Apollo Structured Vocabulary (Apollo-SV)

IRI:
http://purl.obolibrary.org/obo/apollo_sv.owl
Version IRI:
http://purl.obolibrary.org/obo/apollo_sv/releases/2024-12-24/apollo_sv.owl
Current version :
2024-12-24
Authors :
Mathias Brochhausen
Contributors :
Amanda Hicks
John Levander
Josh Hanna
Matt Diller
Mike Wagner
Shawn T. Brown
William R. Hogan
https://orcid.org/0000-0002-9881-1017
Other visualisation :
Ontology source - WebVowl

Abstract

When citing Apollo-SV, use the permanent URL of the ontology: http://purl.obolibrary.org/obo/apollo_sv.owl. When referencing a specific component of the Apollo-SV such as a class, object property, annotation property, or individual, use the component's Uniform Resource Identifier (URI).

Table of Content

  1. Classes
  2. Object Properties
  3. Data Properties
  4. Named Individuals
  5. Annotation Properties
  6. General Axioms
  7. SWRL Rules
  8. Namespace Declarations

Classes

1-D extentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001708

has super-classes
sizec
has sub-classes
lengthc

2-D extentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001709

has super-classes
sizec
has sub-classes
areac

95% confidence intervalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000092

has super-classes
TODOc

[Haemophilus] ducreyic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_730

has super-classes
Haemophilusc

abbreviation textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000605

has super-classes
textual entityc

abbreviations sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000606

has super-classes
document partc
has partop some abbreviation textual entityc

abiotic ecosystemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000100

Authors :
William R. Hogan
has super-classes
material entityc

abiotic ecosystem censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000309

is equivalent to
data setc and (has partop some countc and (is aboutop some entityc and (part ofop some abiotic ecosystemc) and (exists atop some one-dimensional temporal regionc) and (located inop some geographical regionc)))
has super-classes
censusc
has partop some countc and (is aboutop some entityc and (part ofop some abiotic ecosystemc) and (exists atop some one-dimensional temporal regionc) and (located inop some geographical regionc))
has sub-classes
oviposition site censusc

abiotic ecosystem data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000593

is equivalent to
data setc and (is aboutop some abiotic ecosystemc or abiotic ecosystem elementc)
has super-classes
data setc
is aboutop some abiotic ecosystemc or abiotic ecosystem elementc
has sub-classes
atmospheric data setc

abiotic ecosystem elementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000220

Class was originally created to correspond with an element from Apollo XSD v3.1.0.
is equivalent to
(material entityc and (not (organismc))) and (part ofop some abiotic ecosystemc)
has super-classes
material entityc
part ofop some abiotic ecosystemc
has sub-classes
contaminated abiotic thingc

abstractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000315

has super-classes
document partc
is aboutop some documentc
has sub-classes
graphical abstractc

Acaric back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6933

has super-classes
Arachnidac
has sub-classes
Acariformesc

Acariformesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6946

has super-classes
Acaric
has sub-classes
Sarcoptiformesc

Acinetobacterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_469

has super-classes
Moraxellaceaec
has sub-classes
Acinetobacter calcoaceticus/baumannii complexc

Acinetobacter baumanniic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_470

has super-classes
Acinetobacter calcoaceticus/baumannii complexc

Acinetobacter calcoaceticus/baumannii complexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_909768

has super-classes
Acinetobacterc
has sub-classes
Acinetobacter baumanniic

acknowledgements sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000324

has super-classes
document partc

Aconoidasidac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_422676

has super-classes
Apicomplexac
has sub-classes
Haemosporidac

Actinobacteria <class>c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1760

has super-classes
Actinobacteria <phylum>c
has sub-classes
Corynebacterialesc

Actinobacteria <phylum>c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_201174

has super-classes
Terrabacteria groupc
has sub-classes
Actinobacteria <class>c

action specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000007

has super-classes
directive information entityc
has sub-classes
cut-off point specificationc, epidemic simulator action specificationc, infectious disease control strategy action specificationc, infectious disease forecast time specificationc, laboratory testing capacityc, prioritization scheme for control measurec

acute respiratory illnessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000574

has super-classes
clinical phenotypec

additional results sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000702

has super-classes
results sectionc

adult vector control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000414

has super-classes
vector control strategyc
has sub-classes
Wolbachia prerelease adult vector control strategyc, insecticide-treated net control measurec, odor-baited trap control strategyc

Aedesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7158

has super-classes
Aedinic
has sub-classes
Stegomyiac

Aedes aegyptic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7159

has super-classes
Stegomyiac

Aedes albopictusc back to ToC or Class ToC

IRI: http://purl.obolibrary.obo/obo/NCBITaxon_7160

has super-classes
Stegomyiac

Aedinic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1056966

has super-classes
Culicinaec
has sub-classes
Aedesc

affinity for buildingsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000451

has super-classes
probabilityc

age data in age brackets data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000085

has super-classes
data setc
data setc and (has partop some measurement datumc and (is aboutop some one-dimensional temporal regionc and (has temporal occupantop exactly 1 historyc)))

age in years datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000504

has super-classes
time measurement datumc

age range categoryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000241

has super-classes
scalar value specificationc

age-dependent fecundity reductionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000472

has super-classes
rate measurement datumc

agent level population and environment censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000197

An instance of the an AgentLevel PopulationAndEnvironmentCensus type comprises an AgentLevel PopulationAndEnvironmentCensus Description, which describes the biotic and abiotic ecosystems elements that are counted by the census, and a URL where the census (the counts) can be retrieved.
has super-classes
population and environment censusc

agent model ecosystem census descriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000198

At present, this class corresponds with an XSD type that contains authentication plus information needed to generate a Synthia synthetic population dataset including (1) geographical location and (2) a list of household characteristics.

agent-based disease transmission modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000294

has super-classes
disease transmission modelc

agent-level ecosystem censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000165

is equivalent to
censusc and (is_specified_output_ofop some agent-level ecosystem data generationc and (has_specified_inputop some population censusc))
has super-classes
censusc
is_specified_output_ofop some agent-level ecosystem data generationc and (has_specified_inputop some population censusc)

agent-level ecosystem data generationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000164

has super-classes
dataset creatingc

aggregate of contiguous land massesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000369

is equivalent to
is aggregate ofop some land massc
has super-classes
land massc
aggregate of geographical entitiesc
is aggregate ofop some land massc
has sub-classes
aggregate of islandsc

aggregate of dependenciesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000008

Examples: all the dependencies of the United States, all of the dependencies whose territory is located in the Carribean Sea, French Overseas Collectivities, Biritish Crown Dependencies.
is equivalent to
(not (geopolitical dependencyc)) and (is aggregate ofop only geopolitical dependencyc) and (is aggregate ofop min 2 geopolitical dependencyc)
has super-classes
aggregate of governmental organizationsc
is aggregate ofop some geopolitical dependencyc

aggregate of disease coursesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000578

has super-classes
processc

aggregate of geographical entitiesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000377

is equivalent to
is aggregate ofop some geographical entityc
has super-classes
object aggregatec
is aggregate ofop some geographical entityc
has sub-classes
aggregate of contiguous land massesc, aggregate of geographical featuresc

aggregate of geographical featuresc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000378

is equivalent to
is aggregate ofop some geographical featurec
has super-classes
aggregate of geographical entitiesc
is aggregate ofop some geographical featurec

aggregate of geopolitical organizationsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000401

is equivalent to
(not (geopoli organizationc)) and (is aggregate ofop only geopoli organizationc) and (is aggregate ofop min 2 geopoli organizationc)
has super-classes
independent continuantc
is aggregate ofop some geopoli organizationc

aggregate of governmental organizationsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000337

is equivalent to
(not (governmental organizationc)) and (is aggregate ofop only governmental organizationc) and (is aggregate ofop min 2 governmental organizationc)
has super-classes
independent continuantc
is aggregate ofop some governmental organizationc
has sub-classes
aggregate of dependenciesc, aggregate of major administrative subdivisionsc, aggregate of sovereign statesc, obsolete aggregate of dependenciesc, obsolete aggregate of major administrative subdivisionsc

aggregate of islandsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000390

is equivalent to
is aggregate ofop some islandc
has super-classes
aggregate of contiguous land massesc
is aggregate ofop some islandc

aggregate of major administrative subdivisionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000007

Examples: all the major administrative subdivisions of the United States (which is different from the U.S. itself), all the major administrative subdivisions with a bicameral legislature, all the major administrative subdivisions with a judiciary, etc.
is equivalent to
(not (major administrative subdivisionc)) and (is aggregate ofop only major administrative subdivisionc) and (is aggregate ofop min 2 major administrative subdivisionc)
has super-classes
aggregate of governmental organizationsc
is aggregate ofop some major administrative subdivisionc

aggregate of objectual organismsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000022

Any arbitrary collection of organisms. They need not be of the same taxonomic class.
has super-classes
object aggregatec
has memberop only objectc and organismc
has sub-classes
collection of humansc

aggregate of organizationsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000033

It is often convenient to group organizations together that otherwise might not even interact with one another.
is equivalent to
(not (organizationc)) and (has memberop only organizationc) and (has memberop min 2 organizationc)
has super-classes
material entityc
has memberop some organizationc

aggregate of sovereign statesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000404

examples: all the sovereign states in North America, all the sovereign states with a GDP below or exceeding a particular quantity of money, all the sovereign states with a constitutional monarchy, all the sovereign states who belong to the U.N. (which is different than the U.N. itself), etc.
is equivalent to
(not (sovereign statec)) and (is aggregate ofop only sovereign statec) and (is aggregate ofop min 2 sovereign statec)
has super-classes
aggregate of governmental organizationsc
is aggregate ofop some sovereign statec

agonismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000340

is equivalent to
ectosymbiosisc and (has participantop some organismc and (participates inop some bodily harmc)) and (has participantop some organismc and (participates inop some bodily benefitc))
has super-classes
ectosymbiosisc
has participantop some organismc and (participates inop some bodily harmc)
has participantop some organismc and (participates inop some bodily benefitc)
has sub-classes
intimate agonismc, transient agonismc

air temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000753

has super-classes
temperature of airc

Alcaligenaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_506

has super-classes
Burkholderialesc
has sub-classes
Bordetellac

algorithmc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000064

has super-classes
plan specificationc
has sub-classes
disease transmission modelc, network modelc, parameter estimation modelc, scale-free network modelc, software interpreterc

Alphacoronavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_693996

has super-classes
Coronavirinaec
has sub-classes
Porcine epidemic diarrhea virusc

Alphaherpesvirinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10293

has super-classes
Herpesviridaec
has sub-classes
Simplexvirusc, Varicellovirusc

Alphaproteobacteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_28211

has super-classes
Proteobacteriac
has sub-classes
Rhizobialesc, Rickettsialesc

Alphavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11019

has super-classes
Togaviridaec
has sub-classes
Barmah Forest virusc, EEEV complexc, Ross River virusc, SFV complexc, WEEV complexc

Alveolatac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33630

has super-classes
Eukaryotac
has sub-classes
Apicomplexac

amensalismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000339

Example: Spanish ibex and weevils of the genus Timarcha
is equivalent to
ectosymbiosisc and (not (realizesop some homeostasisc and (characteristic ofop some organismc))) and (has participantop some organismc and (participates inop some bodily harmc))
has super-classes
ectosymbiosisc
has participantop some organismc and (participates inop some bodily harmc)

Amniotac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32524

has super-classes
Tetrapodac
has sub-classes
Mammaliac, Sauropsidac

Amoebozoac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_554915

has super-classes
Eukaryotac
has sub-classes
Archamoebaec

analysis subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000008

has super-classes
subset ontology modulec

Anaplasmac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_768

has super-classes
Anaplasmataceaec
has sub-classes
phagocytophilum groupc

Anaplasma phagocytophilumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_948

has super-classes
phagocytophilum groupc

Anaplasmataceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_942

has super-classes
Rickettsialesc
has sub-classes
Anaplasmac, Ehrlichiac

Anatidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_8830

has super-classes
Anseriformesc

anatomical entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001062

has super-classes
independent continuantc
has sub-classes
material anatomical entityc

anatomical groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000480

has super-classes
anatomical structurec
has sub-classes
anatomical systemc

anatomical structurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000061

has super-classes
material anatomical entityc
has sub-classes
anatomical groupc, multicellular anatomical structurec

anatomical systemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000467

has super-classes
anatomical groupc
has sub-classes
immune systemc

Ancylostomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_29169

has super-classes
Ancylostomatinaec
has sub-classes
Ancylostoma caninumc, Ancylostoma duodenalec

Ancylostoma caninumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_29170

has super-classes
Ancylostomac

Ancylostoma duodenalec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_51022

has super-classes
Ancylostomac

Ancylostomatidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33278

has super-classes
Ancylostomatoideac
has sub-classes
Ancylostomatinaec

Ancylostomatinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_53469

has super-classes
Ancylostomatidaec
has sub-classes
Ancylostomac

Ancylostomatoideac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33277

has super-classes
Strongylidac
has sub-classes
Ancylostomatidaec

Anopheles <genus>c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7164

has super-classes
Anophelinaec
has sub-classes
Anopheles <subgenus>c

Anopheles <subgenus>c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_44482

has super-classes
Anopheles <genus>c

Anophelinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_43816

has super-classes
Culicidaec
has sub-classes
Anopheles <genus>c

Anseriformesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_8826

has super-classes
Galloanseraec
has sub-classes
Anatidaec

antagonismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000338

Example: competition between lions and hyenas for food
has super-classes
ectosymbiosisc

anti-bacterial control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000305

has super-classes
anti-infective individual treatment control strategyc

anti-infective individual treatment control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000304

has super-classes
individual treatment control strategyc
has sub-classes
anti-bacterial control strategyc, antiviral control strategyc

antiviral administration schedulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000052

has super-classes
individual treatment control strategy action specificationc

antiviral compliancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000050

MB: This class is still awaiting its class restriction. It should be restricted as being about a population that has members that are eligible for an antiviral treatment against the members that are eligible and consented the antiviral treatment. There is a class "eligibility rule" in OBI (http://purl.obolibrary.org/obo/OBI_0500026), but it is restricted by definition to studies. I put in an issue in the OBI issue tracker. The consenting process and its specified outcome should be done in d-acts, but needs to be done properly.
has super-classes
calculated datumc

antiviral control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000181

has super-classes
anti-infective individual treatment control strategyc

antiviral coursec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000138

has super-classes
individual treatment control strategy action specificationc

antiviral drugc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_36044

The usage or intended usage of a drug product to act against a viral infection of a host.
has super-classes
rolec

antiviral efficacy delayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000049

has super-classes
durationc

antiviral identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000122

has super-classes
identifierc
denotesop some material entityc

antiviral supply schedulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000051

has super-classes
individual treatment control strategy action specificationc

antiviral treatmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000171

is equivalent to
drug treatmentc and (has_specified_inputop some antiviral drugc)
has super-classes
drug treatmentc
has_specified_inputop some antiviral drugc

antiviral treatment efficacyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000048

MB: For DL reasons the easiest way to formalize the definition was to assume only organism that are either host or not immune undergo antiviral treatment. Is that adequate? I assume this'll create problems…
has super-classes
infectious disease treatment efficacyc

Aphthovirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12109

has super-classes
Picornaviridaec
has sub-classes
Foot-and-mouth disease virusc

Apicomplexac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5794

has super-classes
Alveolatac
has sub-classes
Aconoidasidac, Conoidasidac

apollo location codec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000259

Authors :
William R. Hogan
has super-classes
identifierc

Apollo pathogen codec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000219

has super-classes
identifierc

apollo simulator configurationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000210

has super-classes
simulator configurationc

appearance of disorderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000626

is equivalent to
results in formation ofop some disorderc
has super-classes
processc
results in formation ofop some disorderc

Arachnidac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6854

has super-classes
Cheliceratac
has sub-classes
Acaric

Archaeac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2157

has super-classes
organismc

Archamoebaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_555406

has super-classes
Amoebozoac
has sub-classes
Entamoebidaec

Archelosauriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1329799

has super-classes
Sauriac
has sub-classes
Archosauriac

architectural structurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000061

"Building" is a subclass of this.
has super-classes
material entityc
has sub-classes
facilityc

Archosauriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_8492

has super-classes
Archelosauriac
has sub-classes
Dinosauriac

areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001323

MIREOT'd into GEO to represent the area quality of a geographical region, including land area and water area.
has super-classes
2-D extentc

area unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000047

has super-classes
measurement unit labelc
has members
square meterni, square mileni

Arenaviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11617

has super-classes
ssRNA negative-strand virusc
has sub-classes
Mammarenavirusc

Arthropodac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6656

has super-classes
Panarthropodac
has sub-classes
Cheliceratac, Mandibulatac

ascertainment delayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000134

per Mike Wagner, this is input
has super-classes
directive information entityc

ascertainment fractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000135

fraction of organisms (usually infected) that a surveillance system detects out of the total population
has super-classes
data itemc

Ascomycotac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_4890

has super-classes
Dikaryac
has sub-classes
saccharomycetac

asexual reproductionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0019954

has super-classes
reproductionc
reproductive processc

assigning a centrally registered identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000574

has super-classes
planned processc
has_specified_outputop some centrally registered identifier symbolc
has participantop some centrally registered identifier registryc

associating information with a centrally registered identifier in its registryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000575

has super-classes
planned processc
has_specified_inputop some centrally registered identifier symbolc
has participantop some centrally registered identifier registryc

Astigmatac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6951

has super-classes
Sarcoptiformesc
has sub-classes
Psoroptidiac

asymptomatic hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000236

has super-classes
host organismc

atmospherec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000107

Authors :
William R. Hogan
atmosphere of Earth, Earth's moon, Saturn, Titan, etc.
has super-classes
fiat objectc
has members
atmosphere of the Earthni

atmosphere of geographical regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000110

is equivalent to
geographical featurec and (part ofop value atmosphere of the Earth)
has super-classes
geographical featurec

atmospheric data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000594

is equivalent to
abiotic ecosystem data setc and (is aboutop some part ofop value atmosphere of the Earth)
has super-classes
abiotic ecosystem data setc
is aboutop some part ofop value atmosphere of the Earth

atmospheric water vapourc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000268

has super-classes
water vapourc

atmospheric weatherc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001079

This class refers to the common usage of "weather", referencing the state of a (part of) an astronomical body's atmosphere.
has super-classes
weatherc

author contributions sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000323

has super-classes
document partc

author identificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000302

has super-classes
written namec

author information sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000607

has super-classes
document partc
has partop some author information textual entityc

author information textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000608

has super-classes
textual entityc

author listc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000321

has super-classes
document partc
has partop some author identificationc

author rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000442

has super-classes
rolec

author summary sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000609

has super-classes
document partc
has partop some author summary textual entityc

author summary textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000610

has super-classes
textual entityc

availability sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000611

has super-classes
document partc
has partop some availability textual entityc

availability textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000612

has super-classes
textual entityc

average valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000679

is equivalent to
data itemc and (is_specified_output_ofop some averaging data transformationc)
has super-classes
data itemc
is_specified_output_ofop some averaging data transformationc
has sub-classes
Breteau Indexc, eggs per broodc, mean air temperaturec, mean rate of hydrological precipitationc, weighted arithmetic meanc

averaging data transformationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200170

is equivalent to
(has_specified_outputop some average valuec) or (achieves_planned_objectiveop some averaging objectivec)
has super-classes
data transformationc

averaging objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000425

has super-classes
data transformation objectivec

Avesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_8782

has super-classes
Coelurosauriac
has sub-classes
Neognathaec

Bacillaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186817

has super-classes
Bacillalesc
has sub-classes
Bacillusc

Bacillalesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1385

has super-classes
Bacillic
has sub-classes
Bacillaceaec, Listeriaceaec, Staphylococcaceaec

Bacillic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_91061

has super-classes
Firmicutesc
has sub-classes
Bacillalesc, Lactobacillalesc

Bacillusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1386

has super-classes
Bacillaceaec
has sub-classes
Bacillus cereus groupc

Bacillus anthracisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1392

has super-classes
Bacillus cereus groupc

Bacillus cereus groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_86661

has super-classes
Bacillusc
has sub-classes
Bacillus anthracisc

Bacteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2

has super-classes
organismc
has sub-classes
PVC groupc, Proteobacteriac, Spirochaetesc, Terrabacteria groupc

Barmah Forest virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11020

has super-classes
Alphavirusc

base ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000001

has super-classes
ontology modulec

basic reproduction numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000002

MB: Here we run into the well know DL problem that we cannot specify that the infectious agent that is transmitted is of the same type that the infectious agent the population is susceptible to.
has super-classes
reproduction numberc and (is aboutop some infection acquisitionc and (has participantop some organismc and (proper part of continuant at all timesop some susceptible populationc)))

Bayesian credible intervalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000093

has super-classes
TODOc

Bayesian networkc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000082

has super-classes
joint probability distributionc

becoming asymptomaticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000223

has super-classes
disease outcomec

becoming severely symptomaticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000225

has super-classes
disease outcomec

becoming symptomaticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000224

has super-classes
disease outcomec

behaviorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0007610

1. Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation reviews. 2. While a broader definition of behavior encompassing plants and single cell organisms would be justified on the basis of some usage (see PMID:20160973 for discussion), GO uses a tight definition that limits behavior to animals and to responses involving the nervous system, excluding plant responses that GO classifies under development, and responses of unicellular organisms that has general classifications for covering the responses of cells in multicellular organisms (e.g. cell chemotaxis).
has super-classes
multicellular organismal processc
bodily processc
has sub-classes
geographical movement of organismc, individual human behaviorc, individual mosquito behaviorc, reproductive behaviorc

betac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000146

it is the same thing as transmission coefficient

beta distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000078

has super-classes
continuous parametric probability distributionc

Betacoronavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_694002

has super-classes
Coronavirinaec
has sub-classes
Middle East respiratory syndrome coronavirusc, SARS coronavirusc

Betaproteobacteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_28216

has super-classes
Proteobacteriac
has sub-classes
Burkholderialesc, Neisserialesc

Bilateriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33213

has super-classes
Eumetazoac
has sub-classes
Deuterostomiac, Platyhelminthesc, Protostomiac

biological processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0008150

A biological process is an evolved process
has super-classes
processc
has sub-classes
biological process involved in interspecies interaction between organismsc, contaminationc, establishment of localizationc, gonotrophic cyclec, immune responsec, multi-organism processc, multicellular organismal processc, potentially infectious contactingc, reproductionc, reproductive processc, viral processc
is disjoint with
gene product or complex activityc, planned processc

biological process involved in interaction with hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0051701

has super-classes
biological process involved in symbiotic interactionc
has sub-classes
Wolbachia effect on adult mortality rate in mosquito populationc, Wolbachia effect on egg mortality rate in mosquito populationc, Wolbachia effect on female fecundity in mosquito populationc, Wolbachia effect on larval mortality rate in mosquito populationc, entry into hostc

biological process involved in interspecies interaction between organismsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044419

has super-classes
biological processc
has sub-classes
biological process involved in symbiotic interactionc, symbiosisc

biological process involved in symbiotic interactionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044403

has super-classes
biological process involved in interspecies interaction between organismsc
has sub-classes
biological process involved in interaction with hostc

biological sexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000047

has super-classes
qualityc
has sub-classes
femalec, malec

biotic ecosystemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000104

Authors :
William R. Hogan
has super-classes
material entityc

bodily benefitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000372

has super-classes
processc

bodily harmc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000371

has super-classes
processc

bodily processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000060

From OGMS: http://purl.obolibrary.org/obo/OGMS_0000060
has super-classes
processc
has participant at all timesop some extended organismc
has sub-classes
behaviorc

bodily qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MF_0000074

has super-classes
qualityc
has sub-classes
mental qualityc

body of waterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000373

has super-classes
geographical regionc

border control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000228

has super-classes
travel-related infectious disease control strategyc

Bordetellac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_517

has super-classes
Alcaligenaceaec
has sub-classes
Bordetella pertussisc

Bordetella pertussisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_520

has super-classes
Bordetellac

Boreoeutheriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1437010

has super-classes
Eutheriac
has sub-classes
Euarchontogliresc, Laurasiatheriac

Borreliac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_138

has super-classes
Borreliaceaec

Borreliaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1643685

has super-classes
Spirochaetalesc
has sub-classes
Borreliac

Bosc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9903

has super-classes
Bovinaec
has sub-classes
Bos taurusc

Bos taurusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9913

has super-classes
Bosc

Bovidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9895

has super-classes
Pecorac
has sub-classes
Bovinaec, Caprinaec

Bovinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_27592

has super-classes
Bovidaec
has sub-classes
Bosc

Breteau Indexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000311

has super-classes
average valuec

bridge ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000004

has super-classes
ontology modulec
has sub-classes
taxonomic bridge ontology modulec

Brucellac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_234

has super-classes
Brucellaceaec
has sub-classes
Brucella abortusc, Brucella canisc, Brucella melitensisc, Brucella suisc

Brucella abortusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_235

has super-classes
Brucellac

Brucella canisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_36855

has super-classes
Brucellac

Brucella melitensisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_29459

has super-classes
Brucellac

Brucella suisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_29461

has super-classes
Brucellac

Brucellaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_118882

has super-classes
Rhizobialesc
has sub-classes
Brucellac

Bundibugyo ebolavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_565995

has super-classes
Ebolavirusc

Bunyaviralesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1980410

has super-classes
ssRNA negative-strand virusc
has sub-classes
Nairoviridaec, Peribunyaviridaec

Bunyaviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11571

has super-classes
ssRNA negative-strand virusc
has sub-classes
Hantavirusc, Phlebovirusc

Burkholderiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32008

has super-classes
Burkholderiaceaec
has sub-classes
pseudomallei groupc

Burkholderia pseudomalleic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_28450

has super-classes
pseudomallei groupc

Burkholderiaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_119060

has super-classes
Burkholderialesc
has sub-classes
Burkholderiac

Burkholderialesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_80840

has super-classes
Betaproteobacteriac
has sub-classes
Alcaligenaceaec, Burkholderiaceaec

calculated datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302867

APOLLO DEVELOPERS: We need to check whether OBI changes the label and the hierarchical place of this class.
has super-classes
measurement datumc
has sub-classes
antiviral compliancec, disease outcome with probabilityc, epidemic peak intensityc, ovisite carrying capacityc, statistical confidencec, vaccination compliancec

Caliciviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11974

has super-classes
ssRNA positive-strand viruses, no DNA stagec
has sub-classes
Norovirusc

California encephalitis orthobunyavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1933264

has super-classes
Orthobunyavirusc
has sub-classes
California encephalitis virusc, Inkoo virusc, Jamestown Canyon virusc, La Crosse virusc, Snowshoe hare virusc, Tahyna virusc

California encephalitis virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_35305

has super-classes
California encephalitis orthobunyavirusc

Campylobacterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_194

has super-classes
Campylobacteraceaec

Campylobacteraceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_72294

has super-classes
Campylobacteralesc
has sub-classes
Campylobacterc

Campylobacteralesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_213849

has super-classes
Epsilonproteobacteriac
has sub-classes
Campylobacteraceaec, Helicobacteraceaec

Candida aurisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_498019

has super-classes
Clavispora/Candida cladec

Canidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9608

has super-classes
Caniformiac
has sub-classes
Canisc

Caniformiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_379584

has super-classes
Carnivorac
has sub-classes
Canidaec

Canisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9611

has super-classes
Canidaec
has sub-classes
Canis lupusc

canis groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_106178

has super-classes
Ehrlichiac
has sub-classes
Ehrlichia chaffeensisc

Canis lupusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9612

has super-classes
Canisc
has sub-classes
Canis lupus familiarisc

Canis lupus familiarisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9615

has super-classes
Canis lupusc

Caprac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9922

has super-classes
Caprinaec
has sub-classes
Capra hircusc

Capra hircusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9925

has super-classes
Caprac

Caprinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9963

has super-classes
Bovidaec
has sub-classes
Caprac, Ovisc

captionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000304

has super-classes
textual entityc
is aboutop some figurec

Carnivorac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33554

has super-classes
Laurasiatheriac
has sub-classes
Caniformiac

carrying capacity per housec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000473

Mosquitos can sense eggs in ovisite so tend to lay in places not at max.
has super-classes
epidemic simulator action specificationc

cartesian spatial coordinate datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000400

has super-classes
data itemc
denotesop some zero-dimensional spatial regionc
has coordinate unit labelop exactly 1
has sub-classes
one dimensional cartesian spatial coordinate datumc, three dimensional cartesian spatial coordinate datumc, two dimensional cartesian spatial coordinate datumc
is in domain of
has coordinate unit labelop, has x coordinate valuedp, has y coordinate valuedp, has z coordinate valuedp

case definitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000296

has super-classes
information content entityc

case isolation control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000230

has super-classes
infectious disease control strategyc
has sub-classes
contact isolation control measurec

case report sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000613

has super-classes
document partc
has partop some case report textual entityc

case report textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000614

has super-classes
textual entityc

case seriesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000558

is equivalent to
investigationc and (realizesop some concretizesop some disease state designc) and (has occurrent partop some population surveyc and (has_specified_inputop some case definitionc))
has super-classes
investigationc
realizesop some concretizesop some disease state designc
has occurrent partop some population surveyc and (has_specified_inputop some case definitionc)

case series data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000559

has super-classes
data setc
is_specified_output_ofop some case seriesc

Catarrhinic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9526

has super-classes
Simiiformesc
has sub-classes
Cercopithecoideac

categorical variablec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000252

has super-classes
variablec

censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000173

has super-classes
data setc and (has partop some countc and (is aboutop some entityc and (exists atop some one-dimensional temporal regionc) and (located inop some geographical regionc)))
has sub-classes
abiotic ecosystem censusc, agent-level ecosystem censusc, contaminated thing censusc, control strategy censusc, control strategy inventory censusc, laboratory testing facility censusc, population and environment censusc, population censusc, population demographic censusc, population infection and immunity censusc, population treatment censusc, school facility censusc

census objective specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000387

Today, census taking typically consist of some mixture of counting the number of individuals in a population and estimating the numbers of subpopulations that are prone to overcounting or undercounting.
has super-classes
objective specificationc

census of vaccination suppliesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000609

Date :
01T00:03:00Z/02/2022
Authors :
https://orcid.org/0000-0002-9881-1017
Motivated my MIDAS coordination center indexing of COVID-19 data, software, etc. By "similar vaccines" we typically mean same pathogen, but could be similar in other ways (requiring refrigeration of a certain kind).
has super-classes
control strategy inventory censusc
data setc and (has partop some countc and (is aboutop some vaccinec))

census plan specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000388

has super-classes
plan specificationc

census reference datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000240

has super-classes
information content entityc

census takingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000389

has super-classes
planned processc

center valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000674

has super-classes
data itemc

centrally registered identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000578

has super-classes
identifierc
has partop some centrally registered identifier symbolc
has partop some denotesop some centrally registered identifier registryc
has sub-classes
ORCID identifierc

centrally registered identifier registryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000579

has super-classes
code setc

centrally registered identifier symbolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000577

has super-classes
symbolc
part ofop some centrally registered identifierc
has sub-classes
investigation identifierc

Cercopithecidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9527

has super-classes
Cercopithecoideac
has sub-classes
Cercopithecinaec

Cercopithecinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9528

has super-classes
Cercopithecidaec
has sub-classes
Macacac

Cercopithecoideac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_314294

has super-classes
Catarrhinic
has sub-classes
Cercopithecidaec

Cetartiodactylac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_91561

has super-classes
Laurasiatheriac
has sub-classes
Ruminantiac, Suinac

characteristicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000020

is defined by
http://purl.obolibrary.org/obo/bfo.owl
A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
has super-classes
continuantc
part ofop only characteristicc
has sub-classes
qualityc, qualityc, realizablec
is in domain of
concretizesop
is in range of
bearer ofop, is concretized asop
is disjoint with
independent continuantc, generically dependent continuantc, independent continuantc, generically dependent continuantc

Cheliceratac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6843

has super-classes
Arthropodac
has sub-classes
Arachnidac

chemical resistance to infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000335

As with all dispositions, chemical resistance need not be realized to exist. The presence of cholorquine confers this disposition even if the person is never bitten by a mosquito, let alone a malaria-laden mosquito.
has super-classes
resistance to infectionc and (has material basis at all timesop some scattered molecular aggregatec)

Chikungunya virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_37124

has super-classes
SFV complexc

Chlamydiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_810

has super-classes
Chlamydia/Chlamydophila groupc
has sub-classes
Chlamydia psittacic, Chlamydia trachomatisc

Chlamydia psittacic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_83554

has super-classes
Chlamydiac

Chlamydia trachomatisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_813

has super-classes
Chlamydiac

Chlamydia/Chlamydophila groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1113537

has super-classes
Chlamydiaceaec
has sub-classes
Chlamydiac

Chlamydiaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_809

has super-classes
Chlamydialesc
has sub-classes
Chlamydia/Chlamydophila groupc

Chlamydiaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_204428

has super-classes
PVC groupc
has sub-classes
Chlamydiiac

Chlamydialesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_51291

has super-classes
Chlamydiiac
has sub-classes
Chlamydiaceaec

Chlamydiiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_204429

has super-classes
Chlamydiaec
has sub-classes
Chlamydialesc

Chordatac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7711

has super-classes
Deuterostomiac
has sub-classes
Craniatac

Chordopoxvirinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10241

has super-classes
Poxviridaec
has sub-classes
Orthopoxvirusc

Chromadoreac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_119089

has super-classes
Nematodac
has sub-classes
Rhabditidac

citationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000301

has super-classes
textual entityc
is aboutop some documentc

citation identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000519

has super-classes
identifierc

clade namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000232

Some regard a clade to be a single branch on the tree of life. [http://en.wikipedia.org/wiki/Clade]
has super-classes
taxonomy identifierc

Clavisporac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_36910

has super-classes
Metschnikowiaceaec
has sub-classes
Clavispora/Candida cladec

Clavispora/Candida cladec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1540022

has super-classes
Clavisporac
has sub-classes
Candida aurisc

clear infection upon vector migrationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000468

Class was originally created to correspond with an element from Apollo XSD v3.1.0.
has super-classes
epidemic simulator action specificationc

clear Wolbachia upon vector migrationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000427

has super-classes
epidemic simulator action specificationc

climate data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000591

is equivalent to
data setc and ((is aboutop some environmental system processc) or (is aboutop some continuantc and (participates inop some environmental system processc)))
has super-classes
data setc

clinical findingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000014

has super-classes
data itemc
has sub-classes
laboratory findingc

clinical phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000027

has super-classes
phenotypec
has sub-classes
acute respiratory illnessc

close individual places independently strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000286

has super-classes
place closure control strategyc

Clostridiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186801

has super-classes
Firmicutesc
has sub-classes
Clostridialesc

Clostridiaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_31979

has super-classes
Clostridialesc
has sub-classes
Clostridiumc

Clostridialesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186802

has super-classes
Clostridiac
has sub-classes
Clostridiaceaec, Peptostreptococcaceaec

Clostridioidesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1870884

has super-classes
Peptostreptococcaceaec
has sub-classes
Clostridioides difficilec

Clostridioides difficilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1496

has super-classes
Clostridioidesc

Clostridiumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1485

has super-classes
Clostridiaceaec
has sub-classes
Clostridium botulinumc, Clostridium tetanic

Clostridium botulinumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1491

has super-classes
Clostridiumc

Clostridium tetanic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1513

has super-classes
Clostridiumc

closure periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000435

Coccidiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5796

has super-classes
Conoidasidac
has sub-classes
Eucoccidioridac

Coccidioidesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5500

has super-classes
Onygenales incertae sedisc
has sub-classes
Coccidioides immitisc, Coccidioides posadasiic

Coccidioides immitisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5501

has super-classes
Coccidioidesc

Coccidioides posadasiic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_199306

has super-classes
Coccidioidesc

code setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020020

Contributors :
Alan Ruttenberg
Clint Dowland
Matt Diller
Sarah Bost
William R. Hogan
Code sets might include non-entities/things (e.g. missing thumbs).
has super-classes
information content entityc
has partop some identifierc
has sub-classes
centrally registered identifier registryc

Coelurosauriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_436492

has super-classes
Theropodac
has sub-classes
Avesc

collection of humansc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000023

has super-classes
aggregate of objectual organismsc
has memberop only Homo sapiensc
has sub-classes
hospital patient populationc, school student populationc

collection of organisms of the same speciesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000018

has super-classes
PCO:collection of organismsc
has sub-classes
populationc

colonizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000330

Primary use case is colonization of humans, animals with Staph aureus, but it also covers bacteriuria, transient bactermia, and normal gut flora.
is equivalent to
reproductionc and (occurs inop some (not (tissuec)) and (part ofop some organismc))
has super-classes
reproductionc
occurs inop some (not (tissuec)) and (part ofop some organismc)

colonization acquisitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000332

the host organism was not colonized wtih the pathogen prior to the colonization acquisition
has super-classes
entry into hostc

colonization durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000490

has super-classes
durationc

communicabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000623

The disposition is realized in a direct, horizontal transmission process between members of the same Species.
is equivalent to
infectious dispositionc and (is realized byop only processc and (has partop some establishment of localization in hostc) and (has partop some appearance of disorderc) and (has partop some horizontal pathogen transmission processc))
has super-classes
infectious dispositionc
is disjoint with
opportunistic infectious dispositionc, primary infectious dispositionc, zoonotic dispositionc, reverse zoonotic dispositionc

communityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000094

Authors :
William R. Hogan
has super-classes
object aggregatec
object aggregatec and (has memberop some populationc) and (has memberop only populationc)

community transmission multiplierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000288

has super-classes
epidemic simulator action specificationc

compartment model population and environment censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000199

