Genomic Epidemiology Ontology

IRI:
http://purl.obolibrary.org/obo/genepio.owl
Version IRI:
http://purl.obolibrary.org/obo/genepio/releases/2023-06-21/genepio.owl
Date :
21/06/2023
Imported Ontologies :
http://purl.obolibrary.org/obo/bfo/2.0/bfo.owl (visualise it with LODE )
http://purl.obolibrary.org/obo/genepio/imports/chebi_import.owl (visualise it with LODE )
http://purl.obolibrary.org/obo/genepio/imports/deprecation_import.owl (visualise it with LODE )
http://purl.obolibrary.org/obo/genepio/imports/doid_import.owl (visualise it with LODE )
http://purl.obolibrary.org/obo/genepio/imports/envo_import.owl (visualise it with LODE )
http://purl.obolibrary.org/obo/genepio/imports/foodon_import.owl (visualise it with LODE )
http://purl.obolibrary.org/obo/genepio/imports/gaz_insdc_mapping.owl (visualise it with LODE )
http://purl.obolibrary.org/obo/genepio/imports/gazetteer_import.owl (visualise it with LODE )
http://purl.obolibrary.org/obo/genepio/imports/general_import.owl (visualise it with LODE )
http://purl.obolibrary.org/obo/genepio/imports/hardcoded.owl (visualise it with LODE )
http://purl.obolibrary.org/obo/genepio/imports/model_import.owl (visualise it with LODE )
http://purl.obolibrary.org/obo/genepio/imports/ncbitaxon_import.owl (visualise it with LODE )
http://purl.obolibrary.org/obo/genepio/imports/obi_import.owl (visualise it with LODE )
http://purl.obolibrary.org/obo/genepio/imports/ontology-metadata.owl (visualise it with LODE )
http://purl.obolibrary.org/obo/genepio/imports/ro_import.owl (visualise it with LODE )
http://purl.obolibrary.org/obo/genepio/imports/specification_enum_import.owl (visualise it with LODE )
http://purl.obolibrary.org/obo/genepio/imports/specification_field_import.owl (visualise it with LODE )
http://purl.obolibrary.org/obo/genepio/imports/specification_import.owl (visualise it with LODE )
http://purl.obolibrary.org/obo/genepio/imports/specification_mint_import.owl (visualise it with LODE )
http://purl.obolibrary.org/obo/genepio/imports/temporary_mint_import.owl (visualise it with LODE )
http://purl.obolibrary.org/obo/genepio/imports/uberon_import.owl (visualise it with LODE )
Other visualisation :
Ontology source - WebVowl

Table of Content

  1. Classes
  2. Object Properties
  3. Data Properties
  4. Named Individuals
  5. Annotation Properties
  6. General Axioms
  7. Namespace Declarations

Classes

1 - standard draftc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001765

has super-classes
assembly statusc

16S rRNA sequencingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000053

has super-classes
o b i 0001177

2 - high quality draftc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001766

has super-classes
assembly statusc

2D boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001996

has super-classes
g e n e p i o 0001884
has sub-classes
circlec

2D entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001934

has super-classes
g e n e p i o 0001884
has sub-classes
circlec

3 - improved high quality draftc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001767

has super-classes
assembly statusc

4 - annotation-directed improvementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001768

has super-classes
assembly statusc

454 Genome Sequencerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001937

has super-classes
sequencing instrument modelc
o b i 0400103
has sub-classes
454 Genome Sequencer FLX Titaniumc, 454 Genome Sequencer Juniorc

454 Genome Sequencer FLX Titaniumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001936

has super-classes
454 Genome Sequencerc

454 Genome Sequencer Juniorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001938

has super-classes
454 Genome Sequencerc

5 - non-contiguous finishedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001769

has super-classes
assembly statusc

5-methylcytidine antibody methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001941

has super-classes
library selectionc

6 - finishedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001770

has super-classes
assembly statusc

a p o l l o s v 00000016c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000016

has super-classes
e f o 0000433c

a p o l l o s v 00000017c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000017

has super-classes
e f o 0000433c

a p o l l o s v 00000019c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000019

has super-classes
s t a t o 0000047

a p o l l o s v 00000020c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000020

has super-classes
s t a t o 0000047

a p o l l o s v 00000021c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000021

has super-classes
s t a t o 0000047

a p o l l o s v 00000022c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000022

has super-classes
s t a t o 0000047

a p o l l o s v 00000031c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000031

has super-classes
i a o 0000027

a p o l l o s v 00000033c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000033

has super-classes
o b i 0000011

a p o l l o s v 00000098c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000098

has super-classes
s t a t o 0000047

a p o l l o s v 00000099c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000099

has super-classes
s t a t o 0000047

a p o l l o s v 00000153c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000153

has super-classes
has componentop exactly 1
is aboutop some earth area boundary censusc
is aboutop some o b i 0000181
has componentop exactly 1

a p o l l o s v 00000173c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000173

has super-classes
b f o 0000051op some a p o l l o s v 00000240c
has sub-classes
earth area boundary censusc

a p o l l o s v 00000211c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000211

has super-classes
i a o 0000027

a p o l l o s v 00000236c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000236

has super-classes
i d o 0000531c

a p o l l o s v 00000240c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000240

has super-classes
o b i 0001508

a p o l l o s v 00000258c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000258

has super-classes
e f o 0000433c

a p o l l o s v 00000267c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000267

has super-classes
e f o 0000433c

a p o l l o s v 00000280c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000280

has super-classes
e f o 0000433c

a p o l l o s v 00000281c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000281

has super-classes
s t a t o 0000047

a p o l l o s v 00000291c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000291

has super-classes
e f o 0000433c

a p o l l o s v 00000511c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000511

has super-classes
exposure by human contactc

a r o 3004299c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ARO_3004299

has super-classes
b f o 0000019
is aboutop some i d o 0000581c
has sub-classes
a r o 3004305c, antibiotic resistance not definedc

a r o 3004305c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ARO_3004305

has super-classes
a r o 3004299c

a r o 3004366c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ARO_3004366

On January 1, 2005 the National Committee on Clinical Laboratory Standards (NCCLS) changed its name to CLSI

a r o 3004371c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ARO_3004371

has super-classes
i a o 0000109

a r o 3004372c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ARO_3004372

has super-classes
i a o 0000109

a r o 3004388c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ARO_3004388

has super-classes
o b i 0000070

a r o 3004391c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ARO_3004391

has super-classes
n c i t c85540c

a r o 3004397c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ARO_3004397

has super-classes
n c i t c85540c
has sub-classes
n c i t c85697c

A.I.D.S statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001087

has super-classes
behavioural risk factorc

AccuProbe culture identification assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000060

has super-classes
o b i 0000070
has outputop some AccuProbe test resultc

AccuProbe Listeria monocytogenes culture identification reagent kitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000061

has super-classes
o b i 0001879

AccuProbe test resultc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000062

has super-classes
i a o 0000109
output of some AccuProbe culture identification assayc

acquaintancec back to ToC or Class ToC

IRI: http://www.w3.org/2006/vcard/ns#Acquaintance

has super-classes
exposure event personc

adapter sequencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000083

has super-classes
laboratory sequencing datumc

addressc back to ToC or Class ToC

IRI: http://www.w3.org/2006/vcard/ns#Address

has super-classes
i a o 0000300
has sub-classes
n c i t c25690c

admitted to hospitalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002020

has super-classes
host hospital service statusc

agency provided consentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002033

has super-classes
consent datumc

agricultural fairc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001053

has super-classes
p c o 0000033c

agricultural project relevancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001573

has super-classes
project relevancec

Agriculture and Agri-Food Canadac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001643

has super-classes
o b i 0001893c

AHA HIPPA standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001837

has super-classes
public health data standardc

airline travelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001063

has super-classes
travel modec

American HIPPA Protected Health Information (PHI) guidelinesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000017

has super-classes
public health data standardc

amplicon strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001974

has super-classes
library strategyc

analysis objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001594

has super-classes
o b i 0001892c

analytic datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001192

Judgements here are marked down after an agent's (doctor/veterenary) analysis of symptoms.
has super-classes
i a o 0000027
has sub-classes
diagnosisc, illness causalityc, signs and symptomsc

ancestral groupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/hancestro_0004

has super-classes
organism datumc

animal body productc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001636

has super-classes
subject body productc
r o 0003001 some o b i 0100026

animal exposure event by materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001271

has super-classes
investigative subjectc
has sub-classes
pet food (raw)c, pet treatc

animal exposure processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001270

has super-classes
b f o 0000015

animal related exposure eventc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001050

has super-classes
infectious disease exposure eventc

animal rinsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002750

Date :
28T20:11:45Z/06/2019
is equivalent to
animal body productc and rinsec
has super-classes
rinsec
has sub-classes
fluid from meat rinsec

animal rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001175

is equivalent to
organism rolec and (inheres inop some n c b i taxon 33213)
has super-classes
organism rolec
has sub-classes
person rolec

animal specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001247

has super-classes
specimen source material categoryc
has sub-classes
avian - domesticatedc, avian - wildc, d000830c, d000835c, d057805c, d058751c, n c i t c71164c

ANSI INCITS 38c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001832

has super-classes
n c i t c103180c

antibiotic resistance not definedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002040

has super-classes
a r o 3004299c

antibiotic treatmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCRO_0000230

has super-classes
infectious disease treatmentc

antibiotics requiredc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001665

has super-classes
infection detail datumc

antigenic formulac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001639

has super-classes
test specificationc
is aboutop some c h e b i 59132
is aboutop some n c i t c53471c
has sub-classes
Salmonella antigenic formulac

antimicrobial resistance test drugc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001187

is equivalent to
c h e b i 36357 and (r o 0000087 some c h e b i 33281)
has super-classes
c h e b i 36357
has sub-classes
c h e b i 124991c, c h e b i 17154c, c h e b i 17334c, c h e b i 17939c, c h e b i 209807c, c h e b i 23066c, c h e b i 24531c, c h e b i 26144c, c h e b i 26513c, c h e b i 2790c, c h e b i 27933c, c h e b i 281056c, c h e b i 28368c, c h e b i 29007c, c h e b i 29673c, c h e b i 35991c, c h e b i 3716c, c h e b i 3907c, c h e b i 39447c, c h e b i 46633c, c h e b i 46770c, c h e b i 4885c, c h e b i 5195c, c h e b i 599928c, c h e b i 60584c, c h e b i 63607c, c h e b i 63611c, c h e b i 63845c, c h e b i 68452c, c h e b i 7025c, c h e b i 71415c, c h e b i 75246c, c h e b i 7731c, c h e b i 86324c, c h e b i 87211c, c h e b i 87228c, c h e b i 87230c, c h e b i 9215c, c h e b i 9321c, c h e b i 9421c, c h e b i 9587c, c h e b i 9997c, last resort antibioticc

antimicrobial resistance testing method device or reagentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002047

has super-classes
o b i 0000968
has sub-classes
Etest (device)c, GM-NEGc

antimicrobial resistance testing reference standard versionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002111

has super-classes
i a o 0000300

antimicrobial resistant plasmid typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002048

has super-classes
phenotypic antimicrobial drug susceptibility test datumc

Apalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001714

has super-classes
secondary enzyme (LMACI)c

array project methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001603

has super-classes
o b i 0001896

Asclc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001711

has super-classes
primary enzyme (LMAAI)c

ASFISc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001822

has super-classes
source databasec

assembly and annotation project objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001738

has super-classes
sequencing assembly datumc
has sub-classes
isolate (pathogen) identificationc, metagenomic species identificationc, variant calling / pathogen identification and clusteringc

assembly genome sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001561

As noted in Quast documentation: " The total assembly size may increase (and in some cases exceeds the genome size) due to contaminants (see Chitsaz et al. (2011)), misassembled contigs, repeats, and hubs that contribute to multiple contigs. "
has super-classes
assembly quality control datumc
i a o 0000039op some u o 0000244

assembly genome size specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002146

has super-classes
decimal value specificationc
o b i 0001927 some assembly genome sizec
i a o 0000039op exactly 1

assembly methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000090

is equivalent to
de-novo assemblyc or mapping (reference based)c
has super-classes
sequencing assembly datumc
has sub-classes
de-novo assemblyc, mapping (reference based)c

assembly name (identifier)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000094

has super-classes
sequencing assembly datumc
is aboutop some s o 0000353c

assembly objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001595

has super-classes
o b i 0001892c

assembly projectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000157

has super-classes
project data typec

assembly quality control datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001568

has super-classes
sequencing assembly datumc
is aboutop some s o 0000353c
has sub-classes
assembly genome sizec, assembly statusc, breadth of coveragec, contig countc, contig lengthc, genome size delta ratioc, genome size delta ratio QC thresholdc, mean contig lengthc, number of expected base pairs per genomec, number of reads passing filterc, phred quality scorec, read coveragec

assembly statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000091

has super-classes
assembly quality control datumc
has sub-classes
1 - standard draftc, 2 - high quality draftc, 3 - improved high quality draftc, 4 - annotation-directed improvementc, 5 - non-contiguous finishedc, 6 - finishedc

avian - domesticatedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001734

has super-classes
animal specimenc

avian - wildc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001733

has super-classes
animal specimenc

awaiting ontology reviewc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001432

has super-classes
thingc
has sub-classes
e n v o 03501109c, e n v o 03501121c, e n v o 03501127c, e n v o 03501130c, e n v o 03501133c, e n v o 03501135c, e n v o 03501136c, e n v o 03501145c, e n v o 03501152c, e n v o 03501180c, e n v o 03501186c, e n v o 03501194c, e n v o 03501196c, e n v o 03501198c, e n v o 03501204c, e n v o 03501208c, e n v o 03501209c, e n v o 03501210c, e n v o 03501211c, e n v o 03501212c, e n v o 03501213c, e n v o 03501214c, e n v o 03501215c, e n v o 03501216c, e n v o 03501217c, e n v o 03501218c, e n v o 03501219c, e n v o 03501220c, e n v o 03501256c, epidemiology investigation data itemc, host illness associated withc, o b i 0002825c, o b i 0002826c, o b i 0002827c, o b i 0002831c, o b i 0002858c, o b i 0002859c, o b i 0002860c, o b i 0002861c, o b i 0002862c, o b i 0002866c, outbreak animal exposure event locationc, outcome of pregnancy associated with illnessc

bacteria densityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000043

has super-classes
environmental datumc

Bacterial bacteriophage typingc back to ToC or Class ToC

IRI: http://snomed.info/sct/22642004

has super-classes
o b i 0000070

behavioural risk factorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001074

has super-classes
i a o 0000027
has sub-classes
A.I.D.S statusc, HIV risk statusc, HIV statusc, drug abuse statusc, drug use statusc, homeless statusc, incarceration statusc, injection drug use statusc, methadone use statusc, recreational drug use statusc, smoking statusc, substantial alcohol use/abuse statusc

BGI Genomics platformc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0004324

Date :
23T11:41:23Z/09/2022
Contributors :
https://orcid.org/0000-0001-5275-8866
has super-classes
sequencing platform (brand)c

bioinformatics analysis servicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002223

Date :
03T02:49:24Z/05/2019
has super-classes
specimen related servicec

bioinformatics pipeline namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000151

has super-classes
laboratory sequencing datumc

bioinformatics pipeline protocolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000153

has super-classes
laboratory sequencing datumc

bioinformatics pipeline versionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000152

has super-classes
laboratory sequencing datumc

Bisulfite-Seq strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001975

has super-classes
library strategyc

Blnlc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001713

has super-classes
secondary enzyme (LMACI)c

boat / cruise travelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001059

has super-classes
travel modec

boolean value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002158

has super-classes
o b i 0001933
is aboutop some s t a t o 0000090c
o b i 0002135dp exactly 1

bottled waterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001047

has super-classes
treated water - ambient temperaturec

breadth of coveragec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002137

Contributors :
https://orcid.org/0000-0002-1107-9135
https://orcid.org/0000-0002-9578-0788
has super-classes
assembly quality control datumc

built environment specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001248

has super-classes
environmental specimenc

bus travelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001061

has super-classes
travel modec

business activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001067

has super-classes
travel reasonc

c h e b i 124991c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_124991

has super-classes
antimicrobial resistance test drugc

c h e b i 17154c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_17154

has super-classes
antimicrobial resistance test drugc

c h e b i 17334c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_17334

has super-classes
antimicrobial resistance test drugc

c h e b i 17939c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_17939

has super-classes
antimicrobial resistance test drugc

c h e b i 209807c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_209807

has super-classes
antimicrobial resistance test drugc

c h e b i 23066c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_23066

has super-classes
antimicrobial resistance test drugc

c h e b i 24531c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_24531

has super-classes
antimicrobial resistance test drugc

c h e b i 26144c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_26144

has super-classes
antimicrobial resistance test drugc

c h e b i 26513c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_26513

has super-classes
antimicrobial resistance test drugc

c h e b i 2790c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_2790

has super-classes
antimicrobial resistance test drugc

c h e b i 27933c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_27933

has super-classes
antimicrobial resistance test drugc

c h e b i 281056c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_281056

has super-classes
antimicrobial resistance test drugc

c h e b i 28368c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_28368

has super-classes
antimicrobial resistance test drugc

c h e b i 29007c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_29007

has super-classes
antimicrobial resistance test drugc

c h e b i 29673c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_29673

has super-classes
antimicrobial resistance test drugc

c h e b i 35991c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_35991

has super-classes
antimicrobial resistance test drugc

c h e b i 3716c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_3716

has super-classes
antimicrobial resistance test drugc

c h e b i 3907c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_3907

has super-classes
antimicrobial resistance test drugc

c h e b i 39447c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_39447

has super-classes
antimicrobial resistance test drugc

c h e b i 46633c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_46633

has super-classes
antimicrobial resistance test drugc

c h e b i 46770c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_46770

has super-classes
antimicrobial resistance test drugc

c h e b i 4885c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_4885

has super-classes
second line or reserve tuberculosis drugc
antimicrobial resistance test drugc

c h e b i 5195c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_5195

has super-classes
antimicrobial resistance test drugc

c h e b i 599928c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_599928

has super-classes
antimicrobial resistance test drugc

c h e b i 60584c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_60584

has super-classes
antimicrobial resistance test drugc

c h e b i 63607c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_63607

has super-classes
second line or reserve tuberculosis drugc
antimicrobial resistance test drugc

c h e b i 63611c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_63611

has super-classes
second line or reserve tuberculosis drugc
antimicrobial resistance test drugc

c h e b i 63845c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_63845

has super-classes
antimicrobial resistance test drugc

c h e b i 68452c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_68452

has super-classes
antimicrobial resistance test drugc

c h e b i 7025c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_7025

has super-classes
antimicrobial resistance test drugc

c h e b i 71415c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_71415

has super-classes
antimicrobial resistance test drugc

c h e b i 75246c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_75246

has super-classes
antimicrobial resistance test drugc

c h e b i 7731c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_7731

has super-classes
second line or reserve tuberculosis drugc
antimicrobial resistance test drugc

c h e b i 86324c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_86324

has super-classes
antimicrobial resistance test drugc

c h e b i 87211c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_87211

has super-classes
antimicrobial resistance test drugc

c h e b i 87228c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_87228

has super-classes
antimicrobial resistance test drugc

c h e b i 87230c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_87230

has super-classes
antimicrobial resistance test drugc

c h e b i 9215c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_9215

has super-classes
antimicrobial resistance test drugc

c h e b i 9321c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_9321

has super-classes
antimicrobial resistance test drugc

c h e b i 9421c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_9421

has super-classes
antimicrobial resistance test drugc

c h e b i 9587c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_9587

has super-classes
antimicrobial resistance test drugc

c h e b i 9997c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_9997

has super-classes
antimicrobial resistance test drugc

c h m o 0002743c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHMO_0002743

"This observable is important where process of capturing sample can affect dna extraction."
has sub-classes
human clinical specimenc, unknown sourcec

c v d o 0000597c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CVDO_0000597

has super-classes
health status history datumc

CAGE methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001942

has super-classes
library selectionc

campingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001028

has super-classes
human general activityc

Canadian Integrated Public Health Information System (iPHIS) Standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001010

has super-classes
public health data standardc

canoeing / kayaking / boatingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001026

has super-classes
human water activityc

car travelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001062

has super-classes
travel modec

case identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001659

has super-classes
i a o 0000577
has sub-classes
g e n e p i o 0000102c

cDNA methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001962

has super-classes
library selectionc

centre pointc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002035

has super-classes
s i o 000507c

CF-H methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001943

has super-classes
library selectionc

CF-M methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001944

has super-classes
library selectionc

CF-S methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001945

has super-classes
library selectionc

CF-T methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001946

has super-classes
library selectionc

CGF typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000052

has super-classes
test specificationc

ChIP methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001947

has super-classes
library selectionc

ChIP-Seq strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001979

has super-classes
library strategyc

circlec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001922

has super-classes
2D entityc
2D boundaryc
s i o 000608
has componentop exactly 1 centre pointc
has componentop exactly 1 p a t o 0002390

clinical or host-associated pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001569

has super-classes
specimen categoryc
member ofop some GSCID-BRC Project and Sample Application Standardc
member ofop some NCBI BioSample Pathogen.cl standardc

clinical trial sampling strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0100549

Date :
23T11:08:21Z/09/2022
Contributors :
https://orcid.org/0000-0001-5275-8866
has super-classes
g e n e p i o 0100219

clone end data capturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001752

has super-classes
o b i 0001899

clone end strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001976

has super-classes
library strategyc

clone ends projectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000158

has super-classes
project data typec

clone strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001977

has super-classes
library strategyc

close interpersonal relationship exposurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001551

has super-classes
exposure by human contactc

cluster identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000136

has super-classes
test specificationc

collection depth datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000029

has super-classes
environmental datumc

collection identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001804

has super-classes
i a o 0000577
has sub-classes
NCBI BioSample collection codec

colony forming unit per 100 milliliterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001997

has super-classes
u o 0000212c

comfortable health statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001847

has super-classes
ex o 0000038c
subject health status (UK NHS)c
afterop some satisfactory health statusc
r o 0002083op some progressing well health statusc

commensal rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001608

has super-classes
isolate organism rolec

common vehicle transmissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/EPO_0000016

has super-classes
indirect transmissionc
has sub-classes
inhalationc

Complete Genomics platformc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001924

Damion Dooley's note: This platform is in-house and not a product per se. Complete Genomics states: "Complete Genomics’ sequencing platform employs high-density DNA nanoarrays that are populated with DNA nanoballs (DNBs™). Base identification is performed using an unchained ligation-based read technology known as combinatorial probe-anchor ligation (cPAL™). The sequencing instrumentation is custom-developed to support this process. Details are described in our Science publication (Drmanac et al., 2010)."
has super-classes
sequencing platform (brand)c

conductivity measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000034

has super-classes
environmental datumc

congenitalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/TRANS_0000006

has super-classes
direct transmissionc

consent datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002032

has super-classes
data protection itemc
has sub-classes
agency provided consentc, subject provided consentc

contactc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/TRANS_0000007

has super-classes
direct transmissionc

contact specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001755

has super-classes
data specificationc
has sub-classes
contact specification - addressc, contact specification - personc, contact specification - phonec, contact specification - professional rolec, contact specification - specimen related organizationc, epidemiology contact network modelc

contact specification - addressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001679

has super-classes
contact specificationc

contact specification - epi network contactc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000142

has super-classes
contact specification - personc

contact specification - lab test requesterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000138

has super-classes
contact specification - personc

contact specification - parent/guardianc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001676

has super-classes
contact specification - personc
is aboutop some parent-guardian rolec

contact specification - patientc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001677

has super-classes
contact specification - personc
is aboutop some o b i 0000093c
has componentop some contact specification - addressc

contact specification - personc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001606

has super-classes
contact specificationc
has sub-classes
contact specification - epi network contactc, contact specification - lab test requesterc, contact specification - parent/guardianc, contact specification - patientc, contact specification - physicianc

contact specification - phonec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001756

has super-classes
contact specificationc

contact specification - physicianc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001674

has super-classes
contact specification - personc
is aboutop some n c i t c25741c
has componentop some contact specification - addressc

contact specification - professional rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002104

has super-classes
contact specificationc

contact specification - specimen related organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002082

has super-classes
contact specificationc

container identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001558

has super-classes
i a o 0000577

container recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001426

has super-classes
draft GenEpiO component recordc

contig countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000093

has super-classes
assembly quality control datumc
s t a t o 0000047
is aboutop some s o 0001462c
has sub-classes
contig L50c, contig L99c, contig LG50c, contig LG99c, contig count QC thresholdc

contig count QC thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001571

has super-classes
contig countc

contig L50c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001633

has super-classes
contig countc

contig L99c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001774

has super-classes
contig countc

contig lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001632

has super-classes
assembly quality control datumc
is aboutop some s o 0000149
has sub-classes
contig N50 length QC thresholdc, contig N99c, contig N99 length QC thresholdc, contig NG50c, contig NG99c, contig length QC thresholdc, o b i 0001941c

contig length QC thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001630

QUAST specifies which of its report stats are affected by the "--min-contig" minimum contig length parameter.
has super-classes
contig lengthc

contig LG50c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001773

has super-classes
contig countc

contig LG99c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001634

has super-classes
contig countc

contig N50 length QC thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001565

has super-classes
contig lengthc

contig N99c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001570

has super-classes
contig lengthc

contig N99 length QC thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001566

has super-classes
contig lengthc

contig NG50c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001631

"Note that N50 is calculated in the context of the assembly size rather than the genome size. Therefore, comparisons of N50 values derived from assemblies of significantly different lengths are usually not informative, even if for the same genome. To address this, the authors of the Assemblathon competition derived a new measure called NG50. The NG50 statistic is the same as N50 except that it is 50% of the known or estimated genome size that must be of the NG50 length or longer. This allows for meaningful comparisons between different assemblies. In the typical case that the assembly size is not more than the genome size, the NG50 statistic will not be more than the N50 statistic." - wikipedia
has super-classes
contig lengthc

contig NG99c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001771

has super-classes
contig lengthc

core genome fingerprinting assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000051

has super-classes
o b i 0000070

country of birthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001094

has super-classes
organism datumc
b f o 0000067op some n c i t c25155c
is aboutop some n c i t c25464c

critical but stable health statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001846

Damion Dooley's note: This is a contentious term. AHA calls for it never to be used, since the common phrase "critical but stable" is misleading by the very nature of "critical". The NHS however has it as one of its central terms. The use of "stable" also points to a health trend, rather than a state. A separate "health status trend datum" has been set up to capture this.
has super-classes
ex o 0000038c
subject health status (UK NHS)c
afterop some critical health statusc
r o 0002083op some serious health statusc

critical health statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002228

Date :
19T22:17:43Z/11/2019
has super-classes
ex o 0000038c
subject health status (UK NHS)c
subject health status (AHA)c
r o 0002083op some critical but stable health statusc

CTS strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001978

has super-classes
library strategyc

cubic metre per secondc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001760

has super-classes
u o 0000000

culture frozen datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000022

has super-classes
isolate history itemc

culture identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001723

has super-classes
i a o 0000577
has sub-classes
NCBI BioSample culture identifierc, NCBI culture collectionc

culture isolation datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000021

has super-classes
isolate history itemc

culture platec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0004318

Date :
23T10:59:09Z/09/2022
has super-classes
o b i 0000047

curator organization namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001642

has super-classes
investigation datumc

d000830c back to ToC or Class ToC

IRI: http://purl.bioontology.org/ontology/MESH/D000830

has super-classes
animal specimenc

d000835c back to ToC or Class ToC

IRI: http://purl.bioontology.org/ontology/MESH/D000835

has super-classes
animal specimenc

d057805c back to ToC or Class ToC

IRI: http://purl.bioontology.org/ontology/MESH/D057805

has super-classes
animal specimenc

d058751c back to ToC or Class ToC

IRI: http://purl.bioontology.org/ontology/MESH/D058751

has super-classes
animal specimenc

Darwin Core Termsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000119

has super-classes
n c i t c103180c

data aggregatedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001793

has super-classes
data protection rolec

data enumerationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001522

Date :
31T03:45:04Z/01/2022
While "enumeration" is a "data item" not everything referenced within an enumeration qualifies as a "data item". Not to be confused with "data set" which describes "data item"s of the same type that have something in common.
has super-classes
i a o 0000027

data fieldc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0100586

Date :
23T00:33:27.896Z/11/2022
Contributors :
http://orcid.org/0000-0002-9578-0788
has super-classes
i a o 0000027

data field categoryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001121

Date :
23T00:33:27.896Z/11/2022
Contributors :
http://orcid.org/0000-0002-9578-0788
has super-classes
i a o 0000027
has memberop some data fieldc

data obfuscatedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001792

has super-classes
data protection rolec

data protectedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001796

has super-classes
data protection rolec

data protection itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002029

has super-classes
i a o 0000027
has sub-classes
consent datumc

data protection rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001646

has super-classes
b f o 0000023
has sub-classes
data aggregatedc, data obfuscatedc, data protectedc, de-identified datac, limited data setc

data specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001342

has super-classes
o b i 0000658
has sub-classes
contact specificationc, draft WGS lab assembly quality metrics recordc, draft WGS lab bioinformatics process recordc, draft WGS lab sequencing quality metrics recordc, draft WGS lab sequencing recordc, draft isolate details modelc, draft isolate identifier modelc, draft pathogenic epi case exposure recordc, draft pathogenic epi case food recordc, draft pathogenic epi case general information recordc, draft pathogenic epi case isolate detail recordc, draft pathogenic epi case test recordc, draft pathogenic epi case travel recordc, draft sequence repository data - antibiogramc, draft sequence repository data - antibiogram MIC measurementc, draft sequence repository data - food specimenc, draft sequence repository data - geographic locationc, draft sequence repository data - isolatec, draft sequence repository data - isolate passage historyc, draft sequence repository data - sequencingc, draft sequence repository data - sequencing quality controlc, draft sequence repository data - specimen collectionc, draft sequence repository data - submission to EBIc, draft sequence repository data - submission to NCBI/DDBJc, draft sequence repository data - virulencec, draft travel log specificationc, draft tuberculosis - case clinical presentationc, draft tuberculosis - case laboratory testingc, draft tuberculosis - case medicationc, draft tuberculosis - case modelc, draft tuberculosis - case risk factorsc, draft tuberculosis - case specimen characteristicsc, draft tuberculosis - case subject characteristicsc, draft tuberculosis - dataset features and provenancec, drug MIC unit specificationc, food specimen specificationc, raw sequence data processing datumc, specimen collection site - geographic featurec, specimen from organism specificationc, specimen source substance specificationc, specimen strain or isolate identifierc
is disjoint with
draft data standardc, obsolete: field specificationc, n c i t c103180c

database field namec back to ToC or Class ToC

IRI: http://edamontology.org/data_2219

has super-classes
i a o 0000577

date last seen alivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001096

has super-classes
lifespan history itemc

date of conceptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001225

has super-classes
pregnancy history itemc

date of diagnosis (ISO 8601)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002155

has super-classes
date value specification (ISO 8601)c
o b i 0001927 some e f o 0004953c

date of pregnancy outcomec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001673

has super-classes
pregnancy history itemc
afterop some date of conceptionc

date value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002145

has super-classes
o b i 0001933
i a o 0000039op exactly 1
i a o 0000039op max 1 u o 0000003
o b i 0002135dp only date time
has sub-classes
date value specification (ISO 8601)c

date value specification (ISO 8601)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002148

has super-classes
date value specificationc
has sub-classes
date of diagnosis (ISO 8601)c, specimen collection date (ISO 8601)c
has members
PulseNet:IsolatDateni

datum statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001850

A given datum's datum status value is metadata, i.e. a statement about a particular datum, often when no actual data entry or categorical choice for that datum has been made.
has super-classes
i a o 0000027
has sub-classes
missingc, not applicablec, recordedc

de-identified datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001795

has super-classes
data protection rolec

de-novo assemblyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001628

has super-classes
assembly methodc
is disjoint with
mapping (reference based)c

decimal quantity unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001998

has super-classes
g e n e p i o 0001909

decimal value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002142

has super-classes
o b i 0001933
o b i 0002135dp some decimal
has sub-classes
assembly genome size specificationc, duration specificationc, genomic sequence length specificationc, test drug maximum concentration specificationc, test drug minimum concentration specificationc, unsigned long integer value specificationc

definitionc back to ToC or Class ToC

IRI: https://w3id.org/linkml/Definition

has super-classes
elementc
has sub-classes
schema definitionc, slot definitionc

deoxyribonucleic acidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_16991

has super-classes
c h e b i 33696

detection limitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002132

has super-classes
i a o 0000300
is aboutop some i d o 0000547c

diagnosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000073

Date :
08T23:41:09Z/09/2019
has super-classes
analytic datumc
has sub-classes
o m i a b i s 0001008c

diagnosis recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001468

Issue: a diagnosis is a set of diseases, each of which can be marked primary or secondary "Illness causality" with respect to a particular case? Requires a relation annotation.
has super-classes
draft GenEpiO component recordc

diagnostic testc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001420

has super-classes
o b i 0000070
has sub-classes
MLST sequence typingc, microbial 16S RNA typingc, riboprintingc, ribotypingc

dietary restrictionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001205

has super-classes
b f o 0000016
has sub-classes
food avoidancec, special dietc, vegetarianc

direct transmissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/TRANS_0000001

has super-classes
transmission of infectionc
has sub-classes
congenitalc, contactc, droplet spreadc

discharged from hospitalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001849

Damion Dooley note: This term (weakly) implies that the patient is recovered enough to be released from hospital. Technically this isn't a health status though, it is a patient medical service state.
has super-classes
host hospital service statusc
subject health status (UK NHS)c

disease clusterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002133

has super-classes
i a o 0000100
has sub-classes
infectious disease clusterc

disease cluster notification agencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001534

has super-classes
o b i 0000245c

dissolved oxygen concentrationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000035

has super-classes
environmental datumc

DNAse methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001948

has super-classes
library selectionc

DNase-Hypersensitivity strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001980

has super-classes
library strategyc

document citation identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001802

has super-classes
i a o 0000577

draft antibiogram drug test modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001100

has super-classes
draft data standardc

draft data standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000106

has super-classes
o b i 0000658
has sub-classes
draft EBI antimicrobial susceptibility test V. 2017-08-30c, draft Enterobase contextual data standardc, draft GenEpiO component recordc, draft IRIDA standardc, draft NCBI component modelc, draft PulseNet Canada Salmonella submission standardc, draft ReSeq Tuberculosis data platform standardc, draft antibiogram drug test modelc, draft isolate whole genome sequencing modelc, draft pathogenic epidemiology case investigation recordc, draft sequence repository contextual data standardc, draft tuberculosis - specimen contextual data standardc, draft tuberculosis contextual data standardc, draft whole genome sequencing lab test recordc
is disjoint with
data specificationc, obsolete: field specificationc, n c i t c103180c

draft EBI antimicrobial susceptibility test V. 2017-08-30c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002109

has super-classes
draft data standardc

draft Enterobase contextual data standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002129

has super-classes
draft data standardc

draft GenEpiO case epidemiology recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001678

has super-classes
draft GenEpiO component recordc

draft GenEpiO component recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001741

has super-classes
draft data standardc
has sub-classes
container recordc, diagnosis recordc, draft GenEpiO case epidemiology recordc, draft GenEpiO epidemiology case recordc, draft GenEpiO general information recordc, draft GenEpiO isolate environment modelc, draft GenEpiO isolate sequencing modelc, draft GenEpiO isolate source contextc, draft GenEpiO isolate testing modelc, draft subject demographic specificationc, entity history recordc, exposure event recordc, exposure group statistics recordc, exposure history recordc, generic range history recordc, health state recordc, hospitalization event recordc, identifier modelc, isolate history recordc, lab test history recordc, lab test recordc, lifespan history recordc, line list objectc, line list row recordc, medical health record (history / timeline)c, outbreak history recordc, pregnancy history recordc, quality control recordc, sequence recordc, specimen recordc, symptom recordc, test specificationc

draft GenEpiO epidemiology case recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001613

has super-classes
draft GenEpiO component recordc
is aboutop some i d o 0000531c

draft GenEpiO general information recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001638

has super-classes
draft GenEpiO component recordc

draft GenEpiO isolate environment modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001624

has super-classes
draft GenEpiO component recordc

draft GenEpiO isolate sequencing modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001658

has super-classes
draft GenEpiO component recordc

draft GenEpiO isolate source contextc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001809

has super-classes
draft GenEpiO component recordc

draft GenEpiO isolate testing modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001622

has super-classes
draft GenEpiO component recordc

draft IRIDA BioSample modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001612

has super-classes
draft IRIDA standardc

draft IRIDA epidemiological case modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001652

has super-classes
draft IRIDA standardc

draft IRIDA standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001829

has super-classes
draft data standardc
has sub-classes
draft IRIDA BioSample modelc, draft IRIDA epidemiological case modelc

draft ISO sequence repository fieldc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002034

Date :
17T00:43:00Z/11/2019
has super-classes
o b i 0000658
has members
ISO_23418.organization_contact.serviceni

draft isolate details modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001609

has super-classes
data specificationc

draft isolate identifier modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001621

has super-classes
data specificationc

draft isolate whole genome sequencing modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002006

has super-classes
draft data standardc

draft NCBI BioSample geo_loc_name modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001657

has super-classes
draft NCBI component modelc
is aboutop some o b i 0100051

draft NCBI BioSample host modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001707

has super-classes
draft NCBI component modelc
is aboutop some i d o 0000531c

draft NCBI BioSample identifier modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001650

has super-classes
draft NCBI component modelc

draft NCBI BioSample model - mixed clinical and environmental/food/otherc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001581

Damion's note: There are a few different kinds of biosample, and required fields depend on the type selected.
has super-classes
draft NCBI component modelc

draft NCBI component modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001611

has super-classes
draft data standardc
has sub-classes
draft NCBI BioSample geo_loc_name modelc, draft NCBI BioSample host modelc, draft NCBI BioSample identifier modelc, draft NCBI BioSample model - mixed clinical and environmental/food/otherc, draft NCBI isolate source location modelc, latitude and longitude coordinate (ISO 6709)c

draft NCBI isolate source location modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001623

has super-classes
draft NCBI component modelc

draft pathogenic epi case exposure recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000125

has super-classes
data specificationc

draft pathogenic epi case food recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000126

has super-classes
data specificationc

draft pathogenic epi case general information recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000132

has super-classes
data specificationc

draft pathogenic epi case isolate detail recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000133

has super-classes
data specificationc

draft pathogenic epi case test recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000137

has super-classes
data specificationc

draft pathogenic epi case travel recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000140

has super-classes
data specificationc

draft pathogenic epidemiology case investigation recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000124

has super-classes
draft data standardc

draft PulseNet Canada Salmonella submission standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001778

has super-classes
draft data standardc
has componentop exactly 1

draft ReSeq Tuberculosis data platform standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001000

has super-classes
draft data standardc

draft sequence repository contextual data standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002083

has super-classes
draft data standardc

draft sequence repository data - antibiogramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002088

has super-classes
data specificationc

draft sequence repository data - antibiogram MIC measurementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002112

has super-classes
data specificationc

draft sequence repository data - food specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002106

has super-classes
data specificationc

draft sequence repository data - geographic locationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002086

has super-classes
data specificationc

draft sequence repository data - isolatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002084

has super-classes
data specificationc

draft sequence repository data - isolate passage historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002087

has super-classes
data specificationc

draft sequence repository data - sequencingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002085

has super-classes
data specificationc

draft sequence repository data - sequencing quality controlc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002090

has super-classes
data specificationc

draft sequence repository data - specimen collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002081

has super-classes
data specificationc

draft sequence repository data - submission to EBIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002092

has super-classes
data specificationc

draft sequence repository data - submission to NCBI/DDBJc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002091

has super-classes
data specificationc

draft sequence repository data - virulencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002089

has super-classes
data specificationc

draft subject demographic specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001683

has super-classes
draft GenEpiO component recordc

draft travel log specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002108

has super-classes
data specificationc

draft tuberculosis - case clinical presentationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002003

has super-classes
data specificationc

draft tuberculosis - case laboratory testingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002004

has super-classes
data specificationc

draft tuberculosis - case medicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002005

has super-classes
data specificationc

draft tuberculosis - case modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002007

has super-classes
data specificationc

draft tuberculosis - case risk factorsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002002

has super-classes
data specificationc

draft tuberculosis - case specimen characteristicsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002000

has super-classes
data specificationc

draft tuberculosis - case subject characteristicsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002001

has super-classes
data specificationc

draft tuberculosis - dataset features and provenancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001999

has super-classes
data specificationc

draft tuberculosis - specimen contextual data standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001073

has super-classes
draft data standardc

draft tuberculosis contextual data standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001777

has super-classes
draft data standardc

draft WGS lab assembly quality metrics recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000155

has super-classes
data specificationc

draft WGS lab bioinformatics process recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000145

has super-classes
data specificationc

draft WGS lab sequencing quality metrics recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000154

has super-classes
data specificationc

draft WGS lab sequencing recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000146

has super-classes
data specificationc

draft whole genome sequencing lab test recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000144

has super-classes
draft data standardc

droplet spreadc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/TRANS_0000008

has super-classes
direct transmissionc

drug abuse statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001088

has super-classes
behavioural risk factorc

drug MIC unit specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002168

has super-classes
data specificationc
is aboutop some a r o 3004372c

drug use statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001083

has super-classes
behavioural risk factorc

DuPont identification pattern libraryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000066

has super-classes
i a o 0000100

duration specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002176

has super-classes
decimal value specificationc
i a o 0000039op exactly 1 u o 0000003
o b i 0002135dp some
has sub-classes
subject age specificationc

e f o 0000719c back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/efo/EFO_0000719

has super-classes
i a o 0000032

e f o 0001444c back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/efo/EFO_0001444

has super-classes
i a o 0000027

e f o 0001799c back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/efo/EFO_0001799

has super-classes
o b i 0000181
has memberop some n c b i taxon 9606

e f o 0004324c back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/efo/EFO_0004324

has super-classes
organism datumc

e f o 0004953c back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/efo/EFO_0004953

has super-classes
i a o 0000416

e n v o 00000005c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00000005

has super-classes
s i o 000415
located inop some n c i t c25464c
has sub-classes
n c i t c25632c, n c i t c89811c, subnational regionc

e n v o 00002173c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00002173

has super-classes
outbreak human exposure event locationc

e n v o 00002222c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00002222

has super-classes
outbreak human exposure event locationc

e n v o 03501109c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501109

has super-classes
awaiting ontology reviewc

e n v o 03501121c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501121

has super-classes
awaiting ontology reviewc

e n v o 03501127c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501127

has super-classes
awaiting ontology reviewc

e n v o 03501130c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501130

has super-classes
awaiting ontology reviewc

e n v o 03501133c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501133

has super-classes
awaiting ontology reviewc

e n v o 03501135c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501135

has super-classes
awaiting ontology reviewc

e n v o 03501136c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501136

has super-classes
awaiting ontology reviewc

e n v o 03501145c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501145

has super-classes
awaiting ontology reviewc

e n v o 03501152c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501152

has super-classes
awaiting ontology reviewc

e n v o 03501180c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501180

has super-classes
awaiting ontology reviewc

e n v o 03501186c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501186

has super-classes
awaiting ontology reviewc

e n v o 03501194c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501194

has super-classes
awaiting ontology reviewc

e n v o 03501196c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501196

has super-classes
awaiting ontology reviewc

e n v o 03501198c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501198

has super-classes
awaiting ontology reviewc

e n v o 03501204c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501204

has super-classes
awaiting ontology reviewc

e n v o 03501208c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501208

has super-classes
awaiting ontology reviewc

e n v o 03501209c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501209

has super-classes
awaiting ontology reviewc

e n v o 03501210c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501210

has super-classes
awaiting ontology reviewc

e n v o 03501211c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501211

has super-classes
awaiting ontology reviewc

e n v o 03501212c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501212

has super-classes
awaiting ontology reviewc

e n v o 03501213c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501213

has super-classes
awaiting ontology reviewc

e n v o 03501214c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501214

has super-classes
awaiting ontology reviewc

e n v o 03501215c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501215

has super-classes
awaiting ontology reviewc

e n v o 03501216c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501216

has super-classes
awaiting ontology reviewc

e n v o 03501217c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501217

has super-classes
awaiting ontology reviewc

e n v o 03501218c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501218

has super-classes
awaiting ontology reviewc

e n v o 03501219c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501219

has super-classes
awaiting ontology reviewc

e n v o 03501220c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501220

has super-classes
awaiting ontology reviewc

e n v o 03501256c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03501256

has super-classes
awaiting ontology reviewc

e o 0007027c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/EO_0007027

has super-classes
environmental datumc
has sub-classes
e o 0007033c, e o 0007034c, e o 0007035c, e o 0007036c, e o 0007037c, e o 0007038c, e o 0007285c, e o 0007286c

e o 0007033c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/EO_0007033

has super-classes
e o 0007027c

e o 0007034c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/EO_0007034

has super-classes
e o 0007027c

e o 0007035c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/EO_0007035

has super-classes
e o 0007027c

e o 0007036c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/EO_0007036

has super-classes
e o 0007027c

e o 0007037c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/EO_0007037

has super-classes
e o 0007027c

e o 0007038c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/EO_0007038

has super-classes
e o 0007027c

e o 0007285c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/EO_0007285

has super-classes
e o 0007027c

e o 0007286c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/EO_0007286

has super-classes
e o 0007027c

e r o 0000833c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ERO_0000833

has super-classes
o b i 0000070
has sub-classes
e r o 0001286c

e r o 0001183c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ERO_0001183

has super-classes
o b i 0000626c

e r o 0001286c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ERO_0001286

has super-classes
e r o 0000833c
has sub-classes
o b i 0000626c

E. coli H antigen specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002464

has super-classes
string value specificationc
o b i 0001927 some H antigenc
o b i 0002135dp some

E. coli K antigen specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001684

has super-classes
string value specificationc
o b i 0001927 some c h e b i 73772
o b i 0002135dp some

E. coli O antigen specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002465

has super-classes
string value specificationc
o b i 0001927 some O antigenc
o b i 0002135dp some

E. coli serotype specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001686

has super-classes
serotype specificationc

earth area boundary censusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001925

has super-classes
a p o l l o s v 00000173c
has componentop min 0 geospatial namec
has componentop exactly 1 2D boundaryc

EBI ENA Webin environmental featurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002135

has super-classes
specimen datumc

EBI European Nucleotide Archive Webinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002136

has super-classes
n c i t c103180c

EcoLexiconc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001828

has super-classes
source databasec

elementc back to ToC or Class ToC

IRI: https://w3id.org/linkml/Element

has super-classes
o b i 0000658
has sub-classes
definitionc, examplec, local namec, permissible valuec

email address specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002160

has super-classes
string value specificationc
o b i 0001927 some n c i t c42775
o b i 0002135dp only

entity history recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001892

has super-classes
draft GenEpiO component recordc

environment sample scopec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001585

has super-classes
o b i 0001884

environmental datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001626

has super-classes
i a o 0000109
has sub-classes
bacteria densityc, collection depth datumc, conductivity measurement datumc, dissolved oxygen concentrationc, e o 0007027c, f i x 0000278c, n c i t c74723c, nitrate concentrationc, nitrite concentrationc, pH measurementc, precipitationc, soluble inorganic material concentrationc, specimen collection site land usec, stream order categorical measurement datumc, temperature of air - average dailyc, temperature of samplec, total phosphorous concentrationc

Environmental Pathogen Attribute Package (Pathogen.env)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0100581

Date :
23T10:54:21Z/09/2022
Contributors :
https://orcid.org/0000-0002-1107-9135
has super-classes
NCBI standardc

environmental project relevancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001577

has super-classes
project relevancec

environmental specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001246

has super-classes
specimen source material categoryc
has sub-classes
built environment specimenc, food specimenc, natural environment specimenc

environmental testing sampling strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0100548

Contributors :
https://orcid.org/0000-0001-5275-8866
has super-classes
g e n e p i o 0100219

environmental, food or other pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001590

has super-classes
specimen categoryc
member ofop some GSCID-BRC Project and Sample Application Standardc
member ofop some NCBI BioSample Pathogen.cl standardc

epi contact network model - animalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000130

has super-classes
epidemiology contact network modelc

epi contact network model - humanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000129

has super-classes
epidemiology contact network modelc

epidemiology contact network modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000128

has super-classes
contact specificationc
has sub-classes
epi contact network model - animalc, epi contact network model - humanc

epidemiology investigation data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001162

has super-classes
awaiting ontology reviewc

epigenetic markers objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001598

has super-classes
o b i 0001892c

epigenomics projectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000159

has super-classes
project data typec

equal toc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001004

has super-classes
test threshold measurement comparatorc

EST strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001981

has super-classes
library strategyc

Etest (device)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002060

has super-classes
antimicrobial resistance testing method device or reagentc

evolution modelling relevancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001576

has super-classes
project relevancec

ex o 0000038c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ExO_0000038

Damion Dooley note: GenEpiO includes various health status descriptors here; many are annotated as included in the American AHA HIPPA or United Kingdom NHS terminologies. The challenge is to map them or order them in such a way that merged data can be analyzed.
has super-classes
organism datumc
member ofop some AHA HIPPA standardc
member ofop some NHS standardc
has sub-classes
comfortable health statusc, critical but stable health statusc, critical health statusc, fair health statusc, good health statusc, n c i t c115935c, n c i t c28554c, progressing well health statusc, satisfactory health statusc, serious health statusc, undetermined health status - awaiting assessmentc

examplec back to ToC or Class ToC

IRI: https://w3id.org/linkml/Example

has super-classes
elementc
is in domain of
valuedp, value descriptiondp
is in range of
examplesop

exome resequencing projectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000160

has super-classes
project data typec

exome specific data capturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001753

has super-classes
o b i 0001899

experimental subject rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ERO_0001965

has super-classes
person rolec

exposed person rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001538

has super-classes
person rolec

exposure by human contactc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001272

has super-classes
human to human exposure processc
has sub-classes
a p o l l o s v 00000511c, close interpersonal relationship exposurec, sexual contact exposurec

exposure event endc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001487

has super-classes
exposure history itemc

exposure event personc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001251

has super-classes
b f o 0000040
has sub-classes
acquaintancec, n c i t c25741c, n c i t c42709c, n c i t c62649c

exposure event recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001470

has super-classes
draft GenEpiO component recordc

exposure event startc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001488

has super-classes
exposure history itemc

exposure group healthy countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001442

has super-classes
s t a t o 0000047

exposure group ill countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001443

has super-classes
s t a t o 0000047

exposure group statistics recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001257

An exposure group statistics record is a sumary of disease outbreak statistics on a certain date of a group of humans or animals potentially exposed to a pathogen.
has super-classes
draft GenEpiO component recordc

exposure group unknown health status countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001536

has super-classes
s t a t o 0000047

exposure history itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001473

An exposure can be narrowed down to a single date, or can be reasoned to exist with a lower and/or upper bound date. A single date exposure has lower and upper bound dates set as the same value.
has super-classes
i a o 0000416
has sub-classes
exposure event endc, exposure event startc, predicted exposure endc, predicted exposure startc

exposure history recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001464

An exposure can be narrowed down to a single date, or can be reasoned to exist with a lower and/or upper bound date. A single date exposure has lower and upper bound dates set as the same value.
has super-classes
draft GenEpiO component recordc

exposure to individual with diarrheac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001553

has super-classes
human to human exposure processc

exposure via diaper changing (human fecal)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001556

has super-classes
human to human exposure processc

extended organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000087

has super-classes
u b e r o n 0000465

exudate collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002118

has super-classes
o b i 0600005

f i x 0000278c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FIX_0000278

has super-classes
environmental datumc

f o o d o n 00002381c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FOODON_00002381

f o o d o n 00002403c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FOODON_00002403

has super-classes
e n v o 00010483c

f o o d o n 03311737c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FOODON_03311737

f o o d o n 03400361c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FOODON_03400361

has super-classes
b f o 0000040
has sub-classes
foodon product typec

f o o d o n 03411347c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FOODON_03411347

has super-classes
plant productc

f o o d o n 03411564c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FOODON_03411564

has super-classes
e n v o 00010483c

f o o d o n 03420116c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FOODON_03420116

f o o d o n 03480020c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FOODON_03480020

fair health statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001841

has super-classes
ex o 0000038c
subject health status (AHA)c
afterop some stable health statusc
r o 0002083op some satisfactory health statusc

fecal grabc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0004326

Date :
23T11:47:33Z/09/2022
Contributors :
https://orcid.org/0000-0002-1107-9135
has super-classes
feces collectionc

fecal indicatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002232

Date :
08T20:15:43Z/02/2020
Fecal indicator organism collections include bacterial groups such as thermotolerant coliforms or E. coli. Hence, they only infer that pathogens may be present
has super-classes
p c o 0000000

fecal indicator bacteria countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000033

has super-classes
s t a t o 0000047
i a o 0000039op some u o 0000210c or u o 0000212c
is aboutop some fecal indicatorc

feces collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002114

has super-classes
o b i 0600005
has sub-classes
fecal grabc

field experiment sampling strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0100550

Date :
23T11:12:34Z/09/2022
Contributors :
https://orcid.org/0000-0001-5275-8866
has super-classes
g e n e p i o 0100219

finishing strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001982

has super-classes
library strategyc

first line tuberculosis drugc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002071

has super-classes
tuberculosis treatment drugc

FL-cDNA strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001983

has super-classes
library strategyc

floating point value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002143

has super-classes
o b i 0001933
o b i 0002135dp some float

fluid from meat rinsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0004323

Date :
23T11:24:53Z/09/2022
Contributors :
https://orcid.org/0000-0002-1107-9135
has super-classes
animal rinsec

food - liquidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001649

has super-classes
food specimenc

food - solidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001708

has super-classes
food specimenc

food avoidancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001042

This will take on a sub-herarchy of food types.
has super-classes
dietary restrictionc

food brought back from travelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000127

has super-classes
human exposure event - travel datumc

food cultural originc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000139

has super-classes
food specimen datumc

food isolatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002233

Date :
28T23:41:26Z/06/2019
is equivalent to
f o o d o n 00002403c and n c i t c53471c
has super-classes
n c i t c53471c

food related exposure eventc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001037

has super-classes
infectious disease exposure eventc

food specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001249

has super-classes
environmental specimenc
has sub-classes
food - liquidc, food - solidc

food specimen datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001532

The underlying facets will be supplied from the FoodOn food ontology.
has super-classes
specimen datumc
has sub-classes
food cultural originc, food specimen detailc

food specimen detailc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001244

has super-classes
food specimen datumc
has sub-classes
infection-specific food detailc

food specimen specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001533

has super-classes
data specificationc

foodon product typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FOODON_00001002

has super-classes
f o o d o n 03400361c

forkc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002124

has super-classes
n c i t c43167c

FTTc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001823

has super-classes
source databasec

g a z 00000013c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00000013

has super-classes
g a z 00000448c
has sub-classes
g a z 00000457c, g a z 00000458c, g a z 00000459c, g a z 00000460c, g a z 00000462c

g a z 00000106c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00000106

has super-classes
n c i t c80234c

g a z 00000448c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00000448

has super-classes
g e n e p i o 0001886
has sub-classes
g a z 00000013c, g a z 00003941c, g a z 00003944c, g a z 00009573c, g a z 00009715c, g a z 00049570c

g a z 00000457c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00000457

has super-classes
g a z 00000013c

g a z 00000458c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00000458

has super-classes
g a z 00000013c

g a z 00000459c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00000459

has super-classes
g a z 00000013c

g a z 00000460c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00000460

has super-classes
g a z 00000013c

g a z 00000462c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00000462

has super-classes
g a z 00000013c

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n c i t c80234c

g a z 00005660c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00005660

has super-classes
n c i t c25632c

g a z 00005666c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00005666

has super-classes
n c i t c25632c

g a z 00005669c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00005669

has super-classes
n c i t c80234c

g a z 00005680c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00005680

has super-classes
n c i t c80234c

g a z 00005910c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00005910

has super-classes
n c i t c89811c

g a z 00007292c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00007292

has super-classes
n c i t c80234c

g a z 00007370c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00007370

has super-classes
n c i t c80234c

g a z 00007508c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00007508

has super-classes
n c i t c80234c

g a z 00007509c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00007509

has super-classes
n c i t c25632c

g a z 00007610c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00007610

has super-classes
n c i t c80234c

g a z 00007642c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00007642

has super-classes
n c i t c80234c

g a z 00007644c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00007644

has super-classes
n c i t c80234c

g a z 00007698c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00007698

has super-classes
n c i t c80234c

g a z 00007859c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00007859

has super-classes
n c i t c80234c

g a z 00008372c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00008372

has super-classes
n c i t c25632c

g a z 00008375c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00008375

has super-classes
n c i t c80234c

g a z 00008386c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00008386

has super-classes
n c i t c80234c

g a z 00008577c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00008577

has super-classes
n c i t c80234c

g a z 00008583c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00008583

has super-classes
n c i t c80234c

g a z 00008595c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00008595

has super-classes
n c i t c80234c

g a z 00008622c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00008622

has super-classes
n c i t c80234c

g a z 00008678c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00008678

has super-classes
n c i t c80234c

g a z 00008796c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00008796

has super-classes
n c i t c25632c

g a z 00008835c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00008835

has super-classes
n c i t c80234c

g a z 00009150c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00009150

has super-classes
n c i t c87194

g a z 00009152c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00009152

has super-classes
n c i t c80234c

g a z 00009238c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00009238

has super-classes
n c i t c25632c

g a z 00009419c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00009419

has super-classes
n c i t c25632c

g a z 00009431c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00009431

has super-classes
n c i t c25632c

g a z 00009433c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00009433

has super-classes
n c i t c25632c

g a z 00009461c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00009461

has super-classes
n c i t c25632c

g a z 00009465c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00009465

has super-classes
n c i t c25632c

g a z 00009509c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00009509

has super-classes
n c i t c25632c

g a z 00009554c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00009554

has super-classes
n c i t c25632c

g a z 00009573c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00009573

has super-classes
g a z 00000448c

g a z 00009715c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00009715

has super-classes
g a z 00000448c

g a z 00009905c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00009905

has super-classes
n c i t c80234c

g a z 00009998c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00009998

has super-classes
n c i t c80234c

g a z 00010010c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00010010

has super-classes
n c i t c80234c

g a z 00010069c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00010069

has super-classes
n c i t c80234c

g a z 00010088c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00010088

has super-classes
n c i t c80234c

g a z 00010090c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00010090

has super-classes
n c i t c80234c

g a z 00010130c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00010130

has super-classes
n c i t c80234c

g a z 00010365c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00010365

has super-classes
n c i t c80234c

g a z 00010408c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00010408

has super-classes
n c i t c80234c

g a z 00010410c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00010410

has super-classes
n c i t c80234c

g a z 00011335c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00011335

has super-classes
n c i t c80234c

g a z 00012231c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00012231

has super-classes
n c i t c80234c

g a z 00013569c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00013569

has super-classes
n c i t c80234c

g a z 00013579c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00013579

has super-classes
n c i t c80234c

g a z 00013726c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00013726

has super-classes
n c i t c80234c

g a z 00013817c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00013817

has super-classes
n c i t c80234c

g a z 00013864c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00013864

has super-classes
n c i t c80234c

g a z 00013888c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00013888

has super-classes
n c i t c80234c

g a z 00013955c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00013955

has super-classes
n c i t c80234c

g a z 00014914c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00014914

has super-classes
n c i t c25632c

g a z 00016203c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00016203

has super-classes
n c i t c80234c

g a z 00049570c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00049570

has super-classes
g a z 00000448c

g a z 00051448c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00051448

has super-classes
n c i t c80234c

g a z 02000609c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_02000609

has super-classes
n c i t c89811c

g a z 02000896c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_02000896

has super-classes
n c i t c87194

g a z 03000061c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_03000061

has super-classes
n c i t c80234c

g a z 04000000c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_04000000

has super-classes
n c i t c25632c

g a z 07000033c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_07000033

has super-classes
n c i t c80234c

g a z 07000054c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_07000054

has super-classes
n c i t c80234c

g e n e p i o 0000099c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000099

has super-classes
o b i 0001616

g e n e p i o 0000100c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000100

has super-classes
s i o 000729

g e n e p i o 0000101c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000101

has super-classes
strain identifierc

g e n e p i o 0000102c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000102

has super-classes
case identifierc

g e n e p i o 0001433c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001433

has super-classes
user identifierc

g e n e p i o 0001935c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001935

g o 0008150c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0008150

has super-classes
b f o 0000015
has sub-classes
transmission of infectionc

generic range history recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001893

has super-classes
draft GenEpiO component recordc

genome annotation algorithmc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000095

has super-classes
genomic sequencing annotation datumc

genome annotation sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000096

has super-classes
genomic sequencing annotation datumc

genome material from specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001115

has super-classes
o b i 0001882
is aboutop some s o 0001026c

genome sequencing projectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000161

has super-classes
project data typec

genome size delta ratioc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001563

has super-classes
assembly quality control datumc

genome size delta ratio QC thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001564

has super-classes
assembly quality control datumc

genomic sequence length specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002152

has super-classes
decimal value specificationc
i a o 0000039op exactly 1

genomic sequencing annotation datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001423

has super-classes
i a o 0000027
has sub-classes
genome annotation algorithmc, genome annotation sourcec

genomic sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001966

has super-classes
library sourcec

Genomic Standards Consortium (GSC) standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002075

has super-classes
n c i t c103180c
has sub-classes
Minimum Information about any (x) Sequence (MIxS)c, Minimum information about a marker gene sequencec

genus of pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001787

has super-classes
taxonomic datumc
is aboutop some n c b i taxon genusc

geographic location datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001654

has super-classes
i a o 0000109

Geonamesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001827

has super-classes
source databasec

geospatial namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002017

has super-classes
n c i t c42614c
is aboutop some g e n e p i o 0001886

GM-NEGc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002061

has super-classes
antimicrobial resistance testing method device or reagentc

GNISIDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001833

has super-classes
source databasec

good health statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001840

has super-classes
ex o 0000038c
subject health status (AHA)c
afterop some progressing well health statusc
r o 0002083op some n c i t c115935c

greater thanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001006

has super-classes
test threshold measurement comparatorc

greater than or equal toc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001005

has super-classes
test threshold measurement comparatorc

GSCID-BRC Core Project standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000112

has super-classes
GSCID-BRC Project and Sample Application Standardc

GSCID-BRC Core Sample standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000111

has super-classes
GSCID-BRC Project and Sample Application Standardc
is aboutop some o b i 0100051

GSCID-BRC Project and Sample Application Standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000002

has super-classes
National Institute of Allergy and Infectious Disease standardc
has sub-classes
GSCID-BRC Core Project standardc, GSCID-BRC Core Sample standardc

H antigenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001077

has super-classes
o b i 1110034

h p 0012830c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HP_0012830

has super-classes
b f o 0000019

h p 0031292c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HP_0031292

has super-classes
a r o 3004430

hand scoopc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002125

has super-classes
n c i t c43167c

health authorityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001286

This list would be customized to include organizations local to an application's software installation. It is an example of a set of ontology terms that would best be organized by a central authority if federated installations need to share investigator contact info for example.
has super-classes
o b i 0000245c
has members
g e n e p i o 0001367ni

health care personal identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001427

has super-classes
i a o 0000577

health state recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001259

has super-classes
draft GenEpiO component recordc

health status history datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001843

has super-classes
organism datumc
is aboutop some o b i 0100026 and (r o 0000087 some o b i 0000093c)
has sub-classes
c v d o 0000597c, o m i t 0001642c, o m i t 0004227c, o m i t 0012935c, o m i t 0013001c

health status trend datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001812

has super-classes
organism datumc
is aboutop some o b i 0100026 and (r o 0000087 some o b i 0000093c)
has sub-classes
resolving health trendc, stable health trendc, worsening health trendc

Helicos platformc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002682

Date :
24T22:50:49Z/04/2020
has super-classes
sequencing platform (brand)c

hikingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001027

has super-classes
human general activityc

HIV risk statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001086

has super-classes
behavioural risk factorc

HIV statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001085

has super-classes
behavioural risk factorc

HMPR methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001949

has super-classes
library selectionc

homeless statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001078

has super-classes
behavioural risk factorc

hospital admission datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001486

has super-classes
hospitalization history itemc

hospital discharge datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001493

has super-classes
hospitalization history itemc
afterop some hospital admission datec

hospitalization event recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001471

has super-classes
draft GenEpiO component recordc

hospitalization history itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001490

has super-classes
i a o 0000416
has sub-classes
hospital admission datec, hospital discharge datec

host health complications at time of specimen collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0100289

Date :
31T23:52:14Z/01/2022
has super-classes
personal health datumc
is aboutop some n c i t c2959c
is aboutop some o b i 0001619

host hospital service statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002019

has super-classes
organism datumc
has sub-classes
admitted to hospitalc, discharged from hospitalc, treated and released (not admitted to hospital)c, treated and transferredc

host illness associated withc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001682

has super-classes
awaiting ontology reviewc
has sub-classes
x c o 0000412c

host profile or identifersc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001615

has super-classes
s i o 000136

host role at time of specimen collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO:0100292

Date :
31T23:53:59Z/01/2022
has super-classes
personal health datumc
is aboutop some i d o 0000629c
is aboutop some o b i 0001619

human clinical specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001731

has super-classes
c h m o 0002743c
specimen source material categoryc
has sub-classes
human clinical specimen - invasivec, patient specimenc

human clinical specimen - invasivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001735

has super-classes
human clinical specimenc

human exposure event - travel datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001058

has super-classes
organism datumc
has sub-classes
food brought back from travelc, infection aquired during travelc, travel destinationc, travel modec, travel reasonc

human general activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001444

has super-classes
b f o 0000015
has sub-classes
campingc, hikingc, human water activityc, p c o 0000033c

human related exposure eventc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001049

has super-classes
infectious disease exposure eventc

human to human exposure processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001275

has super-classes
b f o 0000015
has sub-classes
exposure by human contactc, exposure to individual with diarrheac, exposure via diaper changing (human fecal)c, other human exposurec

human water activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001277

has super-classes
human general activityc
has sub-classes
canoeing / kayaking / boatingc, swimming / wadingc

Hybrid Selection methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001950

has super-classes
library selectionc

i d o 0000495c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000495

is equivalent to
o g m s 0000063c and (realized inop some o b i 1110040) and (has participantop some i d o 0000531c)

i d o 0000531c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000531

is equivalent to
o b i 0100026 and (location ofop some o b i 0000925)
has sub-classes
a p o l l o s v 00000236c

i d o 0000629c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000629

is equivalent to
organism rolec and (inheres inop some i d o 0000531c)

I2B2 Data Protection role standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000109

has super-classes
n c i t c103180c

identifier modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001641

has super-classes
draft GenEpiO component recordc

identifier statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001645

has super-classes
investigation datumc
has sub-classes
n c i t c25251c, n c i t c25667c, original submissionc, previous (archaic) identifierc

illness causalityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001543

has super-classes
analytic datumc
has sub-classes
n c i t c25251c, n c i t c25667c, pre-existing conditionc

Illumina platformc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001923

has super-classes
sequencing platform (brand)c

immigration year of arrivalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001046

has super-classes
organism location history datumc

in processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001662

has super-classes
missingc

incarceration statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001084

has super-classes
behavioural risk factorc

indirect transmissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/TRANS_0000002

has super-classes
transmission of infectionc
has sub-classes
common vehicle transmissionc, vehicle-born ingestionc

induced abortionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001670

has super-classes
outcome of pregnancy associated with illnessc

industrial processing relevancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001575

has super-classes
project relevancec

infection aquired during travelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000123

has super-classes
human exposure event - travel datumc

infection detail datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001664

NECESSARY? : What details are categorical and what are freehand? This item was originally too broad; moved sub-items to Treatment.
has super-classes
patient as host datumc
has sub-classes
antibiotics requiredc

infection-specific food detailc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001038

has super-classes
food specimen detailc

infectious disease case datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001229

has super-classes
i a o 0000027

infectious disease clusterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002134

has super-classes
disease clusterc

infectious disease exposure eventc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001048

has super-classes
b f o 0000011
has sub-classes
animal related exposure eventc, food related exposure eventc, human related exposure eventc, water related exposure eventc

infectious disease treatmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001186

has super-classes
patient as host datumc
has sub-classes
antibiotic treatmentc, n c i t c15346c

inhalationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ExO_0000057

has super-classes
common vehicle transmissionc

injection drug use statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001089

has super-classes
behavioural risk factorc

INSDC country qualifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001113

has super-classes
INSDC standardc
string value specificationc
o b i 0001927 some n c i t c25464c
o b i 0002135dp only

INSDC institution codec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001651

has super-classes
organization identifierc

INSDC standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001666

has super-classes
n c i t c103180c
has sub-classes
INSDC country qualifierc

investigation datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001607

has super-classes
i a o 0000109
has sub-classes
curator organization namec, identifier statusc

investigation identifier specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002128

has super-classes
string value specificationc
o b i 0001927 some o b i 0001628

investigative subjectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C79916

has super-classes
b f o 0000040
has sub-classes
animal exposure event by materialc, outbreak exposure event locationc, subject organismc, water exposure by sourcec

Ion Torrent platformc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002683

Date :
24T22:54:06Z/04/2020
has super-classes
sequencing platform (brand)c

ISO3166-1c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001830

has super-classes
n c i t c103180c

ISO3166-2c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001831

has super-classes
n c i t c103180c

isolate (pathogen) identificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001806

has super-classes
assembly and annotation project objectivec

isolate history itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001491

has super-classes
i a o 0000416
has sub-classes
culture frozen datec, culture isolation datec, isolate received datec, isolate upload datec, sequencing run datec, upload modified datec

isolate history recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001465

has super-classes
draft GenEpiO component recordc

isolate identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001644

has super-classes
i a o 0000577

isolate identifier specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001791

has super-classes
string value specificationc
o b i 0001927 some isolate identifierc

isolate organism rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001172

has super-classes
organism rolec
has sub-classes
commensal rolec, pathogen rolec, symbiotic rolec

isolate passage history datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001054

has super-classes
laboratory sequencing datumc
has sub-classes
number of passagesc, passage protocolc

isolate preparation facilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002015

An isolate preparation facility is a type of organization that provides the service of isolating organisms of interest from provided specimens.
has super-classes
o b i 0000245c

isolate preparation servicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002224

Date :
03T02:51:51Z/05/2019
has super-classes
specimen related servicec

isolate raw read filenamec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000148

has super-classes
laboratory sequencing datumc

isolate received datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000023

has super-classes
isolate history itemc

isolate sequence filenamec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000135

has super-classes
laboratory sequencing datumc

isolate upload datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000024

has super-classes
isolate history itemc

isolation mediumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002107

has super-classes
o b i 0000079

ITISc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001813

has super-classes
source databasec

jacuzzi waterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001219

has super-classes
treated water - warm/hotc

Kpnlc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001715

has super-classes
secondary enzyme (LMACI)c

lab test datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001709

has super-classes
i a o 0000027
has sub-classes
primary enzyme (LMAAI)c, secondary enzyme (LMACI)c

lab test history recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001302

has super-classes
draft GenEpiO component recordc

lab test recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001424

ISSUE: lab test results are appropriate to lab test types. Logic around that?
has super-classes
draft GenEpiO component recordc

lab test result datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001499

has super-classes
test history itemc

laboratory datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001231

has super-classes
i a o 0000027

laboratory sequencing datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001681

has super-classes
i a o 0000027
has sub-classes
adapter sequencec, bioinformatics pipeline namec, bioinformatics pipeline protocolc, bioinformatics pipeline versionc, isolate passage history datumc, isolate raw read filenamec, isolate sequence filenamec, library construction protocolc, library namec, library preparation kitc, library preparation kit versionc, library selectionc, library sourcec, library strategyc, read adapter trimmingc, read adapter trimming softwarec, read lengthc, read paired-end merging softwarec, read trimming and filtering softwarec, sequence numberc, sequencer flow cell cluster densityc, sequencing applicationc, sequencing assembly datumc, sequencing chemistryc, sequencing count of chemistry cyclesc, sequencing dna extraction method datumc, sequencing kit versionc, sequencing locationc, sequencing run datec, sequencing run multiplex identifiersc, sequencing workflowc

last resort antibioticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002072

has super-classes
antimicrobial resistance test drugc

latitude and longitude coordinate (ISO 6709)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001656

A geographic coordinate entity composed of both latitude and longitude components.
has super-classes
draft NCBI component modelc

latitude and longitude coordinate (NCBI BioSample format)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002141

has super-classes
i a o 0000300
o b i 0002135dp some

less thanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001002

has super-classes
test threshold measurement comparatorc

less than or equal toc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001003

has super-classes
test threshold measurement comparatorc

library construction protocolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001994

has super-classes
laboratory sequencing datumc

library namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001995

has super-classes
laboratory sequencing datumc
i a o 0000300

library preparation kitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000085

has super-classes
laboratory sequencing datumc

library preparation kit versionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000149

has super-classes
laboratory sequencing datumc

library selectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001940

has super-classes
laboratory sequencing datumc
has sub-classes
5-methylcytidine antibody methodc, CAGE methodc, CF-H methodc, CF-M methodc, CF-S methodc, CF-T methodc, ChIP methodc, DNAse methodc, HMPR methodc, Hybrid Selection methodc, MBD2 protein methyl-CpG binding domain methodc, MF methodc, MNase methodc, MSLL methodc, PCR methodc, RACE methodc, RANDOM PCR methodc, RANDOM methodc, RT-PCR methodc, Reduced Representation methodc, Restriction Digest methodc, cDNA methodc, other library methodc, size fractionation methodc

library sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001965

has super-classes
laboratory sequencing datumc
has sub-classes
genomic sourcec, metagenomic sourcec, metatranscriptomic sourcec, other library sourcec, synthetic sourcec, transcriptomic sourcec, viral RNA sourcec

library strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001973

has super-classes
laboratory sequencing datumc
has sub-classes
Bisulfite-Seq strategyc, CTS strategyc, ChIP-Seq strategyc, DNase-Hypersensitivity strategyc, EST strategyc, FL-cDNA strategyc, MBD-Seq strategyc, MNase-Seq strategyc, MRE-Seq strategyc, MeDIP-Seq strategyc, RNA-Seq strategyc, WCS strategyc, WGS strategyc, WXS strategyc, amplicon strategyc, clone end strategyc, clone strategyc, finishing strategyc, other library strategyc, pool clone strategyc

lifespan history itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001126

has super-classes
i a o 0000416
has sub-classes
date last seen alivec, n c i t c68615c, n c i t c70810c

lifespan history recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001226

has super-classes
draft GenEpiO component recordc

limited data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001794

has super-classes
data protection rolec

line list objectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001430

has super-classes
draft GenEpiO component recordc

line list row recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001740

has super-classes
draft GenEpiO component recordc

listeria antigenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001689

has super-classes
o b i 0001933
o b i 0001927 some c h e b i 59132
o b i 0002135dp some
has sub-classes
listeria serotype 1/2c, listeria serotype 1/2ac, listeria serotype 1/2bc, listeria serotype 1/2cc, listeria serotype 3ac, listeria serotype 3bc, listeria serotype 3cc, listeria serotype 4ac, listeria serotype 4bc, listeria serotype 4cc, listeria serotype 4dc, listeria serotype 4ec, non-monocytogenes listeria antigenc

listeria antigen specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002171

has super-classes
string value specificationc
o b i 0001927 some listeria antigenc
o b i 0002135dp some

listeria serotype 1/2c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001694

has super-classes
listeria antigenc

listeria serotype 1/2ac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001691

has super-classes
listeria antigenc

listeria serotype 1/2bc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001692

has super-classes
listeria antigenc

listeria serotype 1/2cc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001693

has super-classes
listeria antigenc

listeria serotype 3ac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001695

has super-classes
listeria antigenc

listeria serotype 3bc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001696

has super-classes
listeria antigenc

listeria serotype 3cc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001703

has super-classes
listeria antigenc

listeria serotype 4ac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001697

has super-classes
listeria antigenc

listeria serotype 4bc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001698

has super-classes
listeria antigenc

listeria serotype 4cc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001699

has super-classes
listeria antigenc

listeria serotype 4dc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001700

has super-classes
listeria antigenc

listeria serotype 4ec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001701

has super-classes
listeria antigenc

live birthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001671

has super-classes
outcome of pregnancy associated with illnessc

local namec back to ToC or Class ToC

IRI: https://w3id.org/linkml/LocalName

has super-classes
elementc
is in domain of
local name valuedp, local_name_sourcedp

LTERc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001834

has super-classes
source databasec

m l v ac back to ToC or Class ToC

IRI: http://purl.phyloviz.net/ontology/typon#MLVA

has super-classes
test specificationc

map projectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001103

has super-classes
project data typec

mapping (reference based)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002028

has super-classes
assembly methodc
is disjoint with
de-novo assemblyc

mapping objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001600

has super-classes
o b i 0001892c

mass spectrometry project methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001604

has super-classes
o b i 0001896

MBD-Seq strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001984

has super-classes
library strategyc

MBD2 protein methyl-CpG binding domain methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001951

has super-classes
library selectionc

mean contig lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002138

has super-classes
assembly quality control datumc
i a o 0000032

medical health record (history / timeline)c back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_001027

has super-classes
draft GenEpiO component recordc

medical knowledge relevancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001574

has super-classes
project relevancec

MeDIP-Seq strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001987

has super-classes
library strategyc

MESHc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001818

has super-classes
source databasec

metagenome assembly projectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001105

has super-classes
project data typec

metagenome projectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001104

has super-classes
project data typec

metagenomic sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001967

has super-classes
library sourcec

metagenomic species identificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001801

has super-classes
assembly and annotation project objectivec

metatranscriptomic sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001968

has super-classes
library sourcec

methadone use statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001091

has super-classes
behavioural risk factorc

MF methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001952

has super-classes
library selectionc

MGI platformc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0004325

Date :
23T11:43:21Z/09/2022
Contributors :
https://orcid.org/0000-0001-5275-8866
has super-classes
sequencing platform (brand)c

MIC diffusion measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002110

has super-classes
i a o 0000032
is aboutop some n c i t c128985c

MIC diffusion measurement specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002150

has super-classes
o b i 0001931
is aboutop some a r o 3004391c
o b i 0001927 some a r o 3004371c
i a o 0000039op exactly 1 u o 0000016
o b i 0002135dp some

MIC dilution measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002044

has super-classes
i a o 0000032
is aboutop some n c i t c128985c

MIC dilution measurement specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002153

has super-classes
o b i 0001931
is aboutop some a r o 3004397c
o b i 0001927 some a r o 3004371c
i a o 0000039op exactly 1
o b i 0002135dp only

microbial 16S RNA typingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002234

Date :
24T19:06:05Z/04/2020
has super-classes
diagnostic testc

micromole per kilogramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001761

has super-classes
u o 0000051c

micromole per litrec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001762

has super-classes
u o 0000051c

millimetres per dayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001757

has super-classes
u o 0000060c

millisiemens per centimetrec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001759

has super-classes
u o 0000000

Minimum information about a marker gene sequencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000008

has super-classes
Genomic Standards Consortium (GSC) standardc

Minimum Information about any (x) Sequence (MIxS)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000003

has super-classes
Genomic Standards Consortium (GSC) standardc

MIRU24 - Canadian standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001012

has super-classes
test specificationc

MIRU24 - international standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001011

has super-classes
test specificationc

missingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001618

has super-classes
datum statusc
has sub-classes
in processc, not collectedc, not providedc, restricted accessc

MLST clonal complexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000049

has super-classes
test specificationc

MLST sequence typingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000050

has super-classes
diagnostic testc

MNase methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001953

has super-classes
library selectionc

MNase-Seq strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001985

has super-classes
library strategyc

model organism relevancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001578

has super-classes
project relevancec

monoisolate sample scopec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001582

has super-classes
o b i 0001884

MRE-Seq strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001986

has super-classes
library strategyc

MSLL methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001954

has super-classes
library selectionc

multiisolate sample scopec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001583

has super-classes
o b i 0001884

multispecies sample scopec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001584

has super-classes
o b i 0001884

municipal waterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001045

has super-classes
treated water - ambient temperaturec

Mycobacterium tuberculosis lineagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002008

has super-classes
organism datumc
has sub-classes
TB lineage 1 - Indo-Oceanicc, TB lineage 2 - East-Asian, includes Bejingc, TB lineage 3 - East-African Indian, includes CAS/Delhic, TB lineage 4 - Euro-American, includes Haarlem, LAM3, X, T, F11, H37Rvc, TB lineage 5 - West African 1c, TB lineage 6 - West African 2c, TB lineage 7 - Ethiopiac

n c b i taxon genusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_genus

has super-classes
taxonomic rank

n c b i taxon speciesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_species

has super-classes
taxonomic rank

n c i t c100128c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C100128

has super-classes
n c i t c25190c
has sub-classes
n c i t c62649c

n c i t c103180c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C103180

has super-classes
o b i 0000658
has sub-classes
ANSI INCITS 38c, Darwin Core Termsc, EBI European Nucleotide Archive Webinc, Genomic Standards Consortium (GSC) standardc, I2B2 Data Protection role standardc, INSDC standardc, ISO3166-1c, ISO3166-2c, NCBI standardc, NHS standardc, National Institute of Allergy and Infectious Disease standardc, n c i t c20108c, public health data standardc, the Global Microbial Identifier Minimum Data for Matching (MDM) Standardc
is disjoint with
draft data standardc, data specificationc, obsolete: field specificationc

n c i t c103245c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C103245

has super-classes
n c i t c41275c

n c i t c105370c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C105370

has super-classes
c h e b i 33697

n c i t c106561c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C106561

has super-classes
organism datumc

n c i t c113419c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C113419

has super-classes
n c i t c25190c

n c i t c114551c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C114551

has super-classes
b f o 0000023

n c i t c115935c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C115935

has super-classes
ex o 0000038c
subject health status at time of specimen collectionc
subject health status (GSCID-BRC)c
subject disease outcomec
subject health status (NCIT)c
afterop some good health statusc

n c i t c1225c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C1225

has super-classes
o m i t 0021725c
has sub-classes
Shiga toxin 1c, Shiga toxin 2c

n c i t c124295c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C124295

has super-classes
organism datumc
is aboutop some pregnant womanc

n c i t c12471c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C12471

has super-classes
a r o 3004430

n c i t c126054c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C126054

has super-classes
subject health status (NCIT)c

n c i t c127784c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C127784

has super-classes
n c i t c25190c

n c i t c128985c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C128985

has super-classes
o b i 0000070

n c i t c13235c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C13235

has super-classes
n c i t c49641c

n c i t c13308c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C13308

has super-classes
u b e r o n 0006925

n c i t c13347c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C13347

has super-classes
u b e r o n 0006314

n c i t c14419c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C14419

has super-classes
b f o 0000027

n c i t c15189c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C15189

has super-classes
o b i 0600005

n c i t c15327c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C15327

has super-classes
o b i 0600005

n c i t c15346c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C15346

has super-classes
infectious disease treatmentc

n c i t c15631c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C15631

has super-classes
o b i 0600005

n c i t c16143c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C16143

has super-classes
o b i 0000245c

n c i t c16731c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C16731

has super-classes
patient typec

n c i t c16960c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C16960

has super-classes
n c i t c25190c

n c i t c17445c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C17445

has super-classes
n c i t c25190c

n c i t c17471c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C17471

has super-classes
n c i t c25190c

n c i t c17627c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C17627

has super-classes
o b i 0002814

n c i t c17734c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C17734

has super-classes
p c o 0000001

n c i t c20108c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C20108

has super-classes
n c i t c103180c

n c i t c20587c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C20587

has super-classes
p c o 0000001

n c i t c25155c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25155

has super-classes
g o 0000003c

n c i t c25189c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25189

has super-classes
patient typec

n c i t c25190c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25190

has super-classes
o b i 0100026
has sub-classes
n c i t c100128c, n c i t c113419c, n c i t c127784c, n c i t c16960c, n c i t c17445c, n c i t c17471c, n c i t c41256c, n c i t c42709c, n c i t c53287c, o b i 0001889c, patient typec

n c i t c25191c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25191

has super-classes
n c i t c42614c

n c i t c25251c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25251

has super-classes
illness causalityc
identifier statusc

n c i t c25464c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25464

has super-classes
s i o 000415

n c i t c25610c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25610

has super-classes
subject health status at time of specimen collectionc
subject health status (GSCID-BRC)c
subject health status (NCIT)c

n c i t c25632c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25632

has super-classes
e n v o 00000005c
has sub-classes
g a z 00000641c, g a z 00001066c, g a z 00001508c, g a z 00002547c, g a z 00002561c, g a z 00002805c, g a z 00002810c, g a z 00003198c, g a z 00003204c, g a z 00003214c, g a z 00003626c, g a z 00003717c, g a z 00003730c, g a z 00003765c, g a z 00004026c, g a z 00004095c, g a z 00004477c, g a z 00004665c, g a z 00004706c, g a z 00004980c, g a z 00005000c, g a z 00005040c, g a z 00005074c, g a z 00005109c, g a z 00005139c, g a z 00005210c, g a z 00005247c, g a z 00005343c, g a z 00005421c, g a z 00005643c, g a z 00005660c, g a z 00005666c, g a z 00007509c, g a z 00008372c, g a z 00008796c, g a z 00009238c, g a z 00009419c, g a z 00009431c, g a z 00009433c, g a z 00009461c, g a z 00009465c, g a z 00009509c, g a z 00009554c, g a z 00014914c, g a z 04000000c
is disjoint with
subnational regionc, n c i t c87194, n c i t c89811c

n c i t c25667c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25667

has super-classes
illness causalityc
identifier statusc

n c i t c25690c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25690

has super-classes
addressc

n c i t c25717c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25717

has super-classes
organism datumc

n c i t c25741c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25741

has super-classes
exposure event personc
n c i t c53287c

n c i t c28147c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C28147

has super-classes
n c i t c49641c

n c i t c28221c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C28221

has super-classes
o b i 0600005

n c i t c28554c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C28554

has super-classes
ex o 0000038c
subject health status at time of specimen collectionc
subject health status (GSCID-BRC)c
subject disease outcomec
subject health status (UK NHS)c
subject health status (AHA)c
subject health status (NCIT)c
s i o 010057
r o 0002083op some critical health statusc
is disjoint with
n c i t c37987c

n c i t c37984c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C37984

has super-classes
e n v o 00000073

n c i t c37987c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C37987

has super-classes
s i o 010057
is disjoint with
n c i t c28554c

n c i t c3833c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C3833

has super-classes
b f o 0000019

n c i t c41085c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C41085

has super-classes
n c i t c60776c

n c i t c41256c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C41256

has super-classes
n c i t c25190c

n c i t c41275c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C41275

has super-classes
n c i t c43186c
has sub-classes
n c i t c103245c, n c i t c43209c, n c i t c43214c

n c i t c41277c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C41277

has super-classes
o b i 0002814
has sub-classes
tube containing antimicrobialc, tube containing media or preservativec

n c i t c42614c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C42614

has super-classes
i a o 0000300
has sub-classes
geospatial namec, n c i t c25191c, n c i t c93582c, n c i t c93874c, subject organism common namec

n c i t c42709c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C42709

has super-classes
exposure event personc
n c i t c25190c

n c i t c42856c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C42856

has super-classes
o b i 0002814

n c i t c43167c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C43167

has super-classes
n c i t c43186c
has sub-classes
Whirlpak sampling bagc, forkc, hand scoopc, spoonc, trierc

n c i t c43169c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C43169

has super-classes
n c i t c43186c

n c i t c43186c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C43186

has super-classes
o b i 0002814
has sub-classes
n c i t c41275c, n c i t c43167c, n c i t c43169c

n c i t c43209c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C43209

has super-classes
n c i t c41275c

n c i t c43214c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C43214

has super-classes
n c i t c41275c

n c i t c45908c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C45908

has super-classes
p a t o 0001894c

n c i t c45910c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C45910

has super-classes
p a t o 0000047c

n c i t c48443c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C48443

has super-classes
s i o 000136

n c i t c48519c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C48519

has super-classes
u o 0000006c

n c i t c48531c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C48531

has super-classes
u o 0000006c

n c i t c52009c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C52009

has super-classes
o b i 0600005

n c i t c53287c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C53287

has super-classes
n c i t c25190c
has sub-classes
n c i t c25741c

n c i t c53471c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C53471

has super-classes
o b i 0100051
has sub-classes
food isolatec

n c i t c54014c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C54014

has super-classes
p a t o 0000383c

n c i t c60776c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C60776

has super-classes
i a o 0000027
has sub-classes
n c i t c41085c

n c i t c62649c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C62649

has super-classes
exposure event personc
n c i t c100128c

n c i t c63362c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C63362

has super-classes
vaccum devicec

n c i t c68615c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C68615

has super-classes
lifespan history itemc
pregnancy history itemc
afterop some date of conceptionc

n c i t c70810c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C70810

has super-classes
lifespan history itemc

n c i t c71164c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C71164

has super-classes
animal specimenc

n c i t c71898c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C71898

has super-classes
i a o 0000300

n c i t c74723c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C74723

has super-classes
environmental datumc

n c i t c77683c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C77683

has super-classes
b f o 0000029

n c i t c80234c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C80234

has super-classes
e n v o 00000062
s i o 000415
has sub-classes
g a z 00000106c, g a z 00002616c, g a z 00002648c, g a z 00002651c, g a z 00002705c, g a z 00002718c, g a z 00002734c, g a z 00002756c, g a z 00002826c, g a z 00002831c, g a z 00002844c, g a z 00002855c, g a z 00002896c, g a z 00003034c, g a z 00003108c, g a z 00003138c, g a z 00003176c, g a z 00003192c, g a z 00003194c, g a z 00003199c, g a z 00003269c, g a z 00003287c, g a z 00003382c, g a z 00003603c, g a z 00003628c, g a z 00003651c, g a z 00003708c, g a z 00003724c, g a z 00003728c, g a z 00003740c, g a z 00003742c, g a z 00003746c, g a z 00003751c, g a z 00003757c, g a z 00003763c, g a z 00003775c, g a z 00004028c, g a z 00004031c, g a z 00004040c, g a z 00004098c, g a z 00004135c, g a z 00004373c, g a z 00004480c, g a z 00004495c, g a z 00004517c, g a z 00004529c, g a z 00004676c, g a z 00004682c, g a z 00004699c, g a z 00004704c, g a z 00004762c, g a z 00004983c, g a z 00005004c, g a z 00005015c, g a z 00005033c, g a z 00005042c, g a z 00005075c, g a z 00005100c, g a z 00005121c, g a z 00005137c, g a z 00005151c, g a z 00005153c, g a z 00005160c, g a z 00005165c, g a z 00005196c, g a z 00005221c, g a z 00005223c, g a z 00005258c, g a z 00005277c, g a z 00005299c, g a z 00005322c, g a z 00005382c, g a z 00005432c, g a z 00005448c, g a z 00005453c, g a z 00005458c, g a z 00005464c, g a z 00005469c, g a z 00005491c, g a z 00005621c, g a z 00005631c, g a z 00005649c, g a z 00005669c, g a z 00005680c, g a z 00007292c, g a z 00007370c, g a z 00007508c, g a z 00007610c, g a z 00007642c, g a z 00007644c, g a z 00007698c, g a z 00007859c, g a z 00008375c, g a z 00008386c, g a z 00008577c, g a z 00008583c, g a z 00008595c, g a z 00008622c, g a z 00008678c, g a z 00008835c, g a z 00009152c, g a z 00009905c, g a z 00009998c, g a z 00010010c, g a z 00010069c, g a z 00010088c, g a z 00010090c, g a z 00010130c, g a z 00010365c, g a z 00010408c, g a z 00010410c, g a z 00011335c, g a z 00012231c, g a z 00013569c, g a z 00013579c, g a z 00013726c, g a z 00013817c, g a z 00013864c, g a z 00013888c, g a z 00013955c, g a z 00016203c, g a z 00051448c, g a z 03000061c, g a z 07000033c, g a z 07000054c, s i o 000666c

n c i t c82508c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C82508

has super-classes
subject health status (NCIT)c

n c i t c85540c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C85540

has super-classes
o b i 0000011
has sub-classes
a r o 3004391c, a r o 3004397c, n c i t c85555c, n c i t c85596c

n c i t c85555c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C85555

has super-classes
n c i t c85540c

n c i t c85596c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C85596

has super-classes
n c i t c85540c

n c i t c85697c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C85697

has super-classes
a r o 3004397c

n c i t c87500c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C87500

has super-classes
n c b i taxon 43738

n c i t c87913c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C87913

has super-classes
specimen collection sitec

n c i t c89084c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C89084

has super-classes
i a o 0000027

n c i t c89811c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C89811

has super-classes
e n v o 00000005c
has sub-classes
g a z 00001016c, g a z 00002573c, g a z 00002784c, g a z 00003956c, g a z 00004187c, g a z 00005252c, g a z 00005910c, g a z 02000609c
is disjoint with
subnational regionc, n c i t c25632c

n c i t c93044c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C93044

has super-classes
o b i 0100026

n c i t c93582c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C93582

has super-classes
n c i t c42614c

n c i t c93874c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C93874

has super-classes
n c i t c42614c

n c i t c98904c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C98904

has super-classes
d o i d 7

National Institute of Allergy and Infectious Disease standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002073

has super-classes
n c i t c103180c
has sub-classes
GSCID-BRC Project and Sample Application Standardc

National Laboratory for Enteric Pathogens Identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001781

has super-classes
o b i 0001616

natural environment specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001250

has super-classes
environmental specimenc

NCBI Antibiogram standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001007

has super-classes
NCBI standardc
is disjoint with
NCBI SRA meta information standardc, NCBI BioSample Pathogen.cl standardc, NCBI BioProject standardc

NCBI BioProject standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001836

NCBI lists project data type and other controlled vocabulary fields at : https://www.ncbi.nlm.nih.gov/books/NBK54364/
has super-classes
NCBI standardc
has componentop exactly 1
has componentop max 1 investigation identifier specificationc
has componentop max 1 sequencing facility name specificationc
has componentop max 1
has componentop max 1
is disjoint with
NCBI SRA meta information standardc, NCBI Antibiogram standardc, NCBI BioSample Pathogen.cl standardc

NCBI BioSample collection codec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001706

has super-classes
collection identifierc

NCBI BioSample culture identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001798

has super-classes
culture identifierc

NCBI BioSample isolate (human name or description)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001051

has super-classes
i a o 0000300

NCBI BioSample Pathogen.cl standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001835

has super-classes
NCBI standardc
is aboutop some o b i 0100051
is disjoint with
NCBI SRA meta information standardc, NCBI Antibiogram standardc, NCBI BioProject standardc

NCBI Contributing organization / projectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001648

has super-classes
organization identifierc

NCBI culture collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001721

has super-classes
culture identifierc

NCBI pathotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001055

has super-classes
i a o 0000300

NCBI specimen voucherc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001722

has super-classes
o b i 0001616

NCBI SRA meta information standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000147

has super-classes
NCBI standardc
is disjoint with
NCBI Antibiogram standardc, NCBI BioSample Pathogen.cl standardc, NCBI BioProject standardc

NCBI standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000115

has super-classes
n c i t c103180c
has sub-classes
Environmental Pathogen Attribute Package (Pathogen.env)c, NCBI Antibiogram standardc, NCBI BioProject standardc, NCBI BioSample Pathogen.cl standardc, NCBI SRA meta information standardc

NCITc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001819

has super-classes
source databasec

necropsyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MMO_0000344

has super-classes
o b i 0600005

neuterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001660

Not a PATO phenotypic sex catigorical value.
has super-classes
p a t o 0001894c
is disjoint with
p a t o 0000383c, p a t o 0000384c

NHS standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001845

has super-classes
n c i t c103180c

NIFSTDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001820

has super-classes
source databasec

nitrate concentrationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000040

has super-classes
environmental datumc

nitrite concentrationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000039

has super-classes
environmental datumc

non-monocytogenes listeria antigenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001702

has super-classes
listeria antigenc

not applicablec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001619

has super-classes
datum statusc

not collectedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001620

has super-classes
missingc

not providedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001668

has super-classes
missingc

notec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000131

has super-classes
i a o 0000300

notification datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001494

has super-classes
outbreak history itemc

number of expected base pairs per genomec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000086

has super-classes
assembly quality control datumc

number of passagesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002078

has super-classes
isolate passage history datumc
s t a t o 0000047

number of reads passing filterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000087

has super-classes
assembly quality control datumc

o a e 0002678c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OAE_0002678

has super-classes
outcome of pregnancy associated with illnessc

O antigenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001076

has super-classes
o b i 1110034

o b i 0000626c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000626

has super-classes
e r o 0001286c
has sub-classes
e r o 0001183c

o b i 0001889c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001889

has super-classes
n c i t c25190c

o b i 0001891c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001891

o b i 0001892c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001892

has sub-classes
analysis objectivec, assembly objectivec, epigenetic markers objectivec, mapping objectivec, other project objectivec, phenotype project objectivec, raw sequence read objectivec, sequence annotation objectivec, sequence project objectivec, sequence variation project objectivec, transcript or protein expression objectivec

o b i 0001941c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001941

has super-classes
contig lengthc

o b i 0002825c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002825

has super-classes
awaiting ontology reviewc

o b i 0002826c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002826

has super-classes
awaiting ontology reviewc

o b i 0002827c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002827

has super-classes
awaiting ontology reviewc

o b i 0002831c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002831

has super-classes
awaiting ontology reviewc

o b i 0002858c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002858

has super-classes
awaiting ontology reviewc

o b i 0002859c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002859

has super-classes
awaiting ontology reviewc

o b i 0002860c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002860

has super-classes
awaiting ontology reviewc

o b i 0002861c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002861

has super-classes
awaiting ontology reviewc

o b i 0002862c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002862

has super-classes
awaiting ontology reviewc

o b i 0002866c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002866

has super-classes
awaiting ontology reviewc

o m i a b i s 0001008c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0001008

has super-classes
diagnosisc

o m i t 0001642c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIT_0001642

has super-classes
health status history datumc
o m i t 0020789c

o m i t 0004227c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIT_0004227

has super-classes
subject disease outcomec
health status history datumc
o m i t 0020789c

o m i t 0006951c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIT_0006951

has super-classes
o b i 0600044

o m i t 0012935c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIT_0012935

has super-classes
health status history datumc
o m i t 0020789c

o m i t 0013001c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIT_0013001

has super-classes
health status history datumc
o m i t 0020789c

o m i t 0017096c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIT_0017096

has super-classes
o m i t 0020789c

o m i t 0020789c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIT_0020789

has super-classes
b f o 0000019
has sub-classes
o m i t 0001642c, o m i t 0004227c, o m i t 0012935c, o m i t 0013001c, o m i t 0017096c

o m i t 0021725c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIT_0021725

has super-classes
p r 000000001
has sub-classes
n c i t c1225c

o m i t 0027406c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIT_0027406

has super-classes
test specificationc

o m i t 0027578c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIT_0027578

has super-classes
o b i 0600005

o m p 0000207c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000207

has super-classes
test specificationc
is aboutop some n c i t c53471c
has sub-classes
Salmonella serovarc

obsolete distribution eventc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001163

obsolete supply point / eventc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001164

obsolete: agar dilution evidencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002046

obsolete: ancestral groupc back to ToC or Class ToC

IRI: http://www.ebi.ac.uk/ancestro/ancestro_0004

obsolete: antibioticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_22582

obsolete: antibiotic intermediate resistance (I)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002038

obsolete: antibiotic nonsensitive (high resistance)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002039

obsolete: antibiotic resistant (R)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002041

obsolete: antibiotic sensitive (S)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002042

obsolete: antimicrobial resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002037

obsolete: antimicrobial resistance phenotype - epidemiological cut-off valuesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002181

obsolete: antimicrobial resistance testing methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002045

obsolete: antimicrobial resistance testing platformc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002049

obsolete: antimicrobial resistance testing platform vendorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002056

obsolete: antimicrobial resistance testing reference standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002062

obsolete: antimicrobial resistance tissue specificityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002102

obsolete: baby showerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001032

obsolete: bakeryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001017

obsolete: Becton Dickinsonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002059

obsolete: Biomérieuxc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002058

obsolete: British Society for Antimicrobial Chemotherapy (BSAC)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002063

obsolete: cafeteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001016

obsolete: categorical tree specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001655

A categorical tree specification datum may have its own URI identifier as its value. This could be interpreted to mean that the datum was recorded but that no particular categorical subclass distinction was observed. This in effect makes the datum act as a boolean variable.

obsolete: Clinical and Laboratory Standards Institute (CLSI)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002064

On January 1, 2005 the National Committee on Clinical Laboratory Standards (NCCLS) changed its name to CLSI

obsolete: community eventc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001034

obsolete: delicatessenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001018

obsolete: draft GenEpiO BioProject standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001705

obsolete: draft GenEpiO BioSample standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000015

obsolete: draft IRIDA modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001680

obsolete: drag swabc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002713

obsolete: drug minimum inhibitory concentration unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002080

obsolete: E. coli serotype partc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001075

obsolete: earth surfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001338

obsolete: environmental (swab or sampling)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001732

obsolete: European Committe on Antimicrobial Susceptibility Testing (EUCAST)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002066

obsolete: field specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002178

Date :
17T23:04:53Z/04/2019
has super-classes
o b i 0000658
is disjoint with
draft data standardc, data specificationc, n c i t c103180c

obsolete: fluid - aspiratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001262

obsolete: food cooking methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001227

obsolete: food kioskc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001019

obsolete: food preservation methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001228

obsolete: German Institute for Standardization (DIN)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002065

obsolete: gestation duration (weeks)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001672

obsolete: grocery storec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001020

obsolete: GSCID-BRC data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000077

obsolete: HIPPA PHI data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000107

obsolete: host sample materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001240

obsolete: hot tubc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001015

obsolete: household exposurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001552

obsolete: human exposure activity typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001273

obsolete: INSDC MDM standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000104

obsolete: intersexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000019

obsolete: isolation datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000020

obsolete: laboratory sequencing datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001422

obsolete: long term care facilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001035

obsolete: manual - noncommercialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002055

obsolete: marketc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001022

obsolete: matrix - fluidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001690

obsolete: matrix - solidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001675

obsolete: Microscanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002050

obsolete: millisiemensc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001758

obsolete: MIxS data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000105

obsolete: motherc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001208

obsolete: National Committee on Clinical Laboratory Standards (NCCLS)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002067

obsolete: NCBI antibiogram data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000016

obsolete: NCBI Antibiogram modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001099

obsolete: NCBI BioProject data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000103

obsolete: NCBI BioProject IDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001535

obsolete: NCBI BioProject modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001579

obsolete: NCBI BioSample attribute packagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001239

obsolete: NCBI BioSample data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000097

obsolete: NCBI BioSample ID -c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001807

obsolete: NCBI isolate AMR testing modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001008

obsolete: NCBI SRA modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001580

obsolete: non-wild type (NWT)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002099

obsolete: ordinal variablec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002027

obsolete: partyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001030

obsolete: petting zooc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001052

obsolete: Phoenixc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002051

obsolete: potluckc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001033

obsolete: PulseNet data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000108

obsolete: restaurantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001009

obsolete: sample body sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001629

obsolete: sample cityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001786

obsolete: sample datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001421

obsolete: Sensititrec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002052

obsolete: sensitive - dose dependentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002043

obsolete: sequencing assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000074

obsolete: Siemensc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002057

obsolete: SIRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002069

obsolete: social gatheringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001029

obsolete: Société Française de Microbiologie (SFM)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002068

obsolete: specialty/ethnic storec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001021

obsolete: specimen collection devicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002094

obsolete: specimen from subject datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001635

obsolete: specimen source environmental materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000030

obsolete: specimen source material categoryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001637

obsolete: subject speciesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000018

obsolete: surface wipec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0003358

obsolete: swabc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001260

obsolete: swab - food contact surfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001720

obsolete: swab - inanimate object surfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001726

obsolete: swab - meatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001727

obsolete: swab - rectal swabc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001728

obsolete: swab - tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001729

obsolete: take out restaurantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001024

obsolete: Trekc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002054

obsolete: type of illnessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001193

obsolete: US postal codec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001890

obsolete: Vitekc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002053

obsolete: weddingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001031

obsolete: wild type (WT)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002098

obsolete: WRGc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002070

ordinal value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002031

An ordinal tree specification is a value specification entity whose subclasses each represent a possible value selection, and which have a linear order with respect to their siblings.
has super-classes
o b i 0001930

organism datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001170

has super-classes
i a o 0000027
is aboutop some o b i 0100026
has sub-classes
Mycobacterium tuberculosis lineagec, Salmonella subspeciesc, ancestral groupc, country of birthc, e f o 0004324c, ex o 0000038c, health status history datumc, health status trend datumc, host hospital service statusc, human exposure event - travel datumc, n c i t c106561c, n c i t c124295c, n c i t c25717c, specimen with confirmed presence of disease agentc, subject age - unitc, subject health status (AHA)c, subject health status (GSCID-BRC)c, subject health status (NCIT)c, subject health status (UK NHS)c

organism location history datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001041

has super-classes
i a o 0000416
has sub-classes
immigration year of arrivalc, travel history itemc

organism rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001171

has super-classes
b f o 0000023
inheres inop some o b i 0100026
has sub-classes
animal rolec, isolate organism rolec, plant rolec

organization identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001803

has super-classes
i a o 0000577
has sub-classes
INSDC institution codec, NCBI Contributing organization / projectc

organs or organ partsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001117

Date :
19T23:36:25Z/04/2021
has super-classes
b f o 0000027
(has memberop some part ofop some u b e r o n 0000062) and (has memberop only part ofop some u b e r o n 0000062)

original submissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001647

has super-classes
identifier statusc

other (metadata value)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000009

has super-classes
i a o 0000027

other antigen specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001685

has super-classes
string value specificationc
o b i 0001927 some c h e b i 59132
o b i 0002135dp exactly 1

other capture typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000013

has super-classes
o b i 0001899

other human exposurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001554

has super-classes
human to human exposure processc

other library methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001964

has super-classes
library selectionc

other library sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001969

has super-classes
library sourcec

other library strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001988

has super-classes
library strategyc

other material derived from specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000012

has super-classes
o b i 0001882

other project data typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001106

has super-classes
project data typec

other project methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000014

has super-classes
o b i 0001896

other project objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001588

has super-classes
o b i 0001892c

other relevancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000010

has super-classes
project relevancec

other specimen scopec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000011

has super-classes
o b i 0001884

outbreak animal exposure event locationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001269

has super-classes
awaiting ontology reviewc

outbreak datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001495

has super-classes
outbreak history itemc

outbreak exposure event locationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001297

has super-classes
investigative subjectc
has sub-classes
outbreak human exposure event locationc

outbreak history itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001492

An outbreak date may have an official start, but because it might be ongoing, it may not have an end (yet).
has super-classes
i a o 0000416
has sub-classes
notification datec, outbreak datec, outbreak overc

outbreak history recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001466

An outbreak date may have an official start, but because it might be ongoing, it may not have an end (yet).
has super-classes
draft GenEpiO component recordc

outbreak human exposure event locationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001274

has super-classes
outbreak exposure event locationc
has sub-classes
e n v o 00002173c, e n v o 00002222c

outbreak identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001559

has super-classes
i a o 0000577

outbreak overc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001496

has super-classes
outbreak history itemc
afterop some outbreak datec

outcome of pregnancy associated with illnessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001667

has super-classes
awaiting ontology reviewc
has sub-classes
induced abortionc, live birthc, o a e 0002678c, x c o 0000412c

p a t o 0000146c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000146

Damion's Note: Future use might prefer: CMO_0000015 body temperature.

p a t o 0000383c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000383

has sub-classes
n c i t c54014c
is disjoint with
neuterc

p a t o 0000384c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000384

is disjoint with
neuterc

p a t o 0001894c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001894

has sub-classes
n c i t c45908c, neuterc, pooled male and femalec

p c o 0000033c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000033

has super-classes
human general activityc
has sub-classes
agricultural fairc

p o 0009011c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PO_0009011

has super-classes
subject anatomical sitec

PacBio platformc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001927

has super-classes
sequencing platform (brand)c

parent-guardian rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001541

has super-classes
person rolec

passage protocolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002079

has super-classes
isolate passage history datumc
s i o 000136

pathogen rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000718

has super-classes
isolate organism rolec

pathogen specific data standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001776

has super-classes
public health lab epidemiology contextual data standardc

patient as host datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001222

has super-classes
personal health datumc
is aboutop some i d o 0000531c
has sub-classes
infection detail datumc, infectious disease treatmentc

patient specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001245

has super-classes
human clinical specimenc

patient typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001206

has super-classes
n c i t c25190c
has sub-classes
n c i t c16731c, n c i t c25189c, pregnant womanc

PCR methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001955

has super-classes
library selectionc

permissible valuec back to ToC or Class ToC

IRI: https://w3id.org/linkml/PermissibleValue

has super-classes
elementc

person rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001537

is equivalent to
animal rolec and (inheres inop some n c b i taxon 9606)
has super-classes
animal rolec
has sub-classes
experimental subject rolec, exposed person rolec, parent-guardian rolec, physician rolec

personal health datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002018

has super-classes
i a o 0000027
has sub-classes
host health complications at time of specimen collectionc, host role at time of specimen collectionc, patient as host datumc, pre-existing conditions and risk factors at time of specimen collectionc, signs and symptoms at time of specimen collectionc, subject disease outcomec, subject disease stagec, subject health status at time of specimen collectionc

pet food (raw)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001057

has super-classes
animal exposure event by materialc

pet treatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001056

has super-classes
animal exposure event by materialc

PFGE Blnl patternc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001780

has super-classes
PFGE patternc
is aboutop some Blnlc

PFGE patternc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001289

has super-classes
test specificationc
is aboutop some n c i t c53471c
has sub-classes
PFGE Blnl patternc, PFGE Spel patternc, PFGE Xbal patternc

PFGE primary testc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000046

has super-classes
PFGE test specificationc

PFGE secondary testc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000048

has super-classes
PFGE test specificationc

PFGE Spel patternc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002231

Date :
25T09:07:26Z/11/2019
has super-classes
PFGE patternc

PFGE test specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000045

has super-classes
test specificationc
has componentop max 1 PFGE primary testc
has componentop max 1 PFGE secondary testc
has sub-classes
PFGE primary testc, PFGE secondary testc

PFGE Xbal patternc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001779

has super-classes
PFGE patternc
is aboutop some Xbalc

pH measurementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001736

Normally falls within the bounds of 0 - 14
has super-classes
environmental datumc

phage type e-coli 0157 (PT)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001292

has super-classes
test specificationc

phage type salmonella (DT)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001291

has super-classes
test specificationc

phage type specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001719

has super-classes
test specificationc

phenotype or genotype projectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001107

has super-classes
project data typec

phenotype project objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001114

has super-classes
o b i 0001892c

phenotypic antimicrobial drug susceptibility test datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002036

has super-classes
i a o 0000027
has sub-classes
antimicrobial resistant plasmid typec, test threshold measurement comparatorc

phenotypic observation data from specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001601

has super-classes
o b i 0001882

phred quality scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000089

has super-classes
assembly quality control datumc

physician rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000013

has super-classes
person rolec

plant productc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002016

has super-classes
subject body productc
has sub-classes
f o o d o n 03411347c

plant rinsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001267

is equivalent to
plant productc and rinsec
has super-classes
rinsec

plant rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001182

is equivalent to
organism rolec and (inheres inop some n c b i taxon 33090)
has super-classes
organism rolec

pool clone strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001989

has super-classes
library strategyc

pool waterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001014

has super-classes
treated water - ambient temperaturec

pooled male and femalec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001661

is equivalent to
p a t o 0000383c or p a t o 0000384c
has super-classes
p a t o 0001894c

pre-existing conditionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001548

has super-classes
illness causalityc

pre-existing conditions and risk factors at time of specimen collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0100290

Date :
31T23:52:41Z/01/2022
has super-classes
personal health datumc
is aboutop some pre-existing conditionc
is aboutop some o b i 0001619

precipitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001737

has super-classes
environmental datumc

predicted exposure endc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001102

has super-classes
exposure history itemc

predicted exposure startc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001101

has super-classes
exposure history itemc

pregnancy history itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001224

has super-classes
i a o 0000416
has sub-classes
date of conceptionc, date of pregnancy outcomec, n c i t c68615c

pregnancy history recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001467

Needs to cover the various pregnancy events
has super-classes
draft GenEpiO component recordc

pregnant womanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000288

Date :
24T22:38:17Z/04/2020
has super-classes
patient typec

previous (archaic) identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001653

has super-classes
identifier statusc

primary enzyme (LMAAI)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000044

has super-classes
lab test datumc
has sub-classes
Asclc, Smalc, Xbalc

progressing well health statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001848

has super-classes
ex o 0000038c
subject health status (UK NHS)c
afterop some comfortable health statusc
r o 0002083op some good health statusc

project data typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000156

Damion Dooley's note: According to http://trace.ddbj.nig.ac.jp/news/2014-11-12_e.html, "A BioProject record can have multiple project data types"
has super-classes
i a o 0000104
has sub-classes
assembly projectc, clone ends projectc, epigenomics projectc, exome resequencing projectc, genome sequencing projectc, map projectc, metagenome assembly projectc, metagenome projectc, other project data typec, phenotype or genotype projectc, proteome projectc, random survey projectc, targeted locus (loci) projectc, transcriptome or gene expressionc, variation projectc

project relevancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001572

has super-classes
i a o 0000005
has sub-classes
agricultural project relevancec, environmental project relevancec, evolution modelling relevancec, industrial processing relevancec, medical knowledge relevancec, model organism relevancec, other relevancec

proteome data derived from specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001749

has super-classes
o b i 0001882

proteome projectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001108

has super-classes
project data typec

public health data standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001743

has super-classes
n c i t c103180c
has sub-classes
AHA HIPPA standardc, American HIPPA Protected Health Information (PHI) guidelinesc, Canadian Integrated Public Health Information System (iPHIS) Standardc, PulseNet submission standardc, public health lab epidemiology contextual data standardc

public health lab epidemiology contextual data standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000143

has super-classes
public health data standardc
has sub-classes
pathogen specific data standardc

PubMedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001838

has super-classes
source databasec

PulseNet Canada fieldc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002185

Date :
17T23:41:35Z/04/2019
has super-classes
o b i 0000658
has sub-classes
PulseNet Canada Salmonella fieldc
has members
PulseNet:FoodNetni, PulseNet:IsolatDateni, PulseNet:LabIDni, PulseNet:ListMemberni, PulseNet:NARMS-EBni, PulseNet:OtherStateIsolateni, PulseNet:Outbreakni, PulseNet:PatientAgeni, PulseNet:PatientSexni, PulseNet:Phagetypeni, PulseNet:ReceivedDateni, PulseNet:SourceCityni, PulseNet:SourceCountryni, PulseNet:SourceSiteni, PulseNet:SourceStateni, PulseNet:SourceTypeni, PulseNet:Statusni, PulseNet:SubmittedNumberni, PulseNet:TEMPni, PulseNet:TypeDetailsni, PulseNet:UploadDateni, PulseNet:UploadModifiedDateni, PulseNet:cdc_idni

PulseNet Canada Salmonella fieldc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002186

Date :
17T23:41:56Z/04/2019
has super-classes
PulseNet Canada fieldc
has members
PulseNet:AntigenFormni, PulseNet:OGroupni, PulseNet:PFGE-BlnI-fileni, PulseNet:PFGE-BlnI-patternni, PulseNet:PFGE-BlnI-rundateni, PulseNet:PFGE-BlnI-statusni, PulseNet:PFGE-SpeI-fileni, PulseNet:PFGE-SpeI-patternni, PulseNet:PFGE-SpeI-rundateni, PulseNet:PFGE-SpeI-statusni, PulseNet:PFGE-XbaI-fileni, PulseNet:PFGE-XbaI-patternni, PulseNet:PFGE-XbaI-rundateni, PulseNet:PFGE-XbaI-statusni, PulseNet:Serotypeni, PulseNet:Subspeciesni, PulseNet:Traveled_Toni

PulseNet submission standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001839

has super-classes
public health data standardc

purified chromosome from specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001750

has super-classes
o b i 0001882

Qualicon (DuPont) RiboPrinter Microbial Characterization Systemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000065

has super-classes
o b i 0000968

quality control recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001764

has super-classes
draft GenEpiO component recordc

RACE methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001956

has super-classes
library selectionc

RANDOM methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001958

has super-classes
library selectionc

RANDOM PCR methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001957

has super-classes
library selectionc

random survey data capturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001754

has super-classes
o b i 0001899

random survey projectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001109

has super-classes
project data typec

raw sequence data processing datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002139

has super-classes
data specificationc

raw sequence read objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001592

has super-classes
o b i 0001892c

read adapter trimmingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000084

has super-classes
laboratory sequencing datumc

read adapter trimming softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002096

has super-classes
laboratory sequencing datumc

read coveragec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000092

Damion Dooley's note: Wikipedia defines calculation with: "the length of the original genome (G), the number of reads(N), and the average read length(L) as N * L/G"
has super-classes
assembly quality control datumc

read lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000076

has super-classes
laboratory sequencing datumc

read paired-end merging softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002095

has super-classes
laboratory sequencing datumc

read trimming and filtering softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000150

has super-classes
laboratory sequencing datumc

reagent derived material from specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001747

has super-classes
o b i 0001882

recordedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001851

In theory any datum that has a recorded value has 'recorded' for its datum status.
has super-classes
datum statusc

recreational drug use statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001090

has super-classes
behavioural risk factorc

Reduced Representation methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001960

has super-classes
library selectionc

reference genome identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001562

has super-classes
sequencing assembly datumc
sequence identifierc
is aboutop some s o 0001505c

reference genome sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001560

has super-classes
sequencing assembly datumc
s t a t o 0000047
i a o 0000039op some u o 0000244
is aboutop some s o 0001505c

RefSeq accession identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002074

has super-classes
sequence accessionc

Region (England) (entry subject to GAZ replacement)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000141

has super-classes
subnational regionc
has sub-classes
g a z 00003670c, g a z 00003671c, g a z 00003687c, g a z 00003688c, g a z 00003689c, g a z 00003690c, g a z 00003691c, g a z 00003692c, g a z 00003693c

region, province, state or territory specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002161

has super-classes
o b i 0001930
o b i 0001927 some subnational regionc or n c i t c25632c or n c i t c87194 or n c i t c89811c

religious missionairy activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001068

has super-classes
travel reasonc

resolving health trendc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001550

has super-classes
health status trend datumc
afterop some stable health trendc

restricted accessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001810

has super-classes
missingc

Restriction Digest methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001961

has super-classes
library selectionc

RiboPrinter DUP Numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000067

has super-classes
i a o 0000109

RiboPrinter DUP similarityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000068

has super-classes
i a o 0000109

riboprintingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000064

has super-classes
diagnostic testc

ribotypingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000063

has super-classes
diagnostic testc

rinsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002749

Date :
28T20:07:25Z/06/2019
is equivalent to
output of some rinsing for specimen collectionc
has super-classes
o b i 0100051
has sub-classes
animal rinsec, plant rinsec

rinsing for specimen collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002116

has super-classes
o b i 0600005

RNA-Seq strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001990

has super-classes
library strategyc

Roche LS454 platformc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001926

has super-classes
sequencing platform (brand)c

RT-PCR methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001959

has super-classes
library selectionc

rural backpacking activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001069

has super-classes
travel for pleasurec

s i o 000507c back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_000507

has super-classes
g e n e p i o 0001744
has sub-classes
centre pointc

s i o 000666c back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_000666

has super-classes
e n v o 01000658
n c i t c80234c

s i o 000811c back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_000811

has super-classes
i a o 0000577

s i o 000964c back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_000964

has super-classes
s i o 000136

s i o 001322c back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_001322

has super-classes
i a o 0000577

s o 0000353c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/SO_0000353

has super-classes
sequencing assembly datumc
is aboutop some o b i 0100026
has componentop exactly 1 s o 0001462c

s o 0001026c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/SO_0001026

has super-classes
b f o 0000027

s o 0001260c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/SO_0001260

has super-classes
b f o 0000027

s o 0001462c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/SO_0001462

has super-classes
has memberop some s o 0000149

s o 0001505c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/SO_0001505

s t a t o 0000013c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000013

has super-classes
g e n e p i o 0001865

s t a t o 0000015c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000015

has super-classes
g e n e p i o 0001866

s t a t o 0000016c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000016

has super-classes
g e n e p i o 0001867

s t a t o 0000022c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000022

has super-classes
g e n e p i o 0001864

s t a t o 0000024c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000024

has super-classes
g e n e p i o 0001866

s t a t o 0000069c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000069

has super-classes
s t a t o 0000047

s t a t o 0000087c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000087

has super-classes
s t a t o 0000252c
has sub-classes
s t a t o 0000090c

s t a t o 0000090c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000090

has super-classes
s t a t o 0000087c

s t a t o 0000190c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000190

has super-classes
s t a t o 0000232c

s t a t o 0000221c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000221

has super-classes
s t a t o 0000258c

s t a t o 0000228c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000228

has super-classes
s t a t o 0000252c

s t a t o 0000232c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000232

has super-classes
s t a t o 0000047
has sub-classes
s t a t o 0000190c

s t a t o 0000251c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000251

has super-classes
s t a t o 0000258c

s t a t o 0000252c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000252

has super-classes
s t a t o 0000258c
has sub-classes
s t a t o 0000087c, s t a t o 0000228c

s t a t o 0000258c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000258

has super-classes
i a o 0000030
has sub-classes
s t a t o 0000221c, s t a t o 0000251c, s t a t o 0000252c

s y m p 0000092c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/SYMP_0000092

has super-classes
a r o 3004430

s y m p 0000462c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/SYMP_0000462

has super-classes
b f o 0000019

Salmonella antigenic formulac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001082

has super-classes
antigenic formulac
is aboutop some n c b i taxon 590

Salmonella serovarc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001080

has super-classes
o m p 0000207c
is aboutop some n c b i taxon 590

Salmonella serovar namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001081

has super-classes
serovar/serotype common namec

Salmonella serovar specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001687

Damion's note: This will be converted to a categorical tree specification list of serovars by name or id asap.
has super-classes
serotype specificationc

Salmonella subspeciesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002230

Date :
25T08:45:41Z/11/2019
has super-classes
organism datumc

satisfactory health statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002023

has super-classes
ex o 0000038c
subject health status (UK NHS)c
afterop some fair health statusc
r o 0002083op some comfortable health statusc

schema definitionc back to ToC or Class ToC

IRI: https://w3id.org/linkml/SchemaDefinition

has super-classes
definitionc

second line or reserve tuberculosis drugc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001097

has super-classes
tuberculosis treatment drugc
has sub-classes
c h e b i 4885c, c h e b i 63607c, c h e b i 63611c, c h e b i 7731c

secondary enzyme (LMACI)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000047

has super-classes
lab test datumc
has sub-classes
Apalc, Blnlc, Kpnlc

sequence accessionc back to ToC or Class ToC

IRI: http://edamontology.org/data_1093

has super-classes
sequence identifierc
has sub-classes
RefSeq accession identifierc

sequence annotation objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001596

has super-classes
o b i 0001892c

sequence identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001800

has super-classes
i a o 0000577
has sub-classes
reference genome identifierc, sequence accessionc

sequence numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001095

has super-classes
laboratory sequencing datumc

sequence project objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001593

has super-classes
o b i 0001892c

sequence recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001293

has super-classes
draft GenEpiO component recordc

sequence variation project objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001597

has super-classes
o b i 0001892c

sequencer flow cell cluster densityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000088

has super-classes
laboratory sequencing datumc

sequencing applicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000073

has super-classes
laboratory sequencing datumc

sequencing assembly datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001425

has super-classes
laboratory sequencing datumc
is aboutop some n c i t c53471c
has sub-classes
assembly and annotation project objectivec, assembly methodc, assembly name (identifier)c, assembly quality control datumc, reference genome identifierc, reference genome sizec, s o 0000353c

sequencing chemistryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000075

has super-classes
laboratory sequencing datumc

sequencing count of chemistry cyclesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000080

has super-classes
laboratory sequencing datumc

sequencing dna extraction method datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002093

has super-classes
laboratory sequencing datumc

sequencing facility name specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002147

has super-classes
string value specificationc
o b i 0001927 some o b i 0001891c

sequencing instrument modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001921

has super-classes
o b i 0000832
has sub-classes
454 Genome Sequencerc

sequencing kitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000081

has super-classes
o b i 0000047

sequencing kit versionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000082

has super-classes
laboratory sequencing datumc

sequencing locationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000070

has super-classes
laboratory sequencing datumc

sequencing platform (brand)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000071

has super-classes
i a o 0000027
has sub-classes
BGI Genomics platformc, Complete Genomics platformc, Helicos platformc, Illumina platformc, Ion Torrent platformc, MGI platformc, PacBio platformc, Roche LS454 platformc, SOLiD sequening platformc

sequencing project methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001602

has super-classes
o b i 0001896

sequencing run datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000069

has super-classes
isolate history itemc
laboratory sequencing datumc
afterop some culture isolation datec

sequencing run multiplex identifiersc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000078

has super-classes
laboratory sequencing datumc

sequencing run sample identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000079

has super-classes
i a o 0000577

sequencing workflowc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000072

has super-classes
laboratory sequencing datumc

serious health statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001842

has super-classes
ex o 0000038c
subject health status (AHA)c
afterop some critical but stable health statusc
r o 0002083op some stable health statusc

serotype specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001718

has super-classes
test specificationc
has componentop max 1 E. coli serotype specificationc
has componentop max 1 Salmonella serovar specificationc
has sub-classes
E. coli serotype specificationc, Salmonella serovar specificationc

serovar/serotype common namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001079

has super-classes
test specificationc
has sub-classes
Salmonella serovar namec

sexual contact exposurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001555

has super-classes
exposure by human contactc

Shiga toxin 1c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIT_0020917

has super-classes
n c i t c1225c

Shiga toxin 2c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIT_0020918

has super-classes
n c i t c1225c

signs and symptomsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001523

Date :
31T23:08:50Z/01/2022
has super-classes
analytic datumc

signs and symptoms at time of specimen collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0100291

Date :
31T23:53:13Z/01/2022
has super-classes
personal health datumc
is aboutop some signs and symptomsc
is aboutop some o b i 0001619

single cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001587

has super-classes
o b i 0001884

size fractionation methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001963

has super-classes
library selectionc

slot definitionc back to ToC or Class ToC

IRI: https://w3id.org/linkml/SlotDefinition

has super-classes
definitionc

Smalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001712

has super-classes
primary enzyme (LMAAI)c

smoking statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001093

has super-classes
behavioural risk factorc

SNOMEDCTc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001821

has super-classes
source databasec

SOLiD 4hq Systemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001928

has super-classes
o b i 0000696

SOLiD 5500c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001929

has super-classes
o b i 0000696

SOLiD 5500xlc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001930

has super-classes
o b i 0000696

SOLiD PI Systemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001931

has super-classes
o b i 0000696

SOLiD sequening platformc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002684

Date :
24T22:55:31Z/04/2020
has super-classes
sequencing platform (brand)c

SOLiD System 2.0c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001932

has super-classes
o b i 0000696

SOLiD System 3.0c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001933

has super-classes
o b i 0000696

soluble inorganic materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000037

has super-classes
test specificationc

soluble inorganic material concentrationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000038

has super-classes
environmental datumc

source databasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MI_0489

Damion Dooley's note: GenEpiO is using members of this class for the first part of the hasDbXref relation. This is where we are keeping the mapping between a code and its source database. Depending on its context, hasDbXref annotations may point directly to metadata field names in the target database, and may be annotated with additional information that guides any additional specifications that impact on data conversion of these fields.
has super-classes
i a o 0000577
has sub-classes
ASFISc, EcoLexiconc, FTTc, GNISIDc, Geonamesc, ITISc, LTERc, MESHc, NCITc, NIFSTDc, PubMedc, SNOMEDCTc, SWEETRealmc, TGNc, Wikipediac

spa waterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001220

has super-classes
treated water - warm/hotc

special dietc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001043

has super-classes
dietary restrictionc

species of pathogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001788

has super-classes
taxonomic datumc
is aboutop some n c b i taxon speciesc

specimen categoryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000113

has super-classes
specimen datumc
has sub-classes
clinical or host-associated pathogenc, environmental, food or other pathogenc

specimen collection date (ISO 8601)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002154

The date on which a specimen was collected, in ISO 8601 format.
has super-classes
date value specification (ISO 8601)c
o b i 0001927 some o b i 0001619

specimen collection location - cityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001785

has super-classes
specimen collection site specificationc
o b i 0001927 some n c i t c80234c

specimen collection location - city or regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000117

has super-classes
specimen collection site specificationc
o b i 0001927 some e n v o 00000005c or n c i t c80234c

specimen collection location - countryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000118

has super-classes
specimen collection site specificationc
o b i 0001927 some n c i t c25464c

specimen collection location - state/province/territory/regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002097

has super-classes
specimen collection site specificationc
o b i 0001927 some subnational regionc or n c i t c25632c or n c i t c87194 or n c i t c89811c

specimen collection servicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002222

Date :
03T02:44:38Z/05/2019
has super-classes
specimen related servicec

specimen collection sitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002167

has super-classes
g e n e p i o 0001886
e n v o 00000005c or n c i t c25464c or n c i t c80234c
has sub-classes
n c i t c87913c

specimen collection site - geographic featurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002076

has super-classes
data specificationc

specimen collection site land usec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000032

has super-classes
environmental datumc

specimen collection site specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002162

has super-classes
o b i 0001930
o b i 0001927 some s i o 000415
has sub-classes
specimen collection location - cityc, specimen collection location - city or regionc, specimen collection location - countryc, specimen collection location - state/province/territory/regionc

specimen collectorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001797

has super-classes
specimen datumc
has componentop max 1
has componentop max 1

specimen datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001790

has super-classes
i a o 0000027
is aboutop some o b i 0100051
has sub-classes
EBI ENA Webin environmental featurec, food specimen datumc, specimen categoryc, specimen collectorc, specimen history itemc, specimen source contextc, specimen titlec

specimen from organism specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002175

has super-classes
data specificationc
is aboutop some o b i 0001479

specimen history itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001356

has super-classes
specimen datumc
i a o 0000416

specimen identifier specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002159

has super-classes
string value specificationc
o b i 0001927 some o b i 0001616

specimen organism taxonomy (species)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001640

has super-classes
o b i 0001930
o b i 0001927 some n c b i taxon 10239 or n c b i taxon 2 or n c b i taxon 2157 or n c b i taxon 2759

specimen processing organization typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002105

has super-classes
o b i 0000245c

specimen recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001236

has super-classes
draft GenEpiO component recordc

specimen related servicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002225

Date :
03T02:52:19Z/05/2019
has super-classes
o b i 0001173
has sub-classes
bioinformatics analysis servicec, isolate preparation servicec, specimen collection servicec, specimen repository/biobank servicec

specimen repository/biobank servicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002226

Date :
03T03:24:33Z/05/2019
has super-classes
specimen related servicec

specimen source contextc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000027

has super-classes
specimen datumc
has componentop max 1 specimen source substance specificationc
has componentop max 1

specimen source material categoryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001237

has super-classes
c h m o 0000993c
has sub-classes
animal specimenc, environmental specimenc, human clinical specimenc

specimen source substancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000134

is equivalent to
e n v o 00010483c or food specimenc or subject organismc
has super-classes
b f o 0000040
located inop some specimen collection sitec

specimen source substance specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002174

has super-classes
data specificationc
is aboutop some specimen source substancec

specimen strain or isolate identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002140

has super-classes
data specificationc

specimen titlec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001808

has super-classes
specimen datumc

specimen with confirmed presence of disease agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001196

has super-classes
organism datumc

spoonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002123

has super-classes
n c i t c43167c

spray-wading waterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001013

has super-classes
treated water - ambient temperaturec

sputum collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002115

has super-classes
o b i 0600005

stable health statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001669

has super-classes
subject health status (UK NHS)c
afterop some serious health statusc
r o 0002083op some fair health statusc

stable health trendc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002026

has super-classes
health status trend datumc
afterop some worsening health trendc
r o 0002083op some resolving health trendc

State (United States of America)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001811

has super-classes
n c i t c87194

State or Province or Territoryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0100634

Date :
22T22:56:03.687Z/12/2022
Contributors :
http://orcid.org/0000-0002-9578-0788
is equivalent to
n c i t c25632c or n c i t c87194 or n c i t c89811c
has super-classes
n c i t c16632c

strain identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001429

has super-classes
i a o 0000577
is aboutop some n c i t c14419c
has sub-classes
g e n e p i o 0000101c

strain identifier specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002149

has super-classes
string value specificationc
o b i 0001927 some strain identifierc

stream order categorical measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000042

has super-classes
environmental datumc
o b i 0002135dp some

string value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002468

has super-classes
o b i 0001933
o b i 0002135dp exactly 1
has sub-classes
E. coli H antigen specificationc, E. coli K antigen specificationc, E. coli O antigen specificationc, INSDC country qualifierc, URL specificationc, email address specificationc, investigation identifier specificationc, isolate identifier specificationc, listeria antigen specificationc, other antigen specificationc, sequencing facility name specificationc, specimen identifier specificationc, strain identifier specificationc, subject identifier specificationc, subject organism common name specificationc
is in range of
obsolete: has string value specificationop

Stx toxin subtype datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000055

has super-classes
i a o 0000109
is aboutop some n c i t c1225c

Stx toxin type datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000054

has super-classes
i a o 0000109
is aboutop some n c i t c1225c

Stx1 cell culture levelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000057

has super-classes
i a o 0000109
is aboutop some Shiga toxin 1c

Stx1 Toxin PCR resultc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000056

has super-classes
i a o 0000109
is aboutop some Shiga toxin 1c

Stx2 cell culture levelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000059

has super-classes
i a o 0000109
is aboutop some Shiga toxin 2c

Stx2 Toxin PCR resultc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000058

has super-classes
i a o 0000109
is aboutop some Shiga toxin 2c

subgroupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001716

has super-classes
test specificationc

subject agec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001610

has super-classes
o b i 0001169
has sub-classes
subject age at time of specimen collectionc

subject age - unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000114

has super-classes
organism datumc

subject age at time of specimen collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001775

has super-classes
subject agec

subject age at time of specimen collection specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002157

has super-classes
subject age specificationc
o b i 0001927 some subject age at time of specimen collectionc

subject age specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002156

has super-classes
duration specificationc
is aboutop some subject organismc
o b i 0001927 some o b i 0001169
i a o 0000039op max 1
o b i 0002135dp some
has sub-classes
subject age at time of specimen collection specificationc

subject anatomical sitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000025

has super-classes
c h m o 0000993c
part ofop some subject organismc
has sub-classes
p o 0009011c

subject body productc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000028

has super-classes
c h m o 0000993c
r o 0003001 some subject organismc
has sub-classes
animal body productc, plant productc

subject descriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001614

has super-classes
s i o 000136
member ofop some NCBI BioSample Pathogen.cl standardc

subject diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001617

Controlled vocabulary. Human specimen source: https://bioportal.bioontology.org/ontologies/DOID or https://www.ncbi.nlm.nih.gov/mesh/1000067
has super-classes
d o i d 4
inheres inop some subject organismc

subject disease outcomec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001212

Note that this is closely related to OGMS_0000063 "disease course" that lists chronic, progressive, transient and accute processes.
has super-classes
personal health datumc
has sub-classes
n c i t c115935c, n c i t c28554c, o m i t 0004227c

subject disease specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002165

Controlled vocabulary. Human specimen source: https://bioportal.bioontology.org/ontologies/DOID or https://www.ncbi.nlm.nih.gov/mesh/1000067
has super-classes
o b i 0001930
is aboutop some subject diseasec
o b i 0001927 some d o i d 4

subject disease stagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001625

has super-classes
personal health datumc

subject health status (AHA)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002025

has super-classes
organism datumc
has sub-classes
critical health statusc, fair health statusc, good health statusc, n c i t c28554c, serious health statusc, undetermined health status - awaiting assessmentc

subject health status (GSCID-BRC)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000110

has super-classes
organism datumc
has sub-classes
n c i t c115935c, n c i t c25610c, n c i t c28554c

subject health status (NCIT)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002103

has super-classes
organism datumc
has sub-classes
n c i t c115935c, n c i t c126054c, n c i t c25610c, n c i t c28554c, n c i t c82508c

subject health status (UK NHS)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002024

has super-classes
organism datumc
has sub-classes
comfortable health statusc, critical but stable health statusc, critical health statusc, discharged from hospitalc, n c i t c28554c, progressing well health statusc, satisfactory health statusc, stable health statusc

subject health status at time of specimen collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000026

has super-classes
personal health datumc
has sub-classes
n c i t c115935c, n c i t c25610c, n c i t c28554c

subject identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001616

This varies in its type (numeric or string) and its central repository depending on its context (use in a particular application/instance). Note: GSCID-BRC specification states " 'Host' is not the preferred term since some specimens may lack any detectable pathogen". In other words, a person would technically (logically) only have a host identifier AFTER they have been diagnosed as having a pathogen. A health care personal identifier, or a case identifier would be better than a more ephemeral "host id"
has super-classes
o b i 0001141

subject identifier specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002164

has super-classes
string value specificationc
o b i 0001927 some subject identifierc

subject organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002077

has super-classes
investigative subjectc
r o 0000086op some o b i 0001169

subject organism (host) taxonomic speciesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001567

has super-classes
o b i 0001930
o b i 0001927 some n c b i taxon 33090 or n c b i taxon 33213 or n c b i taxon 9606

subject organism common namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001724

has super-classes
n c i t c42614c
i a o 0000219 some o b i 0100026

subject organism common name specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002163

has super-classes
string value specificationc
o b i 0001927 some subject organism common namec

subject provided consentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002030

has super-classes
consent datumc

subject sex specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000031

Gender is not used because it is a term referencing human social and cultural convention.
has super-classes
o b i 0001930
o b i 0001927 some p a t o 0001894c

subnational regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001742

has super-classes
e n v o 00000005c
has sub-classes
Region (England) (entry subject to GAZ replacement)c, g a z 00002848c, g a z 00003092c, g a z 00003201c, g a z 00004125c, g a z 00004759c, g a z 00004944c
is disjoint with
n c i t c25632c, n c i t c87194, n c i t c89811c

subspeciesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_subspecies

has super-classes
taxonomic rank

substantial alcohol use/abuse statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001092

has super-classes
behavioural risk factorc

survey study sampling strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0100582

Date :
23T11:04:13Z/09/2022
Contributors :
https://orcid.org/0000-0001-5275-8866
has super-classes
g e n e p i o 0100219

swabbing for specimen collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002117

has super-classes
o b i 0600005

SWEETRealmc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001826

has super-classes
source databasec

swimming / wadingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001663

has super-classes
human water activityc

symbiotic rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001238

has super-classes
isolate organism rolec

symptom cessation datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001789

has super-classes
symptom history itemc

symptom durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001784

This may be a calculated field if symptoms are reported to cease on a particular date. Often however symptom duration is reported more generally as a date or time range since cesation date is less certain.
has super-classes
symptom history itemc
e f o 0000433c

symptom history itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001258

has super-classes
i a o 0000416
has sub-classes
symptom cessation datec, symptom durationc, symptom onset datec

symptom onset datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/FLU_0000976

has super-classes
symptom history itemc

symptom recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001287

has super-classes
draft GenEpiO component recordc

synthetic sample scopec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001586

has super-classes
o b i 0001884

synthetic sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001970

has super-classes
library sourcec

targeted locus (loci) projectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001110

has super-classes
project data typec

Targeted Locus Loci data capturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001751

has super-classes
o b i 0001899

taxonomic datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001183

has super-classes
i a o 0000027
has sub-classes
genus of pathogenc, species of pathogenc

TB lineage 1 - Indo-Oceanicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002012

has super-classes
Mycobacterium tuberculosis lineagec

TB lineage 2 - East-Asian, includes Bejingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002009

has super-classes
Mycobacterium tuberculosis lineagec

TB lineage 3 - East-African Indian, includes CAS/Delhic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002010

has super-classes
Mycobacterium tuberculosis lineagec

TB lineage 4 - Euro-American, includes Haarlem, LAM3, X, T, F11, H37Rvc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002011

has super-classes
Mycobacterium tuberculosis lineagec

TB lineage 5 - West African 1c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002013

has super-classes
Mycobacterium tuberculosis lineagec

TB lineage 6 - West African 2c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002014

has super-classes
Mycobacterium tuberculosis lineagec

TB lineage 7 - Ethiopiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001116

has super-classes
Mycobacterium tuberculosis lineagec

temperature of air - average dailyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001725

has super-classes
environmental datumc
is aboutop some e n v o 00002005
is aboutop some p a t o 0000146c

temperature of samplec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001627

has super-classes
environmental datumc
is aboutop some p a t o 0000146c

test drug maximum concentrationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002100

has super-classes
i a o 0000027

test drug maximum concentration specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002169

has super-classes
decimal value specificationc
i a o 0000039op some u o 0000016 or u o 0000274
o b i 0001927 some test drug maximum concentrationc

test drug minimum concentrationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002101

has super-classes
i a o 0000027

test drug minimum concentration specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002170

has super-classes
decimal value specificationc
i a o 0000039op some u o 0000016 or u o 0000274
o b i 0001927 some test drug minimum concentrationc

test history itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001497

has super-classes
i a o 0000416
has sub-classes
lab test result datec

test specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001688

has super-classes
draft GenEpiO component recordc
has sub-classes
CGF typec, MIRU24 - Canadian standardc, MIRU24 - international standardc, MLST clonal complexc, PFGE patternc, PFGE test specificationc, antigenic formulac, cluster identifierc, m l v ac, o m i t 0027406c, o m p 0000207c, phage type e-coli 0157 (PT)c, phage type salmonella (DT)c, phage type specificationc, serotype specificationc, serovar/serotype common namec, soluble inorganic materialc, subgroupc, viral subtypec

test threshold measurement comparatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001001

has super-classes
phenotypic antimicrobial drug susceptibility test datumc
has sub-classes
equal toc, greater thanc, greater than or equal toc, less thanc, less than or equal toc

textual test resultc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001704

has super-classes
i a o 0000300

TGNc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001824

has super-classes
source databasec

the Global Microbial Identifier Minimum Data for Matching (MDM) Standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000036

has super-classes
n c i t c103180c

time value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002113

has super-classes
o b i 0001931
i a o 0000039op max 1 u o 0000003
o b i 0002135dp some date time

total phosphorous concentrationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000041

has super-classes
environmental datumc

train travelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001060

has super-classes
travel modec

transcript or protein expression objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001599

has super-classes
o b i 0001892c

transcriptome data from specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001748

has super-classes
o b i 0001882

transcriptome or gene expressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001111

has super-classes
project data typec

transcriptomic sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001971

has super-classes
library sourcec

transmission of infectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/TRANS_0000000

TRANS follows the CDC Epidemiology model of transmission between two hosts, a reservoir and host or other non-host, non-reservoir entities (e.g), a needle and a host.
is equivalent to
g o 0008150c and (has inputop some i d o 0000659c) and (has outputop some o b i 0000925) and (r o 0002404 some i d o 0000495c)
has super-classes
g o 0008150c
has sub-classes
direct transmissionc, indirect transmissionc

travel destinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001783

has super-classes
human exposure event - travel datumc
has sub-classes
travel outside Canadac, travel outside province/territoryc

travel destination specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002173

has super-classes
o b i 0001930
is aboutop some travel destinationc
o b i 0001927 some n c i t c25160c or n c i t c25464c or n c i t c25632c or n c i t c80234c or n c i t c87194 or n c i t c89811c

travel end datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000122

has super-classes
travel history itemc
afterop some travel start datec

travel for pleasurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001066

has super-classes
travel reasonc
has sub-classes
rural backpacking activityc, travel tourc, visiting relative/friendsc

travel history itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000120

has super-classes
organism location history datumc
has sub-classes
travel end datec, travel start datec

travel modec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001064

has super-classes
human exposure event - travel datumc
has sub-classes
airline travelc, boat / cruise travelc, bus travelc, car travelc, train travelc

travel outside Canadac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001118

Date :
27T04:35:17Z/05/2021
has super-classes
travel destinationc

travel outside province/territoryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001119

Date :
27T04:36:13Z/05/2021
has super-classes
travel destinationc

travel reasonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001065

has super-classes
human exposure event - travel datumc
has sub-classes
business activityc, religious missionairy activityc, travel for pleasurec, unsure of travel reasonc

travel start datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000121

has super-classes
travel history itemc

travel tourc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001071

has super-classes
travel for pleasurec

treated and released (not admitted to hospital)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002021

has super-classes
host hospital service statusc

treated and transferredc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002022

has super-classes
host hospital service statusc

treated water - ambient temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001154

has super-classes
water exposure by sourcec
has sub-classes
bottled waterc, municipal waterc, pool waterc, spray-wading waterc, well water - treatedc

treated water - warm/hotc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001217

has super-classes
water exposure by sourcec
has sub-classes
jacuzzi waterc, spa waterc, whirlpool waterc

treatment end datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001036

has super-classes
treatment history datumc
afterop some treatment start datec

treatment history datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001023

has super-classes
i a o 0000416
has sub-classes
treatment end datec, treatment start datec

treatment start datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001025

has super-classes
treatment history datumc

trierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002126

has super-classes
n c i t c43167c

tube containing antimicrobialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002121

has super-classes
n c i t c41277c

tube containing media or preservativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002120

has super-classes
n c i t c41277c

tuberculosis infection anatomical sitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001098

has super-classes
b f o 0000029

tuberculosis treatment drugc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001039

has super-classes
c h e b i 36357
has sub-classes
first line tuberculosis drugc, second line or reserve tuberculosis drugc

undetermined health status - awaiting assessmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001852

has super-classes
ex o 0000038c
subject health status (AHA)c

unknown sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001730

has super-classes
c h m o 0002743c

unsigned integer value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002144

has super-classes
unsigned long integer value specificationc
o b i 0002135dp some unsigned int
has sub-classes
unsigned short integer value specificationc

unsigned long integer value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002166

has super-classes
decimal value specificationc
o b i 0002135dp some unsigned long
has sub-classes
unsigned integer value specificationc

unsigned short integer value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002151

has super-classes
unsigned integer value specificationc
o b i 0002135dp some unsigned short

unsure of travel reasonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001072

has super-classes
travel reasonc

untreated waterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001151

has super-classes
water exposure by sourcec
has sub-classes
Well water - untreatedc

upload modified datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001782

has super-classes
isolate history itemc
afterop some isolate upload datec

URL specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002172

has super-classes
string value specificationc
o b i 0001927 some s i o 000811c
o b i 0002135dp exactly 1

user identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001799

has super-classes
i a o 0000577
has sub-classes
g e n e p i o 0001433c

vaccum devicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002127

has super-classes
o b i 0002814
has sub-classes
n c i t c63362c

vacuuming for specimen collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002119

has super-classes
o b i 0600005

variant calling / pathogen identification and clusteringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001805

has super-classes
assembly and annotation project objectivec

variation projectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001112

has super-classes
project data typec

vegetarianc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001040

has super-classes
dietary restrictionc

vehicle-born ingestionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/TRANS_0000012

has super-classes
indirect transmissionc

viral RNA sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001972

has super-classes
library sourcec

viral subtypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001717

has super-classes
test specificationc

virulence factor namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002130

has super-classes
i a o 0000300
is aboutop some i d o 0000547c

virulence testing protocol namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002131

has super-classes
i a o 0000300
is aboutop some i d o 0000547c

visiting relative/friendsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001070

has super-classes
travel for pleasurec

water exposure by sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001276

has super-classes
investigative subjectc
has sub-classes
treated water - ambient temperaturec, treated water - warm/hotc, untreated waterc

water related exposure eventc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001044

has super-classes
infectious disease exposure eventc

WCS strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001991

has super-classes
library strategyc

well water - treatedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001168

has super-classes
e n v o 01000002
treated water - ambient temperaturec

Well water - untreatedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001169

has super-classes
e n v o 01000002
untreated waterc

WGS strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001992

has super-classes
library strategyc

Whirlpak sampling bagc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002122

has super-classes
n c i t c43167c

whirlpool waterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001221

has super-classes
treated water - warm/hotc

whole genomic data capturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001591

has super-classes
o b i 0001899

Wikipediac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001825

has super-classes
source databasec

worsening health trendc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001853

has super-classes
health status trend datumc
r o 0002083op some stable health trendc

WXS strategyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001993

has super-classes
library strategyc

x c o 0000412c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/XCO_0000412

has super-classes
outcome of pregnancy associated with illnessc
host illness associated withc

Xbalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001710

has super-classes
primary enzyme (LMAAI)c

Object Properties

adjacent toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002220

afterop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001739

Damion Dooley's note: Intention is to have it be the inverse of "before". This allows axioms like "B after A" to be placed in class B, rather than having to phrase them as "A before B" in class A. I believe time dependency relations (conditions) don't imply existence by themselves. If B after A, and B exists, this doesn't necessarily mean that A exists, only that if A does exist, it must be before B. To add that extra existence implication probably requires the "causally downstream of" and "immediately causally downstream of" RO relations, in a closed system where B cannot exist any other way.

has characteristics : transitive

is inverse of
r o 0002083op

aligned withop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002001

b f o 0000051op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000051

Damion comments: In GenEpiO, If an entity has more than one value specification (in a conjunction), then it means the entitiy is a complex entity that can have a value for each specification. Minimum data requirements can be spelled out using some, min 1, max 10 etc. restrictions.

exactMatchop back to ToC or Object Property ToC

IRI: http://www.w3.org/2004/02/skos/core#exactMatch

examplesop back to ToC or Object Property ToC

IRI: https://w3id.org/linkml/examples

has range
examplec

has componentop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002180

has inputop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002233

has super-properties
has participantop

has memberop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002351

has outputop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002234

has super-properties
has participantop

has participantop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000057

has sub-properties
has inputop, has outputop

i a o 0000039op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000039

inheres inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000052

is aboutop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000136

has domain
i a o 0000030

local namesop back to ToC or Object Property ToC

IRI: https://w3id.org/linkml/local_names

located inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001025

location ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001015

member ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002350

obsolete has string specification ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001340

obsolete: has categorical specification ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002470

obsolete: has categorical value specificationop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002471

has super-properties
o b i 0001938
has range
o b i 0001930

obsolete: has string value specificationop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002469

has super-properties
o b i 0001938
has range
string value specificationc

part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000050

r o 0002083op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002083

is inverse of
afterop

realized inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000054

Data Properties

abstractdp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/abstract

has super-properties
top data property
has range
boolean

commentsdp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/comments

has super-properties
top data property

created ondp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/created_on

has super-properties
top data property
has range
date or date time or date time stamp

data collection statedp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/data_collection_state

has super-properties
top data property

descriptiondp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/description

has super-properties
top data property

exact mappingsdp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/exact_mappings

has super-properties
top data property

from schemadp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/from_schema

has range
any u r i

identifierdp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/identifier

has super-properties
top data property

imported fromdp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/imported_from

has super-properties
top data property
has range
string

local name valuedp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/local_name_value

has super-properties
top data property
has domain
local namec
has range
string

local_name_sourcedp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/local_name_source

has super-properties
top data property
has domain
local namec
has range
n c name

maximum valuedp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/maximum_value

has super-properties
top data property
has range
int

meaningdp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/meaning

has super-properties
top data property

minimum valuedp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/minimum_value

has super-properties
top data property
has range
int

multivalueddp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/multivalued

has super-properties
top data property
has range
boolean

namedp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/name

has super-properties
top data property
has range
string

o b i 0002135dp back to ToC or Data Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002135

has super-properties
top data property

patterndp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/pattern

has super-properties
top data property
has range
string

permissible valuesdp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/permissible_values

has super-properties
top data property

recommendeddp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/recommended

has super-properties
top data property
has range
boolean

requireddp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/required

has super-properties
top data property
has range
boolean

see alsodp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/see_also

has super-properties
top data property
has range
any u r i

statusdp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/status

has super-properties
top data property
has range
any u r i

type uridp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/type_uri

URI is typically drawn from the set of URI's defined in OWL (https://www.w3.org/TR/2012/REC-owl2-syntax-20121211/#Datatype_Maps)
has super-properties
top data property

valuedp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/value

has super-properties
top data property
has domain
examplec

value descriptiondp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/value_description

has super-properties
top data property
has domain
examplec
has range
string

values fromdp back to ToC or Data Property ToC

IRI: https://w3id.org/linkml/values_from

has super-properties
top data property
has range
any u r i

Named Individuals

_test_individualni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002177

Agriculture and Agri-Food Canada (AAFC)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0100553

Date :
23T10:29:32Z/09/2022
belongs to
o b i 0000245c

Canadian Food Inspection Agency (CFIA)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0100552

Date :
23T10:23:42Z/09/2022
belongs to
o b i 0000245c

Environment and Climate Change Canada (ECCC)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0100555

Date :
23T10:38:21Z/09/2022
belongs to
o b i 0000245c

Fisheries and Oceans Canada (DFO)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0100556

Date :
23T10:42:12Z/09/2022
belongs to
o b i 0000245c

g e n e p i o 0001367ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001367

Damion Dooley's note: Here we are exploring the use of individuals/instances to describe local picklists for GenEpiO driven software.
belongs to
health authorityc
has facts
located inop g a z 00002562
has memberop g e n e p i o 0001368
has memberop g e n e p i o 0001369
has memberop g e n e p i o 0001370
has memberop g e n e p i o 0001372
has memberop g e n e p i o 0001373

g e n e p i o 0001368ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001368

has facts
member ofop g e n e p i o 0001367

g e n e p i o 0001369ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001369

has facts
member ofop g e n e p i o 0001367

g e n e p i o 0001370ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001370

has facts
member ofop g e n e p i o 0001367

g e n e p i o 0001372ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001372

has facts
member ofop g e n e p i o 0001367

g e n e p i o 0001373ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001373

has facts
member ofop g e n e p i o 0001367

g e n e p i o 0001897ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001897

Health Canadani back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0100554

Date :
23T10:33:24Z/09/2022
belongs to
o b i 0000245c

ISO_23418.organization_contact.serviceni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002227

Date :
17T00:54:44Z/11/2019
belongs to
draft ISO sequence repository fieldc

MSHni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001815

NCI_Thesaurusni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001816

NIFSTDni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001817

Public Health Agency of Canada (PHAC)ni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0100551

Date :
23T10:10:13Z/09/2022
belongs to
o b i 0000245c

PulseNet:AntigenFormni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002197

Date :
18T00:23:18Z/04/2019
belongs to
PulseNet Canada Salmonella fieldc

PulseNet:cdc_idni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002202

Date :
18T00:28:01Z/04/2019
belongs to
PulseNet Canada fieldc

PulseNet:FoodNetni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002208

Date :
18T00:36:39Z/04/2019
belongs to
PulseNet Canada fieldc

PulseNet:IsolatDateni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002195

Date :
17T23:56:33Z/04/2019
belongs to
date value specification (ISO 8601)c
PulseNet Canada fieldc

PulseNet:LabIDni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002179

Date :
17T23:31:44Z/04/2019
belongs to
PulseNet Canada fieldc

PulseNet:ListMemberni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002203

Date :
18T00:28:35Z/04/2019
belongs to
PulseNet Canada fieldc

PulseNet:NARMS-EBni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002207

Date :
18T00:35:55Z/04/2019
belongs to
PulseNet Canada fieldc

PulseNet:OGroupni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002199

Date :
18T00:24:53Z/04/2019
belongs to
PulseNet Canada Salmonella fieldc

PulseNet:OtherStateIsolateni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002192

Date :
17T23:53:47Z/04/2019
belongs to
PulseNet Canada fieldc

PulseNet:Outbreakni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002201

Date :
18T00:27:08Z/04/2019
belongs to
PulseNet Canada fieldc

PulseNet:PatientAgeni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002193

Date :
17T23:54:24Z/04/2019
belongs to
PulseNet Canada fieldc

PulseNet:PatientSexni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002194

Date :
17T23:55:04Z/04/2019
belongs to
PulseNet Canada fieldc

PulseNet:PFGE-BlnI-fileni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002213

Date :
18T00:42:11Z/04/2019
belongs to
PulseNet Canada Salmonella fieldc

PulseNet:PFGE-BlnI-patternni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002214

Date :
18T00:42:42Z/04/2019
belongs to
PulseNet Canada Salmonella fieldc

PulseNet:PFGE-BlnI-rundateni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002215

Date :
18T00:43:50Z/04/2019
belongs to
PulseNet Canada Salmonella fieldc

PulseNet:PFGE-BlnI-statusni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002216

Date :
18T00:44:44Z/04/2019
belongs to
PulseNet Canada Salmonella fieldc

PulseNet:PFGE-SpeI-fileni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002217

Date :
18T00:45:15Z/04/2019
belongs to
PulseNet Canada Salmonella fieldc

PulseNet:PFGE-SpeI-patternni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002218

Date :
18T00:45:41Z/04/2019
belongs to
PulseNet Canada Salmonella fieldc

PulseNet:PFGE-SpeI-rundateni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002219

Date :
18T00:46:21Z/04/2019
belongs to
PulseNet Canada Salmonella fieldc

PulseNet:PFGE-SpeI-statusni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002220

Date :
18T00:47:00Z/04/2019
belongs to
PulseNet Canada Salmonella fieldc

PulseNet:PFGE-XbaI-fileni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002209

Date :
18T00:38:57Z/04/2019
belongs to
PulseNet Canada Salmonella fieldc

PulseNet:PFGE-XbaI-patternni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002210

Date :
18T00:39:23Z/04/2019
belongs to
PulseNet Canada Salmonella fieldc

PulseNet:PFGE-XbaI-rundateni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002211

Date :
18T00:40:05Z/04/2019
belongs to
PulseNet Canada Salmonella fieldc

PulseNet:PFGE-XbaI-statusni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002212

Date :
18T00:41:39Z/04/2019
belongs to
PulseNet Canada Salmonella fieldc

PulseNet:Phagetypeni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002204

Date :
18T00:29:20Z/04/2019
belongs to
PulseNet Canada fieldc

PulseNet:ReceivedDateni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002221

Date :
18T00:57:28Z/04/2019
belongs to
PulseNet Canada fieldc

PulseNet:Serotypeni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002200

Date :
18T00:25:22Z/04/2019
belongs to
PulseNet Canada Salmonella fieldc

PulseNet:SourceCityni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002184

Date :
17T23:40:57Z/04/2019
belongs to
PulseNet Canada fieldc

PulseNet:SourceCountryni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002182

Date :
17T23:37:19Z/04/2019
belongs to
PulseNet Canada fieldc

PulseNet:SourceSiteni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002187

Date :
17T23:47:10Z/04/2019
belongs to
PulseNet Canada fieldc

PulseNet:SourceStateni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002183

Date :
17T23:38:09Z/04/2019
belongs to
PulseNet Canada fieldc

PulseNet:SourceTypeni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002188

Date :
17T23:48:49Z/04/2019
belongs to
PulseNet Canada fieldc

PulseNet:Statusni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002206

Date :
18T00:30:44Z/04/2019
belongs to
PulseNet Canada fieldc

PulseNet:SubmittedNumberni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002191

Date :
17T23:52:01Z/04/2019
belongs to
PulseNet Canada fieldc

PulseNet:Subspeciesni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002198

Date :
18T00:24:11Z/04/2019
belongs to
PulseNet Canada Salmonella fieldc

PulseNet:TEMPni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002205

Date :
18T00:29:58Z/04/2019
belongs to
PulseNet Canada fieldc

PulseNet:Traveled_Toni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002189

Date :
17T23:49:47Z/04/2019
belongs to
PulseNet Canada Salmonella fieldc

PulseNet:TypeDetailsni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002190

Date :
17T23:51:02Z/04/2019
belongs to
PulseNet Canada fieldc

PulseNet:UploadDateni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002229

Date :
17T22:47:51Z/04/2019
belongs to
PulseNet Canada fieldc

PulseNet:UploadModifiedDateni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002196

Date :
18T00:21:46Z/04/2019
belongs to
PulseNet Canada fieldc

SourceCountryni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0002180

Date :
17T23:32:45Z/04/2019

United Nationsni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001589

Annotation Properties

commentap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#comment

creatorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/creator

dateap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/genepio/imports/odes_field.owl#date

dateap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/genepio/imports/temp_import.owl#date

dateap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/date

default namespaceap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#default-namespace

descriptionap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/description

has db xrefap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasDbXref

labelap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#label

licenseap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/license

licenseap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/license

mboxap back to ToC or Annotation Property ToC

IRI: http://xmlns.com/foaf/0.1/mbox

metadata sectionap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000001

obsolete: user interface value specificationap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001772

qualified cardinalityap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2002/07/owl#qualifiedCardinality

see alsoap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#seeAlso

sourceap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/source

term as in existing standardap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000004

term sourceap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000005

titleap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/title

user interface definitionap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000162

user interface featureap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001763

user interface helpap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001745

user interface hiddenap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0001746

user interface labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/GENEPIO_0000006

General Axioms

All Disjoint Classes back to ToC

draft data standardc, data specificationc, obsolete: field specificationc, n c i t c103180c

All Disjoint Classes back to ToC

NCBI SRA meta information standardc, NCBI Antibiogram standardc, NCBI BioSample Pathogen.cl standardc, NCBI BioProject standardc

Namespace Declarations back to ToC

default namespace
http://purl.obolibrary.org/obo/genepio.owl#
10-1080
http://www.tandfonline.com/doi/pdf/10.1080/
2-0
http://purl.obolibrary.org/obo/bfo/2.0/
2023-06-21
http://purl.obolibrary.org/obo/genepio/releases/2023-06-21/
267739557-salmonella-host-interactions---modulation-of-the-host-innate-immune-system
https://www.researchgate.net/publication/267739557_Salmonella-Host_Interactions_-_Modulation_of_the_Host_Innate_Immune_System/
ancestro
http://www.ebi.ac.uk/ancestro/
bao
http://www.bioassayontology.org/bao#
core
http://www.w3.org/2004/02/skos/core#
dc
http://purl.org/dc/elements/1.1/
dwq
https://www.who.int/water_sanitation_health/dwq/
edamontology-org
http://edamontology.org/
efo
http://www.ebi.ac.uk/efo/
foaf
http://xmlns.com/foaf/0.1/
imports
http://purl.obolibrary.org/obo/genepio/imports/
linkml
https://w3id.org/linkml/
mesh
http://purl.bioontology.org/ontology/MESH/
ncbitaxon
http://purl.obolibrary.org/obo/NCBITaxon#
ns
http://www.w3.org/2006/vcard/ns#
obo
http://purl.obolibrary.org/obo/
oboInOwl
http://www.geneontology.org/formats/oboInOwl#
odes_field
http://purl.obolibrary.org/obo/genepio/imports/odes_field.owl#
orcid-org
http://orcid.org/
owl
http://www.w3.org/2002/07/owl#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
resource
http://semanticscience.org/resource/
samples
https://ena-docs.readthedocs.io/en/latest/submit/samples/
sct
http://snomed.info/sct/
serversidedesign
https://community.i2b2.org/wiki/display/ServerSideDesign/
temp_import
http://purl.obolibrary.org/obo/genepio/imports/temp_import.owl#
terms
http://purl.org/dc/terms/
typon
http://purl.phyloviz.net/ontology/typon#
wiki
https://terms.tdwg.org/wiki/
www-iso-org
https://www.iso.org/
xsd
http://www.w3.org/2001/XMLSchema#

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni .