinquefasciatusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7176

has super-classes
Culex pipiens complexc

Culicidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7157

has super-classes
Culicoideac
has sub-classes
Anophelinaec, Culicinaec

Culicinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_43817

has super-classes
Culicidaec
has sub-classes
Aedinic, Culicinic

Culicinic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_53550

has super-classes
Culicinaec
has sub-classes
Culex <genus>c

Culicoideac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_41827

has super-classes
Culicomorphac
has sub-classes
Culicidaec

Culicomorphac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_43786

has super-classes
Nematocerac
has sub-classes
Culicoideac

cut-off point specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000481

has super-classes
action specificationc

Cyclosporac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_44417

has super-classes
Eimeriidaec
has sub-classes
Cyclospora cayetanensisc

Cyclospora cayetanensisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_88456

has super-classes
Cyclosporac

data encodingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000227

has super-classes
i a o 0000572

data format converterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000562

has super-classes
i a o 0000594c

data format validatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000597

has super-classes
i a o 0000594c

data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000027

has sub-classes
ascertainment fractionc, average valuec, center valuec, clinical findingc, confidence intervalc, deprecated infection case countc, employment status data itemc, epidemic thresholdc, human mobility data itemc, infection state data itemc, maximum valuec, measurement datumc, minimum valuec, obsolete vaccination efficacy measuredc, probabilityc, ratio of outdoor to indoor ovisitesc, reactive control strategy thresholdc, social interaction data itemc, standard deviationc, total disease casesc, total fatal disease casesc, vaccination efficacy inferredc, variablec

data parsingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000566

has super-classes
data transformationc
o b i 0000293op some data setc

data representational modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000658

has super-classes
directive information entityc
has sub-classes
life stages with duration and mortalityc, mean median minimum maximum summary statistics data structurec, mean with confidence intervalc, mean with standard deviationc, transmission treec

data servicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001530

Information content entity was used as specified input and output since it was more appropriate then data item or dataset.
is equivalent to
servicec and (achieves_planned_objectiveop some data service softwarec or (o b i 0000312op some compiling softwarec and (o b i 0000293op some data service softwarec)))
has super-classes
servicec

data service softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000799

has super-classes
i a o 0000594c

data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000100

has sub-classes
abiotic ecosystem data setc, age data in age brackets data setc, case series data setc, censusc, climate data setc, control strategy censusc, disease surveillance datac, epidemic data setc, genomic datac, hospital stay datasetc, human daily movement data setc, infection acquisition datasetc, infection case listc, infection case recordc, infectious disease scenarioc, mortality datac, potentially infectious contact data setc, source code repositoryc, synthetic ecosystem data setc, time sampled measurement data setc

data transformationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200000

has super-classes
planned processc
achieves_planned_objectiveop some data transformation objectivec
has sub-classes
averaging data transformationc, data parsingc, one-way sensitivity analysis of a continuous variablec

data transformation objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200166

has super-classes
objective specificationc
has sub-classes
averaging objectivec

data visualization objective specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000588

has super-classes
objective specificationc

data visualizerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000564

has super-classes
i a o 0000594c

dataset creatingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000796

is equivalent to
planned processc and (o b i 0000299op some data setc)
has super-classes
planned processc
has sub-classes
agent-level ecosystem data generationc

datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000429

has super-classes
name of temporal regionc

decolonization control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000333

typically the pathogen is a bacterium
has super-classes
individual treatment control strategyc

defense responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0006952

has super-classes
response to stressc
has sub-classes
inflammatory responsec

delay from symptoms to treatmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000258

has super-classes
durationc

delta/epsilon subdivisionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_68525

has super-classes
Proteobacteriac
has sub-classes
Epsilonproteobacteriac

Deltavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_39759

has super-classes
Virusc
has sub-classes
Hepatitis delta virusc

dengue diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_12205

has super-classes
infectious diseasec
has sub-classes
dengue hemorrhagic feverc

dengue hemorrhagic feverc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_12206

has super-classes
dengue diseasec

Dengue virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12637

has super-classes
Dengue virus groupc
has sub-classes
Dengue virus 1c, Dengue virus 2c, Dengue virus 3c, Dengue virus 4c

Dengue virus 1c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11053

has super-classes
Dengue virusc

Dengue virus 2c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11060

has super-classes
Dengue virusc

Dengue virus 3c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11069

has super-classes
Dengue virusc

Dengue virus 4c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11070

has super-classes
Dengue virusc

Dengue virus groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11052

has super-classes
Flavivirusc
has sub-classes
Dengue virusc

deprecated discrete probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000095

has super-classes
Obsolete Classc

deprecated homeostasisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000370

has super-classes
b f o 0000016c

deprecated infection case countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000399

has super-classes
data itemc

deprecated log normal distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000079

has super-classes
Obsolete Classc

descriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000476

has super-classes
i a o 0000300c

Deuterostomiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33511

has super-classes
Bilateriac
has sub-classes
Chordatac

developmental processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0032502

has super-classes
biological processc
has sub-classes
agingc

devicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000968

would include reagents
has super-classes
processed materialc
has sub-classes
computerc

Dicondyliac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_85512

has super-classes
Insectac
has sub-classes
Pterygotac

Digeneac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6179

has super-classes
Trematodac
has sub-classes
Strigeididac

digital curationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302914

has super-classes
i a o 0000572

digital object identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002110

has super-classes
i a o 0020000c

Dikaryac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_451864

has super-classes
Fungic
has sub-classes
Ascomycotac

dimensionless unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000186

has super-classes
measurement unit labelc
has sub-classes
ratioc

Dinosauriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_436486

has super-classes
Archosauriac
has sub-classes
Saurischiac

Diplomonadidac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5738

has super-classes
Fornicatac
has sub-classes
Hexamitidaec

Dipnotetrapodomorphac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1338369

has super-classes
Sarcopterygiic
has sub-classes
Tetrapodac

Dipterac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7147

has super-classes
Endopterygotac
has sub-classes
Nematocerac

directive information entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000033

has sub-classes
action specificationc, ascertainment delayc, data representational modelc, objective specificationc, plan specificationc, random number seedc

discrete nonparametric probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000252

has super-classes
nonparametric probability distributionc

discrete parametric probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000250

has super-classes
parametric probability distributionc

discrete probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000216

has super-classes
probability distributionc

diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000031

has super-classes
b f o 0000016c
has sub-classes
infectious diseasec

disease case identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000510

has super-classes
i a o 0020000c

disease coursec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000063

has super-classes
b f o 0000015c

disease identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000598

Date:
16T16:01:41Z/03/2021
Authors:
http://orcid.org/0000-0002-9881-1017
Contributors:
Mathias Brochhausen
is equivalent to
i a o 0020000c and (i a o 0000219op some diseasec)
has super-classes
i a o 0020000c
has sub-classes
disease unique identifierc

disease outcomec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000204

The infectious disease type in the XSD has a disease outcome element, which specifies whether someone became symptomatic, was hospitalized, etc. All of these outcomes require some process to occur. For sequalae of disease, it is that the realization of the disease is an etiological process that creates some other disorder. For example, fever is often occurs because of high levels of certain interleukins (which is a disorder). So I am comfortable with disease outcome as a process. It is also consistent with the probabilitistic information that will go with it, as a future probability is almost always (if not always) the probability of some event occurring (e.g., coin turning up heads, raining, developing a disease),
has super-classes
b f o 0000015c
(b f o 0000050op some disease coursec) or (immediately_preceded_byop some disease coursec)
has sub-classes
becoming asymptomaticc, becoming severely symptomaticc, becoming symptomaticc

disease outcome with probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000428

has super-classes
calculated datumc

disease state designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001293

has super-classes
study designc

disease surveillancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000545

has super-classes
planned processc

disease surveillance capabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000266

Specifies location, pathogen, host taxon, caseDefinition, sensitivity, specificity, and time delay of case detection
has super-classes
b f o 0000016c

disease surveillance datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000554

has super-classes
data setc
o b i 0000312op some disease surveillancec

disease surveillance objective specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000541

has super-classes
objective specificationc

disease surveillance trigger definitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000269

has super-classes
infectious disease control strategy trigger definitionc

disease transmission modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000174

has super-classes
algorithmc
has sub-classes
agent-based disease transmission modelc, compartmental disease transmission modelc, epidemic modelc, metapopulation disease transmission modelc

disease transmission model identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000507

has super-classes
i a o 0020000c

disease transmission model softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000561

has super-classes
simulation software applicationc

disease transmission tree estimatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000555

has super-classes
i a o 0000594c

disease unique identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000244

This class is different from its superclass, in that the identifier is non-redundant with other identifiers in its context (such as a coding system or terminology or ontology). The superclass admits of natural langugage names of diseases, whereas this one typically does not.
has super-classes
disease identifierc

disorderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000045

has super-classes
b f o 0000040c

disposition to become contaminated with a pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000144

is equivalent to
b f o 0000016c and ((r o 0000052op some b f o 0000040c) and (is realized byop only contamination acquisitionc))
has super-classes
b f o 0000016c

distancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000040

has super-classes
physical qualityc

Dorylaimiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1457286

has super-classes
Enopleac
has sub-classes
Trichocephalidac

drug identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000461

has super-classes
i a o 0020000c

drug productc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DRON_00000005

Authors:
William Hogan
has super-classes
b f o 0000030c

drug treatmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000318

is equivalent to
treatmentc and (o b i 0000293op some drug productc)
has super-classes
treatmentc
has sub-classes
antiviral treatmentc

drug treatment efficacyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000502

While we understand that 'drug efficacy' can have multiple interpretations, this class is specifically referring to drug efficacy in the context of clinical outcomes. As such, our definition excludes any mention of efficacy as it relates to pharmacodynamics.
has super-classes
efficacyc

dsDNA virus, no RNA stagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_35237

has super-classes
Virusc
has sub-classes
Herpesviralesc, Poxviridaec

dsRNA virusesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_35325

has super-classes
Virusc
has sub-classes
Reoviridaec

durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000243

has super-classes
time measurement datumc
is aboutop some b f o 0000038c and (has temporal occupantop some b f o 0000015c)
has sub-classes
antiviral efficacy delayc, colonization durationc, contamination period durationc, delay from symptoms to treatmentc, duration of treatment coursec, fixed durationc, fulminant period durationc, gonotrophic cycle durationc, infectious period durationc, latent period durationc, obsolete quarantine periodc, place closure periodc, prodromal period durationc, quarantine periodc, time between vector bitesc, time delay of treatment detectionc, time delay to case detectionc, time since time scale zeroc, uncertain durationc

duration of treatment coursec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000280

has super-classes
durationc
is aboutop some b f o 0000038c and (has temporal occupantop some treatmentc)

Eastern equine encephalitis virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11021

has super-classes
EEEV complexc

Ebolavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186536

has super-classes
Filoviridaec
has sub-classes
Bundibugyo ebolavirusc, Reston ebolavirusc, Sudan ebolavirusc, Tai Forest ebolavirusc, Zaire ebolavirusc

Ecdysozoac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1206794

has super-classes
Protostomiac
has sub-classes
Nematodac, Panarthropodac

eclosec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0007562

has super-classes
organism emergence from protective structurec

ecosystemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000097

Authors:
William R. Hogan
has super-classes
b f o 0000040c

ectosymbiosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000337

It includes situations where one organism lives on the surface of the other organism.
is equivalent to
symbiosisc and (has_participantop some organismc and (spatially disjoint fromop some organismc))
has super-classes
symbiosisc
has sub-classes
agonismc, amensalismc, antagonismc, ectosymbiotic commensalismc, ectosymbiotic mutualismc

ectosymbiotic commensalismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000348

is equivalent to
ectosymbiosisc and (not (realizesop some homeostasisc and (r o 0000052op some organismc))) and (b f o 0000051op some bodily benefitc)
has super-classes
ectosymbiosisc
has sub-classes
facultative ectosymbiotic commensalismc, obligatory ectosymbiotic commensalismc

ectosymbiotic mutualismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000351

is equivalent to
ectosymbiosisc and (b f o 0000051op some bodily benefitc) and (b f o 0000051op only bodily benefitc)
has super-classes
ectosymbiosisc
has sub-classes
facultative ectosymbiotic mutualismc, obligatory ectosymbiotic mutualismc

ectosymbiotic parasitismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000342

Example: Temnocephala chilensis and various marine wildlife
is equivalent to
intimate agonismc and (b f o 0000051op some bodily harmc and (not (b f o 0000051op some life-death temporal boundaryc)))
has super-classes
intimate agonismc
has sub-classes
facultative ectosymbiotic parasitismc, obligatory ectosymbiotic parasitismc

ectosymbiotic parasitoidismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000345

is equivalent to
ectosymbiotic parasitoidismc and (realizesop some facultative rolec and (is realized byop some bodily benefitc) and (r o 0000052op some organismc))
has super-classes
intimate agonismc
has sub-classes
facultative ectosymbiotic parasitoidismc, obligatory ectosymbiotic parasitoidismc

ED encounterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000101

has super-classes
health care encounterc

EEEV complexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_177873

has super-classes
Alphavirusc
has sub-classes
Eastern equine encephalitis virusc

effect size estimatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000085

has super-classes
measurement datumc
has sub-classes
relative riskc

efficacyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000454

We often say in natural language it is the efficacy of the triggering planned process such as vaccination. However, processes do not have properties such as roles, dispositions, functions, qualities in BFO. And this is also not a process profile, because it is not the process of a quality changing values (determinates) over time. Nevertheless, it is natural to classify efficacies based on the type of triggering process because that is what differentiates what happens when they are realized. For example, a vaccination efficacy will be realized through different processes than a quarantine efficacy. For individual treatments, the triggering process is a treatment (as defined by OGMS).
has super-classes
b f o 0000016c
has sub-classes
drug treatment efficacyc

eggs per broodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000453

has super-classes
average valuec

Ehrlichiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_943

has super-classes
Anaplasmataceaec
has sub-classes
canis groupc

Ehrlichia chaffeensisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_945

has super-classes
canis groupc

Eimeriidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5799

has super-classes
Eimeriorinac
has sub-classes
Cyclosporac

Eimeriorinac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_423054

has super-classes
Eucoccidioridac
has sub-classes
Cryptosporidiidaec, Eimeriidaec

Embryophytac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_3193

has super-classes
Streptophytinac

employment status data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000570

If an individual is a member of the labor force, the criteria that this status is selected from includes whether they are in the armed forces, employed and working, employed but absent from work for a week, and unemployed. The criteria for those not in the labor force includes whether the individual is a houseworker, suffering from a physical impairment that prevents them from working, in school, or other miscellaneous reasons.
has super-classes
data itemc

endemicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000307

has super-classes
infection in ecosystemc

Endopterygotac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33392

has super-classes
Neopterac
has sub-classes
Dipterac

endosymbiosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000354

is equivalent to
symbiosisc and (has_participantop some organismc and (r o 0001025op some organismc))
has super-classes
symbiosisc
has sub-classes
endosymbiotic commensalismc, endosymbiotic mutualismc, endosymbiotic parasitismc, endosymbiotic parasitoidismc

endosymbiotic commensalismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000364

is equivalent to
endosymbiosisc and (not (realizesop some homeostasisc and (r o 0000052op some organismc))) and (b f o 0000051op some bodily benefitc)
has super-classes
endosymbiosisc
has sub-classes
facultative endosymbiotic commensalismc, obligatory endosymbiotic commensalismc

endosymbiotic mutualismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000367

is equivalent to
endosymbiosisc and (b f o 0000051op some bodily benefitc) and (b f o 0000051op only bodily benefitc)
has super-classes
endosymbiosisc
has sub-classes
facultative endosymbiotic mutualismc, obligatory endosymbiotic mutualismc

endosymbiotic parasitismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000355

is equivalent to
endosymbiosisc and (b f o 0000051op some bodily harmc and (not (b f o 0000051op some life-death temporal boundaryc)))
has super-classes
endosymbiosisc
has sub-classes
facultative endosymbiotic parasitismc, obligatory endosymbiotic parasitismc

endosymbiotic parasitoidismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000361

is equivalent to
endosymbiosisc and (b f o 0000051op some bodily harmc and (b f o 0000051op some life-death temporal boundaryc))
has super-classes
endosymbiosisc
has sub-classes
facultative endosymbiotic parasitoidismc, obligatory endosymbiotic parasitoidismc

Enopleac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_119088

has super-classes
Nematodac
has sub-classes
Dorylaimiac

Entamoebac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5758

has super-classes
Entamoebidaec

Entamoebidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33084

has super-classes
Archamoebaec
has sub-classes
Entamoebac

Enterobacteralesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_91347

has super-classes
Gammaproteobacteriac
has sub-classes
Enterobacteriaceaec, Yersiniaceaec

Enterobacteriaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_543

has super-classes
Enterobacteralesc
has sub-classes
Escherichiac, Klebsiellac, Salmonellac, Shigellac

Enterovirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12059

has super-classes
Picornaviridaec
has sub-classes
Enterovirus Ac, Enterovirus Cc, Enterovirus Dc, n c b i taxon 147711c

Enterovirus Ac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_138948

has super-classes
Enterovirusc
has sub-classes
Coxsackievirus A16c, Enterovirus A71c

Enterovirus A71c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_39054

has super-classes
Enterovirus Ac

Enterovirus Cc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_138950

has super-classes
Enterovirusc
has sub-classes
Human poliovirus 1c, Human poliovirus 3c

Enterovirus Dc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_138951

has super-classes
Enterovirusc
has sub-classes
Enterovirus D68c

Enterovirus D68c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_42789

has super-classes
Enterovirus Dc

entry into hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044409

has super-classes
biological processc
has sub-classes
colonization acquisitionc, contamination acquisitionc, infection acquisitionc, infection acquisition from contaminated thingc, infection acquisition from infectious hostc, infection acquistion from self colonizationc

environmental history designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001226

has super-classes
study designc

environmental materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00010483

Everything under this parent must be a mass noun. All subclasses are to be understood as being composed primarily of the named entity, rather than restricted to that entity. For example, "ENVO:water" is to be understood as "environmental material composed primarly of some CHEBI:water". This class is currently being aligned to the Basic Formal Ontology. Following this alignment, its definition and the definitions of its subclasses will be revised.
has super-classes
b f o 0000040c
has sub-classes
gaseous environmental materialc

environmental system processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_02500000

Should environmental feature become something more towards a disposition, the assert would be updated to something like "has participant (environmental system or (material entity and has disposition some environmental feature))". There are several issues surrounding the reconcilliation of environmental feature and environmental system, both theoretical and practical.
has super-classes
b f o 0000015c
has sub-classes
hydrological precipitation processc

epidemicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000298

An example of multiple host species is foot and mouth disease (such as the 2001 epidemic in the UK, see: http://www.sciencemag.org/content/292/5519/1155.long) and swine flu. The foot and mouth disease epidemic affected sheep, pigs, and cattle.
has super-classes
infection in ecosystemc
(has proper occurrent partop some infectionc) and (has proper occurrent partop some infection acquisitionc)

epidemic data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000560

is equivalent to
is aboutop some epidemicc
has super-classes
data setc

epidemic intervalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000400

has super-classes
b f o 0000038c

epidemic investigation designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000326

has super-classes
study designc

epidemic modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000001

has super-classes
disease transmission modelc

epidemic peak intensityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000577

has super-classes
calculated datumc

epidemic peak weekc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000576

has super-classes
o b i 0001931c

epidemic simulatingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000055

has super-classes
simulating of process of type Xc
simulating of process of type Xc and (has_participantop some epidemic modelc)

epidemic simulator action specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000793

has super-classes
action specificationc
has sub-classes
Wolbachia effect on mating probabilityc, carrying capacity per housec, clear Wolbachia upon vector migrationc, clear infection upon vector migrationc, community transmission multiplierc, household transmission multiplierc, linear distance travelled between ovipositsc, minimum eggs per oviposition sitec, reactive control measure operatorc, school transmission multiplierc, simulation run lengthc, simulation time step action specificationc, simulator configurationc, simulator time specificationc, workplace transmission multiplierc

epidemic start weekc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000575

has super-classes
o b i 0001931c

epidemic thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000531

has super-classes
data itemc

Epsilonproteobacteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_29547

has super-classes
delta/epsilon subdivisionsc
has sub-classes
Campylobacteralesc

Equidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9788

has super-classes
Perissodactylac
has sub-classes
Equusc

Equusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9789

has super-classes
Equidaec
has sub-classes
Equus <subgenus>c

Equus <subgenus>c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_35510

has super-classes
Equusc
has sub-classes
Equus caballusc

Equus caballusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9796

has super-classes
Equus <subgenus>c

Escherichiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_561

has super-classes
Enterobacteriaceaec
has sub-classes
Escherichia colic

Escherichia colic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_562

has super-classes
Escherichiac
has sub-classes
Escherichia coli O157c

Escherichia coli O157c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1045010

has super-classes
Escherichia colic

establishment of localizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0051234

has super-classes
biological processc

Euarchontogliresc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_314146

has super-classes
Boreoeutheriac
has sub-classes
Primatesc

Eucoccidioridac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_75739

has super-classes
Coccidiac
has sub-classes
Eimeriorinac

Euglenozoac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33682

has super-classes
Eukaryotac
has sub-classes
Kinetoplastidac

Eukaryotac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2759

has super-classes
organismc
has sub-classes
Alveolatac, Amoebozoac, Euglenozoac, Fornicatac, Mus musculusc, Opisthokontac, Viridiplantaec, n c b i taxon 9606c

Eumetazoac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6072

has super-classes
Metazoac
has sub-classes
Bilateriac

Eurotiomycetesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_147545

has super-classes
leotiomycetac
has sub-classes
Eurotiomycetidaec

Eurotiomycetidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_451871

has super-classes
Eurotiomycetesc
has sub-classes
Onygenalesc

Euteleostomic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_117571

has super-classes
Teleostomic
has sub-classes
Sarcopterygiic

Eutheriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9347

has super-classes
Theriac
has sub-classes
Boreoeutheriac

excess mortality datasetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000608

Often used during epidemics or pandemics to estimate the death toll.
has super-classes
mortality datac

exposed populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000154

is equivalent to
host populationc and (r o 0002351op only hostc and (not (is bearer ofop some contagiousnessc)))
has super-classes
host populationc

extended organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000087

has super-classes
object_aggregatec

facilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000062

has super-classes
architectural structurec
has sub-classes
control strategy target facilitiesc, health care facilityc, school facilityc, workplace facilityc

facility identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000508

has super-classes
i a o 0020000c
has sub-classes
healthcare facility identifierc

facility surveyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000026

has super-classes
planned processc

facultative ectosymbiotic commensalismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000349

Example: Ophiodromus pugettensis and Patiria miniata
is equivalent to
ectosymbiotic commensalismc and (realizesop some facultative rolec and (is realized byop some bodily benefitc) and (r o 0000052op some organismc))
has super-classes
ectosymbiotic commensalismc

facultative ectosymbiotic mutualismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000352

Example: ants that feed off of honeydew from aphids, and in turn protect the aphids
is equivalent to
ectosymbiotic mutualismc and (realizesop some facultative rolec and (is realized byop some bodily benefitc) and (r o 0000052op some organismc))
has super-classes
ectosymbiotic mutualismc

facultative ectosymbiotic parasitismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000343

Example: Armillaria (type of wood fungus) and trees
is equivalent to
ectosymbiotic parasitismc and (realizesop some facultative rolec and (is realized byop some bodily benefitc) and (r o 0000052op some organismc))
has super-classes
ectosymbiotic parasitismc

facultative ectosymbiotic parasitoidismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000346

Example: Pachycrepoideus dubius and Ceratitis capitata
is equivalent to
ectosymbiotic parasitoidismc and (realizesop some facultative rolec and (is realized byop some bodily benefitc) and (r o 0000052op some organismc))
has super-classes
ectosymbiotic parasitoidismc

facultative endosymbiotic commensalismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000365