The Apollo XSD allows us to specify counts of certain subpopulations and abiotic ecosystem elements for a compartmental model (vs. specifying each individual in the population as in agent model population and environment census).

compartmental disease transmission modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000303

has super-classes
disease transmission modelc
has sub-classes
Susceptible-Exposed-Infectious-Recovered modelc, Susceptible-Infected-Resistant modelc, Susceptible-Infected-Susceptible modelc

compiled software codec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000525

has super-classes
softwarec

compiling softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000524

It's compiling "software" (scare quotes) and not "source code" because you can compile Java bytecode to machine code, and Java bytecode is not technically "source code". Compiling source code would be a subclass of this class (as would compiling Java bytecode, etc.).
has super-classes
software developmentc
(has_specified_inputop some softwarec or source code modulec) and (has_specified_outputop some softwarec)

complete simulator identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000054

MB: I am not 100% happy with the elucidation. Can't we just say that this is the full identifier identifying the simulator with both its name and its version number?
is equivalent to
identifierc and (denotesop some epidemic modelc)
has super-classes
identifierc
denotesop some epidemic modelc

complete software identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000106

is equivalent to
identifierc and (denotesop exactly 1 software applicationc)
has super-classes
identifierc
denotesop some software applicationc

complete software license identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000536

has super-classes
identifierc

computational modeling toolkitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000565

has super-classes
software applicationc

computerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0400107

has super-classes
devicec
has sub-classes
computer clusterc

computer clusterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001092

has super-classes
computerc

conclusion sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000615

has super-classes
document partc
has partop some conclusion textual entityc

conclusion textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000144

has super-classes
textual entityc

conditional probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000529

has super-classes
probabilityc
has sub-classes
probability of infection over timec

conditional probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000245

has super-classes
probability distributionc

conditional specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000001

has super-classes
directive information entityc
has sub-classes
heterogenous carrying capacityc, reactive control strategy testc, rulec, time triggerc

confidence intervalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000422

has super-classes
data itemc

conflict of interest sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000616

has super-classes
document partc
has partop some conflict of interest textual entityc

conflict of interest textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000617

has super-classes
textual entityc

Conoidasidac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1280412

has super-classes
Apicomplexac
has sub-classes
Coccidiac

consent sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000618

has super-classes
document partc
has partop some consent textual entityc

consent textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000619

has super-classes
textual entityc

contact definitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000408

has super-classes
information content entityc

contact isolation control measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000489

has super-classes
case isolation control strategyc

contact tracingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000550

has super-classes
infectious disease control strategyc

contacted organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000407

is equivalent to
organismc and (bearer ofop some potentially infectious contact rolec)
has super-classes
organismc
bearer ofop some potentially infectious contact rolec

contagious organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000190

is equivalent to
host organismc and (bearer ofop some contagiousnessc)
has super-classes
host organismc
bearer ofop some contagiousnessc

contagious populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000156

has super-classes
host populationc

contagiousnessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000182

has super-classes
dispositionc

container reduction vector control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000392

has super-classes
vector control strategyc

contaminated abiotic thingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000571

has super-classes
abiotic ecosystem elementc

contaminated thingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000166

A contaminated thing is an entity that contains a pathogen (either internal to itself or on its surface) that is not undergoing an infection.
is equivalent to
independent continuantc and (location ofop some pathogenc and (not (participates inop some infectionc)))
has super-classes
independent continuantc
location ofop some pathogenc and (not (participates inop some infectionc))

contaminated thing censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000201

has super-classes
censusc

contaminationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000186

the preferred term is biological contamination to distinguish from things like radiological contamination, contamination of the Gulf of Mexico with oil, the contamination of air with pollution, etc.
is equivalent to
(reproductionc and (has participantop some pathogenc) and (has participantop some material entityc and (not (organismc)))) or (biological processc and (has participantop some pathogenc) and (has participantop some material entityc))
has super-classes
biological processc
has sub-classes
contamination acquisitionc

contamination acquisitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000167

is equivalent to
biological processc and (has inputop some pathogenc) and (has inputop some not (contaminated thingc)) and (has outputop some contaminated thingc)
has super-classes
contaminationc
entry into hostc
has inputop some pathogenc
has inputop some not (contaminated thingc)
has outputop some contaminated thingc

contamination period durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000505

has super-classes
durationc

contamination probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000262

Authors :
William R. Hogan
has super-classes
probabilityc

contiguous island land massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000357

It cannot be a part of the island, for example, that is below water.
has super-classes
subcontinental land massc

contiguous land massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000335

per the definition of 'contiguous' of "being in actual contact : touching along a boundary or at a point", these land masses share boundaries with other land masses that are part of the same continent, and thus are not surrounded by water like an island. At some point, we need an 'adjacent to' relation if BFO doesn't provide it. One question is whether this class encompasses fiat parts of islands.
has super-classes
subcontinental land massc

continentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000374

has super-classes
land massc

continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000002

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
entityc
part ofop only continuantc
has sub-classes
characteristicc, generically dependent continuantc, independent continuantc
is in domain of
causal relation between entitiesop, causally influencesop, participates inop
is in range of
causal relation between entitiesop, causally influencesop, has participantop
is disjoint with
occurrentc

continuant fiat boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000140

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
immaterial entityc
has sub-classes
one-dimensional continuant fiat boundaryc, two-dimensional continuant fiat boundaryc, zero-dimensional continuant fiat boundaryc
is disjoint with
spatial regionc, spatial regionc, sitec

continuous nonparametric probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000253

has super-classes
non-parametric distributionc

continuous parametric probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000251

has super-classes
parametric probability distributionc
has sub-classes
Weibull Distributionc, beta distributionc, continuous uniform distributionc, gamma distributionc, log normal distributionc, normal distributionc, triangular distributionc, uniform distributionc

continuous uniform distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000257

has super-classes
continuous parametric probability distributionc

contour plotc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000057

has super-classes
graphc

contraindicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OAE_0000055

has super-classes
dispositionc
has sub-classes
treatment contraindicationc, vaccine contraindicationc

control strategy censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000604

Date :
16T16:43:04Z/03/2021
Authors :
http://orcid.org/0000-0002-9881-1017
is equivalent to
censusc and (is aboutop some infectious disease control strategyc)
has super-classes
censusc
is aboutop some infectious disease control strategyc
has sub-classes
school closure control strategy censusc, vaccination control strategy censusc

control strategy compliancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000139

the class restriction can be made more precise AH
has super-classes
measurement datumc and (is aboutop some populationc and (participates inop some infectious disease control strategy executionc))

control strategy dose schedulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000084

has super-classes
individual treatment control strategy action specificationc
part ofop some infectious disease control strategyc
has sub-classes
vaccination dose schedulec

control strategy inventory censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000189

has super-classes
censusc
has sub-classes
census of vaccination suppliesc

control strategy reactive endpoint fractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000103

has super-classes
rulec
part ofop some infectious disease control strategyc
has sub-classes
vaccination reactive end point fractionc

control strategy reactive start time informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000011

control strategy response delayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000133

has super-classes
measurement datumc

control strategy stand-down delayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000263

Authors :
William R. Hogan
has super-classes
measurement datumc

control strategy start time informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000208

has super-classes
information content entityc

control strategy stop time informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000260

Authors :
William R. Hogan
has super-classes
information content entityc

control strategy target facilitiesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000126

has super-classes
facilityc

control strategy target population fractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000128

a specification of a population that a control strategy applies to. It is intended to apply to a real population, so I don’t know whether you would consider it a simulated thing. I don’t.
has super-classes
infectious disease control objective specificationc

control strategy target populations and prioritizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000127

has super-classes
TODOc

copyright licensec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000798

Can be for any creative work including fiction. But the license itself is an ICE, and refers to real claims and obligations.
has super-classes
documentc
has sub-classes
software licensec

copyright sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000330

has super-classes
document partc

Coronaviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11118

has super-classes
Nidoviralesc
has sub-classes
Coronavirinaec

Coronavirinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_693995

has super-classes
Coronaviridaec
has sub-classes
Alphacoronavirusc, Betacoronavirusc

Corynebacteriaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1653

has super-classes
Corynebacterialesc
has sub-classes
Corynebacteriumc

Corynebacterialesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_85007

has super-classes
Actinobacteria <class>c
has sub-classes
Corynebacteriaceaec, Mycobacteriaceaec

Corynebacteriumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1716

has super-classes
Corynebacteriaceaec
has sub-classes
Corynebacterium diphtheriaec

Corynebacterium diphtheriaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1717

has super-classes
Corynebacteriumc

Coturnixc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9090

has super-classes
Perdicinaec
has sub-classes
Coturnix japonicac

Coturnix japonicac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_93934

has super-classes
Coturnixc

countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000032

is equivalent to
data itemc and (is_specified_output_ofop some countingc)
has super-classes
measurement datumc
is_specified_output_ofop some countingc
has sub-classes
count of events occurring in a populationc, number of doses in a treatment coursec, population countc, study group population sizec, vaccine valencec

count of cases in an epidemicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000498

has super-classes
count of disease casesc
has sub-classes
cumulative epidemic case countc, incident epidemic case countc

count of contacted populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000088

has super-classes
population countc

count of contagious populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000098

has super-classes
population countc

count of deaths in a populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000625

has super-classes
count of events occurring in a populationc
has sub-classes
cumulative death countc, incident death countc

count of disease casesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000497

has super-classes
population countc
has sub-classes
count of cases in an epidemicc, cumulative case countc, incident case countc

count of events occurring in a populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000624

As the population is typically geographically defined (among other ways), the count is most often constrained to particular location in addition to a given time.
has super-classes
countc
is aboutop some processc and (has participantop some member ofop some populationc)
has sub-classes
count of deaths in a populationc, count of hospital stays in a populationc, count of infections in a populationc, count of vaccinations in a populationc

count of hospital stays in a populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000627

has super-classes
count of events occurring in a populationc
is aboutop some hospitalizationc and (has participantop some member ofop some populationc)
has sub-classes
cumulative hospitalization countc, incident hospitalization countc

count of infections in a populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000628

has super-classes
count of events occurring in a populationc
is aboutop some infectionc and (has participantop some member ofop some populationc)
has sub-classes
cumulative infection countc, incident infection countc

count of resistant populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000099

has super-classes
population countc

count of simulated contagious populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000020

has super-classes
population countc

count of simulated exposed populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000019

has super-classes
population countc

count of simulated populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000022

MW: I know this causes problems with our set-theoretic definition. Unfortunately the compartmental models produce fractional counts at each of their time steps, including the final step. Any ideas? I’ve considered and rejected allowing individual organisms to be fractional. Perhaps if we just replace the term “cardinality” in the definition with ‘computed size’
has super-classes
population countc and (is aboutop some simulated populationc)

count of simulated resistant populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000021

has super-classes
population countc

count of simulated susceptible populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000018

has super-classes
population countc

count of susceptible populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000087

has super-classes
population countc

count of vaccinations in a populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000626

has super-classes
count of events occurring in a populationc
is aboutop some vaccinationc and (has participantop some member ofop some populationc)
has sub-classes
cumulative vaccination countc, incident vaccination countc

countingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000033

is equivalent to
planned processc and (has_specified_outputop some countc)
has super-classes
planned processc
has_specified_outputop some countc

Coxiella <Bacteria>c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_776

has super-classes
Coxiellaceaec
has sub-classes
Coxiella burnetiic

Coxiella burnetiic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_777

has super-classes
Coxiella <Bacteria>c

Coxiellaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_118968

has super-classes
Legionellalesc
has sub-classes
Coxiella <Bacteria>c

Coxsackievirus A16c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_31704

has super-classes
Enterovirus Ac

Craniatac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_89593

has super-classes
Chordatac
has sub-classes
Vertebratac

creating a copyright licensec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000797

Note: for less than 24 hours, this class was a bit more specific to software licenses, but it did not have the equivalent class axiom during that time.
is equivalent to
planned processc and (has_specified_outputop some copyright licensec)
has super-classes
planned processc
has_specified_outputop some copyright licensec

Crimean-Congo hemorrhagic fever orthonairovirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1980519

has super-classes
Orthonairovirusc

Cryptosporidiidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_35082

has super-classes
Eimeriorinac
has sub-classes
Cryptosporidiumc

Cryptosporidiumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5806

has super-classes
Cryptosporidiidaec
has sub-classes
Cryptosporidium hominisc, Cryptosporidium parvumc

Cryptosporidium hominisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_237895

has super-classes
Cryptosporidiumc

Cryptosporidium parvumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5807

has super-classes
Cryptosporidiumc

Culex <genus>c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7174

has super-classes
Culicinic
has sub-classes
Culex <subgenus>c

Culex <subgenus>c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_53527

has super-classes
Culex <genus>c
has sub-classes
Culex pipiens complexc

Culex pipiens complexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_518105

has super-classes
Culex <subgenus>c
has sub-classes
Culex quinquefasciatusc

Culex quinquefasciatusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7176

has super-classes
Culex pipiens complexc

Culicidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7157

has super-classes
Culicoideac
has sub-classes
Anophelinaec, Culicinaec

Culicinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_43817

has super-classes
Culicidaec
has sub-classes
Aedinic, Culicinic

Culicinic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_53550

has super-classes
Culicinaec
has sub-classes
Culex <genus>c

Culicoideac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_41827

has super-classes
Culicomorphac
has sub-classes
Culicidaec

Culicomorphac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_43786

has super-classes
Nematocerac
has sub-classes
Culicoideac

cumulative case countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000648

The reference interval is usually relative to (i.e., occupied by) a major event like an epidemic, or it is a specific calendar-defined interval like a given calendar year or a set of consecutive "epidemiological weeks" as defined by CDC or another national or subnational public health organization.
has super-classes
count of disease casesc
has sub-classes
cumulative epidemic case countc

cumulative death countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000646

The reference interval is usually relative to (i.e., occupied by) a major event like an epidemic, or it is a specific calendar-defined interval like a given calendar year or a set of consecutive "epidemiological weeks" as defined by CDC or another national or subnational public health organization.
has super-classes
count of deaths in a populationc
has sub-classes
cumulative epidemic death countc

cumulative epidemic case countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000622

The count is also nearly always geographically localized, for example, the case count for the state of Pennsylvania or the case count for Waukesha County, Wisconsin.
has super-classes
count of cases in an epidemicc
cumulative case countc

cumulative epidemic death countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000631

has super-classes
cumulative death countc

cumulative epidemic hospitalization countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000633

has super-classes
cumulative hospitalization countc

cumulative epidemic infection countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000629

has super-classes
cumulative infection countc

cumulative epidemic vaccination countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000635

has super-classes
cumulative vaccination countc

cumulative hospitalization countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000644

The reference interval is usually relative to (i.e., occupied by) a major event like an epidemic, or it is a specific calendar-defined interval like a given calendar year or a set of consecutive "epidemiological weeks" as defined by CDC or another national or subnational public health organization.
has super-classes
count of hospital stays in a populationc
has sub-classes
cumulative epidemic hospitalization countc

cumulative infection countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000642

The reference interval is usually relative to (i.e., occupied by) a major event like an epidemic, or it is a specific calendar-defined interval like a given calendar year or a set of consecutive "epidemiological weeks" as defined by CDC or another national or subnational public health organization.
has super-classes
count of infections in a populationc
has sub-classes
cumulative epidemic infection countc

cumulative vaccination countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000640

The reference interval is usually relative to (i.e., occupied by) a major event like an epidemic or vaccination campaign, or it is a specific calendar-defined interval like a given calendar year or a set of consecutive "epidemiological weeks" as defined by CDC or another national or subnational public health organization.
has super-classes
count of vaccinations in a populationc
has sub-classes
cumulative epidemic vaccination countc

curation status specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000078

is equivalent to
{ example to be eventually removed , metadata complete , organizational term , ready for release , metadata incomplete , uncurated , pending final vetting , to be replaced with external ontology term , requires discussion }
has super-classes
data about an ontology partc
has members
example to be eventually removedni, metadata completeni, metadata incompleteni, organizational termni, pending final vettingni, ready for releaseni, requires discussionni, to be replaced with external ontology termni, uncuratedni

curation subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000007

has super-classes
subset ontology modulec

cut-off point specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000481

has super-classes
action specificationc

Cyclosporac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_44417

has super-classes
Eimeriidaec
has sub-classes
Cyclospora cayetanensisc

Cyclospora cayetanensisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_88456

has super-classes
Cyclosporac

data about an ontology partc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000102

has super-classes
data itemc
has sub-classes
curation status specificationc, denotator typec, obsolescence reason specificationc, ontology modulec, subsetc

data encodingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000227

has super-classes
documentingc

data format converterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000562

has super-classes
software applicationc

data format specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000098

has super-classes
directive information entityc

data format validatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000597

has super-classes
software applicationc

data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000027

has super-classes
information content entityc
has sub-classes
ascertainment fractionc, average valuec, cartesian spatial coordinate datumc, center valuec, clinical findingc, confidence intervalc, data about an ontology partc, data setc, employment status data itemc, epidemic thresholdc, human mobility data itemc, infection state data itemc, maximum valuec, measurement datumc, minimum valuec, probabilityc, ratio of outdoor to indoor ovisitesc, reactive control strategy thresholdc, setting datumc, social interaction data itemc, standard deviationc, total fatal disease casesc, vaccination efficacy inferredc, variablec

data item extraction from journal articlec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000443

has super-classes
planned processc
has_specified_inputop some journal articlec
has_specified_outputop some data itemc

data item labelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000009

has super-classes
information content entityc
has sub-classes
measurement unit labelc

data parsingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000566

has super-classes
data transformationc
has_specified_inputop some data setc

data representational modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000658

has super-classes
directive information entityc
has sub-classes
life stages with duration and mortalityc, mean median minimum maximum summary statistics data structurec, mean with confidence intervalc, mean with standard deviationc, transmission treec

data servicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001530

Information content entity was used as specified input and output since it was more appropriate then data item or dataset.
is equivalent to
servicec and (achieves_planned_objectiveop some data service softwarec or (is_specified_output_ofop some compiling softwarec and (has_specified_inputop some data service softwarec)))
has super-classes
servicec
achieves_planned_objectiveop some data service softwarec or (is_specified_output_ofop some compiling softwarec and (has_specified_inputop some data service softwarec))

data service softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000799

has super-classes
software applicationc

data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000100

has super-classes
data itemc
has sub-classes
abiotic ecosystem data setc, age data in age brackets data setc, case series data setc, climate data setc, disease surveillance datac, epidemic data setc, genomic datac, hospital stay datasetc, human daily movement data setc, infection acquisition datasetc, infection case listc, infection case recordc, infectious disease scenarioc, mortality datac, potentially infectious contact data setc, source code repositoryc, synthetic ecosystem data setc, time sampled measurement data setc, weather data setc

data transformationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200000

has super-classes
planned processc
achieves_planned_objectiveop some data transformation objectivec
has sub-classes
averaging data transformationc, data parsingc, one-way sensitivity analysis of a continuous variablec

data transformation objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200166

has super-classes
objective specificationc
has sub-classes
averaging objectivec

data visualization objective specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000588

has super-classes
objective specificationc

data visualizerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000564

has super-classes
software applicationc

database extract, transform, and load processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000650

is defined by
https://github.com/information-artifact-ontology/IAO
has super-classes
planned processc
has_specified_inputop some information content entityc
has_specified_outputop some information content entityc

dataset creatingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000796

is equivalent to
planned processc and (has_specified_outputop some data setc)
has super-classes
planned processc
has_specified_outputop some data setc
has sub-classes
agent-level ecosystem data generationc

datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000429

has super-classes
name of temporal regionc

de jure sovereign statec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000797

Sovereignty, in the legal sense, is acquired by a state upon receiving recognition by the international community. However, without specifying that this recognition can only be acquired through full membership to the United Nations, a non-arbitrary standard would be difficult, if not impossible, to come by since there are a good many sovereign states whose sovereignty is not explicitly recognized by one or more states. Given that the de facto criteria for sovereignty must be achieved prior to membership to the UN General Assembly and that every member therein is considered to be "international recognized," full membership to the UN is a sufficient criterion for de jure sovereignty. This can be further justified by noting that, in cases where UN member X claims to not recognize the sovereign status of UN member Y, the diplomatic and political behavior of member X towards Y nevertheless tacitly implies that it recognizes Y's sovereignty.
has super-classes
sovereign statec

decolonization control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000333

typically the pathogen is a bacterium
has super-classes
individual treatment control strategyc

delay from symptoms to treatmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000258

has super-classes
durationc

delta/epsilon subdivisionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_68525

has super-classes
Proteobacteriac
has sub-classes
Epsilonproteobacteriac

Deltavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_39759

has super-classes
Virusc
has sub-classes
Hepatitis delta virusc

dendrogramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000183

has super-classes
graphc

dengue diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_12205

has super-classes
infectious diseasec
has sub-classes
dengue hemorrhagic feverc

dengue hemorrhagic feverc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_12206

has super-classes
dengue diseasec

Dengue virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12637

has super-classes
Dengue virus groupc
has sub-classes
Dengue virus 1c, Dengue virus 2c, Dengue virus 3c, Dengue virus 4c

Dengue virus 1c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11053

has super-classes
Dengue virusc

Dengue virus 2c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11060

has super-classes
Dengue virusc

Dengue virus 3c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11069

has super-classes
Dengue virusc

Dengue virus 4c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11070

has super-classes
Dengue virusc

Dengue virus groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11052

has super-classes
Flavivirusc
has sub-classes
Dengue virusc

denotator typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000409

is equivalent to
{ universal , defined class , named class expression }
has super-classes
data about an ontology partc
has members
defined classni, named class expressionni, universalni

density plotc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000079

has super-classes
graphc

deontic declarationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021009

has super-classes
social actc

deprecated discrete probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000095

has super-classes
Obsolete Classc

deprecated homeostasisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000370

deprecated infection case countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000399

deprecated log normal distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000079

has super-classes
Obsolete Classc

descriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000476

has super-classes
textual entityc

descriptive data sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000701

has super-classes
document partc

Deuterostomiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33511

has super-classes
Bilateriac
has sub-classes
Chordatac

devicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000968

would include reagents
has super-classes
processed materialc
has sub-classes
computerc

diagramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000309

has super-classes
figurec
has sub-classes
graphc

Dicondyliac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_85512

has super-classes
Insectac
has sub-classes
Pterygotac

Digeneac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6179

has super-classes
Trematodac
has sub-classes
Strigeididac

digital curationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302914

has super-classes
documentingc

digital object identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002110

has super-classes
identifierc

Dikaryac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_451864

has super-classes
Fungic
has sub-classes
Ascomycotac

dimensionless unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000186

has super-classes
measurement unit labelc
has sub-classes
ratioc

Dinosauriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_436486

has super-classes
Archosauriac
has sub-classes
Saurischiac

Diplomonadidac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5738

has super-classes
Fornicatac
has sub-classes
Hexamitidaec

Dipnotetrapodomorphac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1338369

has super-classes
Sarcopterygiic
has sub-classes
Tetrapodac

Dipterac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7147

has super-classes
Endopterygotac
has sub-classes
Nematocerac

directive information entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000033

has super-classes
information content entityc
is aboutop some realizablec
has sub-classes
action specificationc, ascertainment delayc, conditional specificationc, data format specificationc, data representational modelc, objective specificationc, plan specificationc, source code modulec

discrete nonparametric probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000252

has super-classes
non-parametric distributionc

discrete parametric probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000250

has super-classes
parametric probability distributionc

discrete probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000216

has super-classes
probability distributionc

discussion section of a publication about an investigationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000319

has super-classes
document partc

diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000031

has super-classes
dispositionc
has sub-classes
infectious diseasec
is disjoint with
pathogenic dispositionc, immunocompetencec

disease case identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000510

has super-classes
identifierc

disease coursec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000063

has super-classes
processc

disease identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000598

Date :
16T16:01:41Z/03/2021
Authors :
http://orcid.org/0000-0002-9881-1017
Contributors :
Mathias Brochhausen
is equivalent to
identifierc and (denotesop some diseasec)
has super-classes
identifierc
denotesop some diseasec
has sub-classes
disease unique identifierc

disease outcomec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000204

The infectious disease type in the XSD has a disease outcome element, which specifies whether someone became symptomatic, was hospitalized, etc. All of these outcomes require some process to occur. For sequalae of disease, it is that the realization of the disease is an etiological process that creates some other disorder. For example, fever is often occurs because of high levels of certain interleukins (which is a disorder). So I am comfortable with disease outcome as a process. It is also consistent with the probabilitistic information that will go with it, as a future probability is almost always (if not always) the probability of some event occurring (e.g., coin turning up heads, raining, developing a disease),
has super-classes
processc
(part ofop some disease coursec) or (immediately preceded byop some disease coursec)
has sub-classes
becoming asymptomaticc, becoming severely symptomaticc, becoming symptomaticc

disease outcome with probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000428

has super-classes
calculated datumc

disease state designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001293

has super-classes
study designc

disease surveillancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000545

has super-classes
planned processc
has sub-classes
wastewater disease surveillancec

disease surveillance capabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000266

Specifies location, pathogen, host taxon, caseDefinition, sensitivity, specificity, and time delay of case detection
has super-classes
dispositionc

disease surveillance datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000554

has super-classes
data setc
is_specified_output_ofop some disease surveillancec
has sub-classes
wastewater surveillance data setc

disease surveillance objective specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000541

has super-classes
objective specificationc

disease surveillance trigger definitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000269

has super-classes
infectious disease control strategy trigger definitionc

disease transmission modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000174

has super-classes
algorithmc
has sub-classes
agent-based disease transmission modelc, compartmental disease transmission modelc, epidemic modelc, metapopulation disease transmission modelc

disease transmission model identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000507

has super-classes
identifierc

disease transmission model softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000561

has super-classes
simulation software applicationc

disease transmission tree estimatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000555

has super-classes
software applicationc

disease unique identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000244

This class is different from its superclass, in that the identifier is non-redundant with other identifiers in its context (such as a coding system or terminology or ontology). The superclass admits of natural langugage names of diseases, whereas this one typically does not.
has super-classes
disease identifierc

disorderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000045

has super-classes
material entityc
is disjoint with
organismc

dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000016

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
realizablec
has sub-classes
contagiousnessc, contraindicationc, diseasec, disease surveillance capabilityc, disposition to become contaminated with a pathogenc, efficacyc, functionc, homeostasisc, immunocompetencec, infectious disease treatment efficacyc, infectiousnessc, pathogenic dispositionc, resistance to infectionc, susceptibilityc, treatment surveillance capabilityc
is in domain of
has basis inop
is in range of
has dispositionop
is disjoint with
rolec

disposition to become contaminated with a pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000144

is equivalent to
dispositionc and ((characteristic ofop some material entityc) and (is realized byop only contamination acquisitionc))
has super-classes
dispositionc
characteristic ofop some material entityc

distancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000040

has super-classes
physical qualityc

documentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000310

has super-classes
information content entityc
has sub-classes
copyright licensec, document in preparation for publicationc, news articlec, patentc, publicationc, reportc, source code repositoryc, websitec

document in preparation for publicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000445

has super-classes
documentc

document partc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000314

has super-classes
information content entityc
part ofop some documentc
has sub-classes
abbreviations sectionc, abstractc, acknowledgements sectionc, author contributions sectionc, author information sectionc, author listc, author summary sectionc, availability sectionc, case report sectionc, conclusion sectionc, conflict of interest sectionc, consent sectionc, copyright sectionc, descriptive data sectionc, discussion section of a publication about an investigationc, ethical approval sectionc, figures sectionc, footnotec, funding source declaration sectionc, future directions sectionc, genome announcement sectionc, institution listc, introduction to a publication about an investigationc, keywords sectionc, materials sectionc, methods sectionc, notes sectionc, patients sectionc, pre-publication history sectionc, references sectionc, related work sectionc, requirements sectionc, research participants sectionc, research settings sectionc, results sectionc, statistical analysis sectionc, study limitations sectionc, supplementary material to a documentc, tables sectionc

document titlec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000305

has super-classes
textual entityc
has sub-classes
running titlec

documentingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000572

has super-classes
planned processc
has_specified_inputop some information content entityc
has_specified_outputop some documentc
has sub-classes
data encodingc, digital curationc

Dorylaimiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1457286

has super-classes
Enopleac
has sub-classes
Trichocephalidac

dot plotc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000037

has super-classes
graphc

drug identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000461

has super-classes
identifierc

drug productc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DRON_00000005

Authors :
William Hogan
has super-classes
objectc

drug treatmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000318

is equivalent to
treatmentc and (has_specified_inputop some drug productc)
has super-classes
treatmentc
has_specified_inputop some drug productc
has sub-classes
antiviral treatmentc

drug treatment efficacyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000502

While we understand that 'drug efficacy' can have multiple interpretations, this class is specifically referring to drug efficacy in the context of clinical outcomes. As such, our definition excludes any mention of efficacy as it relates to pharmacodynamics.
has super-classes
efficacyc

dsDNA virus, no RNA stagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_35237

has super-classes
Virusc
has sub-classes
Herpesviralesc, Poxviridaec

dsRNA virusesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_35325

has super-classes
Virusc
has sub-classes
Reoviridaec

durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000243

has super-classes
time measurement datumc
is aboutop some one-dimensional temporal regionc and (has temporal occupantop some processc)
has sub-classes
antiviral efficacy delayc, colonization durationc, contamination period durationc, delay from symptoms to treatmentc, duration of treatment coursec, fixed durationc, fulminant period durationc, gonotrophic cycle durationc, infectious period durationc, latent period durationc, place closure periodc, prodromal period durationc, quarantine periodc, time between vector bitesc, time delay of treatment detectionc, time delay to case detectionc, time since time scale zeroc, uncertain durationc

duration of treatment coursec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000280

has super-classes
durationc
is aboutop some one-dimensional temporal regionc and (has temporal occupantop some treatmentc)

Eastern equine encephalitis virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11021

has super-classes
EEEV complexc

Ebolavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186536

has super-classes
Filoviridaec
has sub-classes
Bundibugyo ebolavirusc, Reston ebolavirusc, Sudan ebolavirusc, Tai Forest ebolavirusc, Zaire ebolavirusc

Ecdysozoac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1206794

has super-classes
Protostomiac
has sub-classes
Nematodac, Panarthropodac

ecosystemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000097

Authors :
William R. Hogan
has super-classes
material entityc

ectosymbiosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000337

It includes situations where one organism lives on the surface of the other organism.
is equivalent to
symbiosisc and (has participantop some organismc and (spatially disjoint fromop some organismc))
has super-classes
symbiosisc
has participantop some organismc and (spatially disjoint fromop some organismc)
has sub-classes
agonismc, amensalismc, antagonismc, ectosymbiotic commensalismc, ectosymbiotic mutualismc

ectosymbiotic commensalismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000348

is equivalent to
ectosymbiosisc and (not (realizesop some homeostasisc and (characteristic ofop some organismc))) and (has partop some bodily benefitc)
has super-classes
ectosymbiosisc
has partop some bodily benefitc
has sub-classes
facultative ectosymbiotic commensalismc, obligatory ectosymbiotic commensalismc

ectosymbiotic mutualismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000351

is equivalent to
ectosymbiosisc and (has partop some bodily benefitc) and (has partop only bodily benefitc)
has super-classes
ectosymbiosisc
has partop some bodily benefitc
has sub-classes
facultative ectosymbiotic mutualismc, obligatory ectosymbiotic mutualismc

ectosymbiotic parasitismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000342

Example: Temnocephala chilensis and various marine wildlife
is equivalent to
intimate agonismc and (has partop some bodily harmc and (not (has partop some life-death temporal boundaryc)))
has super-classes
intimate agonismc
has partop some bodily harmc and (not (has partop some life-death temporal boundaryc))
has sub-classes
facultative ectosymbiotic parasitismc, obligatory ectosymbiotic parasitismc

ectosymbiotic parasitoidismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000345

has super-classes
intimate agonismc
has sub-classes
facultative ectosymbiotic parasitoidismc, obligatory ectosymbiotic parasitoidismc

ED encounterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000101

has super-classes
health care encounterc

editors ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000002

has super-classes
ontology modulec

EEEV complexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_177873

has super-classes
Alphavirusc
has sub-classes
Eastern equine encephalitis virusc

effect size estimatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000085

has super-classes
measurement datumc
has sub-classes
relative riskc

efficacyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000454

We often say in natural language it is the efficacy of the triggering planned process such as vaccination. However, processes do not have properties such as roles, dispositions, functions, qualities in BFO. And this is also not a process profile, because it is not the process of a quality changing values (determinates) over time. Nevertheless, it is natural to classify efficacies based on the type of triggering process because that is what differentiates what happens when they are realized. For example, a vaccination efficacy will be realized through different processes than a quarantine efficacy. For individual treatments, the triggering process is a treatment (as defined by OGMS).
has super-classes
dispositionc
has sub-classes
drug treatment efficacyc

eggs per broodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000453

has super-classes
average valuec

Ehrlichiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_943

has super-classes
Anaplasmataceaec
has sub-classes
canis groupc

Ehrlichia chaffeensisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_945

has super-classes
canis groupc

Eimeriidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5799

has super-classes
Eimeriorinac
has sub-classes
Cyclosporac

Eimeriorinac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_423054

has super-classes
Eucoccidioridac
has sub-classes
Cryptosporidiidaec, Eimeriidaec

EL++ ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000020

has super-classes
ontology module subsetted by OWL profilec

email addressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000429

has super-classes
information content entityc

Embryophytac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_3193

has super-classes
Streptophytinac

employment status data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000570

If an individual is a member of the labor force, the criteria that this status is selected from includes whether they are in the armed forces, employed and working, employed but absent from work for a week, and unemployed. The criteria for those not in the labor force includes whether the individual is a houseworker, suffering from a physical impairment that prevents them from working, in school, or other miscellaneous reasons.
has super-classes
data itemc

endemicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000307

has super-classes
infection in ecosystemc

Endopterygotac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33392

has super-classes
Neopterac
has sub-classes
Dipterac

endosymbiosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000354

is equivalent to
symbiosisc and (has participantop some organismc and (located inop some organismc))
has super-classes
symbiosisc
has participantop some organismc and (located inop some organismc)
has sub-classes
endosymbiotic commensalismc, endosymbiotic mutualismc, endosymbiotic parasitismc, endosymbiotic parasitoidismc

endosymbiotic commensalismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000364

is equivalent to
endosymbiosisc and (not (realizesop some homeostasisc and (characteristic ofop some organismc))) and (has partop some bodily benefitc)
has super-classes
endosymbiosisc
has partop some bodily benefitc
has sub-classes
facultative endosymbiotic commensalismc, obligatory endosymbiotic commensalismc

endosymbiotic mutualismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000367

is equivalent to
endosymbiosisc and (has partop some bodily benefitc) and (has partop only bodily benefitc)
has super-classes
endosymbiosisc
has partop some bodily benefitc
has sub-classes
facultative endosymbiotic mutualismc, obligatory endosymbiotic mutualismc

endosymbiotic parasitismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000355

is equivalent to
endosymbiosisc and (has partop some bodily harmc and (not (has partop some life-death temporal boundaryc)))
has super-classes
endosymbiosisc
has partop some bodily harmc and (not (has partop some life-death temporal boundaryc))
has sub-classes
facultative endosymbiotic parasitismc, obligatory endosymbiotic parasitismc

endosymbiotic parasitoidismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000361

is equivalent to
endosymbiosisc and (has partop some bodily harmc and (has partop some life-death temporal boundaryc))
has super-classes
endosymbiosisc
has partop some bodily harmc and (has partop some life-death temporal boundaryc)
has sub-classes
facultative endosymbiotic parasitoidismc, obligatory endosymbiotic parasitoidismc

Enopleac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_119088

has super-classes
Nematodac
has sub-classes
Dorylaimiac

Entamoebac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5758

has super-classes
Entamoebidaec

Entamoebidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33084

has super-classes
Archamoebaec
has sub-classes
Entamoebac

Enterobacteralesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_91347

has super-classes
Gammaproteobacteriac
has sub-classes
Enterobacteriaceaec, Yersiniaceaec

Enterobacteriaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_543

has super-classes
Enterobacteralesc
has sub-classes
Escherichiac, Klebsiellac, Salmonellac, Shigellac

Enterovirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12059

has super-classes
Picornaviridaec
has sub-classes
Enterovirus Ac, Enterovirus Cc, Enterovirus Dc, Rhinovirus Ac

Enterovirus Ac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_138948

has super-classes
Enterovirusc
has sub-classes
Coxsackievirus A16c, Enterovirus A71c

Enterovirus A71c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_39054

has super-classes
Enterovirus Ac

Enterovirus Cc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_138950

has super-classes
Enterovirusc
has sub-classes
Human poliovirus 1c, Human poliovirus 3c

Enterovirus Dc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_138951

has super-classes
Enterovirusc
has sub-classes
Enterovirus D68c

Enterovirus D68c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_42789

has super-classes
Enterovirus Dc

entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000001

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
thingc
has sub-classes
TODOc, continuantc, occurrentc
is in domain of
denoted byop, instantiatesop
is in range of
denotesop, simulatesop

entry into hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044409

has super-classes
biological process involved in interaction with hostc
multi-organism processc
has sub-classes
colonization acquisitionc, contamination acquisitionc, infection acquisitionc, infection acquistion from self colonizationc

environmental conditionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000203

A condition defines a restricted range of a given quality or combination of qualities. If an environment class, E, has_condition C, then all qualities listed in C are restricted to the ranges defined in C in E. This is not intended as a logical conditional.
has super-classes
physical qualityc
has sub-classes
environmental variabilityc

environmental history designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001226

has super-classes
study designc

environmental materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00010483

Everything under this parent must be a mass noun. All subclasses are to be understood as being composed primarily of the named entity, rather than restricted to that entity. For example, "ENVO:water" is to be understood as "environmental material composed primarly of some CHEBI:water". This class is currently being aligned to the Basic Formal Ontology. Following this alignment, its definition and the definitions of its subclasses will be revised.
has super-classes
material entityc
has sub-classes
gaseous environmental materialc

environmental system processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_02500000

Should environmental feature become something more towards a disposition, the assert would be updated to something like "has participant (environmental system or (material entity and has disposition some environmental feature))". There are several issues surrounding the reconcilliation of environmental feature and environmental system, both theoretical and practical.
has super-classes
processc
has sub-classes
hydrological precipitation processc

environmental variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001081

This class is very general, but the nature of environmental variability is indeed quite variable. This class may be refined once we have more subclasses to consider.
has super-classes
environmental conditionc
has sub-classes
weatherc

epidemicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000298

An example of multiple host species is foot and mouth disease (such as the 2001 epidemic in the UK, see: http://www.sciencemag.org/content/292/5519/1155.long) and swine flu. The foot and mouth disease epidemic affected sheep, pigs, and cattle.
has super-classes
infection in ecosystemc

epidemic data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000560

is equivalent to
is aboutop some epidemicc
has super-classes
data setc
is aboutop some epidemicc

epidemic intervalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000400

has super-classes
one-dimensional temporal regionc

epidemic investigation designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000326

has super-classes
study designc

epidemic modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000001

has super-classes
disease transmission modelc

epidemic peak intensityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000577

has super-classes
calculated datumc

epidemic peak weekc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000576

has super-classes
scalar value specificationc

epidemic simulatingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000055

has super-classes
simulating of process of type Xc and (has participantop some epidemic modelc)

epidemic simulator action specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000793

has super-classes
action specificationc
has sub-classes
Wolbachia effect on mating probabilityc, carrying capacity per housec, clear Wolbachia upon vector migrationc, clear infection upon vector migrationc, community transmission multiplierc, household transmission multiplierc, linear distance travelled between ovipositsc, minimum eggs per oviposition sitec, reactive control measure operatorc, school transmission multiplierc, simulation run lengthc, simulation time step action specificationc, simulator configurationc, simulator time specificationc, workplace transmission multiplierc

epidemic start weekc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000575

has super-classes
scalar value specificationc

epidemic thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000531

has super-classes
data itemc

Epsilonproteobacteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_29547

has super-classes
delta/epsilon subdivisionsc
has sub-classes
Campylobacteralesc

Equidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9788

has super-classes
Perissodactylac
has sub-classes
Equusc

Equusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9789

has super-classes
Equidaec
has sub-classes
Equus <subgenus>c

Equus <subgenus>c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_35510

has super-classes
Equusc
has sub-classes
Equus caballusc

Equus caballusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9796

has super-classes
Equus <subgenus>c

Escherichiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_561

has super-classes
Enterobacteriaceaec
has sub-classes
Escherichia colic

Escherichia colic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_562

has super-classes
Escherichiac
has sub-classes
Escherichia coli O157c

Escherichia coli O157c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1045010

has super-classes
Escherichia colic

establishment of localizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0051234

has super-classes
biological processc
has sub-classes
establishment of localization in hostc

establishment of localization in hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000625

An organism begins bearing a particular host role as soon as the extended organism contains the relevant material entity, regardless of that entity's location in the extended organism. An establishment process is any process by which the entity reaches a location in the extended organism in which it can persist and continue its lifecycle. For example, an organism is host to a virus as soon as any part of the extended organism is occupied by virus particles. During an establishment process, virus particles enter host cells of the relevant type, and viral DNA is integrated into host DNA.
is equivalent to
occurs inop some hostc
has super-classes
establishment of localizationc
occurs inop some hostc

ethical approval sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000620

has super-classes
document partc
has partop some ethical approval textual entityc

ethical approval textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000621

has super-classes
textual entityc
is aboutop some study designc

Euarchontogliresc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_314146

has super-classes
Boreoeutheriac
has sub-classes
Primatesc

Eucoccidioridac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_75739

has super-classes
Coccidiac
has sub-classes
Eimeriorinac

Euglenozoac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33682

has super-classes
Eukaryotac
has sub-classes
Kinetoplastidac

Eukaryotac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2759

has super-classes
organismc
has sub-classes
Alveolatac, Amoebozoac, Euglenozoac, Fornicatac, Homo sapiensc, Mus musculusc, Opisthokontac, Viridiplantaec

Eumetazoac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6072

has super-classes
Metazoac
has sub-classes
Bilateriac

Eurotiomycetesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_147545

has super-classes
leotiomycetac
has sub-classes
Eurotiomycetidaec

Eurotiomycetidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_451871

has super-classes
Eurotiomycetesc
has sub-classes
Onygenalesc

Euteleostomic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_117571

has super-classes
Teleostomic
has sub-classes
Sarcopterygiic

Eutheriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9347

has super-classes
Theriac
has sub-classes
Boreoeutheriac

excess mortality datasetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000608

Often used during epidemics or pandemics to estimate the death toll.
has super-classes
mortality datac

exclusion subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000010

has super-classes
subset ontology modulec

exposed populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000154

is equivalent to
host populationc and (has memberop only host organismc and (not (bearer ofop some contagiousnessc)))
has super-classes
host populationc

extended organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000087

From OGMS: http://purl.obolibrary.org/obo/OGMS_0000087
has super-classes
object aggregatec

external import ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000011

has super-classes
import ontology modulec

facilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000062

is equivalent to
architectural structurec and (bearer ofop some functionc)
has super-classes
architectural structurec
is administered byop some organizationc
bearer ofop some functionc
has sub-classes
control strategy target facilitiesc, school facilityc

facility identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000508

has super-classes
identifierc
has sub-classes
healthcare facility identifierc

facility surveyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000026

has super-classes
planned processc

facultative ectosymbiotic commensalismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000349

Example: Ophiodromus pugettensis and Patiria miniata
is equivalent to
ectosymbiotic commensalismc and (realizesop some facultative rolec and (is realized byop some bodily benefitc) and (characteristic ofop some organismc))
has super-classes
ectosymbiotic commensalismc
realizesop some facultative rolec and (is realized byop some bodily benefitc) and (characteristic ofop some organismc)

facultative ectosymbiotic mutualismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000352

Example: ants that feed off of honeydew from aphids, and in turn protect the aphids
is equivalent to
ectosymbiotic mutualismc and (realizesop some facultative rolec and (is realized byop some bodily benefitc) and (characteristic ofop some organismc))
has super-classes
ectosymbiotic mutualismc
realizesop some facultative rolec and (is realized byop some bodily benefitc) and (characteristic ofop some organismc)

facultative ectosymbiotic parasitismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000343

Example: Armillaria (type of wood fungus) and trees
is equivalent to
ectosymbiotic parasitismc and (realizesop some facultative rolec and (is realized byop some bodily benefitc) and (characteristic ofop some organismc))
has super-classes
ectosymbiotic parasitismc
realizesop some facultative rolec and (is realized byop some bodily benefitc) and (characteristic ofop some organismc)

facultative ectosymbiotic parasitoidismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000346

Example: Pachycrepoideus dubius and Ceratitis capitata
has super-classes
ectosymbiotic parasitoidismc

facultative endosymbiotic commensalismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000365

Example: Malaria and mosquito vector
is equivalent to
endosymbiotic commensalismc and (realizesop some facultative rolec and (is realized byop some bodily benefitc) and (characteristic ofop some organismc))
has super-classes
endosymbiotic commensalismc
realizesop some facultative rolec and (is realized byop some bodily benefitc) and (characteristic ofop some organismc)

facultative endosymbiotic mutualismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000368

Example: Hamiltonella defensa and aphids
is equivalent to
endosymbiotic mutualismc and (realizesop some facultative rolec and (is realized byop some bodily benefitc) and (characteristic ofop some organismc))
has super-classes
endosymbiotic mutualismc
realizesop some facultative rolec and (is realized byop some bodily benefitc) and (characteristic ofop some organismc)

facultative endosymbiotic parasitismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000359

Example: Strongyloides stercoralis (roundworm) and humans
is equivalent to
endosymbiotic parasitismc and (realizesop some facultative rolec and (is realized byop some bodily benefitc) and (characteristic ofop some organismc))
has super-classes
endosymbiotic parasitismc
realizesop some facultative rolec and (is realized byop some bodily benefitc) and (characteristic ofop some organismc)

facultative endosymbiotic parasitoidismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000362

Example: Naegleria fowleri (brain-eating amoeba) and humans
is equivalent to
endosymbiotic parasitoidismc and (realizesop some facultative rolec and (is realized byop some bodily benefitc) and (characteristic ofop some organismc))
has super-classes
endosymbiotic parasitoidismc
realizesop some facultative rolec and (is realized byop some bodily benefitc) and (characteristic ofop some organismc)

facultative rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00002024

has super-classes
rolec

family namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020017

has super-classes
identifierc

femalec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000383

has super-classes
biological sexc

fiat objectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000024

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
material entityc
has sub-classes
atmospherec

figurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000308

has super-classes
information content entityc
has sub-classes
diagramc, imagec

figures sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000622

has super-classes
document partc
has partop some figurec

Filoviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11266

has super-classes
Mononegaviralesc
has sub-classes
Ebolavirusc, Marburgvirusc

Firmicutesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1239

has super-classes
Terrabacteria groupc
has sub-classes
Bacillic, Clostridiac

fixed control strategy start time specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000101

has super-classes
infectious disease control strategy action specificationc

fixed durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000384

has super-classes
durationc

Flaviviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11050

has super-classes
ssRNA positive-strand viruses, no DNA stagec
has sub-classes
Flavivirusc, Hepacivirusc

Flavivirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11051

has super-classes
Flaviviridaec
has sub-classes
Dengue virus groupc, Japanese encephalitis virus groupc, Spondweni virus groupc, Yellow fever virus groupc, tick-borne encephalitis virus groupc

Foot-and-mouth disease virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12110

has super-classes
Aphthovirusc

footnotec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000325

has super-classes
document partc
is aboutop some document partc

Fornicatac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_207245

has super-classes
Eukaryotac
has sub-classes
Diplomonadidac

fractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000191

has super-classes
ratioc

fraction of contaminated thingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000380

has super-classes
measurement datumc

fraction of vector adults affectedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000437

has super-classes
measurement datumc

fraction reduction of eggsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000438

has super-classes
measurement datumc

fraction reduction of larvaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000439

has super-classes
measurement datumc

Francisellac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_262

has super-classes
Francisellaceaec
has sub-classes
Francisella tularensisc

Francisella tularensisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_263

has super-classes
Francisellac

Francisellaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_34064

has super-classes
Thiotrichalesc
has sub-classes
Francisellac

fulminant periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000456

Although it is often or even typically preceded by a prodromal period, it is not always the case. Therefore "immediately preceded by some prodromal period" cannot be a necessary condition.
has super-classes
processc

fulminant period durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000483

has super-classes
durationc

functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000034

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
dispositionc
has sub-classes
health care functionc, mechanical flight functionc, school functionc, vaccine functionc
is in domain of
function ofop
is in range of
has functionop

funding source declaration sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000623

has super-classes
document partc
has partop some funding source declaration textual entityc

funding source declaration textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000624

has super-classes
textual entityc

Fungic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_4751

has super-classes
Opisthokontac
has sub-classes
Dikaryac

future directions sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000625

has super-classes
document partc
has partop some future directions textual entityc

future directions textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000626

has super-classes
textual entityc

Galliformesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_8976

has super-classes
Galloanseraec
has sub-classes
Phasianidaec

Galloanseraec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1549675

has super-classes
Neognathaec
has sub-classes
Anseriformesc, Galliformesc

Gallusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9030

has super-classes
Phasianinaec
has sub-classes
Gallus gallusc

Gallus gallusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9031

has super-classes
Gallusc

gamma distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000255

has super-classes
continuous parametric probability distributionc

Gammaproteobacteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1236

has super-classes
Proteobacteriac
has sub-classes
Enterobacteralesc, Legionellalesc, Pasteurellalesc, Pseudomonadalesc, Thiotrichalesc, Vibrionalesc

gaseous environmental materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000797

has super-classes
environmental materialc
has sub-classes
water vapourc

gene product or complex activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0003674

Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex.
has super-classes
processc
has sub-classes
kinase activityc
is disjoint with
biological processc

generated ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000014

has super-classes
ontology modulec
has sub-classes
template generated ontology modulec

generically dependent continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000031

is defined by
http://purl.obolibrary.org/obo/bfo.owl
A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.
has super-classes
continuantc
part ofop only generically dependent continuantc
has sub-classes
information content entityc, purely intentional entityc
is in domain of
generically depends onop, is concretized asop, is expressed asdp
is in range of
concretizesop, is carrier ofop
is disjoint with
independent continuantc, characteristicc, independent continuantc, characteristicc

genome announcement sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000627

has super-classes
document partc
has partop some genome announcement textual entityc

genome announcement textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000628

has super-classes
textual entityc

genomic datac back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/efo/EFO_0004600

has super-classes
data setc
is aboutop some organismc

geodetic coordinate measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000787

latitude and longitude are key subtypes
is equivalent to
measurement datumc and (is_specified_output_ofop some processc and (has_specified_inputop some geodetic datumc)) and (has value specificationop some value specificationc and (has measurement unit labelop value angular degree))
has super-classes
measurement datumc
is_specified_output_ofop some processc and (has_specified_inputop some geodetic datumc)
has value specificationop some value specificationc and (has measurement unit labelop value angular degree)
has sub-classes
latitude coordinate measurement datumc, longitude coordinate measurement datumc

geodetic datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000788

Every latitude and longitude measurement is with respect to a geodetic datum. Most common ones in use are NAD83 and WGS84.
has super-classes
information content entityc
has sub-classes
latitude and longitude coordinate pairc

geographical entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000370

Includes atmosphere, crust, geographical regions (e.g., the geographical region over which the state of Florida has jurisdiction), bodies of water, mountains, etc. Generally, an individual organism is a distinct object that is not a part of the Earth, although this requires more thought. But the intent is definitely for this class to NOT subsume organism universally. Human beings are contained within, but not part of, the Earth, for example.
has super-classes
material entityc
has sub-classes
geographical featurec, geographical regionc

geographical featurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000371

has super-classes
geographical entityc
has sub-classes
atmosphere of geographical regionc

geographical movement of organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000480

has super-classes
behaviorc
has sub-classes
human travelc

geographical regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000372

has super-classes
geographical entityc
has sub-classes
body of waterc, land massc, location of sampling processc

geopoli organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000391

has super-classes
organizationc
has sub-classes
intergovernmental organizationc, nongovernmental organizationc, private governance organizationc

geopolitical dependencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000006

Typically, the common feature is that the dependency does not conduct foreign affairs, and relegates this authority to the sovereign state. But otherwise, it is largely or completely autonomous relative to the administrative subdivisions. Examples include Puerto Rico (U.S.), Guam (U.S.), Greenland (Denmark), French Polynesia (France), and Falkland Islands (United Kingdom).
has super-classes
subnational entityc

geopolitical entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000001

In some cases, geopolitical entities possess uninhabited geographical regions. However, it is that case that it controls the movement of people in and out of those regions, and its laws apply to those regions.
has super-classes
Obsolete Classc

Giardiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5740

has super-classes
Giardiinaec
has sub-classes
Giardia intestinalisc

Giardia intestinalisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5741

has super-classes
Giardiac

Giardiinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_68459

has super-classes
Hexamitidaec
has sub-classes
Giardiac

given namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020016

has super-classes
personal namec

Gnathostomatac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7776

has super-classes
Vertebratac
has sub-classes
Teleostomic

gonotrophic cyclec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000314

has super-classes
biological processc

gonotrophic cycle durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000313

is equivalent to
is aboutop some one-dimensional temporal regionc and (has temporal occupantop some gonotrophic cyclec)
has super-classes
durationc
is aboutop some one-dimensional temporal regionc and (has temporal occupantop some gonotrophic cyclec)

gonotrophic period durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000475

governmental organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000400

IMPORTANT: The label "geopolitical organization" was previously used for OMRSE_00000044 (governmental organization). "geopoli organization" is a label for a new and different class.
has super-classes
organizationc
has sub-classes
sovereign statec, subnational entityc, supranational entityc
is in domain of
has jurisdiction inop, is subordinate authority ofop
is in range of
is subordinate authority ofop

grant identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001629

has super-classes
identifierc

graphc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000038

has super-classes
diagramc
has sub-classes
Venn diagramc, contour plotc, dendrogramc, density plotc, dot plotc, graph of verticesc, heatmapc, histogramc, line graphc, scatter plotc

graph of verticesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000714

has super-classes
graphc
has sub-classes
scale-free networkc

graphemec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020001

Authors :
Mathias Brochhausen
Grapheme is not about anything and hence is likely to not be an information content entity. If a new subclass of GDC for information structure entities is created it should move there.
has super-classes
information content entityc

graphical abstractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000707

has super-classes
abstractc

grazingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000358

Example: Giant panda and bamboo
is equivalent to
transient agonismc and (has partop some bodily harmc and (not (has partop some life-death temporal boundaryc)))
has super-classes
transient agonismc
has partop some bodily harmc and (not (has partop some life-death temporal boundaryc))

Guanarito mammarenavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_45219

has super-classes
Mammarenavirusc

Guaroa orthobunyavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1933274

has super-classes
Orthobunyavirusc
has sub-classes
Guaroa virusc

Guaroa virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_80941

has super-classes
Guaroa orthobunyavirusc

H1N1 subtypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_114727

has super-classes
Influenza A virusc

H2N2 subtypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_114729

has super-classes
Influenza A virusc

H3N2 subtypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_119210

has super-classes
Influenza A virusc

H5N1 subtypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_102793

has super-classes
Influenza A virusc

H5N2 subtypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_119220

has super-classes
Influenza A virusc

H5N6 subtypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_329376

has super-classes
Influenza A virusc

H5N8 subtypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_232441

has super-classes
Influenza A virusc

H7N2 subtypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_119214

has super-classes
Influenza A virusc

H7N7 subtypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_119218

has super-classes
Influenza A virusc

H7N9 subtypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_333278

has super-classes
Influenza A virusc

Haemophilusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_724

has super-classes
Pasteurellaceaec
has sub-classes
Haemophilus influenzaec, [Haemophilus] ducreyic

Haemophilus influenzaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_727

has super-classes
Haemophilusc

Haemosporidac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5819

has super-classes
Aconoidasidac
has sub-classes
Plasmodiidaec

Hantavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11598

has super-classes
Bunyaviridaec

Haplorrhinic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_376913

has super-classes
Primatesc
has sub-classes
Simiiformesc

health care encounterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000097

has super-classes
planned processc
health care processc
has sub-classes
ED encounterc, hospitalizationc, inpatient encounterc, outpatient encounterc

health care functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000172

is equivalent to
functionc and (is realized byop some health care encounterc)
has super-classes
functionc
is realized byop some health care encounterc

health care processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000096

has super-classes
processc
has sub-classes
health care encounterc

health care provider organization rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000015

Authors :
Amanda Hicks
Contributors :
Mathias Brochhausen
has super-classes
organization health care rolec
is realized byop some health care encounterc
has sub-classes
hospital rolec

healthcare facility identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000506

has super-classes
facility identifierc

heatmapc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000180

has super-classes
graphc

Helicobacterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_209

has super-classes
Helicobacteraceaec
has sub-classes
Helicobacter pyloric

Helicobacter pyloric back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_210

has super-classes
Helicobacterc

Helicobacteraceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_72293

has super-classes
Campylobacteralesc
has sub-classes
Helicobacterc

Henipavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_260964

has super-classes
Paramyxoviridaec
has sub-classes
Nipah henipavirusc

Hepacivirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11102

has super-classes
Flaviviridaec
has sub-classes
Hepatitis C virusc

Hepadnaviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10404

has super-classes
Retro-transcribing virusesc
has sub-classes
Orthohepadnavirusc

Hepatitis B virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10407

has super-classes
Orthohepadnavirusc

Hepatitis C virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11103

has super-classes
Hepacivirusc

Hepatitis delta virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12475

has super-classes
Deltavirusc

Hepatitis E virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12461

has super-classes
Orthohepevirus Ac

Hepatovirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12091

has super-classes
Picornaviridaec
has sub-classes
Hepatovirus Ac

Hepatovirus Ac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12092

has super-classes
Hepatovirusc

Hepeviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_291484

has super-classes
ssRNA positive-strand viruses, no DNA stagec
has sub-classes
Orthohepevirusc

Herpesviralesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_548681

has super-classes
dsDNA virus, no RNA stagec
has sub-classes
Herpesviridaec

Herpesviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10292

has super-classes
Herpesviralesc
has sub-classes
Alphaherpesvirinaec

heterogenous carrying capacityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000463

has super-classes
conditional specificationc

Hexamitidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5739

has super-classes
Diplomonadidac
has sub-classes
Giardiinaec

Hexapodac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6960

has super-classes
Pancrustaceac
has sub-classes
Insectac

histogramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000179

has super-classes
graphc

historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000182

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
processc
has sub-classes
life coursec
is disjoint with
process profilec

homeostasisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000032

has super-classes
dispositionc

Homo sapiensc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9606

has super-classes
Eukaryotac

Homo sapiens rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000050

is equivalent to
organism rolec and (characteristic ofop some Homo sapiensc)
has super-classes
organism rolec
characteristic ofop some Homo sapiensc
characteristic ofop only Homo sapiensc
has sub-classes
human patient rolec, human social rolec

horizontal pathogen transmission processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000656

has super-classes
transmission processc

hospital organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000056

is equivalent to
organizationc and (bearer ofop some hospital rolec)
has super-classes
organizationc
bearer ofop some hospital rolec
is in range of
is admitted to hospitalop

hospital patient populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000030

Key motivating use case was Synthia synthetic population data.
is equivalent to
collection of humansc and (has memberop only Homo sapiensc and (bearer ofop some patient rolec) and (is admitted to hospitalop exactly 1 hospital organizationc))
has super-classes
collection of humansc

hospital patient population censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000056

Motivating use case is to cover Synthia data, and possibly configuration/output of the MRSA simulator in the MIDAS community (CA-MRSA Repast).
is equivalent to
population censusc and (is aboutop some hospital patient populationc)
has super-classes
population censusc
is aboutop some hospital patient populationc

hospital rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000054

has super-classes
health care provider organization rolec

hospital stay datasetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000600

Date :
16T16:20:48Z/03/2021
Authors :
http://orcid.org/0000-0002-9881-1017
The dataset may be limited to stays in one hospital, but hospital discharge datasets as compiled by state departments of health typically contain stays from multiple hospitals (typically every hospital) in the geographical region over which they have jurisdiction
has super-classes
data setc

hospitalizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000098

has super-classes
health care encounterc

hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000531

is equivalent to
organismc and (has roleop some host rolec)
has super-classes
organismc
has roleop some host rolec

host organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000238

is equivalent to
organismc and (contains processop some reproductionc)
has super-classes
organismc
contains processop some reproductionc
has sub-classes
asymptomatic hostc, contagious organismc, infected organismc

host populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000516

has super-classes
populationc
has sub-classes
contagious populationc, exposed populationc, immune populationc, infected populationc, recovered populationc, susceptible populationc

host rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000629

has super-classes
organism rolec
characteristic ofop some organismc and (part ofop some extended organismc and (has partop some material entityc))

household transmission multiplierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000284

has super-classes
epidemic simulator action specificationc

human air travelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000533

has super-classes
human travelc

Human alphaherpesvirus 1c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10298

has super-classes
Simplexvirusc

Human alphaherpesvirus 2c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10310

has super-classes
Simplexvirusc

human daily movementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000601

Date :
16T16:29:53Z/03/2021
Authors :
http://orcid.org/0000-0002-9881-1017
has super-classes
individual human behaviorc

human daily movement data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000602

Date :
16T16:32:39Z/03/2021
Authors :
http://orcid.org/0000-0002-9881-1017
is equivalent to
data setc and (is aboutop some human daily movementc)
has super-classes
data setc
is aboutop some human daily movementc

human health care rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000010

has super-classes
role in human social processesc
is realized byop some health care encounterc
has sub-classes
patient rolec

Human herpesvirus 3c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10335

has super-classes
Varicellovirusc

Human immunodeficiency virus 1c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11676

has super-classes
Primate lentivirus groupc

Human immunodeficiency virus 2c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11709

has super-classes
Primate lentivirus groupc

human mobility data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000534

has super-classes
data itemc

human monkeypoxc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000615

Date :
18T18:51:00/09/2022
requested by MIDAS CC
is equivalent to
monkeypoxc and (characteristic ofop some Homo sapiensc)
has super-classes
monkeypoxc
characteristic ofop some Homo sapiensc

human patient rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000030

is equivalent to
patient rolec and (characteristic ofop some Homo sapiensc)
has super-classes
patient rolec
Homo sapiens rolec

Human poliovirus 1c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12080

has super-classes
Enterovirus Cc

Human poliovirus 3c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12086

has super-classes
Enterovirus Cc

human role within an organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000086

has super-classes
human social rolec and (is_specified_output_ofop some deontic declarationc and (process has causal agentop some organizationc or aggregate of organizationsc))

human social rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000001

has super-classes
organism social rolec
Homo sapiens rolec

human travelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000532

has super-classes
geographical movement of organismc
has sub-classes
human air travelc

human traveling informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000142

Authors :
Amanda Hicks
Contributors :
Jie Zheng
is equivalent to
information content entityc and (is aboutop some human travelc)
has super-classes
information content entityc
is aboutop some human travelc

hydrological precipitation processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000703

"process" is included in the label to make it clear that we are not referring to the precipitated material (e.g. snow, rain, sleet)
has super-classes
environmental system processc

hypothesis textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000415

has super-classes
textual entityc

identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020000

Authors :
Mathias Brochhausen
Sep 29, 2016: The current definition has been amended from the previous version: "A proper name is an information content entity that is the outcome of a dubbing process and is used to refer to one instance of entity shared by a group of people to refer to that individual entity." to more accuratly reflect the necessary and sufficient condition on the class. (MB)
is equivalent to
information content entityc and (denotesop some entityc) and (is_specified_output_ofop some identifier creating processc)
(denotesop some entityc) and (is_specified_output_ofop only identifier creating processc)
has super-classes
information content entityc
denotesop some entityc
is_specified_output_ofop some identifier creating processc
has sub-classes
Apollo pathogen codec, LOINC identifierc, PubMed identifierc, RxNorm drug concept identifierc, SNOMED concept identifierc, antiviral identifierc, apollo location codec, centrally registered identifierc, citation identifierc, complete simulator identifierc, complete software identifierc, complete software license identifierc, digital object identifierc, disease case identifierc, disease identifierc, disease transmission model identifierc, drug identifierc, facility identifierc, family namec, grant identifierc, name of temporal regionc, personal namec, postal codec, scenario datec, simulated population location identifierc, simulation requester identifierc, simulator version identifierc, software developer identifierc, software identifierc, software license identifierc, software license version identifierc, software version identifierc, taxonomy identifierc, time scale namec, unique resource locatorc, vaccination identifierc, vaccine identifierc

identifier creating processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020010

Authors :
Mathias Brochhausen
is equivalent to
planned processc and (has_specified_outputop some identifierc)
has_specified_outputop some identifierc
has super-classes
planned processc
has_specified_outputop some identifierc

identifier for species of casec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000485

has super-classes
taxonomy identifierc

identifier of species of diseased organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000484

has super-classes
taxonomy identifierc

identifier of species of populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000491

has super-classes
taxonomy identifierc

imagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000101

has super-classes
figurec
has sub-classes
photographc

immaterial entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000141

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
independent continuantc
has sub-classes
continuant fiat boundaryc, sitec, spatial regionc
is in range of
has 2D boundaryop
is disjoint with
material entityc

immune organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000206

is equivalent to
organismc and (bearer ofop some immune resistance to infectionc)
has super-classes
resistant organismc
bearer ofop some immune resistance to infectionc
has sub-classes
immune organism that acts like it is immunec, immune organism that acts like it is not immunec, recovered organismc

immune organism that acts like it is immunec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000299

has super-classes
immune organismc

immune organism that acts like it is not immunec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000300

has super-classes
immune organismc

immune populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000235

has super-classes
host populationc
has sub-classes
immune population acting like immunec, immune population acting like not immunec

immune population acting like immunec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000221

has super-classes
immune populationc

immune population acting like not immunec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000222

has super-classes
immune populationc

immune resistance to infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000151

is equivalent to
resistance to infectionc and (is realized byop only (has participantop some immune systemc) and (negatively regulatesop some realizesop some susceptibilityc))
has super-classes
resistance to infectionc
has sub-classes
naturally-acquired active immune resistancec

immune responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0006955

has super-classes
biological processc

immune systemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002405

This class was created automatically from a combination of ontologies
has super-classes
anatomical systemc

immunocompetencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000618

The disposition inheres in a bearer in virtue of the fact that the bearer has all canonical immune system components and none are disordered. The disposition is realized in a successful immune response.
has super-classes
dispositionc
(characteristic ofop some organismc) and (is realized byop only immune responsec)
is disjoint with
pathogenic dispositionc, diseasec

immunocompetent organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000457

is equivalent to
organismc and (has dispositionop some immunocompetencec)
has super-classes
organismc
has dispositionop some immunocompetencec

immunosuppressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000610

is equivalent to
processc and (negatively regulatesop some immune responsec)
has super-classes
processc
negatively regulatesop some immune responsec

import ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000005

has super-classes
subset ontology modulec
has sub-classes
external import ontology modulec

in contact withc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001961

has super-classes
structurec

incident case countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000649

The interval over which the count is made is typically either one calendar day or one calendar week. The reference interval is usually relative to (i.e., occupied by) a major event like an epidemic, or it is a specific calendar-defined interval like a given calendar year or a set of consecutive "epidemiological weeks" as defined by CDC or another national or subnational public health organization.
has super-classes
count of disease casesc
has sub-classes
incident epidemic case countc

incident death countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000647

The interval over which the count is made is typically either one calendar day or one calendar week. The reference interval is usually relative to (i.e., occupied by) a major event like an epidemic, or it is a specific calendar-defined interval like a given calendar year or a set of consecutive "epidemiological weeks" as defined by CDC or another national or subnational public health organization.
has super-classes
count of deaths in a populationc
has sub-classes
incident epidemic death countc

incident epidemic case countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000623

The count is also nearly always geographically localized, for example, the case count for the state of Pennsylvania or the case count for Waukesha County, Wisconsin.
has super-classes
count of cases in an epidemicc
incident case countc

incident epidemic death countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000632

has super-classes
incident death countc

incident epidemic hospitalization countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000634

has super-classes
incident hospitalization countc

incident epidemic infection countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000630

has super-classes
incident infection countc

incident epidemic vaccination countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000636

has super-classes
incident vaccination countc

incident hospitalization countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000645

The interval over which the count is made is typically either one calendar day or one calendar week. The reference interval is usually relative to (i.e., occupied by) a major event like an epidemic, or it is a specific calendar-defined interval like a given calendar year or a set of consecutive "epidemiological weeks" as defined by CDC or another national or subnational public health organization.
has super-classes
count of hospital stays in a populationc
has sub-classes
incident epidemic hospitalization countc

incident infection countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000643

The interval over which the count is made is typically either one calendar day or one calendar week. The reference interval is usually relative to (i.e., occupied by) a major event like an epidemic, or it is a specific calendar-defined interval like a given calendar year or a set of consecutive "epidemiological weeks" as defined by CDC or another national or subnational public health organization.
has super-classes
count of infections in a populationc
has sub-classes
incident epidemic infection countc

incident vaccination countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000641

The interval over which the count is made is typically either one calendar day or one calendar week. The reference interval is usually relative to (i.e., occupied by) a major event like an epidemic, vaccination campaign, or it is a specific calendar-defined interval like a given calendar year or a set of consecutive "epidemiological weeks" as defined by CDC or another national or subnational public health organization.
has super-classes
count of vaccinations in a populationc
has sub-classes
incident epidemic vaccination countc

incubation periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000317

has super-classes
processc
temporal part ofop some processc and (realizesop some infectious diseasec)

independent continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000004

is defined by
http://purl.obolibrary.org/obo/bfo.owl
A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.
has super-classes
continuantc
part ofop only independent continuantc
has sub-classes
aggregate of geopolitical organizationsc, aggregate of governmental organizationsc, anatomical entityc, contaminated thingc, immaterial entityc, material entityc, obsolete group of governmental organizationsc
is in domain of
adjacent toop, capable ofop, has dispositionop, has functionop, has roleop, is carrier ofop, located inop, occupies spatial region at some timeop
is in range of
adjacent toop, generically depends onop, has end locationop, has part that occurs inop, has spatial occupant at some timeop, has start locationop, located inop, occurs inop
is disjoint with
characteristicc, generically dependent continuantc, characteristicc, generically dependent continuantc

indexable Apollo itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000202

A class representing an abstract type. This class has no attributes and programmers should use it to determine whether an instance should be saved or can be retrieved.
has super-classes
information content entityc

individual human behaviorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000402

has super-classes
behaviorc
has sub-classes
human daily movementc, self-initiated travel avoidance behaviorc

individual mosquito behaviorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000401

has super-classes
behaviorc

individual mosquito reproductionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000312

is equivalent to
reproductionc and (has active participantop some Culicidaec)
has super-classes
reproductionc
obsolete multicellular organism reproductionc
has active participantop some Culicidaec

individual treatment control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000194

has super-classes
infectious disease control strategyc and (has partop some action specificationc and (is aboutop some is realized byop only treatmentc))
has sub-classes
anti-infective individual treatment control strategyc, decolonization control strategyc, physical distancing infectious disease control measurec, ring individual treatment control strategyc, treatment in the ICU control strategyc, vaccination control strategyc

individual treatment control strategy action specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000795

has super-classes
infectious disease control strategy action specificationc
has sub-classes
antiviral administration schedulec, antiviral coursec, antiviral supply schedulec, control strategy dose schedulec, vaccination administration capacityc, vaccination coursec, vaccine supply schedulec

individual treatment strategy administration capacity unit of measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000293

has super-classes
unitc

individual treatment strategy supply schedule unit of measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000292

has super-classes
unitc

indoor residual spraying vector control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000391

has super-classes
vector control strategyc

infected organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000209

is equivalent to
host organismc and (not (has dispositionop some contagiousnessc))
has super-classes
host organismc

infected populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000233

is equivalent to
host populationc and (has memberop only organismc and (contains processop some infectionc))
has super-classes
host populationc

infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000114

Authors :
M. Brochhausen
infection is reproduction of a pathogen inside some tissue of a host. By associating infection with the classes latent period and infectious period, which are associated with specific pathogen species and host species, Apollo-SV defines infection further as reproduction of a particular pathogen taxon inside some tissue of a particular host taxon.
is equivalent to
reproductionc and (occurs inop some tissuec and (part ofop some organismc))
has super-classes
reproductionc
occurs inop some tissuec and (part ofop some organismc)
immediately preceded byop some infection acquisitionc

infection acquisitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000115

Apollo-SV defines infection acquisition rather than infection transmission, which is the direction of movement of a pathogen in current use. The Apollo-SV conceptualization is simpler when accounting for infections acquired from contaminated things. The likelihood of acquisition is expressed by parameters such as the basic reproduction rate and transmission coefficient. An infection is acquired from an infectious organism or a contaminated thing.
is equivalent to
entry into hostc and (occurs inop some organismc and (bearer ofop some susceptibilityc)) and (has participantop some contaminated thingc or (host organismc and (bearer ofop some contagiousnessc))) and (causally upstream ofop some infectionc)
has super-classes
entry into hostc
occurs inop some organismc and (bearer ofop some susceptibilityc)
has participantop some contaminated thingc or (host organismc and (bearer ofop some contagiousnessc))
causally upstream ofop some infectionc
has sub-classes
infection acquisition from contaminated thingc, infection acquisition from infectious hostc

infection acquisition datasetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000599

Date :
16T16:16:26Z/03/2021
Authors :
http://orcid.org/0000-0002-9881-1017
The dataset may include sites (e.g. types of facilities, rooms), events (e.g., church service whether in or outdoors), dates, times, geographical regions, etc. in which the sites/events are located, and so on.
is equivalent to
data setc and (is aboutop some infection acquisitionc)
has super-classes
data setc
is aboutop some infection acquisitionc

infection acquisition from contaminated thingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000264

is equivalent to
entry into hostc and (occurs inop some organismc and (bearer ofop some susceptibilityc)) and (has participantop some contaminated thingc) and (causally upstream ofop some infectionc)
has super-classes
infection acquisitionc
has participantop some contaminated thingc

infection acquisition from infectious hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000265

is equivalent to
entry into hostc and (occurs inop some organismc and (bearer ofop some susceptibilityc)) and (has participantop some host organismc and (bearer ofop some contagiousnessc)) and (causally upstream ofop some infectionc)
has super-classes
infection acquisitionc
has participantop some host organismc and (bearer ofop some contagiousnessc)
has sub-classes
infection acquisition from vertical transmissionc, infection acquisition through sexual activity with infectious hostc

infection acquisition from vertical transmissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000521

has super-classes
infection acquisition from infectious hostc

infection acquisition through sexual activity with infectious hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000511

Note that infections that are acquired in this manner do not fall within the class of sexually transmitted infections (STI's), ipso facto. This type of transmission can also occur with non-STI pathogens--such as meningitis and Zika.
has super-classes
infection acquisition from infectious hostc

infection acquistion from self colonizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000334

is equivalent to
biological processc and (immediately preceded byop some colonizationc and (has participantop some pathogenc) and (has participantop some host organismc and (participates inop some immediately precedesop some infectionc)))
has super-classes
entry into hostc
immediately preceded byop some colonizationc and (has participantop some pathogenc) and (has participantop some host organismc and (participates inop some immediately precedesop some infectionc))

infection case listc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000397

has super-classes
data setc

infection case recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000398

is equivalent to
is aboutop exactly 1
has super-classes
data setc
is aboutop some organismc and (participates inop some infectionc)

infection in ecosystemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000306

has super-classes
processc
has proper occurrent partop some infectionc
has proper occurrent partop some infection acquisitionc
has sub-classes
endemicc, epidemicc, infection in populationc

infection in populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000331

has super-classes
infection in ecosystemc

infection incidencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000480

A particular instance of infection incidence will depend on a type of infectious agent, a population, and a period of time. Incidence is used as a measure of risk. Actual measures of incidence are based only on reported cases and usually specify a time interval and geographic location. Other constraints may include population demographics. These constraints will vary with the context of the incidence measure.
has super-classes
qualityc
characteristic ofop some organism populationc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

infection incidence proportionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000482

An instance of infection incidence proportion is measured by dividing a measure of an instance of infection incidence by the number of members of the population not infected at the beginning of the specified period of time over which the incidence was measured.
has super-classes
qualityc
characteristic ofop some organism populationc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

infection incidence ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000484

An instance of infection incidence rate is measured by dividing a measure of an instance of infection incidence proportion by the length of the period of time over which the incidence was measured.
has super-classes
qualityc
characteristic ofop some organism populationc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

infection prevalencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000486

Prevalence is sometimes defined as a proportion with total population size in the denominator. A particular instance of infection prevalence will depend on a type of infectious agent, a population, and a period of time. Actual measures of prevalence are based only on reported cases and usually specify a time interval and geographic location. Other constraints may include population demographics.
has super-classes
qualityc
characteristic ofop some organism populationc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

infection state data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000217

has super-classes
data itemc

infectious agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000596

is equivalent to
organismc and (has dispositionop some infectious dispositionc)
has super-classes
pathogenc
organismc
has dispositionop some infectious dispositionc
has sub-classes
opportunistic pathogenc, primary pathogenc

infectious agent seroprevalencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000488

Prevalence is sometimes defined as a proportion with total population size in the denominator. A particular instance of infectious agent seroprevalence will depend on a type of infectious agent and a population. Actual measures of seroprevalence are based only on tested individuals and usually specify a geographic location. Other constraints may include population demographics.
has super-classes
qualityc
characteristic ofop some organism populationc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

infectious agent transmissibilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000463

The transmissibility quality varies with both the type of organism being transmitted and the type of organism to which transmission is happening.
has super-classes
qualityc
characteristic ofop some infectious agentc
is disjoint with
infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

infectious diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000239

Infection is the etiological process, as defined by OGMS, for infectious disease. However, OGMS does not relate its etiological process class to its disorder class as of this writing. So it is not clear how to connect infectious disease to its infection etiological process.
is equivalent to
diseasec and (is realized byop only disease coursec and (causally downstream ofop some infectionc)) and (characteristic ofop only host organismc)
has super-classes
diseasec
has sub-classes
Zika feverc, dengue diseasec, influenzac, monkeypoxc

infectious disease control objective specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000075

typically, the process endpoint is achievement of R0 < 1
has super-classes
objective specificationc
has sub-classes
control strategy target population fractionc

infectious disease control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000086

The essential goal of an infectious disease control strategy is to protect the susceptible organisms in a population.
is equivalent to
plan specificationc and (has partop some infectious disease control objective specificationc)
has super-classes
plan specificationc
has partop some infectious disease control objective specificationc
has sub-classes
case isolation control strategyc, contact tracingc, liberal sick leave control strategyc, place closure control strategyc, quarantine control strategyc, travel-related infectious disease control strategyc, vector control strategyc, voluntary household quarantine control strategyc, zoo-prophylaxis control strategyc

infectious disease control strategy action specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000794

has super-classes
action specificationc
has sub-classes
fixed control strategy start time specificationc, individual treatment control strategy action specificationc, school closure durationc, vector control action specificationc

infectious disease control strategy cover radiusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000459

has super-classes
length measurement datumc

infectious disease control strategy executionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000029

is equivalent to
planned processc and (realizesop some concretizesop some plan specificationc and (has partop some infectious disease control objective specificationc))
has super-classes
planned processc
realizesop some concretizesop some plan specificationc and (has partop some infectious disease control objective specificationc)

infectious disease control strategy trigger definitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000261

Authors :
William R. Hogan
has super-classes
rulec
has sub-classes
disease surveillance trigger definitionc, temporal trigger definitionc, treatment surveillance trigger definitionc

infectious disease endemicityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000490

A particular instance of infectious disease endemicity will depend on a type of infectious agent and a population. The population may be specified by temporal, geographic, or demographic constraints. Infectious diseases that are typical or common to a particular population are referred to as endemic.
has super-classes
qualityc
characteristic ofop some organism populationc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease sporadicityc

infectious disease forecastc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000579

has super-classes
planned processc
has sub-classes
infectious disease nowcastc, prospective infectious disease forecastc

infectious disease forecast objective specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000581

has super-classes
objective specificationc
has sub-classes
infectious disease nowcast objective specificationc

infectious disease forecast time specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000586

has super-classes
action specificationc

infectious disease forecasterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000557

has super-classes
simulation software applicationc
has sub-classes
infectious disease nowcasterc

infectious disease incidencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000479

A particular instance of infectious disease incidence will depend on a type of infectious disease, a population, and a period of time. Incidence is used as a measure of risk. Actual measures of incidence are based only on reported cases and usually specify a time interval and geographic location. Other constraints may include population demographics. These constraints will vary with the context of the incidence measure.
has super-classes
qualityc
characteristic ofop some organism populationc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

infectious disease incidence proportionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000481

An instance of infectious disease incidence proportion is measured by dividing a measure of an instance of infectious disease incidence by the number of members of the population in which the infectious disease course had not begun at the beginning of the specified period of time over which the incidence was measured.
has super-classes
qualityc
characteristic ofop some organism populationc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

infectious disease incidence ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000483

An instance of infectious disease incidence rate is measured by dividing a measure of an instance of the infectious disease incidence proportion by the length of the period of time over which the incidence was measured.
has super-classes
qualityc
characteristic ofop some organism populationc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

infectious disease lifetime prevalencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000487

Prevalence is sometimes defined as a proportion with total population size in the denominator. A particular instance of infectious disease lifetime prevalence will depend on a type of infectious disease and a population. Actual measures of prevalence are based only on reported cases and usually specify a geographic location. Other constraints may include population demographics.
has super-classes
qualityc
characteristic ofop some organism populationc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

infectious disease mortality ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000489

A particular instance of infectious disease mortality rate will depend on a type of infectious disease and a population. Actual measures of mortality rate are based only on reported cases and usually specify a geographic location. Other constraints may include population demographics. Mortality rate is typically expressed in units of deaths per 1000 individuals per year.
has super-classes
qualityc
characteristic ofop some organism populationc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease endemicityc, infectious disease sporadicityc

infectious disease nowcastc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000580

has super-classes
infectious disease forecastc
has sub-classes
prospective infectious disease nowcastc

infectious disease nowcast objective specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000582

has super-classes
infectious disease forecast objective specificationc

infectious disease nowcasterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000583

has super-classes
infectious disease forecasterc

infectious disease prevalencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000485

Prevalence is sometimes defined as a proportion with total population size in the denominator. A particular instance of infectious disease prevalence will depend on a type of infectious disease, a population, and a period of time. Actual measures of prevalence are based only on reported cases and usually specify a time interval and geographic location. Other constraints may include population demographics.
has super-classes
qualityc
characteristic ofop some organism populationc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

infectious disease scenarioc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000184

An infectious disease scenario contains counts of infections of a particular pathogen in a particular host in a particular ecosystem at a particular point in time, minimally. Agent-based ecosystems represent each host individually. The infectious disease scenario typically also includes a lot of additional data about the ecosystem, including data about things like transmission probabililites, control measures, the immunity or other resistance status of host individuals, and so on.
has super-classes
data setc
is aboutop some ecosystemc

infectious disease sporadicityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000494

Sporadic quality of infectious disease is relational to previous prevalence of the disease.
has super-classes
qualityc
characteristic ofop some organism populationc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc

infectious disease treatment efficacyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000227

need to generate class restriction. Something like: 'is realized by' some (processual_entity and (has_participant some ('Anatomical structure' and ('is physical basis of' some 'protective resistance')) we'd also like to say that the protective resistance disposition began to exist during the process. can't recall whether we should use process or processual_entity for future BFO compatibility.
has super-classes
dispositionc
has sub-classes
antiviral treatment efficacyc, vaccination efficacyc

infectious dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000452

The disposition is realized in a process that has as part a transmission process, an establishment in host process, a process that results in a disorder, and a process in which the bearer of the disposition becomes part of that disorder. The infectious disposition has a complementary disposition that inheres in an organism and is the capability to be host to an organism with an infectious disposition and to undergo processes initiated by that infectious organism that result in a disorder.
has super-classes
pathogenic dispositionc
(characteristic ofop some organismc) and (is realized byop only processc and (has partop some establishment of localization in hostc) and (has partop some appearance of disorderc) and (has partop some transmission processc))
has sub-classes
communicabilityc, opportunistic infectious dispositionc, primary infectious dispositionc, reverse zoonotic dispositionc, zoonotic dispositionc

infectious periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000140

is equivalent to
(temporal part ofop some infectionc) and (has participantop some host organismc and (bearer ofop some contagiousnessc)) and (immediately preceded byop some latent periodc)
has super-classes
processc
temporal part ofop some infectionc
has participantop some host organismc and (bearer ofop some contagiousnessc)
immediately preceded byop some latent periodc

infectious period durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000016

MB: In order to get the temporal occupation relations I added properties that I renamed with BFO2 URIs.
has super-classes
durationc
is aboutop some one-dimensional temporal regionc and (has temporal occupantop some infectious periodc)

infectiousnessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000404

The disposition of Influenza A virus H3N2 subtype to infect human beings, the disposition of Plasmodium vivax to infect mosquitos and humans, the disposition of foot and mouth disease virus to infect cloven-hooved animals (sheep, cows, pigs, etc.).
is equivalent to
dispositionc and (characteristic ofop some organismc) and (is realized byop only infectionc)
has super-classes
dispositionc
characteristic ofop some organismc

infectiousness profilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000226

This is probably a 'process profile' according to BFO2
has super-classes
process profilec

infectivityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000464

This quality is measured by the proportion of exposed who become infected.
has super-classes
qualityc
characteristic ofop some organism populationc
is disjoint with
infectious agent transmissibilityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

influenzac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_8469

has super-classes
infectious diseasec

Influenza A virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11320

has super-classes
Influenzavirus Ac
has sub-classes
H1N1 subtypec, H2N2 subtypec, H3N2 subtypec, H5N1 subtypec, H5N2 subtypec, H5N6 subtypec, H5N8 subtypec, H7N2 subtypec, H7N7 subtypec, H7N9 subtypec

Influenza B virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11520

has super-classes
Influenzavirus Bc

Influenzavirus Ac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_197911

has super-classes
Orthomyxoviridaec
has sub-classes
Influenza A virusc

Influenzavirus Bc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_197912

has super-classes
Orthomyxoviridaec
has sub-classes
Influenza B virusc

information carrierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000015

is equivalent to
qualityc and (concretizesop some information content entityc)
has super-classes
qualityc
concretizesop some information content entityc

information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000030

has super-classes
generically dependent continuantc
is aboutop some entityc
has sub-classes
MIDAS scenario representationc, case definitionc, census reference datec, code setc, contact definitionc, control strategy start time informationc, control strategy stop time informationc, data itemc, data item labelc, directive information entityc, documentc, document partc, email addressc, figurec, geodetic datumc, graphemec, human traveling informationc, identifierc, indexable Apollo itemc, journalc, location definitionc, lower boundc, maximum travel distance in km informationc, narrative objectc, population strata definitionc, probability distributionc, school closure target facilitiesc, seasonal function parameterc, symbolc, target population definitionc, target populations and prioritizations informationc, textual entityc, treatment system logisticsc, unitc, upper boundc, vaccination efficacy for simulator configurationc, value specificationc
is in domain of
denotesop, is aboutop
is in range of
denoted byop

Inkoo virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_45269

has super-classes
California encephalitis orthobunyavirusc

inpatient encounterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000100

has super-classes
health care encounterc
has sub-classes
intensive care unit encounterc

Insectac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_50557

has super-classes
Hexapodac
has sub-classes
Dicondyliac

insecticide-treated net control measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000499

has super-classes
adult vector control strategyc

institution listc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000322

has super-classes
document partc
has partop some institutional identificationc

institutional identificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000303

has super-classes
textual entityc

integer numeralc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000031

has super-classes
numeralc

intensive care unit encounterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000587

has super-classes
inpatient encounterc

intent to be vaccinatedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000637

has super-classes
intentionalityc

intent to have a child vaccinatedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000652

The case of adult children is eliminated through the use of guardian and ward roles in the definition. The parent no longer has a guardian role, and the child no longer has a ward role, once the child is of legal age to make their own decisions. That is, those roles cease to exist.
has super-classes
intent to have a ward vaccinatedc

intent to have a ward vaccinatedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000650

Legally, this covers the situation of a parent intending to have their child vaccinated. That is because the parent(s) is(are) the natural gaurdian of the child. Other individuals appointed by a court as guardian are legal guardians. If the specific case of parent / child is required, we could create a subclass of this one where the guardian = parent of the ward, and ward = child. However, that could get into issues of adoption, etc. At the current time we do not have guardian role and ward role classes in OMRSE.
has super-classes
intentionalityc
has sub-classes
intent to have a child vaccinatedc

intent to vaccinatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000638

has super-classes
intentionalityc

intentionalityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MF_0000073

has super-classes
mental qualityc
has sub-classes
intent to be vaccinatedc, intent to have a ward vaccinatedc, intent to vaccinatec

inter-personal contact probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000147

has super-classes
TODOc

intergovernmental organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000395

Contributors :
Katrina Donovan
examples: North American Free Trade Argreement [NAFTA] , Universal Postal Union [UPU], Oragnaization of American States [OAS], World Bank), Organization of Petroleum exporting countries [OPEC] United Nations [UN[, The World Trade Organization [WTO], The World Health Organization [WHO], UNICEF
has super-classes
geopoli organizationc

intervention designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000115

has super-classes
study designc

intimate agonismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000341

has super-classes
agonismc
has sub-classes
ectosymbiotic parasitismc, ectosymbiotic parasitoidismc

introduction to a publication about an investigationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000316

has super-classes
document partc
is aboutop some objective specificationc

investigationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000066

has super-classes
planned processc
has sub-classes
case seriesc

investigation descriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001615

has super-classes
textual entityc

investigation identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001628

has super-classes
centrally registered identifier symbolc

islandc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000376

has super-classes
subcontinental land massc

Jamestown Canyon virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_35511

has super-classes
California encephalitis orthobunyavirusc

Japanese encephalitis virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11072

has super-classes
Japanese encephalitis virus groupc

Japanese encephalitis virus groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11071

has super-classes
Flavivirusc
has sub-classes
Japanese encephalitis virusc, Koutango virusc, Murray Valley encephalitis virusc, St. Louis encephalitis virusc, West Nile virusc

joint probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000246

has super-classes
probability distributionc
has sub-classes
Bayesian networkc

journalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FBcv_0000787

has super-classes
information content entityc

journal articlec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000013

has super-classes
reportc
publicationc
is_specified_output_ofop some publishing processc
is_specified_output_ofop only publishing processc

Junin mammarenavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11619

has super-classes
Mammarenavirusc

keyword textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000629

has super-classes
textual entityc

keywords sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000630

has super-classes
document partc
has partop some keyword textual entityc

kinase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0016301

Note that this term encompasses all activities that transfer a single phosphate group; although ATP is by far the most common phosphate donor, reactions using other phosphate donors are included in this term.
has super-classes
gene product or complex activityc
is kinase activityop

Kinetoplastidac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5653

has super-classes
Euglenozoac
has sub-classes
Trypanosomatidaec

Klebsiellac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_570

has super-classes
Enterobacteriaceaec
has sub-classes
Klebsiella granulomatisc

Klebsiella granulomatisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_39824

has super-classes
Klebsiellac

Koutango virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_44025

has super-classes
Japanese encephalitis virus groupc

La Crosse virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11577

has super-classes
California encephalitis orthobunyavirusc

laboratory findingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000018

has super-classes
clinical findingc

laboratory test LOINC identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000494

has super-classes
LOINC identifierc

laboratory testing capacityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000613

Date :
18T18:21/09/2022
has super-classes
action specificationc

laboratory testing facility censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000610

Date :
01T00:10:00Z/02/2022
Authors :
https://orcid.org/0000-0002-9881-1017
The census might also include information about each facility such as operating hours, address, accessibility, and so on.
has super-classes
censusc
data setc and (has partop some countc and (is aboutop some facilityc))

Lactobacillalesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186826

has super-classes
Bacillic
has sub-classes
Streptococcaceaec

land massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000375

has super-classes
geographical regionc
has sub-classes
aggregate of contiguous land massesc, continentc, subcontinental land massc
is in range of
has jurisdiction inop

larvicide control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000328

has super-classes
vector control strategyc
has sub-classes
Wolbachia prerelease larvicide vector control strategyc

Lassa mammarenavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11620

has super-classes
Mammarenavirusc

latent periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000118

is equivalent to
(temporal part ofop some infectionc) and (has participantop some host organismc and (not (bearer ofop some contagiousnessc)))
has super-classes
processc
temporal part ofop some infectionc
has participantop some host organismc and (not (bearer ofop some contagiousnessc))

latent period durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000017

MB: In order to get the temporal occupation relations I added properties that I renamed with BFO2 URIs
has super-classes
durationc
is aboutop some one-dimensional temporal regionc and (has temporal occupantop some latent periodc)

latitude and longitude coordinate pairc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000503

has super-classes
geodetic datumc

latitude coordinate measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001620

has super-classes
geodetic coordinate measurement datumc

Laurasiatheriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_314145

has super-classes
Boreoeutheriac
has sub-classes
Carnivorac, Cetartiodactylac, Perissodactylac

leakage rate of Wolbachia infection in mosquito population infected with Wolbachiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000412

has super-classes
rate measurement datumc

Legionellac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_445

has super-classes
Legionellaceaec

Legionellaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_444

has super-classes
Legionellalesc
has sub-classes
Legionellac

Legionellalesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_118969

has super-classes
Gammaproteobacteriac
has sub-classes
Coxiellaceaec, Legionellaceaec

lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000122

has super-classes
1-D extentc
has sub-classes
radiusc

length measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000408

has super-classes
scalar measurement datumc
has measurement unit labelop some length unitc
is quality measurement ofop some lengthc
has sub-classes
infectious disease control strategy cover radiusc, male mosquito mating radiusc, vector bite radiusc

length unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000001

has super-classes
measurement unit labelc
is in range of
has coordinate unit labelop

Lentivirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11646

has super-classes
Orthoretrovirinaec
has sub-classes
Primate lentivirus groupc

leotiomycetac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_716546

has super-classes
Pezizomycotinac
has sub-classes
Eurotiomycetesc

Leptospirac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_171

has super-classes
Leptospiraceaec

Leptospiraceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_170

has super-classes
Leptospiralesc
has sub-classes
Leptospirac

Leptospiralesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1643688

has super-classes
Spirochaetiac
has sub-classes
Leptospiraceaec

liberal sick leave control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000323

has super-classes
infectious disease control strategyc

life coursec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000092

has super-classes
historyc

life cycle temporal boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0035943

has super-classes
processc
has sub-classes
life-death temporal boundaryc

life stages with duration and mortalityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000417

has super-classes
data representational modelc

life-death temporal boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0035944

has super-classes
life cycle temporal boundaryc

line graphc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000573

has super-classes
graphc

linear distance travelled between ovipositsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000452

has super-classes
epidemic simulator action specificationc

Listeriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1637

has super-classes
Listeriaceaec
has sub-classes
Listeria grayic, Listeria ivanoviic, Listeria monocytogenesc

Listeria grayic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1641

has super-classes
Listeriac

Listeria ivanoviic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1638

has super-classes
Listeriac

Listeria monocytogenesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1639

has super-classes
Listeriac

Listeriaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186820

has super-classes
Bacillalesc
has sub-classes
Listeriac

location definitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000377

has super-classes
information content entityc

location of sampling processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000520

has super-classes
geographical regionc

lockdown infectious disease control measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000621

Contributors :
William R. Hogan
The places that are allowed to stay open are typically selected by the local or state government, and often include hospitals, many healthcare facilities, food stores and food banks, and law enforcement and emergency services.
has super-classes
place closure control strategyc

log normal distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000254

has super-classes
continuous parametric probability distributionc

LOINC identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000493

has super-classes
identifierc
has sub-classes
laboratory test LOINC identifierc

longitude coordinate measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001621

has super-classes
geodetic coordinate measurement datumc

looking up a centrally registered identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000580

has super-classes
planned processc
has_specified_inputop some centrally registered identifier symbolc
has_specified_outputop some information content entityc
has participantop some centrally registered identifier registryc

lot numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000132

has super-classes
symbolc

lower boundc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000436

has super-classes
information content entityc

Lujo mammarenavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_649188

has super-classes
Mammarenavirusc

Lyssavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11286

has super-classes
Rhabdoviridaec
has sub-classes
Rabies lyssavirusc

Macacac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9539

has super-classes
Cercopithecinaec
has sub-classes
Macaca fascicularisc, Macaca mulattac

Macaca fascicularisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9541

has super-classes
Macacac

Macaca mulattac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9544

has super-classes
Macacac

Machupo mammarenavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11628

has super-classes
Mammarenavirusc

main release ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000003

has super-classes
ontology modulec

major administrative subdivisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000005

examples: Northern Ireland, Florida
has super-classes
subnational entityc

malec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000384

has super-classes
biological sexc

male mosquito mating radiusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000458

has super-classes
length measurement datumc

Mammaliac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_40674

has super-classes
Amniotac
has sub-classes
Theriac

Mammarenavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1653394

has super-classes
Arenaviridaec
has sub-classes
Guanarito mammarenavirusc, Junin mammarenavirusc, Lassa mammarenavirusc, Lujo mammarenavirusc, Machupo mammarenavirusc, Sabia mammarenavirusc

Mandibulatac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_197563

has super-classes
Arthropodac
has sub-classes
Pancrustaceac

Marburg marburgvirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11269

has super-classes
Marburgvirusc

Marburgvirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186537

has super-classes
Filoviridaec
has sub-classes
Marburg marburgvirusc

massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000125

has super-classes
physical qualityc

mass measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000414

has super-classes
scalar measurement datumc
(has measurement unit labelop only mass unitc) and (is quality measurement ofop only massc)

mass unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000002

has super-classes
measurement unit labelc

material anatomical entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000465

has super-classes
material entityc
anatomical entityc
has sub-classes
anatomical structurec

material entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000040

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
independent continuantc
has sub-classes
abiotic ecosystemc, abiotic ecosystem elementc, aggregate of organizationsc, architectural structurec, biotic ecosystemc, disorderc, ecosystemc, environmental materialc, fiat objectc, geographical entityc, material anatomical entityc, material information bearerc, objectc, object aggregatec, organismc, organizationc, pathogenc, processed materialc
is in domain of
causal relation between material entity and a processop, colocalizes withop, directly negatively regulates activity ofop, directly positively regulates activity ofop, directly regulates activity ofop, has 2D boundaryop, has historyop, interacts withop, produced byop, producesop, regulates activity ofop
is in range of
colocalizes withop, directly negatively regulates activity ofop, directly positively regulates activity ofop, directly regulates activity ofop, history ofop, interacts withop, produced byop, producesop, realized in response to stimulusop, regulates activity ofop
is disjoint with
immaterial entityc

material entity rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000048

is equivalent to
rolec and (characteristic ofop some material entityc)
has super-classes
rolec
characteristic ofop some material entityc
characteristic ofop only material entityc
has sub-classes
organism rolec, organization rolec, role in human social processesc

material information bearerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000178

is equivalent to
material entityc and (bearer ofop some concretizesop some information content entityc)
has super-classes
material entityc
bearer ofop some concretizesop some information content entityc
has sub-classes
photographic printc

materials sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000633

has super-classes
document partc

maximum seasonal latitudec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000274

has super-classes
seasonal function parameterc

maximum travel distance in km informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000289

has super-classes
information content entityc

maximum valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000433

has super-classes
data itemc

mean air temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000514

has super-classes
average valuec

mean median minimum maximum summary statistics data structurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000462

has super-classes
data representational modelc

mean rate of hydrological precipitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000513

has super-classes
average valuec

mean with confidence intervalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000424

has super-classes
data representational modelc

mean with standard deviationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000425

has super-classes
data representational modelc

Measles virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11234

has super-classes
Morbillivirusc

measured vaccination efficacyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000089

1. Apollo-SV does not distinguish between ‘vaccine efficacy’ and ‘vaccine effectiveness.’ 2. Apollo-SV also considers the use of ‘vaccine’ in both terms a misnomer.
has super-classes
measurement datumc
measurement datumc and (is aboutop some vaccination efficacyc) and (is aboutop some PCO:collection of organismsc and (has memberop only organismc and (participates inop some vaccinationc)))

measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000109

has super-classes
data itemc
has sub-classes
calculated datumc, control strategy response delayc, control strategy stand-down delayc, countc, effect size estimatec, fraction of contaminated thingc, fraction of vector adults affectedc, fraction reduction of eggsc, fraction reduction of larvaec, geodetic coordinate measurement datumc, measured vaccination efficacyc, scalar measurement datumc, susceptibility measurement datumc, time stamped measurement datumc, true negative ratec, true positive ratec
is in domain of
is quality measurement ofop

measurement methods sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000704

has super-classes
methods sectionc

measurement unit labelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000003

has super-classes
data item labelc
has sub-classes
area unitc, dimensionless unitc, length unitc, mass unitc, plane angle measurement unit labelc, rate unitc, time unitc
is in range of
has measurement unit labelop

mechanical flight functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000556

has super-classes
functionc

Meleagridinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_466552

has super-classes
Phasianidaec
has sub-classes
Meleagrisc

Meleagrisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9102

has super-classes
Meleagridinaec
has sub-classes
Meleagris gallopavoc

Meleagris gallopavoc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9103

has super-classes
Meleagrisc

mental qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MF_0000075

has super-classes
bodily qualityc
has sub-classes
intentionalityc

metagenomics analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ERO_0000657

has super-classes
planned processc

metagenomics analysis softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000592

has super-classes
software applicationc

metapopulation disease transmission modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000552

has super-classes
disease transmission modelc

Metazoac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33208

has super-classes
Opisthokontac
has sub-classes
Eumetazoac

methods sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000317

has super-classes
document partc
is aboutop some study designc
has sub-classes
measurement methods sectionc

Metschnikowiaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_27319

has super-classes
Saccharomycetalesc
has sub-classes
Clavisporac

MIDAS scenarioc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000161

MIDAS scenario representationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000162

need to change the text definition. need to change label to be more consistent with current Apollo terminology (possibly 'infectious disease scenario'.
is equivalent to
information content entityc and (is aboutop some ecosystemc and (has proper continuant part at all timesop some biotic ecosystemc and (has proper continuant part at all timesop some exposed populationc) and (has proper continuant part at all timesop some contagious populationc) and (has proper continuant part at all timesop some susceptible populationc) and (has proper continuant part at all timesop some immune populationc)))
has super-classes
information content entityc
is aboutop some ecosystemc and (has proper continuant part at all timesop some biotic ecosystemc and (has proper continuant part at all timesop some exposed populationc) and (has proper continuant part at all timesop some contagious populationc) and (has proper continuant part at all timesop some susceptible populationc) and (has proper continuant part at all timesop some immune populationc))

Middle East respiratory syndrome coronavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1335626

has super-classes
Betacoronavirusc

migration speedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000442

has super-classes
rate measurement datumc

minimum eggs per oviposition sitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000471

has super-classes
epidemic simulator action specificationc

minimum seasonal latitudec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000275

has super-classes
seasonal function parameterc

minimum valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000432

has super-classes
data itemc

model numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000017

has super-classes
symbolc

monkeypoxc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_3292

has super-classes
infectious diseasec
has sub-classes
human monkeypoxc

Monkeypox virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10244

has super-classes
Orthopoxvirusc

Mononegaviralesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11157

has super-classes
ssRNA negative-strand virusc
has sub-classes
Filoviridaec, Paramyxoviridaec, Pneumoviridaec, Rhabdoviridaec

Moraxellaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_468

has super-classes
Pseudomonadalesc
has sub-classes
Acinetobacterc

Morbillivirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11229

has super-classes
Paramyxoviridaec
has sub-classes
Measles virusc

morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000051

has super-classes
physical object qualityc
has sub-classes
sizec, structurec

mortality datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000542

has super-classes
data setc
is aboutop some populationc
has sub-classes
excess mortality datasetc

mortality ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000445

has super-classes
rate measurement datumc

mosquito mating probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000450

has super-classes
probabilityc

movement speedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000444

has super-classes
rate measurement datumc

multi-organism processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0051704

has super-classes
biological processc
has sub-classes
entry into hostc

multicellular anatomical structurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0010000

has super-classes
anatomical structurec
has sub-classes
tissuec

multicellular organismal processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0032501

Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
has super-classes
biological processc
has sub-classes
behaviorc

multicellular organismal reproductive processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0048609

has super-classes
reproductive processc
has sub-classes
reproductive behaviorc

Mumps virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11161

has super-classes
Rubulavirusc

Murray Valley encephalitis virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11079

has super-classes
Japanese encephalitis virus groupc

Mus musculusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10090

has super-classes
Eukaryotac

Mycobacteriaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1762

has super-classes
Corynebacterialesc
has sub-classes
Mycobacteriumc

Mycobacteriumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1763

has super-classes
Mycobacteriaceaec
has sub-classes
Mycobacterium lepraec, Mycobacterium lepromatosisc, Mycobacterium tuberculosis complexc

Mycobacterium lepraec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1769

has super-classes
Mycobacteriumc

Mycobacterium lepromatosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_480418

has super-classes
Mycobacteriumc

Mycobacterium tuberculosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1773

has super-classes
Mycobacterium tuberculosis complexc

Mycobacterium tuberculosis complexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_77643

has super-classes
Mycobacteriumc
has sub-classes
Mycobacterium tuberculosisc

Nairoviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1980415

has super-classes
Bunyaviralesc
has sub-classes
Orthonairovirusc

name of a temporal boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000376

has super-classes
name of temporal regionc

name of temporal intervalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000242

has super-classes
name of temporal regionc
has partop some time unitc
has sub-classes
real date span category definitionc, real time span category definitionc

name of temporal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000395

has super-classes
identifierc
has sub-classes
datec, name of a temporal boundaryc, name of temporal intervalc

narrative objectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000006

has super-classes
information content entityc

nationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000003

has super-classes
Obsolete Classc

naturally-acquired active immune resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000301

has super-classes
immune resistance to infectionc

NCBI taxon identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000203

has super-classes
taxonomy identifierc

Neisseriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_482

has super-classes
Neisseriaceaec
has sub-classes
Neisseria gonorrhoeaec, Neisseria meningitidisc

Neisseria gonorrhoeaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_485

has super-classes
Neisseriac

Neisseria meningitidisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_487

has super-classes
Neisseriac

Neisseriaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_481

has super-classes
Neisserialesc
has sub-classes
Neisseriac

Neisserialesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_206351

has super-classes
Betaproteobacteriac
has sub-classes
Neisseriaceaec

Nematocerac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7148

has super-classes
Dipterac
has sub-classes
Culicomorphac

Nematodac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6231

has super-classes
Ecdysozoac
has sub-classes
Chromadoreac, Enopleac

Neognathaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_8825

has super-classes
Avesc
has sub-classes
Galloanseraec

Neopterac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33340

has super-classes
Pterygotac
has sub-classes
Endopterygotac

network modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000612

Date :
18T18:00:00/09/2022
The algorithm might involve also generating or creating the network structure in addition to operating on it.
has super-classes
algorithmc

news articlec back to ToC or Class ToC

IRI: http://purl.org/obo/owl/FBcv#FBcv_0000209

Originally imported into Apollo-SV for purpose of indexing in OBC.ide news articles relevant to infectious disease epidemiology.
has super-classes
documentc

Nidoviralesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_76804

has super-classes
ssRNA positive-strand viruses, no DNA stagec
has sub-classes
Coronaviridaec

Nipah henipavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_121791

has super-classes
Henipavirusc

non-parametric distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000321

Initially discussed at https://github.com/incf-nidash/nidm/pull/191
has super-classes
unconditional probability distributionc
has sub-classes
continuous nonparametric probability distributionc, discrete nonparametric probability distributionc

nongovernmental organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000393

Contributors :
Katrina Donovan
Examples: Internaltion Federation of Red Cross and Red Crescent Societies, Oxfam, CARE, Doctors Without Borders, World Wildlife Fund, Transparency International, Human Rights Watch, Amnesty International, and Save the Children.
has super-classes
geopoli organizationc

nonparametric probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000249

normal distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000036

has super-classes
continuous parametric probability distributionc

Norovirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_142786

has super-classes
Caliciviridaec

notes sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000634

has super-classes
document partc

number of artificially-infected vectors released per housec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000467

Class was originally created to correspond with an element from Apollo XSD v3.1.0.
has super-classes
vector control action specificationc

number of doses in a treatment coursec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000281

has super-classes
countc
is aboutop some treatmentc

number of Wolbachia-infected mosquitoes released per housec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000426

has super-classes
vector control action specificationc

numeralc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000029

has super-classes
symbolc
has sub-classes
integer numeralc, simulation identifier numeralc, simulation time step valuec, time step identifying numeralc

nursery school rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000059

has super-classes
school rolec

nursery school student populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000044

Key motivating use case was Synthia synthetic population data.
is equivalent to
collection of humansc and (has memberop only Homo sapiensc and (bearer ofop some student rolec) and (is enrolled in schoolop exactly 1 ))
has super-classes
school student populationc

nursery school student population censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000168

Motivating use case is Synthia synthetic population data.
is equivalent to
school student population censusc and (is aboutop some nursery school student populationc)
has super-classes
school student population censusc
is aboutop some nursery school student populationc

objectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000030

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
material entityc
has sub-classes
drug productc

object aggregatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000027

is defined by
http://purl.obolibrary.org/obo/bfo.owl
Definition: A material entity [snap:MaterialEntity] that is a mereological sum of separate object [snap:Object] entities and possesses non-connected boundaries.
has super-classes
material entityc
has sub-classes
PCO:collection of organismsc, aggregate of geographical entitiesc, aggregate of objectual organismsc, communityc, extended organismc, organism populationc, scattered molecular aggregatec

objective specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000005

has super-classes
directive information entityc
has sub-classes
census objective specificationc, data transformation objectivec, data visualization objective specificationc, disease surveillance objective specificationc, infectious disease control objective specificationc, infectious disease forecast objective specificationc, protect against effect of pathogenc, treatment preventable outcomec, vaccination preventable outcomec

obligatory ectosymbiotic commensalismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000350

Example: Basicladia algae and sea turtles
is equivalent to
ectosymbiotic commensalismc and (realizesop some functionc and ((proper part of continuant at all timesop some organismc) and (characteristic ofop some anatomical structurec)))
has super-classes
ectosymbiotic commensalismc
realizesop some functionc and ((proper part of continuant at all timesop some organismc) and (characteristic ofop some anatomical structurec))

obligatory ectosymbiotic mutualismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000353

Example: bees and flowers
is equivalent to
ectosymbiotic mutualismc and (realizesop some functionc and ((proper part of continuant at all timesop some organismc) and (characteristic ofop some anatomical structurec)))
has super-classes
ectosymbiotic mutualismc
realizesop some functionc and ((proper part of continuant at all timesop some organismc) and (characteristic ofop some anatomical structurec))

obligatory ectosymbiotic parasitismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000344

Example: European common cuckoo and other bird species (brood parasitism)
is equivalent to
ectosymbiotic parasitismc and (realizesop some functionc and ((proper part of continuant at all timesop some parasitec) and (characteristic ofop some anatomical structurec)))
has super-classes
ectosymbiotic parasitismc
realizesop some functionc and ((proper part of continuant at all timesop some parasitec) and (characteristic ofop some anatomical structurec))

obligatory ectosymbiotic parasitoidismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000347

Example: Mutillidae (family of wasps) and other wasps/ants
is equivalent to
ectosymbiotic parasitoidismc and (realizesop some functionc and ((proper part of continuant at all timesop some parasitoidc) and (characteristic ofop some anatomical structurec)))
has super-classes
ectosymbiotic parasitoidismc
realizesop some functionc and ((proper part of continuant at all timesop some parasitoidc) and (characteristic ofop some anatomical structurec))

obligatory endosymbiotic commensalismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000366

Example: Passalurus ambiguus (nematode) and rabbits
is equivalent to
endosymbiotic commensalismc and (realizesop some functionc and ((proper part of continuant at all timesop some organismc) and (characteristic ofop some anatomical structurec)))
has super-classes
endosymbiotic commensalismc
realizesop some functionc and ((proper part of continuant at all timesop some organismc) and (characteristic ofop some anatomical structurec))

obligatory endosymbiotic mutualismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000369

Example: marine worms of genus Riftia and their endosymbiotic bacteria
is equivalent to
endosymbiotic mutualismc and (realizesop some functionc and ((proper part of continuant at all timesop some organismc) and (characteristic ofop some anatomical structurec)))
has super-classes
endosymbiotic mutualismc
realizesop some functionc and ((proper part of continuant at all timesop some organismc) and (characteristic ofop some anatomical structurec))

obligatory endosymbiotic parasitismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000360

Example: Necator americanus (hookworm) and humans
is equivalent to
endosymbiotic parasitismc and (realizesop some functionc and ((proper part of continuant at all timesop some parasitec) and (characteristic ofop some anatomical structurec)))
has super-classes
endosymbiotic parasitismc
realizesop some functionc and ((proper part of continuant at all timesop some parasitec) and (characteristic ofop some anatomical structurec))

obligatory endosymbiotic parasitoidismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000363

Example: Ichneumon eumerus (wasp) and Phengaris rebeli (butterfly caterpillar)
is equivalent to
endosymbiotic parasitoidismc and (realizesop some functionc and ((proper part of continuant at all timesop some parasitoidc) and (characteristic ofop some anatomical structurec)))
has super-classes
endosymbiotic parasitoidismc
realizesop some functionc and ((proper part of continuant at all timesop some parasitoidc) and (characteristic ofop some anatomical structurec))

obo basic subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000018

has super-classes
ontology module subsetted by expressivityc

observation designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0300311

has super-classes
study designc

obsolescence reason specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000225

is equivalent to
{ failed exploratory term , placeholder removed , terms merged , term imported , term split }
{ failed exploratory term , placeholder removed , terms merged , term imported , term split , out of scope }
has super-classes
data about an ontology partc
has members
out of scopeni, term importedni, term splitni, terms mergedni

obsolete aggregate of dependenciesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000402

Examples: all the dependencies of the United States, all of the dependencies whose territory is located in the Carribean Sea, French Overseas Collectivities, Biritish Crown Dependencies.
has super-classes
aggregate of governmental organizationsc

obsolete aggregate of major administrative subdivisionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000403

Examples: all the major administrative subdivisions of the United States (which is different from the U.S. itself), all the major administrative subdivisions with a bicameral legislature, all the major administrative subdivisions with a judiciary, etc.
has super-classes
aggregate of governmental organizationsc

obsolete asymptomatic infection fractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000045

has super-classes
Obsolete Classc

obsolete carrying capacity per housec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000316

Obsolete Classc back to ToC or Class ToC

IRI: http://www.geneontology.org/formats/oboInOwl#ObsoleteClass

has sub-classes
deprecated discrete probability distributionc, deprecated log normal distributionc, geopolitical entityc, nationc, obsolete Reactive control measurec, obsolete asymptomatic infection fractionc, obsolete contaminationc, obsolete educational institutionc, obsolete immunec, obsolete school organizationc, obsolete simulation of population locationc, obsolete student rolec, obsolete2_binary digital entityc, obsolete2_binary executablec, obsolete2_digital documentc, obsolete2_digital entityc, obsolete2_report figurec, obsolete2_text based digital entityc, obsolete_artifactc, obsolete_digital qualityc, obsolete_establishing a CRID registryc, obsolete_identifierc, obsolete_material_entityc, obsolete_report elementc, obsolete_report tablec, obsolete_study interpretationc, obsolete_survival curvec, obsolete_unit of measurec, μc, σc

obsolete contaminationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000160

has super-classes
Obsolete Classc

obsolete educational institutionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000111

has super-classes
Obsolete Classc

obsolete group of governmental organizationsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000002

taken over by GEO_0000000401
is equivalent to
is aggregate ofop some geopoli organizationc or governmental organizationc
has super-classes
independent continuantc
is aggregate ofop some geopoli organizationc or governmental organizationc

obsolete immunec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000091

has super-classes
Obsolete Classc

obsolete multicellular organism reproductionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0032504

The reason for obsoletion is that this term is equivalent to multicellular organismal reproductive process.
has sub-classes
individual mosquito reproductionc

obsolete parametric probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000248

obsolete quarantine periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000297

obsolete Reactive control measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000129

has super-classes
Obsolete Classc

obsolete school organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000175

has super-classes
Obsolete Classc

obsolete sensitivity of treatment detectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/apollo_sv/dev/apollo_sv.owl#APOLLO_SV_00000003

Deprecated due to malformed URI and created anew.

obsolete simulation of population locationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000071

has super-classes
Obsolete Classc

obsolete specificity of case detectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/apollo_sv/dev/apollo_sv.owl#APOLLO_SV_00000001

deprecated due to malformed URI and created anew.

obsolete specificity of treatment detectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/apollo_sv/dev/apollo_sv.owl#APOLLO_SV_00000002

Deprecated due to malformed URI and created anew.

obsolete student rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000180

has super-classes
Obsolete Classc

obsolete unit of measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000096

obsolete vaccination efficacy measuredc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000192

obsolete2_binary digital entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000019

has super-classes
Obsolete Classc

obsolete2_binary executablec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000093

has super-classes
Obsolete Classc

obsolete2_digital documentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000105

has super-classes
Obsolete Classc

obsolete2_digital entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000012

has super-classes
Obsolete Classc

obsolete2_report figurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000059

has super-classes
Obsolete Classc

obsolete2_text based digital entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000047

has super-classes
Obsolete Classc

obsolete_artifactc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000008

has super-classes
Obsolete Classc

obsolete_digital qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000141

has super-classes
Obsolete Classc

obsolete_establishing a CRID registryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000576

has super-classes
Obsolete Classc

obsolete_identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000128

has super-classes
Obsolete Classc

obsolete_material_entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000018

has super-classes
Obsolete Classc

obsolete_report elementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000091

has super-classes
Obsolete Classc

obsolete_report tablec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000097

has super-classes
Obsolete Classc

obsolete_study interpretationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000035

has super-classes
Obsolete Classc

obsolete_survival curvec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000182

has super-classes
Obsolete Classc

obsolete_unit of measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000024

has super-classes
Obsolete Classc

occurrentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000003

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
entityc
part ofop only occurrentc
has sub-classes
processc, process boundaryc, spatiotemporal regionc, temporal regionc
is in domain of
causal relation between processesop, has part that occurs inop, has participantop, occupies temporal regionop, occurs inop, preceded byop, precedesop, temporal relationop
is in range of
causal relation between processesop, has temporal occupantop, participates inop, preceded byop, precedesop, temporal relationop
is disjoint with
continuantc

odor-baited trap control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000572

has super-classes
adult vector control strategyc

one dimensional cartesian spatial coordinate datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000401

has super-classes
cartesian spatial coordinate datumc
denotesop some zero-dimensional spatial regionc and (part ofop some one-dimensional spatial regionc)
has x coordinate valuedp exactly 1

one-dimensional continuant fiat boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000142

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
continuant fiat boundaryc
is disjoint with
two-dimensional continuant fiat boundaryc, zero-dimensional continuant fiat boundaryc

one-dimensional spatial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000026

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
spatial regionc
is disjoint with
three-dimensional spatial regionc

one-dimensional temporal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000038

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
temporal regionc
has sub-classes
epidemic intervalc
is disjoint with
zero-dimensional temporal regionc

one-way sensitivity analysis of a continuous variablec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000518

Class was originally created to correspond with a complex type from Apollo XSD v3.1.0.
has super-classes
data transformationc

ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000000

has super-classes
data about an ontology partc
has sub-classes
base ontology modulec, bridge ontology modulec, editors ontology modulec, generated ontology modulec, main release ontology modulec, reasoned ontology modulec, subset ontology modulec

ontology module subsetted by expressivityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000017

has super-classes
subset ontology modulec
has sub-classes
obo basic subset ontology modulec, ontology module subsetted by OWL profilec

ontology module subsetted by OWL profilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000019

has super-classes
ontology module subsetted by expressivityc
has sub-classes
EL++ ontology modulec

Onygenalesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33183

has super-classes
Eurotiomycetidaec
has sub-classes
Onygenales incertae sedisc

Onygenales incertae sedisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1593277

has super-classes
Onygenalesc
has sub-classes
Coccidioidesc

Opisthokontac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33154

has super-classes
Eukaryotac
has sub-classes
Fungic, Metazoac

opportunistic infectious dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000406

This includes individuals who are immunocompromised or who have damaged barriers that normally protect against infection (e.g. skin).
has super-classes
infectious dispositionc
(characteristic ofop some organismc) and (is realized byop only processc and (has partop some establishment of localization in hostc) and (has partop some transmission processc) and (has partop some appearance of disorderc and (not (occurs inop some immunocompetent organismc))))
is disjoint with
primary infectious dispositionc, zoonotic dispositionc, reverse zoonotic dispositionc, communicabilityc

opportunistic pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000654

is equivalent to
organismc and (has dispositionop some opportunistic infectious dispositionc)
has super-classes
infectious agentc
has dispositionop some opportunistic infectious dispositionc

ORCIDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000496

ORCID identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000708

has super-classes
centrally registered identifierc

organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100026

is equivalent to
Virusc or Bacteriac or Archaeac or Eukaryotac
has super-classes
material entityc
has sub-classes
Archaeac, Bacteriac, Eukaryotac, Virusc, contacted organismc, hostc, host organismc, immunocompetent organismc, infectious agentc, parasitec, parasitoidc, pathogenc, resistant organismc, susceptible organismc
is disjoint with
disorderc

organism populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000509

The organism population may be delineated by spatio-temporal proximity or by demographic criteria such as age.
has super-classes
object aggregatec

organism rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000049

is equivalent to
material entity rolec and (characteristic ofop some organismc)
has super-classes
material entity rolec
characteristic ofop some organismc
characteristic ofop only organismc
has sub-classes
Homo sapiens rolec, host rolec, organism social rolec, patient rolec

organism social rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000026

Defined class that we will ultimately move to an application ontology. We are leaving here for now until we determine which application ontology: it is likely going to be an ontology that does not currently (2012-06-05) exist. Ditto for its current descendants.
has super-classes
organism rolec
role in human social processesc
has sub-classes
human social rolec

organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000245

has super-classes
material entityc
has sub-classes
geopoli organizationc, governmental organizationc, hospital organizationc, school organizationc

organization health care rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000027

Previous definition: An organization social role played by an organization in health care processes.
has super-classes
organization social rolec
has sub-classes
health care provider organization rolec

organization rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000051

is equivalent to
rolec and (characteristic ofop some organizationc)
has super-classes
material entity rolec
characteristic ofop some organizationc
characteristic ofop only organizationc
has sub-classes
organization social rolec

organization social rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000025

Defined class that we will ultimately move to an application ontology. We are leaving here for now until we determine which application ontology: it is likely going to be an ontology that does not currently (2012-06-05) exist. Ditto for its current descendants.
has super-classes
organization rolec
role in human social processesc
has sub-classes
organization health care rolec, school rolec

Orthobunyavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11572

has super-classes
Peribunyaviridaec
has sub-classes
California encephalitis orthobunyavirusc, Guaroa orthobunyavirusc

Orthohepadnavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10405

has super-classes
Hepadnaviridaec
has sub-classes
Hepatitis B virusc

Orthohepevirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1678141

has super-classes
Hepeviridaec
has sub-classes
Orthohepevirus Ac

Orthohepevirus Ac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1678143

has super-classes
Orthohepevirusc
has sub-classes
Hepatitis E virusc

Orthomyxoviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11308

has super-classes
ssRNA negative-strand virusc
has sub-classes
Influenzavirus Ac, Influenzavirus Bc

Orthonairovirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1980517

has super-classes
Nairoviridaec
has sub-classes
Crimean-Congo hemorrhagic fever orthonairovirusc

Orthopoxvirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10242

has super-classes
Chordopoxvirinaec
has sub-classes
Monkeypox virusc, Variola virusc

Orthoretrovirinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_327045

has super-classes
Retroviridaec
has sub-classes
Lentivirusc

outpatient encounterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000099

has super-classes
health care encounterc

oviposition site censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000315

has super-classes
abiotic ecosystem censusc

Ovisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9935

has super-classes
Caprinaec
has sub-classes
Ovis ariesc

Ovis ariesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9940

has super-classes
Ovisc

ovisite carrying capacityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000479

has super-classes
calculated datumc

Panarthropodac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_88770

has super-classes
Ecdysozoac
has sub-classes
Arthropodac

Pancrustaceac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_197562

has super-classes
Mandibulatac
has sub-classes
Hexapodac

parameter estimation modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000611

Date :
18T17:51:00/09/2022
Examples of parameters estimated include R0, transmissibility, infectious period.
has super-classes
algorithmc

parametric probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000477

has super-classes
probability distributionc
has sub-classes
continuous parametric probability distributionc, discrete parametric probability distributionc

Paramyxoviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11158

has super-classes
Mononegaviralesc
has sub-classes
Henipavirusc, Morbillivirusc, Paramyxovirinaec, Rubulavirusc

Paramyxovirinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11159

has super-classes
Paramyxoviridaec

parasitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000373

has super-classes
organismc

parasitoidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000374

has super-classes
organismc

Pasteurellaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_712

has super-classes
Pasteurellalesc
has sub-classes
Haemophilusc

Pasteurellalesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_135625

has super-classes
Gammaproteobacteriac
has sub-classes
Pasteurellaceaec

patentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000313

has super-classes
documentc

pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000237

is equivalent to
organismc and (bearer ofop some infectiousnessc)
has super-classes
organismc
bearer ofop some infectiousnessc

pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000528

is equivalent to
material entityc and (has dispositionop some pathogenic dispositionc)
has super-classes
material entityc
has dispositionop some pathogenic dispositionc
has sub-classes
infectious agentc

pathogen evolution modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000544

has super-classes
simulation software applicationc

pathogenic dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000450

A pathogenic disposition is realized in processes that create a disorder.
has super-classes
dispositionc
(characteristic ofop some material entityc) and (is realized byop only processc and (results in formation ofop some disorderc))
has sub-classes
infectious dispositionc
is disjoint with
immunocompetencec, diseasec

pathogenicity designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001454

has super-classes
study designc

patient rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000011

In order to avoid the presumption of the formal structures and institutions of Western civilization, bearing a patient role does not entail that the organism presents at an official place of business, with an organization formally and legally registered with various gov't entities, with a person endowed by the gov't with certain certifications.
has super-classes
human health care rolec
organism rolec
has sub-classes
human patient rolec

patients sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000635

has super-classes
document partc
has partop some patients textual entityc

patients textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000636

has super-classes
textual entityc

PCO:collection of organismsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000000

May be of the same or different species.
has super-classes
object aggregatec
has sub-classes
collection of organisms of the same speciesc

Pecorac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_35500

has super-classes
Ruminantiac
has sub-classes
Bovidaec

Peptostreptococcaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186804

has super-classes
Clostridialesc
has sub-classes
Clostridioidesc

percentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000187

has super-classes
ratioc

Perdicinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_466544

has super-classes
Phasianidaec
has sub-classes
Coturnixc

Peribunyaviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1980416

has super-classes
Bunyaviralesc
has sub-classes
Orthobunyavirusc

Perissodactylac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9787

has super-classes
Laurasiatheriac
has sub-classes
Equidaec

personal namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020015

Personal names "today usually comprises a given name bestowed at birth or at a young age plus a surname. It is nearly universal for a human to have a name; except in rare cases, for example feral children growing up in isolation, or infants orphaned by natural disaster for whom no written record survives.[citation needed] The Convention on the Rights of the Child specifies that a child has the right from birth to a name. Certain isolated tribes, such as the Machiguenga of the Amazon, also lack personal names." (http://en.wikipedia.org/wiki/Personal_name)
is equivalent to
identifierc and (denotesop only Homo sapiensc)
has super-classes
identifierc
has sub-classes
given namec

Pezizomycotinac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_147538

has super-classes
saccharomycetac
has sub-classes
leotiomycetac

phagocytophilum groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_106179

has super-classes
Anaplasmac
has sub-classes
Anaplasma phagocytophilumc

Phasianidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9005

has super-classes
Galliformesc
has sub-classes
Meleagridinaec, Perdicinaec, Phasianinaec

Phasianinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9072

has super-classes
Phasianidaec
has sub-classes
Gallusc

phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000023

has super-classes
qualityc
has sub-classes
clinical phenotypec

Phlebovirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11584

has super-classes
Bunyaviridaec
has sub-classes
Rift Valley fever phlebovirusc

photographc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000185

has super-classes
imagec

photographic printc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000186

is equivalent to
material entityc and (bearer ofop some concretizesop some photographc)
has super-classes
material information bearerc
bearer ofop some concretizesop some photographc

phylogenetic tree constructorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000563

has super-classes
software applicationc

physical distancing infectious disease control measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000620

Contributors :
William R. Hogan
has super-classes
individual treatment control strategyc

physical object qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001241

Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles.
has super-classes
qualityc
has sub-classes
morphologyc, physical qualityc

physical qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001018

has super-classes
physical object qualityc
has sub-classes
distancec, environmental conditionc, massc, temperaturec

Picornaviralesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_464095

has super-classes
ssRNA positive-strand viruses, no DNA stagec
has sub-classes
Picornaviridaec

Picornaviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12058

has super-classes
Picornaviralesc
has sub-classes
Aphthovirusc, Enterovirusc, Hepatovirusc

place closure control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000229

has super-classes
infectious disease control strategyc
has sub-classes
close individual places independently strategyc, lockdown infectious disease control measurec, school closure control strategyc

place closure periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000287

has super-classes
durationc

plan specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000104

2/3/2009 Comment from OBI review. Action specification not well enough specified. Conditional specification not well enough specified. Question whether all plan specifications have objective specifications. Request that IAO either clarify these or change definitions not to use them
has super-classes
directive information entityc
has partop some objective specificationc
has partop some action specificationc
has sub-classes
Postal delivery routec, algorithmc, census plan specificationc, infectious disease control strategyc, programming languagec, schedulec, softwarec, study designc, treatment administration capacity schedulec

plane angle measurement unit labelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000789

has super-classes
measurement unit labelc
has members
angular degreeni, radni

planned processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000011

is equivalent to
realizesop some concretizesop some plan specificationc and (has partop some objective specificationc)
has super-classes
processc
realizesop some concretizesop some plan specificationc and (has partop some objective specificationc)
has sub-classes
assigning a centrally registered identifierc, associating information with a centrally registered identifier in its registryc, census takingc, countingc, creating a copyright licensec, data item extraction from journal articlec, data transformationc, database extract, transform, and load processc, dataset creatingc, disease surveillancec, documentingc, facility surveyc, health care encounterc, identifier creating processc, infectious disease control strategy executionc, infectious disease forecastc, investigationc, looking up a centrally registered identifierc, metagenomics analysisc, population surveyc, publishing processc, servicec, simulating of process of type Xc, social actc, software developmentc, software executionc, study design executionc, treatmentc, vaccine preparationc
is in domain of
has_specified_inputop, has_specified_outputop
is in range of
is_specified_output_ofop
is disjoint with
biological processc

Plasmodiidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1639119

has super-classes
Haemosporidac
has sub-classes
Plasmodiumc

Plasmodiumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5820

has super-classes
Plasmodiidaec
has sub-classes
Plasmodium (Laverania)c, Plasmodium (Plasmodium)c

Plasmodium (Laverania)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_418107

has super-classes
Plasmodiumc
has sub-classes
Plasmodium falciparumc

Plasmodium (Plasmodium)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_418103

has super-classes
Plasmodiumc
has sub-classes
Plasmodium malariaec, Plasmodium ovalec, Plasmodium vivaxc

Plasmodium falciparumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5833

has super-classes
Plasmodium (Laverania)c

Plasmodium malariaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5858

has super-classes
Plasmodium (Plasmodium)c

Plasmodium ovalec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_36330

has super-classes
Plasmodium (Plasmodium)c

Plasmodium vivaxc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5855

has super-classes
Plasmodium (Plasmodium)c

Platyhelminthesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6157

has super-classes
Bilateriac
has sub-classes
Trematodac

Pneumoviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11244

has super-classes
Mononegaviralesc
has sub-classes
Pneumovirusc

Pneumovirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11245

has super-classes
Pneumoviridaec
has sub-classes
Respiratory syncytial virusc

populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000001

It is sometimes difficult to define the physical boundaries of a population. In the case of sexually reproducing organisms, the individuals within a population have the potential to reproduce with one another during the course of their lifetimes. 'Community', as often used to describe a group of humans, is a type of population. Classes for population already exist in IDO ('organism population', IDO_0000509) and OBI ('population', OBI_0000181). The definitions should be standardized across ontologies and only one term used.
has super-classes
collection of organisms of the same speciesc
part of continuant at all timesop some biotic ecosystemc
has sub-classes
host populationc, target populationc

population and environment censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000188

Class was originally created to correspond with a complex type from Apollo XSD v3.1.0.
has super-classes
censusc
has sub-classes
agent level population and environment censusc

population censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000153

is equivalent to
censusc and (is aboutop some populationc) and (is_specified_output_ofop some population surveyc) and (is_specified_output_ofop only population surveyc)
has super-classes
censusc
is aboutop some populationc
is_specified_output_ofop some population surveyc
has sub-classes
hospital patient population censusc, population colonization censusc, school student population censusc

population colonization censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000501

has super-classes
population censusc

population countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000617

has super-classes
countc
has sub-classes
count of contacted populationc, count of contagious populationc, count of disease casesc, count of resistant populationc, count of simulated contagious populationc, count of simulated exposed populationc, count of simulated resistant populationc, count of simulated susceptible populationc, count of susceptible populationc, total disease casesc

population demographic censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000159

is equivalent to
censusc and (is_specified_output_ofop some population demographic surveyc) and (is_specified_output_ofop only population demographic surveyc)
has super-classes
censusc
is_specified_output_ofop some population demographic surveyc

population demographic surveyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000158

has super-classes
population surveyc

population density datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000619

Contributors :
William R. Hogan
has super-classes
scalar measurement datumc

population dynamics modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000540

has super-classes
simulation software applicationc

population immunity surveyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000003

Comment from Mike (to do!): I checked because an infection and immunity census would involve two different census methods. One would be some kind of disease surveillance that counts infections. The other is some kind of immunity census process based on seroprevalence studies or vaccination registries.
has super-classes
population surveyc

population infection and immunity censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000157

is equivalent to
censusc and ((is_specified_output_ofop some population immunity surveyc) and (is_specified_output_ofop some population infection surveyc)) and ((is_specified_output_ofop some population immunity surveyc) and (is_specified_output_ofop only population infection surveyc))
has super-classes
censusc
is_specified_output_ofop some population immunity surveyc
is_specified_output_ofop some population infection surveyc

population infection surveyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000155

Comment from Mike (to do!): I checked because an infection and immunity census would involve two different census methods. One would be some kind of disease surveillance that counts infections. The other is some kind of immunity census process based on seroprevalence studies or vaccination registries.
is equivalent to
population surveyc and (has partop some countingc and (has_specified_outputop some countc and (is aboutop some exposed populationc)) and (has_specified_outputop some countc and (is aboutop some contagious populationc)))
has super-classes
population surveyc
has partop some countingc and (has_specified_outputop some countc and (is aboutop some exposed populationc)) and (has_specified_outputop some countc and (is aboutop some contagious populationc))

population serology surveyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000396

has super-classes
population surveyc

population strata definitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000200

has super-classes
information content entityc

population surveyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000152

is equivalent to
planned processc and (has partop some countingc and (has_specified_outputop some countc and (is aboutop some populationc)))
has super-classes
planned processc
has partop some countingc and (has_specified_outputop some countc and (is aboutop some populationc))
has sub-classes
population demographic surveyc, population immunity surveyc, population infection surveyc, population serology surveyc

population treatment censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000187

has super-classes
censusc
has sub-classes
vaccination administration censusc

Porcine epidemic diarrhea virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_28295

has super-classes
Alphacoronavirusc

postal addressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000422

has super-classes
textual entityc

postal codec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000646

has super-classes
identifierc
has sub-classes
zone improvement plan codec

Postal delivery routec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000647

has super-classes
plan specificationc

potentially infectious contact data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000603

Date :
16T16:39:24Z/03/2021
Authors :
http://orcid.org/0000-0002-9881-1017
is equivalent to
data setc and (is aboutop some potentially infectious contactingc)
has super-classes
data setc
is aboutop some potentially infectious contactingc

potentially infectious contact rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000406

The organism bearing this role is the organism at risk for acquiring an infection when the role is realized. Also, this role differentiates participants in a process when there are two organisms participating, so it only begins to exist during its realization, justifying its existential restriction.
is equivalent to
rolec and (is realized byop some potentially infectious contactingc)
has super-classes
rolec
is realized byop some potentially infectious contactingc

potentially infectious contactingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000405

has super-classes
biological processc

potentially infectious sexual contactingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000515

has super-classes
sexual activityc

Powassan virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11083

has super-classes
tick-borne encephalitis virus groupc

Poxviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10240

has super-classes
dsDNA virus, no RNA stagec
has sub-classes
Chordopoxvirinaec

pre-publication history sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000637

has super-classes
document partc
has partop some pre-publication history textual entityc

pre-publication history textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000638

has super-classes
textual entityc

predationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000357

Example: lion and gazel
is equivalent to
transient agonismc and (has partop some bodily harmc and (has partop some life-death temporal boundaryc and (has participantop some organismc and (member ofop only Metazoac))))
has super-classes
transient agonismc
has partop some bodily harmc and (has partop some life-death temporal boundaryc and (has participantop some organismc and (member ofop only Metazoac)))

primary infectious dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000407

A pathogen with a primary infectious disposition can cause disease or death in both immunocompromised and immunocompetent hosts.
is equivalent to
infectious dispositionc and (is realized byop only processc and (has partop some establishment of localization in hostc) and (has partop some transmission processc) and (has partop some appearance of disorderc and (occurs inop some immunocompetent organismc)))
has super-classes
infectious dispositionc
is disjoint with
opportunistic infectious dispositionc, zoonotic dispositionc, reverse zoonotic dispositionc, communicabilityc

primary pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000530

is equivalent to
organismc and (has dispositionop some primary infectious dispositionc)
has super-classes
infectious agentc
has dispositionop some primary infectious dispositionc

primary school rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000060

has super-classes
school rolec

primary school student populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000062

Key motivating use case was Synthia synthetic population data.
is equivalent to
collection of humansc and (has memberop only Homo sapiensc and (bearer ofop some student rolec) and (is enrolled in schoolop exactly 1 ))
has super-classes
school student populationc

primary school student population censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000169

Motivating use case is Synthia synthetic population data.
is equivalent to
school student population censusc and (is aboutop some primary school student populationc)
has super-classes
school student population censusc
is aboutop some primary school student populationc

Primate lentivirus groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11652

has super-classes
Lentivirusc
has sub-classes
Human immunodeficiency virus 1c, Human immunodeficiency virus 2c

Primatesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9443

has super-classes
Euarchontogliresc
has sub-classes
Haplorrhinic

prioritization scheme for control measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000517

has super-classes
action specificationc

private governance organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000392

Contributors :
Katrina Donovan
Examples: private bond-rating agencies such as Moody's Investors Service, International Chamber of Commerce, Worldwide Responsible Apparel Manufacturing Principles, Forest Stewardship
has super-classes
geopoli organizationc

probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000470

The first criterion is derived from Kolmogorov's Probability Calculus, while the second is derived from Salmon's Admissibility and Applicability Criteria of Adequacy. Salmon's ascertainability criterion is subsumed by the definition for 'data item'.
has super-classes
data itemc
has sub-classes
affinity for buildingsc, conditional probabilityc, contamination probabilityc, mosquito mating probabilityc, probability of entry into a country is deniedc, probability of exit from a country is deniedc, shade affinityc, transmission probabilityc, vector bite probabilityc

probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000215

has super-classes
information content entityc
has sub-classes
conditional probability distributionc, discrete probability distributionc, joint probability distributionc, parametric probability distributionc, unconditional probability distributionc

probability of entry into a country is deniedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000278

has super-classes
probabilityc

probability of exit from a country is deniedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000279

has super-classes
probabilityc

probability of infection over timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000530

has super-classes
conditional probabilityc

processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000015

is defined by
http://purl.obolibrary.org/obo/bfo.owl
An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
has super-classes
occurrentc
has sub-classes
aggregate of disease coursesc, appearance of disorderc, biological processc, bodily benefitc, bodily harmc, bodily processc, disease coursec, disease outcomec, environmental system processc, fulminant periodc, gene product or complex activityc, health care processc, historyc, immunosuppressionc, incubation periodc, infection in ecosystemc, infectious periodc, latent periodc, life cycle temporal boundaryc, planned processc, process profilec, prodromal periodc, relapsec, transmission processc
is in domain of
has component processop, has end locationop, has inputop, has start locationop, history ofop, realizesop, regulated byop, regulatesop, regulates characteristicop
is in range of
capable ofop, causal relation between material entity and a processop, has component processop, has historyop, is duration ofop, is realized byop, realized in response toop, regulated byop, regulatesop
is disjoint with
temporal regionc, temporal regionc, spatiotemporal regionc, process boundaryc

process boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000035

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
occurrentc
is disjoint with
temporal regionc, temporal regionc, spatiotemporal regionc, processc

process profilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000144

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
processc
has sub-classes
infectiousness profilec
is disjoint with
historyc

processed materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000047

has super-classes
material entityc
has sub-classes
devicec, vaccinec

prodromal periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000455

has super-classes
processc

prodromal period durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000482

has super-classes
durationc

programming languagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000025

has super-classes
plan specificationc

prospective infectious disease forecastc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000584

has super-classes
infectious disease forecastc

prospective infectious disease nowcastc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000585

has super-classes
infectious disease nowcastc

protect against effect of pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000141

has super-classes
objective specificationc

Proteobacteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1224

has super-classes
Bacteriac
has sub-classes
Alphaproteobacteriac, Betaproteobacteriac, Gammaproteobacteriac, delta/epsilon subdivisionsc

Protostomiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33317

has super-classes
Bilateriac
has sub-classes
Ecdysozoac

pseudomallei groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_111527

has super-classes
Burkholderiac
has sub-classes
Burkholderia pseudomalleic

Pseudomonadalesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_72274

has super-classes
Gammaproteobacteriac
has sub-classes
Moraxellaceaec

Psoroptidiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_223472

has super-classes
Astigmatac
has sub-classes
Sarcoptoideac

Pterygotac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7496

has super-classes
Dicondyliac
has sub-classes
Neopterac

publicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000311

Revisit the term in Octorber 2020. Improve the defintion.
is equivalent to
documentc and (is_specified_output_ofop only publishing processc)
has super-classes
documentc
has sub-classes
journal articlec, publication about an investigationc

publication about an investigationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000312

has super-classes
publicationc
is aboutop some investigationc

publishing processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000444

has super-classes
planned processc

PubMed identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000495

has super-classes
identifierc

purely intentional entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000000

MB: Right now we represent 'purely intentional entities' as siblings to 'information content entities'. Given their nature I am not entirly sure that this is correct. It seems that both 'information content entity' and 'simulation' are subclass to 'purely intentional entity'.
has super-classes
generically dependent continuantc
has sub-classes
simulationc

PVC groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1783257

has super-classes
Bacteriac
has sub-classes
Chlamydiaec

qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000019

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
characteristicc
part ofop only qualityc
has sub-classes
biological sexc, bodily qualityc, infection incidencec, infection incidence proportionc, infection incidence ratec, infection prevalencec, infectious agent seroprevalencec, infectious agent transmissibilityc, infectious disease endemicityc, infectious disease incidencec, infectious disease incidence proportionc, infectious disease incidence ratec, infectious disease lifetime prevalencec, infectious disease mortality ratec, infectious disease prevalencec, infectious disease sporadicityc, infectivityc, information carrierc, phenotypec, physical object qualityc, relational qualityc, susceptibilityc, virulencec
is in range of
has basis inop, has qualityop, is quality measurement ofop
is disjoint with
realizablec

qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000001

has super-classes
characteristicc
is in range of
regulates characteristicop

quarantine control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000327

has super-classes
infectious disease control strategyc

quarantine periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000449

has super-classes
durationc

Rabies lyssavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11292

has super-classes
Lyssavirusc

radiusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002390

has super-classes
lengthc

random number seedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000148

rate measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001554

has super-classes
scalar measurement datumc
has sub-classes
age-dependent fecundity reductionc, leakage rate of Wolbachia infection in mosquito population infected with Wolbachiac, migration speedc, mortality ratec, movement speedc, rate of hydrological precipitationc, transmission coefficientc, transmission rate of pathogen to human from Wolbachia-infected mosquito bitesc

rate of hydrological precipitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000512

has super-classes
rate measurement datumc

rate unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000280

has super-classes
measurement unit labelc

ratioc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000190

has super-classes
dimensionless unitc
has sub-classes
fractionc, percentc

ratio of outdoor to indoor ovisitesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000446

has super-classes
data itemc

reactive control measure operatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000474

has super-classes
epidemic simulator action specificationc

reactive control strategy testc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000130

has super-classes
conditional specificationc

reactive control strategy thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000131

has super-classes
data itemc

reactive control strategy threshold unit of measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000295

has super-classes
unitc

real date span category definitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000386

has super-classes
name of temporal intervalc

real time span category definitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000385

has super-classes
name of temporal intervalc

realizablec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000017

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
characteristicc
part ofop only realizablec
has sub-classes
dispositionc, rolec
is in domain of
is realized byop, realized in response toop, realized in response to stimulusop
is in range of
realizesop
is disjoint with
qualityc

reasoned ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000013

has super-classes
ontology modulec

recovered organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000302

is equivalent to
organismc and (bearer ofop some naturally-acquired active immune resistancec)
has super-classes
immune organismc
bearer ofop some naturally-acquired active immune resistancec

recovered populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000163

has super-classes
host populationc

references sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000320

has super-classes
document partc
has partop some citationc

relapsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000105

has super-classes
processc

related work sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000639

has super-classes
document partc
has partop some related work textual entityc

related work textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000640

has super-classes
textual entityc

relational qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000145

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
qualityc

relative riskc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000245

has super-classes
effect size estimatec

Reoviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10880

has super-classes
dsRNA virusesc
has sub-classes
Sedoreovirinaec

reportc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000088

has super-classes
documentc
has sub-classes
journal articlec

reproductionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000651

is equivalent to
viral life cyclec or sexual reproductionc or asexual reproductionc
has super-classes
biological processc
has sub-classes
asexual reproductionc, colonizationc, individual mosquito reproductionc, infectionc, sexual reproductionc, viral life cyclec

reproduction numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000043

has super-classes
average valuec and (is aboutop some infection acquisitionc and (has participantop some organismc and (proper part of continuant at all timesop some populationc)))

reproductive behaviorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0019098

is equivalent to
behaviorc and multicellular organismal reproductive processc
has super-classes
behaviorc
multicellular organismal reproductive processc
has sub-classes
sexual activityc

reproductive processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0022414

has super-classes
biological processc
has sub-classes
asexual reproductionc, multicellular organismal reproductive processc, sexual reproductionc

requirements sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000641

has super-classes
document partc
has partop some requirements textual entityc

requirements textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000642

has super-classes
textual entityc

research participants sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000703

has super-classes
document partc

research settings sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000705

has super-classes
document partc

resistance to infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000145

has super-classes
dispositionc
has sub-classes
immune resistance to infectionc, resistance to malaria infectionc

resistance to malaria infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000336

has super-classes
resistance to infectionc

resistant organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000207

is equivalent to
organismc and (bearer ofop some resistance to infectionc)
has super-classes
organismc
bearer ofop some resistance to infectionc
has sub-classes
immune organismc

Respiratory syncytial virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12814

has super-classes
Pneumovirusc

Reston ebolavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186539

has super-classes
Ebolavirusc

results sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000318

has super-classes
document partc
is aboutop some study design executionc
has sub-classes
additional results sectionc

Retro-transcribing virusesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_35268

has super-classes
Virusc
has sub-classes
Hepadnaviridaec, Retroviridaec

Retroviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11632

has super-classes
Retro-transcribing virusesc
has sub-classes
Orthoretrovirinaec

reverse zoonotic dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000454

An infectious disease associated with an infectious agent that bears the reverse zoonotic disposition is referred to as a reverse zoonosis.
has super-classes
infectious dispositionc
is disjoint with
opportunistic infectious dispositionc, primary infectious dispositionc, zoonotic dispositionc, communicabilityc

Rhabditidac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6236

has super-classes
Chromadoreac
has sub-classes
Strongylidac

Rhabdoviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11270

has super-classes
Mononegaviralesc
has sub-classes
Lyssavirusc

Rhinovirus Ac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_147711

has super-classes
Enterovirusc

Rhizobialesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_356

has super-classes
Alphaproteobacteriac
has sub-classes
Brucellaceaec

Rickettsiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_780

has super-classes
Rickettsieaec
has sub-classes
spotted fever groupc, typhus groupc

Rickettsia prowazekiic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_782

has super-classes
typhus groupc

Rickettsia rickettsiic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_783

has super-classes
spotted fever groupc

Rickettsia typhic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_785

has super-classes
typhus groupc

Rickettsiaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_775

has super-classes
Rickettsialesc
has sub-classes
Rickettsieaec

Rickettsialesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_766

has super-classes
Alphaproteobacteriac
has sub-classes
Anaplasmataceaec, Rickettsiaceaec

Rickettsieaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33988

has super-classes
Rickettsiaceaec
has sub-classes
Rickettsiac

Rift Valley fever phlebovirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1933187

has super-classes
Phlebovirusc
has sub-classes
Rift Valley fever virusc

Rift Valley fever virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11588

has super-classes
Rift Valley fever phlebovirusc

ring diameter in metersc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000430

has super-classes
scalar value specificationc

ring individual treatment control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000409

has super-classes
individual treatment control strategyc

ring vaccination individual treatment control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000196

has super-classes
vaccination control strategyc

rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000023

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
realizablec
has sub-classes
antiviral drugc, author rolec, facultative rolec, material entity rolec, potentially infectious contact rolec
is in range of
has roleop
is disjoint with
dispositionc

role in human social processesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00002072

Contributors :
Mathias Brochhausen
Previous definition: A role played by an entity in human social processes.
has super-classes
material entity rolec
characteristic ofop only material entityc
has sub-classes
human health care rolec, organism social rolec, organization social rolec

Ross River virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11029

has super-classes
Alphavirusc

Rotavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10912

has super-classes
Sedoreovirinaec

Rubella virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11041

has super-classes
Rubivirusc

Rubivirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11040

has super-classes
Togaviridaec
has sub-classes
Rubella virusc

Rubulavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_39744

has super-classes
Paramyxoviridaec
has sub-classes
Mumps virusc

rulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000055

has super-classes
conditional specificationc
has sub-classes
control strategy reactive endpoint fractionc, infectious disease control strategy trigger definitionc

Ruminantiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9845

has super-classes
Cetartiodactylac
has sub-classes
Pecorac

running titlec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000329

has super-classes
document titlec

RxNorm drug concept identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000492

has super-classes
identifierc

Sabia mammarenavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_45709

has super-classes
Mammarenavirusc

saccharomycetac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_716545

has super-classes
Ascomycotac
has sub-classes
Pezizomycotinac, Saccharomycotinac

Saccharomycetalesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_4892

has super-classes
Saccharomycetesc
has sub-classes
Metschnikowiaceaec

Saccharomycetesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_4891

has super-classes
Saccharomycotinac
has sub-classes
Saccharomycetalesc

Saccharomycotinac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_147537

has super-classes
saccharomycetac
has sub-classes
Saccharomycetesc

Salmonellac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_590

has super-classes
Enterobacteriaceaec
has sub-classes
Salmonella bongoric, Salmonella entericac

Salmonella bongoric back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_54736

has super-classes
Salmonellac

Salmonella entericac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_28901

has super-classes
Salmonellac
has sub-classes
Salmonella enterica subsp. entericac

Salmonella enterica subsp. entericac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_59201

has super-classes
Salmonella entericac
has sub-classes
Salmonella enterica subsp. enterica serovar Paratyphi Ac, Salmonella enterica subsp. enterica serovar Typhic

Salmonella enterica subsp. enterica serovar Paratyphi Ac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_54388

has super-classes
Salmonella enterica subsp. entericac

Salmonella enterica subsp. enterica serovar Typhic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_90370

has super-classes
Salmonella enterica subsp. entericac

Sarcopterygiic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_8287

has super-classes
Euteleostomic
has sub-classes
Dipnotetrapodomorphac

Sarcoptesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_52282

has super-classes
Sarcoptinaec
has sub-classes
Sarcoptes scabieic

Sarcoptes scabieic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_52283

has super-classes
Sarcoptesc

Sarcoptidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_52281

has super-classes
Sarcoptoideac
has sub-classes
Sarcoptinaec

Sarcoptiformesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_83137

has super-classes
Acariformesc
has sub-classes
Astigmatac

Sarcoptinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_474019

has super-classes
Sarcoptidaec
has sub-classes
Sarcoptesc

Sarcoptoideac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_83158

has super-classes
Psoroptidiac
has sub-classes
Sarcoptidaec

SARS coronavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_227859

has super-classes
Betacoronavirusc

Sauriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32561

has super-classes
Sauropsidac
has sub-classes
Archelosauriac

Saurischiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_436489

has super-classes
Dinosauriac
has sub-classes
Theropodac

Sauropsidac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_8457

has super-classes
Amniotac
has sub-classes
Sauriac

scalar measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000032

has super-classes
measurement datumc
has measurement unit labelop min 1
has measurement valuedp min 1
has sub-classes
length measurement datumc, mass measurement datumc, population density datumc, rate measurement datumc, time measurement datumc
is in domain of
has measurement valuedp

scalar value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001931

has super-classes
value specificationc
has sub-classes
age range categoryc, epidemic peak weekc, epidemic start weekc, ring diameter in metersc

scale-free networkc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000527

has super-classes
graph of verticesc

scale-free network modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000526

has super-classes
algorithmc

scatter plotc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000184

has super-classes
graphc

scattered molecular aggregatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000576

has super-classes
object aggregatec

scenario datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000185

has super-classes
identifierc

schedulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000500

has super-classes
plan specificationc
has sub-classes
treatment supply schedulec

Schistosomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6181

has super-classes
Schistosomatidaec
has sub-classes
Schistosoma haematobiumc, Schistosoma mansonic

Schistosoma haematobiumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6185

has super-classes
Schistosomac

Schistosoma mansonic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6183

has super-classes
Schistosomac

Schistosomatidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_31245

has super-classes
Schistosomatoideac
has sub-classes
Schistosomac

Schistosomatoideac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_31244

has super-classes
Strigeididac
has sub-classes
Schistosomatidaec

Schizotrypanumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_47570

has super-classes
Trypanosomac
has sub-classes
Trypanosoma cruzic

school calendarc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000125

school closure control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000123

has super-classes
place closure control strategyc

school closure control strategy censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000605

Date :
16T16:44:03Z/03/2021
Authors :
http://orcid.org/0000-0002-9881-1017
This class represents datasets about strategies for school closure. Datasets about individual actual school closures go elsewhere.
is equivalent to
control strategy censusc and (is aboutop some school closure control strategyc)
has super-classes
control strategy censusc
is aboutop some school closure control strategyc

school closure durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000124

has super-classes
infectious disease control strategy action specificationc

school closure target facilitiesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000112

has super-classes
information content entityc
((part ofop some school closure control strategyc) and (part ofop some action specificationc)) and (is aboutop some school organizationc)

school facilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000064

is equivalent to
facilityc and ((is owned byop some school organizationc) or (is administered byop some school organizationc)) and (bearer ofop some school functionc)
has super-classes
facilityc
bearer ofop some school functionc

school facility censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000027

Motivating use case is Synthia synthetic population data.
is equivalent to
censusc and (is aboutop some school facilityc) and (is_specified_output_ofop some facility surveyc) and (is_specified_output_ofop only facility surveyc)
has super-classes
censusc
is aboutop some school facilityc
is_specified_output_ofop some facility surveyc

school functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000053

has super-classes
functionc

school organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000057

is equivalent to
organizationc and (bearer ofop some school rolec)
has super-classes
organizationc
bearer ofop some school rolec
is in range of
is enrolled in schoolop

school rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000055

has super-classes
organization social rolec
has sub-classes
nursery school rolec, primary school rolec, secondary school rolec

school student populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000178

Key motivating use case was Synthia synthetic population data.
is equivalent to
collection of humansc and (has memberop only Homo sapiensc and (bearer ofop some student rolec) and (is enrolled in schoolop exactly 1 school organizationc))
has super-classes
collection of humansc
has sub-classes
nursery school student populationc, primary school student populationc, secondary school student populationc

school student population censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000176

Motivating use case is Synthia synthetic population data.
is equivalent to
population censusc and (is aboutop some school student populationc)
has super-classes
population censusc
is aboutop some school student populationc
has sub-classes
nursery school student population censusc, primary school student population censusc, secondary school student population censusc

school transmission multiplierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000283

has super-classes
epidemic simulator action specificationc

seasonal function parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000273

has super-classes
information content entityc
has sub-classes
maximum seasonal latitudec, minimum seasonal latitudec, seasonal temporal offsetc

seasonal temporal offsetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000276

has super-classes
seasonal function parameterc

secondary school rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000065

has super-classes
school rolec

secondary school student populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000132

Key motivating use case was Synthia synthetic population data.
is equivalent to
collection of humansc and (has memberop only Homo sapiensc and (bearer ofop some student rolec) and (is enrolled in schoolop exactly 1 ))
has super-classes
school student populationc

secondary school student population censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000170

Motivating use case is Synthia synthetic population data.
is equivalent to
school student population censusc and (is aboutop some secondary school student populationc)
has super-classes
school student population censusc
is aboutop some secondary school student populationc

Sedoreovirinaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_689832

has super-classes
Reoviridaec
has sub-classes
Rotavirusc

seed infections into vector population control measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000478

Class was originally created to correspond with a complex type from Apollo XSD v3.1.0.
has super-classes
vector control strategyc

seed release intervalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000465

Class was originally created to correspond with an element from Apollo XSD v3.1.0.
has super-classes
vector control action specificationc
has sub-classes
Wolbachia release intervalc

seed sitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000464

Class was originally created to correspond with an element from Apollo XSD v3.1.0.
has super-classes
sitec
has sub-classes
Wolbachia release sitec

self-initiated travel avoidance behaviorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000546

has super-classes
individual human behaviorc

sensitivity of case detectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000277

has super-classes
true positive ratec

sensitivity of treatment detectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000383

has super-classes
true positive ratec

serial numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000131

has super-classes
symbolc

servicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001173

has super-classes
planned processc
has sub-classes
data servicec

setting datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000140

has super-classes
data itemc

sexual activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NBO_0000034

has super-classes
reproductive behaviorc
has sub-classes
potentially infectious sexual contactingc

sexual reproductionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0019953

Note that gametes may come from two organisms or from a single organism in the case of self-fertilizing hermaphrodites, e.g. C. elegans, or self-fertilization in plants. Note also that sexual reproduction may be seen as the regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times.
has super-classes
reproductionc
reproductive processc

SFV complexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_177875

has super-classes
Alphavirusc
has sub-classes
Chikungunya virusc

shade affinityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000443

has super-classes
probabilityc

Shigellac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_620

has super-classes
Enterobacteriaceaec
has sub-classes
Shigella dysenteriaec, Shigella flexneric, Shigella sonneic

Shigella dysenteriaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_622

has super-classes
Shigellac

Shigella flexneric back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_623

has super-classes
Shigellac

Shigella sonneic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_624

has super-classes
Shigellac

Simiiformesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_314293

has super-classes
Haplorrhinic
has sub-classes
Catarrhinic

Simplexvirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10294

has super-classes
Alphaherpesvirinaec
has sub-classes
Human alphaherpesvirus 1c, Human alphaherpesvirus 2c

simulated populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000031

is equivalent to
(simulatesop some PCO:collection of organismsc) and (participates inop some simulating of process of type Xc)
has super-classes
simulationc
simulatesop some PCO:collection of organismsc
participates inop some simulating of process of type Xc

simulated population location identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000039

has super-classes
identifierc

simulating of process of type Xc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000005

For example, in a simulated volcano eruption, representations of lava, lava tubes, vents, etc. take the place of actual lava, lava tubes, vents, etc. Even in the case of a simulated disaster scenario where actual ambulances, fire trucks, and people participate, representations of catastrophic events and injuries, etc. take the place of real ones.
has super-classes
planned processc

simulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000070

is equivalent to
purely intentional entityc and (simulatesop some entityc)
has super-classes
purely intentional entityc
simulatesop some entityc
has sub-classes
simulated populationc, simulation of antiviral control measurec, simulation of diseasec, simulation of organismc, simulation of time stepc, simulation of vaccination control measurec
is in domain of
simulatesop

simulation identifier numeralc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000065

Class was originally created to correspond with an element from Apollo XSD v3.1.0.
is equivalent to
numeralc and (denotesop some simulating of process of type Xc) and (is_specified_output_ofop only identifier creating processc)
has super-classes
numeralc
denotesop some simulating of process of type Xc

simulation of antiviral control measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000060

MB: For all the antiviral-related classes I referred to ChEBI: Antiviral class. I wasn't able to use the plug-in though (there was a JAVA heap space error, probably due to the size of ChEBI). AND (more importantly) I did not re-use any of the ChEBI hierarchy which, even in the BFO version is a mess. Maybe we need to discuss this.
has super-classes
simulationc

simulation of asymptomatic organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000074

is equivalent to
(simulatesop some asymptomatic hostc) and (participates inop some simulating of process of type Xc)
has super-classes
simulation of organismc
simulatesop some asymptomatic hostc

simulation of control measure participantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000063

is equivalent to
(simulatesop some organismc and (participates inop some infectious disease control strategy executionc)) and (participates inop some simulating of process of type Xc)
has super-classes
simulation of organismc
simulatesop some organismc and (participates inop some infectious disease control strategy executionc)

simulation of diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000042

has super-classes
simulationc
has partop some identifierc and (denotesop some diseasec)

simulation of exposed organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000038

has super-classes
simulation of organismc

simulation of infectious organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000040

has super-classes
simulation of organismc

simulation of organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000034

a simulation that is about an organism
is equivalent to
(simulationc and (simulatesop some organismc)) and (participates inop some simulating of process of type Xc)
has super-classes
simulationc
simulatesop some organismc
participates inop some simulating of process of type Xc
has sub-classes
simulation of asymptomatic organismc, simulation of control measure participantc, simulation of exposed organismc, simulation of infectious organismc, simulation of organism awaiting control measurec, simulation of organism awaiting effect of control measurec, simulation of recovered organismc, simulation of susceptible organismc, simulation of symptomatic organismc

simulation of organism awaiting control measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000053

MB: APOLLO_SV_00000053 and APOLLO_SV_00000058 have not been given a class restriction, since they are not expressible in BFO right now, due to their referring to "will". Both classes have been made disjoint in the OWL file, though.
has super-classes
simulation of organismc
is disjoint with
simulation of organism not awaiting control measurec

simulation of organism awaiting effect of control measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000059

has super-classes
simulation of organismc

simulation of organism not awaiting control measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000058

MB: APOLLO_SV_00000053 and APOLLO_SV_00000058 have not been given a class restriction, since they are not expressible in BFO right now, due to their referring to "will". Both classes have been made disjoint in the OWL file, though.
has super-classes
simulation of organismc and (not (participates inop some infectious disease control strategy executionc))
is disjoint with
simulation of organism awaiting control measurec

simulation of recovered organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000041

is equivalent to
(simulatesop some organismc and (not (bearer ofop some susceptibilityc))) and (participates inop some simulating of process of type Xc)
has super-classes
simulation of organismc
simulatesop some organismc and (not (bearer ofop some susceptibilityc))

simulation of susceptible organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000072

is equivalent to
(simulatesop some organismc and (bearer ofop some susceptibilityc)) and (participates inop some simulating of process of type Xc)
has super-classes
simulation of organismc
simulatesop some organismc and (bearer ofop some susceptibilityc)

simulation of symptomatic organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000073

has super-classes
simulation of organismc

simulation of time stepc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000066

has super-classes
simulationc
(simulationc and (simulatesop some one-dimensional temporal regionc)) and (participates inop only simulating of process of type Xc)

simulation of vaccination control measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000061

has super-classes
simulationc

simulation requester identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000006

Class was originally created to correspond with a complex type from Apollo XSD v3.1.0.
is equivalent to
identifierc and (denotesop some (Homo sapiensc or organizationc) and (commissionsop some simulating of process of type Xc))
has super-classes
identifierc
denotesop some (Homo sapiensc or organizationc) and (commissionsop some simulating of process of type Xc)

simulation run lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000015

has super-classes
epidemic simulator action specificationc
has partop some simulation time step action specificationc

simulation software applicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000007

has super-classes
software applicationc
has sub-classes
disease transmission model softwarec, infectious disease forecasterc, pathogen evolution modelc, population dynamics modelc

simulation time seriesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000064

MB: The ontological status of simulations (Thoughts) One property that seems to be common among simulations in comparison to many other fictions is the fact that the chronological order of the simulated purely intentional entities is not changed in the process of simulating. While in many pieces of fiction the order in which the purely intentional entities are created can vary, this is not the case for simulations.
has super-classes
time sampled measurement data setc

simulation time step action specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000068

simulation time step value simulation time step unit simulation run length The time step value and unit are specified using a scalar value specification.
has super-classes
epidemic simulator action specificationc
(part ofop some simulation software applicationc) and (is aboutop some simulation of time stepc) and (has value specificationop some scalar value specificationc)

simulation time step unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000014

has super-classes
time unitc

simulation time step valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000012

has super-classes
numeralc

simulator configurationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000179

has super-classes
epidemic simulator action specificationc
has partop some is aboutop some ecosystemc
has sub-classes
apollo simulator configurationc

simulator developer identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000009

is equivalent to
identifierc and (denotesop some (Homo sapiensc or organizationc) and (participates inop some software developmentc and (has_specified_outputop some simulation software applicationc)))
has super-classes
software developer identifierc
denotesop some (Homo sapiensc or organizationc) and (participates inop some software developmentc and (has_specified_outputop some simulation software applicationc))

simulator identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000010

is equivalent to
identifierc and (denotesop some simulation software applicationc)
has super-classes
software identifierc
part ofop some complete simulator identifierc
denotesop some simulation software applicationc

simulator time specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000183

has super-classes
epidemic simulator action specificationc
(has partop some simulation run lengthc) and (has partop some simulation time step action specificationc)

simulator version identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000013

has super-classes
identifierc
part ofop some complete simulator identifierc

single layer subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000009

has super-classes
subset ontology modulec

sitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000029

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
immaterial entityc
has sub-classes
seed sitec
is disjoint with
spatial regionc, spatial regionc, continuant fiat boundaryc

sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000117

has super-classes
morphologyc
has sub-classes
1-D extentc, 2-D extentc

SNOMED concept identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000469

has super-classes
identifierc

Snowshoe hare virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11580

has super-classes
California encephalitis orthobunyavirusc

social actc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021003

The phrase "in need of being perceived" does not imply that only planned processes that are in fact perceived can be social acts. Reinach clarifies that by exemplifying these matters for commands: "The command is according to its essence in need of being heard (vernehmungsbedürtig". It can of course happen that commands are given without being heard. Then they fail to fulfil their purpose. They are like thrown spears which fall to the ground without hitting their target." (A. Reinach: The Apriori Foundations of the Civil Law." Edited by J. Crosby, Heusenstamm: ontos Verlag, 2012). Reinach clearly does not imply that a command that does not fulfill its prupose would not be a command. Thanks to W.R. Hogan for finding the Reinach quote.
has super-classes
planned processc
has sub-classes
deontic declarationc

social interaction data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000547

has super-classes
data itemc

softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000010

has super-classes
plan specificationc
has sub-classes
compiled software codec, software applicationc, software libraryc, software methodc, software modulec, software scriptc, synthetic ecosystem constructorc

software applicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000594

has super-classes
softwarec
has sub-classes
computational modeling toolkitc, data format converterc, data format validatorc, data service softwarec, data visualizerc, disease transmission tree estimatorc, metagenomics analysis softwarec, phylogenetic tree constructorc, simulation software applicationc

software developer identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000105

is equivalent to
identifierc and (denotesop some (Homo sapiensc or organizationc) and (participates inop some software developmentc))
has super-classes
identifierc
denotesop some (Homo sapiensc or organizationc) and (participates inop some software developmentc)
has sub-classes
simulator developer identifierc

software developmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000008

is equivalent to
planned processc and (has_specified_outputop some softwarec or source code modulec)
has super-classes
planned processc
has_specified_outputop some softwarec or source code modulec
has sub-classes
compiling softwarec

software executionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIws_0000050

has super-classes
planned processc
has sub-classes
web service executionc

software identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000109

is equivalent to
identifierc and (denotesop some softwarec)
has super-classes
identifierc
part ofop some complete software identifierc
denotesop some softwarec
has sub-classes
simulator identifierc

software interpreterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000065

has super-classes
algorithmc

software libraryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000593

has super-classes
softwarec

software licensec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000535

has super-classes
copyright licensec

software license identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000538

has super-classes
identifierc

software license URLc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000539

has super-classes
unique resource locatorc

software license version identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000537

has super-classes
identifierc

software methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000591

has super-classes
softwarec

software modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000592

has super-classes
softwarec

software scriptc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000595

has super-classes
softwarec

software version identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000108

has super-classes
identifierc
part ofop some complete software identifierc

source code modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000096

has super-classes
directive information entityc

source code repositoryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000522

Refers to the stuff that lives on GitHub, not to GitHub or the git software on which it is based
has super-classes
data setc
documentc
has partop some source code modulec
has partop some data itemc and (is aboutop some source code modulec)

sovereign statec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000396

Per Wikipedia, the word 'nation' does not always refer to soverign states. For example, the "nation of Islam".
has super-classes
governmental organizationc
has sub-classes
de jure sovereign statec

spatial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000006

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
immaterial entityc
has sub-classes
one-dimensional spatial regionc, three-dimensional spatial regionc, two-dimensional spatial regionc, zero-dimensional spatial regionc
is in domain of
has spatial occupant at some timeop
is in range of
occupies spatial region at some timeop
is disjoint with
sitec, continuant fiat boundaryc, sitec, continuant fiat boundaryc

spatiotemporal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000011

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
occurrentc
is disjoint with
temporal regionc, temporal regionc, processc, process boundaryc

speciesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000121

has super-classes
TODOc

species of treated organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000460

has super-classes
taxonomy identifierc

species subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000012

has super-classes
subset ontology modulec

specificity of case detectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000381

has super-classes
true negative ratec

specificity of treatment detectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000382

has super-classes
true negative ratec

Spirochaetaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_137

has super-classes
Spirochaetalesc
has sub-classes
Treponemac

Spirochaetalesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_136

has super-classes
Spirochaetiac
has sub-classes
Borreliaceaec, Spirochaetaceaec

Spirochaetesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_203691

has super-classes
Bacteriac
has sub-classes
Spirochaetiac

Spirochaetiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_203692

has super-classes
Spirochaetesc
has sub-classes
Leptospiralesc, Spirochaetalesc

Spondweni virus groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_297696

has super-classes
Flavivirusc
has sub-classes
Zika virusc

spotted fever groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_114277

has super-classes
Rickettsiac
has sub-classes
Rickettsia rickettsiic

ssRNA negative-strand virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_35301

has super-classes
ssRNA virusc
has sub-classes
Arenaviridaec, Bunyaviralesc, Bunyaviridaec, Mononegaviralesc, Orthomyxoviridaec

ssRNA positive-strand viruses, no DNA stagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_35278

has super-classes
ssRNA virusc
has sub-classes
Caliciviridaec, Flaviviridaec, Hepeviridaec, Nidoviralesc, Picornaviralesc, Togaviridaec

ssRNA virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_439488

has super-classes
Virusc
has sub-classes
ssRNA negative-strand virusc, ssRNA positive-strand viruses, no DNA stagec

St. Louis encephalitis virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11080

has super-classes
Japanese encephalitis virus groupc

standard deviationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000448

has super-classes
data itemc

Staphylococcaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_90964

has super-classes
Bacillalesc
has sub-classes
Staphylococcusc

Staphylococcusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1279

has super-classes
Staphylococcaceaec
has sub-classes
Staphylococcus aureusc

Staphylococcus aureusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1280

has super-classes
Staphylococcusc

statistical analysis sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000644

has super-classes
document partc
has partop some statistical analysis textual entityc

statistical analysis textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000643

has super-classes
textual entityc

statistical confidencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000434

has super-classes
calculated datumc

Stegomyiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_53541

has super-classes
Aedesc
has sub-classes
Aedes aegyptic, Aedes albopictusc

Streptococcaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1300

has super-classes
Lactobacillalesc
has sub-classes
Streptococcusc

Streptococcusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1301

has super-classes
Streptococcaceaec
has sub-classes
Streptococcus pneumoniaec, Streptococcus sp. 'group A'c

Streptococcus pneumoniaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1313

has super-classes
Streptococcusc

Streptococcus sp. 'group A'c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_36470

has super-classes
Streptococcusc

Streptophytac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_35493

has super-classes
Viridiplantaec
has sub-classes
Streptophytinac

Streptophytinac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_131221

has super-classes
Streptophytac
has sub-classes
Embryophytac

Strigeididac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6180

has super-classes
Digeneac
has sub-classes
Schistosomatoideac

Strongylidac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6308

has super-classes
Rhabditidac
has sub-classes
Ancylostomatoideac

structurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000141

has super-classes
morphologyc
has sub-classes
in contact withc

student rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000058

has super-classes
human role within an organizationc and (is_specified_output_ofop some deontic declarationc and (process has causal agentop some school organizationc))

study bias sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000706

has super-classes
study limitations sectionc

study designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500000

has super-classes
plan specificationc
has sub-classes
disease state designc, environmental history designc, epidemic investigation designc, intervention designc, observation designc, pathogenicity designc, systematic review study designc, time series designc

study design executionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000471

has super-classes
planned processc
has sub-classes
vaccination efficacy study design executionc

study group population sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000088

has super-classes
countc

study limitations sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000631

has super-classes
document partc
has partop some study limitations textual entityc
is aboutop some study designc
has sub-classes
study bias sectionc

study limitations textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000632

has super-classes
textual entityc

subcontinental land massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000334

has super-classes
land massc
proper part of continuant at all timesop some continentc
has sub-classes
contiguous island land massc, contiguous land massc, islandc

subnational entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000004

is equivalent to
governmental organizationc and (is subordinate authority ofop some sovereign statec)
has super-classes
governmental organizationc
is subordinate authority ofop some sovereign statec
has sub-classes
geopolitical dependencyc, major administrative subdivisionc

subsetc back to ToC or Class ToC

IRI: http://www.geneontology.org/formats/oboInOwl#Subset

is equivalent to
{ core }
has super-classes
data about an ontology partc

subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000006

has super-classes
ontology modulec
has sub-classes
analysis subset ontology modulec, curation subset ontology modulec, exclusion subset ontology modulec, import ontology modulec, ontology module subsetted by expressivityc, single layer subset ontology modulec, species subset ontology modulec

Sudan ebolavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186540

has super-classes
Ebolavirusc

Suid herpesvirus 1c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10345

has super-classes
Varicellovirusc

Suidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9821

has super-classes
Suinac
has sub-classes
Susc

Suinac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_35497

has super-classes
Cetartiodactylac
has sub-classes
Suidaec

supplementary material to a documentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000326

has super-classes
document partc

supranational entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/geo.owl/GEO_000000399

e.g., the EU
has super-classes
governmental organizationc

Susc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9822

has super-classes
Suidaec
has sub-classes
Sus scrofac

Sus scrofac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9823

has super-classes
Susc

susceptibilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000172

is equivalent to
dispositionc and (is realized byop only infection acquisitionc) and (characteristic ofop only organismc and (not (host organismc)))
has super-classes
dispositionc

susceptibilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000467

Low susceptibility is often referred to as resistance. In this sense, resistance is a quality.
has super-classes
qualityc
characteristic ofop some material entityc
is disjoint with
infectious agent transmissibilityc, infectivityc, virulencec, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

susceptibility measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000149

has super-classes
measurement datumc
is aboutop some susceptibilityc

susceptible organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000205

is equivalent to
organismc and (bearer ofop some susceptibilityc)
has super-classes
organismc
bearer ofop some susceptibilityc

susceptible populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000234

is equivalent to
host populationc and (has memberop only organismc and (bearer ofop some susceptibilityc))
has super-classes
host populationc

Susceptible-Exposed-Infectious-Recovered modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000551

has super-classes
compartmental disease transmission modelc

Susceptible-Infected-Resistant modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000549

has super-classes
compartmental disease transmission modelc
has sub-classes
two-strain Susceptible-Infectious-Resistant modelc

Susceptible-Infected-Susceptible modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000548

has super-classes
compartmental disease transmission modelc

symbiosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000596

By "intimate interaction," we mean any interaction between two or more organisms that involves (1) physical contact or (2) multi-organism behavior in which all interacting organisms are participant.
has super-classes
biological process involved in interspecies interaction between organismsc
has sub-classes
ectosymbiosisc, endosymbiosisc

symbolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000028

has super-classes
information content entityc
has sub-classes
centrally registered identifier symbolc, lot numberc, model numberc, numeralc, serial numberc, version numberc

synthetic ecosystem constructorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000567

example: Synthia, SPEW
has super-classes
softwarec

synthetic ecosystem data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000528

The interactions between each organism as they move between these facilities may also be included in the data set.
has super-classes
data setc
is aboutop some ecosystemc

systematic review study designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001958

has super-classes
study designc

tablec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000306

has super-classes
textual entityc
has sub-classes
table of abbreviationsc, table of contentsc, table of figuresc

table of abbreviationsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000307

has super-classes
tablec

table of contentsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000327

has super-classes
tablec

table of figuresc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000328

has super-classes
tablec

tables sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000645

has super-classes
document partc
has partop some tablec

Tahyna virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_45270

has super-classes
California encephalitis orthobunyavirusc

Tai Forest ebolavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186541

has super-classes
Ebolavirusc

target populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000195

has super-classes
populationc

target population definitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000375

has super-classes
information content entityc

target populations and prioritizations informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000282

has super-classes
information content entityc

taxonomic bridge ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000016

has super-classes
bridge ontology modulec

taxonomy identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000509

has super-classes
identifierc
has sub-classes
NCBI taxon identifierc, clade namec, identifier for species of casec, identifier of species of diseased organismc, identifier of species of populationc, species of treated organismc

Teleostomic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_117570

has super-classes
Gnathostomatac
has sub-classes
Euteleostomic

temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000146

has super-classes
physical qualityc
has sub-classes
temperature of environmental materialc

temperature of airc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_09200001

has super-classes
temperature of environmental materialc
has sub-classes
air temperaturec

temperature of environmental materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_09200000

has super-classes
temperaturec
has sub-classes
temperature of airc

template generated ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000015

has super-classes
generated ontology modulec

temporal Bayesian networkc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000083

has super-classes
TODOc

temporal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000008

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
occurrentc
has sub-classes
one-dimensional temporal regionc, zero-dimensional temporal regionc
is in domain of
has temporal occupantop
is in range of
occupies temporal regionop
is disjoint with
spatiotemporal regionc, processc, process boundaryc, spatiotemporal regionc, processc, process boundaryc

temporal trigger definitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000271

has super-classes
infectious disease control strategy trigger definitionc

Terrabacteria groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1783272

has super-classes
Bacteriac
has sub-classes
Actinobacteria <phylum>c, Firmicutesc

Tetrapodac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32523

has super-classes
Dipnotetrapodomorphac
has sub-classes
Amniotac

textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000300

has super-classes
information content entityc
has sub-classes
abbreviation textual entityc, author information textual entityc, author summary textual entityc, availability textual entityc, captionc, case report textual entityc, citationc, conclusion textual entityc, conflict of interest textual entityc, consent textual entityc, descriptionc, document titlec, ethical approval textual entityc, funding source declaration textual entityc, future directions textual entityc, genome announcement textual entityc, hypothesis textual entityc, institutional identificationc, investigation descriptionc, keyword textual entityc, patients textual entityc, postal addressc, pre-publication history textual entityc, related work textual entityc, requirements textual entityc, statistical analysis textual entityc, study limitations textual entityc, tablec, written namec

Theriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32525

authority: Theria Parker & Haswell, 1897
has super-classes
Mammaliac
has sub-classes
Eutheriac

Theropodac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_436491

has super-classes
Saurischiac
has sub-classes
Coelurosauriac

Thiotrichalesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_72273

has super-classes
Gammaproteobacteriac
has sub-classes
Francisellaceaec

three dimensional cartesian spatial coordinate datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000403

has super-classes
cartesian spatial coordinate datumc
denotesop some zero-dimensional spatial regionc and (part ofop some three-dimensional spatial regionc)
has x coordinate valuedp exactly 1
has z coordinate valuedp exactly 1
has y coordinate valuedp exactly 1

three-dimensional spatial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000028

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
spatial regionc
is disjoint with
two-dimensional spatial regionc, zero-dimensional spatial regionc, one-dimensional spatial regionc

tick-borne encephalitis virus groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_29263

has super-classes
Flavivirusc
has sub-classes
Powassan virusc

time between vector bitesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000441

has super-classes
durationc

time delay of treatment detectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000291

has super-classes
durationc

time delay to case detectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000267

has super-classes
durationc

time measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000416

has super-classes
scalar measurement datumc
(has measurement unit labelop only time unitc) and (is duration ofop only processc)
has sub-classes
age in years datumc, durationc
is in domain of
is duration ofop
is in range of
has time stampop

time sampled measurement data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000584

has super-classes
data setc
has partop some time stamped measurement datumc
has sub-classes
simulation time seriesc

time scale namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000268

has super-classes
identifierc

time series designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500020

has super-classes
study designc

time since time scale zeroc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000272

has super-classes
durationc

time stamped measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000582

has super-classes
measurement datumc
(has time stampop some time measurement datumc) and (has measurement datumop some measurement datumc)
is in domain of
has measurement datumop, has time stampop

time step identifying numeralc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000069

is equivalent to
numeralc and (denotesop some simulation of time stepc) and (is_specified_output_ofop only identifier creating processc)
has super-classes
numeralc
denotesop some simulation of time stepc

time triggerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000034

has super-classes
conditional specificationc

time unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000003

has super-classes
measurement unit labelc
has sub-classes
simulation time step unitc
has members
weekni

tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000479

Editor note: changed label and definition to reflect CARO2
has super-classes
multicellular anatomical structurec

TODOc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00001008

has super-classes
entityc
has sub-classes
95% confidence intervalc, Bayesian credible intervalc, control strategy target populations and prioritizationc, inter-personal contact probabilityc, speciesc, temporal Bayesian networkc

Togaviridaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11018

has super-classes
ssRNA positive-strand viruses, no DNA stagec
has sub-classes
Alphavirusc, Rubivirusc

total disease casesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000569

is equivalent to
population countc and (is aboutop some organismc and (bearer ofop some diseasec)) and (is_specified_output_ofop some population infection surveyc)
has super-classes
population countc
is aboutop some organismc and (bearer ofop some diseasec)
is_specified_output_ofop some population infection surveyc

total fatal disease casesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000568

has super-classes
data itemc

transient agonismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000356

has super-classes
agonismc
has sub-classes
grazingc, predationc

transmission coefficientc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000191

has super-classes
rate measurement datumc

transmission probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000211

has super-classes
probabilityc

transmission processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/TRANS_0000000

has super-classes
processc
has sub-classes
horizontal pathogen transmission processc

transmission rate of pathogen to human from Wolbachia-infected mosquito bitesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000413

has super-classes
rate measurement datumc

transmission treec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000403

Because a set A is a subset of itself, we capture the possibility that all infected organisms in the epidemic are represented in the tree.
has super-classes
data representational modelc

travel recommendation control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000487

has super-classes
travel-related infectious disease control strategyc

travel restriction control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000231

has super-classes
travel-related infectious disease control strategyc

travel-related infectious disease control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000486

has super-classes
infectious disease control strategyc
has sub-classes
border control strategyc, travel recommendation control strategyc, travel restriction control strategyc

treatmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000090

Apollo-SV currently defines two subclasses of treatment. See vaccination and antiviral treatment.
has super-classes
planned processc
has sub-classes
drug treatmentc, vaccinationc

treatment administration capacity schedulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000212

has super-classes
plan specificationc

treatment contraindicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000378

has super-classes
contraindicationc

treatment facility censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000595

NOTE: this class counts the facilities themselves, not patients (people) in those facilities. For example, how many hospitals in a state. Not how many patients are in a hospital or hospitals in a state.
has super-classes
censusc and (has partop some countc and (is aboutop some facilityc))

treatment in the ICU control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000589

has super-classes
individual treatment control strategyc

treatment preventable outcomec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000290

has super-classes
objective specificationc

treatment supply schedulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000213

has super-classes
schedulec

treatment surveillance capabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000394

has super-classes
dispositionc

treatment surveillance trigger definitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000270

has super-classes
infectious disease control strategy trigger definitionc

treatment system logisticsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000393

has super-classes
information content entityc

Trematodac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6178

has super-classes
Platyhelminthesc
has sub-classes
Digeneac

Treponemac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_157

has super-classes
Spirochaetaceaec
has sub-classes
Treponema pallidumc

Treponema pallidumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_160

has super-classes
Treponemac
has sub-classes
Treponema pallidum subsp. pallidumc

Treponema pallidum subsp. pallidumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_161

has super-classes
Treponema pallidumc

triangular distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000081

has super-classes
continuous parametric probability distributionc

Trichinellac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6333

has super-classes
Trichinellidaec
has sub-classes
Trichinella britovic, Trichinella murrellic, Trichinella nativac, Trichinella nelsonic, Trichinella spiralisc

Trichinella britovic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_45882

has super-classes
Trichinellac

Trichinella murrellic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_144512

has super-classes
Trichinellac

Trichinella nativac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6335

has super-classes
Trichinellac

Trichinella nelsonic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6336

has super-classes
Trichinellac

Trichinella spiralisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6334

has super-classes
Trichinellac

Trichinellidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6332

has super-classes
Trichocephalidac
has sub-classes
Trichinellac

Trichocephalidac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6329

has super-classes
Dorylaimiac
has sub-classes
Trichinellidaec

true negative ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000134

has super-classes
measurement datumc
has sub-classes
specificity of case detectionc, specificity of treatment detectionc

true positive ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000233

has super-classes
measurement datumc
has sub-classes
sensitivity of case detectionc, sensitivity of treatment detectionc

Trypanosomac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5690

has super-classes
Trypanosomatidaec
has sub-classes
Schizotrypanumc

Trypanosoma cruzic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5693

has super-classes
Schizotrypanumc

Trypanosomatidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5654

has super-classes
Kinetoplastidac
has sub-classes
Trypanosomac

two dimensional cartesian spatial coordinate datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000402

has super-classes
cartesian spatial coordinate datumc
denotesop some zero-dimensional spatial regionc and (part ofop some two-dimensional spatial regionc)
has x coordinate valuedp exactly 1
has y coordinate valuedp exactly 1

two-dimensional continuant fiat boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000146

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
continuant fiat boundaryc
is disjoint with
one-dimensional continuant fiat boundaryc

two-dimensional spatial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000009

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
spatial regionc
is disjoint with
three-dimensional spatial regionc

two-strain Susceptible-Infectious-Resistant modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000553

has super-classes
Susceptible-Infected-Resistant modelc

typhus groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_114292

has super-classes
Rickettsiac
has sub-classes
Rickettsia prowazekiic, Rickettsia typhic

uncertain durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000379

has super-classes
durationc

unconditional probability distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000247

has super-classes
probability distributionc
has sub-classes
non-parametric distributionc

uniform distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000080

has super-classes
continuous parametric probability distributionc

unique resource locatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000019

has super-classes
identifierc
has sub-classes
software license URLc

unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000000

has super-classes
information content entityc
has sub-classes
individual treatment strategy administration capacity unit of measurec, individual treatment strategy supply schedule unit of measurec, reactive control strategy threshold unit of measurec

upper boundc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000447

has super-classes
information content entityc

vaccinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000142

is equivalent to
(realizesop some concretizesop some plan specificationc and (has partop some protect against effect of pathogenc)) and (has participantop some material entityc and (bearer ofop some vaccine functionc)) and (has participantop some organismc and (bearer ofop some susceptibilityc))
has super-classes
treatmentc
realizesop some concretizesop some plan specificationc and (has partop some protect against effect of pathogenc)
has participantop some material entityc and (bearer ofop some vaccine functionc)
has participantop some organismc and (bearer ofop some susceptibilityc)
has sub-classes
vaccination with nirsevimabc

vaccination administration capacityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000047

has super-classes
individual treatment control strategy action specificationc

vaccination administration censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000607

Date :
16T16:48:42Z/03/2021
Authors :
http://orcid.org/0000-0002-9881-1017
is equivalent to
population treatment censusc and (is aboutop some vaccinationc)
has super-classes
population treatment censusc
is aboutop some vaccinationc

vaccination compliancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000024

MB: This class is still awaiting its class restriction. It should be restricted as being about a population that has members that are eligible for a vaccination against the members that are eligible and consented the vaccination. There is a class "eligibility rule" in OBI (http://purl.obolibrary.org/obo/OBI_0500026), but it is restricted by definition to studies. I put in an issue in the OBI issue tracker. The consenting process and its specified outcome should be done in d-acts, but needs to be done properly.
has super-classes
calculated datumc

vaccination control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000136

has super-classes
individual treatment control strategyc
has sub-classes
ring vaccination individual treatment control strategyc

vaccination control strategy censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000606

Date :
16T16:47:09Z/03/2021
Authors :
http://orcid.org/0000-0002-9881-1017
This class is an inventory of vaccination control strategies, not vaccinations themselves. So it should be a list of things like "Publix vaccination plan", "Alachua county vaccination plan", "Sam's Club vaccination plan", etc. And not a list of individual vaccinations given to actual patients (see population vaccination census)
is equivalent to
control strategy censusc and (is aboutop some vaccination control strategyc)
has super-classes
control strategy censusc
is aboutop some vaccination control strategyc

vaccination coursec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000120

has super-classes
individual treatment control strategy action specificationc

vaccination dose schedulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000023

has super-classes
control strategy dose schedulec

vaccination efficacyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000025

Notes: 1. Apollo-SV does not distinguish between ‘vaccine efficacy’ and ‘vaccine effectiveness.’ 2. Apollo-SV also considers the use of ‘vaccine’ in both terms a misnomer
has super-classes
infectious disease treatment efficacyc

vaccination efficacy for simulator configurationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000214

has super-classes
information content entityc

vaccination efficacy inferredc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000193

has super-classes
data itemc

vaccination efficacy study design executionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000090

is equivalent to
study design executionc and (has partop some vaccinationc) and (has_specified_outputop some measured vaccination efficacyc)
has super-classes
study design executionc
has partop some vaccinationc
has_specified_outputop some measured vaccination efficacyc

vaccination identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000119

has super-classes
identifierc
denotesop some directive information entityc

vaccination preventable outcomec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000218

has super-classes
objective specificationc

vaccination reactive end point fractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000150

has super-classes
control strategy reactive endpoint fractionc

vaccination with nirsevimabc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000639

has super-classes
vaccinationc

vaccinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/VO_0000001

is equivalent to
processed materialc and (is_specified_output_ofop some vaccine preparationc) and (bearer ofop some vaccine functionc and (is realized byop some vaccinationc))
has super-classes
processed materialc
is_specified_output_ofop some vaccine preparationc
bearer ofop some vaccine functionc and (is realized byop some vaccinationc)

vaccine contraindicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/VO_0000207

has super-classes
contraindicationc

vaccine dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000143

replaced with VO 'vaccine function'

vaccine functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/VO_0000278

has super-classes
functionc

vaccine identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000117

has super-classes
identifierc
denotesop some material entityc

vaccine preparationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/VO_0000590

has super-classes
planned processc

vaccine supply schedulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000046

has super-classes
individual treatment control strategy action specificationc

vaccine valencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000137

has super-classes
countc

value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001933

has super-classes
information content entityc
has sub-classes
scalar value specificationc

variablec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000258

has super-classes
data itemc
has sub-classes
categorical variablec

Varicellovirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10319

has super-classes
Alphaherpesvirinaec
has sub-classes
Human herpesvirus 3c, Suid herpesvirus 1c

Variola virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10255

has super-classes
Orthopoxvirusc

vector bite probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000457

has super-classes
probabilityc

vector bite radiusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000440

has super-classes
length measurement datumc

vector control action specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000310

has super-classes
infectious disease control strategy action specificationc
has sub-classes
number of Wolbachia-infected mosquitoes released per housec, number of artificially-infected vectors released per housec, seed release intervalc, vector release site action specificationc

vector control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000308

Typically, the strategy is to limit the population of the second host species, which is called the "vector" for the infection.
is equivalent to
infectious disease control strategyc and (has partop some vector control action specificationc)
has super-classes
infectious disease control strategyc
has partop some vector control action specificationc
has sub-classes
Wolbachia vector control strategyc, adult vector control strategyc, container reduction vector control strategyc, indoor residual spraying vector control strategyc, larvicide control strategyc, seed infections into vector population control measurec

vector release site action specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000466

Class was originally created to correspond with an element from Apollo XSD v3.1.0.
has super-classes
vector control action specificationc
has sub-classes
Wolbachia every nth site release action specificationc

Venn diagramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000181

has super-classes
graphc

version numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000129

has super-classes
symbolc

Vertebratac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7742

authority: Vertebrata Cuvier, 1812
has super-classes
Craniatac
has sub-classes
Gnathostomatac

Vibrioc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_662

has super-classes
Vibrionaceaec
has sub-classes
Vibrio choleraec, Vibrio harveyi groupc, Vibrio vulnificusc

Vibrio choleraec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_666

has super-classes
Vibrioc
has sub-classes
Vibrio cholerae O1c

Vibrio cholerae O1c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_127906

has super-classes
Vibrio choleraec

Vibrio harveyi groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_717610

has super-classes
Vibrioc
has sub-classes
Vibrio parahaemolyticusc

Vibrio parahaemolyticusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_670

has super-classes
Vibrio harveyi groupc

Vibrio vulnificusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_672

has super-classes
Vibrioc

Vibrionaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_641

has super-classes
Vibrionalesc
has sub-classes
Vibrioc

Vibrionalesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_135623

has super-classes
Gammaproteobacteriac
has sub-classes
Vibrionaceaec

viral life cyclec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0019058

has super-classes
reproductionc
viral processc

viral processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0016032

See also the biological process terms 'viral infectious cycle ; GO:0019058' and 'lysogeny ; GO:0030069'.
has super-classes
biological processc
has sub-classes
viral life cyclec

Viridiplantaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33090

has super-classes
Eukaryotac
has sub-classes
Streptophytac

virulencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000466

This quality is measured by the proportion of clinically apparent cases that are severe or fatal.
has super-classes
qualityc
characteristic ofop some infectious agentc
is disjoint with
infectious agent transmissibilityc, infectivityc, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

Virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10239

has super-classes
organismc
has sub-classes
Deltavirusc, Retro-transcribing virusesc, dsDNA virus, no RNA stagec, dsRNA virusesc, ssRNA virusc

voluntary household quarantine control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000322

has super-classes
infectious disease control strategyc

wastewater disease surveillancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000616

Contributors :
William R. Hogan
See the CDC's explanation of wastewater surveillance, and how it uses the term 'wastewater' synonymously with 'sewage', here: https://www.cdc.gov/nwss/wastewater-surveillance.html.
has super-classes
disease surveillancec

wastewater surveillance data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000618

Contributors :
William R. Hogan
has super-classes
disease surveillance datac

water vapourc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000266

Perhaps a better relation between water vapour and water can be found in or added to RO?
has super-classes
gaseous environmental materialc
has sub-classes
atmospheric water vapourc

weatherc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001078

This class refers to all weather, including atmospheric and space weather. Please use a subclass for more specificity.
has super-classes
environmental variabilityc
has sub-classes
atmospheric weatherc

weather data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000614

Date :
18T18:34:00/09/2022
is equivalent to
data setc and (is aboutop some atmospheric weatherc and (characteristic ofop value atmosphere of the Earth))
has super-classes
data setc
is aboutop some atmospheric weatherc and (characteristic ofop value atmosphere of the Earth)

web service executionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIws_0000104

has super-classes
software executionc

websitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FBcv_0000667

has super-classes
documentc
has sub-classes
website with datac

website with datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000590

This class was created for use case for MIDAS Digital Repository to index websites that have useful data in them, albeit rarely as machine-interpretable, downloadable datasets. Much of the data are locked in PDF or other text-based formats.
is equivalent to
websitec and (has proper continuant part at all timesop some data itemc)
has super-classes
websitec
has proper continuant part at all timesop some data itemc

WEEV complexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_177874

has super-classes
Alphavirusc
has sub-classes
Western equine encephalitis virusc

Weibull Distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000256

has super-classes
continuous parametric probability distributionc

weighted arithmetic meanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000398

has super-classes
average valuec

West Nile virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11082

has super-classes
Japanese encephalitis virus groupc

Western equine encephalitis virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11039

has super-classes
WEEV complexc

Wolbachia effect on adult mortality rate in mosquito populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000419

has super-classes
biological process involved in interaction with hostc

Wolbachia effect on egg mortality rate in mosquito populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000418

has super-classes
biological process involved in interaction with hostc

Wolbachia effect on female fecundity in mosquito populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000421

has super-classes
biological process involved in interaction with hostc

Wolbachia effect on larval mortality rate in mosquito populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000420

has super-classes
biological process involved in interaction with hostc

Wolbachia effect on mating probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000431

has super-classes
epidemic simulator action specificationc

Wolbachia every nth site release action specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000411

has super-classes
vector release site action specificationc

Wolbachia prerelease adult vector control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000415

has super-classes
adult vector control strategyc

Wolbachia prerelease larvicide vector control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000416

has super-classes
larvicide control strategyc

Wolbachia release intervalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000423

has super-classes
seed release intervalc

Wolbachia release sitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000410

has super-classes
seed sitec

Wolbachia vector control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000390

has super-classes
vector control strategyc

workplace transmission multiplierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000285

has super-classes
epidemic simulator action specificationc

written namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000590

has super-classes
textual entityc
has sub-classes
author identificationc

Yellow fever virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11089

has super-classes
Yellow fever virus groupc

Yellow fever virus groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_40005

has super-classes
Flavivirusc
has sub-classes
Yellow fever virusc

Yersinia <bacteria>c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_629

has super-classes
Yersiniaceaec
has sub-classes
Yersinia enterocoliticac, Yersinia pseudotuberculosis complexc

Yersinia enterocoliticac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_630

has super-classes
Yersinia <bacteria>c

Yersinia pestisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_632

has super-classes
Yersinia pseudotuberculosis complexc

Yersinia pseudotuberculosis complexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1649845

has super-classes
Yersinia <bacteria>c
has sub-classes
Yersinia pestisc

Yersiniaceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1903411

has super-classes
Enterobacteralesc
has sub-classes
Yersinia <bacteria>c

Zaire ebolavirusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186538

has super-classes
Ebolavirusc

zero-dimensional continuant fiat boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000147

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
continuant fiat boundaryc
is disjoint with
one-dimensional continuant fiat boundaryc

zero-dimensional spatial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000018

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
spatial regionc
is disjoint with
three-dimensional spatial regionc

zero-dimensional temporal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000148

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
temporal regionc
is disjoint with
one-dimensional temporal regionc

Zika feverc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_0060478

has super-classes
infectious diseasec

Zika virusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_64320

has super-classes
Spondweni virus groupc

zone improvement plan codec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000648

has super-classes
postal codec

zoo-prophylaxis control strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000573

has super-classes
infectious disease control strategyc

zoonotic dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000453

An infectious disease associated with an infectious agent that bears the zoonotic disposition is referred to as a zoonosis.
has super-classes
infectious dispositionc
is disjoint with
opportunistic infectious dispositionc, primary infectious dispositionc, reverse zoonotic dispositionc, communicabilityc

μc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000076

has super-classes
Obsolete Classc

σc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000077

has super-classes
Obsolete Classc

Object Properties

2D boundary ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002000

is inverse of
has 2D boundaryop

achieves_planned_objectiveop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000417

has super-properties
top object propertyop

acts upstream ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002263

has super-properties
acts upstream of or withinop
has sub-properties
acts upstream of, negative effectop, acts upstream of, positive effectop, involved in regulation ofop
has sub-property chains
enablesop o causally upstream ofop

acts upstream of or withinop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002264

has super-properties
causal agent in processop
has sub-properties
acts upstream ofop, acts upstream of or within, negative effectop, acts upstream of or within, positive effectop, involved in or involved in regulation ofop
has sub-property chains
enablesop o causally upstream of or withinop

acts upstream of or within, negative effectop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004033

has super-properties
acts upstream of or withinop
has sub-properties
acts upstream of, negative effectop
has sub-property chains
enablesop o causally upstream of or within, negative effectop

acts upstream of or within, positive effectop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004032

has super-properties
acts upstream of or withinop
has sub-properties
acts upstream of, positive effectop
has sub-property chains
enablesop o causally upstream of or within, positive effectop

acts upstream of, negative effectop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004035

has super-properties
acts upstream ofop
acts upstream of or within, negative effectop
has sub-property chains
enablesop o causally upstream of, negative effectop

acts upstream of, positive effectop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004034

has super-properties
acts upstream ofop
acts upstream of or within, positive effectop
has sub-property chains
enablesop o causally upstream of, positive effectop

adjacent toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002220

has super-properties
spatially disjoint fromop
has domain
independent continuantc
has range
independent continuantc

basis ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000004

has super-properties
ObsoletePropertyop

bearer ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000053

has characteristics : inverse functional

has super-properties
top object propertyop
has sub-properties
has dispositionop, has functionop, has qualityop, has roleop
has range
characteristicc
is inverse of
characteristic ofop

bearer ofop back to ToC or Object Property ToC

IRI: http://www.obofoundry.org/ro/ro.owl#bearer_of

has super-properties
ObsoletePropertyop

capable ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002215

has super-properties
capable of part ofop
has sub-properties
enablesop
has domain
independent continuantc
has range
processc

capable of negatively regulatingop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002597

has super-properties
capable of regulatingop
has sub-property chains
capable ofop o negatively regulatesop

capable of part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002216

has super-properties
functionally related toop
causal agent in processop
has sub-properties
capable ofop
has sub-property chains
capable ofop o part ofop

capable of positively regulatingop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002598

has super-properties
capable of regulatingop
has sub-property chains
capable ofop o positively regulatesop

capable of regulatingop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002596

has super-properties
causal agent in processop
has sub-properties
capable of negatively regulatingop, capable of positively regulatingop
has sub-property chains
capable ofop o regulatesop

causal agent in processop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002500

has super-properties
causal relation between material entity and a processop
has sub-properties
acts upstream of or withinop, capable of part ofop, capable of regulatingop, involved in or involved in regulation ofop
is inverse of
process has causal agentop

causal relation between entitiesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002506

has super-properties
causally related toop
has sub-properties
causally influenced byop, causally influencesop
has domain
continuantc
has range
continuantc

causal relation between material entity and a processop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002595

has super-properties
causally related toop
has sub-properties
causal agent in processop, has part structure that is capable ofop
has domain
material entityc
has range
processc

causal relation between processesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002501

has super-properties
causally related toop
top object propertyop
has sub-properties
causally downstream ofop, causally downstream of or withinop, causally upstream ofop, causally upstream of or withinop
has domain
occurrentc
has range
occurrentc

causally downstream ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002404

has super-properties
preceded byop
causally downstream of or withinop
causal relation between processesop
has sub-properties
immediately causally downstream ofop
is inverse of
causally upstream ofop

causally downstream of or withinop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002427

has characteristics : transitive

has super-properties
causal relation between processesop
has sub-properties
causally downstream ofop, regulated byop
is inverse of
causally upstream of or withinop

causally influenced byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002559

has super-properties
causal relation between entitiesop
is inverse of
causally influencesop

causally influencesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002566

has super-properties
causal relation between entitiesop
has sub-properties
regulates activity ofop
has domain
continuantc
has range
continuantc
is inverse of
causally influenced byop
has sub-property chains
enablesop o causally upstream ofop o has inputop
enablesop o causally upstream ofop o enabled byop

causally related toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002410

has sub-properties
causal relation between entitiesop, causal relation between material entity and a processop, causal relation between processesop, process has causal agentop, realized in response toop, realized in response to stimulusop, regulates characteristicop

causally upstream ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002411

has characteristics : transitive

has super-properties
precedesop
causally upstream of or withinop
causal relation between processesop
has sub-properties
causally upstream of, negative effectop, causally upstream of, positive effectop, immediately causally upstream ofop, indirectly causally upstream ofop, regulatesop
is inverse of
causally downstream ofop

causally upstream of or withinop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002418

has characteristics : transitive

has super-properties
causal relation between processesop
has sub-properties
causally upstream ofop, causally upstream of or within, negative effectop, causally upstream of or within, positive effectop
is inverse of
causally downstream of or withinop

causally upstream of or within, negative effectop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004046

has super-properties
causally upstream of or withinop
has sub-properties
causally upstream of, negative effectop

causally upstream of or within, positive effectop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004047

has super-properties
causally upstream of or withinop
has sub-properties
causally upstream of, positive effectop

causally upstream of, negative effectop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002305

has super-properties
causally upstream ofop
causally upstream of or within, negative effectop
has sub-properties
negatively regulatesop

causally upstream of, positive effectop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002304

holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y
has super-properties
causally upstream ofop
causally upstream of or within, positive effectop
has sub-properties
positively regulatesop

causally_precedesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000116

has super-properties
ObsoletePropertyop

characteristic ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000052

Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.

has characteristics : functional

has super-properties
characteristic of part ofop
has sub-properties
disposition ofop, function ofop, quality ofop, role ofop
is inverse of
bearer ofop

characteristic of part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002314

has super-properties
depends onop
has sub-properties
characteristic ofop
has sub-property chains
characteristic ofop o part ofop
characteristic of part ofop o part ofop

colocalizes withop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002325

Authors :
Gene Ontology Consortium
has super-properties
mereotopologically related toop
top object propertyop
has domain
material entityc
has range
material entityc

commissionsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000037

has characteristics : asymmetric, irreflexive

has domain
Homo sapiensc or organizationc
has range
independent continuantc or processc or information content entityc

concretizesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000059

has super-properties
top object propertyop
has domain
characteristicc
has range
generically dependent continuantc
is inverse of
is concretized asop

contains processop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000067

is defined by
http://purl.obolibrary.org/obo/bfo.owl
Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant
has super-properties
top object propertyop
is inverse of
occurs inop

denoted byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000235

has domain
entityc
has range
information content entityc
is inverse of
denotesop

denotesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000219

has super-properties
is aboutop
has domain
information content entityc
has range
entityc
is inverse of
denoted byop

depends onop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002502

has sub-properties
characteristic of part ofop

DEPRECATED bearer ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004097

DEPRECATED inheres inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004096

DEPRECATED This relation is similar to but different in important respects to the characteristic-of relation. See comments on that relation for more information.

derives fromop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001000

is inverse of
derives intoop

derives intoop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001001

is inverse of
derives fromop

device utilizes materialop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0017001

has sub-property chains
capable ofop o has inputop

directly negatively regulated byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002023

has super-properties
directly regulated byop
is inverse of
directly negatively regulatesop

directly negatively regulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002630

has super-properties
negatively regulatesop
directly regulatesop
is inverse of
directly negatively regulated byop

directly negatively regulates activity ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002449

has super-properties
directly regulates activity ofop
has domain
material entityc
has range
material entityc
has sub-property chains
enablesop o directly negatively regulatesop o enabled byop

directly positively regulated byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002024

has super-properties
directly regulated byop
is inverse of
directly positively regulatesop

directly positively regulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002629

has super-properties
positively regulatesop
directly regulatesop
is inverse of
directly positively regulated byop

directly positively regulates activity ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002450

has super-properties
directly regulates activity ofop
has domain
material entityc
has range
material entityc
has sub-property chains
enablesop o directly positively regulatesop o enabled byop

directly regulated byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002022

Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
has super-properties
regulated byop
has sub-properties
directly negatively regulated byop, directly positively regulated byop
is inverse of
directly regulatesop

directly regulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002578

has super-properties
regulatesop
immediately causally upstream ofop
has sub-properties
directly negatively regulatesop, directly positively regulatesop
is inverse of
directly regulated byop

directly regulates activity ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002448

has super-properties
molecularly interacts withop
regulates activity ofop
has sub-properties
directly negatively regulates activity ofop, directly positively regulates activity ofop
has domain
material entityc
has range
material entityc
has sub-property chains
enablesop o regulatesop o enabled byop

disposition ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000092

This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
has super-properties
characteristic ofop
is inverse of
has dispositionop

during which endsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002084

Previously had ID http://purl.obolibrary.org/obo/RO_0002122 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range.
has super-properties
temporal relationop
is inverse of
ends duringop

during which existsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000157

has sub-properties
has temporal occupantop

enabled byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002333

has super-properties
has participantop
functionally related toop
is inverse of
enablesop

enablesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002327

has super-properties
capable ofop
is inverse of
enabled byop
has sub-property chains
enablesop o has partop
enablesop o has component activityop

enables subfunctionop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004031

has super-properties
functionally related toop
has sub-property chains
enablesop o has partop

endsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002229

has super-properties
part ofop
temporal relationop
is inverse of
ends withop

ends afterop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002086

X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)

has characteristics : transitive

has super-properties
temporal relationop
has sub-properties
preceded byop
has sub-property chains
ends duringop o preceded byop

ends duringop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002093

X ends_during Y iff: ((start(Y) before_or_simultaneous_with end(X)) AND end(X) before_or_simultaneous_with end(Y).
has super-properties
temporal relationop
is inverse of
during which endsop

ends withop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002230

has characteristics : transitive

has super-properties
has partop
temporal relationop
is inverse of
endsop

exists atop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000108

has sub-properties
occupies temporal regionop

function ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000079

This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
has super-properties
characteristic ofop
has domain
functionc
is inverse of
has functionop

functionally related toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002328

has sub-properties
capable of part ofop, enabled byop, enables subfunctionop, has part structure that is capable ofop, input ofop, involved in or involved in regulation ofop, is active inop, output ofop, part of structure that is capable ofop

generically depends onop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0010001

has domain
generically dependent continuantc
has range
independent continuantc
is inverse of
is carrier ofop
has sub-property chains
characteristic ofop o is concretized asop

has 2D boundaryop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002002

has domain
material entityc
has range
immaterial entityc
is inverse of
2D boundary ofop

has active participantop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002218

has super-properties
has participantop

has basis inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000543

The relationship between a disposition and the quality that confers the disposition on the material entity in which they both inhere. For example, the disposition of a piece of glass to bend light and the lattice structure of the glass (quality) that results in the bending of the light.
has domain
dispositionc
has range
qualityc

has componentop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002180

has super-properties
has partop
has sub-properties
has component processop

has component activityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002017

A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B.
has super-properties
has component processop
has sub-properties
has effector activityop, has regulatory component activityop

has component processop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002018

has super-properties
has componentop
has sub-properties
has component activityop
has domain
processc
has range
processc

has continuant part at all timesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000110

is defined by
http://purl.obolibrary.org/obo/bfo.owl

has characteristics : transitive

has super-properties
top object propertyop
has sub-properties
has proper continuant part at all timesop

has continuant part at all times that part existsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000187

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-properties
top object propertyop
is inverse of
proper part of continuant at all timesop

has coordinate unit labelop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000407

relating a cartesian spatial coordinate datum to a unit label that together with the values represent a point

has characteristics : functional

has super-properties
has partop
has domain
cartesian spatial coordinate datumc
has range
length unitc

has dispositionop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000091

has super-properties
bearer ofop
has domain
independent continuantc
has range
dispositionc
is inverse of
disposition ofop

has effector activityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002025

This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations.

has characteristics : functional

has super-properties
has component activityop

has end locationop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002232

has super-properties
has part that occurs inop
has domain
processc
has range
independent continuantc
has sub-property chains
ends withop o occurs inop

has functionop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000085

has super-properties
bearer ofop
has domain
independent continuantc
has range
functionc
is inverse of
function ofop

has historyop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000185

has domain
material entityc
has range
processc

has inputop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002233

has super-properties
has participantop
has domain
processc
is inverse of
input ofop
has sub-property chains
starts withop o has inputop

has jurisdiction inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000336

It is not intended to be maximal, in the sense that if a has_jurisdiction_in b, and b is not part of c, then a NOT has_jurisdiction_in c. in other words, it is perfectly fine to say: a disjoint b c has_jurisdiction_in a c has_jurisdiction_in b otherwise, we'd end up creating some mereological sum of all the islands, contiguous land masses, etc. of the United States, calling it "United States territory", asserting United States has_jurisdiction_in United States territory, then figuring out all the parts of that territory like islands, etc. We'd end up doing the same thing for every sovereign state, major administrative subdivision (at least those like Hawaii that are multiple), etc. Seems like an unnecessary duplication of entities.

has characteristics : asymmetric, irreflexive

has domain
governmental organizationc
has range
land massc

has material basis at all timesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000113

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-properties
top object propertyop

has measurement datumop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000583

has super-properties
has partop
has domain
time stamped measurement datumc
has range
measurement datumc and (not (time measurement datumc))

has measurement unit labelop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000039

has characteristics : functional

has super-properties
has partop
has range
measurement unit labelc

has memberop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002351

has characteristics : irreflexive

has super-properties
has partop
is inverse of
member ofop

has negative regulatory component activityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002014

By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'.
has super-properties
has regulatory component activityop
negatively regulated byop

has occurrent partop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000117

is defined by
http://purl.obolibrary.org/obo/bfo.owl

has characteristics : transitive

has super-properties
top object propertyop
has sub-properties
has proper occurrent partop, has temporal partop
is inverse of
part of occurrentop

has outputop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002234

has super-properties
has participantop
is inverse of
output ofop
has sub-property chains
ends withop o has outputop

has partop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000051

has characteristics : reflexive, transitive

has super-properties
overlapsop
top object propertyop
has sub-properties
ends withop, has componentop, has coordinate unit labelop, has measurement datumop, has measurement unit labelop, has memberop, has time stampop, starts withop
is inverse of
part ofop

has part structure that is capable ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002584

has super-properties
functionally related toop
causal relation between material entity and a processop
has sub-property chains
has partop o capable ofop

has part that occurs inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002479

has sub-properties
has end locationop, has start locationop
has domain
occurrentc
has range
independent continuantc
has sub-property chains
has partop o occurs inop

has participantop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000057

has super-properties
top object propertyop
has sub-properties
enabled byop, has active participantop, has inputop, has outputop, has_specified_inputop, has_specified_outputop
has domain
occurrentc
has range
continuantc
is inverse of
participates inop
has sub-property chains
has partop o realizesop o characteristic ofop
has partop o has participantop

has participant at all timesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000167

has positive regulatory component activityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002015

By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'.
has super-properties
has regulatory component activityop
positively regulated byop

has proper continuant part at all timesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000111

is defined by
http://purl.obolibrary.org/obo/bfo.owl

has characteristics : transitive

has super-properties
has continuant part at all timesop

has proper occurrent partop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000118

is defined by
http://purl.obolibrary.org/obo/bfo.owl

has characteristics : transitive

has super-properties
has occurrent partop
has sub-properties
has proper temporal partop

has proper temporal partop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000181

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-properties
has proper occurrent partop
has temporal partop

has qualityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000086

has super-properties
bearer ofop
has range
qualityc
is inverse of
quality ofop

has regulatory component activityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002013

has super-properties
has component activityop
regulated byop
has sub-properties
has negative regulatory component activityop, has positive regulatory component activityop

has roleop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000087

has super-properties
bearer ofop
has domain
independent continuantc
has range
rolec
is inverse of
role ofop

has spatial occupant at some timeop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000123

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has domain
spatial regionc
has range
independent continuantc
is inverse of
occupies spatial region at some timeop

has start locationop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002231

has super-properties
has part that occurs inop
has domain
processc
has range
independent continuantc
has sub-property chains
starts withop o occurs inop

has temporal occupantop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000156

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-properties
during which existsop
top object propertyop
has domain
temporal regionc
has range
occurrentc

has temporal partop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000121

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-properties
has occurrent partop
has sub-properties
has proper temporal partop

has time stampop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000581

has characteristics : functional

has super-properties
has partop
has domain
time stamped measurement datumc
has range
time measurement datumc

has value specificationop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001938

has super-properties
top object propertyop

has_specified_inputop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000293

has super-properties
has participantop
has domain
planned processc

has_specified_outputop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000299

has super-properties
has participantop
top object propertyop
has domain
planned processc
is inverse of
is_specified_output_ofop

helper property (not for use in curation)op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002464

has sub-properties
interaction relation helper propertyop

history ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000184

has super-properties
occurs inop
has domain
processc
has range
material entityc

immediately causally downstream ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002405

has super-properties
immediately preceded byop
causally downstream ofop
is inverse of
immediately causally upstream ofop

immediately causally upstream ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002412

has super-properties
immediately precedesop
causally upstream ofop
has sub-properties
directly regulatesop
is inverse of
immediately causally downstream ofop

immediately preceded byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002087

X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)
has super-properties
preceded byop
has sub-properties
immediately causally downstream ofop
is inverse of
immediately precedesop
has sub-property chains
starts withop o ends withop

immediately precedesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002090

X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)
has super-properties
precedesop
has sub-properties
immediately causally upstream ofop
is inverse of
immediately preceded byop
has sub-property chains
ends withop o starts withop

indirectly causally upstream ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0012011

has super-properties
causally upstream ofop
has sub-properties
indirectly regulatesop

indirectly negatively regulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002409

has characteristics : transitive

has super-properties
negatively regulatesop
indirectly regulatesop
has sub-property chains
indirectly negatively regulatesop o directly negatively regulatesop
directly negatively regulatesop o indirectly negatively regulatesop
directly negatively regulatesop o directly negatively regulatesop

indirectly positively regulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002407

has characteristics : transitive

has super-properties
positively regulatesop
indirectly regulatesop
has sub-property chains
indirectly positively regulatesop o directly positively regulatesop
indirectly negatively regulatesop o indirectly negatively regulatesop
directly positively regulatesop o indirectly positively regulatesop
directly positively regulatesop o directly positively regulatesop

indirectly regulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0012012

has super-properties
regulatesop
indirectly causally upstream ofop
has sub-properties
indirectly negatively regulatesop, indirectly positively regulatesop

inheres inop back to ToC or Object Property ToC

IRI: http://www.obofoundry.org/ro/ro.owl#inheres_in

has super-properties
ObsoletePropertyop

input ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002352

has super-properties
participates inop
functionally related toop
is inverse of
has inputop

instantiatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000057

Barry Smith, Waclaw Kusnierczyk, Daniel Schober, Werner Ceusters, “Towards a Reference Terminology for Ontology Research and Development in the Biomedical Domain”, O. Bodenreider, ed., Proceedings of KR-MED, 2006, 57-66. Also available online at: http://ceur-ws.org/Vol-222.

has characteristics : asymmetric, irreflexive

has domain
entityc

interaction relation helper propertyop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002563

has super-properties
helper property (not for use in curation)op
has sub-properties
molecular interaction relation helper propertyop

interacts withop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002434

has characteristics : symmetric

has sub-properties
molecularly interacts withop
has domain
material entityc
has range
material entityc

involved inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002331

has super-properties
participates inop
involved in or involved in regulation ofop
has sub-property chains
enablesop o part ofop
involved inop o part ofop

involved in negative regulation ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002430

has super-properties
involved in regulation ofop
has sub-property chains
enablesop o negatively regulatesop
involved inop o negatively regulatesop

involved in or involved in regulation ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002431

has super-properties
acts upstream of or withinop
functionally related toop
causal agent in processop
has sub-properties
involved inop, involved in regulation ofop

involved in positive regulation ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002429

has super-properties
involved in regulation ofop
has sub-property chains
enablesop o positively regulatesop
involved inop o positively regulatesop

involved in regulation ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002428

has super-properties
acts upstream ofop
involved in or involved in regulation ofop
has sub-properties
involved in negative regulation ofop, involved in positive regulation ofop
has sub-property chains
enablesop o regulatesop
involved inop o regulatesop

is aboutop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000136

has super-properties
top object propertyop
has sub-properties
denotesop, is duration ofop, is quality measurement ofop, is quality specification ofop, mentionsop
has domain
information content entityc

is active inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002432

has super-properties
overlapsop
functionally related toop
has sub-property chains
enablesop o occurs inop

is administered byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000068

is admitted to hospitalop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000071

has super-properties
top object propertyop
has domain
bearer ofop some patient rolec
has range
hospital organizationc

is aggregate ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000075

has super-properties
top object propertyop
is inverse of
is in aggregateop

is carrier ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0010002

has domain
independent continuantc
has range
generically dependent continuantc
is inverse of
generically depends onop
has sub-property chains
concretizesop o bearer ofop

is concretized asop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000058

has super-properties
top object propertyop
has domain
generically dependent continuantc
has range
characteristicc
is inverse of
concretizesop

is duration ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000413

has super-properties
is aboutop
has domain
time measurement datumc
has range
processc

is enrolled in schoolop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000070

has characteristics : asymmetric

has domain
bearer ofop some student rolec
has range
school organizationc

is in aggregateop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000328

is inverse of
is aggregate ofop

is kinase activityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002481

has super-properties
molecular interaction relation helper propertyop

is owned byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000735

has characteristics : asymmetric

is inverse of
ownsop

is owned byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000048

has super-properties
top object propertyop

is quality measured asop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000417

is inverse of
is quality measurement ofop

is quality measurement ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000221

has super-properties
is aboutop
has domain
measurement datumc
has range
qualityc
is inverse of
is quality measured asop

is quality specification ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000418

has super-properties
is aboutop
is inverse of
quality is specified asop

is realized byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000054

is defined by
http://purl.obolibrary.org/obo/bfo.owl
Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process
has super-properties
top object propertyop
has domain
realizablec
has range
processc
is inverse of
realizesop

is subordinate authority ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000329

'is subordinate authority of' Domain: governing organization Range: governing organization Formal properties: transitive, anti-symmetric, irreflexive Natural language definition: A governing organization G1 is subordinate to another governing organization G2 iff there is some authority possessed by G2 that is not possessed by G1 and G1 falls within the relevant jurisdiction of G2.

has characteristics : irreflexive

has domain
governmental organizationc
has range
governmental organizationc

is_specified_input_ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000295

has super-properties
participates inop

is_specified_output_ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000312

has super-properties
participates inop
has range
planned processc
is inverse of
has_specified_outputop

located inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001025

has characteristics : transitive

has domain
independent continuantc
independent continuantc and (not (spatial regionc))
has range
independent continuantc
independent continuantc and (not (spatial regionc))
is inverse of
location ofop
has sub-property chains
located inop o part ofop

location ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001015

has characteristics : transitive

is inverse of
located inop

location ofop back to ToC or Object Property ToC

IRI: http://www.obofoundry.org/ro/ro.owl#location_of

has super-properties
ObsoletePropertyop

member ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002350

has super-properties
part ofop
is inverse of
has memberop

mentioned byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000143

Date :
28T07:20:08Z/01/2022
is inverse of
mentionsop

mentionsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000142

has super-properties
is aboutop
is inverse of
mentioned byop

mereotopologically related toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002323

has sub-properties
colocalizes withop, overlapsop, spatially disjoint fromop

molecular interaction relation helper propertyop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002564

has super-properties
interaction relation helper propertyop
has sub-properties
is kinase activityop

molecularly interacts withop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002436

has characteristics : symmetric

has super-properties
interacts withop
has sub-properties
directly regulates activity ofop, phosphorylatesop

negatively regulated byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002335

has super-properties
regulated byop
has sub-properties
has negative regulatory component activityop
is inverse of
negatively regulatesop

negatively regulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002212

has super-properties
regulatesop
causally upstream of, negative effectop
top object propertyop
has sub-properties
directly negatively regulatesop, indirectly negatively regulatesop
is inverse of
negatively regulated byop
has sub-property chains
ends withop o negatively regulatesop

negatively regulates characteristicop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0019002

has super-properties
regulates characteristicop
has sub-property chains
negatively regulatesop o positively regulates characteristicop
positively regulatesop o negatively regulates characteristicop

negatively_regulatesop back to ToC or Object Property ToC

IRI: http://purl.org/obo/owl/OBO_REL#negatively_regulates

has super-properties
ObsoletePropertyop

o b i 0000308op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000308

has super-properties
ObsoletePropertyop

obsolete has proper partop back to ToC or Object Property ToC

IRI: http://www.obofoundry.org/ro/ro.owl#has_proper_part

has super-properties
ObsoletePropertyop

obsolete has_dispositionop back to ToC or Object Property ToC

IRI: http://purl.org/obo/owl/OBO_REL#has_disposition

has super-properties
ObsoletePropertyop

obsolete is based onop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000028

p is based on e, if p is a purely intentional entity, e is an entity and p assumption/simulation that e exists regardless of the truth of this assumption.
has super-properties
ObsoletePropertyop

obsolete_describesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000222

has super-properties
ObsoletePropertyop

obsolete_materially denotesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000220

has super-properties
ObsoletePropertyop

obsolete_realized_byop back to ToC or Object Property ToC

IRI: http://purl.org/obo/owl/OBO_REL#realized_by

NOTE: there appears to be some consistency in usage as to whether processes or continuants realize
has super-properties
ObsoletePropertyop

obsolete_representsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000223

has super-properties
ObsoletePropertyop

obsolete_specifically denotesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000135

has super-properties
ObsoletePropertyop

obsoleted_administrated byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000177

has super-properties
ObsoletePropertyop

ObsoletePropertyop back to ToC or Object Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty

has sub-properties
basis ofop, bearer ofop, causally_precedesop, inheres inop, location ofop, negatively_regulatesop, o b i 0000308op, obsolete has proper partop, obsolete has_dispositionop, obsolete is based onop, obsolete_describesop, obsolete_materially denotesop, obsolete_realized_byop, obsolete_representsop, obsolete_specifically denotesop, obsoleted_administrated byop, ownsop, proper part ofop, regulatesop

occupies spatial region at some timeop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000083

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has domain
independent continuantc
has range
spatial regionc
is inverse of
has spatial occupant at some timeop

occupies temporal regionop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000155

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-properties
exists atop
has domain
occurrentc
has range
temporal regionc

occurs inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000066

is defined by
http://purl.obolibrary.org/obo/bfo.owl
Example: oocyte axis determination : The establishment, maintenance and elaboration of an axis in the oocyte. This process unfolds_in the oocyte
has sub-properties
history ofop
has domain
occurrentc
has range
independent continuantc
is inverse of
contains processop
has sub-property chains
part ofop o occurs inop
occurs inop o part ofop

output ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002353

has super-properties
participates inop
functionally related toop
is inverse of
has outputop

overlapsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002131

has characteristics : symmetric

has super-properties
mereotopologically related toop
has sub-properties
has partop, is active inop, part ofop, spatially coextensive withop
has sub-property chains
part ofop o part ofop
has partop o part ofop
has partop o overlapsop
overlapsop o part ofop

ownsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000732

has characteristics : asymmetric

has super-properties
top object propertyop
is inverse of
is owned byop

ownsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000008

has super-properties
ObsoletePropertyop
top object propertyop

part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000050

has characteristics : reflexive, transitive

has super-properties
overlapsop
has sub-properties
endsop, member ofop, startsop
is inverse of
has partop

part of continuant at all timesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000177

is defined by
http://purl.obolibrary.org/obo/bfo.owl

has characteristics : reflexive, transitive

has super-properties
top object propertyop
has sub-properties
proper part of continuant at all timesop

part of occurrentop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000132

is defined by
http://purl.obolibrary.org/obo/bfo.owl

has characteristics : transitive

has super-properties
top object propertyop
has sub-properties
proper part of occurrentop, temporal part ofop
is inverse of
has occurrent partop

part of structure that is capable ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002329

has super-properties
functionally related toop
has sub-property chains
part ofop o capable ofop

participates inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000056

has super-properties
top object propertyop
has sub-properties
input ofop, involved inop, is_specified_input_ofop, is_specified_output_ofop, output ofop
has domain
continuantc
has range
occurrentc
is inverse of
has participantop

phosphorylatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002447

has super-properties
molecularly interacts withop

positively regulated byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002336

has super-properties
regulated byop
has sub-properties
has positive regulatory component activityop
is inverse of
positively regulatesop

positively regulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002213

has characteristics : transitive

has super-properties
regulatesop
causally upstream of, positive effectop
has sub-properties
directly positively regulatesop, indirectly positively regulatesop
is inverse of
positively regulated byop
has sub-property chains
negatively regulatesop o negatively regulatesop
ends withop o positively regulatesop

positively regulates characteristicop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0019001

has super-properties
regulates characteristicop
has sub-property chains
positively regulatesop o positively regulates characteristicop

preceded byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000062

has characteristics : transitive

has super-properties
ends afterop
top object propertyop
has sub-properties
causally downstream ofop, immediately preceded byop
has domain
occurrentc
has range
occurrentc
is inverse of
precedesop
has sub-property chains
part ofop o preceded byop

precedesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000063

has characteristics : transitive

has super-properties
temporal relationop
top object propertyop
has sub-properties
causally upstream ofop, immediately precedesop
has domain
occurrentc
has range
occurrentc
is inverse of
preceded byop
has sub-property chains
part ofop o precedesop

process has causal agentop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002608

has super-properties
causally related toop
is inverse of
causal agent in processop

produced byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0003001

has domain
material entityc
has range
material entityc
is inverse of
producesop

producesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0003000

Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue.
has domain
material entityc
has range
material entityc
is inverse of
produced byop
has sub-property chains
o has outputop

proper part ofop back to ToC or Object Property ToC

IRI: http://www.obofoundry.org/ro/ro.owl#proper_part_of

has super-properties
ObsoletePropertyop

proper part of continuant at all timesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000137

is defined by
http://purl.obolibrary.org/obo/bfo.owl

has characteristics : transitive

has super-properties
part of continuant at all timesop
is inverse of
has continuant part at all times that part existsop

proper part of occurrentop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000138

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-properties
part of occurrentop
has sub-properties
proper temporal part ofop

proper temporal part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000136

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-properties
proper part of occurrentop
temporal part ofop

quality is specified asop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000419

is inverse of
is quality specification ofop

quality ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000080

This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
has super-properties
characteristic ofop
is inverse of
has qualityop

realized in response toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0009501

has super-properties
causally related toop
has domain
realizablec
has range
processc
has sub-property chains
is realized byop o causally downstream ofop

realized in response to stimulusop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004028

has super-properties
causally related toop
has domain
realizablec
has range
material entityc
has sub-property chains
realized in response toop o has inputop

realizesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000055

is defined by
http://purl.obolibrary.org/obo/iao.owl
Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process
has domain
processc
has range
realizablec
is inverse of
is realized byop

regulated byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002334

has characteristics : transitive

has super-properties
causally downstream of or withinop
has sub-properties
directly regulated byop, has regulatory component activityop, negatively regulated byop, positively regulated byop
has domain
processc
has range
processc
is inverse of
regulatesop

regulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002211

has characteristics : transitive

has super-properties
causally upstream ofop
has sub-properties
directly regulatesop, indirectly regulatesop, negatively regulatesop, positively regulatesop
has domain
processc
has range
processc
is inverse of
regulated byop
has sub-property chains
regulatesop o has effector activityop
ends withop o regulatesop
directly regulatesop o directly regulatesop

regulatesop back to ToC or Object Property ToC

IRI: http://purl.org/obo/owl/OBO_REL#regulates

has super-properties
ObsoletePropertyop

regulates activity ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0011002

has super-properties
causally influencesop
has sub-properties
directly regulates activity ofop
has domain
material entityc
has range
material entityc

regulates characteristicop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0019000

has super-properties
causally related toop
has sub-properties
negatively regulates characteristicop, positively regulates characteristicop
has domain
processc
has range
qualityc
has sub-property chains
regulatesop o regulates characteristicop

results in formation ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002297

has super-properties
results_inop

results_inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000660

has sub-properties
results in formation ofop

role ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000081

This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
has super-properties
characteristic ofop
is inverse of
has roleop

simulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000067

has characteristics : asymmetric, irreflexive

has domain
simulationc
has range
entityc

spatially coextensive withop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002379

has super-properties
overlapsop
has sub-property chains
located inop o

spatially disjoint fromop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002163

has super-properties
mereotopologically related toop
top object propertyop
has sub-properties
adjacent toop

specifically depends on at some timeop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000169

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has domain
processc or characteristicc
has range
processc or characteristicc or (independent continuantc and (not (spatial regionc)))

startsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002223

has super-properties
part ofop
temporal relationop
is inverse of
starts withop

starts withop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002224

has characteristics : transitive

has super-properties
has partop
temporal relationop
is inverse of
startsop

temporal part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000139

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-properties
part of occurrentop
has sub-properties
proper temporal part ofop

temporal relationop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002222

A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations.
has super-properties
top object propertyop
has sub-properties
during which endsop, endsop, ends afterop, ends duringop, ends withop, precedesop, startsop, starts withop
has domain
occurrentc
has range
occurrentc

top object propertyop back to ToC or Object Property ToC

IRI: http://www.w3.org/2002/07/owl#topObjectProperty

A definition of "tranfers" object property can be found in d-acts: http:purl.obolibrary.org/iao/d-acts.owl
has sub-properties
achieves_planned_objectiveop, bearer ofop, causal relation between processesop, colocalizes withop, concretizesop, contains processop, has continuant part at all timesop, has continuant part at all times that part existsop, has material basis at all timesop, has occurrent partop, has partop, has participantop, has temporal occupantop, has value specificationop, has_specified_outputop, is aboutop, is admitted to hospitalop, is aggregate ofop, is concretized asop, is owned byop, is realized byop, negatively regulatesop, ownsop, ownsop, part of continuant at all timesop, part of occurrentop, participates inop, preceded byop, precedesop, spatially disjoint fromop, temporal relationop

Data Properties

has measurement valuedp back to ToC or Data Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000004

has characteristics : functional

has domain
scalar measurement datumc
has range
double

has x coordinate valuedp back to ToC or Data Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000404

has characteristics : functional

has domain
cartesian spatial coordinate datumc
has range
float

has y coordinate valuedp back to ToC or Data Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000406

has characteristics : functional

has domain
cartesian spatial coordinate datumc
has range
float

has z coordinate valuedp back to ToC or Data Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000405

has characteristics : functional

has domain
cartesian spatial coordinate datumc
has range
float

is expressed asdp back to ToC or Data Property ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000102

has domain
generically dependent continuantc

Named Individuals

angular degreeni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000790

belongs to
plane angle measurement unit labelc

atmosphere of the Earthni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000113

belongs to
atmospherec

coreni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000224

defined classni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000420

belongs to
denotator typec

example to be eventually removedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000002

belongs to
curation status specificationc

metadata completeni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000120

belongs to
curation status specificationc

metadata incompleteni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000123

belongs to
curation status specificationc

named class expressionni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000421

belongs to
denotator typec

obsolete_otherni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000230

organism population universalni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000035

organizational termni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000121

belongs to
curation status specificationc

out of scopeni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OMO_0001000

belongs to
obsolescence reason specificationc

pending final vettingni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000125

belongs to
curation status specificationc

radni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000791

Technically in the S.I. system it is a derived unit m•m^-1.
belongs to
plane angle measurement unit labelc

ready for releaseni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000122

belongs to
curation status specificationc

requires discussionni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000428

belongs to
curation status specificationc

square meterni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000080

"An area unit which is equal to an area enclosed by a square with sides each 1 meter long." [NIST:NIST]
belongs to
area unitc

square mileni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000796

An area unit which is equal to the area enclosed by a square in a flat plane which is one mile on every side.
belongs to
area unitc

term importedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000228

belongs to
obsolescence reason specificationc

term splitni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000229

belongs to
obsolescence reason specificationc

terms mergedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000227

belongs to
obsolescence reason specificationc

to be replaced with external ontology termni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000423

belongs to
curation status specificationc

uncuratedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000124

belongs to
curation status specificationc

universalni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000410

belongs to
denotator typec

weekni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/UO_0000034

"A time unit which is equal to 7 days." [Wikipedia:Wikipedia]
belongs to
time unitc

Annotation Properties

admin1 codeap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GEO_000035331

fipscode (subject to change to iso code), see exceptions below, see file admin1Codes.txt for display names of this code; varchar(20)

admin2 codeap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GEO_000035332

code for the second administrative division, a county in the US, see file admin2Codes.txt; varchar(80)

admin3 codeap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GEO_000035333

code for third level administrative division, varchar(20)

admin4 codeap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GEO_000035334

code for fourth level administrative division, varchar(20)

alternative labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000118

is defined by
http://purl.obolibrary.org/obo/iao.owl
Consider re-defing to: An alternative name for a class or property which can mean the same thing as the preferred name (semantically equivalent, narrow, broad or related).
has sub-properties
STATO alternative termap, has broad synonymap, has exact synonymap, has narrow synonymap, has related synonymap

antisymmetric propertyap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000427

has super-properties
logical characteristic of object propertyap

attribute slimap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/pato#attribute_slim

has super-properties
subset propertyap

author list <annotation>ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000329

an annotation property for capturing the list of authors on the publication or other document to which the entity to which the annotation is attached refers. That is, this annotation should be attached only to individuals that represent information content entities, and its values must denote the people that authored the ICE.

BFO CLIF specification labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000180

has super-properties
labelap

BFO OWL specification labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000179

has super-properties
labelap

bug databaseap back to ToC or Annotation Property ToC

IRI: http://usefulinc.com/ns/doap#bug-database

close matchap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2004/02/skos/core#closeMatch

commentap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#comment

has sub-properties
human readable synopsisap

common anatomyap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/uberon/core#common_anatomy

has super-properties
subset propertyap

contributorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/contributor

contributorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/contributor

coverageap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/coverage

created byap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/created_by

created byap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#created_by

creation dateap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/creation_date

creation dateap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#creation_date

Creatorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/creator

is defined by
http://purl.org/dc/elements/1.1/

creatorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/creator

curator noteap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000232

is defined by
http://purl.obolibrary.org/obo/iao.owl

database_cross_referenceap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasDbXref

dateap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/date

dc:typeap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/type

is defined by
http://purl.org/dc/elements/1.1/

defap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/def

default languageap back to ToC or Annotation Property ToC

IRI: http://protege.stanford.edu/plugins/owl/protege#defaultLanguage

default namespaceap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#default-namespace

defined by constructap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/OMO_0002000

Contributors :
https://orcid.org/0000-0002-7356-1779
https://orcid.org/0000-0002-8688-6599

definitionap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000115

is defined by
http://purl.obolibrary.org/obo/iao.owl

definition editorap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000117

is defined by
http://purl.obolibrary.org/obo/iao.owl

definition sourceap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000119

is defined by
http://purl.obolibrary.org/obo/iao.owl

descriptionap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/description

descriptionap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/description

eco subsetap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/ro/subsets#ro-eco

has super-properties
subset propertyap

editor noteap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000116

is defined by
http://purl.obolibrary.org/obo/iao.owl

editor preferred labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000111

is defined by
http://purl.obolibrary.org/obo/iao.owl

elucidationap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000600

is defined by
http://purl.obolibrary.org/obo/iao.owl

example of usageap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000112

is defined by
http://purl.obolibrary.org/obo/iao.owl

expand assertion toap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000425

expand expression toap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000424

external_definitionap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/UBPROP_0000001

first order logic expressionap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000426

formatap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/format

geonameidap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GEO_000035330

integer id of record in geonames database

gocheck do not annotateap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate

has super-properties
subset propertyap

goslim agrap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/go#goslim_agr

has super-properties
subset propertyap

goslim candidaap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/go#goslim_candida

has super-properties
subset propertyap

goslim chemblap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/go#goslim_chembl

has super-properties
subset propertyap

goslim drosophilaap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/go#goslim_drosophila

has super-properties
subset propertyap

goslim flybase ribbonap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon

has super-properties
subset propertyap

goslim genericap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/go#goslim_generic

has super-properties
subset propertyap

goslim metagenomicsap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/go#goslim_metagenomics

has super-properties
subset propertyap

goslim pirap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/go#goslim_pir

has super-properties
subset propertyap

goslim plantap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/go#goslim_plant

has super-properties
subset propertyap

goslim plant ribbonap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/go#goslim_plant_ribbon

has super-properties
subset propertyap

goslim pombeap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/go#goslim_pombe

has super-properties
subset propertyap

goslim virusap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/go#goslim_virus

has super-properties
subset propertyap

goslim yeastap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/go#goslim_yeast

has super-properties
subset propertyap

has associated axiom(fol)ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000602

is defined by
http://purl.obolibrary.org/obo/iao.owl

has associated axiom(nl)ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000601

is defined by
http://purl.obolibrary.org/obo/iao.owl

has axiom labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0010000

is defined by
http://purl.obolibrary.org/obo/iao.owl

has broad synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym

has super-properties
alternative labelap

has curation statusap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000114

has exact synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasExactSynonym

has super-properties
alternative labelap

has ID digit countap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000596

has ID policy forap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000598

has ID prefixap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000599

has ID range allocated toap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000597

has narrow synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym

has super-properties
alternative labelap

has o b o format versionap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion

has obsolescence reasonap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000231

has ontology root termap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000700

has related synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym

has super-properties
alternative labelap

has_alternative_idap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasAlternativeId

has_definitionap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasDefinition

has_obo_namespaceap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasOBONamespace

has_rankap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/ncbitaxon#has_rank

This is an abstract class for use with the NCBI taxonomy to name the depth of the node within the tree. The link between the node term and the rank is only visible if you are using an obo 1.3 aware browser/editor; otherwise this can be ignored

has_synonym_typeap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasSynonymType

hasURLap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/ERO_0000480

There are several URL and hasURL annotation properties out there in the ontology world. This one had the most sensible source ontology and OBO ID URI combination out there.

homepageap back to ToC or Annotation Property ToC

IRI: http://xmlns.com/foaf/0.1/homepage

homology_notesap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/UBPROP_0000003

human readable synopsisap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000523

has super-properties
commentap

idap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#id

identifierap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/identifier

imported fromap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000412

is defined by
http://purl.obolibrary.org/obo/iao.owl

in branchap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000113

in_subsetap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#inSubset

is a defining property chain axiomap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002581

is a defining property chain axiom where second argument is reflexiveap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002582

is allocated id rangeap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000603

Add as annotation triples in the granting ontology

is defined byap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#isDefinedBy

is denotator typeap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000411

is rule enabledap back to ToC or Annotation Property ToC

IRI: http://swrl.stanford.edu/ontologies/3.3/swrla.owl#isRuleEnabled

ISA alternative termap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001847

ISO 3166-1-alpha-2 codeap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000023

ISO 3166-1-alpha-3 codeap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000022

ISO 3166-2 codeap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000359

ISO Title Abbreviationap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000321

ISO Abbreviations are constructed at NLM to assist NCBI in linking from GenBank to PubMed.

ISSN Linkingap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000320

The linking ISSN is a single number assigned to all formats of a journal. The online and print versions of a journal, for example, are typically different. The linking ISSN refers to the journal regardless of format.

labelap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#label

has sub-properties
BFO CLIF specification labelap, BFO OWL specification labelap

languageap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/language

licenseap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/license

licenseap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/license

logical characteristic of object propertyap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/OMO_0001001

has sub-properties
antisymmetric propertyap

may be identical toap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0006011

Edges asserting this should be annotated with to record evidence supporting the assertion and its provenance.

mboxap back to ToC or Annotation Property ToC

IRI: http://xmlns.com/foaf/0.1/mbox

memberap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/member

mpath slimap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/pato#mpath_slim

has super-properties
subset propertyap

namespaceap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/namespace

NIAID GSCID-BRC alternative termap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001886

NLM IDap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000319

This identifier is the one that the National Library of Medicine uses to identify journals uniquely in PubMed.

NLM Title Abbreviationap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000324

The abbreviated journal title assigned by the National Library of Medicine. Typically, it's the ISO title abbreviation without periods.

OBO foundry unique labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000589

ontology IUIap back to ToC or Annotation Property ToC

IRI: http://www.referent-tracking.com/RTS_00000001

ontology term requesterap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000234

The 'term requester' can credit the person, organization or project who request the ontology term.

ontology version IUIap back to ToC or Annotation Property ToC

IRI: http://www.referent-tracking.com/RTS_00000002

pageap back to ToC or Annotation Property ToC

IRI: http://xmlns.com/foaf/0.1/page

Proposed Apollo Location Codeap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000358

publisherap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/publisher

r o 0002175ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002175

r o 0002259ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002259

has super-properties
subset propertyap

r o 0002575ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002575

r o 0002579ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002579

r o 0004049ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004049

r o 0004050ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004050

r o 0040042ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0040042

relationap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/relation

retired from use as ofap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000604

rightsap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/rights

s t a t o 0000041ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000041

s t a t o 0000391ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000391

scalar slimap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/pato#scalar_slim

has super-properties
subset propertyap

scheduled for obsoletion on or afterap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0006012

has range
date time

see alsoap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#seeAlso

shorthandap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#shorthand

Sourceap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/source

is defined by
http://purl.org/dc/elements/1.1/

sourceap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/source

sourceap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#source

source code repository URLap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000488

This annotation is intended for annotating instances of software application, software module, ontology (artifact), etc. with a uniform resource locator that points to the source code version control repository where they are managed. Note that for OWL individuals that reference a particular version of the software or ontology, this URL should point to the place in the repository where that version is located, rather than the general main page of the repository.

STATO alternative termap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000032

has super-properties
alternative labelap

subjectap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/subject

subset propertyap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#SubsetProperty

has sub-properties
attribute slimap, common anatomyap, eco subsetap, gocheck do not annotateap, goslim agrap, goslim candidaap, goslim chemblap, goslim drosophilaap, goslim flybase ribbonap, goslim genericap, goslim metagenomicsap, goslim pirap, goslim plantap, goslim plant ribbonap, goslim pombeap, goslim virusap, goslim yeastap, mpath slimap, r o 0002259ap, scalar slimap, unit group slimap, upper levelap, valid for go annotation extensionap, valid for go gp2termap, valid for go ontologyap, valid for gocamap

t v plap back to ToC or Annotation Property ToC

IRI: http://attempto.ifi.uzh.ch/ace_lexicon#TV_pl

t v sgap back to ToC or Annotation Property ToC

IRI: http://attempto.ifi.uzh.ch/ace_lexicon#TV_sg

t v vbgap back to ToC or Annotation Property ToC

IRI: http://attempto.ifi.uzh.ch/ace_lexicon#TV_vbg

temporal interpretationap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001900

term replaced byap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0100001

Add as annotation triples in the granting ontology

term tracker itemap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000233

The 'tracker item' can associate a tracker with a specific ontology term.

titleap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/title

titleap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/title

uberon slimap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/uberon/core#uberon_slim

UN Numerical Codeap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000021

Unique Apollo Labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/apollo_sv.owl/APOLLO_SV_0000040

unit group slimap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/uo#unit_group_slim

has super-properties
subset propertyap

upper levelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/uberon/core#upper_level

has super-properties
subset propertyap

URI creation dateap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000325

This is the date that you created the URI that represents something, NOT the date that the thing referenced by the URI was created. For example, if you create a URI on 2014-09-24 to represent a book published on 1982-10-17, then this annotation property should have the value 2014-09-24. In other words, this annotation refers to the representation, not the represented thing. For the 1982-10-17 date, we suggest the dc:created annotation.

US State Ens Identifierap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000011

US State Two Digit Identifierap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000009

US State Two Letter Abbreviationap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000010

valid for go annotation extensionap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension

has super-properties
subset propertyap

valid for go gp2termap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/valid_for_go_gp2term

has super-properties
subset propertyap

valid for go ontologyap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/valid_for_go_ontology

has super-properties
subset propertyap

valid for gocamap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/valid_for_gocam

has super-properties
subset propertyap

vertebrate coreap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/uberon/core#vertebrate_core

General Axioms

General Subclass Definition back to ToC

causally influencesop some material entityc is subclass of

(participates inop some causally upstream of or withinop some processc) or (capable ofop some participates inop some causally upstream of or withinop some processc)

All Disjoint Classes back to ToC

independent continuantc, characteristicc, generically dependent continuantc

All Disjoint Classes back to ToC

spatial regionc, sitec, continuant fiat boundaryc

All Disjoint Classes back to ToC

temporal regionc, spatiotemporal regionc, processc, process boundaryc

All Disjoint Classes back to ToC

opportunistic infectious dispositionc, primary infectious dispositionc, zoonotic dispositionc, reverse zoonotic dispositionc, communicabilityc

All Disjoint Classes back to ToC

infectious agent transmissibilityc, infectivityc, virulencec, susceptibilityc, infectious disease incidencec, infection incidencec, infectious disease incidence proportionc, infection incidence proportionc, infectious disease incidence ratec, infection incidence ratec, infectious disease prevalencec, infection prevalencec, infectious disease lifetime prevalencec, infectious agent seroprevalencec, infectious disease mortality ratec, infectious disease endemicityc, infectious disease sporadicityc

SWRL rules

Rule #1back to ToC

has componentop(?w,?p) , processc(?w) , processc(?p) -> has component processop(?w,?p)

Rule #2back to ToC

dispositionc(?d) , bearer ofop(?e,?d) -> has dispositionop(?e,?d)

Rule #3back to ToC

qualityc(?d) , bearer ofop(?e,?d) -> has qualityop(?e,?d)

Rule #4back to ToC

rolec(?d) , bearer ofop(?e,?d) -> has roleop(?e,?d)

Rule #5back to ToC

functionc(?d) , bearer ofop(?e,?d) -> has functionop(?e,?d)

Rule #6back to ToC

enablesop(?z,?y) , directly regulatesop(?x,?y) , gene product or complex activityc(?x) , gene product or complex activityc(?y) -> has inputop(?x,?z)

Rule #7back to ToC

gene product or complex activityc(?y) , enablesop(?x,?y) , has partop(?y,?z) -> enablesop(?x,?z)

Rule #8back to ToC

biological processc(?z) , part ofop(?y,?z) , enablesop(?x,?y) -> involved inop(?x,?z)

Rule #9back to ToC

directly regulatesop(?a1,?a2) , kinase activityc(?a1) , enabled byop(?a1,?g1) , enabled byop(?a2,?g2) -> phosphorylatesop(?g1,?g2)

Rule #10back to ToC

input ofop(?B,?C) , enabled byop(?A,?B) , has regulatory component activityop(?D,?C) -> directly regulatesop(?A,?D)

Rule #11back to ToC

input ofop(?B,?C) , enabled byop(?A,?B) , has negative regulatory component activityop(?D,?C) -> directly negatively regulatesop(?A,?D)

Rule #12back to ToC

input ofop(?B,?C) , enabled byop(?A,?B) , has positive regulatory component activityop(?D,?C) -> directly positively regulatesop(?A,?D)

Rule #13back to ToC

has inputop(?eff,?in) , has effector activityop(?mf,?eff) -> has inputop(?mf,?in)

Rule #14back to ToC

has inputop(?mf,?in) , has effector activityop(?mf,?eff) -> has inputop(?eff,?in)

Rule #15back to ToC

has effector activityop(?mf,?eff) , directly regulatesop(?mf,?mf2) -> directly regulatesop(?eff,?mf2)

Rule #16back to ToC

directly positively regulatesop(?mf,?mf2) , has effector activityop(?mf,?eff) -> directly positively regulatesop(?eff,?mf2)

Rule #17back to ToC

has effector activityop(?mf,?eff) , directly negatively regulatesop(?mf,?mf2) -> directly negatively regulatesop(?eff,?mf2)

Rule #18back to ToC

causally downstream ofop(?x,?y) , overlapsop(?x,?y) -> nothing(?x) , nothing(?y)

Rule #19back to ToC

causally upstream ofop(?x,?y) , overlapsop(?x,?y) -> nothing(?x) , nothing(?y)

Rule #20back to ToC

indirectly causally upstream ofop(?p,?q) , regulatesop(?p,?q) -> indirectly regulatesop(?p,?q)

Rule #21back to ToC

positively regulatesop(?y,?z) , negatively regulatesop(?x,?y) -> negatively regulatesop(?x,?z)

Rule #22back to ToC

negatively regulates characteristicop(?y,?z) , negatively regulatesop(?x,?y) -> positively regulates characteristicop(?x,?z)

Rule #23back to ToC

positively regulatesop(?x,?y) , negatively regulatesop(?y,?z) -> negatively regulatesop(?x,?z)

Rule #24back to ToC

acts upstream of or withinop(?x,?y) , causally upstream ofop(?y,?z) -> acts upstream ofop(?x,?z)

Rule #25back to ToC

causally upstream ofop(?q,?u) , causally upstream ofop(?p,?q) -> indirectly causally upstream ofop(?p,?u)

Namespace Declarations back to ToC

default namespace
http://purl.obolibrary.org/obo/apollo_sv.owl#
10-1186
https://doi.org/10.1186/
2024-12-24
http://purl.obolibrary.org/obo/apollo_sv/releases/2024-12-24/
225
https://github.com/jhpoelen/eol-globi-data/issues/225#
ace_lexicon
http://attempto.ifi.uzh.ch/ace_lexicon#
apollo-sv-owl
http://purl.obolibrary.org/obo/apollo_sv/dev/apollo_sv.owl#
apollo_sv
http://purl.obolibrary.org/obo/apollo_sv.owl/
axiom
http://purl.obolibrary.org/obo/bfo/axiom/
core
http://purl.obolibrary.org/obo/uberon/core#
dc
http://purl.org/dc/elements/1.1/
doap
http://usefulinc.com/ns/doap#
docs
http://purl.obolibrary.org/obo/ro/docs/
doid
http://purl.obolibrary.org/obo/doid#
efo
http://www.ebi.ac.uk/efo/
fbcv
http://purl.org/obo/owl/FBcv#
foaf
http://xmlns.com/foaf/0.1/
geo-owl
http://purl.obolibrary.org/obo/geo.owl/
go
http://purl.obolibrary.org/obo/go#
index-php
http://wiki.geneontology.org/index.php/
information-artifact-ontology
https://github.com/information-artifact-ontology/
issues
https://github.com/ontodev/robot/issues/
ncbitaxon
http://purl.obolibrary.org/obo/ncbitaxon#
obo
http://purl.obolibrary.org/obo/
obo-rel
http://purl.org/obo/owl/OBO_REL#
obo-syntax-html
http://owlcollab.github.io/oboformat/doc/obo-syntax.html#
oboInOwl
http://www.geneontology.org/formats/oboInOwl#
orcid-org
http://orcid.org/
owl
http://www.w3.org/2002/07/owl#
page
http://www.geneontology.org/page/
papers
http://www.referent-tracking.com/_RTU/papers/
pato
http://purl.obolibrary.org/obo/pato#
protege
http://protege.stanford.edu/plugins/owl/protege#
pubmed
http://www.ncbi.nlm.nih.gov/pubmed/
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
ro-owl
http://www.obofoundry.org/ro/ro.owl#
robot-obolibrary-org
http://robot.obolibrary.org/
s9uug5qmaws
https://groups.google.com/d/msg/bfo-owl-devel/s9Uug5QmAws/
skos
http://www.w3.org/2004/02/skos/core#
subsets
http://purl.obolibrary.org/obo/ro/subsets#
swrl
http://www.w3.org/2003/11/swrl#
swrla
http://swrl.stanford.edu/ontologies/3.3/swrla.owl#
swrlb
http://www.w3.org/2003/11/swrlb#
terms
http://purl.org/dc/terms/
uo
http://purl.obolibrary.org/obo/uo#
wiki
http://ontologydesignpatterns.org/wiki/
wiki-geneontology-org
https://wiki.geneontology.org/
www
http://www.referent-tracking.com/
xsd
http://www.w3.org/2001/XMLSchema#

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni .