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Genomics Cohorts Knowledge Ontology

Metadata

URI
http://purl.obolibrary.org/obo/gecko.owl
Version URI
http://purl.obolibrary.org/obo/gecko/releases/2021-01-18/gecko.owl
License
https://creativecommons.org/licenses/by/4.0/
Ontology RDF
RDF (turtle)

Description

The GECKO is maintained by the CINECA project, https://www.cineca-project.eu, and standardises attributes commonly used for genomics cohort description as well as individual-level data items. A series of tools is being developed to enable automated generation of harmonised data files based on a JSON schema mapping file. For more information please contact info@cineca-project.eu

Table of Contents

  1. Classes
  2. Object Properties
  3. Annotation Properties
  4. Namespaces
  5. Legend

Overview

Pictures say 1,000 words
Figure 1: Ontology overview

Classes ↑

processc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000015
Sub-classes obo:OBI_0000011c
obo:GO_0008150c
obo:UBERON_0000105c

dispositionc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000016
Super-classes obo:BFO_0000017c
Sub-classes obo:MONDO_0000001c
obo:MF_0000041c

realizable entityc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000017
Sub-classes obo:BFO_0000016c

qualityc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000019
Sub-classes obo:PATO_0001995c
obo:GECKO_0000009c
obo:PATO_0000011c
obo:OGMS_0000020c

sitec # Classes

URI http://purl.obolibrary.org/obo/BFO_0000029
Super-classes obo:BFO_0000141c
Sub-classes obo:GECKO_0000063c
obo:GECKO_0000064c

material entityc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000040
Sub-classes obo:PCO_0000000c
obo:UBERON_0000463c
obo:EUPATH_0010032c

immaterial entityc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000141
Sub-classes obo:GECKO_0000131c
obo:BFO_0000029c

clinical measurement data itemc # Classes

URI http://purl.obolibrary.org/obo/CMO_0000000
Super-classes obo:IAO_0000109c
Sub-classes obo:CMO_0000021c
obo:CMO_0000001c

cardiovascular measurement data itemc # Classes

URI http://purl.obolibrary.org/obo/CMO_0000001
Super-classes obo:CMO_0000000c
Sub-classes obo:CMO_0000003c
obo:CMO_0000294c

blood pressure measurement data itemc # Classes

URI http://purl.obolibrary.org/obo/CMO_0000003
Super-classes obo:CMO_0000001c

body weight data itemc # Classes

URI http://purl.obolibrary.org/obo/CMO_0000012
Super-classes obo:CMO_0000021c

body morphological measurement data itemc # Classes

URI http://purl.obolibrary.org/obo/CMO_0000021
Super-classes obo:CMO_0000000c
Sub-classes obo:CMO_0000106c
obo:CMO_0000012c

body height data itemc # Classes

URI http://purl.obolibrary.org/obo/CMO_0000106
Super-classes obo:CMO_0000021c

pulse data itemc # Classes

URI http://purl.obolibrary.org/obo/CMO_0000294
Super-classes obo:CMO_0000001c

cause of participant deathc # Classes

URI http://purl.obolibrary.org/obo/EUPATH_0000147
Super-classes obo:IAO_0000030c

aggregated clinical visit informationc # Classes

URI http://purl.obolibrary.org/obo/EUPATH_0000305
Super-classes obo:IAO_0000030c

hospitalization informationc # Classes

URI http://purl.obolibrary.org/obo/EUPATH_0000308
Super-classes obo:IAO_0000030c

occupationc # Classes

URI http://purl.obolibrary.org/obo/EUPATH_0000359
Super-classes obo:IAO_0000030c

marital statusc # Classes

URI http://purl.obolibrary.org/obo/EUPATH_0000374
Super-classes obo:IAO_0000030c

healthcare informationc # Classes

URI http://purl.obolibrary.org/obo/EUPATH_0000451
Super-classes obo:IAO_0000030c

environment associated with human dwellingc # Classes

URI http://purl.obolibrary.org/obo/EUPATH_0010032
Super-classes obo:BFO_0000040c

timelinec # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000003
Super-classes obo:IAO_0000033c

population data itemc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000005
Super-classes obo:IAO_0000027c
Sub-classes obo:GECKO_0000006c

population locationc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000006
Super-classes obo:GECKO_0000005c
Restrictions obo:IAO_0000136op some obo:BFO_0000029c

population sizec # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000008
Super-classes obo:GECKO_0000106c
Restrictions obo:IAO_0000136op some obo:PCO_0000000c

population qualityc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000009
Super-classes obo:BFO_0000019c
Sub-classes obo:GECKO_0000011c
obo:GECKO_0000010c
obo:GECKO_0000012c

population sex or sexesc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000010
Super-classes obo:GECKO_0000009c

population gender or gendersc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000011
Super-classes obo:GECKO_0000009c

population age rangec # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000012
Super-classes obo:GECKO_0000009c

data collectionc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000013
Super-classes obo:OBI_0000011c

blood collected from fasting subjectc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000019
Super-classes obo:UBERON_0000178c

biosample storagec # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000026
Super-classes obo:OBI_0302893c

genomic assayc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000032
Description

Merged GECKO 'data type' into 'genomics'.
Super-classes obo:OBI_0000070c
Sub-classes obo:OBI_0002020c
obo:OBI_0000537c
obo:OBI_0000435c
obo:GECKO_0000040c
obo:OBI_0001271c
obo:OBI_0002117c
obo:OBI_0002118c
obo:OBI_0002623c
obo:GECKO_0000042c

microbiome sequencing assayc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000040
Description

Potential new OBI request
Super-classes obo:GECKO_0000032c

eQTL analysisc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000042
Description

Potential new OBI request
Super-classes obo:GECKO_0000032c

biosample sizec # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000044
Super-classes obo:STATO_0000047c

biosample processingc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000047
Super-classes obo:OBI_0000094c

unique identifierc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000055
Super-classes obo:IAO_0020000c

genderc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000060
Super-classes obo:PATO_0001995c

ethnicityc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000061
Super-classes obo:PATO_0001995c

birthplace locationc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000063
Super-classes obo:BFO_0000029c

residence locationc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000064
Super-classes obo:BFO_0000029c

education levelc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000065
Super-classes obo:PATO_0001995c

family and household structurec # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000066
Super-classes obo:IAO_0000030c

lifestyle historyc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000067
Super-classes obo:OGMS_0000015c
Sub-classes obo:GECKO_0000069c
obo:GECKO_0000122c
obo:GECKO_0000104c
obo:GECKO_0000072c
obo:GECKO_0000103c
obo:GECKO_0000068c
obo:GECKO_0000071c

tobacco use historyc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000068
Super-classes obo:GECKO_0000067c

alcohol use historyc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000069
Super-classes obo:GECKO_0000067c

sleep historyc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000071
Super-classes obo:GECKO_0000067c

nutritional historyc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000072
Super-classes obo:GECKO_0000067c

physician contact textual entityc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000073
Super-classes obo:IAO_0000300c

non-pharmacological treatment historyc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000091
Super-classes obo:GECKO_0000115c
Sub-classes obo:GECKO_0000124c
obo:GECKO_0000123c
obo:GECKO_0000092c
obo:GECKO_0000125c
obo:GECKO_0000133c

surgical historyc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000092
Super-classes obo:GECKO_0000091c

prescription drug historyc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000093
Super-classes obo:GECKO_0000115c

disease treated by prescription drugc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000094
Super-classes obo:IAO_0000030c
Restrictions obo:BFO_0000050op some obo:GECKO_0000093c

response to medicationc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000096
Super-classes obo:GO_0008150c

summary statistic for federated datac # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000102
Super-classes obo:STATO_0000039c

recreational drug historyc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000103
Super-classes obo:GECKO_0000067c

physical activity historyc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000104
Super-classes obo:GECKO_0000067c

sample sizec # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000106
Super-classes obo:STATO_0000047c
Sub-classes obo:GECKO_0000008c

biosample availability textual entityc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000113
Super-classes obo:IAO_0000612c
Restrictions obo:IAO_0000136op some obo:UBERON_0000463c

reproductive historyc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000114
Super-classes obo:OGMS_0000015c

treatment historyc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000115
Super-classes obo:OGMS_0000015c
Sub-classes obo:GECKO_0000093c
obo:GECKO_0000091c

psychological measurementc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000118
Description

See also EFO:0009095
Super-classes obo:IAO_0000109c
Sub-classes obo:GECKO_0000126c
obo:GECKO_0000119c
obo:GECKO_0000127c
obo:GECKO_0000120c

cognitive measurementc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000119
Super-classes obo:GECKO_0000118c
Sub-classes obo:GECKO_0000135c
obo:GECKO_0000143c
obo:GECKO_0000134c
obo:GECKO_0000142c
obo:GECKO_0000137c
obo:GECKO_0000141c
obo:GECKO_0000138c
obo:GECKO_0000139c

personality measurementc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000120
Super-classes obo:GECKO_0000118c

emotionc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000121
Super-classes obo:GO_0008150c

oral health historyc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000122
Super-classes obo:GECKO_0000067c

psychological treatment historyc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000123
Super-classes obo:GECKO_0000091c

radiological treatment historyc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000124
Super-classes obo:GECKO_0000091c

physical therapy historyc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000125
Super-classes obo:GECKO_0000091c

perception of health measurementc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000126
Super-classes obo:GECKO_0000118c

quality of life measurementc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000127
Super-classes obo:GECKO_0000118c

information on functional limitationsc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000128
Super-classes obo:IAO_0000030c

information on use of assistive devicesc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000129
Super-classes obo:IAO_0000030c

religious affiliationc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000130
Super-classes obo:IAO_0000030c

human social environmentc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000131
Super-classes obo:BFO_0000141c

family history of diseasec # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000132
Super-classes obo:OGMS_0000015c

diagnostic procedure historyc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000133
Description

Includes procedures such as colonoscopies, ultrasounds, etc., but excludes laboratory tests.
Super-classes obo:GECKO_0000091c

Alzheimer's Disease Assessment Scale scorec # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000134
Super-classes obo:GECKO_0000119c

Mini-Mental State Exam scorec # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000135
Super-classes obo:GECKO_0000119c

native language of individualc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000136
Super-classes obo:IAO_0000030c

Montreal Cognitive Assessment Test scorec # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000137
Super-classes obo:GECKO_0000119c

CERAD Neuropsychological Battery scorec # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000138
Super-classes obo:GECKO_0000119c

Penn Computerized Neurocognitive Battery scorec # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000139
Super-classes obo:GECKO_0000119c

congenital disorderc # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000140
Super-classes obo:MONDO_0000001c

Severe Impairment Battery scorec # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000141
Super-classes obo:GECKO_0000119c

Neuropsychiatric Inventory scorec # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000142
Super-classes obo:GECKO_0000119c

Clinical Dementia Rating Scale scorec # Classes

URI http://purl.obolibrary.org/obo/GECKO_0000143
Super-classes obo:GECKO_0000119c

biological_processc # Classes

URI http://purl.obolibrary.org/obo/GO_0008150
Description

Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this.
Super-classes obo:BFO_0000015c
Sub-classes obo:GECKO_0000096c
obo:GECKO_0000121c

objective specificationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000005
Super-classes obo:IAO_0000033c

data itemc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000027
Super-classes obo:IAO_0000030c
Sub-classes obo:OMRSE_00000501c
obo:GECKO_0000005c
obo:IAO_0000109c

information content entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000030
Sub-classes obo:IAO_0000033c
obo:OGMS_0000015c
obo:GECKO_0000129c
obo:EUPATH_0000308c
obo:EUPATH_0000147c
obo:GECKO_0000066c
obo:GECKO_0000136c
obo:IAO_0020000c
obo:OBI_0002415c
obo:EUPATH_0000451c
obo:EUPATH_0000374c
obo:IAO_0000027c
obo:GECKO_0000128c
obo:IAO_0000300c
obo:GECKO_0000130c
obo:IAO_0000310c
obo:EUPATH_0000305c
obo:GECKO_0000094c
obo:EUPATH_0000359c

directive information entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000033
Super-classes obo:IAO_0000030c
Sub-classes obo:PDRO_0010022c
obo:GECKO_0000003c
obo:IAO_0000104c
obo:IAO_0000005c
obo:OBI_0500027c

plan specificationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000104
Description

2/3/2009 Comment from OBI review.

Action specification not well enough specified. Conditional specification not well enough specified. Question whether all plan specifications have objective specifications.

Request that IAO either clarify these or change definitions not to use them
Super-classes obo:IAO_0000033c
Sub-classes obo:OBI_0500000c

measurement datumc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000109
Super-classes obo:IAO_0000027c
Sub-classes obo:STATO_0000047c
obo:STATO_0000039c
obo:GECKO_0000118c
obo:STATO_0000093c
obo:CMO_0000000c

textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000300
Super-classes obo:IAO_0000030c
Sub-classes obo:IAO_0000619c
obo:IAO_0000612c
obo:GECKO_0000073c

documentc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000310
Super-classes obo:IAO_0000030c
Sub-classes obo:PDRO_0000024c

availability textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000612
Super-classes obo:IAO_0000300c
Sub-classes obo:GECKO_0000113c

consent textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000619
Super-classes obo:IAO_0000300c

identifierc # Classes

URI http://purl.obolibrary.org/obo/IAO_0020000
Super-classes obo:IAO_0000030c
Sub-classes obo:GECKO_0000055c

beliefc # Classes

URI http://purl.obolibrary.org/obo/MF_0000041
Super-classes obo:BFO_0000016c

disease or disorderc # Classes

URI http://purl.obolibrary.org/obo/MONDO_0000001
Super-classes obo:BFO_0000016c
Sub-classes obo:MONDO_0005039c
obo:MONDO_0004995c
obo:MONDO_0005151c
obo:GECKO_0000140c
obo:MONDO_0024458c
obo:MONDO_0002118c
obo:MONDO_0024623c
obo:MONDO_0002051c
obo:MONDO_0004335c
obo:MONDO_0005087c
obo:MONDO_0005046c
obo:MONDO_0004992c
obo:MONDO_0021178c
obo:MONDO_0005550c
obo:MONDO_0005071c
obo:MONDO_0002081c
obo:MONDO_0029000c
obo:MONDO_0005084c
obo:MONDO_0005570c

integumentary system diseasec # Classes

URI http://purl.obolibrary.org/obo/MONDO_0002051
Super-classes obo:MONDO_0000001c

musculoskeletal system diseasec # Classes

URI http://purl.obolibrary.org/obo/MONDO_0002081
Super-classes obo:MONDO_0000001c

urinary system diseasec # Classes

URI http://purl.obolibrary.org/obo/MONDO_0002118
Super-classes obo:MONDO_0000001c

digestive system diseasec # Classes

URI http://purl.obolibrary.org/obo/MONDO_0004335
Super-classes obo:MONDO_0000001c

cancerc # Classes

URI http://purl.obolibrary.org/obo/MONDO_0004992
Super-classes obo:MONDO_0000001c

cardiovascular diseasec # Classes

URI http://purl.obolibrary.org/obo/MONDO_0004995
Super-classes obo:MONDO_0000001c

reproductive system diseasec # Classes

URI http://purl.obolibrary.org/obo/MONDO_0005039
Super-classes obo:MONDO_0000001c

immune system diseasec # Classes

URI http://purl.obolibrary.org/obo/MONDO_0005046
Super-classes obo:MONDO_0000001c

nervous system disorderc # Classes

URI http://purl.obolibrary.org/obo/MONDO_0005071
Super-classes obo:MONDO_0000001c

mental disorderc # Classes

URI http://purl.obolibrary.org/obo/MONDO_0005084
Super-classes obo:MONDO_0000001c

respiratory system diseasec # Classes

URI http://purl.obolibrary.org/obo/MONDO_0005087
Super-classes obo:MONDO_0000001c

endocrine system diseasec # Classes

URI http://purl.obolibrary.org/obo/MONDO_0005151
Super-classes obo:MONDO_0000001c

infectious diseasec # Classes

URI http://purl.obolibrary.org/obo/MONDO_0005550
Description

Replaces 'infection' in disease hierarchy. OBI imported term infection is moved to pathologic process. This class is a container class for infectious diseases, not the process of infection itself.
Super-classes obo:MONDO_0000001c

hematologic diseasec # Classes

URI http://purl.obolibrary.org/obo/MONDO_0005570
Description

placeholder for lymphoid disease
Super-classes obo:MONDO_0000001c

injuryc # Classes

URI http://purl.obolibrary.org/obo/MONDO_0021178
Super-classes obo:MONDO_0000001c

disease of visual systemc # Classes

URI http://purl.obolibrary.org/obo/MONDO_0024458
Super-classes obo:MONDO_0000001c

otorhinolaryngologic diseasec # Classes

URI http://purl.obolibrary.org/obo/MONDO_0024623
Description

Editor note: consider uberon class
Super-classes obo:MONDO_0000001c

poisoningc # Classes

URI http://purl.obolibrary.org/obo/MONDO_0029000
Super-classes obo:MONDO_0000001c

planned processc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000011
Super-classes obo:BFO_0000015c
Sub-classes obo:GECKO_0000013c
obo:OBI_0000094c
obo:OBI_0000070c
obo:OBI_0302893c

assayc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000070
Super-classes obo:OBI_0000011c
Sub-classes obo:GECKO_0000032c
obo:OBI_0001624c
obo:OBI_0000185c

material processingc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000094
Super-classes obo:OBI_0000011c
Sub-classes obo:GECKO_0000047c

imaging assayc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000185
Super-classes obo:OBI_0000070c

genotyping assayc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000435
Super-classes obo:GECKO_0000032c

copy number variation profiling assayc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000537
Super-classes obo:GECKO_0000032c

RNA-seq assayc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001271
Super-classes obo:GECKO_0000032c

organism identification assayc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001624
Super-classes obo:OBI_0000070c

epigenetic modification assayc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002020
Super-classes obo:GECKO_0000032c

whole genome sequencing assayc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002117
Super-classes obo:GECKO_0000032c

exome sequencing assayc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002118
Super-classes obo:GECKO_0000032c

exposure to environmental and workplace carcinogens historyc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002415
Super-classes obo:IAO_0000030c

whole metagenome sequencing assayc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002623
Super-classes obo:GECKO_0000032c

storagec # Classes

URI http://purl.obolibrary.org/obo/OBI_0302893
Super-classes obo:OBI_0000011c
Sub-classes obo:GECKO_0000026c

study designc # Classes

URI http://purl.obolibrary.org/obo/OBI_0500000
Super-classes obo:IAO_0000104c

inclusion criterionc # Classes

URI http://purl.obolibrary.org/obo/OBI_0500027
Super-classes obo:IAO_0000033c

clinical historyc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000015
Super-classes obo:IAO_0000030c
Sub-classes obo:GECKO_0000114c
obo:GECKO_0000132c
obo:GECKO_0000115c
obo:GECKO_0000067c

symptomc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000020
Super-classes obo:BFO_0000019c

income datac # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000501
Super-classes obo:IAO_0000027c

agec # Classes

URI http://purl.obolibrary.org/obo/PATO_0000011
Super-classes obo:BFO_0000019c

biological sexc # Classes

URI http://purl.obolibrary.org/obo/PATO_0000047
Super-classes obo:PATO_0001995c

organismal qualityc # Classes

URI http://purl.obolibrary.org/obo/PATO_0001995
Super-classes obo:BFO_0000019c
Sub-classes obo:GECKO_0000061c
obo:PATO_0000047c
obo:GECKO_0000060c
obo:GECKO_0000065c

collection of organismsc # Classes

URI http://purl.obolibrary.org/obo/PCO_0000000
Description

May be of the same or different species.
Super-classes obo:BFO_0000040c

drug prescriptionc # Classes

URI http://purl.obolibrary.org/obo/PDRO_0000024
Super-classes obo:IAO_0000310c

drug administration specificationc # Classes

URI http://purl.obolibrary.org/obo/PDRO_0010022
Super-classes obo:IAO_0000033c

statisticc # Classes

URI http://purl.obolibrary.org/obo/STATO_0000039
Super-classes obo:IAO_0000109c
Sub-classes obo:GECKO_0000102c

countc # Classes

URI http://purl.obolibrary.org/obo/STATO_0000047
Super-classes obo:IAO_0000109c
Sub-classes obo:GECKO_0000044c
obo:GECKO_0000106c

datec # Classes

URI http://purl.obolibrary.org/obo/STATO_0000093
Super-classes obo:IAO_0000109c

life cycle stagec # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000105
Super-classes obo:BFO_0000015c

bloodc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000178
Super-classes obo:UBERON_0000463c
Sub-classes obo:GECKO_0000019c

organism substancec # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000463
Super-classes obo:BFO_0000040c
Sub-classes obo:UBERON_0001988c
obo:UBERON_0000178c
obo:UBERON_0001836c
obo:UBERON_0001088c

urinec # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001088
Super-classes obo:UBERON_0000463c

salivac # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001836
Super-classes obo:UBERON_0000463c

fecesc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001988
Super-classes obo:UBERON_0000463c

Object Properties ↑

part ofop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000050

is aboutop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000136

inheres inop # OPs

URI http://purl.obolibrary.org/obo/RO_0000052

Annotation Properties ↑

IHCC categoryap # APs

URI http://purl.obolibrary.org/obo/GECKO_9000000

IHCC browser labelap # APs

URI http://purl.obolibrary.org/obo/GECKO_9000001

example of usageap # APs

URI http://purl.obolibrary.org/obo/IAO_0000112

definitionap # APs

URI http://purl.obolibrary.org/obo/IAO_0000115

alternative termap # APs

URI http://purl.obolibrary.org/obo/IAO_0000118

definition sourceap # APs

URI http://purl.obolibrary.org/obo/IAO_0000119

has_alternative_idap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasAlternativeId

has_broad_synonymap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym

has_exact_synonymap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasExactSynonym

has_narrow_synonymap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym

commentap # APs

URI http://www.w3.org/2000/01/rdf-schema#comment

labelap # APs

URI http://www.w3.org/2000/01/rdf-schema#label

see alsoap # APs

URI http://www.w3.org/2000/01/rdf-schema#seeAlso

Namespaces ↑

default (:)
http://purl.obolibrary.org/obo/gecko.owl
dc
http://purl.org/dc/elements/1.1/
obo
http://purl.obolibrary.org/obo/
oboInOwl
http://www.geneontology.org/formats/oboInOwl#
owl
http://www.w3.org/2002/07/owl#
prov
http://www.w3.org/ns/prov#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
sdo
https://schema.org/
skos
http://www.w3.org/2004/02/skos/core#
terms
http://purl.org/dc/terms/
xsd
http://www.w3.org/2001/XMLSchema#

Legend

cClasses
opObject Properties
fpFunctional Properties
dpData Properties
dpAnnotation Properties
pProperties
niNamed Individuals