made by pyLODE 2.10.0

{no title found}

Metadata

URI
http://purl.obolibrary.org/obo/duo.owl
Creator(s)
Melanie Courtot
Contributor(s)
Contributors to the GA4GH Data Use Ontology workstream are listed at https://github.com/EBISPOT/DUO/blob/master/README.md#contributions
Version URI
http://purl.obolibrary.org/obo/duo/releases/2021-02-23/duo.owl
Imports
obo:iao.owl
License
http://creativecommons.org/licenses/by/4.0/
Ontology RDF
RDF (turtle)

Table of Contents

  1. Classes
  2. Object Properties
  3. Annotation Properties
  4. Namespaces
  5. Legend

Overview

Pictures say 1,000 words
Figure 1: Ontology overview

Classes

data use permissionc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000001
Super-classes obo:IAO_0000027c
Sub-classes obo:DUO_0000042c
obo:DUO_0000011c
obo:DUO_0000004c

obsolete consent code primary categoryc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000002
Super-classes oboInOwl:ObsoleteClassc

obsolete consent code secondary categoryc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000003
Super-classes oboInOwl:ObsoleteClassc

no restrictionc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000004
Description

20180907, Meeting Moran Melanie: This is to be thought about more carefully - what is the intent when using 'no restriction' as usually users still need to be researchers.

Super-classes obo:DUO_0000001c

population origins or ancestry research prohibitedc # Classes

URI http://purl.obolibrary.org/obo/DUO_00000044
Super-classes obo:DUO_0000017c

obsolete general research use and clinical carec # Classes

URI http://purl.obolibrary.org/obo/DUO_0000005
Description

This term includes clinical care, which was not defined in the original consent codes paper. This term does not have a usage in our current use cases and we recommend using DUO:0000042, General Research Use, instead

Super-classes oboInOwl:ObsoleteClassc

health or medical or biomedical researchc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000006
Super-classes obo:DUO_0000042c
Sub-classes obo:DUO_0000007c

disease specific researchc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000007
Description

This term should be coupled with a term describing a disease from an ontology to specify the disease the restriction applies to.

DUO recommends MONDO be used, to provide the basis for automated evaluation. For more information see https://github.com/EBISPOT/DUO/blob/master/MONDO_Overview.md

Other resources, such as the Disease Ontology, HPO, SNOMED-CT or others, can also be used. When those other resources are being used, this may require an extra mapping step to leverage automated matching algorithms.

Super-classes obo:DUO_0000006c
Restrictions obo:DUO_0000010op some obo:MONDO_0000001c

population origins or ancestry research onlyc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000011
Super-classes obo:DUO_0000001c

research specific restrictionsc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000012
Super-classes obo:DUO_0000017c
Restrictions obo:DUO_0000010op some obo:topic_0003c

obsolete research use onlyc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000014
Description

Deprecated as GRU-CC was split into GRU and CC, so this is not applicable anymore as a qualifier of GRU-CC

Super-classes oboInOwl:ObsoleteClassc

no general methods researchc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000015
Super-classes obo:DUO_0000017c

genetic studies onlyc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000016
Super-classes obo:DUO_0000017c

data use modifierc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000017
Super-classes obo:IAO_0000027c
Sub-classes obo:DUO_0000019c
obo:DUO_0000015c
obo:DUO_0000021c
obo:DUO_0000022c
obo:DUO_0000043c
obo:DUO_0000025c
obo:DUO_0000018c
obo:DUO_0000016c
obo:DUO_0000028c
obo:DUO_0000029c
obo:DUO_00000044c
obo:DUO_0000012c
obo:DUO_0000020c
obo:DUO_0000024c
obo:DUO_0000026c
obo:DUO_0000027c

not for profit, non commercial use onlyc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000018
Super-classes obo:DUO_0000017c
Sub-classes obo:DUO_0000045c
obo:DUO_0000046c

publication requiredc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000019
Super-classes obo:DUO_0000017c

collaboration requiredc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000020
Description

This could be coupled with a string describing the primary study investigator(s).

Super-classes obo:DUO_0000017c

ethics approval requiredc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000021
Super-classes obo:DUO_0000017c

geographical restrictionc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000022
Description

This should be coupled with an ontology term describing the geographical location the restriction applies to.

Super-classes obo:DUO_0000017c
Restrictions obo:DUO_0000010op some obo:GAZ_00000448c

publication moratoriumc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000024
Description

This should be coupled with a date specified as ISO8601

Super-classes obo:DUO_0000017c

time limit on usec # Classes

URI http://purl.obolibrary.org/obo/DUO_0000025
Description

This should be coupled with an integer value indicating the number of months.

Super-classes obo:DUO_0000017c

user specific restrictionc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000026
Super-classes obo:DUO_0000017c

project specific restrictionc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000027
Super-classes obo:DUO_0000017c

institution specific restrictionc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000028
Super-classes obo:DUO_0000017c

return to database or resourcec # Classes

URI http://purl.obolibrary.org/obo/DUO_0000029
Super-classes obo:DUO_0000017c

method developmentc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000031
Super-classes obo:OBI_0000066c

population researchc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000032
Description

Should be paired with the an ontology term representing this population (e.g., xxx).

Super-classes obo:OBI_0000066c

ancestry researchc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000033
Super-classes obo:OBI_0000066c

age category researchc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000034
Description

Should be paired with the an ontology term representing this population (e.g., xxx).

Super-classes obo:OBI_0000066c

gender category researchc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000035
Description

Should be paired with the an ontology term representing this population (e.g., xxx).

Super-classes obo:OBI_0000066c

research controlc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000036
Super-classes obo:OBI_0000066c

biomedical researchc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000037
Super-classes obo:OBI_0000066c
Sub-classes obo:DUO_0000038c
obo:DUO_0000039c
obo:DUO_0000040c

genetic researchc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000038
Super-classes obo:DUO_0000037c

drug development researchc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000039
Super-classes obo:DUO_0000037c

disease category researchc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000040
Super-classes obo:DUO_0000037c

general research usec # Classes

URI http://purl.obolibrary.org/obo/DUO_0000042
Description

This includes but is not limited to: health/medical/biomedical purposes, fundamental biology research, the study of population origins or ancestry, statistical methods and algorithms development, and social-sciences research.

Super-classes obo:DUO_0000001c
Sub-classes obo:DUO_0000006c

clinical care usec # Classes

URI http://purl.obolibrary.org/obo/DUO_0000043
Description

Clinical Care is defined as Health care or services provided at home, in a healthcare facility or hospital. Data may be used for clinical decision making.

Super-classes obo:DUO_0000017c

not for profit organisation use onlyc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000045
Super-classes obo:DUO_0000018c

non-commercial use onlyc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000046
Description

This indicates that data can be used by commercial organisations for research purposes, but not commercial purposes.

Super-classes obo:DUO_0000018c

geographic locationc # Classes

URI http://purl.obolibrary.org/obo/GAZ_00000448
Super-classes obo:BFO_0000029c

IAO_0000027c # Classes

URI http://purl.obolibrary.org/obo/IAO_0000027
Super-classes obo:IAO_0000030c
Sub-classes obo:DUO_0000017c
obo:IAO_0000100c
obo:DUO_0000001c
obo:IAO_0000140c
obo:IAO_0000109c
obo:IAO_0000400c
obo:IAO_0000102c

IAO_0000030c # Classes

URI http://purl.obolibrary.org/obo/IAO_0000030
Super-classes obo:BFO_0000031c
Sub-classes obo:IAO_0000429c
obo:IAO_0000308c
obo:IAO_0000310c
obo:IAO_0000006c
obo:IAO_0000027c
obo:IAO_0000009c
obo:IAO_0000314c
obo:topic_0003c
obo:IAO_0000300c
obo:IAO_0000028c
obo:IAO_0000033c
obo:IAO_0020000c

disease or disorderc # Classes

URI http://purl.obolibrary.org/obo/MONDO_0000001
Super-classes obo:BFO_0000016c

OBI_0000066c # Classes

URI http://purl.obolibrary.org/obo/OBI_0000066
Super-classes obo:OBI_0000011c
Sub-classes obo:DUO_0000031c
obo:DUO_0000036c
obo:DUO_0000034c
obo:DUO_0000032c
obo:DUO_0000037c
obo:DUO_0000035c
obo:DUO_0000033c

Topicc # Classes

URI http://purl.obolibrary.org/obo/topic_0003
Super-classes obo:IAO_0000030c

Object Properties

is restricted toop # OPs

URI http://purl.obolibrary.org/obo/DUO_0000010

Annotation Properties

DUO_preferred_labelap # APs

URI http://purl.obolibrary.org/obo/DUO_0000041

hasDbXrefap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasDbXref

hasExactSynonymap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasExactSynonym

idap # APs

URI http://www.geneontology.org/formats/oboInOwl#id

shorthandap # APs

URI http://www.geneontology.org/formats/oboInOwl#shorthand

exactMatchap # APs

URI http://www.w3.org/2004/02/skos/core#exactMatch

Namespaces

default (:)
http://purl.obolibrary.org/obo/duo.owl
dc
http://purl.org/dc/elements/1.1/
foaf
http://xmlns.com/foaf/0.1/
obo
http://purl.obolibrary.org/obo/
oboInOwl
http://www.geneontology.org/formats/oboInOwl#
owl
http://www.w3.org/2002/07/owl#
protege
http://protege.stanford.edu/plugins/owl/protege#
prov
http://www.w3.org/ns/prov#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
sdo
https://schema.org/
skos
http://www.w3.org/2004/02/skos/core#
terms
http://purl.org/dc/terms/
xsd
http://www.w3.org/2001/XMLSchema#

Legend

cClasses
opObject Properties
fpFunctional Properties
dpData Properties
dpAnnotation Properties
pProperties
niNamed Individuals