Example: Malaria and mosquito vector
is equivalent to
endosymbiotic commensalismc and (realizesop some facultative rolec and (is realized byop some bodily benefitc) and (r o 0000052op some organismc))
has super-classes
endosymbiotic commensalismc

facultative endosymbiotic mutualismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000368

Example: Hamiltonella defensa and aphids
is equivalent to
endosymbiotic mutualismc and (realizesop some facultative rolec and (is realized byop some bodily benefitc) and (r o 0000052op some organismc))
has super-classes
endosymbiotic mutualismc

facultative endosymbiotic parasitismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000359

Example: Strongyloides stercoralis (roundworm) and humans
is equivalent to
endosymbiotic parasitismc and (realizesop some facultative rolec and (is realized byop some bodily benefitc) and (r o 0000052op some organismc))
has super-classes
endosymbiotic parasitismc

facultative endosymbiotic parasitoidismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000362

Example: Naegleria fowleri (brain-eating amoeba) and humans
is equivalent to
endosymbiotic parasitoidismc and (realizesop some facultative rolec and (is realized byop some bodily benefitc) and (r o 0000052op some organismc))
has super-classes
endosymbiotic parasitoidismc

facultative rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00002024

has super-classes
b f o 0000023c

femalec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000383

has super-classes
biological sexc

female gender rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000009

has super-classes
gender rolec

female pregnancyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0007565

has super-classes
multi-organism reproductive processc

Filoviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11266

has super-classes
Mononegaviralesc
has sub-classes
Ebolavirusc, Marburgvirusc

Firmicutesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1239

has super-classes
Terrabacteria groupc
has sub-classes
Bacillic, Clostridiac

fixed control strategy start time specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000101

has super-classes
infectious disease control strategy action specificationc

fixed durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000384

has super-classes
durationc

Flaviviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11050

has super-classes
ssRNA positive-strand viruses, no DNA stagec
has sub-classes
Flavivirusc, Hepacivirusc

Flavivirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11051

has super-classes
Flaviviridaec
has sub-classes
Dengue virus groupc, Japanese encephalitis virus groupc, Spondweni virus groupc, Yellow fever virus groupc, tick-borne encephalitis virus groupc

Foot-and-mouth disease virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12110

has super-classes
Aphthovirusc

Fornicatac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_207245

has super-classes
Eukaryotac
has sub-classes
Diplomonadidac

fractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000191

has super-classes
ratioc

fraction of contaminated thingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000380

has super-classes
measurement datumc

fraction of vector adults affectedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000437

has super-classes
measurement datumc

fraction reduction of eggsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000438

has super-classes
measurement datumc

fraction reduction of larvaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000439

has super-classes
measurement datumc

Francisellac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_262

has super-classes
Francisellaceaec
has sub-classes
Francisella tularensisc

Francisella tularensisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_263

has super-classes
Francisellac

Francisellaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_34064

has super-classes
Thiotrichalesc
has sub-classes
Francisellac

fulminant periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000456

Although it is often or even typically preceded by a prodromal period, it is not always the case. Therefore "immediately preceded by some prodromal period" cannot be a necessary condition.
has super-classes
b f o 0000015c

fulminant period durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000483

has super-classes
durationc

Fungic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_4751

has super-classes
Opisthokontac
has sub-classes
Dikaryac

g a z 00000448c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00000448

definition is circular.

g e o 000000372c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000372

has sub-classes
location of sampling processc

Galliformesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_8976

has super-classes
Galloanseraec
has sub-classes
Phasianidaec

Galloanseraec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1549675

has super-classes
Neognathaec
has sub-classes
Anseriformesc, Galliformesc

Gallusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9030

has super-classes
Phasianinaec
has sub-classes
Gallus gallusc

Gallus gallusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9031

has super-classes
Gallusc

gamma distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000255

has super-classes
continuous parametric probability distributionc

Gammaproteobacteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1236

has super-classes
Proteobacteriac
has sub-classes
Enterobacteralesc, Legionellalesc, Pasteurellalesc, Pseudomonadalesc, Thiotrichalesc, Vibrionalesc

gaseous environmental materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000797

has super-classes
environmental materialc
has sub-classes
water vapourc

gender rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000007

has super-classes
b f o 0000023c
has sub-classes
female gender rolec, male gender rolec

genomic datac back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/efo/EFO_0004600

has super-classes
data setc
is aboutop some organismc

geographical migration of organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000480

has super-classes
behaviorc
has sub-classes
human travelc

Giardiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5740

has super-classes
Giardiinaec
has sub-classes
Giardia intestinalisc

Giardia intestinalisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5741

has super-classes
Giardiac

Giardiinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_68459

has super-classes
Hexamitidaec
has sub-classes
Giardiac

Gnathostomatac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7776

has super-classes
Vertebratac
has sub-classes
Teleostomic

gonotrophic cyclec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000314

has super-classes
biological processc

gonotrophic cycle durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000313

is equivalent to
is aboutop some b f o 0000038c and (has temporal occupantop some gonotrophic cyclec)
has super-classes
durationc

gonotrophic period durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000475

has super-classes
time measurement datumc

grant identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001629

has super-classes
i a o 0020000c

graph of verticesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000714

has super-classes
i a o 0000038c
has sub-classes
scale-free networkc

grazingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000358

Example: Giant panda and bamboo
is equivalent to
transient agonismc and (b f o 0000051op some bodily harmc and (not (b f o 0000051op some life-death temporal boundaryc)))
has super-classes
transient agonismc

Guanarito mammarenavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_45219

has super-classes
Mammarenavirusc

Guaroa orthobunyavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1933274

has super-classes
Orthobunyavirusc
has sub-classes
Guaroa virusc

Guaroa virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_80941

has super-classes
Guaroa orthobunyavirusc

H1N1 subtypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_114727

has super-classes
Influenza A virusc

H2N2 subtypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_114729

has super-classes
Influenza A virusc

H3N2 subtypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_119210

has super-classes
Influenza A virusc

H5N1 subtypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_102793

has super-classes
Influenza A virusc

H5N2 subtypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_119220

has super-classes
Influenza A virusc

H5N6 subtypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_329376

has super-classes
Influenza A virusc

H5N8 subtypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_232441

has super-classes
Influenza A virusc

H7N2 subtypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_119214

has super-classes
Influenza A virusc

H7N7 subtypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_119218

has super-classes
Influenza A virusc

H7N9 subtypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_333278

has super-classes
Influenza A virusc

Haemophilusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_724

has super-classes
Pasteurellaceaec
has sub-classes
Haemophilus influenzaec, [Haemophilus] ducreyic

Haemophilus influenzaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_727

has super-classes
Haemophilusc

Haemosporidac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5819

has super-classes
Aconoidasidac
has sub-classes
Plasmodiidaec

Hantavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11598

has super-classes
Bunyaviridaec

Haplorrhinic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_376913

has super-classes
Primatesc
has sub-classes
Simiiformesc

health care encounterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000097

has super-classes
health care processc
has sub-classes
ED encounterc, hospitalizationc, inpatient encounterc, outpatient encounterc

health care facilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000102

has super-classes
facilityc
has sub-classes
hospital facilityc

health care processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000096

has super-classes
b f o 0000015c
has sub-classes
health care encounterc

health care provider organization rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000015

Definition needed, but the idea is that we want to differentiate between provider and payer organizations. Some organizaitons have both roles (e.g., UPMC has a Hospital Division, a Physician Divison, and an Insurance Division).
has super-classes
organization health care rolec
has sub-classes
hospital rolec

healthcare facility identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000506

has super-classes
facility identifierc

Helicobacterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_209

has super-classes
Helicobacteraceaec
has sub-classes
Helicobacter pyloric

Helicobacter pyloric back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_210

has super-classes
Helicobacterc

Helicobacteraceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_72293

has super-classes
Campylobacteralesc
has sub-classes
Helicobacterc

Henipavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_260964

has super-classes
Paramyxoviridaec
has sub-classes
Nipah henipavirusc

Hepacivirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11102

has super-classes
Flaviviridaec
has sub-classes
Hepatitis C virusc

Hepadnaviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10404

has super-classes
Retro-transcribing virusesc
has sub-classes
Orthohepadnavirusc

Hepatitis B virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10407

has super-classes
Orthohepadnavirusc

Hepatitis C virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11103

has super-classes
Hepacivirusc

Hepatitis delta virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12475

has super-classes
Deltavirusc

Hepatitis E virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12461

has super-classes
Orthohepevirus Ac

Hepatovirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12091

has super-classes
Picornaviridaec
has sub-classes
Hepatovirus Ac

Hepatovirus Ac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12092

has super-classes
Hepatovirusc

Hepeviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_291484

has super-classes
ssRNA positive-strand viruses, no DNA stagec
has sub-classes
Orthohepevirusc

Herpesviralesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_548681

has super-classes
dsDNA virus, no RNA stagec
has sub-classes
Herpesviridaec

Herpesviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10292

has super-classes
Herpesviralesc
has sub-classes
Alphaherpesvirinaec

heterogenous carrying capacityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000463

has super-classes
i a o 0000001c

Hexamitidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5739

has super-classes
Diplomonadidac
has sub-classes
Giardiinaec

Hexapodac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6960

has super-classes
Pancrustaceac
has sub-classes
Insectac

historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000182

homeostasisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000032

has super-classes
b f o 0000016c

hospital facilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000063

has super-classes
health care facilityc

hospital functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000052

has super-classes
b f o 0000034c

hospital organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000056

is equivalent to
organizationc and (is bearer ofop some hospital rolec)
has super-classes
organizationc

hospital patient populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000030

Key motivating use case was Synthia synthetic population data.
is equivalent to
collection of humansc and (r o 0002351op only n c b i taxon 9606c and (is bearer ofop some patient rolec) and (is admitted to hospitalop exactly 1 hospital organizationc))
has super-classes
collection of humansc

hospital patient population censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000056

Motivating use case is to cover Synthia data, and possibly configuration/output of the MRSA simulator in the MIDAS community (CA-MRSA Repast).
is equivalent to
population censusc and (is aboutop some hospital patient populationc)
has super-classes
population censusc

hospital rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000054

has super-classes
health care provider organization rolec

hospital stay datasetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000600

Date:
16T16:20:48Z/03/2021
Authors:
http://orcid.org/0000-0002-9881-1017
The dataset may be limited to stays in one hospital, but hospital discharge datasets as compiled by state departments of health typically contain stays from multiple hospitals (typically every hospital) in the geographical region over which they have jurisdiction
has super-classes
data setc

hospitalizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000098

has super-classes
health care encounterc

hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000238

is equivalent to
organismc and (contains processop some reproductionc)
has super-classes
organismc
has sub-classes
asymptomatic hostc, contagious organismc, infected organismc

host populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000516

has super-classes
populationc
has sub-classes
contagious populationc, exposed populationc, immune populationc, infected populationc, recovered populationc, susceptible populationc

householdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000076

has super-classes
b f o 0000040c

household transmission multiplierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000284

has super-classes
epidemic simulator action specificationc

housing unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000074

Housing units are individuated by their residence functions.
has super-classes
b f o 0000040c

human air travelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000533

has super-classes
human travelc

Human alphaherpesvirus 1c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10298

has super-classes
Simplexvirusc

Human alphaherpesvirus 2c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10310

has super-classes
Simplexvirusc

human daily movementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000601

Date:
16T16:29:53Z/03/2021
Authors:
http://orcid.org/0000-0002-9881-1017
has super-classes
individual human behaviorc

human daily movement data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000602

Date:
16T16:32:39Z/03/2021
Authors:
http://orcid.org/0000-0002-9881-1017
is equivalent to
data setc and (is aboutop some human daily movementc)
has super-classes
data setc

human health care rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000010

Mathias Brochhausen
has super-classes
role in human social processesc
has sub-classes
patient rolec

Human herpesvirus 3c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10335

has super-classes
Varicellovirusc

Human immunodeficiency virus 1c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11676

has super-classes
Primate lentivirus groupc

Human immunodeficiency virus 2c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11709

has super-classes
Primate lentivirus groupc

human mobility data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000534

has super-classes
data itemc

Human poliovirus 1c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12080

has super-classes
Enterovirus Cc

Human poliovirus 3c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12086

has super-classes
Enterovirus Cc

human social rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000001

has super-classes
organism social rolec
r o 0000052op some n c b i taxon 9606c
has sub-classes
student rolec

human travelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000532

has super-classes
geographical migration of organismc
has sub-classes
human air travelc

hydrological precipitation processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000703

"process" is included in the label to make it clear that we are not referring to the precipitated material (e.g. snow, rain, sleet)
has super-classes
environmental system processc

i a o 0000001c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000001

has sub-classes
heterogenous carrying capacityc, reactive control strategy testc

i a o 0000029c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000029

has sub-classes
simulation identifier numeralc, simulation time step valuec, time step identifying numeralc

i a o 0000038c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000038

has sub-classes
graph of verticesc

i a o 0000055c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000055

has sub-classes
control strategy reactive endpoint fractionc, infectious disease control strategy trigger definitionc

i a o 0000178c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000178

is equivalent to
b f o 0000040c and (is bearer ofop some r o 0000059op some information content entityc)

i a o 0000300c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000300

has sub-classes
descriptionc, investigation descriptionc

i a o 0000310c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000310

has sub-classes
copyright licensec, news articlec, websitec

i a o 0000408c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000408

has sub-classes
infectious disease control strategy cover radiusc, male mosquito mating radiusc, vector bite radiusc

i a o 0000577c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000577

has sub-classes
investigation identifierc

i a o 0000594c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000594

has sub-classes
A software application that has as part an objective specification that is achieved by only a metagenomics analysis.c, computational modeling toolkitc, data format converterc, data format validatorc, data service softwarec, data visualizerc, disease transmission tree estimatorc, phylogenetic tree constructorc, simulation software applicationc

i a o 0020000c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020000

has sub-classes
Apollo pathogen codec, LOINC identifierc, ORCIDc, PubMed identifierc, RxNorm drug concept identifierc, SNOMED concept identifierc, antiviral identifierc, apollo location codec, citation identifierc, complete simulator identifierc, complete software identifierc, complete software license identifierc, digital object identifierc, disease case identifierc, disease identifierc, disease transmission model identifierc, drug identifierc, facility identifierc, grant identifierc, name of temporal regionc, scenario datec, simulated population location identifierc, simulation requester identifierc, simulator identifierc, simulator version identifierc, software developer identifierc, software identifierc, software license identifierc, software license version identifierc, software version identifierc, taxonomy identifierc, time scale namec, unique resource locatorc, vaccination identifierc, vaccine identifierc

identifier for species of casec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000485

has super-classes
taxonomy identifierc

identifier of species of diseased organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000484

has super-classes
taxonomy identifierc

identifier of species of populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000491

has super-classes
taxonomy identifierc

identity datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000132

Authors:
Amanda Hicks
An identity datum is an information content entity that is the output of some identitification process and is intended to be a truthful statement about a person's social identity. Unlike data items they are not necessilary contributed or acquired by a reliable method.
has super-classes
information content entityc
has sub-classes
racial identity datumc

immune organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000206

is equivalent to
organismc and (is bearer ofop some immune resistance to infectionc)
has super-classes
organismc
has sub-classes
immune organism that acts like it is immunec, immune organism that acts like it is not immunec

immune organism that acts like it is immunec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000299

has super-classes
immune organismc

immune organism that acts like it is not immunec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000300

has super-classes
immune organismc

immune populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000235

has super-classes
host populationc
has sub-classes
immune population acting like immunec, immune population acting like not immunec

immune population acting like immunec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000221

has super-classes
immune populationc

immune population acting like not immunec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000222

has super-classes
immune populationc

immune resistance to infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000151

is equivalent to
resistance to infectionc and (is realized byop only (has_participantop some immune systemc) and (negatively regulatesop some realizesop some susceptibilityc))
has super-classes
resistance to infectionc
has sub-classes
naturally-acquired active immune resistancec

immune systemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002405

This class was created automatically from a combination of ontologies
has super-classes
anatomical systemc

in contact withc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001961

has super-classes
structurec

incubation periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000317

has super-classes
b f o 0000015c
b f o 0000050op some b f o 0000015c and (realizesop some infectious diseasec)

indexable Apollo itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000202

A class representing an abstract type. This class has no attributes and programmers should use it to determine whether an instance should be saved or can be retrieved.
has super-classes
information content entityc

individual human behaviorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000402

has super-classes
behaviorc
has sub-classes
human daily movementc, self-initiated travel avoidance behaviorc

individual mosquito behaviorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000401

has super-classes
behaviorc

individual mosquito reproductionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000312

is equivalent to
multicellular organism reproductionc and (has active participantop some Culicidaec)
has super-classes
multicellular organism reproductionc

individual treatment control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000194

has super-classes
infectious disease control strategyc and (b f o 0000051op some action specificationc and (is aboutop some is realized byop only treatmentc))
has sub-classes
anti-infective individual treatment control strategyc, decolonization control strategyc, ring individual treatment control strategyc, treatment in the ICU control strategyc, vaccination control strategyc

individual treatment control strategy action specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000795

has super-classes
infectious disease control strategy action specificationc
has sub-classes
antiviral administration schedulec, antiviral coursec, antiviral supply schedulec, control strategy dose schedulec, vaccination administration capacityc, vaccination coursec, vaccine supply schedulec

individual treatment strategy administration capacity unit of measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000293

has super-classes
unitc

individual treatment strategy supply schedule unit of measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000292

has super-classes
unitc

indoor residual spraying vector control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000391

has super-classes
vector control strategyc

induction by virus of host apoptotic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0019051

has super-classes
positive regulation of apoptotic process by virusc
has sub-classes
induction by virus of host cysteine-type endopeptidase activity involved in apoptotic processc

induction by virus of host cysteine-type endopeptidase activity involved in apoptotic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0039651

has super-classes
induction by virus of host apoptotic processc

infected organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000209

is equivalent to
hostc and (not (r o 0000091op some contagiousnessc))
has super-classes
hostc

infected populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000233

is equivalent to
host populationc and (r o 0002351op only organismc and (contains processop some infectionc))
has super-classes
host populationc

infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000114

Authors:
M. Brochhausen
infection is reproduction of a pathogen inside some tissue of a host. By associating infection with the classes latent period and infectious period, which are associated with specific pathogen species and host species, Apollo-SV defines infection further as reproduction of a particular pathogen taxon inside some tissue of a particular host taxon.
is equivalent to
reproductionc and (occurs inop some tissuec and (b f o 0000050op some organismc))
has super-classes
reproductionc
immediately_preceded_byop some infection acquisitionc

infection acquisitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000115

Apollo-SV defines infection acquisition rather than infection transmission, which is the direction of movement of a pathogen in current use. The Apollo-SV conceptualization is simpler when accounting for infections acquired from contaminated things. The likelihood of acquisition is expressed by parameters such as the basic reproduction rate and transmission coefficient. An infection is acquired from an infectious organism or a contaminated thing.
is equivalent to
entry into hostc and (occurs inop some organismc and (is bearer ofop some susceptibilityc)) and (has_participantop some contaminated thingc or (hostc and (is bearer ofop some contagiousnessc))) and (causally upstream ofop some infectionc)
has super-classes
entry into hostc

infection acquisition datasetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000599

Date:
16T16:16:26Z/03/2021
Authors:
http://orcid.org/0000-0002-9881-1017
The dataset may include sites (e.g. types of facilities, rooms), events (e.g., church service whether in or outdoors), dates, times, geographical regions, etc. in which the sites/events are located, and so on.
is equivalent to
data setc and (is aboutop some infection acquisitionc)
has super-classes
data setc

infection acquisition from contaminated thingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000264

is equivalent to
entry into hostc and (occurs inop some organismc and (is bearer ofop some susceptibilityc)) and (has_participantop some contaminated thingc) and (causally upstream ofop some infectionc)
has super-classes
entry into hostc

infection acquisition from infectious hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000265

is equivalent to
entry into hostc and (occurs inop some organismc and (is bearer ofop some susceptibilityc)) and (has_participantop some hostc and (is bearer ofop some contagiousnessc)) and (causally upstream ofop some infectionc)
has super-classes
entry into hostc
has sub-classes
infection acquisition from vertical transmissionc, infection acquisition through sexual activity with infectious hostc

infection acquisition from vertical transmissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000521

has super-classes
infection acquisition from infectious hostc

infection acquisition through sexual activity with infectious hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000511

Note that infections that are acquired in this manner do not fall within the class of sexually transmitted infections (STI's), ipso facto. This type of transmission can also occur with non-STI pathogens--such as meningitis and Zika.
has super-classes
infection acquisition from infectious hostc

infection acquistion from self colonizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000334

is equivalent to
biological processc and (immediately_preceded_byop some colonizationc and (has_participantop some pathogenc) and (has_participantop some hostc and (r o 0000056op some immediately_precedesop some infectionc)))
has super-classes
entry into hostc

infection case listc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000397

has super-classes
data setc

infection case recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000398

is equivalent to
is aboutop exactly 1
has super-classes
data setc

infection in ecosystemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000306

has super-classes
b f o 0000015c
has proper occurrent partop some infectionc
has proper occurrent partop some infection acquisitionc
has sub-classes
endemicc, epidemicc, infection in populationc

infection in populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000331

has super-classes
infection in ecosystemc

infection state data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000217

has super-classes
data itemc

infectious diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000239

Infection is the etiological process, as defined by OGMS, for infectious disease. However, OGMS does not relate its etiological process class to its disorder class as of this writing. So it is not clear how to connect infectious disease to its infection etiological process.
is equivalent to
diseasec and (is realized byop only disease coursec and (causally downstream ofop some infectionc)) and (r o 0000052op only hostc)
has super-classes
diseasec
has sub-classes
Zika feverc, dengue diseasec, influenzac

infectious disease control objective specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000075

typically, the process endpoint is achievement of R0 < 1
has super-classes
objective specificationc
has sub-classes
control strategy target population fractionc

infectious disease control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000086

The essential goal of an infectious disease control strategy is to protect the susceptible organisms in a population.
is equivalent to
plan specificationc and (b f o 0000051op some infectious disease control objective specificationc)
has super-classes
plan specificationc
has sub-classes
case isolation control strategyc, contact tracingc, liberal sick leave control strategyc, place closure control strategyc, quarantine control strategyc, travel-related infectious disease control strategyc, vector control strategyc, voluntary household quarantine control strategyc, zoo-prophylaxis control strategyc

infectious disease control strategy action specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000794

has super-classes
action specificationc
has sub-classes
fixed control strategy start time specificationc, individual treatment control strategy action specificationc, school closure durationc, vector control action specificationc

infectious disease control strategy cover radiusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000459

has super-classes
i a o 0000408c

infectious disease control strategy executionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000029

is equivalent to
planned processc and (realizesop some r o 0000059op some plan specificationc and (b f o 0000051op some infectious disease control objective specificationc))
has super-classes
planned processc

infectious disease control strategy trigger definitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000261

Authors:
William R. Hogan
has super-classes
i a o 0000055c
has sub-classes
disease surveillance trigger definitionc, temporal trigger definitionc, treatment surveillance trigger definitionc

infectious disease forecastc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000579

has super-classes
planned processc
has sub-classes
infectious disease nowcastc, prospective infectious disease forecastc

infectious disease forecast objective specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000581

has super-classes
objective specificationc
has sub-classes
infectious disease nowcast objective specificationc

infectious disease forecast time specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000586

has super-classes
action specificationc

infectious disease forecasterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000557

has super-classes
simulation software applicationc
has sub-classes
infectious disease nowcasterc

infectious disease nowcastc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000580

has super-classes
infectious disease forecastc
has sub-classes
prospective infectious disease nowcastc

infectious disease nowcast objective specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000582

has super-classes
infectious disease forecast objective specificationc

infectious disease nowcasterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000583

has super-classes
infectious disease forecasterc

infectious disease scenarioc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000184

An infectious disease scenario contains counts of infections of a particular pathogen in a particular host in a particular ecosystem at a particular point in time, minimally. Agent-based ecosystems represent each host individually. The infectious disease scenario typically also includes a lot of additional data about the ecosystem, including data about things like transmission probabililites, control measures, the immunity or other resistance status of host individuals, and so on.
has super-classes
data setc
is aboutop some ecosystemc

infectious disease treatment efficacyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000227

need to generate class restriction. Something like: 'is realized by' some (processual_entity and (has_participant some ('Anatomical structure' and ('is physical basis of' some 'protective resistance')) we'd also like to say that the protective resistance disposition began to exist during the process. can't recall whether we should use process or processual_entity for future BFO compatibility.
has super-classes
b f o 0000016c
has sub-classes
antiviral treatment efficacyc, vaccination efficacyc

infectious periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000140

is equivalent to
(b f o 0000050op some infectionc) and (has_participantop some hostc and (is bearer ofop some contagiousnessc)) and (immediately_preceded_byop some latent periodc)
has super-classes
b f o 0000015c

infectious period durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000016

MB: In order to get the temporal occupation relations I added properties that I renamed with BFO2 URIs.
has super-classes
durationc
is aboutop some b f o 0000038c and (has temporal occupantop some infectious periodc)

infectiousnessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000404

The disposition of Influenza A virus H3N2 subtype to infect human beings, the disposition of Plasmodium vivax to infect mosquitos and humans, the disposition of foot and mouth disease virus to infect cloven-hooved animals (sheep, cows, pigs, etc.).
is equivalent to
b f o 0000016c and (r o 0000052op some organismc) and (is realized byop only infectionc)
has super-classes
b f o 0000016c

infectiousness profilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000226

This is probably a 'process profile' according to BFO2
has super-classes
b f o 0000144c

inflammatory responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0006954

This term was improved by GO_REF:0000022. It was moved.
has super-classes
defense responsec

influenzac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_8469

has super-classes
infectious diseasec

Influenza A virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11320

has super-classes
Influenzavirus Ac
has sub-classes
H1N1 subtypec, H2N2 subtypec, H3N2 subtypec, H5N1 subtypec, H5N2 subtypec, H5N6 subtypec, H5N8 subtypec, H7N2 subtypec, H7N7 subtypec, H7N9 subtypec

Influenza B virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11520

has super-classes
Influenzavirus Bc

Influenzavirus Ac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_197911

has super-classes
Orthomyxoviridaec
has sub-classes
Influenza A virusc

Influenzavirus Bc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_197912

has super-classes
Orthomyxoviridaec
has sub-classes
Influenza B virusc

information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000030

has super-classes
b f o 0000031c
has sub-classes
MIDAS scenarioc, MIDAS scenario representationc, agent model ecosystem census descriptionc, case definitionc, census reference datec, contact definitionc, control strategy start time informationc, control strategy stop time informationc, identity datumc, indexable Apollo itemc, journalc, location definitionc, lower boundc, maximum travel distance in km informationc, obsolete unit of measurec, population strata definitionc, probability distributionc, school calendarc, school closure target facilitiesc, seasonal function parameterc, target population definitionc, target populations and prioritizations informationc, treatment system logisticsc, unitc, upper boundc, vaccination efficacy for simulator configurationc

Inkoo virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_45269

has super-classes
California encephalitis orthobunyavirusc

inpatient encounterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000100

has super-classes
health care encounterc
has sub-classes
intensive care unit encounterc

Insectac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_50557

has super-classes
Hexapodac
has sub-classes
Dicondyliac

insecticide-treated net control measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000499

has super-classes
adult vector control strategyc

intensive care unit encounterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000587

has super-classes
inpatient encounterc

inter-personal contact probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000147

has super-classes
TODOc

interaction with hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0051701

has super-classes
interspecies interaction between organismsc
has sub-classes
Wolbachia effect on adult mortality rate in mosquito populationc, Wolbachia effect on egg mortality rate in mosquito populationc, Wolbachia effect on female fecundity in mosquito populationc, Wolbachia effect on larval mortality rate in mosquito populationc

interspecies interaction between organismsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044419

has super-classes
multi-organism processc
has sub-classes
interaction with hostc, social behaviorc, symbiosisc

intervention designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000115

has super-classes
study designc

intimate agonismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000341

is equivalent to
agonismc and (has_participantop min 2 )
intimate agonismc and (b f o 0000051op some bodily harmc and (b f o 0000051op some life-death temporal boundaryc))
has super-classes
agonismc
has sub-classes
ectosymbiotic parasitismc, ectosymbiotic parasitoidismc

investigation descriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001615

has super-classes
i a o 0000300c

investigation identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001628

has super-classes
i a o 0000577c

Jamestown Canyon virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_35511

has super-classes
California encephalitis orthobunyavirusc

Japanese encephalitis virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11072

has super-classes
Japanese encephalitis virus groupc

Japanese encephalitis virus groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11071

has super-classes
Flavivirusc
has sub-classes
Japanese encephalitis virusc, Koutango virusc, Murray Valley encephalitis virusc, St. Louis encephalitis virusc, West Nile virusc

joint probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000246

has super-classes
probability distributionc
has sub-classes
Bayesian networkc

journalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FBcv_0000787

has super-classes
information content entityc

Junin mammarenavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11619

has super-classes
Mammarenavirusc

Kinetoplastidac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5653

has super-classes
Euglenozoac
has sub-classes
Trypanosomatidaec

Klebsiellac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_570

has super-classes
Enterobacteriaceaec
has sub-classes
Klebsiella granulomatisc

Klebsiella granulomatisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_39824

has super-classes
Klebsiellac

Koutango virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_44025

has super-classes
Japanese encephalitis virus groupc

La Crosse virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11577

has super-classes
California encephalitis orthobunyavirusc

labelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000009

has sub-classes
measurement unit labelc

laboratory findingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000018

has super-classes
clinical findingc

laboratory test LOINC identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000494

has super-classes
LOINC identifierc

Lactobacillalesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186826

has super-classes
Bacillic
has sub-classes
Streptococcaceaec

larvicide control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000328

has super-classes
vector control strategyc
has sub-classes
Wolbachia prerelease larvicide vector control strategyc

Lassa mammarenavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11620

has super-classes
Mammarenavirusc

latent periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000118

is equivalent to
(b f o 0000050op some infectionc) and (has_participantop some hostc and (not (is bearer ofop some contagiousnessc)))
has super-classes
b f o 0000015c

latent period durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000017

MB: In order to get the temporal occupation relations I added properties that I renamed with BFO2 URIs
has super-classes
durationc
is aboutop some b f o 0000038c and (has temporal occupantop some latent periodc)

latitude and longitude coordinate pairc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000503

has super-classes
g e o 000000788c

Laurasiatheriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_314145

has super-classes
Boreoeutheriac
has sub-classes
Carnivorac, Cetartiodactylac, Perissodactylac

leakage rate of Wolbachia infection in mosquito population infected with Wolbachiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000412

has super-classes
rate measurement datumc

Legionellac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_445

has super-classes
Legionellaceaec

Legionellaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_444

has super-classes
Legionellalesc
has sub-classes
Legionellac

Legionellalesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_118969

has super-classes
Gammaproteobacteriac
has sub-classes
Coxiellaceaec, Legionellaceaec

Lentivirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11646

has super-classes
Orthoretrovirinaec
has sub-classes
Primate lentivirus groupc

leotiomycetac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_716546

has super-classes
Pezizomycotinac
has sub-classes
Eurotiomycetesc

Leptospirac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_171

has super-classes
Leptospiraceaec

Leptospiraceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_170

has super-classes
Leptospiralesc
has sub-classes
Leptospirac

Leptospiralesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1643688

has super-classes
Spirochaetiac
has sub-classes
Leptospiraceaec

liberal sick leave control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000323

has super-classes
infectious disease control strategyc

life coursec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000092

has super-classes
b f o 0000015c

life cycle temporal boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0035943

has super-classes
b f o 0000015c
has sub-classes
life-death temporal boundaryc

life stages with duration and mortalityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000417

has super-classes
data representational modelc

life-death temporal boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0035944

has super-classes
life cycle temporal boundaryc

linear distance travelled between ovipositsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000452

has super-classes
epidemic simulator action specificationc

Listeriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1637

has super-classes
Listeriaceaec
has sub-classes
Listeria grayic, Listeria ivanoviic, Listeria monocytogenesc

Listeria grayic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1641

has super-classes
Listeriac

Listeria ivanoviic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1638

has super-classes
Listeriac

Listeria monocytogenesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1639

has super-classes
Listeriac

Listeriaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186820

has super-classes
Bacillalesc
has sub-classes
Listeriac

location definitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000377

has super-classes
information content entityc

location of sampling processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000520

has super-classes
g e o 000000372c

log normal distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000254

has super-classes
continuous parametric probability distributionc

LOINC identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000493

has super-classes
i a o 0020000c
has sub-classes
laboratory test LOINC identifierc

lower boundc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000436

has super-classes
information content entityc

Lujo mammarenavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_649188

has super-classes
Mammarenavirusc

Lyssavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11286

has super-classes
Rhabdoviridaec
has sub-classes
Rabies lyssavirusc

Macacac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9539

has super-classes
Cercopithecinaec
has sub-classes
Macaca fascicularisc, Macaca mulattac

Macaca fascicularisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9541

has super-classes
Macacac

Macaca mulattac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9544

has super-classes
Macacac

Machupo mammarenavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11628

has super-classes
Mammarenavirusc

malec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000384

has super-classes
biological sexc

male gender rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000008

has super-classes
gender rolec

male mosquito mating radiusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000458

has super-classes
i a o 0000408c

Mammaliac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_40674

has super-classes
Amniotac
has sub-classes
Theriac

Mammarenavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1653394

has super-classes
Arenaviridaec
has sub-classes
Guanarito mammarenavirusc, Junin mammarenavirusc, Lassa mammarenavirusc, Lujo mammarenavirusc, Machupo mammarenavirusc, Sabia mammarenavirusc

Mandibulatac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_197563

has super-classes
Arthropodac
has sub-classes
Pancrustaceac

Marburg marburgvirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11269

has super-classes
Marburgvirusc

Marburgvirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186537

has super-classes
Filoviridaec
has sub-classes
Marburg marburgvirusc

material anatomical entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000465

has super-classes
b f o 0000040c
has sub-classes
anatomical structurec

mating behaviorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0007617

has super-classes
multi-organism reproductive behaviorc

maximum seasonal latitudec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000274

has super-classes
seasonal function parameterc

maximum travel distance in km informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000289

has super-classes
information content entityc

maximum valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000433

has super-classes
data itemc

mean air temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000514

has super-classes
average valuec

mean median minimum maximum summary statistics data structurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000462

has super-classes
data representational modelc

mean rate of hydrological precipitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000513

has super-classes
average valuec

mean with confidence intervalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000424

has super-classes
data representational modelc

mean with standard deviationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000425

has super-classes
data representational modelc

Measles virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11234

has super-classes
Morbillivirusc

measured vaccination efficacyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000089

1. Apollo-SV does not distinguish between ‘vaccine efficacy’ and ‘vaccine effectiveness.’ 2. Apollo-SV also considers the use of ‘vaccine’ in both terms a misnomer.
has super-classes
measurement datumc
measurement datumc and (is aboutop some vaccination efficacyc) and (is aboutop some PCO:collection of organismsc and (r o 0002351op only organismc and (r o 0000056op some vaccinationc)))

measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000109

has super-classes
data itemc
has sub-classes
calculated datumc, control strategy response delayc, control strategy stand-down delayc, countc, effect size estimatec, fraction of contaminated thingc, fraction of vector adults affectedc, fraction reduction of eggsc, fraction reduction of larvaec, measured vaccination efficacyc, scalar measurement datumc, susceptibility measurement datumc, time stamped measurement datumc, true negative ratec, true positive ratec

measurement unit labelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000003

has super-classes
labelc
has sub-classes
dimensionless unitc, rate unitc, u o 0000003c
is in range of
has measurement unit labelop

mechanical flight functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000556

has super-classes
b f o 0000034c

Meleagridinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_466552

has super-classes
Phasianidaec
has sub-classes
Meleagrisc

Meleagrisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9102

has super-classes
Meleagridinaec
has sub-classes
Meleagris gallopavoc

Meleagris gallopavoc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9103

has super-classes
Meleagrisc

metagenomics analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ERO_0000657

has super-classes
planned processc

metapopulation disease transmission modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000552

has super-classes
disease transmission modelc

Metazoac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33208

has super-classes
Opisthokontac
has sub-classes
Eumetazoac

Metschnikowiaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_27319

has super-classes
Saccharomycetalesc
has sub-classes
Clavisporac

MIDAS scenarioc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000161

is equivalent to
information content entityc and (is aboutop some ecosystemc and (b f o 0000111op some biotic ecosystemc and (b f o 0000111op some exposed populationc) and (b f o 0000111op some contagious populationc) and (b f o 0000111op some susceptible populationc) and (b f o 0000111op some immune populationc)))
has super-classes
information content entityc

MIDAS scenario representationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000162

need to change the text definition. need to change label to be more consistent with current Apollo terminology (possibly 'infectious disease scenario'.
is equivalent to
information content entityc and (is aboutop some ecosystemc and (b f o 0000111op some biotic ecosystemc and (b f o 0000111op some exposed populationc) and (b f o 0000111op some contagious populationc) and (b f o 0000111op some susceptible populationc) and (b f o 0000111op some immune populationc)))
has super-classes
information content entityc

migration speedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000442

has super-classes
rate measurement datumc

minimum eggs per oviposition sitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000471

has super-classes
epidemic simulator action specificationc

minimum seasonal latitudec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000275

has super-classes
seasonal function parameterc

minimum valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000432

has super-classes
data itemc

modification by symbiont of host morphology or physiologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044003

has super-classes
modification of morphology or physiology of other organism involved in symbiotic interactionc
has sub-classes
modulation by virus of host morphology or physiologyc

modification of morphology or physiology of other organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0035821

has super-classes
regulation of biological qualityc
has sub-classes
modification of morphology or physiology of other organism involved in symbiotic interactionc

modification of morphology or physiology of other organism involved in symbiotic interactionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0051817

has super-classes
modification of morphology or physiology of other organismc
has sub-classes
modification by symbiont of host morphology or physiologyc

modulation by symbiont of host programmed cell deathc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0052040

has super-classes
modulation of programmed cell death in other organism involved in symbiotic interactionc
has sub-classes
positive regulation by symbiont of host programmed cell deathc

modulation by virus of host cell cyclec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0060153

has super-classes
modulation by virus of host processc

modulation by virus of host morphology or physiologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0019048

has super-classes
modification by symbiont of host morphology or physiologyc
has sub-classes
modulation by virus of host processc

modulation by virus of host processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0019054

has super-classes
modulation by virus of host morphology or physiologyc
has sub-classes
modulation by virus of host cell cyclec

modulation of programmed cell death in other organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044531

has super-classes
regulation of programmed cell deathc
has sub-classes
modulation of programmed cell death in other organism involved in symbiotic interactionc

modulation of programmed cell death in other organism involved in symbiotic interactionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0052248

has super-classes
modulation of programmed cell death in other organismc
has sub-classes
modulation by symbiont of host programmed cell deathc

Monkeypox virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10244

has super-classes
Orthopoxvirusc

Mononegaviralesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11157

has super-classes
ssRNA negative-strand virusc
has sub-classes
Filoviridaec, Paramyxoviridaec, Pneumoviridaec, Rhabdoviridaec

Moraxellaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_468

has super-classes
Pseudomonadalesc
has sub-classes
Acinetobacterc

Morbillivirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11229

has super-classes
Paramyxoviridaec
has sub-classes
Measles virusc

morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000051

has super-classes
physical object qualityc
has sub-classes
p a t o 0000117c, structurec

mortality datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000542

has super-classes
data setc
is aboutop some populationc
has sub-classes
excess mortality datasetc

mortality ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000445

has super-classes
rate measurement datumc

mosquito mating probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000450

has super-classes
probabilityc

movement speedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000444

has super-classes
rate measurement datumc

multi-organism behaviorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0051705

has super-classes
behaviorc

multi-organism processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0051704

has super-classes
biological processc
has sub-classes
interspecies interaction between organismsc

multi-organism reproductive behaviorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044705

has super-classes
reproductive behaviorc
has sub-classes
mating behaviorc

multi-organism reproductive processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044703

has super-classes
reproductive processc
has sub-classes
female pregnancyc, parturitionc

multicellular anatomical structurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0010000

has super-classes
anatomical structurec
has sub-classes
tissuec

multicellular organism reproductionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0032504

has super-classes
reproductionc
has sub-classes
individual mosquito reproductionc

multicellular organismal agingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0010259

has super-classes
agingc

multicellular organismal reproductive behaviorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0033057

has super-classes
reproductive behaviorc

multicellular organismal reproductive processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0048609

has super-classes
reproductive processc
has sub-classes
reproductive behaviorc

Mumps virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11161

has super-classes
Rubulavirusc

Murray Valley encephalitis virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11079

has super-classes
Japanese encephalitis virus groupc

Mus musculusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10090

has super-classes
Eukaryotac

Mycobacteriaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1762

has super-classes
Corynebacterialesc
has sub-classes
Mycobacteriumc

Mycobacteriumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1763

has super-classes
Mycobacteriaceaec
has sub-classes
Mycobacterium lepraec, Mycobacterium lepromatosisc, Mycobacterium tuberculosis complexc

Mycobacterium lepraec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1769

has super-classes
Mycobacteriumc

Mycobacterium lepromatosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_480418

has super-classes
Mycobacteriumc

Mycobacterium tuberculosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1773

has super-classes
Mycobacterium tuberculosis complexc

Mycobacterium tuberculosis complexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_77643

has super-classes
Mycobacteriumc
has sub-classes
Mycobacterium tuberculosisc

n c b i taxon 147711c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_147711

has super-classes
Enterovirusc

n c b i taxon 9606c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9606

has super-classes
Eukaryotac

Nairoviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1980415

has super-classes
Bunyaviralesc
has sub-classes
Orthonairovirusc

name of a temporal boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000376

has super-classes
name of temporal regionc

name of temporal intervalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000242

has super-classes
name of temporal regionc
b f o 0000051op some u o 0000003c
has sub-classes
real date span category definitionc, real time span category definitionc

name of temporal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000395

has super-classes
i a o 0020000c
has sub-classes
datec, name of a temporal boundaryc, name of temporal intervalc

naturally-acquired active immune resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000301

has super-classes
immune resistance to infectionc

NCBI taxon identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000203

has super-classes
taxonomy identifierc

Neisseriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_482

has super-classes
Neisseriaceaec
has sub-classes
Neisseria gonorrhoeaec, Neisseria meningitidisc

Neisseria gonorrhoeaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_485

has super-classes
Neisseriac

Neisseria meningitidisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_487

has super-classes
Neisseriac

Neisseriaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_481

has super-classes
Neisserialesc
has sub-classes
Neisseriac

Neisserialesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_206351

has super-classes
Betaproteobacteriac
has sub-classes
Neisseriaceaec

Nematocerac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7148

has super-classes
Dipterac
has sub-classes
Culicomorphac

Nematodac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6231

has super-classes
Ecdysozoac
has sub-classes
Chromadoreac, Enopleac

Neognathaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_8825

has super-classes
Avesc
has sub-classes
Galloanseraec

Neopterac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33340

has super-classes
Pterygotac
has sub-classes
Endopterygotac

news articlec back to ToC or Class ToC

IRI: http://purl.org/obo/owl/FBcv#FBcv_0000209

Originally imported into Apollo-SV for purpose of indexing in OBC.ide news articles relevant to infectious disease epidemiology.
has super-classes
i a o 0000310c

Nidoviralesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_76804

has super-classes
ssRNA positive-strand viruses, no DNA stagec
has sub-classes
Coronaviridaec

Nipah henipavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_121791

has super-classes
Henipavirusc

nonparametric probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000249

has super-classes
unconditional probability distributionc
has sub-classes
continuous nonparametric probability distributionc, discrete nonparametric probability distributionc

normal distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000036

has super-classes
continuous parametric probability distributionc

Norovirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_142786

has super-classes
Caliciviridaec

number of artificially-infected vectors released per housec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000467

Class was originally created to correspond with an element from Apollo XSD v3.1.0.
has super-classes
vector control action specificationc

number of doses in a treatment coursec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000281

has super-classes
countc
is aboutop some treatmentc

number of Wolbachia-infected mosquitoes released per housec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000426

has super-classes
vector control action specificationc

nursery school rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000059

Key motivating use case was Synthia synthetic population data.
has super-classes
school rolec

nursery school student populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000044

Key motivating use case was Synthia synthetic population data.
is equivalent to
collection of humansc and (r o 0002351op only n c b i taxon 9606c and (is bearer ofop some student rolec) and (is enrolled in schoolop exactly 1 ))
has super-classes
school student populationc

nursery school student population censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000168

Motivating use case is Synthia synthetic population data.
is equivalent to
school student population censusc and (is aboutop some nursery school student populationc)
has super-classes
school student population censusc

o b i 0000471c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000471

has sub-classes
vaccination efficacy study design executionc

object_aggregatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000027

Definition: A material entity [snap:MaterialEntity] that is a mereological sum of separate object [snap:Object] entities and possesses non-connected boundaries.
has super-classes
b f o 0000040c
has sub-classes
PCO:collection of organismsc, aggregate of organizationsc, collection of organismsc, communityc, extended organismc, scattered molecular aggregatec

objective specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000005

has super-classes
directive information entityc
has sub-classes
census objective specificationc, data transformation objectivec, data visualization objective specificationc, disease surveillance objective specificationc, infectious disease control objective specificationc, infectious disease forecast objective specificationc, protect against effect of pathogenc, treatment preventable outcomec, vaccination preventable outcomec

obligatory ectosymbiotic commensalismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000350

Example: Basicladia algae and sea turtles
is equivalent to
ectosymbiotic commensalismc and (realizesop some b f o 0000034c and ((b f o 0000137op some organismc) and (r o 0000052op some anatomical structurec)))
has super-classes
ectosymbiotic commensalismc

obligatory ectosymbiotic mutualismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000353

Example: bees and flowers
is equivalent to
ectosymbiotic mutualismc and (realizesop some b f o 0000034c and ((r o 0000052op some anatomical structurec) and (proper part ofop some organismc)))
has super-classes
ectosymbiotic mutualismc

obligatory ectosymbiotic parasitismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000344

Example: European common cuckoo and other bird species (brood parasitism)
is equivalent to
ectosymbiotic parasitismc and (realizesop some b f o 0000034c and ((b f o 0000137op some parasitec) and (r o 0000052op some anatomical structurec)))
has super-classes
ectosymbiotic parasitismc

obligatory ectosymbiotic parasitoidismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000347

Example: Mutillidae (family of wasps) and other wasps/ants
is equivalent to
ectosymbiotic parasitoidismc and (realizesop some b f o 0000034c and ((b f o 0000137op some parasitoidc) and (r o 0000052op some anatomical structurec)))
has super-classes
ectosymbiotic parasitoidismc

obligatory endosymbiotic commensalismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000366

Example: Passalurus ambiguus (nematode) and rabbits
is equivalent to
endosymbiotic commensalismc and (realizesop some b f o 0000034c and ((r o 0000052op some anatomical structurec) and (proper part ofop some organismc)))
has super-classes
endosymbiotic commensalismc

obligatory endosymbiotic mutualismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000369

Example: marine worms of genus Riftia and their endosymbiotic bacteria
is equivalent to
endosymbiotic mutualismc and (realizesop some b f o 0000034c and ((r o 0000052op some anatomical structurec) and (proper part ofop some organismc)))
has super-classes
endosymbiotic mutualismc

obligatory endosymbiotic parasitismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000360

Example: Necator americanus (hookworm) and humans
is equivalent to
endosymbiotic parasitismc and (realizesop some b f o 0000034c and ((r o 0000052op some anatomical structurec) and (proper part ofop some parasitec)))
has super-classes
endosymbiotic parasitismc

obligatory endosymbiotic parasitoidismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000363

Example: Ichneumon eumerus (wasp) and Phengaris rebeli (butterfly caterpillar)
is equivalent to
endosymbiotic parasitoidismc and (realizesop some b f o 0000034c and ((r o 0000052op some anatomical structurec) and (proper part ofop some parasitoidc)))
has super-classes
endosymbiotic parasitoidismc

observation designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0300311

has super-classes
study designc

obsolete carrying capacity per housec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000316

has super-classes
average valuec

Obsolete Classc back to ToC or Class ToC

IRI: http://www.geneontology.org/formats/oboInOwl#ObsoleteClass

has sub-classes
deprecated discrete probability distributionc, deprecated log normal distributionc, obsolete_Reactive control measurec, obsolete_asymptomatic infection fraction c, obsolete_contaminationc, obsolete_educational institutionc, obsolete_immunec, obsolete_school organizationc, obsolete_simulation of population locationc, obsolete_student rolec, μc, σc

obsolete parametric probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000248

has super-classes
unconditional probability distributionc

obsolete quarantine periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000297

has super-classes
durationc

obsolete sensitivity of treatment detectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/apollo_sv/dev/apollo_sv.owl#APOLLO_SV_00000003

Deprecated due to malformed URI and created anew.
has super-classes
true positive ratec

obsolete specificity of case detectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/apollo_sv/dev/apollo_sv.owl#APOLLO_SV_00000001

deprecated due to malformed URI and created anew.
has super-classes
true negative ratec

obsolete specificity of treatment detectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/apollo_sv/dev/apollo_sv.owl#APOLLO_SV_00000002

Deprecated due to malformed URI and created anew.
has super-classes
true negative ratec

obsolete unit of measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000096

has super-classes
information content entityc

obsolete vaccination efficacy measuredc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000192

has super-classes
data itemc

obsolete_asymptomatic infection fraction c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000045

has super-classes
Obsolete Classc

obsolete_contaminationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000160

has super-classes
Obsolete Classc

obsolete_educational institutionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000111

has super-classes
Obsolete Classc

obsolete_immunec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000091

has super-classes
Obsolete Classc

obsolete_Reactive control measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000129

has super-classes
Obsolete Classc

obsolete_school organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000175

has super-classes
Obsolete Classc

obsolete_simulation of population locationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000071

has super-classes
Obsolete Classc

obsolete_student rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000180

has super-classes
Obsolete Classc

odor-baited trap control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000572

has super-classes
adult vector control strategyc

one-way sensitivity analysis of a continuous variablec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000518

Class was originally created to correspond with a complex type from Apollo XSD v3.1.0.
has super-classes
data transformationc

Onygenalesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33183

has super-classes
Eurotiomycetidaec
has sub-classes
Onygenales incertae sedisc

Onygenales incertae sedisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1593277

has super-classes
Onygenalesc
has sub-classes
Coccidioidesc

Opisthokontac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33154

has super-classes
Eukaryotac
has sub-classes
Fungic, Metazoac

ORCIDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000496

has super-classes
i a o 0020000c

organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100026

has sub-classes
Bacteriac, Eukaryotac, Virusc, contacted organismc, hostc, immune organismc, parasitec, parasitoidc, pathogenc, recovered organismc, resistant organismc, susceptible organismc

organism emergence from protective structurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0071684

has super-classes
biological processc
has sub-classes
eclosec

organism social rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000026

Defined class that we will ultimately move to an application ontology. We are leaving here for now until we determine which application ontology: it is likely going to be an ontology that does not currently (2012-06-05) exist. Ditto for its current descendants.
has super-classes
b f o 0000023c
r o 0000052op some organismc
has sub-classes
human social rolec

organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000245

has sub-classes
hospital organizationc, school organizationc

organization health care rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000027

Previous definition: An organization social role played by an organization in health care processes.
has super-classes
organization social rolec
has sub-classes
health care provider organization rolec

organization social rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000025

Defined class that we will ultimately move to an application ontology. We are leaving here for now until we determine which application ontology: it is likely going to be an ontology that does not currently (2012-06-05) exist. Ditto for its current descendants.
has super-classes
role in human social processesc
has sub-classes
organization health care rolec

Orthobunyavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11572

has super-classes
Peribunyaviridaec
has sub-classes
California encephalitis orthobunyavirusc, Guaroa orthobunyavirusc

Orthohepadnavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10405

has super-classes
Hepadnaviridaec
has sub-classes
Hepatitis B virusc

Orthohepevirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1678141

has super-classes
Hepeviridaec
has sub-classes
Orthohepevirus Ac

Orthohepevirus Ac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1678143

has super-classes
Orthohepevirusc
has sub-classes
Hepatitis E virusc

Orthomyxoviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11308

has super-classes
ssRNA negative-strand virusc
has sub-classes
Influenzavirus Ac, Influenzavirus Bc

Orthonairovirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1980517

has super-classes
Nairoviridaec
has sub-classes
Crimean-Congo hemorrhagic fever orthonairovirusc

Orthopoxvirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10242

has super-classes
Chordopoxvirinaec
has sub-classes
Monkeypox virusc, Variola virusc

Orthoretrovirinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_327045

has super-classes
Retroviridaec
has sub-classes
Lentivirusc

outpatient encounterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000099

has super-classes
health care encounterc

ovipositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0018991

has super-classes
reproductive behaviorc
has sub-classes
post-mating ovipositionc

oviposition site censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000315

has super-classes
abiotic ecosystem censusc

Ovisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9935

has super-classes
Caprinaec
has sub-classes
Ovis ariesc

Ovis ariesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9940

has super-classes
Ovisc

ovisite carrying capacityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000479

has super-classes
calculated datumc

p a t o 0000117c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000117

has super-classes
morphologyc
has sub-classes
1-D extentc

p a t o 0000122c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000122

has super-classes
1-D extentc
has sub-classes
radiusc

p a t o 0000125c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000125

has super-classes
physical qualityc

p a t o 0001025c back to ToC or Class ToC

IRI: http://purl.org/obo/owl/PATO#PATO_0001025

has super-classes
physical qualityc

Panarthropodac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_88770

has super-classes
Ecdysozoac
has sub-classes
Arthropodac

Pancrustaceac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_197562

has super-classes
Mandibulatac
has sub-classes
Hexapodac

parametric probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000477

has super-classes
probability distributionc
has sub-classes
continuous parametric probability distributionc, discrete parametric probability distributionc

Paramyxoviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11158

has super-classes
Mononegaviralesc
has sub-classes
Henipavirusc, Morbillivirusc, Paramyxovirinaec, Rubulavirusc

Paramyxovirinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11159

has super-classes
Paramyxoviridaec

parasitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000373

has super-classes
organismc

parasitoidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000374

has super-classes
organismc

parturitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0007567

has super-classes
multi-organism reproductive processc

Pasteurellaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_712

has super-classes
Pasteurellalesc
has sub-classes
Haemophilusc

Pasteurellalesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_135625

has super-classes
Gammaproteobacteriac
has sub-classes
Pasteurellaceaec

pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000237

is equivalent to
organismc and (is bearer ofop some infectiousnessc)
has super-classes
organismc

pathogen evolution modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000544

has super-classes
simulation software applicationc

pathogenicity designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001454

has super-classes
study designc

patient rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000011

has super-classes
human health care rolec

PCO:collection of organismsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000000

May be of the same or different species.
has super-classes
object_aggregatec
has sub-classes
collection of organisms of the same speciesc

Pecorac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_35500

has super-classes
Ruminantiac
has sub-classes
Bovidaec

Peptostreptococcaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186804

has super-classes
Clostridialesc
has sub-classes
Clostridioidesc

percentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000187

has super-classes
ratioc

Perdicinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_466544

has super-classes
Phasianidaec
has sub-classes
Coturnixc

Peribunyaviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1980416

has super-classes
Bunyaviralesc
has sub-classes
Orthobunyavirusc

Perissodactylac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9787

has super-classes
Laurasiatheriac
has sub-classes
Equidaec

Pezizomycotinac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_147538

has super-classes
saccharomycetac
has sub-classes
leotiomycetac

phagocytophilum groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_106179

has super-classes
Anaplasmac
has sub-classes
Anaplasma phagocytophilumc

Phasianidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9005

has super-classes
Galliformesc
has sub-classes
Meleagridinaec, Perdicinaec, Phasianinaec

Phasianinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9072

has super-classes
Phasianidaec
has sub-classes
Gallusc

phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000023

has super-classes
b f o 0000019c
has sub-classes
clinical phenotypec

Phlebovirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11584

has super-classes
Bunyaviridaec
has sub-classes
Rift Valley fever phlebovirusc

phylogenetic tree constructorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000563

has super-classes
i a o 0000594c

physical object qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001241

Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles.
has super-classes
b f o 0000019c
has sub-classes
morphologyc, physical qualityc

physical qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001018

has super-classes
physical object qualityc
has sub-classes
distancec, p a t o 0000125c, p a t o 0001025c, temperaturec

Picornaviralesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_464095

has super-classes
ssRNA positive-strand viruses, no DNA stagec
has sub-classes
Picornaviridaec

Picornaviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12058

has super-classes
Picornaviralesc
has sub-classes
Aphthovirusc, Enterovirusc, Hepatovirusc

place closure control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000229

has super-classes
infectious disease control strategyc
has sub-classes
close individual places independently strategyc, school closure control strategyc

place closure periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000287

has super-classes
durationc

plan specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000104

2/3/2009 Comment from OBI review. Action specification not well enough specified. Conditional specification not well enough specified. Question whether all plan specifications have objective specifications. Request that IAO either clarify these or change definitions not to use them
has super-classes
directive information entityc
b f o 0000051op some action specificationc
b f o 0000051op some objective specificationc
has sub-classes
algorithmc, census plan specificationc, infectious disease control strategyc, schedulec, softwarec, study designc, treatment administration capacity schedulec

planned processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000011

is equivalent to
realizesop some r o 0000059op some plan specificationc and (b f o 0000051op some objective specificationc)
has super-classes
b f o 0000015c
has sub-classes
census takingc, compiling softwarec, creating a copyright licensec, data transformationc, dataset creatingc, disease surveillancec, facility surveyc, infectious disease control strategy executionc, infectious disease forecastc, metagenomics analysisc, population surveyc, servicec, simulating of process of type Xc, software developmentc, software executionc, treatmentc, vaccine preparationc

Plasmodiidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1639119

has super-classes
Haemosporidac
has sub-classes
Plasmodiumc

Plasmodiumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5820

has super-classes
Plasmodiidaec
has sub-classes
Plasmodium (Laverania)c, Plasmodium (Plasmodium)c

Plasmodium (Laverania)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_418107

has super-classes
Plasmodiumc
has sub-classes
Plasmodium falciparumc

Plasmodium (Plasmodium)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_418103

has super-classes
Plasmodiumc
has sub-classes
Plasmodium malariaec, Plasmodium ovalec, Plasmodium vivaxc

Plasmodium falciparumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5833

has super-classes
Plasmodium (Laverania)c

Plasmodium malariaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5858

has super-classes
Plasmodium (Plasmodium)c

Plasmodium ovalec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_36330

has super-classes
Plasmodium (Plasmodium)c

Plasmodium vivaxc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5855

has super-classes
Plasmodium (Plasmodium)c

Platyhelminthesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6157

has super-classes
Bilateriac
has sub-classes
Trematodac

Pneumoviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11244

has super-classes
Mononegaviralesc
has sub-classes
Pneumovirusc

Pneumovirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11245

has super-classes
Pneumoviridaec
has sub-classes
Respiratory syncytial virusc

populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000001

It is sometimes difficult to define the physical boundaries of a population. In the case of sexually reproducing organisms, the individuals within a population have the potential to reproduce with one another during the course of their lifetimes. 'Community', as often used to describe a group of humans, is a type of population. Classes for population already exist in IDO ('organism population', IDO_0000509) and OBI ('population', OBI_0000181). The definitions should be standardized across ontologies and only one term used.
has super-classes
collection of organisms of the same speciesc
b f o 0000177op some biotic ecosystemc
has sub-classes
host populationc, target populationc

population and environment censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000188

Class was originally created to correspond with a complex type from Apollo XSD v3.1.0.
has super-classes
censusc
has sub-classes
agent level population and environment censusc

population censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000153

is equivalent to
censusc and (is aboutop some populationc) and (o b i 0000312op some population surveyc) and (o b i 0000312op only population surveyc)
has super-classes
censusc
has sub-classes
hospital patient population censusc, population colonization censusc, school student population censusc

population colonization censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000501

has super-classes
population censusc

population demographic censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000159

is equivalent to
censusc and (o b i 0000312op some population demographic surveyc) and (o b i 0000312op only population demographic surveyc)
has super-classes
censusc

population demographic surveyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000158

has super-classes
population surveyc

population dynamics modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000540

has super-classes
simulation software applicationc

population immunity surveyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000003

Comment from Mike (to do!): I checked because an infection and immunity census would involve two different census methods. One would be some kind of disease surveillance that counts infections. The other is some kind of immunity census process based on seroprevalence studies or vaccination registries.
has super-classes
population surveyc

population infection and immunity censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000157

is equivalent to
censusc and ((o b i 0000312op some population immunity surveyc) and (o b i 0000312op some population infection surveyc)) and ((o b i 0000312op some population immunity surveyc) and (o b i 0000312op only population infection surveyc))
has super-classes
censusc

population infection surveyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000155

Comment from Mike (to do!): I checked because an infection and immunity census would involve two different census methods. One would be some kind of disease surveillance that counts infections. The other is some kind of immunity census process based on seroprevalence studies or vaccination registries.
is equivalent to
population surveyc and (b f o 0000051op some countingc and (o b i 0000299op some countc and (is aboutop some exposed populationc)) and (o b i 0000299op some countc and (is aboutop some contagious populationc)))
has super-classes
population surveyc

population serology surveyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000396

has super-classes
population surveyc

population strata definitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000200

has super-classes
information content entityc

population surveyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000152

is equivalent to
planned processc and (b f o 0000051op some countingc and (o b i 0000299op some countc and (is aboutop some populationc)))
has super-classes
planned processc
has sub-classes
population demographic surveyc, population immunity surveyc, population infection surveyc, population serology surveyc

population treatment censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000187

has super-classes
censusc
has sub-classes
vaccination censusc

Porcine epidemic diarrhea virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_28295

has super-classes
Alphacoronavirusc

positive regulation by organism of apoptotic process in other organism involved in symbiotic interactionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0052501

has super-classes
positive regulation by symbiont of host programmed cell deathc
has sub-classes
positive regulation by symbiont of host apoptotic processc

positive regulation by symbiont of host apoptotic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0052151

Note that term is to be used to annotate gene products in the symbiont. To annotate host gene products, consider the biological process term 'positive regulation of apoptosis ; GO:0043065'.
has super-classes
positive regulation by organism of apoptotic process in other organism involved in symbiotic interactionc
has sub-classes
positive regulation of apoptotic process by virusc

positive regulation by symbiont of host programmed cell deathc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0052042

has super-classes
modulation by symbiont of host programmed cell deathc
has sub-classes
positive regulation by organism of apoptotic process in other organism involved in symbiotic interactionc

positive regulation of apoptotic process by virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0060139

has super-classes
positive regulation by symbiont of host apoptotic processc
has sub-classes
induction by virus of host apoptotic processc

post-mating ovipositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0060403

has super-classes
ovipositionc

potentially infectious contact data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000603

Date:
16T16:39:24Z/03/2021
Authors:
http://orcid.org/0000-0002-9881-1017
is equivalent to
data setc and (is aboutop some potentially infectious contactingc)
has super-classes
data setc

potentially infectious contact rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000406

The organism bearing this role is the organism at risk for acquiring an infection when the role is realized. Also, this role differentiates participants in a process when there are two organisms participating, so it only begins to exist during its realization, justifying its existential restriction.
is equivalent to
b f o 0000023c and (is realized byop some potentially infectious contactingc)
has super-classes
b f o 0000023c

potentially infectious contactingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000405

has super-classes
biological processc

potentially infectious sexual contactingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000515

has super-classes
sexual activityc

Powassan virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11083

has super-classes
tick-borne encephalitis virus groupc

Poxviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10240

has super-classes
dsDNA virus, no RNA stagec
has sub-classes
Chordopoxvirinaec

predationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000357

Example: lion and gazel
is equivalent to
transient agonismc and (b f o 0000051op some bodily harmc and (b f o 0000051op some life-death temporal boundaryc and (has_participantop some organismc and (r o 0002350 only Metazoac))))
has super-classes
transient agonismc

primary school rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000060

Key motivating use case was Synthia synthetic population data.
has super-classes
school rolec

primary school student populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000062

Key motivating use case was Synthia synthetic population data.
is equivalent to
collection of humansc and (r o 0002351op only n c b i taxon 9606c and (is bearer ofop some student rolec) and (is enrolled in schoolop exactly 1 ))
has super-classes
school student populationc

primary school student population censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000169

Motivating use case is Synthia synthetic population data.
is equivalent to
school student population censusc and (is aboutop some primary school student populationc)
has super-classes
school student population censusc

Primate lentivirus groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11652

has super-classes
Lentivirusc
has sub-classes
Human immunodeficiency virus 1c, Human immunodeficiency virus 2c

Primatesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9443

has super-classes
Euarchontogliresc
has sub-classes
Haplorrhinic

prioritization scheme for control measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000517

has super-classes
action specificationc

probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000470

The first criterion is derived from Kolmogorov's Probability Calculus, while the second is derived from Salmon's Admissibility and Applicability Criteria of Adequacy. Salmon's ascertainability criterion is subsumed by the definition for 'data item'.
has super-classes
data itemc
has sub-classes
affinity for buildingsc, conditional probabilityc, contamination probabilityc, mosquito mating probabilityc, probability of entry into a country is deniedc, probability of exit from a country is deniedc, shade affinityc, transmission probabilityc, vector bite probabilityc

probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000215

has super-classes
information content entityc
has sub-classes
conditional probability distributionc, discrete probability distributionc, joint probability distributionc, parametric probability distributionc, unconditional probability distributionc

probability of entry into a country is deniedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000278

has super-classes
probabilityc

probability of exit from a country is deniedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000279

has super-classes
probabilityc

probability of infection over timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000530

has super-classes
conditional probabilityc

processed materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000047

has super-classes
b f o 0000040c
has sub-classes
devicec, vaccinec

prodromal periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000455

has super-classes
b f o 0000015c

prodromal period durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000482

has super-classes
durationc

prospective infectious disease forecastc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000584

has super-classes
infectious disease forecastc

prospective infectious disease nowcastc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000585

has super-classes
infectious disease nowcastc

protect against effect of pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000141

has super-classes
objective specificationc

Proteobacteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1224

has super-classes
Bacteriac
has sub-classes
Alphaproteobacteriac, Betaproteobacteriac, Gammaproteobacteriac, delta/epsilon subdivisionsc

Protostomiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33317

has super-classes
Bilateriac
has sub-classes
Ecdysozoac

pseudomallei groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_111527

has super-classes
Burkholderiac
has sub-classes
Burkholderia pseudomalleic

Pseudomonadalesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_72274

has super-classes
Gammaproteobacteriac
has sub-classes
Moraxellaceaec

Psoroptidiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_223472

has super-classes
Astigmatac
has sub-classes
Sarcoptoideac

Pterygotac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7496

has super-classes
Dicondyliac
has sub-classes
Neopterac

PubMed identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000495

has super-classes
i a o 0020000c

purely intentional entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000000

MB: Right now we represent 'purely intentional entities' as siblings to 'information content entities'. Given their nature I am not entirly sure that this is correct. It seems that both 'information content entity' and 'simulation' are subclass to 'purely intentional entity'.
has super-classes
b f o 0000031c
has sub-classes
simulationc

PVC groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1783257

has super-classes
Bacteriac
has sub-classes
Chlamydiaec

quarantine control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000327

has super-classes
infectious disease control strategyc

quarantine periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000449

has super-classes
durationc

Rabies lyssavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11292

has super-classes
Lyssavirusc

racial identity datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000098

has super-classes
identity datumc

radiusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002390

has super-classes
p a t o 0000122c

random number seedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000148

has super-classes
directive information entityc

rate measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001554

has super-classes
scalar measurement datumc
has sub-classes
age-dependent fecundity reductionc, leakage rate of Wolbachia infection in mosquito population infected with Wolbachiac, migration speedc, mortality ratec, movement speedc, rate of hydrological precipitationc, transmission coefficientc, transmission rate of pathogen to human from Wolbachia-infected mosquito bitesc

rate of hydrological precipitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000512

has super-classes
rate measurement datumc

rate unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000280

has super-classes
measurement unit labelc

ratioc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000190

has super-classes
dimensionless unitc
has sub-classes
fractionc, percentc

ratio of outdoor to indoor ovisitesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000446

has super-classes
data itemc

reactive control measure operatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000474

has super-classes
epidemic simulator action specificationc

reactive control strategy testc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000130

has super-classes
i a o 0000001c

reactive control strategy thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000131

has super-classes
data itemc

reactive control strategy threshold unit of measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000295

has super-classes
unitc

real date span category definitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000386

has super-classes
name of temporal intervalc

real time span category definitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000385

has super-classes
name of temporal intervalc

recovered organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000302

is equivalent to
organismc and (is bearer ofop some naturally-acquired active immune resistancec)
has super-classes
organismc

recovered populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000163

has super-classes
host populationc

regulation of biological processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0050789

has super-classes
biological regulationc
has sub-classes
regulation of cellular processc

regulation of biological qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0065008

has super-classes
biological regulationc
has sub-classes
modification of morphology or physiology of other organismc

regulation of cell deathc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0010941

has super-classes
regulation of cellular processc
has sub-classes
regulation of programmed cell deathc

regulation of cellular processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0050794

has super-classes
regulation of biological processc
has sub-classes
regulation of cell deathc

regulation of programmed cell deathc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0043067

has super-classes
regulation of cell deathc
has sub-classes
modulation of programmed cell death in other organismc

relapsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000105

has super-classes
b f o 0000015c

relative riskc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000245

has super-classes
effect size estimatec

Reoviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10880

has super-classes
dsRNA virusesc
has sub-classes
Sedoreovirinaec

reproductionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0000003

has super-classes
biological processc
has sub-classes
colonizationc, infectionc, multicellular organism reproductionc

reproduction numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000043

has super-classes
average valuec
average valuec and (is aboutop some infection acquisitionc and (has_participantop some organismc and (b f o 0000137op some populationc)))
has sub-classes
basic reproduction numberc

reproductive behaviorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0019098

has super-classes
behaviorc
multicellular organismal reproductive processc
has sub-classes
multi-organism reproductive behaviorc, multicellular organismal reproductive behaviorc, ovipositionc, sexual activityc

reproductive processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0022414

has super-classes
biological processc
has sub-classes
multi-organism reproductive processc, multicellular organismal reproductive processc

resistance to infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000145

has super-classes
b f o 0000016c
has sub-classes
chemical resistance to infectionc, immune resistance to infectionc, resistance to malaria infectionc

resistance to malaria infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000336

is equivalent to
resistance to infectionc and (r o 0000052op some organismc) and (negatively regulatesop some (infectionc or infection acquisitionc) and (has_participantop some Plasmodium ovalec or Plasmodium falciparumc or Plasmodium vivaxc or Plasmodium malariaec))
has super-classes
resistance to infectionc

resistant organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000207

is equivalent to
organismc and (is bearer ofop some resistance to infectionc)
has super-classes
organismc

Respiratory syncytial virusc back to ToC or Class ToC

IRI: