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Cell Ontology

Metadata

URI
http://purl.obolibrary.org/obo/cl/cl-base.owl
Contributor(s)
Alexander Diehl
Ceri van Slyke
Chris Mungall
David Osumi-Sutherland
Jim Balhoff
Melissa Haendel
Nicole Vasilevsky
Terry Meehan
Yvonne Bradford
Version Information
2021-06-29
Version URI
http://purl.obolibrary.org/obo/cl/releases/2021-06-29/cl-base.owl
License
http://creativecommons.org/licenses/by/4.0/
Ontology RDF
RDF (turtle)

Description

See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, addiehl@buffalo.edu, University at Buffalo.

Table of Contents

  1. Classes
  2. Object Properties
  3. Annotation Properties
  4. Namespaces
  5. Legend

Overview

Pictures say 1,000 words
Figure 1: Ontology overview

Classes ↑

CHEBI_25179c # Classes

URI http://purl.obolibrary.org/obo/CHEBI_25179

cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000000
Description

The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one).
Restrictions obo:RO_0002160op some obo:NCBITaxon_131567c
Sub-classes obo:CL_0001061c
obo:CL_0001034c
obo:CL_0000003c

primary cultured cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000001
Description

Covers cells actively being cultured or stored in a quiescent state for future use.
Super-classes obo:CL_0000010c

obsolete immortal cell line cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000002
Description

Obsoleted in July 2013 and replaced by the CLO 'immortal cell line cell' class, as a result of CLO-OBI-CL alignment efforts.

Covers cells actively being cultured or stored in a quiescent state for future use.

native cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000003
Description

To accommodate unicellular organisms better, 'cell in vivo' has been re-labeled 'native cell' to better represent its intended meaning - that is, that it is a cell in the context of a multicellular organism or in a natural environment. 'Native' is intended to contrast with 'in vitro', which refers to cells or other biological entities that have been intentionally placed in a controlled, non-natural setting for the purpose of study or manipulation. (MAH 1.12.12).
Super-classes obo:CL_0000000c
Sub-classes obo:CL_0010017c
obo:CL_0000055c
obo:CL_0000212c
obo:CL_0000891c
obo:CL_0000422c
obo:CL_0000039c
obo:CL_0007023c
obo:CL_0011115c
obo:CL_0000293c
obo:CL_0000412c
obo:CL_0000415c
obo:CL_0000628c
obo:CL_0000183c
obo:CL_0000215c
obo:CL_0000630c
obo:CL_0000197c
obo:CL_0000520c
obo:CL_0000663c
obo:CL_0000325c
obo:CL_0000445c
obo:CL_0000333c
obo:CL_0000725c
obo:CL_0000627c
obo:CL_0007001c
obo:CL_0002371c
obo:CL_0009010c
obo:CL_0000211c
obo:CL_0000473c
obo:CL_0007005c

obsolete cell by organismc # Classes

URI http://purl.obolibrary.org/obo/CL_0000004
Description

This term was made obsolete because there is no difference in meaning between it and 'cell', as any cell can be classified by its species. If you have used this term in annotation, please replace it with cell (CL:0000000), native cell (CL:0000003), or cell in vitro (CL:0001034) as appropriate.

fibroblast neural crest derivedc # Classes

URI http://purl.obolibrary.org/obo/CL_0000005
Super-classes obo:CL_0000057c
Restrictions obo:RO_0002202op some obo:CL_0000008c

neuronal receptor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000006
Super-classes obo:CL_0000197c
Sub-classes obo:CL_0000376c
obo:CL_0000210c
obo:CL_1000082c
obo:CL_0000204c
obo:CL_0000198c

early embryonic cell (metazoa)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000007
Super-classes obo:CL_0002321c
Sub-classes obo:CL_0000360c
obo:CL_0000361c
obo:CL_0000365c
obo:CL_0007020c
obo:CL_0000353c

migratory cranial neural crest cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000008
Super-classes obo:CL_0000333c

obsolete fusiform initialc # Classes

URI http://purl.obolibrary.org/obo/CL_0000009
Description

replaced_by: PO:0000079

cultured cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000010
Description

Note that this class was re-labeled to 'cultured cell' instead of 'cell line cell', as it intent was clarified to cover any cultured cells of multicellular and unicellular organisms. This includes cells actively being cultured, or cells that have been cultured but are stored in a quiescent state for future use. In having been cultured, cells must establish homeostasis and often replicate in a foreign environment. Accomodation of this stress initiates a selection of cells fit for such challenges, wherein necessary adaptive biochemical and.or genetic changes can occur. These changes can set them apart from the in vivo cells from which they derive, and such changes will typically accumulate and change over increasing time in culture.
Super-classes obo:CL_0000578c
Sub-classes obo:CL_0000001c

migratory trunk neural crest cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000011
Super-classes obo:CL_0000333c

obsolete cell by classc # Classes

URI http://purl.obolibrary.org/obo/CL_0000012
Description

This term was made obsolete because there is no difference in meaning between it and 'cell', as any cell can be classified. If you have used this term in annotation, please replace it with cell (CL:0000000), native cell (CL:0000003), or cell in vitro (CL:0001034) as appropriate.

obsolete dentine secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000013

germ line stem cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000014
Super-classes obo:CL_0000034c
obo:CL_0000039c
Sub-classes obo:CL_0000085c
obo:CL_0000022c
obo:CL_0000086c
obo:CL_0000016c

male germ cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000015
Super-classes obo:CL_0000586c
Sub-classes obo:CL_0000018c
obo:CL_0000017c
obo:CL_0000016c
obo:CL_0000408c

male germ line stem cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000016
Super-classes obo:CL_0000015c
obo:CL_0000014c
Sub-classes obo:CL_0000087c
obo:CL_0000089c

spermatocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000017
Super-classes obo:CL_0000015c
Restrictions obo:RO_0002202op some obo:CL_0000020c
Sub-classes obo:CL_0000657c
obo:CL_0000656c

spermatidc # Classes

URI http://purl.obolibrary.org/obo/CL_0000018
Super-classes obo:CL_0000015c
Restrictions obo:RO_0002202op some obo:CL_0000657c

spermc # Classes

URI http://purl.obolibrary.org/obo/CL_0000019
Super-classes obo:CL_0000408c
Restrictions obo:RO_0002202op some obo:CL_0000018c
Sub-classes obo:CL_0011013c
obo:CL_0002290c
obo:CL_0002291c
obo:CL_0011014c

spermatogoniumc # Classes

URI http://purl.obolibrary.org/obo/CL_0000020

female germ cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000021
Super-classes obo:CL_0000586c
Sub-classes obo:CL_0000022c
obo:CL_0000675c
obo:CL_0000024c
obo:CL_0002090c
obo:CL_0000023c

female germ line stem cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000022
Super-classes obo:CL_0000021c
obo:CL_0000014c
Sub-classes obo:CL_0000090c
obo:CL_0000088c

oocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000023
Super-classes obo:CL_0000021c
Restrictions obo:RO_0000056op some obo:GO_0007143c
obo:RO_0002160op some obo:NCBITaxon_33208c
Sub-classes obo:CL_0000655c
obo:CL_0000654c

oogonial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000024
Super-classes obo:CL_0000021c
Restrictions obo:RO_0002202op some obo:CL_0000670c

egg cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000025
Super-classes obo:CL_0000675c
Restrictions obo:RO_0002202op some obo:CL_0000023c
obo:RO_0000056op some obo:GO_0007143c

invertebrate nurse cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000026
Super-classes obo:CL_0000039c
obo:CL_0000412c
Restrictions obo:RO_0002202op some obo:CL_0000722c

smooth muscle cell neural crest derivedc # Classes

URI http://purl.obolibrary.org/obo/CL_0000027
Super-classes obo:CL_0000192c
Restrictions obo:RO_0002202op some obo:CL_0000008c

CNS neuron (sensu Nematoda and Protostomia)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000028
Super-classes obo:CL_0000540c
Restrictions obo:RO_0002202op some obo:CL_0000338c
obo:BFO_0000050op some obo:UBERON_0001017c
Sub-classes obo:CL_0000673c

neuron neural crest derivedc # Classes

URI http://purl.obolibrary.org/obo/CL_0000029
Super-classes obo:CL_0000540c
Restrictions obo:RO_0002202op some obo:CL_0002676c

glioblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000030
Super-classes obo:CL_0000055c
Restrictions obo:RO_0002202op some obo:CL_0000133c
Sub-classes obo:CL_0000340c
obo:CL_0000339c
obo:CL_0002375c

neuroblast (sensu Vertebrata)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000031
Super-classes obo:CL_0000055c
Restrictions obo:RO_0002160op some obo:NCBITaxon_7742c
Sub-classes obo:CL_0002676c
obo:CL_0002362c

neuroplacodal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000032
Super-classes obo:CL_0002321c
Restrictions obo:RO_0002202op some obo:CL_0000114c

apocrine cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000033
Super-classes obo:CL_0000151c

stem cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000034
Restrictions obo:RO_0002215op some obo:GO_0030154c
Sub-classes obo:CL_0002322c
obo:CL_1001566c
obo:CL_0000723c
obo:CL_0002287c
obo:CL_0000014c

single fate stem cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000035
Super-classes obo:CL_0000723c
Sub-classes obo:CL_0000036c
obo:CL_0002249c
obo:CL_0000356c

epithelial fate stem cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000036
Super-classes obo:CL_0000035c
Sub-classes obo:CL_0000357c
obo:CL_0002640c
obo:CL_0000419c
obo:CL_0000646c
obo:CL_0000441c

hematopoietic stem cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000037
Description

Markers differ between species, and two sets of markers have been described for mice. HSCs are reportedly CD34-positive, CD45-positive, CD48-negative, CD150-positive, CD133-positive, and CD244-negative.
Super-classes obo:CL_0008001c
obo:CL_0000988c
Restrictions obo:RO_0002202op some obo:CL_0000566c
Sub-classes obo:CL_0002246c
obo:CL_0001024c
obo:CL_0002352c
obo:CL_0001008c

erythroid progenitor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000038
Super-classes obo:CL_0000764c
obo:CL_0000839c
Restrictions obo:RO_0002202op some obo:CL_0000050c
Sub-classes obo:CL_0001066c

germ line cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000039
Description

Originally this term had some plant germ line cell children.
Super-classes obo:CL_0000003c
Restrictions obo:RO_0002215op some obo:GO_0022414c
Sub-classes obo:CL_0000586c
obo:CL_0000026c
obo:CL_0000014c
obo:CL_0000670c

monoblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000040
Description

Morphology: mononuclear cell, diameter 12-20 _M, non-granular, N/C ratio 3/1 - 4/1; markers: CD11b (shared with many other myeloid cells); location: Adult: bone marrow; fetal: liver, Yolk Sac; role or process: hematopoiesis, monocyte development; lineage: hematopoietic, myeloid.
Super-classes obo:CL_0002194c
Restrictions obo:RO_0002202op some obo:CL_0002009c

mature eosinophilc # Classes

URI http://purl.obolibrary.org/obo/CL_0000041
Description

Eosinophils are CD125-positive (IL-5R), GM-CSFR-positive, IL-3R-positive, VLA4-positive. They can also express MHC Class I & II, CD4, CD9, CD11a, CD11b, CD11c, CD13, CD15, CD16, CD17, CD18, CD24, CD25,CD28, CD29, CD32, CD33, CD35, CD37, CD39, CD43, CD44, CD45, CD45RB, CD45RO, CD46, CD47, CD48, CD49d, CD49f, CD50, CD52, CD53, CD54, CD55, CD58, CD59, CD62L, CD63, CD65, CD66, CD69, CD71, CD76, CD80, CD81, CD82, CD86, CD87, CD88, CD89, CD92, CD95, CD97, CD98, CD99, CD100, CD101, CD116, CD117, CD119, CD120, CD123, CD124, CD125, CD131, CD137, CD139, CD148, CD149, CD151, CD153, CD156, CD162, CD161, CD162, CD165, CD174, CD182, CD183, CD191, CD192, CD193, CD196, CD213, IL9R, ad integrin, beta-7 integrin, FceRI, IL13Ra1, TGFbR, PAFR, LTB4R, C3aR, CystLT1R, CystLT2R, fMLPR, CRTH2 (PGD2 receptor), histamine 4R, IDO, KYN, PAR-2, Siglec-8, Siglec-10, LIR1, LIR2, LIR3, LIR7, TLR7, TLR8, and VLA-4. Eosinophils can also secrete CXCL1, eotaxin-1, GM-CSF, IL-2, IL-3, IL-4, IL-5, IL-6, IL-8, IL-10, IL-12, IL-13, IL-16, IL-18, IFN-gamma, LTC4, MIP-1alpha, NGF, PAF, RANTES, substance P, TGF-alpha, TGF-beta, TNF-alpha, and VIP.
Super-classes obo:CL_0000771c
Restrictions obo:RO_0002202op some obo:CL_0000774c

neutrophilic myeloblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000042
Description

These cells are CD11b-negative, CD15-negative, CD16-negative, CD35-negative, CD49d-positive, CD68-positive, lactotransferrin-negative, and fMLP receptor-negative. They are found in the Band 3 fraction.
Super-classes obo:CL_0000835c
Restrictions obo:RO_0002202op some obo:CL_0000834c

mature basophilc # Classes

URI http://purl.obolibrary.org/obo/CL_0000043
Description

Mature basophils are also capable of producing IL-3, IL-5, IL-6, IL-8, IL-13, IL-25, CCL22, tslp, vegf, and LTC4.
Super-classes obo:CL_0000767c
obo:CL_0002274c
Restrictions obo:RO_0002202op some obo:CL_0000770c

obsolete thymus processed stem cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000045
Description

Consider using term 'pro-T cell ; CL:0000827' or the term 'thymocyte ; CL:0000893' or one of its children instead.

obsolete bursa processed stem cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000046
Description

Consider using term 'pro-B cell ; CL:0000826' or the term 'immature B cell ; CL:0000816 or one of its children instead.

neuronal stem cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000047
Super-classes obo:CL_0000048c
Restrictions obo:RO_0002202op some obo:CL_0000133c
Sub-classes obo:CL_0000338c
obo:CL_0000468c

multi fate stem cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000048
Sub-classes obo:CL_0002339c
obo:CL_0000354c
obo:CL_0005026c
obo:CL_0002250c
obo:CL_0005020c
obo:CL_0002451c
obo:CL_0002672c
obo:CL_0002183c
obo:CL_0000355c
obo:CL_0002337c
obo:CL_0002664c
obo:CL_0002351c
obo:CL_0011012c
obo:CL_0000134c
obo:CL_0000047c
obo:CL_0002195c
obo:CL_0002285c

common myeloid progenitorc # Classes

URI http://purl.obolibrary.org/obo/CL_0000049
Description

This cell type is intended to be compatible with any vertebrate common myeloid progenitor. For mammalian CMP known to be CD34-positive, please use the term 'common myeloid progenitor, CD34-positive' (CL_0001059).
Super-classes obo:CL_0002032c
Sub-classes obo:CL_0001059c

megakaryocyte-erythroid progenitor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000050
Description

MEPs are reportedly CD19-negative, CD34-negative, CD45RA-negative, CD110-positive, CD117-positive, and SCA1-negative and reportedly express the transcription factors GATA-1 and NF-E2.
Super-classes obo:CL_0002032c
Restrictions obo:RO_0002202op some obo:CL_0000049c
Sub-classes obo:CL_0002006c
obo:CL_0002005c

common lymphoid progenitorc # Classes

URI http://purl.obolibrary.org/obo/CL_0000051
Description

CLP are CD7-positive, CD10-positive, CD19-negative, CD34-positive, CD45RA-positive, CD79a-negative, CD127-positive, AA4.1-positive, RAG-negative, Sca-1-low, sIgM-negative, sIgD-negative, TdT-negative, Vpre-B-negative, and pre-BCR-negative. Expression of transcription factors include E2A-positive, EBF-positive, Ikaros-negative, PU.1-negative, and Pax5-negative.
Super-classes obo:CL_0002032c
Sub-classes obo:CL_0001025c
obo:CL_0001027c
obo:CL_0001021c
obo:CL_0001028c

totipotent stem cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000052
Super-classes obo:CL_0000723c
Sub-classes obo:CL_0000352c

bone matrix secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000054
Super-classes obo:CL_0000151c

non-terminally differentiated cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000055
Description

define using PATO mulit-potent or oligopotent?
Super-classes obo:CL_0000003c
Restrictions obo:RO_0002215op some obo:GO_0030154c
Sub-classes obo:CL_0000680c
obo:CL_0005001c
obo:CL_0000060c
obo:CL_0007009c
obo:CL_0000541c
obo:CL_0000031c
obo:CL_0005005c
obo:CL_0005003c
obo:CL_0007003c
obo:CL_0007002c
obo:CL_0000464c
obo:CL_0000062c
obo:CL_0005004c
obo:CL_0000030c
obo:CL_0007000c
obo:CL_0007010c
obo:CL_0005002c
obo:CL_0000058c
obo:CL_0011020c

myoblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000056
Super-classes obo:CL_0000680c
Sub-classes obo:CL_0000621c
obo:CL_0000515c
obo:CL_0008006c
obo:CL_0008018c
obo:CL_0000514c
obo:CL_0000513c

fibroblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000057
Description

These cells may be vimentin-positive, fibronectin-positive, fsp1-positive, MMP-1-positive, collagen I-positive, collagen III-positive, and alpha-SMA-negative.
Super-classes obo:CL_0002320c
Restrictions obo:RO_0002202op some obo:CL_0000134c
Sub-classes obo:CL_0002556c
obo:CL_0002241c
obo:CL_0002552c
obo:CL_1000301c
obo:CL_1000306c
obo:CL_4023054c
obo:CL_0002550c
obo:CL_4006000c
obo:CL_0002334c
obo:CL_0002240c
obo:CL_0000432c
obo:CL_0002620c
obo:CL_0002558c
obo:CL_1000305c
obo:CL_0000632c
obo:CL_0002549c
obo:CL_1000692c
obo:CL_0011022c
obo:CL_0002557c
obo:CL_0002548c
obo:CL_0002410c
obo:CL_0002555c
obo:CL_0011027c
obo:CL_0000005c
obo:CL_1000299c
obo:CL_0000688c
obo:CL_1000300c
obo:CL_1000304c
obo:CL_4006001c
obo:CL_0002554c
obo:CL_1000303c
obo:CL_0002363c
obo:CL_0002553c
obo:CL_1000307c

chondroblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000058
Super-classes obo:CL_0002320c
obo:CL_0000055c
Restrictions obo:RO_0003000op some obo:UBERON_0002418c
obo:RO_0002202op some obo:CL_0007009c

ameloblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000059
Description

non-encoded relationship from VSAO produces VSAO:0000066
Super-classes obo:CL_0000151c
obo:CL_0000146c
Restrictions obo:RO_0003000op some obo:UBERON_0001752c
obo:BFO_0000050op some obo:UBERON_0005176c
obo:RO_0002220op some obo:UBERON_0001763c
obo:RO_0002215op some obo:GO_0097186c
obo:RO_0002202op some obo:CL_0007000c

odontoblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000060
Description

legacy def: One of the cells forming the outer surface of dental pulp that produces tooth dentin.
Super-classes obo:CL_0000055c
obo:CL_0002159c
Restrictions obo:RO_0003000op some obo:UBERON_0001751c
obo:RO_0002202op some obo:CL_0007003c
obo:BFO_0000050op some obo:UBERON_0005176c
Sub-classes obo:CL_0007013c
obo:CL_0007012c

cementoblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000061
Description

Legacy def: A cell of ectomesenchymal origin that aids in the formation the cementum layer on the roots of teeth.
Super-classes obo:CL_0000062c
obo:CL_0000151c
Restrictions obo:RO_0003000op some obo:UBERON_0001753c
obo:BFO_0000050op some obo:UBERON_0005176c
obo:RO_0002202op some obo:CL_0007002c

osteoblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000062
Description

non-encoded relationships from VSAO - capable_of_producing VSAO:0000020
Super-classes obo:CL_0002320c
obo:CL_0000055c
Restrictions obo:RO_0002202op some obo:CL_0007010c
obo:RO_0003000op some obo:UBERON_0008883c
Sub-classes obo:CL_0000061c
obo:CL_0001040c
obo:CL_0001039c

obsolete cell by histologyc # Classes

URI http://purl.obolibrary.org/obo/CL_0000063
Description

This term was made obsolete because there is no difference in meaning between it and 'cell', as any cell can be classified by its microscopic appearance. If you have used this term in annotation, please replace it with cell (CL:0000000), native cell (CL:0000003), or cell in vitro (CL:0001034) as appropriate.

ciliated cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000064

ependymal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000065
Super-classes obo:CL_0000710c
Restrictions obo:BFO_0000051op some obo:GO_0005929c

epithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000066
Super-classes obo:CL_0000548c
Sub-classes obo:CL_0000075c
obo:CL_0002586c
obo:CL_0000150c
obo:CL_0000098c
obo:CL_0000076c
obo:CL_1000452c
obo:CL_0000682c
obo:CL_0000658c
obo:CL_1000432c
obo:CL_0002621c
obo:CL_1001573c
obo:CL_0002560c
obo:CL_1000450c
obo:CL_1000441c
obo:CL_0002222c
obo:CL_0000322c
obo:CL_1000449c
obo:CL_0000068c
obo:CL_0000083c
obo:CL_0002634c
obo:CL_1000433c
obo:CL_0002536c
obo:CL_1000405c
obo:CL_0005013c
obo:CL_0000244c
obo:CL_1000415c
obo:CL_0000073c
obo:CL_0000079c
obo:CL_0000500c
obo:CL_0002076c
obo:CL_0005012c
obo:CL_1000436c
obo:CL_1000448c
obo:CL_0005006c
obo:CL_0000730c
obo:CL_1000434c
obo:CL_0002565c
obo:CL_0000846c
obo:CL_0000182c
obo:CL_0010015c
obo:CL_0000418c
obo:CL_1000296c
obo:CL_0000666c
obo:CL_0000477c
obo:CL_0000420c
obo:CL_0002561c
obo:CL_0002535c

ciliated epithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000067

duct epithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000068
Super-classes obo:CL_0000066c
obo:CL_0002371c
Sub-classes obo:CL_0000072c
obo:CL_0000069c

branched duct epithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000069
Super-classes obo:CL_0000068c
Sub-classes obo:CL_1000322c
obo:CL_1000488c
obo:CL_0002079c
obo:CL_0002326c
obo:CL_0000377c

obsolete epithelial cell of glandc # Classes

URI http://purl.obolibrary.org/obo/CL_0000070

blood vessel endothelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000071
Super-classes obo:CL_0002139c
obo:CL_0000076c
obo:CL_0002371c
Restrictions obo:RO_0002202op some obo:CL_0002546c
Sub-classes obo:CL_0002543c
obo:CL_1001216c
obo:CL_1000413c
obo:CL_1001099c
obo:CL_1000892c
obo:CL_1001096c
obo:CL_0002585c
obo:CL_1001223c
obo:CL_0002671c
obo:CL_1001220c
obo:CL_0000704c
obo:CL_1000412c
obo:CL_0002144c
obo:CL_1001213c

non-branched duct epithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000072
Super-classes obo:CL_0000068c
Restrictions obo:RO_0002202op some obo:CL_0000222c
Sub-classes obo:CL_1000437c
obo:CL_1000435c
obo:CL_0002232c
obo:CL_1000454c

barrier epithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000073
Super-classes obo:CL_0002371c
obo:CL_0000066c

obsolete epithem cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000074
Description

replaced_by: PO:0000066

columnar/cuboidal epithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000075
Super-classes obo:CL_0000066c
obo:CL_0002371c
Sub-classes obo:CL_0000686c
obo:CL_0000185c
obo:CL_0005010c
obo:CL_0000239c
obo:CL_0002224c
obo:CL_0000146c
obo:CL_0000710c
obo:CL_0002652c
obo:CL_0005009c
obo:CL_0000618c
obo:CL_0000674c

squamous epithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000076
Super-classes obo:CL_0000066c
Sub-classes obo:CL_0002653c
obo:CL_0000575c
obo:CL_0000077c
obo:CL_0000240c
obo:CL_0002244c
obo:CL_0000078c
obo:CL_0000071c
obo:CL_0000411c
obo:CL_0000132c

mesothelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000077
Super-classes obo:CL_0000076c
obo:CL_0000213c
Restrictions obo:RO_0002202op some obo:CL_0000222c
Sub-classes obo:CL_1000490c
obo:CL_0011019c
obo:CL_1000492c
obo:CL_1000298c
obo:CL_4023054c
obo:CL_1000444c
obo:CL_1000457c
obo:CL_0002625c
obo:CL_0000684c
obo:CL_1000456c
obo:CL_1000491c

peridermal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000078
Super-classes obo:CL_0000076c
obo:CL_0002371c

stratified epithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000079
Super-classes obo:CL_0002371c
obo:CL_0000066c
Restrictions obo:RO_0002202op some obo:CL_0000357c
Sub-classes obo:CL_0000240c
obo:CL_0000241c

circulating cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000080
Sub-classes obo:CL_0000421c

blood cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000081
Super-classes obo:CL_0000988c
Sub-classes obo:CL_0000390c
obo:CL_0002318c

epithelial cell of lungc # Classes

URI http://purl.obolibrary.org/obo/CL_0000082
Restrictions obo:BFO_0000050op some obo:UBERON_0000115c
Sub-classes obo:CL_0017000c
obo:CL_0002206c

epithelial cell of pancreasc # Classes

URI http://purl.obolibrary.org/obo/CL_0000083
Super-classes obo:CL_0000066c
obo:CL_0002371c
Restrictions obo:RO_0002202op some obo:CL_0000223c
Sub-classes obo:CL_0002079c
obo:CL_0002080c
obo:CL_0002064c

T cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000084
Super-classes obo:CL_0000542c
Restrictions obo:RO_0002202op some obo:CL_0000827c
Sub-classes obo:CL_0000789c
obo:CL_0000798c
obo:CL_0002420c
obo:CL_0002419c

germ line stem cell (sensu Vertebrata)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000085
Super-classes obo:CL_0000014c
Restrictions obo:RO_0002160op some obo:NCBITaxon_7742c
Sub-classes obo:CL_0000090c
obo:CL_0000089c

germ line stem cell (sensu Nematoda and Protostomia)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000086
Super-classes obo:CL_0000014c
Restrictions obo:RO_0002162op only ()
Sub-classes obo:CL_0000088c
obo:CL_0000087c

male germ line stem cell (sensu Nematoda and Protostomia)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000087
Super-classes obo:CL_0000016c
obo:CL_0000086c

female germ line stem cell (sensu Nematoda and Protostomia)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000088
Super-classes obo:CL_0000086c
obo:CL_0000022c

male germ line stem cell (sensu Vertebrata)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000089
Super-classes obo:CL_0000016c
obo:CL_0000085c

female germ line stem cell (sensu Vertebrata)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000090
Super-classes obo:CL_0000085c
obo:CL_0000022c

Kupffer cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000091
Description

Markers: Mouse: F4/80+, CD11b-low, CD68+, sialoadhesin+, CD163/SRCR+; role or process: immune, antigen-presentation, clearance of senescent erythrocytes, iron metabolism. Kupffer cells are also reportedly C3aR-positive, CD14-low, CD54-positive, CD88-positive, and CD284-positive. They are also capable of producing IL-1, IL-6, TNF-alpha, nitric oxide, PGD2, PGE2, PGF2alpha, and TXA2.
Super-classes obo:CL_0000864c

osteoclastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000092
Description

Morphology: Highly vesicular; markers: Surface: RANK, cFMS (MCSF receptor); Secreted: cathepsin K and TRAP (tartate resistant acid phosphatase); transcription factors: PU.1, cFOS, MITF, NFkB (p52); role or process: tissue remodelling: bone resorption; lineage: hematopoietic, myeloid.
Super-classes obo:CL_0001035c
obo:CL_0000766c
Restrictions obo:RO_0002202op some obo:CL_0000576c
Sub-classes obo:CL_0000779c
obo:CL_0000778c
obo:CL_0000588c

obsolete osteochondroclastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000093
Description

Consider using 'osteoclast ; CL:0000092' instead.

granulocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000094
Super-classes obo:CL_0000766c
Sub-classes obo:CL_0000771c
obo:CL_0000767c
obo:CL_0000775c

neuron associated cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000095
Super-classes obo:CL_0002319c
Restrictions obo:RO_0002202op some obo:CL_0000133c
Sub-classes obo:CL_0000130c
obo:CL_0000123c
obo:CL_0000125c

mature neutrophilc # Classes

URI http://purl.obolibrary.org/obo/CL_0000096
Description

Neutrophils are also capable of secreting GRO-alpha, IL-1beta, IL-1ra, IL-3, IL-12, IP-10, MIG, MIP-1alpha, MIP-1beta, TGF-beta, TNF-alpha, VEGF, and anti-microbial peptides. They can positively influence the chemotaxis of basophils, T-cells, monocytes, macrophages, dendritic cells, and other neutrophils. Neutrophils are also CD35-positive, CD64-positive, CD89-positive, CD184-positive, and fMLP receptor-positive Ly-6G-positive (mouse), TLR2-low, TLR4-low, and lineage-negative (CD2, CD3, CD5, CD9, CD19, CD36, CD49d, CD56, CD61, CD235a (glycophorin-A)).
Super-classes obo:CL_0000775c
Sub-classes obo:CL_0000560c
obo:CL_0011114c

mast cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000097
Description

Mast cells are generally integrin beta-7-negative and positive for TLR2, TLR3, TLR4, TLR5, TLR7, TLR9, C3aR, C5aR, CR3, CR4, VEGF, FGF2, and renin. They can express MHC Class I and II on their surface. Activated murine mast cells (IgE+Antigen) were capable of expressing the following co-stimulatory molecules: CD95 (Fas), CD120b, CD137 (4-1BB), CD153 (CD30L), CD154 (CD40L), GITR, ICOSL, OX40L, PD-L1, and PD-L2. Note that there was some mouse strain variation. Mast cells have also been demonstrated to produce bFGF, CCL2, CCL4, CCL5, CCL11, CCL20, CXCL2, CXCL8, CXCL10, GM-CSF, IFN-gamma, IL-1, IL-2, IL-3, IL-8, IL-10, IL-11, IL-12, IL-13, IL-16, IL-25, IL-18, MIP-1, prostaglandin D2, SCF, TGF-beta, TNF-alpha, TSLP, VEGF, and XCL1. They express the transcription factors Transcription factors AP-1, GATA1, MITF, Notch2, PIAS3, PU.1, and STAT5.
Super-classes obo:CL_0000766c
obo:CL_0002274c
Restrictions obo:RO_0002202op some obo:CL_0000831c
Sub-classes obo:CL_0000484c
obo:CL_0000485c

sensory epithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000098
Description

The term "neuroepithelial cell" is used to describe both this cell type and neurecto-epithelial cell (CL:0000710).
Super-classes obo:CL_0000066c
obo:CL_0002371c
obo:CL_0000197c
Sub-classes obo:CL_0000209c
obo:CL_0002491c
obo:CL_0002167c

interneuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000099
Super-classes obo:CL_0000540c
Sub-classes obo:CL_4023028c
obo:CL_0000561c
obo:CL_4023027c
obo:CL_4023025c
obo:CL_4023071c
obo:CL_0011104c
obo:CL_4023022c
obo:CL_0000402c
obo:CL_4023030c
obo:CL_0000397c
obo:CL_0000745c
obo:CL_4023024c
obo:CL_4023007c
obo:CL_4023031c
obo:CL_0000498c
obo:CL_4023036c
obo:CL_4023034c
obo:CL_4023023c
obo:CL_4023010c
obo:CL_0000534c
obo:CL_0000246c
obo:CL_4023014c

motor neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000100
Super-classes obo:CL_0000527c
Sub-classes obo:CL_0005025c
obo:CL_0015000c
obo:CL_0008048c
obo:CL_0008039c
obo:CL_0008015c
obo:CL_0011001c
obo:CL_0000533c

sensory neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000101
Super-classes obo:CL_0000526c
Sub-classes obo:CL_0000251c
obo:CL_1001434c
obo:CL_0009000c
obo:CL_3000004c
obo:CL_1001451c

polymodal neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000102
Super-classes obo:CL_0000540c

bipolar neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000103

multipolar neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000104

pseudounipolar neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000105
Super-classes obo:CL_0000540c

unipolar neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000106
Super-classes obo:CL_0000540c

autonomic neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000107
Super-classes obo:CL_0000540c
Sub-classes obo:CL_0011103c
obo:CL_0011102c

cholinergic neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000108

adrenergic neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000109
Super-classes obo:CL_0000540c

peptidergic neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000110
Super-classes obo:CL_0000540c
Restrictions obo:RO_0002215op some obo:GO_0002790c

peripheral neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000111
Super-classes obo:CL_0000540c
Sub-classes obo:CL_3000004c

columnar neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000112
Super-classes obo:CL_0000540c

mononuclear phagocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000113
Super-classes obo:CL_0000518c

surface ectodermal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000114
Super-classes obo:CL_0000221c

endothelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000115
Description

From FMA: 9.07.2001: Endothelial cell has always been classified as a kind of epithelial cell, specifically a squamous cell but that is not true. First, endothelial cell can either be squamous or cuboidal (e.g. high-endothelial cell) and secondly, it has different embryological derivation (mesodermal) than a true epithelial cell (ectodermal and endodermal). The basis for present classification is the fact that it comprises the outermost layer or lining of anatomical structures (location-based) but a better structural basis for the differentia is the cytoskeleton of the cell. Endothelial cell has vimentin filaments while an epithelial cell has keratin filaments. [Onard].
Super-classes obo:CL_0002078c
obo:CL_0000213c
Sub-classes obo:CL_1000708c
obo:CL_0002188c
obo:CL_0002367c
obo:CL_0002139c
obo:CL_0000131c
obo:CL_0002342c
obo:CL_1000411c
obo:CL_0002350c

pioneer neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000116
Super-classes obo:CL_0000540c

CNS neuron (sensu Vertebrata)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000117
Super-classes obo:CL_0000540c
Restrictions obo:RO_0002202op some obo:CL_0000031c
obo:BFO_0000050op some obo:UBERON_0001017c
Sub-classes obo:CL_0000555c
obo:CL_0002614c
obo:CL_0002613c
obo:CL_0000121c
obo:CL_0002611c
obo:CL_0008049c
obo:CL_0000120c
obo:CL_0000740c
obo:CL_0000695c
obo:CL_0000402c
obo:CL_0002612c
obo:CL_0002609c
obo:CL_0002610c
obo:CL_0012001c
obo:CL_0002608c

basket cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000118

cerebellar Golgi cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000119
Super-classes obo:CL_0011005c
Restrictions obo:BFO_0000050op some obo:UBERON_0002129c

granule cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000120
Super-classes obo:CL_0000117c
Sub-classes obo:CL_0000626c
obo:CL_0001031c

Purkinje cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000121
Super-classes obo:CL_0000117c
obo:CL_0000527c
Restrictions obo:RO_0002100op some obo:UBERON_0002129c

stellate neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000122

neuron associated cell (sensu Vertebrata)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000123
Super-classes obo:CL_0000095c
Restrictions obo:RO_0002160op some obo:NCBITaxon_7742c
obo:RO_0002202op some obo:CL_0000333c
Sub-classes obo:CL_0000339c
obo:CL_0000242c
obo:CL_0002453c
obo:CL_0000516c

obsolete glial cell (sensu Nematoda and Protostomia)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000124
Description

This is a grouping class that is no longer needed or wanted.

glial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000125
Super-classes obo:CL_0000095c
Restrictions obo:RO_0002202op some obo:CL_0000030c
Sub-classes obo:CL_0000681c
obo:CL_0011028c
obo:CL_0000126c

macroglial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000126
Super-classes obo:CL_0000125c
Restrictions obo:RO_0002202op some obo:CL_0000339c
Sub-classes obo:CL_0000128c
obo:CL_0000127c

astrocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000127
Description

Astrocytes are reportedly CD68-negative, CD121a-positive, CD184-positive, CD192-positive, CRF-positive, EGFR-positive, GFAP-positive, GLUT1-positive, MBP-negative, and NGFR-positive.
Super-classes obo:CL_0000126c
Sub-classes obo:CL_0000636c
obo:CL_0002605c
obo:CL_0002606c
obo:CL_0002604c
obo:CL_0000644c
obo:CL_0002603c
obo:CL_0002626c
obo:CL_0002627c
obo:CL_0000645c
obo:CL_0012000c
obo:CL_0000683c

oligodendrocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000128
Description

Oligodendrocytes are reportedly MDP-positive and CD4-negative.
Super-classes obo:CL_0000126c
Restrictions obo:BFO_0000050op some obo:UBERON_0001017c
obo:RO_0002202op some obo:CL_0002453c

microglial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000129
Description

Markers: Mouse: CD11b+, F4/80+, CD68+. They represent ~12% of the cells in the CNS, but they are not uniformly distributed within the CNS. A normal adult mouse brain has approximately 3.5x10e6 microglia. Microglia are also reportedly CD3-negative, CD4-positive, CD8-negative, CD11b-positive, CD11c-high, CD14-negative, CD19-negative, CD45-low, CD56-negative, CD163-negative, CD200R-positive, CD281-positive, CD282-positive, CD283-positive, CD284-positive, CD285-positive, CD286-positive, CD287-positive, CD288-positive, CD289-positive, Gr1-negative, nestin-positive, and PU.1-positive.
Super-classes obo:CL_0000878c
Restrictions obo:RO_0002202op some obo:CL_0002453c
Sub-classes obo:CL_0002629c
obo:CL_0002628c

neuron associated cell (sensu Nematoda and Protostomia)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000130
Super-classes obo:CL_0000095c
Restrictions obo:RO_0002162op only ()
Sub-classes obo:CL_0000340c
obo:CL_0000143c

gut endothelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000131
Super-classes obo:CL_0000115c
Restrictions obo:RO_0002202op some obo:CL_0000223c

corneal endothelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000132
Super-classes obo:CL_0002371c
obo:CL_0000710c
obo:CL_0000076c
Restrictions obo:RO_0002202op some obo:CL_0000008c

neurectodermal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000133
Super-classes obo:CL_0000221c
Sub-classes obo:CL_0000854c

mesenchymal stem cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000134
Description

Many but not all mesenchymal cells derive from the mesoderm. MSCs are reportedly CD3-negative, CD4-negative, CD5-negative, CD8-negative, CD11a-negative, CD11b-negative, CD14-negative, CD19-negative, CD29-positive, CD31-negative, CD34-negative, CD38-negative, CD40-negative, CD44-positive, CD45-negative, CD49-positive, CD54-positive, CD66b-negative, CD79a-negative, CD80-negative, CD102-positive, CD106-positive, CD117-positive, CD121a-positive, CD121b-positive, CD123-positive, CD124-positive, CD133-negative, CD146-positive, CD166-positive, CD271-positive, B220-negative, Gr1-negative, MHCI-positive, MHCII-negative, SSEA4-negative, sca1-positive, Ter119-negative, and glycophorin A-negative. Cultured MSCs are capable of producing stem cell factor, IL7, IL8, IL11, TGF-beta, cofilin, galectin-1, laminin-receptor 1, cyclophilin A, and MMP-2.
Super-classes obo:CL_0002320c
obo:CL_0000048c
Sub-classes obo:CL_0000566c
obo:CL_0000383c
obo:CL_0000324c
obo:CL_0002639c
obo:CL_0002571c
obo:CL_0000346c
obo:CL_0005021c
obo:CL_0002572c

fibrocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000135
Description

Cultured human fibrocytes are MHCI-positive, MHCII-positive, CD1a-negative, CD3-negative, CD4-negative, CD8-negative, CD10-negative, CD11b-positive, CD13-positive, CD14-negative, CD16-negative, CD18-positive, CD19-negative, CD25-negative, CD29-positive, CD32-positive, CD33-negative, CD34-positive, CD38-negative, CD40-positive, CD44-negative, CD45RO-positive, CD49a-positive, CD49b-positive, CD49c-negative, CD49d-negative, CD49e-positive, CD49f-negative, CD56-negative, CD58-positive, CD61-positive, CD64-positive, CD70-negative, CD71-positive, CD80-positive, CD83-negative, CD86-positive, CD103-negative, CD105-positive, CD181-positive, CD182-negative, CD183-positive, CD184-positive, CD185-negative, CD186-negative, CD191-positive, CD192-negative, CD193-positive, CD194-positive, CD195-positive, CD196-negative, CD197-positive, CD199-positive, desmin-negative, F4/80-positive, Gr1-positive, LSP-1-positive, MHCI-positive, MHCII-positive, alpha-SMA-negative, TCRab-negative, TCRgd-negative, and vimentin-positive. Fibrocytes are also capable of secreting angiogenin, bFGF, CCL2, CCL3, CCL4, CCL8, CXCL1, type I collagen, type III collagen, CTGF, fibronectin, GM-CSF, IL-1a, IL-6, IL-8, IL-10, M-CSF, MMP-9, PDGF-A, TGF-alpha, TGF-beta1, TNF-alpha, and VEGF-A.
Super-classes obo:CL_0000499c
Restrictions obo:RO_0002202op some obo:CL_0000057c
Sub-classes obo:CL_0002665c
obo:CL_0000388c
obo:CL_1000693c
obo:CL_1000308c

fat cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000136
Super-classes obo:CL_0002320c
obo:CL_0000325c
Restrictions obo:RO_0002202op some obo:CL_0000134c
Sub-classes obo:CL_0001070c
obo:CL_0002616c
obo:CL_0002521c
obo:CL_1000309c
obo:CL_0002615c
obo:CL_1000311c
obo:CL_1000310c
obo:CL_0000448c
obo:CL_0002617c
obo:CL_0000449c

osteocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000137
Description

VSAO relationship simplified OBO_REL:integral_part_of VSAO:0000118
Super-classes obo:CL_0001035c
Restrictions obo:BFO_0000050op some obo:UBERON_0002481c
obo:RO_0002202op some obo:CL_0001040c
Sub-classes obo:CL_0000141c

chondrocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000138
Super-classes obo:CL_0002320c
obo:CL_0000153c
obo:CL_0000667c
Restrictions obo:RO_0001025op some obo:UBERON_0002418c
obo:RO_0002202op some obo:CL_0000058c
Sub-classes obo:CL_0000743c
obo:CL_0000742c
obo:CL_0000744c

odontocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000140
Super-classes obo:CL_0002320c
Restrictions obo:RO_0002202op some obo:CL_0000134c
obo:RO_0002202op some obo:CL_0000060c
obo:RO_0003000op some obo:UBERON_0001751c

cementocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000141
Description

CHECK: wikipedia says that cementocytes no longer produce cementum, but the phenoscape def is: Skeletogenic cell that produces cementum, is part of the odontogenic papilla, and is a transformation of a cementoblast cell (no change to existing def).
Super-classes obo:CL_0000137c
Restrictions obo:BFO_0000050op some obo:UBERON_0005176c
obo:RO_0002202op some obo:CL_0000061c

hyalocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000142
Super-classes obo:CL_0000499c

guidepost cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000143
Super-classes obo:CL_0000130c

obsolete cell by functionc # Classes

URI http://purl.obolibrary.org/obo/CL_0000144
Description

This term was made obsolete because there is no difference in meaning between it and 'cell', as any cell can be classified by its function or behavior. If you have used this term in annotation, please replace it with cell (CL:0000000), native cell (CL:0000003), or cell in vitro (CL:0001034) as appropriate.

professional antigen presenting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000145
Description

Note change of name; nearly all somatic cells can present antigens to T cells via MHC Class I complexes leading to effector responses, but professional antigen presenting cells constitutively express MHC Class II as well as costimulatory molecules, and thus can initiate immune responses via T cells.
Super-classes obo:CL_0000738c

simple columnar epithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000146
Super-classes obo:CL_0000075c
Sub-classes obo:CL_0000059c
obo:CL_0000429c
obo:CL_0000373c

pigment cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000147
Super-classes obo:CL_0000325c
Sub-classes obo:CL_0000571c
obo:CL_0000430c
obo:CL_0000341c
obo:CL_0000574c
obo:CL_0000149c
obo:CL_0000148c
obo:CL_0000747c
obo:CL_0000431c
obo:CL_0000342c

melanocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000148
Super-classes obo:CL_0002371c
obo:CL_0000147c
Sub-classes obo:CL_0002567c
obo:CL_0002484c
obo:CL_0002485c
obo:CL_1000458c
obo:CL_0002486c
obo:CL_0002482c
obo:CL_0002566c
obo:CL_0002483c
obo:CL_1000391c

visual pigment cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000149
Super-classes obo:CL_0000147c
Sub-classes obo:CL_0000343c
obo:CL_0001658c
obo:CL_0002586c

glandular epithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000150
Super-classes obo:CL_0000066c
obo:CL_0002371c
obo:CL_0000151c
Restrictions obo:BFO_0000050op some obo:UBERON_0006799c
Sub-classes obo:CL_0000318c
obo:CL_0002658c
obo:CL_0000622c
obo:CL_0000336c
obo:CL_0000510c
obo:CL_0000164c
obo:CL_0000434c
obo:CL_1000426c
obo:CL_0000637c
obo:CL_0000160c
obo:CL_0000162c
obo:CL_0002260c
obo:CL_0002257c
obo:CL_0000651c
obo:CL_0002097c
obo:CL_0002656c
obo:CL_0002657c
obo:CL_0002313c
obo:CL_0002659c

secretory cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000151
Sub-classes obo:CL_0000161c
obo:CL_0000059c
obo:CL_0000318c
obo:CL_0000054c
obo:CL_0000487c
obo:CL_0000321c
obo:CL_0000152c
obo:CL_0000157c
obo:CL_0000424c
obo:CL_0000436c
obo:CL_0000317c
obo:CL_0000447c
obo:CL_0000249c
obo:CL_0000851c
obo:CL_0000061c
obo:CL_0000314c
obo:CL_0000686c
obo:CL_0000159c
obo:CL_0000315c
obo:CL_1000155c
obo:CL_0000512c
obo:CL_0000150c
obo:CL_0000033c
obo:CL_0000457c
obo:CL_0000435c

exocrine cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000152
Super-classes obo:CL_0000151c

glycosaminoglycan secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000153
Super-classes obo:CL_0000327c
obo:CL_0000447c
Sub-classes obo:CL_0000214c
obo:CL_0000138c

protein secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000154
Sub-classes obo:CL_0000622c
obo:CL_0000470c
obo:CL_0000711c
obo:CL_0000511c
obo:CL_0000155c
obo:CL_0000323c

peptic cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000155
Super-classes obo:CL_0002178c
obo:CL_0002659c
obo:CL_0000154c

obsolete antibody secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000156
Description

Consider using 'B cell ; CL:0000236' or one of its children instead.

surfactant secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000157
Super-classes obo:CL_0000151c

club cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000158
Super-classes obo:CL_0002328c

seromucus secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000159
Super-classes obo:CL_0000151c
Sub-classes obo:CL_0000313c
obo:CL_0000319c

goblet cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000160
Super-classes obo:CL_0000150c
Restrictions obo:RO_0002215op some obo:GO_0070254c

acid secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000161
Super-classes obo:CL_0000151c
Sub-classes obo:CL_0000162c

parietal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000162
Super-classes obo:CL_0002178c
obo:CL_0000161c
obo:CL_0000150c

endocrine cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000163
Restrictions obo:BFO_0000050op some obo:UBERON_0002368c
Sub-classes obo:CL_0000164c
obo:CL_0000642c
obo:CL_0002074c
obo:CL_0000689c
obo:CL_0000165c
obo:CL_0000652c
obo:CL_0000641c
obo:CL_0008024c
obo:CL_0000452c

enteroendocrine cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000164
Super-classes obo:CL_0000163c
obo:CL_0000150c
Sub-classes obo:CL_0000696c
obo:CL_0002282c
obo:CL_0002284c
obo:CL_0002281c
obo:CL_0002502c
obo:CL_0002268c
obo:CL_0002277c
obo:CL_0000508c
obo:CL_0000169c
obo:CL_0002278c
obo:CL_0000504c
obo:CL_0002279c
obo:CL_0000577c
obo:CL_0002280c
obo:CL_0000502c

neuroendocrine cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000165
Super-classes obo:CL_0000710c
obo:CL_0000163c
obo:CL_0000393c
Sub-classes obo:CL_0002066c
obo:CL_0000699c
obo:CL_0000568c

chromaffin cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000166
Super-classes obo:CL_0000568c
Restrictions obo:RO_0002202op some obo:CL_0000333c
Sub-classes obo:CL_1000467c
obo:CL_1000427c
obo:CL_1000466c
obo:CL_1000465c
obo:CL_0000336c
obo:CL_1000425c
obo:CL_1000426c
obo:CL_0002516c
obo:CL_0000577c
obo:CL_1000424c

peptide hormone secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000167
Sub-classes obo:CL_0000481c
obo:CL_0000696c
obo:CL_0000554c
obo:CL_0000507c
obo:CL_0000480c
obo:CL_0000509c
obo:CL_0000478c
obo:CL_0002281c
obo:CL_0002268c
obo:CL_0002277c
obo:CL_0002279c
obo:CL_0002278c
obo:CL_0000483c
obo:CL_0002373c
obo:CL_0002272c
obo:CL_0002280c
obo:CL_0000505c
obo:CL_0000446c
obo:CL_0002269c
obo:CL_0000479c

insulin secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000168
Sub-classes obo:CL_0000169c

type B pancreatic cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000169
Description

Pancreatic beta cells are also reportedly CD284-positive. Upon activation, they upregulate their CD14 expression.
Super-classes obo:CL_0000164c
obo:CL_0000168c
Restrictions obo:RO_0002202op some obo:CL_0002351c

glucagon secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000170

pancreatic A cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000171
Super-classes obo:CL_0002067c
Restrictions obo:RO_0002202op some obo:CL_0002351c
obo:BFO_0000050op some obo:UBERON_0000006c
obo:RO_0002215op some obo:GO_0070091c

somatostatin secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000172

pancreatic D cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000173
Super-classes obo:CL_0000502c
Restrictions obo:RO_0002202op some obo:CL_0002351c
obo:BFO_0000050op some obo:UBERON_0000006c

steroid hormone secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000174
Sub-classes obo:CL_0002097c
obo:CL_0000501c
obo:CL_0000175c

luteal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000175
Super-classes obo:CL_0002132c
obo:CL_0000174c
Restrictions obo:BFO_0000050op some obo:UBERON_0002512c
obo:RO_0002215op some obo:GO_0042701c
Sub-classes obo:CL_0000592c
obo:CL_0000590c

ecdysteroid secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000176

testosterone secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000177
Sub-classes obo:CL_0000178c
obo:CL_0000592c

Leydig cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000178
Description

Note that the Amphibian Anatomy Ontology (AA) has a class 'leydig cells' but this is unrelated
Super-classes obo:CL_0000177c
Restrictions obo:BFO_0000050op some obo:UBERON_0005212c

progesterone secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000179
Sub-classes obo:CL_0000590c

estradiol secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000180

obsolete metabolising cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000181
Description

Removing this grouping class, because the groupings are incomplete and too hard to maintain.

hepatocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000182
Description

Hepatocytes are reportedly MHC Class I-positive and MHC Class II-positive.
Super-classes obo:CL_0002371c
obo:CL_0000066c
obo:CL_0000417c
Restrictions obo:RO_0002215op some obo:GO_0044237c
obo:RO_0002202op some obo:CL_0005026c
obo:RO_0002215op some obo:GO_0098754c
obo:BFO_0000050op some obo:UBERON_0002107c
obo:RO_0002215op some obo:GO_0006699c

contractile cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000183
Super-classes obo:CL_0000003c
Sub-classes obo:CL_0000185c
obo:CL_0000186c
obo:CL_0000187c
obo:CL_0000669c

myoepithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000185
Super-classes obo:CL_0000075c
obo:CL_0000183c
obo:CL_0000548c
Restrictions obo:RO_0002202op some obo:CL_0000222c
Sub-classes obo:CL_1000417c
obo:CL_1000470c
obo:CL_1000420c
obo:CL_1000472c
obo:CL_1000419c
obo:CL_1000418c
obo:CL_1000473c
obo:CL_1000394c
obo:CL_1000468c
obo:CL_0002481c
obo:CL_1000471c
obo:CL_0000664c
obo:CL_1000469c
obo:CL_1000416c
obo:CL_1000445c
obo:CL_0002324c

myofibroblast cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000186
Description

Myofibroblasts are alpha-SMA-positive, CD34-negative, CD45-negative. They are reportedly capable of secreting IL-1beta, IL-6, and TNF-alpha.
Super-classes obo:CL_0000183c
obo:CL_0000548c
obo:CL_0002371c
Sub-classes obo:CL_0002576c
obo:CL_1000691c

muscle cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000187
Super-classes obo:CL_0000393c
obo:CL_0000183c
obo:CL_0000548c
obo:CL_0002371c
Restrictions obo:RO_0002202op some obo:CL_0000056c
Sub-classes obo:CL_0000737c
obo:CL_0008004c
obo:CL_0008000c
obo:CL_0008007c

cell of skeletal musclec # Classes

URI http://purl.obolibrary.org/obo/CL_0000188

slow muscle cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000189
Super-classes obo:CL_0008046c
Restrictions obo:RO_0002202op some obo:CL_0000857c
Sub-classes obo:CL_0002211c

fast muscle cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000190
Super-classes obo:CL_0008046c
Restrictions obo:RO_0002202op some obo:CL_0000858c
Sub-classes obo:CL_0002213c
obo:CL_0002212c

smooth muscle cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000192
Super-classes obo:CL_0008000c
obo:CL_0008007c
Restrictions obo:RO_0002202op some obo:CL_0000514c
Sub-classes obo:CL_0002504c
obo:CL_1000281c
obo:CL_0002600c
obo:CL_0002601c
obo:CL_1000702c
obo:CL_0000359c
obo:CL_0000648c
obo:CL_1001064c
obo:CL_0000358c
obo:CL_1000979c
obo:CL_0002599c
obo:CL_1001068c
obo:CL_1001066c
obo:CL_1000443c
obo:CL_0002598c
obo:CL_0000027c
obo:CL_0002597c
obo:CL_1000487c

cardiac muscle cell (sensu Arthopoda)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000193

obsolete nodal cardiac cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000194
Description

Consider CL:0002072.

obsolete Purkinje fiberc # Classes

URI http://purl.obolibrary.org/obo/CL_0000195

flight muscle cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000196
Super-classes obo:CL_0008004c
Restrictions obo:RO_0000053op some obo:PATO_0001908c
obo:RO_0000053op some obo:PATO_0002478c
obo:BFO_0000051op some obo:GO_0030017c

sensory receptor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000197
Super-classes obo:CL_0000003c
Sub-classes obo:CL_0000006c
obo:CL_0000098c

pain receptor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000198
Description

Editor note: request detection of stimulus involved in sensory perception of pain; add develops_from relationship
Super-classes obo:CL_0000006c
Sub-classes obo:CL_0000551c
obo:CL_0000567c

mechanoreceptor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000199
Sub-classes obo:CL_0002487c
obo:CL_0000855c
obo:CL_0000544c

touch receptor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000200

auditory hair cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000202
Description

In mammals these cells are located in the organ of Corti.
Super-classes obo:CL_0002374c
obo:CL_0002491c
Restrictions obo:RO_0002215op some obo:GO_0050910c
obo:BFO_0000050op some obo:UBERON_0002227c
Sub-classes obo:CL_0000601c
obo:CL_0005008c
obo:CL_0000589c

gravity sensitive cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000203

acceleration receptive cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000204
Super-classes obo:CL_0000006c

thermoreceptor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000205
Sub-classes obo:CL_0000587c
obo:CL_0000591c

chemoreceptor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000206
Sub-classes obo:CL_0007017c
obo:CL_0000208c

olfactory receptor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000207
Restrictions obo:BFO_0000050op some obo:UBERON_0005725c
Sub-classes obo:CL_0000848c
obo:CL_0000849c

pH receptor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000208
Super-classes obo:CL_0000206c

taste receptor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000209
Super-classes obo:CL_0002076c
obo:CL_0000098c
Restrictions obo:BFO_0000050op some obo:UBERON_0002025c
Sub-classes obo:CL_0002287c
obo:CL_0002288c
obo:CL_0002289c
obo:CL_0002285c
obo:CL_0002286c

photoreceptor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000210
Super-classes obo:CL_0000006c
Sub-classes obo:CL_0000489c
obo:CL_0000494c
obo:CL_0000488c
obo:CL_0000287c

electrically active cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000211
Super-classes obo:CL_0000003c
Sub-classes obo:CL_0000393c
obo:CL_0000404c

absorptive cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000212
Super-classes obo:CL_0000003c
Sub-classes obo:CL_0000677c

lining cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000213
Super-classes obo:CL_0000215c
Sub-classes obo:CL_0000077c
obo:CL_0000214c
obo:CL_0000115c

synovial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000214
Super-classes obo:CL_0002078c
obo:CL_0000213c
obo:CL_0000153c
Sub-classes obo:CL_0002302c
obo:CL_0002301c

barrier cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000215
Super-classes obo:CL_0000003c
Sub-classes obo:CL_0000216c
obo:CL_0000217c
obo:CL_0000213c

Sertoli cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000216
Super-classes obo:CL_0000630c
obo:CL_0000511c
obo:CL_0000215c
obo:CL_0002625c

insulating cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000217
Super-classes obo:CL_0000215c
Sub-classes obo:CL_0000218c

myelinating Schwann cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000218
Super-classes obo:CL_0000328c
obo:CL_0002573c
obo:CL_0000217c
Restrictions obo:RO_0002202op some obo:CL_0002377c

motile cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000219
Sub-classes obo:CL_0000333c
obo:CL_0000234c
obo:CL_0000732c
obo:CL_0000670c

obsolete cell by lineagec # Classes

URI http://purl.obolibrary.org/obo/CL_0000220
Description

This term was made obsolete because there is no difference in meaning between it and 'cell', as any cell in a multicellular organiam, apart from a zygote, can potentially be classified by its lineage. If you have used this term in annotation, please replace it with cell (CL:0000000), native cell (CL:0000003), or cell in vitro (CL:0001034) as appropriate.

ectodermal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000221
Super-classes obo:CL_0002321c
Restrictions obo:BFO_0000050op some obo:UBERON_0000924c
Sub-classes obo:CL_0000133c
obo:CL_0000114c

mesodermal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000222
Super-classes obo:CL_0002321c
Restrictions obo:BFO_0000050op some obo:UBERON_0000926c
Sub-classes obo:CL_0002418c
obo:CL_0011010c
obo:CL_0007006c
obo:CL_0011007c
obo:CL_0011011c
obo:CL_0002546c

endodermal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000223
Super-classes obo:CL_0002321c
Restrictions obo:BFO_0000050op some obo:UBERON_0000925c

obsolete cell by nuclear numberc # Classes

URI http://purl.obolibrary.org/obo/CL_0000224
Description

This term was made obsolete because there is no difference in meaning between it and 'cell', as any cell can be classified by its nuclear number (note that this term was previously used as a parent class of enucleate cell). If you have used this term in annotation, please replace it with cell (CL:0000000), native cell (CL:0000003), or cell in vitro (CL:0001034) as appropriate.

anucleate cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000225
Sub-classes obo:CL_0002153c

single nucleate cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000226

binucleate cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000227
Sub-classes obo:CL_0000486c
obo:CL_0000603c

multinucleate cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000228
Sub-classes obo:CL_0000411c
obo:CL_0000420c
obo:CL_0000600c

obsolete lymphoblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000229
Description

Refers to an activated mature lymphocyte phenotype rather than a distinct cell type; consider using 'lymphocyte ; CL:0000542' or one of its children instead.

obsolete T lymphoblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000230
Description

Refers to an activated mature T lymphocyte phenotype rather than a distinct cell type; consider using 'T cell ; CL:0000084' or one of its children instead.

obsolete B lymphoblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000231
Description

Refers to an activated mature B lymphocyte phenotype rather than a distinct cell type; consider using 'B cell ; CL:0000236' or one of its children instead.

erythrocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000232
Super-classes obo:CL_0000764c
Restrictions obo:RO_0002202op some obo:CL_0000558c
Sub-classes obo:CL_0000595c
obo:CL_0000562c

plateletc # Classes

URI http://purl.obolibrary.org/obo/CL_0000233
Description

Platelets are reportedly CCR1-positive, CCR2-negative, CCR3-positive, CCR4-positive, CCR5-negative, CCR6-negative, CCR7-negative, CCR8-negative, CCR9-negative, CCR10-negative, CD16-positive, CD23-positive, CD32-positive, CD40-positive, CD41-positive CD42-positive, CD61-positive, CD62P-positive, CD64-positive, CD89-positive, CD102-positive, CD147-positive (activated platelets), CD154-positive (activated platelets), CD162-positive, CD209, CD282-positive, CD284-positive, CD289-positive, CD181-negative, CD182-negative, CD183-negative, CD184-positive, CLEC2-positive, GPVI-positive, JAMC-positive, PAR1-positive, PAR2-negative, PAR3-positive, PAR4-positive, TSP1-positive, and TXA2R-positive. Platelets can reportedly produce CCL2, CCL3, CCL5, CCL7, CCL17, CD40L, CXCL1, CXCL4, CXCL4L1, CXCL5, CXCL7, CXCL8, CXCL12, EGF, factor V, factor VII, factor XI, factor XIII, bFGF, histamine, IGF-1, IL-1beta, PAI-1, PDGF, plasminogen, protein S, serotonin, TGF-beta, TFPI, VEGF, and vWF.
Super-classes obo:CL_0000763c
Restrictions obo:RO_0002215op some obo:GO_0001820c
obo:RO_0002202op some obo:CL_0000556c

phagocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000234
Super-classes obo:CL_0000325c
obo:CL_0000219c
obo:CL_0000473c
Sub-classes obo:CL_0000519c
obo:CL_0000518c

macrophagec # Classes

URI http://purl.obolibrary.org/obo/CL_0000235
Description

Morphology: Diameter 30_M-80 _M, abundant cytoplasm, low N/C ratio, eccentric nucleus. Irregular shape with pseudopods, highly adhesive. Contain vacuoles and phagosomes, may contain azurophilic granules; markers: Mouse & Human: CD68, in most cases CD11b. Mouse: in most cases F4/80+; role or process: immune, antigen presentation, & tissue remodelling; lineage: hematopoietic, myeloid.
Super-classes obo:CL_0000766c
Restrictions obo:RO_0002202op some obo:CL_0000576c
Sub-classes obo:CL_0000861c
obo:CL_0002150c
obo:CL_0000864c
obo:CL_3000001c

B cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000236
Super-classes obo:CL_0000945c
Restrictions obo:RO_0002202op some obo:CL_0000826c
Sub-classes obo:CL_0001201c

keratinizing barrier epithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000237
Super-classes obo:CL_0000311c
obo:CL_0000240c
Restrictions obo:RO_0002202op some obo:CL_0000114c
Sub-classes obo:CL_0002221c
obo:CL_0002637c
obo:CL_0002170c
obo:CL_0000312c

non keratinizing barrier epithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000238
Super-classes obo:CL_0000240c

brush border epithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000239
Super-classes obo:CL_0000075c
Restrictions obo:BFO_0000051op some obo:GO_0005929c
Sub-classes obo:CL_0000584c
obo:CL_0002307c
obo:CL_0002306c

stratified squamous epithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000240
Super-classes obo:CL_0000079c
obo:CL_0000076c
Sub-classes obo:CL_0000237c
obo:CL_0000238c

stratified cuboidal epithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000241
Super-classes obo:CL_0000079c

Merkel cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000242
Super-classes obo:CL_0000123c
obo:CL_0000312c
Restrictions obo:BFO_0000050op some obo:UBERON_0002025c

obsolete glial cell (sensu Vertebrata)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000243
Description

This is a grouping class that is no longer needed or wanted.

transitional epithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000244
Super-classes obo:CL_0000066c
obo:CL_0002371c
Sub-classes obo:CL_0000731c

obsolete passage cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000245
Description

replaced_by: PO:0000353

Mauthner neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000246
Super-classes obo:CL_0000099c

Rohon-Beard neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000247
Super-classes obo:CL_0000531c

obsolete microsporocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000248
Description

replaced_by: PO:0020047

hatching gland cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000249
Super-classes obo:CL_0000151c

obsolete megasporec # Classes

URI http://purl.obolibrary.org/obo/CL_0000250
Description

replaced_by: PO:0020019

extramedullary cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000251
Super-classes obo:CL_0000101c

obsolete microsporec # Classes

URI http://purl.obolibrary.org/obo/CL_0000252
Description

replaced_by: PO:0020048

eurydendroid cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000253
Super-classes obo:CL_0000527c

obsolete egg cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000254
Description

replaced_by: PO:0020094

eukaryotic cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000255
Sub-classes obo:CL_0000257c
obo:CL_0000548c
obo:CL_0000521c

uric acid accumulating cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000256
Super-classes obo:CL_0000325c

Eumycetozoan cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000257
Super-classes obo:CL_0000255c

obsolete fiber tracheidc # Classes

URI http://purl.obolibrary.org/obo/CL_0000258
Description

replaced_by: PO:0000355

obsolete aggregate cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000259

obsolete mucilage cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000260
Description

replaced_by: PO:0000373

obsolete anterior cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000261
Description

Obsoleted becuase this term has an overly general name, no definition, and by it's classification appears to refer to a very specific cell type in dictystelium. If needed, the term should be in DDANAT - probably as a subclass of http://purl.obolibrary.org/obo/DDANAT_0000002

obsolete guard mother cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000262
Description

replaced_by: PO:0000351

obsolete vegetative cell (sensu Mycetozoa)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000263

obsolete phloem initialc # Classes

URI http://purl.obolibrary.org/obo/CL_0000264
Description

replaced_by: PO:0000400

obsolete anterior like cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000265

obsolete meristemoidc # Classes

URI http://purl.obolibrary.org/obo/CL_0000266
Description

replaced_by: PO:0004011

obsolete prespore cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000267

obsolete sieve elementc # Classes

URI http://purl.obolibrary.org/obo/CL_0000268

obsolete prestalk cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000269

obsolete subsidiary cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000270
Description

replaced_by: PO:0000284

obsolete prestalk A cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000271

obsolete cambial initialc # Classes

URI http://purl.obolibrary.org/obo/CL_0000272
Description

replaced_by PO:0000295

obsolete prestalk AB cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000273

obsolete prestalk B cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000275

obsolete sclerenchyma cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000276
Description

replaced_by: PO:0000077

obsolete prestalk I cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000277
Description

This cell type does not exist in Dictyostelium. it has been long deleted in their anatomy ontology.

obsolete central cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000278
Description

replaced_by: PO:0020090

obsolete prestalk 0 cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000279

obsolete generative cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000280
Description

replaced_by: PO:0020097

obsolete pstAB/ALCc # Classes

URI http://purl.obolibrary.org/obo/CL_0000281

obsolete trichomec # Classes

URI http://purl.obolibrary.org/obo/CL_0000282
Description

replaced_by: PO:0000282

obsolete pstO/ALCc # Classes

URI http://purl.obolibrary.org/obo/CL_0000283

obsolete companion cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000284
Description

replaced_by: PO:0000071

obsolete stalk cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000285

hyphal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000286
Super-classes obo:CL_0000521c

eye photoreceptor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000287
Super-classes obo:CL_0000210c
Sub-classes obo:CL_0000707c

obsolete synergidc # Classes

URI http://purl.obolibrary.org/obo/CL_0000288
Description

replaced_by: PO:0000191

obsolete chemotactic amoeboid cell (sensu Mycetozoa)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000289

obsolete xylem fiber cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000290
Description

replaced_by: PO:0000274

obsolete spore (sensu Mycetozoa)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000291

obsolete guard cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000292
Description

replaced_by: PO:0000293

structural cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000293
Super-classes obo:CL_0000003c

obsolete sieve cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000294

somatotropin secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000295
Sub-classes obo:CL_0002312c
obo:CL_0002310c

obsolete vegetative cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000296
Description

replaced_by: PO:0020099

obsolete socket cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000297
Description

replaced_by: PO:0000115

obsolete xylem elementc # Classes

URI http://purl.obolibrary.org/obo/CL_0000298
Description

replaced_by: PO:0000273

obsolete trichoblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000299
Description

Obsoleted. Use trichoblast from the plant ontology (PO:0000262).

gametec # Classes

URI http://purl.obolibrary.org/obo/CL_0000300
Super-classes obo:CL_0000586c
Sub-classes obo:CL_0000675c
obo:CL_0000408c

pole cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000301
Super-classes obo:CL_0000670c

obsolete IgM B cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000302
Description

Not a differentiation state per se; consider using 'B cell ; CL:0000236' or one of its children instead.

obsolete IgG B cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000303
Description

Not a differentiation state per se, and IgG isotypes vary by species; consider using 'B cell ; CL:0000236' or one of its children instead.

obsolete IgA B cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000304
Description

Not a differentiation state per se, and IgA isotypes vary by species. Consider using 'B cell ; CL:0000236' or one of its children instead.

obsolete IgE B cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000305
Description

Not a differentiation state per se; consider using 'B cell ; CL:0000236' or one of its children instead.

crystallin accumulating cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000306
Super-classes obo:CL_0000325c
Sub-classes obo:CL_0000718c
obo:CL_0002222c

tracheal epithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000307
Description

This class is for the vertebrate tracheal structure. For the analagous insect cell type, see 'respiratory tube epithelial cell'
Super-classes obo:CL_0002202c
Restrictions obo:RO_0002202op some obo:CL_0000377c
Sub-classes obo:CL_1000377c
obo:CL_0002207c

metal ion accumulating cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000308
Super-classes obo:CL_0000325c
Sub-classes obo:CL_0000309c
obo:CL_0000310c

copper accumulating cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000309
Super-classes obo:CL_0000308c

iron accumulating cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000310
Super-classes obo:CL_0000308c

keratin accumulating cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000311
Super-classes obo:CL_0000325c
Sub-classes obo:CL_0000237c
obo:CL_0002153c

keratinocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000312
Description

Keratinocytes are reportedly CDw210a-negative, CDw210b-positive, CD281-positive, CD282-positive, CD285-positive, IL22Ra1-positive, Human keratinocytes are reportedly capable of secreting BD-2, BD-3, hCAP-18, CXCL1, CXCL5, CXCL8, elafin, MMP-3, NGAL, PDGF-A, S100A7, S100A8, and S100A9. Transcription factors: STAT3-positive.
Super-classes obo:CL_0000362c
obo:CL_0000237c
Restrictions obo:RO_0002215op some obo:GO_0002776c
obo:RO_0002215op some obo:GO_0090023c
obo:RO_0002215op some obo:GO_0002775c
Sub-classes obo:CL_0002190c
obo:CL_0000649c
obo:CL_0002337c
obo:CL_0002187c
obo:CL_0000242c
obo:CL_0002189c

serous secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000313
Super-classes obo:CL_0000159c
Sub-classes obo:CL_1000330c

milk secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000314
Super-classes obo:CL_0000151c
Sub-classes obo:CL_0002325c

tears secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000315
Super-classes obo:CL_0000151c
Restrictions obo:BFO_0000050op some obo:UBERON_0001817c

obsolete ray initialc # Classes

URI http://purl.obolibrary.org/obo/CL_0000316
Description

replaced_by: PO:0000082

sebum secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000317
Super-classes obo:CL_0000151c
Sub-classes obo:CL_0002140c

sweat secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000318
Super-classes obo:CL_0000151c
obo:CL_0000150c
Sub-classes obo:CL_0002142c
obo:CL_0002146c

mucus secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000319
Super-classes obo:CL_0000159c
Restrictions obo:RO_0002215op some obo:GO_0070254c
Sub-classes obo:CL_0007019c

obsolete megasporocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000320
Description

replaced_by: PO:0000431

seminal fluid secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000321
Super-classes obo:CL_0000151c

pneumocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000322
Super-classes obo:CL_0000066c
Restrictions obo:BFO_0000050op some obo:UBERON_0004821c

lysozyme secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000323
Super-classes obo:CL_0000154c
Sub-classes obo:CL_0000510c

metanephric mesenchyme stem cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000324
Super-classes obo:CL_0000134c
Restrictions obo:RO_0002202op some obo:CL_0000222c

stuff accumulating cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000325
Super-classes obo:CL_0000003c
Sub-classes obo:CL_0000234c
obo:CL_0000147c
obo:CL_0000256c
obo:CL_0000428c
obo:CL_0000328c
obo:CL_0000308c
obo:CL_0000136c
obo:CL_0000326c
obo:CL_0000565c
obo:CL_0000311c
obo:CL_0000306c
obo:CL_0000629c

glycogen accumulating cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000326
Super-classes obo:CL_0000325c

extracellular matrix secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000327
Super-classes obo:CL_0000499c
Sub-classes obo:CL_0000153c
obo:CL_0000660c
obo:CL_0000632c
obo:CL_0000667c
obo:CL_0000708c
obo:CL_0000658c
obo:CL_0000659c

myelin accumulating cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000328
Super-classes obo:CL_0000325c
Sub-classes obo:CL_0000218c

oxygen accumulating cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000329

obsolete collenchymal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000330
Description

replaced_by: PO:0000075

obsolete tracheidc # Classes

URI http://purl.obolibrary.org/obo/CL_0000331
Description

replaced_by: PO:0000301

obsolete atrichoblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000332
Description

replaced_by: PO:0020090

migratory neural crest cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000333
Super-classes obo:CL_0011012c
obo:CL_0000219c
obo:CL_0000003c
Restrictions obo:RO_0002202op some obo:CL_0007004c
Sub-classes obo:CL_0000011c
obo:CL_0000008c
obo:CL_0002607c

vegetative cell (sensu Fungi)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000334
Super-classes obo:CL_0000521c

mesenchyme condensation cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000335
Super-classes obo:CL_0008019c

adrenal medulla chromaffin cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000336
Super-classes obo:CL_0000457c
obo:CL_0000150c
obo:CL_0000166c
Restrictions obo:RO_0002202op some obo:CL_0000011c
Sub-classes obo:CL_0002083c
obo:CL_0002082c

neuroblast (sensu Nematoda and Protostomia)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000338
Super-classes obo:CL_0000047c
Restrictions obo:RO_0002162op only ()
Sub-classes obo:CL_0000405c

glioblast (sensu Vertebrata)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000339
Super-classes obo:CL_0000123c
obo:CL_0000030c
Restrictions obo:RO_0002160op some obo:NCBITaxon_7742c

glioblast (sensu Nematoda and Protostomia)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000340
Super-classes obo:CL_0000030c
obo:CL_0000130c
Restrictions obo:RO_0002162op only ()

pigment cell (sensu Nematoda and Protostomia)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000341
Super-classes obo:CL_0000147c
Restrictions obo:RO_0002162op only ()
Sub-classes obo:CL_0001658c

pigment cell (sensu Vertebrata)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000342
Super-classes obo:CL_0000147c
Restrictions obo:RO_0002160op some obo:NCBITaxon_7742c
Sub-classes obo:CL_0000343c
obo:CL_0002565c

visual pigment cell (sensu Vertebrata)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000343
Super-classes obo:CL_0000149c
obo:CL_0000342c

obsolete non-visual cell (sensu Vertebrata)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000344

dental papilla cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000345
Description

Merge with odontoblast?
Super-classes obo:CL_0008019c
Restrictions obo:BFO_0000050op some obo:UBERON_0001763c
obo:RO_0002202op some obo:CL_0000008c

hair follicle dermal papilla cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000346
Description

Are these really all stem cells?
Super-classes obo:CL_0000134c
Restrictions obo:RO_0002202op some obo:CL_0000333c

scleral cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000347
Restrictions obo:RO_0002202op some obo:CL_0000008c

choroidal cell of the eyec # Classes

URI http://purl.obolibrary.org/obo/CL_0000348
Restrictions obo:RO_0002202op some obo:CL_0000008c

extraembryonic cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000349
Super-classes obo:CL_0002371c
Sub-classes obo:CL_1000274c
obo:CL_0002323c
obo:CL_0000428c
obo:CL_0000351c
obo:CL_0002577c

amnioserosal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000350

trophoblast cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000351
Super-classes obo:CL_0000349c
Restrictions obo:BFO_0000050op some obo:UBERON_0000358c
Sub-classes obo:CL_0011101c
obo:CL_0002219c
obo:CL_0002488c
obo:CL_0008036c
obo:CL_0000523c
obo:CL_0002499c
obo:CL_0002217c

epiblast cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000352
Super-classes obo:CL_0000052c

blastoderm cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000353
Super-classes obo:CL_0000007c

blastemal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000354
Super-classes obo:CL_0000048c

multi-potent skeletal muscle stem cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000355
Description

Multi-potency demonstrated ex vivo. At the time of writing, it is unclear whether the endogenous population differentiates into multiple cell types in vivo.
Super-classes obo:CL_0000048c

hair matrix stem cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000356
Super-classes obo:CL_0000035c

stratified epithelial stem cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000357
Super-classes obo:CL_0000036c
Sub-classes obo:CL_1000083c
obo:CL_1000085c

sphincter associated smooth muscle cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000358
Super-classes obo:CL_0000192c
Sub-classes obo:CL_0002243c

vascular associated smooth muscle cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000359
Super-classes obo:CL_0000192c
Sub-classes obo:CL_0002590c
obo:CL_1001214c
obo:CL_1001221c
obo:CL_0002593c
obo:CL_1001224c
obo:CL_0002594c
obo:CL_0002596c
obo:CL_0002539c
obo:CL_0002595c
obo:CL_1001100c
obo:CL_0002589c
obo:CL_0002588c
obo:CL_0002592c
obo:CL_0002591c
obo:CL_1001217c
obo:CL_1001097c

morula cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000360
Super-classes obo:CL_0000007c
Restrictions obo:BFO_0000050op some obo:UBERON_0000085c

gastrula cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000361
Super-classes obo:CL_0000007c
Restrictions obo:BFO_0000050op some obo:UBERON_0004734c

epidermal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000362
Super-classes obo:CL_0002159c
obo:CL_0002371c
Sub-classes obo:CL_0002562c
obo:CL_0002135c
obo:CL_0000712c
obo:CL_0000463c
obo:CL_0000312c

obsolete axial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000363
Description

replaced_by: PO:0000081

obsolete ray cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000364

animal zygotec # Classes

URI http://purl.obolibrary.org/obo/CL_0000365
Super-classes obo:CL_0000007c
obo:CL_0010017c

obsolete sperm cell (sensu Viridiplantae)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000366
Description

replaced_by: PO:0000084

sheath cell (sensu Nematoda)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000367
Super-classes obo:CL_0000619c

obsolete myrosin cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000368
Description

replaced_by: PO:0000352

obsolete transfer cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000370
Description

replaced_by: PO:0000078

protoplastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000371
Super-classes obo:CL_0000578c
Restrictions obo:RO_0002162op some ()
Sub-classes obo:CL_0000524c

tormogen cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000372
Super-classes obo:CL_0000463c

histoblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000373
Super-classes obo:CL_0000146c

trichogen cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000374
Super-classes obo:CL_0000463c

obsolete osteoprogenitor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000375

humidity receptor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000376
Super-classes obo:CL_0000006c

tracheoblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000377
Super-classes obo:CL_0000069c

support cell (sensu Nematoda and Protostomia)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000378
Super-classes obo:CL_0000630c
Sub-classes obo:CL_0000676c
obo:CL_0000619c
obo:CL_0000382c
obo:CL_0000380c

sensory processing neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000379
Super-classes obo:CL_0000540c

thecogen cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000380
Super-classes obo:CL_0000378c

neurosecretory neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000381
Super-classes obo:CL_0000527c
Sub-classes obo:CL_0011003c

scolopale cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000382
Super-classes obo:CL_0000378c

nephrogenic mesenchyme stem cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000383
Super-classes obo:CL_0000134c
Restrictions obo:RO_0002202op some obo:CL_0000134c

ligament cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000384
Super-classes obo:CL_0000630c
Sub-classes obo:CL_0000407c

prohemocyte (sensu Nematoda and Protostomia)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000385
Super-classes obo:CL_0000390c
Restrictions obo:RO_0002162op only ()

attachment cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000386
Super-classes obo:CL_0000630c
Sub-classes obo:CL_0000388c

hemocyte (sensu Arthropoda)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000387
Super-classes obo:CL_0000519c
Restrictions obo:RO_0002160op some obo:NCBITaxon_6656c
obo:RO_0002215op some obo:GO_0035010c
obo:RO_0002202op some obo:CL_0000385c
Sub-classes obo:CL_0000736c
obo:CL_0000394c
obo:CL_0000391c
obo:CL_0000395c
obo:CL_0000398c
obo:CL_0011008c
obo:CL_0000735c

tendon cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000388
Super-classes obo:CL_0000386c
obo:CL_0000135c

socket cell (sensu Nematoda)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000389
Super-classes obo:CL_0000658c
obo:CL_0000619c

blood cell (sensu Nematoda and Protostomia)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000390
Super-classes obo:CL_0000081c
Restrictions obo:RO_0002162op only ()
Sub-classes obo:CL_0000385c

podocyte (sensu Diptera)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000391
Super-classes obo:CL_0000387c
Restrictions obo:RO_0002202op some obo:CL_0000394c
Sub-classes obo:CL_0000392c

crystal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000392
Super-classes obo:CL_0000391c
Sub-classes obo:CL_0000716c
obo:CL_0000715c

electrically responsive cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000393
Super-classes obo:CL_0000211c
Sub-classes obo:CL_0000187c
obo:CL_0000165c
obo:CL_0000540c

plasmatocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000394
Super-classes obo:CL_0000387c
Sub-classes obo:CL_0000733c
obo:CL_0011009c
obo:CL_0000396c
obo:CL_0000734c
obo:CL_0000401c

procrystal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000395
Super-classes obo:CL_0000387c

lamellocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000396
Super-classes obo:CL_0000394c

ganglion interneuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000397
Super-classes obo:CL_0000099c

polygonal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000398
Super-classes obo:CL_0000387c

obsolete phloem elementc # Classes

URI http://purl.obolibrary.org/obo/CL_0000399

obsolete pavement cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000400
Description

replaced_by: PO:0000332

macrophage (sensu Diptera)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000401
Super-classes obo:CL_0000394c

CNS interneuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000402
Super-classes obo:CL_0000099c
obo:CL_0000117c
Sub-classes obo:CL_0000406c
obo:CL_0005000c
obo:CL_0000410c

electrically signaling cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000404
Super-classes obo:CL_0000211c
Sub-classes obo:CL_0000540c

neuroepidermoblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000405
Super-classes obo:CL_0000338c

CNS short range interneuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000406
Super-classes obo:CL_0000402c

scolopidial ligament cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000407
Super-classes obo:CL_0000384c

male gametec # Classes

URI http://purl.obolibrary.org/obo/CL_0000408
Super-classes obo:CL_0000300c
obo:CL_0000015c
Sub-classes obo:CL_0000019c

scolopidial sheath cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000409
Super-classes obo:CL_0000618c

CNS long range interneuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000410
Super-classes obo:CL_0000402c

Caenorhabditis hypodermal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000411
Description

This term was originally added to CL for parity with the Worm anatomy ontology, which is dedicated to C elegans. It is not clear if it makes sense to try and generalize the concept and include in CL, and this term may be obsoleted in future. Note there is no similarity to the hypodermis in vertebrates.
Super-classes obo:CL_0002371c
obo:CL_0000228c
obo:CL_0000076c
Restrictions obo:RO_0002162op some obo:NCBITaxon_6237c

polyploid cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000412
Super-classes obo:CL_0000003c
Sub-classes obo:CL_0000416c
obo:CL_0000417c
obo:CL_0000026c

haploid cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000413

obsolete cell by ploidyc # Classes

URI http://purl.obolibrary.org/obo/CL_0000414
Description

This term was made obsolete because there is no difference in meaning between it and 'cell', as any cell with chromosomes can be classified by its ploidy. If you have used this term in annotation, please replace it with cell (CL:0000000), native cell (CL:0000003), eukaryotic cell (CL:0000255) or cell in vitro (CL:0001034) as appropriate.

diploid cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000415
Super-classes obo:CL_0000003c

polytene cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000416
Super-classes obo:CL_0000412c

endopolyploid cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000417
Super-classes obo:CL_0000412c
Sub-classes obo:CL_0000182c

arcade cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000418
Super-classes obo:CL_0002371c
obo:CL_0000066c
Restrictions obo:RO_0002162op some obo:NCBITaxon_6237c

seam cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000419
Super-classes obo:CL_0000036c

syncytial epithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000420
Super-classes obo:CL_0002371c
obo:CL_0000228c
obo:CL_0000066c

coelomocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000421
Super-classes obo:CL_0000080c
obo:CL_0000519c

mitogenic signaling cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000422
Super-classes obo:CL_0000003c
Sub-classes obo:CL_0000423c
obo:CL_0000661c

tip cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000423
Super-classes obo:CL_0000422c

excretory cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000424
Super-classes obo:CL_0000151c
Sub-classes obo:CL_0002522c

pore cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000425
Super-classes obo:CL_0000658c

obsolete scaffold cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000426
Description

This is a cell used in tissue engineering and is out of scope for CL.

GLR cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000427
Super-classes obo:CL_0002320c

yolk cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000428
Super-classes obo:CL_0000325c
obo:CL_0000349c

imaginal disc cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000429
Super-classes obo:CL_0000146c

xanthophore cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000430
Super-classes obo:CL_0000147c
Restrictions obo:RO_0002202op some obo:CL_0005002c

iridophorec # Classes

URI http://purl.obolibrary.org/obo/CL_0000431
Super-classes obo:CL_0000147c
Restrictions obo:RO_0002202op some obo:CL_0005001c

reticular cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000432
Super-classes obo:CL_0000057c
Sub-classes obo:CL_1000489c

obsolete functional megasporec # Classes

URI http://purl.obolibrary.org/obo/CL_0000433
Description

replaced_by: PO:0000244

eccrine cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000434
Super-classes obo:CL_0000150c
Sub-classes obo:CL_0002142c
obo:CL_0002146c

alkali secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000435
Super-classes obo:CL_0000151c

vaginal lubricant secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000436
Super-classes obo:CL_0000151c
Restrictions obo:BFO_0000050op some obo:UBERON_0000996c

gonadtrophc # Classes

URI http://purl.obolibrary.org/obo/CL_0000437
Super-classes obo:CL_0000438c
obo:CL_0000639c

luteinizing hormone secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000438
Sub-classes obo:CL_0000437c

prolactin secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000439
Sub-classes obo:CL_0002310c
obo:CL_0002311c

melanocyte stimulating hormone secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000440

follicle stem cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000441
Super-classes obo:CL_0000036c

follicular dendritic cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000442
Description

Due to its unique lineage and distinct function, this is not a type of dendritic cell; CL:0000451.
Super-classes obo:CL_0000473c

calcitonin secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000443
Sub-classes obo:CL_0000570c

obliquely striated muscle cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000444
Description

Examples include the somatic muscles of nemotodes and cephalopods.

apoptosis fated cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000445
Super-classes obo:CL_0000003c

chief cell of parathyroid glandc # Classes

URI http://purl.obolibrary.org/obo/CL_0000446
Super-classes obo:CL_0002260c
obo:CL_0000167c
Sub-classes obo:CL_0002143c
obo:CL_0002197c
obo:CL_0002147c
obo:CL_0002141c
obo:CL_0002229c

carbohydrate secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000447
Super-classes obo:CL_0000151c
Sub-classes obo:CL_0000153c

white fat cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000448
Super-classes obo:CL_0000136c
Restrictions obo:BFO_0000050op some obo:UBERON_0001347c
obo:RO_0002202op some obo:CL_0002334c

brown fat cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000449
Super-classes obo:CL_0000136c
Restrictions obo:BFO_0000050op some obo:UBERON_0001348c
obo:RO_0002202op some obo:CL_0002335c

dendritic cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000451
Super-classes obo:CL_0000738c
Sub-classes obo:CL_0000784c
obo:CL_0001056c
obo:CL_0000990c

thyroid hormone secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000452
Super-classes obo:CL_0000163c

Langerhans cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000453
Description

Originally described in the dendritic cell ontology (DC_CL:0000021 )(PMID:19243617). These cells are also CD1a-high, CD14-negative, CD207-positive (langerin), CD324-positive (E-cadherin), and DCIR-positive. They reside in the epidermis.
Super-classes obo:CL_0000990c
Restrictions obo:RO_0002202op some obo:CL_0000763c
Sub-classes obo:CL_0001014c
obo:CL_0002457c
obo:CL_0001015c

epinephrine secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000454
Super-classes obo:CL_0000457c
Sub-classes obo:CL_0002517c

obsolete starch sheath cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000455
Description

replaced_by: PO:0004531

mineralocorticoid secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000456
Sub-classes obo:CL_0002099c

biogenic amine secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000457
Super-classes obo:CL_0000151c
Sub-classes obo:CL_0000336c
obo:CL_0002274c
obo:CL_0000459c
obo:CL_0000454c
obo:CL_0000458c

serotonin secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000458
Super-classes obo:CL_0000457c
Sub-classes obo:CL_0002281c
obo:CL_0000577c
obo:CL_0002270c
obo:CL_0002273c

noradrenergic cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000459
Super-classes obo:CL_0000457c
Sub-classes obo:CL_0002515c

glucocorticoid secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000460
Sub-classes obo:CL_0002136c

adepithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000462
Super-classes obo:CL_0000680c

epidermal cell (sensu arthropoda)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000463
Description

While insect epidermis is generally columnar/cuboidal, there are certainly well studied cases where it is not (e.g.- Rhodnius prolixus when starved). So it would be safer to add this as a differentium for particular species where this is known. -DSJ.
Super-classes obo:CL_0000362c
Restrictions obo:RO_0002202op some obo:CL_0000464c
Sub-classes obo:CL_0000372c
obo:CL_0000374c

epidermoblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000464
Super-classes obo:CL_0000710c
obo:CL_0000055c
Restrictions obo:RO_0002202op some obo:CL_0000114c

cardioblast (sensu Arthropoda)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000465
Super-classes obo:CL_0010021c

adrenocorticotropic hormone secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000467
Sub-classes obo:CL_0002309c

neuroglioblast (sensu Nematoda and Protostomia)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000468
Super-classes obo:CL_0000047c
Restrictions obo:RO_0002162op only ()
Sub-classes obo:CL_0000662c

ganglion mother cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000469
Super-classes obo:CL_0011020c
Restrictions obo:RO_0002202op some obo:CL_0000338c

digestive enzyme secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000470
Super-classes obo:CL_0000154c

obsolete chlorenchyma cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000472
Description

replaced_by: PO:0000076

defensive cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000473
Super-classes obo:CL_0000003c
Sub-classes obo:CL_0000442c
obo:CL_0000682c
obo:CL_0007021c
obo:CL_0000234c

pericardial nephrocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000474
Super-classes obo:CL_0002520c
obo:CL_0000519c

obsolete degenerate megasporec # Classes

URI http://purl.obolibrary.org/obo/CL_0000475
Description

replaced_by: PO:0000245

thyrotrophc # Classes

URI http://purl.obolibrary.org/obo/CL_0000476
Super-classes obo:CL_0000639c
Restrictions obo:RO_0002215op some obo:GO_0070460c

ovarian follicle cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000477
Description

Editors note: check this. Currently used in goxp
Super-classes obo:CL_0000066c
Restrictions obo:BFO_0000050op some obo:UBERON_0000992c
obo:RO_0002202op some obo:CL_0000441c
Sub-classes obo:CL_0000579c
obo:CL_0000671c

oxytocin stimulating hormone secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000478
Super-classes obo:CL_0000167c

vasopressin stimulating hormone secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000479
Super-classes obo:CL_0000167c

secretin stimulating hormone secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000480
Super-classes obo:CL_0000167c

cholecystokin stimulating hormone secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000481
Super-classes obo:CL_0000167c

juvenile hormone secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000482

bombesin stimulating hormone secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000483
Super-classes obo:CL_0000167c

connective tissue type mast cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000484
Description

They are CD88-positive. The cytoplasmic granules contain high levels of histamine and heparin (mouse) or major neutral proteases, tryptase, chymase, carboxypeptidase A, and cathepsin G (humans). Reportedly, they cannot produce leukotrienes (LTC4) and IL-4. They are reportedly very heterogeneous depending upon location and can convert to the MC(T) phenotype.
Super-classes obo:CL_0000097c

mucosal type mast cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000485
Description

They are CD88-negative. The cytoplasmic granules contain low levels of histamine and high levels of chondroitin sulfate (mouse) or major neutral proteases and tryptase (humans). Additionally, they can produce leukotrienes (LTC4), IL-5, IL-6, and low levels of IL-4. They are reportedly very heterogeneous depending upon location and can convert to the MC(T) phenotype.
Super-classes obo:CL_0000097c

garland cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000486
Super-classes obo:CL_0000227c
obo:CL_0000519c
obo:CL_0002520c

oenocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000487
Super-classes obo:CL_0000151c
Restrictions obo:RO_0002162op some obo:NCBITaxon_6656c

visible light photoreceptor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000488
Super-classes obo:CL_0000210c
Sub-classes obo:CL_0000702c
obo:CL_0000705c
obo:CL_0000687c
obo:CL_0000490c
obo:CL_0000697c
obo:CL_0000690c
obo:CL_0000694c
obo:CL_0000709c

scotopic photoreceptor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000489
Super-classes obo:CL_0000210c

photopic photoreceptor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000490
Super-classes obo:CL_0000488c
Sub-classes obo:CL_0000497c
obo:CL_0000495c
obo:CL_0000496c

obsolete cytotoxic T cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000491
Description

This term had an incorrect definition and was overly broad. Consider using 'cytotoxic T cell ; CL:0000910' (in most cases) or another lymphocyte cell type if cytotoxicity is shown to be part of the cell's phenotype in a particular experimental situation.

CD4-positive helper T cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000492
Super-classes obo:CL_0000624c
Restrictions cl:has_completedop some obo:GO_0030217c
obo:RO_0002202op some obo:CL_0000896c
Sub-classes obo:CL_0001042c
obo:CL_0000546c
obo:CL_0000899c
obo:CL_0002038c
obo:CL_0002061c
obo:CL_0000545c

obsolete regulatory T cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000493
Description

This term was defined too narrowly; consider using the term 'regulatory T cell ; CL:0000815' instead.

UV sensitive photoreceptor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000494
Super-classes obo:CL_0000210c
Sub-classes obo:CL_0000707c

blue sensitive photoreceptor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000495
Super-classes obo:CL_0000490c

green sensitive photoreceptor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000496
Super-classes obo:CL_0000490c

red sensitive photoreceptor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000497
Super-classes obo:CL_0000490c

inhibitory interneuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000498
Super-classes obo:CL_0000099c
Sub-classes obo:CL_0011005c

stromal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000499
Super-classes obo:CL_0002320c
Restrictions obo:RO_0002202op some obo:CL_0000134c
Sub-classes obo:CL_0002255c
obo:CL_0000142c
obo:CL_0002574c
obo:CL_0000135c
obo:CL_0002622c
obo:CL_2000002c
obo:CL_0000503c
obo:CL_0000327c

follicular epithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000500
Super-classes obo:CL_0002371c
obo:CL_0000066c
Sub-classes obo:CL_0000659c

granulosa cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000501
Super-classes obo:CL_0002174c
obo:CL_0000174c

type D enteroendocrine cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000502
Super-classes obo:CL_0000164c
Restrictions obo:RO_0002215op some obo:GO_0070253c
Sub-classes obo:CL_0002267c
obo:CL_0002265c
obo:CL_0000173c
obo:CL_0002266c

theca cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000503
Super-classes obo:CL_0000593c
obo:CL_0000499c
Restrictions obo:BFO_0000050op some obo:UBERON_0001305c

enterochromaffin-like cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000504
Description

Consider enterochromaffin cell (CL:0002065). For several years this cell type was "enterochromaffin cell" despite a MESH dbxref and a free text definition that clearly meant enterochromaffin-like cell.
Super-classes obo:CL_0002274c
obo:CL_0000164c

substance P secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000505
Super-classes obo:CL_0000167c
Sub-classes obo:CL_0002271c

enkephalin secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000506
Super-classes obo:CL_0000507c
Sub-classes obo:CL_0000577c
obo:CL_0000508c

endorphin secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000507
Super-classes obo:CL_0000167c
Sub-classes obo:CL_0000506c

type G enteroendocrine cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000508
Super-classes obo:CL_0000164c
obo:CL_0000509c
obo:CL_0000506c
Restrictions obo:BFO_0000050op some obo:UBERON_0004997c

gastrin secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000509
Super-classes obo:CL_0000167c
Sub-classes obo:CL_0002282c
obo:CL_0000508c

paneth cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000510
Super-classes obo:CL_0000323c
obo:CL_0000150c
Restrictions obo:BFO_0000050op some obo:UBERON_0001277c
Sub-classes obo:CL_1000343c
obo:CL_0002624c

androgen binding protein secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000511
Super-classes obo:CL_0000154c
Sub-classes obo:CL_0000216c

paracrine cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000512
Super-classes obo:CL_0000151c

cardiac muscle myoblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000513
Super-classes obo:CL_0000056c

smooth muscle myoblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000514
Super-classes obo:CL_0000056c

skeletal muscle myoblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000515
Super-classes obo:CL_0000056c
Restrictions obo:RO_0002202op some obo:CL_0000355c

perineuronal satellite cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000516
Super-classes obo:CL_0000123c
Restrictions obo:RO_0002202op some obo:CL_0000339c

macrophage derived foam cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000517
Super-classes obo:CL_0000891c
Restrictions obo:RO_0002202op some obo:CL_0000235c

phagocyte (sensu Vertebrata)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000518
Super-classes obo:CL_0000234c
Restrictions obo:RO_0002160op some obo:NCBITaxon_7742c
Sub-classes obo:CL_0000113c
obo:CL_0000783c

phagocyte (sensu Nematoda and Protostomia)c # Classes

URI http://purl.obolibrary.org/obo/CL_0000519
Super-classes obo:CL_0000234c
Restrictions obo:RO_0002162op only ()
Sub-classes obo:CL_0000421c
obo:CL_0000387c
obo:CL_0000486c
obo:CL_0000474c

prokaryotic cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000520
Super-classes obo:CL_0000003c
Restrictions obo:RO_0002162op only ()
Sub-classes obo:CL_0002630c
obo:CL_0000724c
obo:CL_0000563c

fungal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000521
Super-classes obo:CL_0000255c
Sub-classes obo:CL_0002369c
obo:CL_0000600c
obo:CL_0002674c
obo:CL_0002675c
obo:CL_0000286c
obo:CL_0000334c

obsolete sporec # Classes

URI http://purl.obolibrary.org/obo/CL_0000522

mononuclear cytotrophoblast cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000523
Super-classes obo:CL_0000351c

spheroplastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000524
Super-classes obo:CL_0000371c

syncytiotrophoblast cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000525
Restrictions obo:BFO_0000050op some obo:UBERON_0010005c

afferent neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000526
Super-classes obo:CL_0000540c
Sub-classes obo:CL_0000101c

efferent neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000527
Super-classes obo:CL_0000540c
Sub-classes obo:CL_0000381c
obo:CL_0000253c
obo:CL_0000121c
obo:CL_0000100c

nitrergic neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000528
Super-classes obo:CL_0000540c

pigmented epithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000529
Super-classes obo:CL_0000710c
Sub-classes obo:CL_0002303c

primary neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000530
Super-classes obo:CL_0000540c
Sub-classes obo:CL_0000533c
obo:CL_0000534c

primary sensory neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000531
Sub-classes obo:CL_0000247c

CAP motoneuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000532
Super-classes obo:CL_0000533c

primary motor neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000533
Super-classes obo:CL_0000530c
obo:CL_0000100c
Sub-classes obo:CL_0000532c

primary interneuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000534
Super-classes obo:CL_0000099c
obo:CL_0000530c

secondary neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000535
Super-classes obo:CL_0000540c

secondary motor neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000536

obsolete antipodal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000537
Description

replaced_by: PO:0020093

obsolete epidermal initialc # Classes

URI http://purl.obolibrary.org/obo/CL_0000538
Description

replaced_by: PO:0000349

obsolete idioblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000539

neuronc # Classes

URI http://purl.obolibrary.org/obo/CL_0000540
Description

These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma.
Super-classes obo:CL_0000404c
obo:CL_0002319c
obo:CL_0000393c
Restrictions obo:RO_0002215op some obo:GO_0019226c
Sub-classes obo:CL_0000112c
obo:CL_0000117c
obo:CL_0000099c
obo:CL_0007011c
obo:CL_0000102c
obo:CL_0000028c
obo:CL_0000106c
obo:CL_0011100c
obo:CL_0000527c
obo:CL_1001505c
obo:CL_0000379c
obo:CL_0000679c
obo:CL_0000029c
obo:CL_0000528c
obo:CL_0000107c
obo:CL_0000850c
obo:CL_0000116c
obo:CL_0000700c
obo:CL_0000105c
obo:CL_1001509c
obo:CL_0011111c
obo:CL_0000530c
obo:CL_0000535c
obo:CL_1001474c
obo:CL_0000526c
obo:CL_0000678c
obo:CL_0000109c
obo:CL_0000110c
obo:CL_0011113c
obo:CL_0011109c
obo:CL_0000111c
obo:CL_0011112c
obo:CL_0011110c
obo:CL_0000617c
obo:CL_1001503c

melanoblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000541
Description

Derived from UBERON:0002342 neural crest.
Super-classes obo:CL_0000055c
obo:CL_0002371c
Restrictions obo:RO_0002202op some obo:CL_0000333c

lymphocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000542
Description

Editors note: consider adding taxon constraint to vertebrata (PMID:18025161)
Super-classes obo:CL_0000738c
Restrictions obo:RO_0002202op some obo:CL_0000051c
Sub-classes obo:CL_0002679c
obo:CL_0000945c
obo:CL_0000084c

obsolete sieve tube memberc # Classes

URI http://purl.obolibrary.org/obo/CL_0000543
Description

replaced_by: PO:0000289

slowly adapting mechanoreceptor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000544
Super-classes obo:CL_0000199c

T-helper 1 cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000545
Description

This cell type is compatible with the HIPC Lyoplate markers for 'Th1 CD4+ T cell', but its logical definition includes additional known characteristics of T-helper 1 T cells.
Super-classes obo:CL_0000492c
Restrictions obo:RO_0002202op some obo:CL_0000896c

T-helper 2 cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000546
Description

This cell type is compatible with the HIPC Lyoplate markers for 'non-Th1/Th17 CD4+ T cell' (see CL:0001051), but includes the additional necessary and sufficient conditions to allow classification as a T-helper 2 T cell.
Super-classes obo:CL_0000492c
Restrictions obo:RO_0002202op some obo:CL_0000896c

proerythroblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000547
Super-classes obo:CL_0000764c
Restrictions obo:RO_0002202op some obo:CL_0000038c
Sub-classes obo:CL_0002012c
obo:CL_0002004c

animal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000548
Super-classes obo:CL_0000255c
Restrictions obo:RO_0002160op some obo:NCBITaxon_33208c
Sub-classes obo:CL_1000497c
obo:CL_0001035c
obo:CL_1000601c
obo:CL_0002320c
obo:CL_0000066c
obo:CL_1001320c
obo:CL_0000185c
obo:CL_0007022c
obo:CL_0002321c
obo:CL_0002319c
obo:CL_0000988c
obo:CL_1000600c
obo:CL_0002494c
obo:CL_0000186c
obo:CL_0000187c
obo:CL_1001319c
obo:CL_0010016c

basophilic erythroblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000549
Super-classes obo:CL_0000765c
Restrictions obo:RO_0002202op some obo:CL_0000547c
Sub-classes obo:CL_0002014c
obo:CL_0002013c

polychromatophilic erythroblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000550
Super-classes obo:CL_0000765c
Restrictions obo:RO_0002202op some obo:CL_0000549c
Sub-classes obo:CL_0002015c
obo:CL_0002016c

unimodal nocireceptorc # Classes

URI http://purl.obolibrary.org/obo/CL_0000551
Super-classes obo:CL_0000198c

orthochromatic erythroblastc # Classes

URI http://purl.obolibrary.org/obo/CL_0000552
Super-classes obo:CL_0000765c
Restrictions obo:RO_0002202op some obo:CL_0000550c
Sub-classes obo:CL_0002017c
obo:CL_0002018c

megakaryocyte progenitor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000553
Description

Lineage negative is described here as CD2-negative, CD3-negative, CD4-negative, CD5-negative, CD8a-negative, CD14-negative, CD19-negative, CD20-negative, CD56-negative, Ly6g-negative, and Ter119-negative.
Super-classes obo:CL_0000839c
Restrictions obo:RO_0002202op some obo:CL_0000050c
Sub-classes obo:CL_0002025c
obo:CL_0002024c
obo:CL_0002023c

gastrin stimulating hormone secreting cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000554
Super-classes obo:CL_0000167c

neuronal brush cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000555
Super-classes obo:CL_0000117c

megakaryocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000556
Description

Megakaryocytes are reportedly CD181-positive and CD182-positive.
Super-classes obo:CL_0000763c
Restrictions obo:RO_0002202op some obo:CL_0000553c
Sub-classes obo:CL_0002026c
obo:CL_0002027c

granulocyte monocyte progenitor cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000557
Description

Originally described in the dendritic cell ontology (DC_CL:0000042)(PMID:19243617). GMPs are reportedly CD16-positive, CD32-positive, CD34-positive, CD38-positive, CD45RA-positive, CD110-negative, CD117-positive, CD123-positive, and SCA1-negative.
Super-classes obo:CL_0002032c
Restrictions obo:RO_0002202op some obo:CL_0000049c
Sub-classes obo:CL_0002002c
obo:CL_0002001c

reticulocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000558
Super-classes obo:CL_0000764c
Restrictions obo:RO_0002202op some obo:CL_0000552c
Sub-classes obo:CL_0002421c
obo:CL_0002422c

promonocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000559
Description

Morphology: Mononuclear cell, diameter 14-18 _M, fine azurophilic granules; markers: CD11b (shared with many other myeloid cells); location: Adult: bone marrow; Fetal: Liver, Yolk Sac; role or process: hematopoiesis, monocyte development; lineage: hematopoietic, myeloid.
Super-classes obo:CL_0002194c
Restrictions obo:RO_0002202op some obo:CL_0000040c

band form neutrophilc # Classes

URI http://purl.obolibrary.org/obo/CL_0000560
Description

Found in the Band 1 fraction.
Super-classes obo:CL_0000096c
Restrictions obo:RO_0002202op some obo:CL_0000582c

amacrine cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000561
Description

Not clear if this term overlaps with retinal bipolar neuron (CL:0000748).
Super-classes obo:CL_0000099c
Restrictions obo:RO_0002120op some obo:CL_0000740c

nucleate erythrocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000562
Super-classes obo:CL_0000232c
Restrictions obo:RO_0002202op some obo:CL_0002421c

endosporec # Classes

URI http://purl.obolibrary.org/obo/CL_0000563
Super-classes obo:CL_0000520c

neutrophilic promyelocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000564
Description

These cells are CD11b-negative, CD15-positive, CD16-negative, CD49d-positive, CD68-positive, CD35-negative, and fMLP receptor-negative. They are found in the Band 3 fraction.
Super-classes obo:CL_0000836c
Restrictions obo:RO_0002202op some obo:CL_0000042c

fat body cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000565
Super-classes obo:CL_0000325c

angioblastic mesenchymal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000566
Description

These cells are reportedly CD31-positive, CD34-positive, CD144-positive, CD309-positive, and TAL1-positive.
Super-classes obo:CL_0000134c
Restrictions obo:RO_0002202op some obo:CL_0000134c
Sub-classes obo:CL_0002619c

polymodal nocireceptorc # Classes

URI http://purl.obolibrary.org/obo/CL_0000567
Super-classes obo:CL_0000198c

amine precursor uptake and decarboxylation cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000568
Super-classes obo:CL_0000165c
Sub-classes obo:CL_0000166c

cardiac mesenchymal cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000569

parafollicular cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000570
Super-classes obo:CL_0000443c
obo:CL_0000710c
Restrictions obo:BFO_0000050op some obo:UBERON_0001747c
obo:RO_0002202op some obo:CL_0000333c

leucophorec # Classes

URI http://purl.obolibrary.org/obo/CL_0000571
Super-classes obo:CL_0000147c
Restrictions obo:RO_0002202op some obo:CL_0005003c

retinal cone cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000573
Super-classes obo:CL_0010009c
Restrictions obo:RO_0002202op some obo:CL_0002672c

erythrophorec # Classes

URI http://purl.obolibrary.org/obo/CL_0000574
Super-classes obo:CL_0000147c
Restrictions obo:RO_0002202op some obo:CL_0005004c

corneal epithelial cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000575
Super-classes obo:CL_0000076c
obo:CL_0002371c
obo:CL_0002159c

monocytec # Classes

URI http://purl.obolibrary.org/obo/CL_0000576
Description

Morphology: Mononuclear cell, diameter, 14 to 20 _M, N/C ratio 2:1-1:1. Nucleus may appear in variety of shapes: round, kidney, lobulated, or convoluted. Fine azurophilic granules present; markers: CD11b (shared with other myeloid cells), human: CD14, mouse: F4/80-mid,GR1-low; location: Blood, but can be recruited into tissues; role or process: immune & tissue remodelling; lineage: hematopoietic, myeloid.
Super-classes obo:CL_0000766c
Restrictions obo:RO_0002202op some obo:CL_0000559c
Sub-classes obo:CL_0002393c
obo:CL_0001054c
obo:CL_0001022c
obo:CL_0000860c
obo:CL_0000875c

type EC enteroendocrine cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000577
Super-classes obo:CL_0000506c
obo:CL_0000458c
obo:CL_0000164c
obo:CL_0000166c
Restrictions obo:BFO_0000050op some obo:UBERON_0004786c
Sub-classes obo:CL_0002270c
obo:CL_0002273c
obo:CL_0002271c

experimentally modified cell in vitroc # Classes

URI http://purl.obolibrary.org/obo/CL_0000578
Description

This class has been re-labeled to imply reference only to in vitro experimentally modified cells, similarly, the definition has been slightly updated to reflect this. 'experimentally modified cell' refers only to cells in vitro, and not modified in vivo/in environment cells. There is currently no class r