Classes

1 to 1 homology
1 to 1 orthology
1 to many homology
1 to many orthology
allogeny
apomorphy
apparent orthology
between-species paralogy
biological homology
chromosomal homology
convergence
deep homology
equivalogy
functional equivalence
gametology
hemiplasy
heterochronous homology
historical homology
homeosis
homocracy
homoeology
homology
homoplasy
homotopy
hypermorphosis
in-paralogy
interology
isoorthology
iterative homology
latent homology
many to many homology
many to many orthology
mimicry
neoteny
non functional homology
ohnology
orthology
out-paralogy
paedomorphorsis
parallelism
paralogy
paramorphism
paraxenology
partial homology
peramorphosis
plerology
plesiomorphy
postdisplacement
pro-orthology
progenesis
protein structural homology
pseudoparalogy
regulogy
reversal
semi-orthology
serial homology
similarity
structural homology
syngeny
synology
syntenic homology
syntenic orthology
syntenic paralogy
tandem paralogy
within-species paralogy
xenology

1 to 1 homology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000019

has super-classes: historical homology^c
has sub-classes: 1 to 1 orthology^c, apparent orthology^c

1 to 1 orthology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000020

has super-classes: orthology^c; 1 to 1 homology^c

1 to many homology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000037

has super-classes: historical homology^c
has sub-classes: 1 to many orthology^c

1 to many orthology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000034

has super-classes: orthology^c; 1 to many homology^c
has sub-classes: pro-orthology^c, semi-orthology^c

allogeny^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000021

apomorphy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000042

has super-classes: historical homology^c
is disjoint with: plesiomorphy^c

apparent orthology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000060

The genes are actually paralogs but appear to be orthologous due to differential, lineage-specific gene loss.

has super-classes: 1 to 1 homology^c; between-species paralogy^c

between-species paralogy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000050

The genes have diverged before a speciation event.

has super-classes: paralogy^c
has sub-classes: apparent orthology^c
is disjoint with: within-species paralogy^c

biological homology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000008

Applicable only to morphology. A certain degree of ambiguity is accepted between biological homology and parallelism.

has super-classes: homology^c
has sub-classes: heterochronous homology^c, homeosis^c, iterative homology^c

chromosomal homology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000047

has super-classes: historical homology^c
has sub-classes: gametology^c

convergence^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000004

Convergence usually implies a notion of adaptation.

has super-classes: homoplasy^c
has sub-classes: mimicry^c

deep homology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000044

Used for structures in distantly related taxa.

has super-classes: homocracy^c; parallelism^c

equivalogy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000062

This may include examples of orthology, paralogy and xenology.

has super-classes: historical homology^c; functional equivalence^c
has sub-classes: isoorthology^c
is disjoint with: non functional homology^c

functional equivalence^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000065

has super-classes: similarity^c
has sub-classes: equivalogy^c

gametology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000046

has super-classes: chromosomal homology^c

hemiplasy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000045

has super-classes: historical homology^c

heterochronous homology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000028

has super-classes: biological homology^c
has sub-classes: paedomorphorsis^c, peramorphosis^c

historical homology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000007

has super-classes: homology^c
has sub-classes: 1 to 1 homology^c, 1 to many homology^c, apomorphy^c, chromosomal homology^c, equivalogy^c, hemiplasy^c, interology^c, many to many homology^c, orthology^c, paralogy^c, plesiomorphy^c, regulogy^c, xenology^c

homeosis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000072

has super-classes: biological homology^c
is disjoint with: homotopy^c

homocracy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000003

Homology and homocracy are not mutually exclusive. The homology relationships of patterning genes may be unresolved and thus may include orthologues and paralogues.

has super-classes: similarity^c
has sub-classes: deep homology^c, paramorphism^c, syngeny^c

homoeology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000073

On a long term, it is hard to distinguish allopolyploidy from whole genome duplication.

has super-classes: ohnology^c; synology^c

homology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000001

This broad definition encompasses all the working definitions proposed so far in the literature.

has super-classes: similarity^c
has sub-classes: biological homology^c, historical homology^c, structural homology^c
is disjoint with: homoplasy^c

homoplasy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000002

has super-classes: similarity^c
has sub-classes: convergence^c, parallelism^c, reversal^c
is disjoint with: homology^c

homotopy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000071

Theissen (2005) mentions that some authors may consider homotopy to be distinct from homology, but this is not the standard use.

has super-classes: structural homology^c
is disjoint with: homeosis^c

hypermorphosis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000052

has super-classes: peramorphosis^c

in-paralogy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000023

has super-classes: paralogy^c
is disjoint with: out-paralogy^c

interology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000063

has super-classes: historical homology^c

isoorthology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000054

has super-classes: orthology^c; equivalogy^c

iterative homology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000066

has super-classes: biological homology^c
has sub-classes: paramorphism^c, serial homology^c

latent homology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000057

Used for structures in closely related taxa.

has super-classes: parallelism^c; syngeny^c

many to many homology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000036

has super-classes: historical homology^c
has sub-classes: many to many orthology^c

many to many orthology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000048

has super-classes: orthology^c; many to many homology^c

mimicry^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000033

has super-classes: convergence^c

neoteny^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000032

has super-classes: paedomorphorsis^c

non functional homology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000016

has super-classes: structural homology^c
is disjoint with: equivalogy^c

ohnology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000022

has super-classes: paralogy^c
has sub-classes: homoeology^c

orthology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000017

The term is sometimes also used for anatomical structures.

has super-classes: historical homology^c
has sub-classes: 1 to 1 orthology^c, 1 to many orthology^c, isoorthology^c, many to many orthology^c
is disjoint with: paralogy^c

out-paralogy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000024

has super-classes: paralogy^c
is disjoint with: in-paralogy^c

paedomorphorsis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000029

has super-classes: heterochronous homology^c
has sub-classes: neoteny^c, postdisplacement^c, progenesis^c
is disjoint with: peramorphosis^c

parallelism^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000005

Can be applied for features present in closely related organisms but not present continuously in all the members of the lineage.

has super-classes: homoplasy^c
has sub-classes: deep homology^c, latent homology^c

paralogy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000011

has super-classes: historical homology^c
has sub-classes: between-species paralogy^c, in-paralogy^c, ohnology^c, out-paralogy^c, plerology^c, syntenic paralogy^c, tandem paralogy^c, within-species paralogy^c
is disjoint with: orthology^c

paramorphism^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000074

has super-classes: homocracy^c; iterative homology^c

paraxenology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000068

has super-classes: xenology^c

partial homology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000014

has super-classes: structural homology^c

peramorphosis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000030

has super-classes: heterochronous homology^c
has sub-classes: hypermorphosis^c
is disjoint with: paedomorphorsis^c

plerology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000069

This phenomenon is usually due to gene conversion process.

has super-classes: paralogy^c

plesiomorphy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000043

This term is usually contrasted to apomorphy.

has super-classes: historical homology^c
is disjoint with: apomorphy^c

postdisplacement^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000051

has super-classes: paedomorphorsis^c

pro-orthology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000025

has super-classes: 1 to many orthology^c

progenesis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000031

has super-classes: paedomorphorsis^c

protein structural homology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000015

has super-classes: structural homology^c

pseudoparalogy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000061

These genes may come out as paralogs in a single-genome analysis.

has super-classes: xenology^c

regulogy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000075

has super-classes: historical homology^c

reversal^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000009

has super-classes: homoplasy^c

semi-orthology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000026

The converse of pro-orthologous.

has super-classes: 1 to many orthology^c

serial homology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000027

has super-classes: iterative homology^c

similarity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000000

has sub-classes: functional equivalence^c, homocracy^c, homology^c, homoplasy^c

structural homology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000006

has super-classes: homology^c
has sub-classes: homotopy^c, non functional homology^c, partial homology^c, protein structural homology^c, syntenic homology^c

syngeny^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000058

Cannot be used when orthologous patterning gene are organizing obviously non-homologous structures in different organisms due for example to pleiotropic functions of these genes.

has super-classes: homocracy^c
has sub-classes: latent homology^c

synology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000053

has super-classes: xenology^c
has sub-classes: homoeology^c

syntenic homology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000010

has super-classes: structural homology^c
has sub-classes: syntenic orthology^c, syntenic paralogy^c

syntenic orthology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000013

has super-classes: syntenic homology^c

syntenic paralogy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000012

has super-classes: syntenic homology^c; paralogy^c

tandem paralogy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000055

has super-classes: paralogy^c

within-species paralogy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000049

has super-classes: paralogy^c
is disjoint with: between-species paralogy^c

xenology^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HOM_0000018

The term is sometimes also used for anatomical structures (e.g. in case of a symbiosis).

has super-classes: historical homology^c
has sub-classes: paraxenology^c, pseudoparalogy^c, synology^c

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni.

Table of Content

Classes

1 to 1 homologyc back to ToC or Class ToC

1 to 1 orthologyc back to ToC or Class ToC

1 to many homologyc back to ToC or Class ToC

1 to many orthologyc back to ToC or Class ToC

allogenyc back to ToC or Class ToC

apomorphyc back to ToC or Class ToC

apparent orthologyc back to ToC or Class ToC

between-species paralogyc back to ToC or Class ToC

biological homologyc back to ToC or Class ToC

chromosomal homologyc back to ToC or Class ToC

convergencec back to ToC or Class ToC

deep homologyc back to ToC or Class ToC

equivalogyc back to ToC or Class ToC

functional equivalencec back to ToC or Class ToC

gametologyc back to ToC or Class ToC

hemiplasyc back to ToC or Class ToC

heterochronous homologyc back to ToC or Class ToC

historical homologyc back to ToC or Class ToC

homeosisc back to ToC or Class ToC

homocracyc back to ToC or Class ToC

homoeologyc back to ToC or Class ToC

homologyc back to ToC or Class ToC

homoplasyc back to ToC or Class ToC

homotopyc back to ToC or Class ToC

hypermorphosisc back to ToC or Class ToC

in-paralogyc back to ToC or Class ToC

interologyc back to ToC or Class ToC

isoorthologyc back to ToC or Class ToC

iterative homologyc back to ToC or Class ToC

latent homologyc back to ToC or Class ToC

many to many homologyc back to ToC or Class ToC

many to many orthologyc back to ToC or Class ToC

mimicryc back to ToC or Class ToC

neotenyc back to ToC or Class ToC

non functional homologyc back to ToC or Class ToC

ohnologyc back to ToC or Class ToC

orthologyc back to ToC or Class ToC

out-paralogyc back to ToC or Class ToC

paedomorphorsisc back to ToC or Class ToC

parallelismc back to ToC or Class ToC

paralogyc back to ToC or Class ToC

paramorphismc back to ToC or Class ToC

paraxenologyc back to ToC or Class ToC

partial homologyc back to ToC or Class ToC

peramorphosisc back to ToC or Class ToC

plerologyc back to ToC or Class ToC

plesiomorphyc back to ToC or Class ToC

postdisplacementc back to ToC or Class ToC

pro-orthologyc back to ToC or Class ToC

progenesisc back to ToC or Class ToC

protein structural homologyc back to ToC or Class ToC

pseudoparalogyc back to ToC or Class ToC

regulogyc back to ToC or Class ToC

reversalc back to ToC or Class ToC

semi-orthologyc back to ToC or Class ToC

serial homologyc back to ToC or Class ToC

similarityc back to ToC or Class ToC

structural homologyc back to ToC or Class ToC

syngenyc back to ToC or Class ToC

synologyc back to ToC or Class ToC

syntenic homologyc back to ToC or Class ToC

syntenic orthologyc back to ToC or Class ToC

syntenic paralogyc back to ToC or Class ToC

tandem paralogyc back to ToC or Class ToC

within-species paralogyc back to ToC or Class ToC

xenologyc back to ToC or Class ToC

Annotation Properties

auto generated byap back to ToC or Annotation Property ToC

commentap back to ToC or Annotation Property ToC

created byap back to ToC or Annotation Property ToC

creation dateap back to ToC or Annotation Property ToC

database_cross_referenceap back to ToC or Annotation Property ToC

dateap back to ToC or Annotation Property ToC

default namespaceap back to ToC or Annotation Property ToC

definitionap back to ToC or Annotation Property ToC

deprecatedap back to ToC or Annotation Property ToC

has_broad_synonymap back to ToC or Annotation Property ToC

has_exact_synonymap back to ToC or Annotation Property ToC