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Informed Consent Ontology (ICO)

Metadata

URI
http://purl.obolibrary.org/obo/ico.owl
Creator(s)
Alla Karnovsky
Asiyah Yu Lin
Christoph Brochhausen
Cooper Stansbury
Elizabeth Eisenhauer
Elizabeth Umberfield
Frank Manion
J. Neil Otte
Jie Zheng
Jonathan Vajda
Kathleen Ford
Marcy Harris
Yongqun "Oliver" He
Contributor(s)
Anna Maria Masci
Chris Stoeckert
Cui Tao
Helena Ellis
Jian Guan
Jihad Obeid
Jonathan Bona
Mathias Brochhausen
William Duncan
Version Information
1.0.187
License
http://creativecommons.org/licenses/by/3.0/
Ontology RDF
RDF (turtle)

Description

Terms were identified from a sample of informed consent templates, and definitions were selected based on concordance between the defintion and the use of the term in the source informed consent template document. We preferentially selected defintioins from the NCI thesuarus.

Table of Contents

  1. Classes
  2. Object Properties
  3. Functional Properties
  4. Datatype Properties
  5. Annotation Properties
  6. Named Individuals
  7. Namespaces
  8. Legend

Overview

Pictures say 1,000 words
Figure 1: Ontology overview

Classes ↑

obsolete_deontic document actc # Classes

URI http://purl.obolibary.org/obo/IAO_0021001
Super-classes oboInOwl:ObsoleteClassc

software developmentc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000008
Super-classes obo:OBI_0000011c
Sub-classes obo:APOLLO_SV_00000524c

countc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000032
Super-classes obo:IAO_0000109c

countingc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000033
Super-classes obo:OBI_0000011c

source code repositoryc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000522
Description

Refers to the stuff that lives on GitHub, not to GitHub or the git software on which it is based
Super-classes obo:IAO_0000310c
Restrictions obo:BFO_0000051op some obo:IAO_0000096c
obo:BFO_0000051op some (obo:IAO_0000027c and ub50bL114C17c)

compiling softwarec # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000524
Description

It's compiling "software" (scare quotes) and not "source code" because you can compile Java bytecode to machine code, and Java bytecode is not technically "source code". Compiling source code would be a subclass of this class (as would compiling Java bytecode, etc.).
Super-classes obo:APOLLO_SV_00000008c
(ub50bL132C29c and ub50bL142C13c)

dataset creatingc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000796
Super-classes obo:OBI_0000011c

entityc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000001
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes owl:Thingc
Sub-classes obo:BFO_0000003c
obo:BFO_0000002c
In domain of obo:IAO_0000235op
In range of obo:IAO_0020013op
obo:IAO_0000219op

continuantc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000002
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000001c
Sub-classes obo:BFO_0000004c
obo:BFO_0000031c
obo:BFO_0000020c
In domain of obo:RO_0000056op
In range of obo:RO_0000057op

occurrentc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000003
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000001c
Sub-classes obo:BFO_0000008c
obo:ICO_0000127c
obo:BFO_0000011c
obo:BFO_0000035c
obo:BFO_0000015c
In domain of obo:RO_0002222op
obo:RO_0002091op
obo:BFO_0000066op
obo:RO_0000057op
obo:BFO_0000062op
obo:BFO_0000063op
In range of obo:BFO_0000062op
obo:RO_0002091op
obo:BFO_0000063op
obo:RO_0002222op
obo:RO_0000056op

independent continuantc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000004
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000002c
Sub-classes obo:BFO_0000040c
obo:IAO_0020006c
obo:BFO_0000141c
In domain of obo:RO_0000087op
obo:RO_0000091op
obo:RO_0000085op
obo:RO_0001025op
obo:RO_0001000op
In range of obo:RO_0001000op
obo:BFO_0000066op
obo:RO_0001025op

obsolete dependent continuantc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000005
Super-classes oboInOwl:ObsoleteClassc

spatial regionc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000006
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000141c
Sub-classes obo:BFO_0000018c
obo:BFO_0000009c
obo:BFO_0000028c
obo:BFO_0000026c

temporal regionc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000008
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000003c
Sub-classes obo:ICO_0000089c
obo:ICO_0000186c
obo:BFO_0000148c
obo:ICO_0000126c
obo:BFO_0000038c

two-dimensional spatial regionc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000009
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000006c

spatiotemporal regionc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000011
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000003c

processc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000015
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000003c
Sub-classes obo:BFO_0000144c
obo:ICO_0000136c
obo:OGMS_0000060c
obo:NCIT_C85521c
obo:IAO_0020009c
obo:IAO_0020023c
obo:OBI_0000011c
obo:ICO_0000301c
obo:OBI_0000339c
obo:BFO_0000182c
cco:Stasisc
obo:OGMS_0000090c
obo:OMRSE_00000192c
obo:GO_0007565c
obo:ICO_0000107c
In domain of obo:BFO_0000055op
In range of obo:IAO_0000413op
obo:BFO_0000054op

dispositionc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000016
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000017c
Sub-classes http://purl.unep.org/sdg/SDGIO_00000024c
obo:ICO_0000078c
obo:ICO_0000201c
obo:ICO_0000262c
obo:BFO_0000034c
obo:MONDO_0000001c
In range of obo:RO_0000091op

realizable entityc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000017
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000020c
Sub-classes obo:BFO_0000023c
obo:BFO_0000016c
In domain of obo:BFO_0000054op
In range of obo:BFO_0000055op

zero-dimensional spatial regionc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000018
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000006c

qualityc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000019
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000020c
Sub-classes http://purl.org/obo/owl/PATO#PATO_0001025c
obo:BFO_0000145c
obo:PATO_0001237c
obo:IAO_0020004c
obo:PATO_0001241c
obo:IAO_0020003c
obo:IAO_0000015c
In range of obo:IAO_0000221op
obo:RO_0000086op

specifically dependent continuantc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000020
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000002c
Sub-classes obo:BFO_0000019c
obo:BFO_0000017c
In domain of obo:RO_0000059op
In range of obo:RO_0000058op
obo:RO_0000053op

rolec # Classes

URI http://purl.obolibrary.org/obo/BFO_0000023
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000017c
Sub-classes obo:OBI_0000444c
obo:IAO_0021008c
obo:IAO_0020024c
obo:ICO_0000285c
obo:ICO_0000086c
obo:OBI_0000319c
obo:IAO_0021021c
obo:OMRSE_00000024c
obo:ICO_0000146c
obo:OOSTT_00000117c
obo:ICO_0000148c
obo:IAO_0021006c
obo:ICO_0000147c
obo:OOSTT_00000062c
obo:ICO_0000045c
obo:ICO_0000425c
obo:ICO_0000287c
obo:IAO_0021300c
obo:OBI_0000093c
obo:IAO_0000442c
obo:ICO_0000309c
obo:ICO_0000151c
obo:ICO_0000073c
obo:OBI_0000112c
obo:ICO_0000424c
obo:IAO_0021031c
obo:ICO_0000169c
obo:REO_0000171c
obo:IAO_0021022c
obo:ICO_0000080c
obo:ICO_0000254c
obo:OMRSE_00000038c
obo:ICO_0000144c
obo:OBI_0000097c
obo:ICO_0000286c
obo:ICO_0000081c
obo:ICO_0000187c
obo:OBI_0000202c
obo:ICO_0000230c
obo:OBI_0000086c
obo:ICO_0000313c
obo:ICO_0000289c
In range of obo:RO_0000087op

fiat object partc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000024
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000040c

one-dimensional spatial regionc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000026
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000006c

object aggregatec # Classes

URI http://purl.obolibrary.org/obo/BFO_0000027
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000040c

three-dimensional spatial regionc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000028
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000006c

sitec # Classes

URI http://purl.obolibrary.org/obo/BFO_0000029
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000141c
Sub-classes obo:ICO_0000231c
obo:ICO_0000118c
obo:GAZ_00000448c

objectc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000030
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000040c
Sub-classes obo:ICO_0000288c

generically dependent continuantc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000031
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000002c
Sub-classes obo:IAO_0000030c
In domain of obo:RO_0000058op
In range of obo:RO_0000059op

functionc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000034
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000016c
Sub-classes obo:OBI_0000453c
obo:OBI_0000370c
obo:OBI_0000379c
obo:ICO_0000112c
obo:OBI_0000372c
In domain of obo:RO_0000079op
In range of obo:RO_0000085op

process boundaryc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000035
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000003c

one-dimensional temporal regionc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000038
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000008c
Sub-classes obo:ICO_0000088c
obo:ICO_0000058c

material entityc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000040
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000004c
Sub-classes obo:OMRSE_00000033c
obo:FMA_67165c
obo:OBI_0000181c
obo:BFO_0000024c
obo:BFO_0000030c
obo:OBI_0100026c
obo:ICO_0000429c
obo:IAO_0000178c
obo:ICO_0000220c
obo:OGMS_0000045c
obo:CL_0000000c
obo:OBI_0000245c
obo:UBERON_0000465c
obo:CHEBI_23367c
obo:OBI_1110109c
obo:OBI_0000047c
obo:BFO_0000027c
obo:UBERON_0000477c
obo:OMRSE_00000022c
obo:OBI_0100051c
In domain of obo:RO_0002002op

continuant fiat boundaryc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000140
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000141c
Sub-classes obo:BFO_0000147c
obo:BFO_0000142c
obo:BFO_0000146c

immaterial entityc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000141
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000004c
Sub-classes obo:BFO_0000006c
obo:BFO_0000029c
obo:BFO_0000140c
In range of obo:RO_0002002op

one-dimensional continuant fiat boundaryc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000142
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000140c

process profilec # Classes

URI http://purl.obolibrary.org/obo/BFO_0000144
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000015c

relational qualityc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000145
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000019c

two-dimensional continuant fiat boundaryc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000146
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000140c

zero-dimensional continuant fiat boundaryc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000147
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000140c

zero-dimensional temporal regionc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000148
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000008c

historyc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000182
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000015c

deoxyribonucleic acidc # Classes

URI http://purl.obolibrary.org/obo/CHEBI_16991
Super-classes obo:CHEBI_33696c

molecular entityc # Classes

URI http://purl.obolibrary.org/obo/CHEBI_23367
Super-classes obo:BFO_0000040c
Sub-classes obo:REO_0000280c
obo:CHEBI_33839c

nucleic acidc # Classes

URI http://purl.obolibrary.org/obo/CHEBI_33696
Super-classes obo:CHEBI_33839c
Sub-classes obo:CHEBI_16991c
obo:CHEBI_33697c

ribonucleic acidc # Classes

URI http://purl.obolibrary.org/obo/CHEBI_33697
Super-classes obo:CHEBI_33696c

macromoleculec # Classes

URI http://purl.obolibrary.org/obo/CHEBI_33839
Super-classes obo:CHEBI_23367c
Sub-classes obo:CHEBI_33696c

material disposalc # Classes

URI http://purl.obolibrary.org/obo/CHMO_0002832
Super-classes obo:CHMO_0002845c

waste managementc # Classes

URI http://purl.obolibrary.org/obo/CHMO_0002845
Super-classes obo:OBI_0000011c
Sub-classes obo:CHMO_0002832c

cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000000
Super-classes obo:BFO_0000040c
Sub-classes obo:CL_0000578c

cultured cellc # Classes

URI http://purl.obolibrary.org/obo/CL_0000010
Super-classes (ub50bL1079C22c or ub50bL1084C13c)
obo:CL_0000578c

experimentally modified cell in vitroc # Classes

URI http://purl.obolibrary.org/obo/CL_0000578
Super-classes obo:OBI_0000047c
obo:CL_0000000c
Restrictions obo:OBI_0000312op some obo:OBI_0000094c
Sub-classes obo:CL_0000010c

data use permissionc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000001
Super-classes obo:IAO_0000027c
Sub-classes obo:DUO_0000004c
obo:DUO_0000011c
obo:DUO_0000042c

obsolete consent code primary categoryc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000002
Super-classes oboInOwl:ObsoleteClassc

obsolete consent code secondary categoryc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000003
Super-classes oboInOwl:ObsoleteClassc

no restrictionc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000004
Description

Note: the NRES alternative term may be confusing as in the UK it also stands for National Research Ethics Service
Super-classes obo:DUO_0000001c

population origins or ancestry research prohibitedc # Classes

URI http://purl.obolibrary.org/obo/DUO_00000044
Super-classes obo:DUO_0000017c

obsolete general research use and clinical carec # Classes

URI http://purl.obolibrary.org/obo/DUO_0000005
Description

This term includes clinical care, which was not defined in the original consent codes paper. This term does not have a usage in our current use cases and we recommend using DUO:0000042, General Research Use, instead
Super-classes oboInOwl:ObsoleteClassc

health or medical or biomedical researchc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000006
Super-classes obo:DUO_0000042c
Sub-classes obo:DUO_0000007c

disease specific researchc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000007
Description

This term should be coupled with a term describing a disease from an ontology to specify the disease the restriction applies to.

DUO recommends MONDO be used, to provide the basis for automated evaluation. For more information see https://github.com/EBISPOT/DUO/blob/master/MONDO_Overview.md

Other resources, such as the Disease Ontology, HPO, SNOMED-CT or others, can also be used. When those other resources are being used, this may require an extra mapping step to leverage automated matching algorithms.
Super-classes obo:DUO_0000006c
Restrictions obo:DUO_0000010op some obo:MONDO_0000001c

population origins or ancestry research onlyc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000011
Super-classes obo:DUO_0000001c

research specific restrictionsc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000012
Super-classes obo:DUO_0000017c
Restrictions obo:DUO_0000010op some obo:topic_0003c

obsolete research use onlyc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000014
Description

Deprecated as GRU-CC was split into GRU and CC, so this is not applicable anymore as a qualifier of GRU-CC
Super-classes oboInOwl:ObsoleteClassc

no general methods researchc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000015
Super-classes obo:DUO_0000017c

genetic studies onlyc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000016
Super-classes obo:DUO_0000017c

data use modifierc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000017
Super-classes obo:IAO_0000027c
Sub-classes obo:DUO_0000016c
obo:DUO_0000026c
obo:DUO_0000020c
obo:DUO_0000018c
obo:DUO_0000043c
obo:DUO_0000019c
obo:DUO_0000015c
obo:DUO_0000029c
obo:DUO_0000028c
obo:DUO_0000025c
obo:DUO_0000024c
obo:DUO_0000021c
obo:DUO_0000012c
obo:DUO_0000027c
obo:DUO_0000022c
obo:DUO_00000044c

not for profit, non commercial use onlyc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000018
Super-classes obo:DUO_0000017c
Sub-classes obo:DUO_0000046c
obo:DUO_0000045c

publication requiredc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000019
Super-classes obo:DUO_0000017c

collaboration requiredc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000020
Description

This could be coupled with a string describing the primary study investigator(s).
Super-classes obo:DUO_0000017c

ethics approval requiredc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000021
Super-classes obo:DUO_0000017c

geographical restrictionc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000022
Description

This should be coupled with an ontology term describing the geographical location the restriction applies to.
Super-classes obo:DUO_0000017c
Restrictions obo:DUO_0000010op some obo:GAZ_00000448c

publication moratoriumc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000024
Description

This should be coupled with a date specified as ISO8601
Super-classes obo:DUO_0000017c

time limit on usec # Classes

URI http://purl.obolibrary.org/obo/DUO_0000025
Description

This should be coupled with an integer value indicating the number of months.
Super-classes obo:DUO_0000017c

user specific restrictionc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000026
Super-classes obo:DUO_0000017c

project specific restrictionc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000027
Super-classes obo:DUO_0000017c

institution specific restrictionc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000028
Super-classes obo:DUO_0000017c

return to database or resourcec # Classes

URI http://purl.obolibrary.org/obo/DUO_0000029
Super-classes obo:DUO_0000017c

method developmentc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000031
Super-classes obo:OBI_0000066c

population researchc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000032
Description

Should be paired with the an ontology term representing this population (e.g., xxx).
Super-classes obo:OBI_0000066c

ancestry researchc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000033
Super-classes obo:OBI_0000066c

age category researchc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000034
Description

Should be paired with the an ontology term representing this population (e.g., xxx).
Super-classes obo:OBI_0000066c

gender category researchc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000035
Description

Should be paired with the an ontology term representing this population (e.g., xxx).
Super-classes obo:OBI_0000066c

research controlc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000036
Super-classes obo:OBI_0000066c

biomedical researchc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000037
Super-classes obo:OBI_0000066c
Sub-classes obo:DUO_0000039c
obo:DUO_0000040c
obo:DUO_0000038c

genetic researchc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000038
Super-classes obo:DUO_0000037c

drug development researchc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000039
Super-classes obo:DUO_0000037c

disease category researchc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000040
Super-classes obo:DUO_0000037c

general research usec # Classes

URI http://purl.obolibrary.org/obo/DUO_0000042
Description

This includes but is not limited to: health/medical/biomedical purposes, fundamental biology research, the study of population origins or ancestry, statistical methods and algorithms development, and social-sciences research.
Super-classes obo:DUO_0000001c
Sub-classes obo:DUO_0000006c

clinical care usec # Classes

URI http://purl.obolibrary.org/obo/DUO_0000043
Description

Clinical Care is defined as Health care or services provided at home, in a healthcare facility or hospital. Data may be used for clinical decision making.
Super-classes obo:DUO_0000017c

not for profit organisation use onlyc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000045
Super-classes obo:DUO_0000018c

non-commercial use onlyc # Classes

URI http://purl.obolibrary.org/obo/DUO_0000046
Description

This indicates that data can be used by commercial organisations for research purposes, but not commercial purposes.
Super-classes obo:DUO_0000018c

videoc # Classes

URI http://purl.obolibrary.org/obo/ERO_0000333
Super-classes obo:IAO_0000098c

Anatomical clusterc # Classes

URI http://purl.obolibrary.org/obo/FMA_49443
Super-classes obo:FMA_67135c
Sub-classes obo:FMA_64989c

vocal foldc # Classes

URI http://purl.obolibrary.org/obo/FMA_55457
Super-classes obo:FMA_64854c

Subdivision of larynxc # Classes

URI http://purl.obolibrary.org/obo/FMA_64854
Super-classes obo:FMA_64989c
Sub-classes obo:FMA_55457c

Heterogeneous clusterc # Classes

URI http://purl.obolibrary.org/obo/FMA_64989
Super-classes obo:FMA_49443c
Sub-classes obo:FMA_64854c

Anatomical structurec # Classes

URI http://purl.obolibrary.org/obo/FMA_67135
Super-classes obo:FMA_67165c
Sub-classes obo:FMA_49443c

Material anatomical entityc # Classes

URI http://purl.obolibrary.org/obo/FMA_67165
Super-classes obo:BFO_0000040c
Sub-classes obo:FMA_67135c

geographic locationc # Classes

URI http://purl.obolibrary.org/obo/GAZ_00000448
Super-classes obo:BFO_0000029c

governmental organizationc # Classes

URI http://purl.obolibrary.org/obo/GEO_000000400
Super-classes obo:OBI_0000245c

female pregnancyc # Classes

URI http://purl.obolibrary.org/obo/GO_0007565
Super-classes obo:BFO_0000015c

conditional specificationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000001
Super-classes obo:IAO_0000033c
Sub-classes obo:ICO_0000249c
obo:IAO_0000055c
obo:IAO_0000034c
obo:ICO_0000247c

measurement unit labelc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000003
Super-classes obo:IAO_0000009c
Sub-classes obo:UO_0000001c
obo:UO_0000003c
obo:UO_0000002c
In range of obo:IAO_0000039op

objective specificationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000005
Super-classes obo:IAO_0000033c
Sub-classes obo:OBI_0000456c
obo:OBI_0000684c
obo:ICO_0000315c
obo:OBI_0000806c
obo:ICO_0000314c
In domain of obo:OBI_0000833op
In range of obo:OBI_0000417op

narrative objectc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000006
Super-classes obo:IAO_0000030c

action specificationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000007
Super-classes obo:IAO_0000033c

obsolete_artifactc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000008
Super-classes oboInOwl:ObsoleteClassc

datum labelc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000009
Super-classes obo:IAO_0000030c
Sub-classes obo:IAO_0000003c

softwarec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000010
Super-classes obo:IAO_0000104c
Sub-classes obo:IAO_0000591c
obo:IAO_0000594c
obo:IAO_0000593c
obo:IAO_0000595c
obo:IAO_0000592c

obsolete2_digital entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000012
Super-classes oboInOwl:ObsoleteClassc

journal articlec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000013
Super-classes obo:IAO_0000311c
obo:IAO_0000088c
Restrictions obo:OBI_0000312op only obo:IAO_0000444c
obo:OBI_0000312op some obo:IAO_0000444c

information carrierc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000015
Super-classes obo:BFO_0000019c

model numberc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000017
Super-classes obo:IAO_0000028c

obsolete_material_entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000018
Super-classes oboInOwl:ObsoleteClassc

obsolete2_binary digital entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000019
Super-classes oboInOwl:ObsoleteClassc

obsolete_unit of measurec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000024
Super-classes oboInOwl:ObsoleteClassc

programming languagec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000025
Super-classes obo:IAO_0000104c

data itemc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000027
Super-classes obo:IAO_0000030c
Sub-classes obo:IAO_0000100c
obo:IAO_0000102c
obo:IAO_0000400c
obo:ICO_0000044c
obo:OGMS_0000014c
obo:DUO_0000017c
obo:DUO_0000001c
obo:IAO_0000140c
obo:OBI_0001404c
obo:ICO_0000035c
obo:IAO_0000109c
In range of obo:OBI_0000124op

symbolc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000028
Super-classes obo:IAO_0000030c
Sub-classes obo:IAO_0000577c
obo:ICO_0000111c
obo:IAO_0000029c
obo:IAO_0000132c
obo:IAO_0000017c
obo:IAO_0000129c
obo:IAO_0000131c

numeralc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000029
Super-classes obo:IAO_0000028c
Sub-classes obo:IAO_0000031c

information content entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000030
Super-classes obo:BFO_0000031c
Restrictions obo:IAO_0000136op some obo:BFO_0000001c
Sub-classes obo:topic_0003c
obo:IAO_0020001c
obo:ICO_0000022c
obo:IAO_0020002c
obo:IAO_0000308c
obo:IAO_0000009c
obo:OBI_0001909c
obo:ICO_0000101c
obo:IAO_0000006c
obo:ICO_0000113c
obo:IAO_0000314c
cco:DescriptiveInformationContentEntityc
obo:IAO_0000028c
obo:IAO_0000300c
obo:OBI_0001933c
obo:IAO_0000027c
obo:IAO_0020022c
obo:ICO_0000256c
obo:IAO_0000310c
obo:IAO_0000033c
obo:ICO_0000222c
obo:IAO_0020000c
obo:IAO_0000429c
In domain of obo:IAO_0000136op
obo:OBI_0001938op
obo:IAO_0000219op
In range of obo:IAO_0000235op

integer numeralc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000031
Super-classes obo:IAO_0000029c

scalar measurement datumc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000032
Super-classes obo:IAO_0000109c
Restrictions obo:IAO_0000039op min 1
obo:OBI_0001938op some obo:OBI_0001931c
obo:IAO_0000004fp min 1
Sub-classes obo:IAO_0000416c
obo:IAO_0000414c
obo:IAO_0000408c
In domain of obo:IAO_0000004fp

directive information entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000033
Super-classes obo:IAO_0000030c
Restrictions obo:IAO_0000136op some obo:BFO_0000017c
Sub-classes obo:ICO_0000246c
obo:ICO_0000189c
obo:ICO_0000255c
obo:ICO_0000310c
obo:ICO_0000250c
obo:ICO_0000016c
obo:IAO_0000005c
obo:ICO_0000267c
obo:ICO_0000316c
obo:ICO_0000307c
obo:IAO_0000098c
obo:ICO_0000295c
obo:ICO_0000239c
obo:ICO_0000258c
obo:ICO_0000240c
obo:IAO_0000104c
obo:ICO_0000268c
obo:ICO_0000243c
obo:ICO_0000273c
obo:IAO_0000001c
obo:ICO_0000293c
obo:ICO_0000427c
obo:ICO_0000248c
obo:ICO_0000242c
obo:ICO_0000252c
obo:IAO_0000096c
obo:ICO_0000294c
obo:OBI_0500026c
obo:ICO_0000280c
obo:ICO_0000041c
obo:ICO_0000059c
obo:ICO_0000312c
obo:IAO_0000007c
obo:ICO_0000009c

time triggerc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000034
Super-classes obo:IAO_0000001c

obsolete_study interpretationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000035
Super-classes oboInOwl:ObsoleteClassc

dot plotc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000037
Super-classes obo:IAO_0000038c

graphc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000038
Super-classes obo:IAO_0000309c
Sub-classes obo:IAO_0000573c
obo:IAO_0000180c
obo:IAO_0000179c
obo:IAO_0000037c
obo:IAO_0000057c
obo:IAO_0000181c
obo:IAO_0000079c
obo:IAO_0000184c
obo:IAO_0000183c

obsolete2_text based digital entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000047
Super-classes oboInOwl:ObsoleteClassc

rulec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000055
Super-classes obo:IAO_0000001c
Sub-classes obo:ICO_0000237c
obo:ICO_0000236c
obo:ICO_0000238c

contour plotc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000057
Super-classes obo:IAO_0000038c

obsolete2_report figurec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000059
Super-classes oboInOwl:ObsoleteClassc

algorithmc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000064
Super-classes obo:IAO_0000104c
Sub-classes obo:IAO_0000065c

software interpreterc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000065
Super-classes obo:IAO_0000064c

curation status specificationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000078
Super-classes obo:IAO_0000102c
Members obo:IAO_0000121
obo:IAO_0000120
obo:IAO_0000428
obo:IAO_0000002
obo:IAO_0000125
obo:IAO_0000122
obo:IAO_0000124
obo:IAO_0000423
obo:IAO_0000123

density plotc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000079
Super-classes obo:IAO_0000038c

reportc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000088
Super-classes obo:IAO_0000310c
Sub-classes obo:IAO_0000013c

obsolete_report elementc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000091
Super-classes oboInOwl:ObsoleteClassc

obsolete2_binary executablec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000093
Super-classes oboInOwl:ObsoleteClassc

source code modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000096
Super-classes obo:IAO_0000033c

obsolete_report tablec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000097
Super-classes oboInOwl:ObsoleteClassc

data format specificationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000098
Super-classes obo:IAO_0000033c
Sub-classes obo:ERO_0000333c

data setc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000100
Super-classes obo:IAO_0000027c
Sub-classes obo:IAO_0000584c
obo:IAO_0000579c

imagec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000101
Super-classes obo:IAO_0000308c
Sub-classes obo:IAO_0000185c

data about an ontology partc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000102
Super-classes obo:IAO_0000027c
Sub-classes obo:IAO_0000078c
obo:IAO_0000409c
obo:IAO_8000000c
obo:IAO_0000225c

plan specificationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000104
Description

2/3/2009 Comment from OBI review.

Action specification not well enough specified. Conditional specification not well enough specified. Question whether all plan specifications have objective specifications.

Request that IAO either clarify these or change definitions not to use them
Super-classes obo:IAO_0000033c
Restrictions obo:BFO_0000051op some obo:IAO_0000005c
obo:BFO_0000051op some obo:IAO_0000007c
Sub-classes obo:IAO_0000647c
obo:IAO_0000064c
obo:IAO_0000010c
obo:OBI_0500000c
obo:IAO_0000025c
obo:OBI_0000272c

obsolete2_digital documentc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000105
Super-classes oboInOwl:ObsoleteClassc

measurement datumc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000109
Super-classes obo:IAO_0000027c
Restrictions obo:OBI_0001938op some obo:OBI_0001933c
Sub-classes obo:IAO_0000032c
obo:IAO_0000582c
obo:APOLLO_SV_00000032c
obo:ICO_0000087c
In domain of obo:IAO_0000221op

obsolete_identifierc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000128
Super-classes oboInOwl:ObsoleteClassc

version numberc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000129
Super-classes obo:IAO_0000028c

serial numberc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000131
Super-classes obo:IAO_0000028c

lot numberc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000132
Super-classes obo:IAO_0000028c

setting datumc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000140
Super-classes obo:IAO_0000027c

obsolete_digital qualityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000141
Super-classes oboInOwl:ObsoleteClassc

conclusion textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000144
Super-classes obo:IAO_0000300c

material information bearerc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000178
Super-classes obo:BFO_0000040c
Sub-classes obo:IAO_0020005c
obo:IAO_0000186c

histogramc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000179
Super-classes obo:IAO_0000038c

heatmapc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000180
Super-classes obo:IAO_0000038c

Venn diagramc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000181
Super-classes obo:IAO_0000038c

obsolete_survival curvec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000182
Super-classes oboInOwl:ObsoleteClassc

dendrogramc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000183
Super-classes obo:IAO_0000038c

scatter plotc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000184
Super-classes obo:IAO_0000038c

photographc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000185
Super-classes obo:IAO_0000101c

photographic printc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000186
Super-classes obo:IAO_0000178c

obsolescence reason specificationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000225
Super-classes obo:IAO_0000102c
Members obo:IAO_0000103
obo:IAO_0000227
obo:IAO_0000228
obo:IAO_0000229
obo:IAO_0000226

textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000300
Super-classes obo:IAO_0000030c
Sub-classes obo:IAO_0000643c
obo:IAO_0000301c
obo:IAO_0000590c
obo:IAO_0000422c
obo:IAO_0000642c
obo:OBI_0001622c
obo:IAO_0000621c
obo:IAO_0000636c
obo:IAO_0000629c
obo:IAO_0000624c
obo:IAO_0000304c
obo:IAO_0000640c
obo:IAO_0000617c
obo:IAO_0000605c
obo:ICO_0000141c
obo:IAO_0000306c
obo:IAO_0000415c
obo:IAO_0000638c
obo:IAO_0000608c
obo:IAO_0000305c
obo:IAO_0000303c
obo:IAO_0000632c
obo:IAO_0000628c
obo:IAO_0000610c
obo:IAO_0000619c
obo:ICO_0000171c
obo:IAO_0000614c
obo:IAO_0000144c
obo:IAO_0000612c
obo:IAO_0000626c

citationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000301
Super-classes obo:IAO_0000300c
Restrictions obo:IAO_0000136op some obo:IAO_0000310c

author identificationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000302
Super-classes obo:IAO_0000590c
Sub-classes sio:SIO_000184c

institutional identificationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000303
Super-classes obo:IAO_0000300c

captionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000304
Super-classes obo:IAO_0000300c
Restrictions obo:IAO_0000136op some obo:IAO_0000308c

document titlec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000305
Super-classes obo:IAO_0000300c
Sub-classes obo:IAO_0000329c

tablec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000306
Super-classes obo:IAO_0000300c
Sub-classes obo:IAO_0000307c
obo:IAO_0000328c
obo:IAO_0000327c

table of abbreviationsc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000307
Super-classes obo:IAO_0000306c

figurec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000308
Super-classes obo:IAO_0000030c
Sub-classes obo:IAO_0000309c
obo:IAO_0000101c

diagramc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000309
Super-classes obo:IAO_0000308c
Sub-classes obo:IAO_0000038c

documentc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000310
Super-classes obo:IAO_0000030c
Sub-classes obo:IAO_0000311c
obo:ICO_0000085c
obo:IAO_0000445c
obo:OMIABIS_0001026c
obo:IAO_0000313c
obo:NCIT_C70800c
obo:OBI_0001000c
obo:ICO_0000233c
obo:IAO_0000088c
obo:IAO_0021007c
obo:APOLLO_SV_00000522c
obo:ICO_0000290c
obo:OBI_0000272c
obo:IAO_0020020c

publicationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000311
Description

Revisit the term in Octorber 2020. Improve the defintion.
Super-classes obo:IAO_0000310c
Sub-classes obo:IAO_0000312c
obo:IAO_0000013c

publication about an investigationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000312
Super-classes obo:IAO_0000311c
Restrictions obo:IAO_0000136op some obo:OBI_0000066c

patentc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000313
Super-classes obo:IAO_0000310c

document partc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000314
Super-classes obo:IAO_0000030c
Restrictions obo:BFO_0000050op some obo:IAO_0000310c
Sub-classes obo:IAO_0000322c
obo:IAO_0000644c
obo:IAO_0000316c
obo:IAO_0000324c
obo:IAO_0000634c
obo:IAO_0000330c
obo:ICO_0000019c
obo:IAO_0000319c
obo:ICO_0000012c
obo:IAO_0000613c
obo:IAO_0000623c
obo:IAO_0000645c
obo:IAO_0000609c
obo:IAO_0000627c
obo:IAO_0000639c
obo:IAO_0000703c
obo:IAO_0000615c
obo:IAO_0000630c
obo:IAO_0000611c
obo:IAO_0000318c
obo:IAO_0000635c
obo:IAO_0000315c
obo:IAO_0000641c
obo:IAO_0000317c
obo:ICO_0000011c
obo:IAO_0000325c
obo:IAO_0000622c
obo:IAO_0000616c
obo:IAO_0000701c
obo:IAO_0000620c
obo:IAO_0000618c
obo:IAO_0000631c
obo:IAO_0000637c
obo:IAO_0000326c
obo:IAO_0000705c
obo:IAO_0000606c
obo:IAO_0000625c
obo:IAO_0000323c
obo:IAO_0000321c
obo:IAO_0000633c
obo:IAO_0000607c
obo:ICO_0000007c
obo:IAO_0000320c

abstractc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000315
Super-classes obo:IAO_0000314c
Restrictions obo:IAO_0000136op some obo:IAO_0000310c
Sub-classes obo:IAO_0000707c

introduction to a publication about an investigationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000316
Super-classes obo:IAO_0000314c
Restrictions obo:IAO_0000136op some obo:IAO_0000005c

methods sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000317
Super-classes obo:IAO_0000314c
Restrictions obo:IAO_0000136op some obo:OBI_0500000c
Sub-classes obo:IAO_0000704c

results sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000318
Super-classes obo:IAO_0000314c
Restrictions obo:IAO_0000136op some obo:OBI_0000471c
Sub-classes obo:IAO_0000702c

discussion section of a publication about an investigationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000319
Super-classes obo:IAO_0000314c

references sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000320
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000301c

author listc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000321
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000302c

institution listc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000322
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000303c

author contributions sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000323
Super-classes obo:IAO_0000314c

acknowledgements sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000324
Super-classes obo:IAO_0000314c

footnotec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000325
Super-classes obo:IAO_0000314c
Restrictions obo:IAO_0000136op some obo:IAO_0000314c

supplementary material to a documentc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000326
Super-classes obo:IAO_0000314c

table of contentsc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000327
Super-classes obo:IAO_0000306c

table of figuresc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000328
Super-classes obo:IAO_0000306c

running titlec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000329
Super-classes obo:IAO_0000305c

copyright sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000330
Super-classes obo:IAO_0000314c

cartesian spatial coordinate datumc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000400
Super-classes obo:IAO_0000027c
Restrictions obo:IAO_0000407op exactly 1
obo:IAO_0000219op some obo:BFO_0000018c
Sub-classes obo:IAO_0000403c
obo:IAO_0000402c
obo:IAO_0000401c
In domain of obo:IAO_0000406fp
obo:IAO_0000405fp
obo:IAO_0000404fp
obo:IAO_0000407op

one dimensional cartesian spatial coordinate datumc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000401
Super-classes obo:IAO_0000400c
Restrictions obo:IAO_0000219op some (obo:BFO_0000018c and ub50bL3233C17c)
obo:IAO_0000404fp exactly 1

two dimensional cartesian spatial coordinate datumc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000402
Super-classes obo:IAO_0000400c
Restrictions obo:IAO_0000219op some (obo:BFO_0000018c and ub50bL3258C17c)
obo:IAO_0000406fp exactly 1
obo:IAO_0000404fp exactly 1

three dimensional cartesian spatial coordinate datumc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000403
Super-classes obo:IAO_0000400c
Restrictions obo:IAO_0000406fp exactly 1
obo:IAO_0000219op some (obo:BFO_0000018c and ub50bL3287C17c)
obo:IAO_0000405fp exactly 1
obo:IAO_0000404fp exactly 1

length measurement datumc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000408
Super-classes obo:IAO_0000032c
Restrictions obo:IAO_0000221op some obo:PATO_0000122c
obo:IAO_0000039op some obo:UO_0000001c

denotator typec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000409
Super-classes obo:IAO_0000102c
Members obo:IAO_0000420
obo:IAO_0000410
obo:IAO_0000421

mass measurement datumc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000414
Super-classes obo:IAO_0000032c
(ub50bL3414C29c and ub50bL3419C13c)

hypothesis textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000415
Super-classes obo:IAO_0000300c

time measurement datumc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000416
Super-classes obo:IAO_0000032c
(ub50bL3449C29c and ub50bL3454C13c)
In domain of obo:IAO_0000413op
In range of obo:IAO_0000581op

postal addressc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000422
Super-classes obo:IAO_0000300c
Restrictions obo:IAO_0000136op some obo:GAZ_00000448c

email addressc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000429
Super-classes obo:IAO_0000030c

author rolec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000442
Super-classes obo:BFO_0000023c

data item extraction from journal articlec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000443
Super-classes obo:OBI_0000011c
Restrictions obo:OBI_0000293op some obo:IAO_0000013c
obo:OBI_0000299op some obo:IAO_0000027c

publishing processc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000444
Super-classes obo:OBI_0000011c

document in preparation for publicationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000445
Super-classes obo:IAO_0000310c

documentingc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000572
Super-classes obo:OBI_0000011c
Restrictions obo:OBI_0000299op some obo:IAO_0000310c
obo:OBI_0000293op some obo:IAO_0000030c

line graphc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000573
Super-classes obo:IAO_0000038c

assigning a centrally registered identifierc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000574
Super-classes obo:OBI_0000011c
Restrictions obo:RO_0000057op some obo:IAO_0000579c
obo:OBI_0000299op some obo:IAO_0000577c

associating information with a centrally registered identifier in its registryc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000575
Super-classes obo:OBI_0000011c
Restrictions obo:OBI_0000293op some obo:IAO_0000577c
obo:OBI_0000293op some obo:IAO_0000030c
obo:RO_0000057op some obo:IAO_0000579c

obsolete_establishing a CRID registryc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000576
Super-classes oboInOwl:ObsoleteClassc

centrally registered identifier symbolc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000577
Super-classes obo:IAO_0000028c
Restrictions obo:BFO_0000050op some obo:IAO_0000578c

centrally registered identifierc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000578
Super-classes obo:IAO_0020000c
Restrictions obo:BFO_0000051op some ()
obo:BFO_0000051op some obo:IAO_0000577c

centrally registered identifier registryc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000579
Super-classes obo:IAO_0000100c

looking up a centrally registered identifierc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000580
Super-classes obo:OBI_0000011c
Restrictions obo:RO_0000057op some obo:IAO_0000579c
obo:OBI_0000299op some obo:IAO_0000030c
obo:OBI_0000293op some obo:IAO_0000577c

time stamped measurement datumc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000582
Super-classes obo:IAO_0000109c
(ub50bL3796C29c and ub50bL3801C13c)
In domain of obo:IAO_0000581op
obo:IAO_0000583op

time sampled measurement data setc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000584
Super-classes obo:IAO_0000100c
Restrictions obo:BFO_0000051op some obo:IAO_0000582c

written namec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000590
Super-classes obo:IAO_0000300c
Sub-classes obo:IAO_0000302c

software methodc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000591
Super-classes obo:IAO_0000010c

software modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000592
Super-classes obo:IAO_0000010c

software libraryc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000593
Super-classes obo:IAO_0000010c

software applicationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000594
Super-classes obo:IAO_0000010c

software scriptc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000595
Super-classes obo:IAO_0000010c

abbreviation textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000605
Super-classes obo:IAO_0000300c

abbreviations sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000606
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000605c

author information sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000607
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000608c

author information textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000608
Super-classes obo:IAO_0000300c

author summary sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000609
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000610c

author summary textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000610
Super-classes obo:IAO_0000300c

availability sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000611
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000612c

availability textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000612
Super-classes obo:IAO_0000300c

case report sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000613
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000614c

case report textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000614
Super-classes obo:IAO_0000300c

conclusion sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000615
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000144c

conflict of interest sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000616
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000617c

conflict of interest textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000617
Super-classes obo:IAO_0000300c

consent sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000618
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000619c

consent textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000619
Super-classes obo:IAO_0000300c

ethical approval sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000620
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000621c

ethical approval textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000621
Super-classes obo:IAO_0000300c
Restrictions obo:IAO_0000136op some obo:OBI_0500000c

figures sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000622
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000308c

funding source declaration sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000623
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000624c

funding source declaration textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000624
Super-classes obo:IAO_0000300c

future directions sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000625
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000626c

future directions textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000626
Super-classes obo:IAO_0000300c

genome announcement sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000627
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000628c

genome announcement textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000628
Super-classes obo:IAO_0000300c

keyword textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000629
Super-classes obo:IAO_0000300c

keywords sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000630
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000629c

study limitations sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000631
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000632c
obo:IAO_0000136op some obo:OBI_0500000c
Sub-classes obo:IAO_0000706c

study limitations textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000632
Super-classes obo:IAO_0000300c

materials sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000633
Super-classes obo:IAO_0000314c

notes sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000634
Super-classes obo:IAO_0000314c

patients sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000635
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000636c

patients textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000636
Super-classes obo:IAO_0000300c

pre-publication history sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000637
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000638c

pre-publication history textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000638
Super-classes obo:IAO_0000300c

related work sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000639
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000640c

related work textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000640
Super-classes obo:IAO_0000300c

requirements sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000641
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000642c

requirements textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000642
Super-classes obo:IAO_0000300c

statistical analysis textual entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000643
Super-classes obo:IAO_0000300c

statistical analysis sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000644
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000643c

tables sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000645
Super-classes obo:IAO_0000314c
Restrictions obo:BFO_0000051op some obo:IAO_0000306c

postal codec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000646
Super-classes obo:IAO_0020000c
Sub-classes obo:IAO_0000648c

Postal delivery routec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000647
Super-classes obo:IAO_0000104c

zone improvement plan codec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000648
Super-classes obo:IAO_0000646c

database extract, transform, and load processc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000650
Is Defined By https://github.com/information-artifact-ontology/IAO
Super-classes obo:OBI_0000011c
Restrictions obo:OBI_0000293op some obo:IAO_0000030c
obo:OBI_0000299op some obo:IAO_0000030c

descriptive data sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000701
Super-classes obo:IAO_0000314c

additional results sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000702
Super-classes obo:IAO_0000318c

research participants sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000703
Super-classes obo:IAO_0000314c

measurement methods sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000704
Super-classes obo:IAO_0000317c

research settings sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000705
Super-classes obo:IAO_0000314c

study bias sectionc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000706
Super-classes obo:IAO_0000631c

graphical abstractc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000707
Super-classes obo:IAO_0000315c

identifierc # Classes

URI http://purl.obolibrary.org/obo/IAO_0020000
Description

Sep 29, 2016: The current definition has been amended from the previous version: "A proper name is an information content entity that is the outcome of a dubbing process and is used to refer to one instance of entity shared by a group of people to refer to that individual entity." to more accuratly reflect the necessary and sufficient condition on the class. (MB)
Super-classes obo:IAO_0000030c
Sub-classes obo:IAO_0020015c
obo:IAO_0000646c
obo:IAO_0000578c
In domain of obo:IAO_0020013op

graphemec # Classes

URI http://purl.obolibrary.org/obo/IAO_0020001
Super-classes obo:IAO_0000030c

utterancec # Classes

URI http://purl.obolibrary.org/obo/IAO_0020002
Super-classes obo:IAO_0000030c

mechanical wave qualityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0020003
Super-classes obo:BFO_0000019c

writing qualityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0020004
Super-classes obo:BFO_0000019c

writing bearerc # Classes

URI http://purl.obolibrary.org/obo/IAO_0020005
Super-classes obo:IAO_0000178c

portion of energyc # Classes

URI http://purl.obolibrary.org/obo/IAO_0020006
Super-classes obo:BFO_0000004c
Sub-classes obo:IAO_0020007c

sound energyc # Classes

URI http://purl.obolibrary.org/obo/IAO_0020007
Super-classes obo:IAO_0020006c
Sub-classes obo:IAO_0020008c

utterance energyc # Classes

URI http://purl.obolibrary.org/obo/IAO_0020008
Super-classes obo:IAO_0020007c

oscillatingc # Classes

URI http://purl.obolibrary.org/obo/IAO_0020009
Super-classes obo:BFO_0000015c

dubbing processc # Classes

URI http://purl.obolibrary.org/obo/IAO_0020010
Super-classes obo:OBI_0000011c

utterance processc # Classes

URI http://purl.obolibrary.org/obo/IAO_0020011
Super-classes obo:OBI_0000011c

personal namec # Classes

URI http://purl.obolibrary.org/obo/IAO_0020015
Description

Sep 29, 2016: The comment that including the wikipedia definition of personal name is not to be interpreted in a way that restricts this class to only contain strings of letters. A numerical or alphanumerical identifier that denotes a human is being is a personal name, too. (MB)
Super-classes obo:IAO_0020000c
Sub-classes obo:IAO_0020017c
obo:IAO_0020016c

given namec # Classes

URI http://purl.obolibrary.org/obo/IAO_0020016
Super-classes obo:IAO_0020015c
Restrictions obo:BFO_0000050op some obo:IAO_0020015c

family namec # Classes

URI http://purl.obolibrary.org/obo/IAO_0020017
Super-classes obo:IAO_0020015c
Restrictions obo:BFO_0000050op some obo:IAO_0020015c

code setc # Classes

URI http://purl.obolibrary.org/obo/IAO_0020020
Description

Does not imply absence vs. presence of any taxonomy.
Super-classes obo:IAO_0000310c
Restrictions obo:BFO_0000051op some obo:IAO_0020000c

identity documentc # Classes

URI http://purl.obolibrary.org/obo/IAO_0020021

documented identityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0020022
Description

is an aggregate of ICEs also an ICE? yes Is part_of the appropriate relation to use for data items and documented identities?
Super-classes obo:IAO_0000030c
(ub50bL5084C29c and ub50bL5089C13c and ub50bL5096C13c)

authenticationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0020023
Super-classes obo:BFO_0000015c
(obo:BFO_0000015c and ub50bL5114C13c and ub50bL5119C13c and ub50bL5124C13c)

credential rolec # Classes

URI http://purl.obolibrary.org/obo/IAO_0020024
Super-classes obo:BFO_0000023c

obsolete_claimc # Classes

URI http://purl.obolibrary.org/obo/IAO_0021000
Super-classes oboInOwl:ObsoleteClassc

deontic document actc # Classes

URI http://purl.obolibrary.org/obo/IAO_0021001
Super-classes obo:IAO_0021009c

obsolete_document actc # Classes

URI http://purl.obolibrary.org/obo/IAO_0021002
Super-classes oboInOwl:ObsoleteClassc

social actc # Classes

URI http://purl.obolibrary.org/obo/IAO_0021003
Super-classes obo:OBI_0000011c
Sub-classes obo:IAO_0021009c
obo:ICO_0000195c
obo:ICO_0000046c
obo:ICO_0000257c
obo:ICO_0000005c
obo:ICO_0000269c
obo:IAO_0021102c
obo:ICO_0000197c
obo:ICO_0000221c
obo:ICO_0000306c

obsolete_socio-legal generically dependent continuantc # Classes

URI http://purl.obolibrary.org/obo/IAO_0021004
Super-classes oboInOwl:ObsoleteClassc

obsolete_deontic declarationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0021005
Super-classes oboInOwl:ObsoleteClassc

obligee rolec # Classes

URI http://purl.obolibrary.org/obo/IAO_0021006
Super-classes obo:BFO_0000023c

document act input documentc # Classes

URI http://purl.obolibrary.org/obo/IAO_0021007
Super-classes obo:IAO_0000310c
Sub-classes obo:ICO_0000001c

deontic rolec # Classes

URI http://purl.obolibrary.org/obo/IAO_0021008
Super-classes obo:BFO_0000023c
Sub-classes obo:ICO_0000215c
obo:ICO_0000199c
In range of obo:IAO_0021011op

deontic declarationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0021009
Super-classes obo:IAO_0021003c
Sub-classes obo:IAO_0021001c
In domain of obo:IAO_0021011op

obsolete_obligationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0021010
Super-classes oboInOwl:ObsoleteClassc

obsolete_declaration executive rolec # Classes

URI http://purl.obolibrary.org/obo/IAO_0021014
Super-classes oboInOwl:ObsoleteClassc

obsolete_document template creator rolec # Classes

URI http://purl.obolibrary.org/obo/IAO_0021015
Description

not that the "template" does not need to be a template at all. It can be a document that is getting stamped and signed and by these acts creating some socio-legal generically dependent continuants.
Super-classes oboInOwl:ObsoleteClassc

obsolete_claimant rolec # Classes

URI http://purl.obolibrary.org/obo/IAO_0021017
Super-classes oboInOwl:ObsoleteClassc

obsolete_obligator rolec # Classes

URI http://purl.obolibrary.org/obo/IAO_0021018
Super-classes oboInOwl:ObsoleteClassc

obsolete_declaration targetc # Classes

URI http://purl.obolibrary.org/obo/IAO_0021020
Super-classes oboInOwl:ObsoleteClassc

document act template creator rolec # Classes

URI http://purl.obolibrary.org/obo/IAO_0021021
Super-classes obo:BFO_0000023c
Restrictions obo:RO_0000052op some (ub50bL5366C33c and ub50bL5374C17c)

deontic declaration performer rolec # Classes

URI http://purl.obolibrary.org/obo/IAO_0021022
Super-classes obo:BFO_0000023c

obsoleted_document act targetc # Classes

URI http://purl.obolibrary.org/obo/IAO_0021030
Super-classes oboInOwl:ObsoleteClassc

document act performer rolec # Classes

URI http://purl.obolibrary.org/obo/IAO_0021031
Super-classes (ub50bL5425C29c and ub50bL5437C13c)
obo:BFO_0000023c

standing declarationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0021102
Super-classes obo:IAO_0021003c

obligor rolec # Classes

URI http://purl.obolibrary.org/obo/IAO_0021300
Super-classes obo:BFO_0000023c

ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000000
Super-classes obo:IAO_0000102c
Sub-classes obo:IAO_8000001c
obo:IAO_8000003c
obo:IAO_8000013c
obo:IAO_8000014c
obo:IAO_8000006c
obo:IAO_8000002c
obo:IAO_8000004c

base ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000001
Super-classes obo:IAO_8000000c

editors ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000002
Super-classes obo:IAO_8000000c

main release ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000003
Super-classes obo:IAO_8000000c

bridge ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000004
Super-classes obo:IAO_8000000c
Sub-classes obo:IAO_8000016c

import ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000005
Super-classes obo:IAO_8000006c
Sub-classes obo:IAO_8000011c

subset ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000006
Super-classes obo:IAO_8000000c
Sub-classes obo:IAO_8000012c
obo:IAO_8000017c
obo:IAO_8000009c
obo:IAO_8000008c
obo:IAO_8000010c
obo:IAO_8000007c
obo:IAO_8000005c

curation subset ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000007
Super-classes obo:IAO_8000006c

analysis subset ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000008
Super-classes obo:IAO_8000006c

single layer subset ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000009
Super-classes obo:IAO_8000006c

exclusion subset ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000010
Super-classes obo:IAO_8000006c

external import ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000011
Super-classes obo:IAO_8000005c

species subset ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000012
Super-classes obo:IAO_8000006c

reasoned ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000013
Super-classes obo:IAO_8000000c

generated ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000014
Super-classes obo:IAO_8000000c
Sub-classes obo:IAO_8000015c

template generated ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000015
Super-classes obo:IAO_8000014c

taxonomic bridge ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000016
Super-classes obo:IAO_8000004c

ontology module subsetted by expressivityc # Classes

URI http://purl.obolibrary.org/obo/IAO_8000017
Super-classes obo:IAO_8000006c
Sub-classes obo:IAO_8000019c
obo:IAO_8000018c

obo basic subset ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000018
Super-classes obo:IAO_8000017c

ontology module subsetted by OWL profilec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000019
Super-classes obo:IAO_8000017c
Sub-classes obo:IAO_8000020c

EL++ ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000020
Super-classes obo:IAO_8000019c

obsolete NEEDS_REVIEWc # Classes

URI http://purl.obolibrary.org/obo/ICODEV_0000065
Super-classes oboInOwl:ObsoleteClassc

obsolete Proposed RUBRIC Classesc # Classes

URI http://purl.obolibrary.org/obo/ICODEV_0000066
Description

Classes proposed for RUBRIC refactoring (non-exhaustive)
Super-classes oboInOwl:ObsoleteClassc

informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000001
Super-classes obo:IAO_0021007c
Sub-classes obo:ICO_0000034c
obo:ICO_0000213c
obo:ICO_0000014c
obo:ICO_0000214c
obo:ICO_0000015c
obo:ICO_0000033c
obo:ICO_0000104c
obo:ICO_0000031c
obo:ICO_0000029c
obo:ICO_0000023c
obo:ICO_0000030c
obo:ICO_0000013c
obo:ICO_0000061c
obo:ICO_0000138c
obo:ICO_0000099c
obo:ICO_0000129c
obo:ICO_0000024c
obo:ICO_0000018c
In domain of obo:ICO_0000130op

designing an informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000002
Super-classes obo:OBI_0000011c

validating an informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000003
Super-classes obo:OBI_0000011c

approving an informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000004
Super-classes obo:OBI_0000011c

signing an informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000005
Description

Signing here does not mean that we have to sign with a pen. It may happen in terms of signing a piece of a paper or an electronic form.
Super-classes obo:IAO_0021003c

informed consent regulatory bodyc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000006
Super-classes obo:OBI_0000245c

part of informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000007
Super-classes obo:IAO_0000314c

description of participation riskc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000008
Super-classes cco:DescriptiveInformationContentEntityc

recontact method directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000009
Super-classes obo:IAO_0000033c

option to checkc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000010
Super-classes obo:ICO_0000242c

required informed consent elementc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000011
Super-classes obo:IAO_0000314c

optional informed consent elementc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000012
Super-classes obo:IAO_0000314c

informed consent form for human biospecimen collectionc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000013
Super-classes obo:ICO_0000001c

informed consent form for human blood sample collectionc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000014
Super-classes obo:ICO_0000001c

signed informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000015
Super-classes obo:ICO_0000001c

allowed research scope in informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000016
Super-classes obo:IAO_0000033c

obsolete fully signed informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000017
Super-classes oboInOwl:ObsoleteClassc

informed consent form signed by human subjectc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000018
Super-classes obo:ICO_0000001c

signature sectionc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000019
Super-classes obo:IAO_0000314c
Sub-classes obo:ICO_0000021c
obo:ICO_0000020c

human subject signature section in informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000020
Super-classes obo:ICO_0000019c

investigator signature section in informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000021
Super-classes obo:ICO_0000019c

temporal region identifierc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000022
Super-classes obo:IAO_0000030c
Restrictions obo:IAO_0020012op some obo:BFO_0000008c
Sub-classes obo:ICO_0000037c
obo:ICO_0000027c
obo:ICO_0000036c
obo:ICO_0000038c
obo:ICO_0000025c
obo:ICO_0000039c

completely filled informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000023
Super-classes obo:ICO_0000001c

partially filled informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000024
Super-classes obo:ICO_0000001c

effective date specification in informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000025
Super-classes obo:ICO_0000022c

obsolete expiration date specification in informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000026
Super-classes oboInOwl:ObsoleteClassc

starting date specification in informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000027
Super-classes obo:ICO_0000022c

obsolete human blood sample collection sectionc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000028
Super-classes oboInOwl:ObsoleteClassc

informed consent form for clinical studyc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000029
Super-classes obo:ICO_0000001c

informed consent form for storage and future use of unused samplesc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000030
Super-classes obo:ICO_0000001c

informed consent form for qualitative studyc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000031
Super-classes obo:ICO_0000001c

informed assent form for child or minorc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000032
Super-classes obo:ICO_0000085c

informed consent form for qualitative research involving childrenc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000033
Super-classes obo:ICO_0000001c

informed consent form for clinical research involving childrenc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000034
Super-classes obo:ICO_0000001c

date specification in informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000035
Super-classes obo:IAO_0000027c

informed consent form signing datec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000036
Super-classes obo:ICO_0000022c

project duration specificationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000037
Super-classes obo:ICO_0000022c

project starting date specificationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000038
Super-classes obo:ICO_0000022c

project end date specificationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000039
Super-classes obo:ICO_0000022c

human subject consenterc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000040
Super-classes obo:NCBITaxon_9606c

informed consent rule specificationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000041
Super-classes obo:IAO_0000033c
Sub-classes obo:ICO_0000042c
obo:ICO_0000043c

obligation informed consent rule specificationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000042
Super-classes obo:ICO_0000041c

permission informed consent rule specificationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000043
Super-classes obo:ICO_0000041c

informed consent identification codec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000044
Super-classes obo:IAO_0000027c

investigator rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000045
Super-classes obo:BFO_0000023c

act of authorizingc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000046
Super-classes obo:IAO_0021003c
Sub-classes obo:ICO_0000074c

human populationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000047
Super-classes obo:OBI_0000181c

nonprofit organizationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000048
Super-classes obo:OBI_0000245c

profit organizationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000049
Super-classes obo:OBI_0000245c

obsolete animal research investigationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000050
Super-classes oboInOwl:ObsoleteClassc

cancer research investigationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000051
Super-classes obo:OBI_0000066c

obsolete metastatic melanoma research investigationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000052
Super-classes oboInOwl:ObsoleteClassc

drug testing investigationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000053
Super-classes obo:OBI_0000066c

human research investigationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000054
Super-classes obo:OBI_0000066c

obsolete genetic studyc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000055
Super-classes oboInOwl:ObsoleteClassc

nonprofit research investigationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000056
Super-classes obo:OBI_0000066c
Restrictions obo:ICO_0000224op some obo:ICO_0000048c

for-profit research investigationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000057
Super-classes obo:OBI_0000066c
Restrictions obo:ICO_0000224op some obo:ICO_0000049c

investigation periodc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000058
Super-classes obo:BFO_0000038c

ethics directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000059
Super-classes obo:IAO_0000033c

act of storing a specimenc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000060
Super-classes obo:ICO_0000227c
Restrictions obo:RO_0000057op some obo:OBI_0100051c

informed consent form for genetic studyc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000061
Super-classes obo:ICO_0000001c

human subject unable to give informed consentc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000062
Super-classes obo:NCBITaxon_9606c

obsolete informed consent form for quantitative studyc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000063
Super-classes oboInOwl:ObsoleteClassc

study requiring informed consentc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000064
Super-classes obo:OBI_0000066c

clinical trialc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000065
Super-classes obo:OBI_0000066c

clinical trial titlec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000066
Super-classes obo:OBI_0001622c
Restrictions obo:IAO_0020012op some obo:ICO_0000065c

obsolete general requirement for informed consentc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000068
Super-classes oboInOwl:ObsoleteClassc

contact person for questions about researchc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000069
Super-classes obo:NCBITaxon_9606c

contact person for questions about research subject rightsc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000070
Super-classes obo:NCBITaxon_9606c

obsolete contact person in the event of a research-related injury to the subjectc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000071
Super-classes oboInOwl:ObsoleteClassc

contact person in informed consent processc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000072
Super-classes obo:NCBITaxon_9606c

research subject rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000073
Super-classes obo:BFO_0000023c

authorization for release of confidential health informationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000074
Super-classes obo:ICO_0000046c

obsolete authorization documentc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000075
Super-classes oboInOwl:ObsoleteClassc

obsolete authorization for medical records releasec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000076
Super-classes oboInOwl:ObsoleteClassc

obsolete benefitc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000077
Description

Note that a payment is not a benefit of a study.
Super-classes oboInOwl:ObsoleteClassc

riskc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000078
Super-classes obo:BFO_0000016c
Sub-classes obo:ICO_0000095c

institutional review boardc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000079
Super-classes obo:OBI_0000245c

research assistant rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000080
Super-classes obo:BFO_0000023c

legal guardian rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000081
Super-classes obo:BFO_0000023c

obsolete legal guardianc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000082
Super-classes oboInOwl:ObsoleteClassc

individually identifiable health information entityc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000083
Super-classes obo:ICO_0000103c

informed consent process with assentc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000084
Super-classes obo:OBI_0000810c

informed assent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000085
Super-classes obo:IAO_0000310c
Sub-classes obo:ICO_0000032c
obo:ICO_0000185c

consenter rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000086
Super-classes obo:BFO_0000023c

study duration measurementc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000087
Super-classes obo:IAO_0000109c

participation durationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000088
Super-classes obo:BFO_0000038c

actual duration of study subject participationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000089
Super-classes obo:BFO_0000008c

obsolete credential letterc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000090
Super-classes oboInOwl:ObsoleteClassc

obsolete follow-up visitc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000094
Super-classes oboInOwl:ObsoleteClassc

minimal riskc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000095
Super-classes obo:ICO_0000078c

obsolete alcohol abuse treatment recordc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000096
Super-classes oboInOwl:ObsoleteClassc

obsolete mental health care recordc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000097
Super-classes oboInOwl:ObsoleteClassc

explaining to participant candidate about the study participating informationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000098
Super-classes obo:OBI_0000011c

informed consent form for human urine biospecimen collectionc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000099
Super-classes obo:ICO_0000001c

research-related injuryc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000100
Super-classes obo:OGMS_0000102c

health information entityc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000101
Super-classes obo:IAO_0000030c
Sub-classes obo:ICO_0000103c

obsolete information sharing processc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000102
Super-classes oboInOwl:ObsoleteClassc

protected health information entityc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000103
Super-classes obo:ICO_0000101c
Sub-classes obo:ICO_0000426c
obo:ICO_0000083c

informed consent form containing questionnairec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000104
Super-classes obo:ICO_0000001c

explaining study purpose to participant candidatec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000105
Super-classes obo:ICO_0000154c

obsolete legal namec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000106
Super-classes oboInOwl:ObsoleteClassc

study terminationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000107
Super-classes obo:BFO_0000015c

withdrawing participation in studyc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000108
Super-classes obo:OBI_0000011c

act of canceling a permissionc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000109
Super-classes obo:OBI_0000011c

standard medical treatmentc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000110
Super-classes obo:OGMS_0000090c

review board approval numberc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000111
Super-classes obo:IAO_0000028c
Sub-classes obo:ICO_0000131c
In range of obo:ICO_0000130op

data administration functionc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000112
Super-classes obo:BFO_0000034c

anonymized information content entityc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000113
Description

Anonymized data is applicable particularly for secondary use of health data.
Super-classes obo:IAO_0000030c

obsolete anonymized genomic datac # Classes

URI http://purl.obolibrary.org/obo/ICO_0000114
Super-classes oboInOwl:ObsoleteClassc

obsolete anonymized genomic samplec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000115
Super-classes oboInOwl:ObsoleteClassc

act of using study participant datac # Classes

URI http://purl.obolibrary.org/obo/ICO_0000116
Super-classes obo:ICO_0000421c

explaining study protocol to participant candidatec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000117
Super-classes obo:ICO_0000154c

repository of documentsc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000118
Super-classes obo:BFO_0000029c

obsolete storage duration of signed informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000119
Super-classes oboInOwl:ObsoleteClassc

archiving signed informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000120
Super-classes obo:OBI_0000011c
Sub-classes obo:ICO_0000125c

explaining benefits of participation to participant candidatec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000121
Super-classes obo:ICO_0000154c

obsolete US federal policy for the protection of human subjectsc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000122
Super-classes oboInOwl:ObsoleteClassc

act of storing signed informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000123
Description

Note: there were previously some related classes that distinguished the format of the informed consent form (e.g. electronic vs. paper). These distinctions are collapsed here. If making this distinction is necessary, the outputs of an instance of this class may be distinguished in their formatting. For instance, storing in an electronic format would entail an instance of an act of storing signed informed consent form bearing an 'has output' relation to an instance of an informed consent form that is in an electronic format.
Super-classes obo:ICO_0000227c

archiving signed electronic informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000124
Super-classes obo:OBI_0000011c

archiving signed scanned paper informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000125
Super-classes obo:ICO_0000120c

storage duration of signed informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000126
Super-classes obo:BFO_0000008c

planned duration of study subject participationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000127
Super-classes obo:BFO_0000003c

explaining risks of participation to participant candidatec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000128
Super-classes obo:ICO_0000154c

informed consent form for human saliva sample collectionc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000129
Super-classes obo:ICO_0000001c

institutional review board approval numberc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000131
Super-classes obo:ICO_0000111c

explaining sample process and usage to participant candidatec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000133
Super-classes obo:ICO_0000154c

explaining study derived data usage to participant candidatec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000134
Super-classes obo:ICO_0000154c

explaining record confidentiality to participant candidatec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000135
Super-classes obo:ICO_0000154c

participant candidate making voluntary decision of acceptancec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000136
Super-classes obo:BFO_0000015c

obsolete assessment of participant candidate understandingc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000137
Super-classes oboInOwl:ObsoleteClassc

informed consent form for vaccinationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000138
Super-classes obo:ICO_0000001c

obsolete Walgreens vaccine informed consent form'c # Classes

URI http://purl.obolibrary.org/obo/ICO_0000139
Super-classes oboInOwl:ObsoleteClassc

eligibility questionnairec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000140
Super-classes obo:OBI_0001000c

question textual entityc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000141
Super-classes obo:IAO_0000300c

legally effective consentingc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000142
Super-classes obo:OBI_0000011c

obsolete assent processc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000143
Description

Specifically, "assent" is a term used to express willingness to participate in research by persons who are by definition too young to give informed consent but who are old enough to understand the proposed research in general, its expected risks and possible benefits, and the activities expected of them as subjects.
Super-classes oboInOwl:ObsoleteClassc

legally effective consented participant rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000144
Super-classes obo:BFO_0000023c

postmortem donation of biological specimenc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000145
Super-classes obo:OBI_0000011c

eligibility of candidate participationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000146
Super-classes obo:BFO_0000023c

candidate eligible for study rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000147
Super-classes obo:BFO_0000023c

candidate ineligible for study rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000148
Super-classes obo:BFO_0000023c

act of contact for future researchc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000149
Super-classes obo:OBI_0000011c

eligibility screening processc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000150
Super-classes obo:OBI_0000011c

eligibility screening rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000151
Super-classes obo:BFO_0000023c

obsolete eligibility screening personc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000152
Super-classes oboInOwl:ObsoleteClassc

obsolete consenting to be contacted for tissue researchc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000153
Super-classes oboInOwl:ObsoleteClassc

explaining to participant candidate in informed consent processc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000154
Super-classes obo:OBI_0000011c
Sub-classes obo:ICO_0000134c
obo:ICO_0000121c
obo:ICO_0000133c
obo:ICO_0000128c
obo:ICO_0000135c
obo:ICO_0000105c
obo:ICO_0000117c

obsolete informed consentc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000155
Super-classes oboInOwl:ObsoleteClassc

adult consent processc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000156
Super-classes obo:OBI_0000810c

parental informed consent processc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000157
Super-classes obo:OBI_0000810c

act of declining to provide consentc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000158
Super-classes obo:OBI_0000011c

informed verbal consentc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000159
Super-classes obo:ICO_0000196c

consenting in short formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000160
Super-classes obo:OBI_0000810c

biological sample collectingc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000161
Super-classes obo:OBI_0000011c
Sub-classes obo:ICO_0000163c
obo:ICO_0000162c

tissue sample collectingc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000162
Super-classes obo:ICO_0000161c

blood sample collectingc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000163
Super-classes obo:ICO_0000161c

subject withdrawal with sample stored for unlimited timec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000164
Super-classes obo:OBI_0000011c

subject withdrawal with sample stored for limited timec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000165
Super-classes obo:OBI_0000011c

obsolete deontic rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000166
Super-classes oboInOwl:ObsoleteClassc

obsolete permittee deontic role in genetic researchc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000167
Description

Note: this term wll be transferred to d-acts. - CTSOG ontology workshop 2018 Little Rock
Super-classes oboInOwl:ObsoleteClassc

obsolete genetic research permission deontic declarationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000168
Description

will add an equivalent class axiom 'has specified output' some 'permittee deontic role in genetic research'
Super-classes oboInOwl:ObsoleteClassc

assenter rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000169
Super-classes obo:BFO_0000023c

filled questionnairec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000170
Super-classes obo:OBI_0001000c

filled multiple choice text entityc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000171
Super-classes obo:IAO_0000300c
Sub-classes obo:ICO_0000172c
obo:ICO_0000173c

yes answer text entityc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000172
Super-classes obo:ICO_0000171c

no answer text entityc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000173
Super-classes obo:ICO_0000171c

filling informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000174
Super-classes obo:OBI_0000011c

filling questionnairec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000175
Super-classes obo:OBI_0000011c

obsolete permittee deontic rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000176
Description

Note: this term wll be transferred to d-acts. - CTSOG ontology workshop 2018 Little Rock
Super-classes oboInOwl:ObsoleteClassc

consenting not to have financial benefitc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000177
Super-classes obo:ICO_0000196c

consenting to not to be informed about incidental findingc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000178
Super-classes obo:OBI_0000011c

broad consent processc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000179
Super-classes obo:OBI_0000011c

obsolete process of providing broad consent for research with biological samplec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000180
Super-classes oboInOwl:ObsoleteClassc

secondary usec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000181
Super-classes obo:OBI_0000011c

obsolete consenting to the secondary use of EHRc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000182
Super-classes oboInOwl:ObsoleteClassc

obsolete NEW_CLASSESc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000184
Super-classes oboInOwl:ObsoleteClassc

informed assent form for cognitively impairedc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000185
Super-classes obo:ICO_0000085c

permission temporal regionc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000186
Super-classes obo:BFO_0000008c

legal representative rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000187
Super-classes obo:BFO_0000023c

organization-specified contact rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000188
Super-classes obo:ICO_0000230c

contact directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000189
Super-classes obo:IAO_0000033c

description of participation benefitc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000190
Super-classes cco:DescriptiveInformationContentEntityc

obsolete description of allowed action typesc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000191
Super-classes oboInOwl:ObsoleteClassc

description of broad consentc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000192
Super-classes cco:DescriptiveInformationContentEntityc

act of filling out formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000193
Super-classes obo:OBI_0000011c

obsolete social act (placeholder)c # Classes

URI http://purl.obolibrary.org/obo/ICO_0000194
Super-classes oboInOwl:ObsoleteClassc

act of permittingc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000195
Super-classes obo:IAO_0021003c
Restrictions obo:OBI_0000299op some obo:ICO_0000199c
Sub-classes obo:ICO_0000196c

act of informed consentingc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000196
Super-classes obo:ICO_0000195c
Sub-classes obo:ICO_0000159c
obo:ICO_0000177c

act of communicating assentc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000197
Super-classes obo:IAO_0021003c

permission rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000199
Super-classes obo:IAO_0021008c

obsolete consent power rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000200
Super-classes oboInOwl:ObsoleteClassc

capability to consentc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000201
Super-classes obo:BFO_0000016c
Restrictions obo:RO_0000052op some obo:ICO_0000220c
Sub-classes obo:ICO_0000202c

competency to consentc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000202
Super-classes obo:ICO_0000201c

obsolete assenter rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000203
Super-classes oboInOwl:ObsoleteClassc

assenterc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000204

consenterc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000205

obsolete consenter rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000206
Super-classes oboInOwl:ObsoleteClassc

incomplete informed consent formc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000213
Description

Note: instances of 'incomplete informed consent form' include both blank informed consent forms that are waiting to be used in a process of informed consent, as well as those that have been left blank by a patient, whether on purpose or in error. Those that have been left blank on purpose have been used in a process of informed consent, where the patient must have reached a decision.
Super-classes obo:ICO_0000001c

complete informed consent form indicating consentc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000214
Super-classes obo:ICO_0000001c

deontic power rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000215
Super-classes obo:IAO_0021008c
Sub-classes obo:ICO_0000223c

act of anonymizingc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000217
Super-classes obo:OBI_0000011c
Sub-classes obo:ICO_0000218c

act of removing identifiable informationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000218
Super-classes obo:ICO_0000217c

agentc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000220
Super-classes obo:BFO_0000040c

act of informingc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000221
Super-classes obo:IAO_0021003c

signaturec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000222
Super-classes obo:IAO_0000030c

consent power rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000223
Super-classes obo:ICO_0000215c

stasis of anonymizationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000226
Super-classes cco:StasisOfGenericallyDependentContinuantc

act of storingc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000227
Super-classes obo:OBI_0000011c
Sub-classes obo:ICO_0000123c
obo:ICO_0000060c

act of data sharingc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000228
Super-classes obo:OBI_0000011c

human subject-specified contact person rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000229
Super-classes obo:ICO_0000230c

contact person rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000230
Description

The subclasses of 'contact person role' distinguish two types: a contact person who has been designated by an organization for others (primarily patients and human research subjects in clinical settings) to contact, and a contact person whom an agent has specified for an organization to contact in the event that the organization needs to contact the patient. Examples of the latter include 'emergency contact' persons, who are frequently specified in a form.
Super-classes obo:BFO_0000023c
Sub-classes obo:ICO_0000229c
obo:ICO_0000188c

jurisdictionc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000231
Super-classes obo:BFO_0000029c

obsolete regulatory bodyc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000232
Super-classes oboInOwl:ObsoleteClassc

regulatory documentc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000233
Super-classes obo:IAO_0000310c
Sub-classes obo:ICO_0000234c
obo:ICO_0000235c

human subject research regulatory documentc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000234
Super-classes obo:ICO_0000233c

informed consent regulatory documentc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000235
Super-classes obo:ICO_0000233c

informed consent rulec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000236
Super-classes obo:IAO_0000055c

conditional informed consent rulec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000237
Super-classes obo:IAO_0000055c

broad consent rulec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000238
Super-classes obo:IAO_0000055c

disclosure directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000239
Super-classes obo:IAO_0000033c

deontic power role directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000240
Super-classes obo:IAO_0000033c

obsolete confidentiality directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000241
Super-classes oboInOwl:ObsoleteClassc

user input directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000242
Super-classes obo:IAO_0000033c
Sub-classes obo:ICO_0000010c

consequent directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000243
Super-classes obo:IAO_0000033c

obsolete conditional permission directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000245
Super-classes oboInOwl:ObsoleteClassc

restriction directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000246
Super-classes obo:IAO_0000033c

conditional restriction directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000247
Super-classes obo:IAO_0000001c

obligation directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000248
Super-classes obo:IAO_0000033c

conditional obligation directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000249
Super-classes obo:IAO_0000001c

liability directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000250
Super-classes obo:IAO_0000033c

description of medical procedurec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000251
Super-classes cco:DescriptiveInformationContentEntityc

trigger condition directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000252
Super-classes obo:IAO_0000033c
Sub-classes obo:ICO_0000299c

description of voluntary participationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000253
Super-classes cco:DescriptiveInformationContentEntityc

witness rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000254
Super-classes obo:BFO_0000023c

withdrawal from participation directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000255
Super-classes obo:IAO_0000033c

legal agec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000256
Super-classes obo:IAO_0000030c

act of approvingc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000257
Description

This 'act of approving' is distinct from the mental act of approving.
Super-classes obo:IAO_0021003c

consent language directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000258
Super-classes obo:IAO_0000033c

description of alternativec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000259
Super-classes cco:DescriptiveInformationContentEntityc

description of coercionc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000260
Super-classes cco:DescriptiveInformationContentEntityc

obsolete information about participantc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000261
Super-classes oboInOwl:ObsoleteClassc

cognitive impairmentc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000262
Super-classes obo:BFO_0000016c

economic vulnerabilityc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000263
Super-classes http://purl.unep.org/sdg/SDGIO_00000024c

educational vulnerabilityc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000264
Super-classes http://purl.unep.org/sdg/SDGIO_00000024c

act of archiving informed consentc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000265
Super-classes obo:OBI_0000011c

contact method descriptionc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000266
Super-classes cco:DescriptiveInformationContentEntityc

vulnerable population directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000267
Super-classes obo:IAO_0000033c

confidentiality directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000268
Super-classes obo:IAO_0000033c

act of communicatingc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000269
Description

A note: 'entity' rather than 'agent' is used in this definition in order to allow that software can communicate with other software. However, it should be noted that this definition of communication excludes broader meanings, such as unintentional sharing of information.
Super-classes obo:IAO_0021003c
Sub-classes obo:ICO_0000302c

obsolete benefitc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000270
Super-classes oboInOwl:ObsoleteClassc

obsolete riskc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000271
Super-classes oboInOwl:ObsoleteClassc

description of expected study participation durationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000272
Super-classes cco:DescriptiveInformationContentEntityc

research method directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000273
Super-classes obo:IAO_0000033c

description of conditional compensationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000274
Super-classes cco:DescriptiveInformationContentEntityc

description of discomfortc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000275
Super-classes cco:DescriptiveInformationContentEntityc

description of collected biospecimensc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000276
Super-classes cco:DescriptiveInformationContentEntityc

description of collected informationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000277
Super-classes cco:DescriptiveInformationContentEntityc

description of future biospecimen usec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000278
Super-classes obo:ICO_0000305c

description of procedure for obtaining further informationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000279
Super-classes cco:DescriptiveInformationContentEntityc

contact method directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000280
Super-classes obo:IAO_0000033c

description of breach of confidentialityc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000281
Super-classes cco:DescriptiveInformationContentEntityc

description of legal responsibilityc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000282
Super-classes cco:DescriptiveInformationContentEntityc

description of financial riskc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000283
Super-classes cco:DescriptiveInformationContentEntityc

description of reputational riskc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000284
Super-classes cco:DescriptiveInformationContentEntityc

vulnerable individual rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000285
Super-classes obo:BFO_0000023c

regulatory oversight rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000286
Super-classes obo:BFO_0000023c

minor rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000287
Super-classes obo:BFO_0000023c

pregnant womanc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000288
Super-classes obo:BFO_0000030c

prisoner rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000289
Super-classes obo:BFO_0000023c

waiver documentc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000290
Super-classes obo:IAO_0000310c

description of incentivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000291
Super-classes cco:DescriptiveInformationContentEntityc

study protocolc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000292
Super-classes obo:OBI_0000272c

data sharing directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000293
Super-classes obo:IAO_0000033c

permission transfer directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000294
Super-classes obo:IAO_0000033c

future use directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000295
Super-classes obo:IAO_0000033c

description of consequences of voluntarily withdrawalc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000296
Super-classes cco:DescriptiveInformationContentEntityc

stasis of regulationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000297
Super-classes cco:StasisOfGenericallyDependentContinuantc
Sub-classes obo:ICO_0000298c

stasis of lawc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000298
Super-classes obo:ICO_0000297c

protection directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000299
Super-classes obo:ICO_0000252c

act of regulatory supervisionc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000300
Super-classes obo:OBI_0000011c

act of abusec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000301
Super-classes obo:BFO_0000015c

act of disclosurec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000302
Super-classes obo:ICO_0000269c

description of research procedurec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000303
Super-classes cco:DescriptiveInformationContentEntityc

description of future data usec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000304
Super-classes obo:ICO_0000305c

description of future usec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000305
Super-classes cco:DescriptiveInformationContentEntityc
Sub-classes obo:ICO_0000278c
obo:ICO_0000304c

act of waivingc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000306
Super-classes obo:IAO_0021003c

waiver directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000307
Super-classes obo:IAO_0000033c

description of waiverc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000308
Super-classes cco:DescriptiveInformationContentEntityc

abused person rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000309
Super-classes obo:BFO_0000023c

directive about research of biospecimensc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000310
Super-classes obo:IAO_0000033c

act of genetic testingc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000311
Super-classes obo:OBI_0000011c

genetic testing directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000312
Super-classes obo:IAO_0000033c
Restrictions cco:prescribesop some obo:ICO_0000311c

excess material rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000313
Super-classes obo:BFO_0000023c

investigation objective specificationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000314
Super-classes obo:IAO_0000005c

secondary use objective specificationc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000315
Super-classes obo:IAO_0000005c

role directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000316
Super-classes obo:IAO_0000033c
Sub-classes obo:ICO_0000319c
obo:ICO_0000317c
obo:ICO_0000320c
obo:ICO_0000318c

patient role directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000317
Super-classes obo:ICO_0000316c

regulatory oversight role directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000318
Super-classes obo:ICO_0000316c

investigator role directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000319
Super-classes obo:ICO_0000316c

legally authorized representative role directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000320
Super-classes obo:ICO_0000316c

act of data usec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000421
Super-classes obo:OBI_0000011c
Sub-classes obo:ICO_0000116c

patientc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000422
Super-classes obo:NCBITaxon_9606c

act of sellingc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000423
Super-classes obo:OBI_0000011c

covered entity rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000424
Super-classes obo:BFO_0000023c

data recipient rolec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000425
Super-classes obo:BFO_0000023c

limited data setc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000426
Super-classes obo:ICO_0000103c

owner role directivec # Classes

URI http://purl.obolibrary.org/obo/ICO_0000427
Super-classes obo:IAO_0000033c

ownership statisc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000428
Super-classes cco:Stasisc

residual clinical biospecimenc # Classes

URI http://purl.obolibrary.org/obo/ICO_0000429
Super-classes obo:BFO_0000040c

disease or disorderc # Classes

URI http://purl.obolibrary.org/obo/MONDO_0000001
Super-classes obo:BFO_0000016c

Virusesc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_10239
Super-classes obo:OBI_0100026c

Euteleostomic # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_117571
Super-classes obo:NCBITaxon_7742c
Sub-classes obo:NCBITaxon_32523c

Bacteriac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_2
Super-classes obo:OBI_0100026c

Archaeac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_2157
Super-classes obo:OBI_0100026c

Eukaryotac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_2759
Super-classes obo:OBI_0100026c
Sub-classes obo:NCBITaxon_33154c

Euarchontogliresc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_314146
Super-classes obo:NCBITaxon_40674c
Sub-classes obo:NCBITaxon_9606c

Tetrapodac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_32523
Super-classes obo:NCBITaxon_117571c
Sub-classes obo:NCBITaxon_32524c

Amniotac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_32524
Super-classes obo:NCBITaxon_32523c
Sub-classes obo:NCBITaxon_40674c

Opisthokontac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_33154
Super-classes obo:NCBITaxon_2759c
Sub-classes obo:NCBITaxon_33213c

Bilateriac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_33213
Super-classes obo:NCBITaxon_33154c
Sub-classes obo:NCBITaxon_7742c

Mammaliac # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_40674
Super-classes obo:NCBITaxon_32524c
Sub-classes obo:NCBITaxon_314146c

Vertebrata c # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_7742
Super-classes obo:NCBITaxon_33213c
Sub-classes obo:NCBITaxon_117571c

Homo sapiensc # Classes

URI http://purl.obolibrary.org/obo/NCBITaxon_9606
Super-classes obo:NCBITaxon_314146c
obo:OBI_0100026c
Sub-classes obo:ICO_0000069c
obo:ICO_0000072c
obo:ICO_0000040c
obo:ICO_0000070c
obo:ICO_0000422c
obo:ICO_0000062c

institutional review board approvalc # Classes

URI http://purl.obolibrary.org/obo/NCIT_C70800
Super-classes obo:IAO_0000310c

incarcerationc # Classes

URI http://purl.obolibrary.org/obo/NCIT_C85521
Description

Note from J. Neil Otte: Incarceration can include facilities other than prison or jail. Also, there's a meaningful distinction between states and processes getting lost here. Review.

Note from Jonathan Vajda: A better definition might be, 'A stasis of confinement issued by a legal authority on the basis of a criminal act'
Super-classes obo:BFO_0000015c

adverse eventc # Classes

URI http://purl.obolibrary.org/obo/OAE_0000001
Description

The OAE official website is: http://www.oae-ontology.org/.
Super-classes obo:OGMS_0000060c

blood specimen on blood spot cardc # Classes

URI http://purl.obolibrary.org/obo/OBIB_0000039
Super-classes obo:OBI_0000655c

planned processc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000011
Super-classes obo:BFO_0000015c
Sub-classes obo:ICO_0000108c
obo:ICO_0000124c
obo:IAO_0020011c
obo:ICO_0000178c
obo:ICO_0000098c
obo:IAO_0020010c
obo:OBI_0000659c
obo:APOLLO_SV_00000033c
obo:ICO_0000193c
obo:OGMS_0000090c
obo:ICO_0000109c
obo:ICO_0000150c
obo:OBI_0200000c
obo:IAO_0000580c
obo:OBI_0000338c
obo:OBI_0000471c
obo:ICO_0000004c
obo:ICO_0000423c
obo:ICO_0000311c
obo:ICO_0000300c
obo:IAO_0000650c
obo:OGMS_0000096c
obo:IAO_0000444c
obo:ICO_0000217c
obo:ICO_0000158c
obo:OBI_0000810c
obo:OBI_0000094c
obo:ICO_0000179c
obo:ICO_0000228c
obo:ICO_0000161c
obo:ICO_0000165c
obo:OBI_0000066c
obo:ICO_0000265c
obo:ICO_0000174c
obo:ICO_0000181c
obo:ICO_0000421c
obo:OMRSE_00002029c
obo:ICO_0000003c
obo:APOLLO_SV_00000008c
obo:ICO_0000002c
obo:IAO_0000443c
obo:IAO_0000574c
obo:IAO_0021003c
obo:ICO_0000120c
obo:CHMO_0002845c
obo:ICO_0000149c
obo:ICO_0000142c
obo:APOLLO_SV_00000796c
obo:IAO_0000575c
obo:ICO_0000164c
obo:IAO_0000572c
obo:ICO_0000175c
obo:ICO_0000227c
obo:OGMS_0000056c
obo:ICO_0000145c
obo:OBI_0000838c
obo:ICO_0000154c
In domain of obo:OBI_0000417op
obo:OBI_0000299op
obo:OBI_0000293op
In range of obo:OBI_0000833op
obo:OBI_0000312op
obo:OBI_0000295op

processed materialc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000047
Super-classes obo:BFO_0000040c
Sub-classes obo:CL_0000578c
obo:OBI_0000968c
obo:OBI_0100060c
obo:OBI_0000079c
obo:OBI_0000423c
obo:OBI_0001936c
obo:OBI_0100066c
obo:OBI_0001912c
obo:OBI_0000953c

investigationc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000066
Super-classes obo:OBI_0000011c
Restrictions obo:BFO_0000051op some obo:IAO_0000572c
obo:BFO_0000051op some obo:OBI_0000338c
obo:BFO_0000051op some (obo:OBI_0000339c and ub50bL8616C17c)
obo:BFO_0000051op some obo:OBI_0000471c
Sub-classes obo:ICO_0000053c
obo:DUO_0000034c
obo:DUO_0000033c
obo:DUO_0000037c
obo:DUO_0000031c
obo:ICO_0000064c
obo:ICO_0000065c
obo:DUO_0000035c
obo:DUO_0000032c
obo:DUO_0000036c
obo:ICO_0000057c
obo:ICO_0000056c
obo:ICO_0000051c
obo:ICO_0000054c

culture mediumc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000079
Super-classes obo:OBI_0000047c

reagent rolec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000086
Description

(copied from ReO) Reagents are distinguished from instruments or devices that also participate in scientific techniques by the fact that reagents are chemical or biological in nature and necessarily participate in or have parts that participate in some chemical interaction or reaction during their intended participation in some technique. By contrast, instruments do not participate in a chemical reaction/interaction during the technique.

Reagents are distinguished from study subjects/evaluants in that study subjects and evaluants are that about which conclusions are drawn and knowledge is sought in an investigation - while reagents, by definition, are not. It should be noted, however, that reagent and study subject/evaluant roles can be borne by instances of the same type of material entity - but a given instance will realize only one of these roles in the execution of a given assay or technique. For example, taq polymerase can bear a reagent role or an evaluant role. In a DNA sequencing assay aimed at generating sequence data about some plasmid, the reagent role of the taq polymerase is realized. In an assay to evaluate the quality of the taq polymerase itself, the evaluant/study subject role of the taq is realized, but not the reagent role since the taq is the subject about which data is generated.

In regard to the statement that reagents are 'distinct' from the specified outputs of a technique, note that a reagent may be incorporated into a material output of a technique, as long as the IDENTITY of this output is distinct from that of the bearer of the reagent role. For example, dNTPs input into a PCR are reagents that become part of the material output of this technique, but this output has a new identity (ie that of a 'nucleic acid molecule') that is distinct from the identity of the dNTPs that comprise it. Similarly, a biotin molecule input into a cell labeling technique are reagents that become part of the specified output, but the identity of the output is that of some modified cell specimen which shares identity with the input unmodified cell specimen, and not with the biotin label. Thus, we see that an important criteria of 'reagent-ness' is that it is a facilitator, and not the primary focus of an investigation or material processing technique (ie not the specified subject/evaluant about which knowledge is sought, or the specified output material of the technique).
Super-classes obo:BFO_0000023c

patient rolec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000093
Super-classes obo:BFO_0000023c

material processingc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000094
Super-classes obo:OBI_0000011c
Restrictions obo:OBI_0000299op some obo:OBI_0000047c
obo:OBI_0000299op only obo:BFO_0000040c
obo:OBI_0000293op only obo:BFO_0000040c
obo:OBI_0000293op some obo:BFO_0000040c
Sub-classes obo:OBI_0600014c
obo:OBI_0302887c
obo:OBI_0000341c
obo:OBI_0600036c
obo:OBI_0600038c
obo:OBI_0000652c

participant under investigation rolec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000097
Super-classes obo:BFO_0000023c
Restrictions obo:BFO_0000054op only obo:OBI_0000471c

principal investigator rolec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000103
Super-classes obo:OBI_0000202c

specimen rolec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000112
Super-classes obo:BFO_0000023c
Restrictions obo:RO_0000052op some (obo:BFO_0000040c and ub50bL8774C17c)
Sub-classes obo:OBI_0000740c

filter paperc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000151
Super-classes obo:OBI_0000932c
Restrictions obo:RO_0000085op some obo:OBI_0000378c

populationc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000181
Super-classes obo:BFO_0000040c
Sub-classes obo:ICO_0000047c

investigation agent rolec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000202
Description

Philly2013: Historically, this role would have been borne only by humans or organizations. However, we now also want to enable investigations run by robot scientists such as ADAM (King et al, Science, 2009)
Super-classes obo:BFO_0000023c
Restrictions obo:BFO_0000054op only obo:OBI_0000066c
Sub-classes obo:OBI_0000103c

organizationc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000245
Super-classes obo:BFO_0000040c
Sub-classes obo:ICO_0000079c
cco:Governmentc
obo:OBI_0000450c
obo:GEO_000000400c
obo:ICO_0000006c
obo:OBI_0001942c
obo:ICO_0000048c
obo:OMIABIS_0000017c
obo:OMRSE_00000056c
obo:ICO_0000049c
obo:OMIABIS_0000010c

DNA extractionc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000257
Super-classes obo:OBI_0666667c
Restrictions obo:OBI_0000299op some obo:CHEBI_16991c

protocolc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000272
Super-classes obo:IAO_0000310c
obo:IAO_0000104c
Sub-classes obo:ICO_0000292c

adding a material entity into a targetc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000274
Super-classes obo:OBI_0000652c
Restrictions obo:BFO_0000055op some obo:OBI_0000444c
obo:BFO_0000055op some obo:OBI_0000319c
obo:OBI_0000299op some (obo:BFO_0000040c and ub50bL8978C17c and ub50bL8983C17c)

material to be added rolec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000319
Super-classes obo:BFO_0000023c

drawing a conclusion based on datac # Classes

URI http://purl.obolibrary.org/obo/OBI_0000338
Super-classes obo:OBI_0000011c
Restrictions obo:OBI_0000299op some obo:OBI_0001909c
obo:OBI_0000293op some obo:IAO_0000027c

planningc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000339
Super-classes obo:BFO_0000015c

histological sample preparationc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000341
Super-classes obo:OBI_0000659c
obo:OBI_0000094c
Restrictions obo:OBI_0000417op some obo:OBI_0000456c
obo:RO_0000057op some obo:OBI_0400168c
obo:OBI_0000293op some obo:OBI_0100066c
obo:OBI_0000417op some obo:OBI_0000684c

contain functionc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000370
Super-classes obo:BFO_0000034c

material separation functionc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000372
Super-classes obo:BFO_0000034c
Sub-classes obo:OBI_0000378c

filter functionc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000378
Super-classes obo:OBI_0000372c

mechanical functionc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000379
Super-classes obo:BFO_0000034c

extractc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000423
Super-classes obo:OBI_0000047c
Restrictions obo:OBI_0000312op some obo:OBI_0302884c
Sub-classes obo:OBI_0001010c

adding material objectivec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000434
Super-classes obo:OBI_0000686c

target of material addition rolec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000444
Super-classes obo:BFO_0000023c
Restrictions obo:BFO_0000054op only obo:OBI_0000274c
obo:RO_0000052op some obo:BFO_0000040c

regulatory agencyc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000450
Super-classes obo:OBI_0000245c

measure functionc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000453
Super-classes obo:BFO_0000034c
Restrictions obo:RO_0000079op some obo:OBI_0000047c
obo:BFO_0000054op only ()

material transformation objectivec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000456
Super-classes obo:IAO_0000005c
Sub-classes obo:OBI_0000639c
obo:OBI_0000686c

study design executionc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000471
Super-classes obo:OBI_0000011c

material separation objectivec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000639
Super-classes obo:OBI_0000456c
Sub-classes obo:OBI_0000678c
obo:OBI_0000681c

urine specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000651
Super-classes obo:OBI_0001479c
Restrictions obo:RO_0001000op some obo:UBERON_0001088c
obo:OBI_0000312op some obo:OBI_0600005c
obo:RO_0000087op some obo:OBI_0000112c

material combinationc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000652
Super-classes obo:OBI_0000094c
Restrictions obo:OBI_0000299op some obo:BFO_0000040c
obo:OBI_0000293op some obo:BFO_0000040c
Sub-classes obo:OBI_0000274c

blood specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000655
Super-classes obo:OBI_0001479c
Restrictions obo:OBI_0000312op some obo:OBI_0600005c
obo:RO_0001000op some obo:UBERON_0000178c
obo:RO_0000087op some obo:OBI_0000112c
Sub-classes obo:OBIB_0000039c

specimen collection processc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000659
Super-classes obo:OBI_0000011c
Restrictions obo:OBI_0000299op some obo:OBI_0100051c
obo:OBI_0000293op some obo:BFO_0000040c
Sub-classes obo:OBI_0000341c
obo:OBI_0600005c

sample from organismc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000671
Super-classes obo:OBI_0000747c
obo:OBI_0001479c
Restrictions obo:RO_0001000op some obo:UBERON_0000465c

portioning objectivec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000678
Super-classes obo:OBI_0000639c

whole organism preparationc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000680
Super-classes obo:OBI_0100051c
(obo:BFO_0000040c and ub50bL9506C13c)
Restrictions obo:RO_0001000op some obo:OBI_0100026c
obo:OBI_0000312op some obo:OBI_0000659c
Sub-classes obo:OBI_1000049c

separation into different composition objectivec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000681
Super-classes obo:OBI_0000639c

specimen collection objectivec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000684
Super-classes obo:IAO_0000005c

material combination objectivec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000686
Super-classes obo:OBI_0000456c
Sub-classes obo:OBI_0000434c

material sample rolec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000740
Super-classes obo:OBI_0000112c

material samplec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000747
Super-classes obo:OBI_0100051c
Sub-classes obo:OBI_0000671c

material maintenance objectivec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000806
Super-classes obo:IAO_0000005c

informed consent processc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000810
Super-classes obo:OBI_0000011c
Restrictions obo:RO_0000057op some ()
obo:OBI_0000293op some obo:NCBITaxon_9606c
Sub-classes obo:ICO_0000084c
obo:ICO_0000160c
obo:ICO_0000157c
obo:ICO_0000156c

measurement devicec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000832
Super-classes obo:OBI_0000968c
Sub-classes obo:OBI_0400106c

high molecular weight DNA extractc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000834
Super-classes obo:OBI_0001051c

material maintenancec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000838
Super-classes obo:OBI_0000011c
Sub-classes obo:OBI_0600024c
obo:OBI_0302893c

hospitalc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000844
Super-classes obo:OBI_0001942c

polyA RNA extractionc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000848
Super-classes obo:OBI_0666666c

organellar RNA extractionc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000849
Super-classes obo:OBI_0666666c

total RNA extractionc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000855
Description
Super-classes obo:OBI_0666666c

cytoplasmic RNA extractionc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000859
Super-classes obo:OBI_0666666c

nuclear RNA extractc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000862
Super-classes obo:OBI_0000880c
Restrictions obo:OBI_0000312op some obo:OBI_0000888c

polyA RNA extractc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000869
Super-classes obo:OBI_0000880c
Restrictions obo:OBI_0000312op some obo:OBI_0000848c

pre-mortem specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000873
Super-classes obo:OBI_0001506c

cytoplasmic RNA extractc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000876
Super-classes obo:OBI_0000880c
Restrictions obo:OBI_0000312op some obo:OBI_0000859c

RNA extractc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000880
Super-classes obo:OBI_0001010c
Restrictions obo:OBI_0000312op some obo:OBI_0666666c
obo:OBI_0000643op some obo:CHEBI_33697c
Sub-classes obo:OBI_0000895c
obo:OBI_0000862c
obo:OBI_0000876c
obo:OBI_0000899c
obo:OBI_0000869c

nuclear RNA extractionc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000888
Super-classes obo:OBI_0666666c

total RNA extractc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000895
Super-classes obo:OBI_0000880c
Restrictions obo:OBI_0000312op some obo:OBI_0000855c

organellar RNA extractc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000899
Super-classes obo:OBI_0000880c
Restrictions obo:OBI_0000312op some obo:OBI_0000849c

post mortem specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000902
Super-classes obo:OBI_0001506c

labeled DNA extractc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000908
Super-classes (ub50bL9941C29c and ub50bL9955C13c)
obo:OBI_0001143c
Restrictions obo:OBI_0000643op some obo:CHEBI_16991c

cloacal specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000909
Super-classes obo:OBI_0100051c
Restrictions obo:RO_0000087op some obo:OBI_0000112c

nasopharyngeal aspirate specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000914
Super-classes obo:OBI_0100051c
Restrictions obo:RO_0000087op some obo:OBI_0000112c

freezing storagec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000915
Super-classes (ub50bL10017C29c and ub50bL10031C13c)
obo:OBI_0302893c
Restrictions obo:OBI_0000417op some obo:OBI_0000806c

nasal swab specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000917
Super-classes obo:OBI_0100051c
Restrictions obo:RO_0000087op some obo:OBI_0000112c

labeled RNA extractc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000921
Super-classes obo:OBI_0001143c
(ub50bL10082C29c and ub50bL10096C13c)
Restrictions obo:OBI_0000643op some obo:CHEBI_33697c

frozen specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000922
Super-classes obo:OBI_0001472c

labeled specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000924
Super-classes obo:OBI_0001936c
obo:OBI_0000953c
Sub-classes obo:OBI_0001143c

lyophilization storagec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000927
Description

can link to freezing-dying equipment, such as freeze-dryer, rotary evaporator, if needed
Super-classes obo:OBI_0302893c
Restrictions obo:OBI_0000293op some obo:BFO_0000040c
obo:OBI_0000417op some obo:OBI_0000806c

material separation devicec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000932
Super-classes obo:OBI_0000968c
Sub-classes obo:OBI_0400168c
obo:OBI_0000151c
obo:OBI_0400106c

paraffin specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000950
Super-classes obo:OBI_0001472c

processed specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000953
Description

A tissue sample that has been sliced and stained for a histology study.
Super-classes obo:OBI_0100051c
obo:OBI_0000047c
Sub-classes obo:OBI_0001010c
obo:OBI_1110041c
obo:OBI_0100016c
obo:OMIABIS_0000050c
obo:OBI_0100017c
obo:OBI_1000049c
obo:OBI_1110116c
obo:OBI_0000924c
obo:OBI_0302716c

lyophilized specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000965
Super-classes obo:OBI_0001472c

devicec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000968
Super-classes obo:OBI_0000047c
Restrictions obo:OBI_0000312op some obo:OBI_0000094c
obo:RO_0000085op some obo:BFO_0000034c
Sub-classes obo:OBI_0000932c
obo:OBI_0000832c

fresh specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000971
Super-classes obo:OBI_0001472c

paraffin storagec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000977
Description

need to specify paraffin or wax is one of specified input of the process
Super-classes obo:OBI_0302893c
Restrictions obo:OBI_0000293op some (obo:OBI_0100026c or obo:UBERON_0000465c)
obo:OBI_0000417op some obo:OBI_0000806c

agar stab specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000981
Super-classes obo:OBI_0001472c

questionnairec # Classes

URI http://purl.obolibrary.org/obo/OBI_0001000
Super-classes obo:IAO_0000310c
Sub-classes obo:ICO_0000140c
obo:ICO_0000170c

agar stab storagec # Classes

URI http://purl.obolibrary.org/obo/OBI_0001003
Description

need to specify that agar is one of input for this process
Super-classes obo:OBI_0302893c
Restrictions obo:OBI_0000417op some obo:OBI_0000806c
obo:OBI_0000293op some obo:OBI_0100060c

nucleic acid extractc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001010
Super-classes obo:OBI_0000423c
obo:OBI_0000953c
(ub50bL10460C29c and ub50bL10465C13c)
Restrictions obo:OBI_0000643op some obo:CHEBI_33696c
Sub-classes obo:OBI_0000880c
obo:OBI_0001051c

DNA extractc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001051
Super-classes obo:OBI_0001010c
Restrictions obo:OBI_0000643op some obo:CHEBI_16991c
obo:OBI_0000312op some obo:OBI_0000257c
Sub-classes obo:OBI_0000834c

labeled nucleic acid extractc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001143
Super-classes (ub50bL10509C29c and ub50bL10523C13c)
obo:OBI_0000924c
Restrictions obo:OBI_0000643op some obo:CHEBI_33696c
Sub-classes obo:OBI_0000921c
obo:OBI_0000908c

genotype informationc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001305
Super-classes obo:OBI_0001404c

genetic characteristics informationc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001404
Super-classes obo:IAO_0000027c
Sub-classes obo:OBI_0001305c

cell specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001468
Super-classes obo:OBI_0100051c
Restrictions obo:BFO_0000051op some obo:CL_0000000c
obo:RO_0000087op some obo:OBI_0000112c
Sub-classes obo:OBI_1110116c
obo:OBI_0002127c
obo:OBI_1110041c

specimen with known storage statec # Classes

URI http://purl.obolibrary.org/obo/OBI_0001472
Super-classes obo:OBI_0100051c
Sub-classes obo:OBI_0000950c
obo:OBI_0000965c
obo:OBI_0000971c
obo:OBI_0000922c
obo:OBI_0000981c

specimen from organismc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001479
Super-classes obo:OBI_0100051c
Sub-classes obo:OBI_0002505c
obo:OBI_0002522c
obo:OBI_0002530c
obo:OBI_0002507c
obo:OBI_0002510c
obo:OBI_0002513c
obo:OBI_0002537c
obo:OBI_0002542c
obo:OBI_0002506c
obo:OBI_0002508c
obo:OBI_0002527c
obo:OBI_0002512c
obo:OBI_0002525c
obo:OBI_0002500c
obo:OBI_0002519c
obo:OBI_0002515c
obo:OBI_0002528c
obo:OBI_0002504c
obo:OBI_0002540c
obo:OBI_0000651c
obo:OBI_0000655c
obo:OBI_0002535c
obo:OBI_0002531c
obo:OBI_0002502c
obo:OBI_0002523c
obo:OBI_0002526c
obo:OBI_0002521c
obo:OBI_0002503c
obo:OBI_0002538c
obo:OBI_0002524c
obo:OBI_0002517c
obo:OBI_0002501c
obo:OBI_0002532c
obo:OBI_0002509c
obo:OBI_0002516c
obo:OBI_0002518c
obo:OBI_0002541c
obo:OBI_0002539c
obo:OBI_0002533c
obo:OBI_0002514c
obo:OBI_0002529c
obo:OBI_0002511c
obo:OBI_0002534c
obo:OBI_0002520c
obo:OBI_0000671c
obo:OBI_1000049c
obo:OBI_0002536c

specimen with pre- or post-mortem statusc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001506
Super-classes obo:OBI_0100051c
Sub-classes obo:OBI_0000873c
obo:OBI_0000902c

investigation titlec # Classes

URI http://purl.obolibrary.org/obo/OBI_0001622
Source NIAID GSCID-BRC
Super-classes obo:IAO_0000300c
Restrictions obo:IAO_0020012op some obo:OBI_0000066c
obo:IAO_0000219op some obo:OBI_0000066c
Sub-classes obo:ICO_0000066c

conclusion based on datac # Classes

URI http://purl.obolibrary.org/obo/OBI_0001909
Super-classes obo:IAO_0000030c
Restrictions obo:OBI_0000312op some obo:OBI_0000338c
obo:OBI_0000124op some obo:IAO_0000027c
In domain of obo:OBI_0000124op

cell freezing mediumc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001912
Super-classes obo:OBI_0000047c

scalar value specificationc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001931
Super-classes obo:OBI_0001933c
Restrictions obo:OBI_0001937dp min 1
obo:IAO_0000039op min 1

value specificationc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001933
Super-classes obo:IAO_0000030c
Sub-classes obo:OBI_0001931c
In domain of obo:OBI_0001937dp
In range of obo:OBI_0001938op

molecular-labeled materialc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001936
Super-classes obo:OBI_0000047c
Sub-classes obo:OBI_0000924c

grant agencyc # Classes

URI http://purl.obolibrary.org/obo/OBI_0001942
Super-classes obo:OBI_0000245c
Sub-classes obo:OBI_0000844c

IHC slide stainingc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002123
Super-classes (obo:OBI_0302887c and ub50bL10863C13c)
obo:OBI_0302887c

H&E slide stainingc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002124
Super-classes (obo:OBI_0302887c and ub50bL10883C13c)
obo:OBI_0302887c

H&E-stained fixed tissue slide specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002125
Super-classes obo:OMIABIS_0000052c
(obo:OMIABIS_0000052c and ub50bL10903C13c)

IHC-stained fixed tissue slide specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002126
Super-classes obo:OMIABIS_0000052c
(obo:OMIABIS_0000052c and ub50bL10924C13c)

single cell specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002127
Super-classes obo:OBI_0001468c

amniotic fluid specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002500
Super-classes obo:OBI_0001479c

bile specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002501
Super-classes obo:OBI_0001479c

cerebrospinal fluid specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002502
Super-classes obo:OBI_0001479c

feces specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002503
Super-classes obo:OBI_0001479c

digestive system fluid or secretion specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002504
Super-classes obo:OBI_0001479c

milk specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002505
Super-classes obo:OBI_0001479c

pericardial fluid specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002506
Super-classes obo:OBI_0001479c

saliva specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002507
Super-classes obo:OBI_0001479c

sputum specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002508
Super-classes obo:OBI_0001479c

sweat specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002509
Super-classes obo:OBI_0001479c

synovial fluid specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002510
Super-classes obo:OBI_0001479c

vitreous humor specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002511
Super-classes obo:OBI_0001479c

bone marrow specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002512
Super-classes obo:OBI_0001479c

placenta specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002513
Super-classes obo:OBI_0001479c

peritoneal fluid specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002514
Super-classes obo:OBI_0001479c

pleural fluid specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002515
Super-classes obo:OBI_0001479c

brain specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002516
Super-classes obo:OBI_0001479c

hair specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002517
Super-classes obo:OBI_0001479c

prostate gland specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002518
Super-classes obo:OBI_0001479c

skeletal muscle tissue specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002519
Super-classes obo:OBI_0001479c

heart specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002520
Super-classes obo:OBI_0001479c

renal medulla specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002521
Super-classes obo:OBI_0001479c

adrenal gland specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002522
Super-classes obo:OBI_0001479c

breast specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002523
Super-classes obo:OBI_0001479c

urinary bladder specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002524
Super-classes obo:OBI_0001479c

tibial artery specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002525
Super-classes obo:OBI_0001479c

skin of body specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002526
Super-classes obo:OBI_0001479c

pancreas specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002527
Super-classes obo:OBI_0001479c

stomach specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002528
Super-classes obo:OBI_0001479c

pituitary gland specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002529
Super-classes obo:OBI_0001479c

adipose tissue specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002530
Super-classes obo:OBI_0001479c

cortex of kidney specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002531
Super-classes obo:OBI_0001479c

esophagus mucosa specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002532
Super-classes obo:OBI_0001479c

colon specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002533
Super-classes obo:OBI_0001479c

lung specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002534
Super-classes obo:OBI_0001479c

esophagus muscularis mucosa specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002535
Super-classes obo:OBI_0001479c

cerebral cortex specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002536
Super-classes obo:OBI_0001479c

thyroid gland specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002537
Super-classes obo:OBI_0001479c

cerebellum specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002538
Super-classes obo:OBI_0001479c

tibial nerve specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002539
Super-classes obo:OBI_0001479c

coronary artery specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002540
Super-classes obo:OBI_0001479c

spleen specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002541
Super-classes obo:OBI_0001479c

aorta specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0002542
Super-classes obo:OBI_0001479c

blood plasma specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0100016
Super-classes (obo:BFO_0000040c and ub50bL12259C13c)
obo:OBI_0000953c
Restrictions obo:OBI_0000312op some (obo:OBI_0600014c and ub50bL12271C17c)

blood serum specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0100017
Super-classes obo:OBI_0000953c
Restrictions obo:RO_0000087op some obo:OBI_0000112c
obo:OBI_0000312op some (ub50bL12295C33c and ub50bL12302C17c)

organismc # Classes

URI http://purl.obolibrary.org/obo/OBI_0100026
Super-classes obo:BFO_0000040c
Sub-classes obo:NCBITaxon_2759c
obo:NCBITaxon_10239c
obo:NCBITaxon_2157c
obo:NCBITaxon_2c
obo:NCBITaxon_9606c

specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_0100051
Super-classes obo:BFO_0000040c
Sub-classes obo:OBI_0001506c
obo:OBI_0000747c
obo:OBI_0001472c
obo:OBI_0000953c
obo:OBI_0000680c
obo:OBI_0000914c
obo:OBI_0100067c
obo:OBI_0001468c
obo:OBI_0000917c
obo:OBI_0001479c
obo:OBI_0000909c

cultured cell populationc # Classes

URI http://purl.obolibrary.org/obo/OBI_0100060
Description

The extent of a 'cultured cell population' is restricted only in that all cell members must share a propagation history (ie be derived through a common lineage of passages from an initial culture). In being defined in this way, this class can be used to refer to the populations that researchers actually use in the practice of science - ie are the inputs to culturing, experimentation, and sharing. The cells in such populations will be a relatively uniform population as they have experienced similar selective pressures due to their continuous co-propagation. And this population will also have a single passage number, again owing to their common passaging history. Cultured cell populations represent only a collection of cells (ie do not include media, culture dishes, etc), and include populations of cultured unicellular organisms or cultured multicellular organism cells. They can exist under active culture, stored in a quiescent state for future use, or applied experimentally.
Super-classes obo:OBI_0000047c
Restrictions obo:OBI_0000643op some obo:CL_0000010c
obo:OBI_0000312op some obo:OBI_0600024c
obo:OBI_0000643op only obo:CL_0000010c

organ sectionc # Classes

URI http://purl.obolibrary.org/obo/OBI_0100066
Super-classes obo:OBI_0000047c
Restrictions obo:RO_0001000op some obo:UBERON_0000465c
obo:OBI_0000312op some (obo:OBI_0000341c or obo:OBI_0600005c)

bronchial alveolar lavagec # Classes

URI http://purl.obolibrary.org/obo/OBI_0100067
Super-classes obo:OBI_0100051c
Restrictions obo:OBI_0000312op only obo:OBI_0600044c
obo:RO_0000087op some obo:OBI_0000112c

data transformationc # Classes

URI http://purl.obolibrary.org/obo/OBI_0200000
Super-classes obo:OBI_0000011c

pool of specimensc # Classes

URI http://purl.obolibrary.org/obo/OBI_0302716
Super-classes obo:OBI_0000953c

extractionc # Classes

URI http://purl.obolibrary.org/obo/OBI_0302884
Super-classes obo:OBI_0600014c
Restrictions obo:OBI_0000417op some obo:OBI_0000681c
Sub-classes obo:OBI_0666667c

filtrationc # Classes

URI http://purl.obolibrary.org/obo/OBI_0302885
Super-classes obo:OBI_0600014c
Restrictions obo:RO_0000057op some obo:OBI_0000151c
obo:OBI_0000417op some obo:OBI_0000681c

centrifugationc # Classes

URI http://purl.obolibrary.org/obo/OBI_0302886
Super-classes obo:OBI_0600014c
Restrictions obo:RO_0000057op some obo:OBI_0400106c
obo:OBI_0000417op some obo:OBI_0000681c

stainingc # Classes

URI http://purl.obolibrary.org/obo/OBI_0302887
Super-classes obo:OBI_0000094c
Restrictions obo:OBI_0000417op some obo:OBI_0000456c
Sub-classes obo:OBI_0002123c
obo:OBI_0002124c

storagec # Classes

URI http://purl.obolibrary.org/obo/OBI_0302893
Super-classes obo:OBI_0000838c
Restrictions obo:OBI_0000417op some obo:OBI_0000806c
obo:OBI_0000293op some obo:BFO_0000040c
Sub-classes obo:OBI_0001003c
obo:OBI_0000977c
obo:OBI_0000927c
obo:OBI_0000915c

centrifugec # Classes

URI http://purl.obolibrary.org/obo/OBI_0400106
Super-classes obo:OBI_0000832c
obo:OBI_0000932c
Restrictions obo:RO_0000085op some obo:OBI_0000453c
obo:RO_0000085op some (obo:OBI_0000372c and ub50bL12616C17c)
obo:BFO_0000051op some (obo:OBI_0000372c and ub50bL12616C17c)

microtomec # Classes

URI http://purl.obolibrary.org/obo/OBI_0400168
Super-classes obo:OBI_0000932c
Restrictions obo:RO_0000085op some obo:OBI_0000372c
obo:RO_0000085op some obo:OBI_0000379c

study designc # Classes

URI http://purl.obolibrary.org/obo/OBI_0500000
Super-classes obo:IAO_0000104c
Restrictions obo:BFO_0000051op some obo:OBI_0000272c

eligibility criterionc # Classes

URI http://purl.obolibrary.org/obo/OBI_0500026
Super-classes obo:IAO_0000033c
Sub-classes obo:OBI_0500028c
obo:OBI_0500027c

inclusion criteriac # Classes

URI http://purl.obolibrary.org/obo/OBI_0500027
Super-classes obo:OBI_0500026c

exclusion criterionc # Classes

URI http://purl.obolibrary.org/obo/OBI_0500028
Super-classes obo:OBI_0500026c

collecting specimen from organismc # Classes

URI http://purl.obolibrary.org/obo/OBI_0600005
Super-classes obo:OBI_0000659c
Restrictions obo:OBI_0000299op some obo:OBI_0100051c
obo:OBI_0000293op some obo:OBI_0100026c
obo:OBI_0000417op some obo:OBI_0000684c
Sub-classes obo:OBI_0600044c

material component separationc # Classes

URI http://purl.obolibrary.org/obo/OBI_0600014
Super-classes obo:OBI_0000094c
Restrictions obo:OBI_0000299op some obo:BFO_0000040c
obo:OBI_0000293op some obo:BFO_0000040c
Sub-classes obo:OBI_0302886c
obo:OBI_0302885c
obo:OBI_0600044c
obo:OBI_0600052c
obo:OBI_1110046c
obo:OBI_0302884c

maintaining cell culturec # Classes

URI http://purl.obolibrary.org/obo/OBI_0600024
Super-classes obo:OBI_0000838c
Restrictions obo:OBI_0000299op some obo:OBI_0100060c
obo:OBI_0000293op some (obo:OBI_0000079c or obo:OBI_0001912c)
obo:OBI_0000417op some obo:OBI_0000806c
obo:OBI_0000293op some obo:OBI_0100060c

establishing cell culturec # Classes

URI http://purl.obolibrary.org/obo/OBI_0600036
Description

A 'cell culture' as used here referes to a new lineage of cells in culture deriving from a single biological source.. New cultures are established through the initial isolation and culturing of cells from an organismal source, or through changes in an existing cell culture or line that result in a new culture with unique characteristics. This can occur through the passaging/selection of a primary culture into a secondary culture or line, or experimental modifications of an existing cell culture or line such as an immortalization process or other stable genetic modification. This class covers establishment of cultures of either multicellular organism cells or unicellular organisms.
Super-classes obo:OBI_0000094c
Restrictions obo:OBI_0000417op some obo:OBI_0000456c
obo:OBI_0000299op some obo:OBI_0100060c
obo:OBI_0000293op some obo:CL_0000000c
obo:OBI_0000293op some obo:OBI_0000079c

addition of molecular labelc # Classes

URI http://purl.obolibrary.org/obo/OBI_0600038
Super-classes obo:OBI_0000094c
Restrictions obo:OBI_0000417op some obo:OBI_0000456c
obo:OBI_0000293op some obo:REO_0000280c
obo:OBI_0000293op some obo:OBI_1110109c
obo:OBI_0000299op some obo:OBI_0001936c

lavagec # Classes

URI http://purl.obolibrary.org/obo/OBI_0600044
Super-classes obo:OBI_0600005c
obo:OBI_0600014c
Restrictions obo:OBI_0000417op some obo:OBI_0000639c

dialysisc # Classes

URI http://purl.obolibrary.org/obo/OBI_0600052
Super-classes obo:OBI_0600014c
Restrictions obo:OBI_0000417op some obo:OBI_0000681c

RNA extractionc # Classes

URI http://purl.obolibrary.org/obo/OBI_0666666
Super-classes obo:OBI_0666667c
Restrictions obo:OBI_0000299op some obo:CHEBI_33697c
Sub-classes obo:OBI_0000849c
obo:OBI_0000848c
obo:OBI_0000859c
obo:OBI_0000888c
obo:OBI_0000855c

nucleic acid extractionc # Classes

URI http://purl.obolibrary.org/obo/OBI_0666667
Super-classes obo:OBI_0302884c
Restrictions obo:OBI_0000299op some obo:CHEBI_33696c
obo:OBI_0000293op some (obo:OBI_0000671c or obo:OBI_0100026c or obo:OBI_0100060c)
Sub-classes obo:OBI_0000257c
obo:OBI_0666666c

whole mount tissuec # Classes

URI http://purl.obolibrary.org/obo/OBI_1000049
Super-classes obo:OBI_0000680c
obo:OBI_0000953c
obo:OBI_0001479c
Restrictions obo:RO_0001000op some obo:UBERON_0000465c
obo:OBI_0000312op some obo:OBI_0000341c

lymph node cell specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_1110041
Super-classes obo:OBI_0000953c
obo:OBI_0001468c
Restrictions obo:OBI_0000312op some (obo:OBI_1110046c and ub50bL12960C17c)

organ harvestingc # Classes

URI http://purl.obolibrary.org/obo/OBI_1110046
Super-classes obo:OBI_0600014c

target of material additionc # Classes

URI http://purl.obolibrary.org/obo/OBI_1110109
Super-classes obo:BFO_0000040c

splenocyte specimenc # Classes

URI http://purl.obolibrary.org/obo/OBI_1110116
Super-classes obo:OBI_0001468c
obo:OBI_0000953c
Restrictions obo:OBI_0000312op some (obo:OBI_1110046c and ub50bL13015C17c)

clinical findingc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000014
Super-classes obo:IAO_0000027c
Sub-classes obo:OGMS_0000018c

laboratory findingc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000018
Super-classes obo:OGMS_0000014c

disorderc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000045
Super-classes obo:BFO_0000040c
Sub-classes obo:OGMS_0000102c

laboratory testc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000056
Super-classes obo:OBI_0000011c

bodily processc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000060
Super-classes obo:BFO_0000015c
Sub-classes obo:OAE_0000001c

treatmentc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000090
Super-classes obo:OBI_0000011c
obo:BFO_0000015c
Sub-classes obo:ICO_0000110c

health care processc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000096
Super-classes obo:OBI_0000011c
Sub-classes obo:OGMS_0000104c

injuryc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000102
Super-classes obo:OGMS_0000045c
Sub-classes obo:ICO_0000100c

diagnostic processc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000104
Super-classes obo:OGMS_0000096c

biobank organizationc # Classes

URI http://purl.obolibrary.org/obo/OMIABIS_0000010
Super-classes obo:OBI_0000245c

departmentc # Classes

URI http://purl.obolibrary.org/obo/OMIABIS_0000017
Super-classes obo:OBI_0000245c

fixed tissue specimenc # Classes

URI http://purl.obolibrary.org/obo/OMIABIS_0000050
Super-classes obo:OBI_0000953c
Sub-classes obo:OMIABIS_0000052c

fixed tissue slide specimenc # Classes

URI http://purl.obolibrary.org/obo/OMIABIS_0000052
Super-classes obo:OMIABIS_0000050c
Sub-classes obo:OBI_0002126c
obo:OBI_0002125c

medical recordc # Classes

URI http://purl.obolibrary.org/obo/OMIABIS_0001026
Super-classes obo:IAO_0000310c

health care provider organization rolec # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000015
Super-classes obo:OMRSE_00000027c
Sub-classes obo:OMRSE_00000054c

collection of organismsc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000022
Description

Any arbitrary collection of organisms. They need not be of the same taxonomic class.

Super-classes obo:BFO_0000040c
Sub-classes obo:OMRSE_00000023c

collection of humansc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000023
Description

An object aggregate all of whose components are human beings.
Super-classes obo:OMRSE_00000022c

role in human social processesc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000024
Super-classes obo:BFO_0000023c
Sub-classes obo:OMRSE_00000087c
obo:OMRSE_00000025c

organization social rolec # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000025
Super-classes obo:OMRSE_00000024c
Sub-classes obo:OMRSE_00000027c

organization health care rolec # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000027
Super-classes obo:OMRSE_00000025c
Sub-classes obo:OMRSE_00000015c

aggregate of organizationsc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000033
Description

It is often convenient to group organizations together that otherwise might not even interact with one another.

Super-classes obo:BFO_0000040c

legal person rolec # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000038
Super-classes obo:BFO_0000023c

hospital rolec # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000054
Super-classes obo:OMRSE_00000015c

hospital organizationc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000056
Super-classes obo:OBI_0000245c

employer rolec # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000087
Super-classes obo:OMRSE_00000024c

communicationc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000192
Super-classes obo:BFO_0000015c
Sub-classes obo:OMRSE_00000198c

information content entity-request processc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00000198
Super-classes obo:OMRSE_00000192c

education processc # Classes

URI http://purl.obolibrary.org/obo/OMRSE_00002029
Super-classes obo:OBI_0000011c

hospital governing body rolec # Classes

URI http://purl.obolibrary.org/obo/OOSTT_00000062
Super-classes obo:BFO_0000023c

committee member rolec # Classes

URI http://purl.obolibrary.org/obo/OOSTT_00000117
Super-classes obo:BFO_0000023c

morphologyc # Classes

URI http://purl.obolibrary.org/obo/PATO_0000051
Super-classes obo:PATO_0001241c
Sub-classes obo:PATO_0000122c

lengthc # Classes

URI http://purl.obolibrary.org/obo/PATO_0000122
Super-classes obo:PATO_0000051c

massc # Classes

URI http://purl.obolibrary.org/obo/PATO_0000125
Super-classes obo:PATO_0001018c

physical qualityc # Classes

URI http://purl.obolibrary.org/obo/PATO_0001018
Super-classes obo:PATO_0001241c
Sub-classes obo:PATO_0000125c

quality of a single physical entityc # Classes

URI http://purl.obolibrary.org/obo/PATO_0001237
Super-classes obo:BFO_0000019c
Sub-classes obo:PATO_0001985c
obo:PATO_0001422c
obo:PATO_0001421c

physical object qualityc # Classes

URI http://purl.obolibrary.org/obo/PATO_0001241
Super-classes obo:BFO_0000019c
Sub-classes obo:PATO_0000051c
obo:PATO_0001018c

alivec # Classes

URI http://purl.obolibrary.org/obo/PATO_0001421
Super-classes obo:PATO_0001237c

deadc # Classes

URI http://purl.obolibrary.org/obo/PATO_0001422
Super-classes obo:PATO_0001237c

frozenc # Classes

URI http://purl.obolibrary.org/obo/PATO_0001985
Super-classes obo:PATO_0001237c

molecular label rolec # Classes

URI http://purl.obolibrary.org/obo/REO_0000171
Super-classes obo:BFO_0000023c

molecular labelc # Classes

URI http://purl.obolibrary.org/obo/REO_0000280
Super-classes obo:CHEBI_23367c

pituitary glandc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000007
Super-classes obo:UBERON_0000465c

lymph nodec # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000029
Super-classes obo:UBERON_0000465c

amniotic fluidc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000173
Super-classes obo:UBERON_0000463c

bloodc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000178
Super-classes obo:UBERON_0000463c

breastc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000310
Super-classes obo:UBERON_0000465c

renal medullac # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000362
Super-classes obo:UBERON_0000481c

organism substancec # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000463
Super-classes obo:UBERON_0000465c
Sub-classes obo:UBERON_0001087c
obo:UBERON_0000173c
obo:UBERON_0007311c
obo:UBERON_0001089c
obo:UBERON_0006911c
obo:UBERON_0001913c
obo:UBERON_0002409c
obo:UBERON_0001359c
obo:UBERON_0001988c
obo:UBERON_0001970c
obo:UBERON_0001090c
obo:UBERON_0001797c
obo:UBERON_0001268c
obo:UBERON_0000178c
obo:UBERON_0001836c
obo:UBERON_0001088c

material anatomical entityc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000465
Super-classes obo:BFO_0000040c
Sub-classes obo:UBERON_0000007c
obo:UBERON_0000945c
obo:UBERON_0001264c
obo:UBERON_0000947c
obo:UBERON_0000463c
obo:UBERON_0001155c
obo:UBERON_0002469c
obo:UBERON_0001987c
obo:UBERON_0002369c
obo:UBERON_0002046c
obo:UBERON_0000479c
obo:UBERON_0000481c
obo:UBERON_0002106c
obo:UBERON_0001037c
obo:UBERON_0001225c
obo:UBERON_0000948c
obo:UBERON_0000029c
obo:UBERON_0002367c
obo:UBERON_0007610c
obo:UBERON_0001255c
obo:UBERON_0002048c
obo:UBERON_0000310c
obo:UBERON_0002097c
obo:UBERON_0000955c
obo:UBERON_0001621c

anatomical clusterc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000477
Super-classes obo:BFO_0000040c
Sub-classes obo:UBERON_0001323c
obo:UBERON_0000956c

tissuec # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000479
Super-classes obo:UBERON_0000465c
Sub-classes obo:UBERON_0001013c
obo:UBERON_0002371c
obo:UBERON_0001134c
obo:UBERON_0004648c

multi-tissue structurec # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000481
Super-classes obo:UBERON_0000465c
Sub-classes obo:UBERON_0002037c
obo:UBERON_0000362c

stomachc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000945
Super-classes obo:UBERON_0000465c

aortac # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000947
Super-classes obo:UBERON_0000465c

heartc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000948
Super-classes obo:UBERON_0000465c

brainc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000955
Super-classes obo:UBERON_0000465c

cerebral cortexc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000956
Super-classes obo:UBERON_0000477c

adipose tissuec # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001013
Super-classes obo:UBERON_0000479c

strand of hairc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001037
Super-classes obo:UBERON_0000465c

pleural fluidc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001087
Super-classes obo:UBERON_0000463c

urinec # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001088
Super-classes obo:UBERON_0000463c

sweatc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001089
Super-classes obo:UBERON_0000463c

synovial fluidc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001090
Super-classes obo:UBERON_0000463c

skeletal muscle tissuec # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001134
Super-classes obo:UBERON_0000479c

colonc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001155
Super-classes obo:UBERON_0000465c

cortex of kidneyc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001225
Super-classes obo:UBERON_0000465c

urinary bladderc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001255
Super-classes obo:UBERON_0000465c

pancreasc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001264
Super-classes obo:UBERON_0000465c

peritoneal fluidc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001268
Super-classes obo:UBERON_0000463c

tibial nervec # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001323
Super-classes obo:UBERON_0000477c

cerebrospinal fluidc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001359
Super-classes obo:UBERON_0000463c

coronary arteryc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001621
Super-classes obo:UBERON_0000465c

vitreous humorc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001797
Super-classes obo:UBERON_0000463c

salivac # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001836
Super-classes obo:UBERON_0000463c

milkc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001913
Super-classes obo:UBERON_0000463c

bilec # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001970
Super-classes obo:UBERON_0000463c

placentac # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001987
Super-classes obo:UBERON_0000465c

fecesc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0001988
Super-classes obo:UBERON_0000463c

cerebellumc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0002037
Super-classes obo:UBERON_0000481c

thyroid glandc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0002046
Super-classes obo:UBERON_0000465c

lungc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0002048
Super-classes obo:UBERON_0000465c

skin of bodyc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0002097
Super-classes obo:UBERON_0000465c

spleenc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0002106
Super-classes obo:UBERON_0000465c

prostate glandc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0002367
Super-classes obo:UBERON_0000465c

adrenal glandc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0002369
Super-classes obo:UBERON_0000465c

bone marrowc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0002371
Super-classes obo:UBERON_0000479c

pericardial fluidc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0002409
Super-classes obo:UBERON_0000463c

esophagus mucosac # Classes

URI http://purl.obolibrary.org/obo/UBERON_0002469
Super-classes obo:UBERON_0000465c

esophagus muscularis mucosac # Classes

URI http://purl.obolibrary.org/obo/UBERON_0004648
Super-classes obo:UBERON_0000479c

digestive system fluid or secretionc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0006911
Super-classes obo:UBERON_0000463c

sputumc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0007311
Super-classes obo:UBERON_0000463c

tibial arteryc # Classes

URI http://purl.obolibrary.org/obo/UBERON_0007610
Super-classes obo:UBERON_0000465c

length unitc # Classes

URI http://purl.obolibrary.org/obo/UO_0000001
Super-classes obo:IAO_0000003c
In range of obo:IAO_0000407op

mass unitc # Classes

URI http://purl.obolibrary.org/obo/UO_0000002
Super-classes obo:IAO_0000003c

time unitc # Classes

URI http://purl.obolibrary.org/obo/UO_0000003
Super-classes obo:IAO_0000003c

obsolete ICO Classes to Move to RUBRICc # Classes

URI http://purl.obolibrary.org/obo/ico.owl#Belongs_in_CRO
Description

This is a dummy class to be deprecated after it has fulfilled its organization purposes
Super-classes oboInOwl:ObsoleteClassc

obsolete ICO Classes to Move to D-Actsc # Classes

URI http://purl.obolibrary.org/obo/ico.owl#Belongs_in_D-Acts
Description

This is a dummy class to be deprecated after it has fulfilled its organization purposes
Super-classes oboInOwl:ObsoleteClassc

Topicc # Classes

URI http://purl.obolibrary.org/obo/topic_0003
Super-classes obo:IAO_0000030c

pressurec # Classes

URI http://purl.org/obo/owl/PATO#PATO_0001025
Super-classes obo:BFO_0000019c

vulnerabilityc # Classes

URI http://purl.unep.org/sdg/SDGIO_00000024
Super-classes obo:BFO_0000016c
Sub-classes obo:ICO_0000263c
obo:ICO_0000264c

legal namec # Classes

URI http://semanticscience.org/resource/SIO_000184
Super-classes obo:IAO_0000302c

Versionc # Classes

URI http://usefulinc.com/ns/doap#Version
Is Defined By http://usefulinc.com/ns/doap
Super-classes owl:Thingc
Members http://purl.obolibrary.org/obo/obi/2017-02-22/obi.owl

Obsolete Classc # Classes

URI http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
Super-classes owl:Thingc
Sub-classes obo:ICO_0000168c
obo:IAO_0000141c
obo:DUO_0000002c
obo:ICO_0000114c
obo:IAO_0000059c
obo:ICO_0000184c
obo:IAO_0000008c
obo:IAO_0021002c
obo:ICO_0000180c
obo:ICO_0000200c
obo:IAO_0000035c
obo:ICO_0000271c
obo:ICO_0000026c
obo:ICO_0000194c
obo:ICO_0000082c
obo:DUO_0000005c
obo:IAO_0000097c
obo:ICODEV_0000065c
obo:IAO_0000012c
obo:IAO_0021018c
obo:IAO_0021020c
obo:IAO_0021004c
obo:ICO_0000261c
obo:ICO_0000017c
obo:ICO_0000075c
obo:IAO_0021005c
obo:ICO_0000102c
obo:BFO_0000005c
obo:ICO_0000052c
obo:IAO_0000182c
obo:ICO_0000241c
obo:ICO_0000119c
obo:IAO_0000024c
obo:IAO_0000047c
obo:ICO_0000153c
obo:ICO_0000245c
obo:ICO_0000206c
obo:ICO_0000203c
obo:ICO_0000077c
obo:ICO_0000152c
obo:ICO_0000068c
obo:IAO_0000093c
obo:IAO_0021010c
obo:IAO_0021030c
obo:ICO_0000139c
obo:ICO_0000122c
obo:ICO_0000115c
obo:ICO_0000050c
obo:IAO_0000128c
obo:IAO_0000091c
obo:ICO_0000063c
obo:ICO_0000096c
obo:ICO_0000055c
obo:IAO_0021014c
obo:IAO_0000019c
obo:ICO_0000094c
obo:ICO_0000090c
http://purl.obolibary.org/obo/IAO_0021001c
obsolete ICO Classes to Move to D-Actsc
obo:ICO_0000097c
obo:ICO_0000191c
obo:ICODEV_0000066c
obo:IAO_0021000c
obo:IAO_0000576c
obo:ICO_0000143c
obo:ICO_0000137c
obo:IAO_0000105c
obo:IAO_0000018c
obo:IAO_0021015c
obo:ICO_0000028c
obo:ICO_0000155c
obo:ICO_0000270c
obo:ICO_0000182c
obsolete ICO Classes to Move to RUBRICc
obo:DUO_0000014c
obo:DUO_0000003c
obo:IAO_0021017c
obo:ICO_0000106c
obo:ICO_0000076c
obo:ICO_0000232c
obo:ICO_0000166c
obo:ICO_0000176c
obo:ICO_0000071c
obo:ICO_0000167c

descriptive information content entityc # Classes

URI http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity
Super-classes obo:IAO_0000030c
Sub-classes obo:ICO_0000259c
obo:ICO_0000303c
obo:ICO_0000305c
obo:ICO_0000253c
obo:ICO_0000275c
obo:ICO_0000192c
obo:ICO_0000251c
obo:ICO_0000008c
obo:ICO_0000282c
obo:ICO_0000308c
obo:ICO_0000190c
obo:ICO_0000266c
obo:ICO_0000284c
obo:ICO_0000272c
obo:ICO_0000291c
obo:ICO_0000274c
obo:ICO_0000276c
obo:ICO_0000296c
obo:ICO_0000281c
obo:ICO_0000279c
obo:ICO_0000260c
obo:ICO_0000283c
obo:ICO_0000277c

governmentc # Classes

URI http://www.ontologyrepository.com/CommonCoreOntologies/Government
Super-classes obo:OBI_0000245c

stasisc # Classes

URI http://www.ontologyrepository.com/CommonCoreOntologies/Stasis
Super-classes obo:BFO_0000015c
Sub-classes cco:StasisOfGenericallyDependentContinuantc
obo:ICO_0000428c

stasis of generically dependent continuantc # Classes

URI http://www.ontologyrepository.com/CommonCoreOntologies/StasisOfGenericallyDependentContinuant
Super-classes cco:Stasisc
Sub-classes obo:ICO_0000226c
obo:ICO_0000297c

Thingc # Classes

URI http://www.w3.org/2002/07/owl#Thing
Sub-classes oboInOwl:ObsoleteClassc
obo:BFO_0000001c
doap:Versionc
Members obo:IAO_0000125
obo:IAO_0000122
obo:IAO_0000124
http://purl.obolibrary.org/obo/obi/wiki/Releases/2017-02-22
obo:IAO_0000123
http://purl.obolibrary.org/obo/obi/2017-02-22/obi.owl
http://usefulinc.com/ns/doap
obo:IAO_0000103
obo:IAO_0000121
obo:IAO_0000120
obo:IAO_0000226

Object Properties ↑

part ofop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000050
Inverse properties obo:BFO_0000051op

has partop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000051

realized inop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000054
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Description

Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process
Super-properties owl:topObjectProperty
Inverse properties obo:BFO_0000055op
Domain(s) obo:BFO_0000017c
Range(s) obo:BFO_0000015c

realizesop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000055
Is Defined By http://purl.obolibrary.org/obo/iao.owl
Description

Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process
Super-properties owl:topObjectProperty
Domain(s) obo:BFO_0000015c
Range(s) obo:BFO_0000017c

obsolete preceded byop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000060
Description

accidentally included in BFO 1.2 proposal - should have been BFO_0000062

preceded_byop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000062
Source http://www.obofoundry.org/ro/#OBO_REL:preceded_by
Super-properties obo:RO_0002086op
Inverse properties obo:BFO_0000063op
Domain(s) obo:BFO_0000003c
Range(s) obo:BFO_0000003c

precedesop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000063
Domain(s) obo:BFO_0000003c
Range(s) obo:BFO_0000003c

occurs inop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000066
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Description

Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant
Inverse properties obo:BFO_0000067op
Domain(s) obo:BFO_0000003c
Range(s) obo:BFO_0000004c

contains processop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000067
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Description

Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant

exists atop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000108
Is Defined By http://purl.obolibrary.org/obo/bfo.owl

occupies temporal regionop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000155
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-properties obo:BFO_0000108op

is restricted toop # OPs

URI http://purl.obolibrary.org/obo/DUO_0000010

has measurement unit labelop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000039
Super-properties obo:BFO_0000051op
Range(s) obo:IAO_0000003c

obsolete_specifically denotesop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000135
Super-properties oboInOwl:ObsoletePropertyop

is aboutop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000136
Domain(s) obo:IAO_0000030c

mentionsop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000142
Super-properties obo:IAO_0000136op

denotesop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000219
Description

f94d8e3d20e1a4665af4ada66f7b46208b51
Super-properties obo:IAO_0000136op
Inverse properties obo:IAO_0000235op
Domain(s) obo:IAO_0000030c
Range(s) obo:BFO_0000001c

obsolete_materially denotesop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000220
Super-properties oboInOwl:ObsoletePropertyop

is quality measurement ofop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000221
Super-properties obo:IAO_0000136op
Inverse properties obo:IAO_0000417op
Domain(s) obo:IAO_0000109c
Range(s) obo:BFO_0000019c

obsolete_describesop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000222
Super-properties oboInOwl:ObsoletePropertyop

obsolete_representsop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000223
Super-properties oboInOwl:ObsoletePropertyop

denoted byop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000235
Domain(s) obo:BFO_0000001c
Range(s) obo:IAO_0000030c

has coordinate unit labelop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000407
Description

relating a cartesian spatial coordinate datum to a unit label that together with the values represent a point
Super-properties obo:BFO_0000051op
Domain(s) obo:IAO_0000400c
Range(s) obo:UO_0000001c

is duration ofop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000413
Super-properties obo:IAO_0000136op
Domain(s) obo:IAO_0000416c
Range(s) obo:BFO_0000015c

is quality measured asop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000417

is quality specification ofop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000418
Super-properties obo:IAO_0000136op
Inverse properties obo:IAO_0000419op

quality is specified asop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000419

has time stampop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000581
Super-properties obo:BFO_0000051op
Domain(s) obo:IAO_0000582c
Range(s) obo:IAO_0000416c

has measurement datumop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000583
Super-properties obo:BFO_0000051op
Domain(s) obo:IAO_0000582c
Range(s) http://purl.obolibrary.org/obo/IAO_0000109 ub50bL3819C13

obsolete_designatesop # OPs

URI http://purl.obolibrary.org/obo/IAO_0020012
Super-properties oboInOwl:ObsoletePropertyop

is_borrowed_reference_toop # OPs

URI http://purl.obolibrary.org/obo/IAO_0020013
Super-properties owl:topObjectProperty
Domain(s) obo:IAO_0020000c
Range(s) obo:BFO_0000001c

is_fixing_reference_toop # OPs

URI http://purl.obolibrary.org/obo/IAO_0020014

is designated byop # OPs

URI http://purl.obolibrary.org/obo/IAO_0020018

legally revokesop # OPs

URI http://purl.obolibrary.org/obo/IAO_0021011
Super-properties obo:RO_0000057op
Domain(s) obo:IAO_0021009c
Range(s) obo:IAO_0021008c

obsolete_legally transfersop # OPs

URI http://purl.obolibrary.org/obo/IAO_0021012
Super-properties oboInOwl:ObsoletePropertyop

obsolete form signed byop # OPs

URI http://purl.obolibrary.org/obo/ICO_0000067
Super-properties oboInOwl:ObsoletePropertyop

obsolete is associated with review board approval numberop # OPs

URI http://purl.obolibrary.org/obo/ICO_0000130
Super-properties oboInOwl:ObsoletePropertyop
Domain(s) obo:ICO_0000001c
Range(s) obo:ICO_0000111c

obsolete is assigned by organizationop # OPs

URI http://purl.obolibrary.org/obo/ICO_0000132
Super-properties oboInOwl:ObsoletePropertyop

permitsop # OPs

URI http://purl.obolibrary.org/obo/ICO_0000216
Super-properties obo:BFO_0000054op

has agentop # OPs

URI http://purl.obolibrary.org/obo/ICO_0000224
Description

A relation between an instance of Process and an instance of Continuant, where the continuant is a causal participant in the process.
Super-properties obo:RO_0000057op
Inverse properties obo:ICO_0000225op

agent inop # OPs

URI http://purl.obolibrary.org/obo/ICO_0000225
Super-properties obo:RO_0000056op

is_supported_by_dataop # OPs

URI http://purl.obolibrary.org/obo/OBI_0000124
Domain(s) obo:OBI_0001909c
Range(s) obo:IAO_0000027c

has_specified_inputop # OPs

URI http://purl.obolibrary.org/obo/OBI_0000293
Super-properties obo:RO_0000057op
Inverse properties obo:OBI_0000295op
Domain(s) obo:OBI_0000011c

is_specified_input_ofop # OPs

URI http://purl.obolibrary.org/obo/OBI_0000295
Super-properties obo:RO_0000056op
Range(s) obo:OBI_0000011c

has_specified_outputop # OPs

URI http://purl.obolibrary.org/obo/OBI_0000299
Super-properties obo:RO_0000057op owl:topObjectProperty
Inverse properties obo:OBI_0000312op
Domain(s) obo:OBI_0000011c

is_specified_output_ofop # OPs

URI http://purl.obolibrary.org/obo/OBI_0000312
Super-properties obo:RO_0000056op
Range(s) obo:OBI_0000011c

achieves_planned_objectiveop # OPs

URI http://purl.obolibrary.org/obo/OBI_0000417
Inverse properties obo:OBI_0000833op
Domain(s) obo:OBI_0000011c
Range(s) obo:IAO_0000005c

has grainop # OPs

URI http://purl.obolibrary.org/obo/OBI_0000643
Super-properties obo:BFO_0000051op

objective_achieved_byop # OPs

URI http://purl.obolibrary.org/obo/OBI_0000833
Domain(s) obo:IAO_0000005c
Range(s) obo:OBI_0000011c

has value specificationop # OPs

URI http://purl.obolibrary.org/obo/OBI_0001938
Super-properties obo:BFO_0000051op
Domain(s) obo:IAO_0000030c
Range(s) obo:OBI_0001933c

is-aggregate-ofop # OPs

URI http://purl.obolibrary.org/obo/OMRSE_00000020
Description

We anticipate BFO 2.0 including and defining this relation. When it does, we will obsolete this property and declare it equivalent to the BFO 2.0 relation.
Super-properties owl:topObjectProperty

inheres inop # OPs

URI http://purl.obolibrary.org/obo/RO_0000052
Inverse properties obo:RO_0000053op

bearer_ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0000053
Range(s) obo:BFO_0000020c

participates inop # OPs

URI http://purl.obolibrary.org/obo/RO_0000056
Inverse properties obo:RO_0000057op
Domain(s) obo:BFO_0000002c
Range(s) obo:BFO_0000003c

has_participantop # OPs

URI http://purl.obolibrary.org/obo/RO_0000057
Source http://www.obofoundry.org/ro/#OBO_REL:has_participant
Domain(s) obo:BFO_0000003c
Range(s) obo:BFO_0000002c

is concretized asop # OPs

URI http://purl.obolibrary.org/obo/RO_0000058
Super-properties owl:topObjectProperty
Inverse properties obo:RO_0000059op
Domain(s) obo:BFO_0000031c
Range(s) obo:BFO_0000020c

concretizesop # OPs

URI http://purl.obolibrary.org/obo/RO_0000059
Super-properties owl:topObjectProperty
Domain(s) obo:BFO_0000020c
Range(s) obo:BFO_0000031c

function ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0000079
Super-properties obo:RO_0000052op
Inverse properties obo:RO_0000085op
Domain(s) obo:BFO_0000034c

quality ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0000080
Super-properties obo:RO_0000052op
Inverse properties obo:RO_0000086op

role ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0000081
Super-properties obo:RO_0000052op
Inverse properties obo:RO_0000087op

has functionop # OPs

URI http://purl.obolibrary.org/obo/RO_0000085
Super-properties obo:RO_0000053op
Domain(s) obo:BFO_0000004c
Range(s) obo:BFO_0000034c

has qualityop # OPs

URI http://purl.obolibrary.org/obo/RO_0000086
Super-properties obo:RO_0000053op
Range(s) obo:BFO_0000019c

has roleop # OPs

URI http://purl.obolibrary.org/obo/RO_0000087
Super-properties obo:RO_0000053op
Domain(s) obo:BFO_0000004c
Range(s) obo:BFO_0000023c

has dispositionop # OPs

URI http://purl.obolibrary.org/obo/RO_0000091
Super-properties obo:RO_0000053op
Inverse properties obo:RO_0000092op
Domain(s) obo:BFO_0000004c
Range(s) obo:BFO_0000016c

disposition ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0000092
Super-properties obo:RO_0000052op

derives fromop # OPs

URI http://purl.obolibrary.org/obo/RO_0001000
Super-properties owl:topObjectProperty
Inverse properties obo:RO_0001001op
Domain(s) obo:BFO_0000004c
Range(s) obo:BFO_0000004c

derives intoop # OPs

URI http://purl.obolibrary.org/obo/RO_0001001

location ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0001015
Inverse properties obo:RO_0001025op

located inop # OPs

URI http://purl.obolibrary.org/obo/RO_0001025
Source http://www.obofoundry.org/ro/#OBO_REL:located_in
Domain(s) obo:BFO_0000004c (obo:BFO_0000004c and ub50bL13599C13c)
Range(s) http://purl.obolibrary.org/obo/BFO_0000004 ub50bL13609C13 obo:BFO_0000004c

2D boundary ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002000
Inverse properties obo:RO_0002002op

has 2D boundaryop # OPs

URI http://purl.obolibrary.org/obo/RO_0002002
Domain(s) obo:BFO_0000040c
Range(s) obo:BFO_0000141c

before or simultaneous withop # OPs

URI http://purl.obolibrary.org/obo/RO_0002081
Description

Primitive instance level timing relation between events
Super-properties obo:RO_0002222op

simultaneous withop # OPs

URI http://purl.obolibrary.org/obo/RO_0002082
Description

t1 simultaneous_with t2 iff:= t1 before_or_simultaneous_with t2 and not (t1 before t2)
Super-properties obo:RO_0002081op

beforeop # OPs

URI http://purl.obolibrary.org/obo/RO_0002083
Description

t1 before t2 iff:= t1 before_or_simulataneous_with t2 and not (t1 simultaeous_with t2)
Super-properties obo:RO_0002081op

during which endsop # OPs

URI http://purl.obolibrary.org/obo/RO_0002084
Description

Previously had ID http://purl.obolibrary.org/obo/RO_0002122 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range.
Super-properties obo:RO_0002222op
Inverse properties obo:RO_0002093op

ends afterop # OPs

URI http://purl.obolibrary.org/obo/RO_0002086
Description

X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)
Super-properties obo:RO_0002222op

immediately preceded byop # OPs

URI http://purl.obolibrary.org/obo/RO_0002087
Description

X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)
Super-properties obo:BFO_0000062op
Inverse properties obo:RO_0002090op

during which startsop # OPs

URI http://purl.obolibrary.org/obo/RO_0002088
Description

Previously had ID http://purl.obolibrary.org/obo/RO_0002123 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range.
Super-properties obo:RO_0002222op
Inverse properties obo:RO_0002091op

starts beforeop # OPs

URI http://purl.obolibrary.org/obo/RO_0002089
Super-properties obo:RO_0002222op

immediately precedesop # OPs

URI http://purl.obolibrary.org/obo/RO_0002090
Description

X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)
Super-properties obo:BFO_0000063op

starts duringop # OPs

URI http://purl.obolibrary.org/obo/RO_0002091
Description

X starts_during Y iff: (start(Y) before_or_simultaneous_with start(X)) AND (start(X) before_or_simultaneous_with end(Y))
Super-properties obo:RO_0002222op
Domain(s) obo:BFO_0000003c
Range(s) obo:BFO_0000003c

happens duringop # OPs

URI http://purl.obolibrary.org/obo/RO_0002092
Description

X happens_during Y iff: (start(Y) before_or_simultaneous_with start(X)) AND (end(X) before_or_simultaneous_with end(Y))
Super-properties obo:RO_0002093op

ends duringop # OPs

URI http://purl.obolibrary.org/obo/RO_0002093
Description

X ends_during Y iff: ((start(Y) before_or_simultaneous_with end(X)) AND end(X) before_or_simultaneous_with end(Y).

Super-properties obo:RO_0002222op

has active participantop # OPs

URI http://purl.obolibrary.org/obo/RO_0002218
Super-properties obo:RO_0000057op

temporally related toop # OPs

URI http://purl.obolibrary.org/obo/RO_0002222
Description

A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations.
Domain(s) obo:BFO_0000003c
Range(s) obo:BFO_0000003c

startsop # OPs

URI http://purl.obolibrary.org/obo/RO_0002223
Super-properties obo:RO_0002222op
Inverse properties obo:RO_0002224op

starts withop # OPs

URI http://purl.obolibrary.org/obo/RO_0002224
Super-properties obo:RO_0002222op

endsop # OPs

URI http://purl.obolibrary.org/obo/RO_0002229
Super-properties obo:RO_0002222op
Inverse properties obo:RO_0002230op

ends withop # OPs

URI http://purl.obolibrary.org/obo/RO_0002230
Super-properties obo:RO_0002222op

member ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0002350
Super-properties obo:BFO_0000050op
Inverse properties obo:RO_0002351op

has memberop # OPs

URI http://purl.obolibrary.org/obo/RO_0002351
Super-properties obo:BFO_0000051op

ObsoletePropertyop # OPs

URI http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty

designated byop # OPs

URI http://www.ontologyrepository.com/CommonCoreOntologies/designated_by

has familial relationship toop # OPs

URI http://www.ontologyrepository.com/CommonCoreOntologies/has_familial_relationship_to

prescribed byop # OPs

URI http://www.ontologyrepository.com/CommonCoreOntologies/prescribed_by
Inverse properties cco:prescribesop

prescribesop # OPs

URI http://www.ontologyrepository.com/CommonCoreOntologies/prescribes
Description

For all types T1 and T2, if T1 prescribes T2, then there is some instance of T1, t1, that serves as a rule or guide to some instance of T2, t2 (if T2 is a type of bfo:Occurrent) or that serves as a model for some instance of T2, t2 (if T2 is a type of bfo:Continuant).
Super-properties obo:IAO_0000136op

Functional Properties ↑

has measurement valuefp # FPs

URI http://purl.obolibrary.org/obo/IAO_0000004
Domain(s) obo:IAO_0000032c
Range(s) xsd:floatc xsd:doublec

has x coordinate valuefp # FPs

URI http://purl.obolibrary.org/obo/IAO_0000404
Domain(s) obo:IAO_0000400c
Range(s) xsd:floatc

has z coordinate valuefp # FPs

URI http://purl.obolibrary.org/obo/IAO_0000405
Domain(s) obo:IAO_0000400c
Range(s) xsd:floatc

has y coordinate valuefp # FPs

URI http://purl.obolibrary.org/obo/IAO_0000406
Domain(s) obo:IAO_0000400c
Range(s) xsd:floatc

Datatype Properties ↑

has specified valuedp # DPs

URI http://purl.obolibrary.org/obo/OBI_0001937
Domain(s) obo:OBI_0001933c
Range(s) owl:realc

revisiondp # DPs

URI http://usefulinc.com/ns/doap#revision
Is Defined By http://usefulinc.com/ns/doap

Annotation Properties ↑

defaultLanguageap # APs

URI http://protege.stanford.edu/plugins/owl/protege#defaultLanguage

BFO OWL specification labelap # APs

URI http://purl.obolibrary.org/obo/BFO_0000179
Super-properties rdfs:labelap

BFO CLIF specification labelap # APs

URI http://purl.obolibrary.org/obo/BFO_0000180
Super-properties rdfs:labelap

DUO_preferred_labelap # APs

URI http://purl.obolibrary.org/obo/DUO_0000041

editor preferred termap # APs

URI http://purl.obolibrary.org/obo/IAO_0000111
Is Defined By http://purl.obolibrary.org/obo/iao.owl

example of usageap # APs

URI http://purl.obolibrary.org/obo/IAO_0000112
Is Defined By http://purl.obolibrary.org/obo/iao.owl

in branchap # APs

URI http://purl.obolibrary.org/obo/IAO_0000113

has curation statusap # APs

URI http://purl.obolibrary.org/obo/IAO_0000114

textual definitionap # APs

URI http://purl.obolibrary.org/obo/IAO_0000115
Is Defined By http://purl.obolibrary.org/obo/iao.owl

editor noteap # APs

URI http://purl.obolibrary.org/obo/IAO_0000116
Is Defined By http://purl.obolibrary.org/obo/iao.owl

term editorap # APs

URI http://purl.obolibrary.org/obo/IAO_0000117
Is Defined By http://purl.obolibrary.org/obo/iao.owl

alternative termap # APs

URI http://purl.obolibrary.org/obo/IAO_0000118
Is Defined By http://purl.obolibrary.org/obo/iao.owl

definition sourceap # APs

URI http://purl.obolibrary.org/obo/IAO_0000119
Is Defined By http://purl.obolibrary.org/obo/iao.owl

has obsolescence reasonap # APs

URI http://purl.obolibrary.org/obo/IAO_0000231

curator noteap # APs

URI http://purl.obolibrary.org/obo/IAO_0000232
Is Defined By http://purl.obolibrary.org/obo/iao.owl

term tracker itemap # APs

URI http://purl.obolibrary.org/obo/IAO_0000233
Description

The 'tracker item' can associate a tracker with a specific ontology term.

ontology term requesterap # APs

URI http://purl.obolibrary.org/obo/IAO_0000234
Description

The 'term requester' can credit the person, organization or project who request the ontology term.

is denotator typeap # APs

URI http://purl.obolibrary.org/obo/IAO_0000411

imported fromap # APs

URI http://purl.obolibrary.org/obo/IAO_0000412
Is Defined By http://purl.obolibrary.org/obo/iao.owl

expand expression toap # APs

URI http://purl.obolibrary.org/obo/IAO_0000424

expand assertion toap # APs

URI http://purl.obolibrary.org/obo/IAO_0000425

first order logic expressionap # APs

URI http://purl.obolibrary.org/obo/IAO_0000426

antisymmetric propertyap # APs

URI http://purl.obolibrary.org/obo/IAO_0000427

OBO foundry unique labelap # APs

URI http://purl.obolibrary.org/obo/IAO_0000589

has ID digit countap # APs

URI http://purl.obolibrary.org/obo/IAO_0000596

has ID range allocated toap # APs

URI http://purl.obolibrary.org/obo/IAO_0000597

has ID policy forap # APs

URI http://purl.obolibrary.org/obo/IAO_0000598

has ID prefixap # APs

URI http://purl.obolibrary.org/obo/IAO_0000599

elucidationap # APs

URI http://purl.obolibrary.org/obo/IAO_0000600
Is Defined By http://purl.obolibrary.org/obo/iao.owl

has associated axiom(nl)ap # APs

URI http://purl.obolibrary.org/obo/IAO_0000601
Is Defined By http://purl.obolibrary.org/obo/iao.owl

has associated axiom(fol)ap # APs

URI http://purl.obolibrary.org/obo/IAO_0000602
Is Defined By http://purl.obolibrary.org/obo/iao.owl

is allocated id rangeap # APs

URI http://purl.obolibrary.org/obo/IAO_0000603
Description

Add as annotation triples in the granting ontology

retired from use as ofap # APs

URI http://purl.obolibrary.org/obo/IAO_0000604

has ontology root termap # APs

URI http://purl.obolibrary.org/obo/IAO_0000700

may be identical toap # APs

URI http://purl.obolibrary.org/obo/IAO_0006011
Description

Edges asserting this should be annotated with to record evidence supporting the assertion and its provenance.

scheduled for obsoletion on or afterap # APs

URI http://purl.obolibrary.org/obo/IAO_0006012
Range(s) xsd:dateTimec

has axiom labelap # APs

URI http://purl.obolibrary.org/obo/IAO_0010000
Is Defined By http://purl.obolibrary.org/obo/iao.owl

IUIap # APs

URI http://purl.obolibrary.org/obo/IAO_0020019
Description

An annotation to be applied to individuals only. Value is a GUID/UUID for use in a referent tracking system.

term replaced byap # APs

URI http://purl.obolibrary.org/obo/IAO_0100001
Description

Add as annotation triples in the granting ontology

term_mapping_to_UMLSap # APs

URI http://purl.obolibrary.org/obo/ICO_0000091
Super-properties rdfs:seeAlsoap

term_mapping_to_NCITap # APs

URI http://purl.obolibrary.org/obo/ICO_0000092
Super-properties rdfs:seeAlsoap

term_mapping_to_HL7v3ap # APs

URI http://purl.obolibrary.org/obo/ICO_0000093
Super-properties rdfs:seeAlsoap

RUBRICap # APs

URI http://purl.obolibrary.org/obo/ICO_0000321

ISA alternative termap # APs

URI http://purl.obolibrary.org/obo/OBI_0001847
Super-properties obo:IAO_0000118ap

NIAID GSCID-BRC alternative termap # APs

URI http://purl.obolibrary.org/obo/OBI_0001886
Super-properties obo:IAO_0000118ap

temporal interpretationap # APs

URI http://purl.obolibrary.org/obo/RO_0001900

Contributorap # APs

URI http://purl.org/dc/elements/1.1/contributor
Is Defined By http://purl.org/dc/elements/1.1/

coverageap # APs

URI http://purl.org/dc/elements/1.1/coverage

Creatorap # APs

URI http://purl.org/dc/elements/1.1/creator
Is Defined By http://purl.org/dc/elements/1.1/

Dateap # APs

URI http://purl.org/dc/elements/1.1/date
Is Defined By http://purl.org/dc/elements/1.1/

Descriptionap # APs

URI http://purl.org/dc/elements/1.1/description
Is Defined By http://purl.org/dc/elements/1.1/

Formatap # APs

URI http://purl.org/dc/elements/1.1/format
Is Defined By http://purl.org/dc/elements/1.1/

identifierap # APs

URI http://purl.org/dc/elements/1.1/identifier

languageap # APs

URI http://purl.org/dc/elements/1.1/language

licenseap # APs

URI http://purl.org/dc/elements/1.1/license

memberap # APs

URI http://purl.org/dc/elements/1.1/member

publisherap # APs

URI http://purl.org/dc/elements/1.1/publisher

relationap # APs

URI http://purl.org/dc/elements/1.1/relation

rightsap # APs

URI http://purl.org/dc/elements/1.1/rights

Sourceap # APs

URI http://purl.org/dc/elements/1.1/source
Is Defined By http://purl.org/dc/elements/1.1/

Subject and Keywordsap # APs

URI http://purl.org/dc/elements/1.1/subject
Is Defined By http://purl.org/dc/elements/1.1/

Titleap # APs

URI http://purl.org/dc/elements/1.1/title
Is Defined By http://purl.org/dc/elements/1.1/

typeap # APs

URI http://purl.org/dc/elements/1.1/type

licenseap # APs

URI http://purl.org/dc/terms/license

file-releaseap # APs

URI http://usefulinc.com/ns/doap#file-release

created_byap # APs

URI http://www.geneontology.org/formats/oboInOwl#created_by

creation_dateap # APs

URI http://www.geneontology.org/formats/oboInOwl#creation_date

database_cross_referenceap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasDbXref

hasDefinitionap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasDefinition

hasExactSynonymap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasExactSynonym

has_obo_namespaceap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasOBONamespace

idap # APs

URI http://www.geneontology.org/formats/oboInOwl#id

inSubsetap # APs

URI http://www.geneontology.org/formats/oboInOwl#inSubset

is_metadata_tagap # APs

URI http://www.geneontology.org/formats/oboInOwl#is_metadata_tag

shorthandap # APs

URI http://www.geneontology.org/formats/oboInOwl#shorthand

commentap # APs

URI http://www.w3.org/2000/01/rdf-schema#comment

isDefinedByap # APs

URI http://www.w3.org/2000/01/rdf-schema#isDefinedBy

labelap # APs

URI http://www.w3.org/2000/01/rdf-schema#label

seeAlsoap # APs

URI http://www.w3.org/2000/01/rdf-schema#seeAlso

versionInfoap # APs

URI http://www.w3.org/2002/07/owl#versionInfo

exactMatchap # APs

URI http://www.w3.org/2004/02/skos/core#exactMatch

homepageap # APs

URI http://xmlns.com/foaf/0.1/homepage

mboxap # APs

URI http://xmlns.com/foaf/0.1/mbox

pageap # APs

URI http://xmlns.com/foaf/0.1/page

Noneap # APs

URI rdfs:seeAlso

Named Individuals ↑

geographic locationni

Class(es)
owl:Class
rdfs:Class
URI http://purl.obolibrary.org/obo/GAZ_00000448

example to be eventually removedni

Class(es)
obo:IAO_0000078
URI http://purl.obolibrary.org/obo/IAO_0000002

failed exploratory termni

Class(es)
obo:IAO_0000225
owl:Thing
URI http://purl.obolibrary.org/obo/IAO_0000103

metadata completeni

Class(es)
obo:IAO_0000078
owl:Thing
URI http://purl.obolibrary.org/obo/IAO_0000120

organizational termni

Class(es)
obo:IAO_0000078
owl:Thing
URI http://purl.obolibrary.org/obo/IAO_0000121

ready for releaseni

Class(es)
obo:IAO_0000078
owl:Thing
URI http://purl.obolibrary.org/obo/IAO_0000122

metadata incompleteni

Class(es)
obo:IAO_0000078
owl:Thing
URI http://purl.obolibrary.org/obo/IAO_0000123

uncuratedni

Class(es)
obo:IAO_0000078
owl:Thing
URI http://purl.obolibrary.org/obo/IAO_0000124

pending final vettingni

Class(es)
obo:IAO_0000078
owl:Thing
URI http://purl.obolibrary.org/obo/IAO_0000125

obsolete_coreni

URI http://purl.obolibrary.org/obo/IAO_0000224

placeholder removedni

Class(es)
obo:IAO_0000225
owl:Thing
URI http://purl.obolibrary.org/obo/IAO_0000226

terms mergedni

Class(es)
obo:IAO_0000225
URI http://purl.obolibrary.org/obo/IAO_0000227

term importedni

Class(es)
obo:IAO_0000225
URI http://purl.obolibrary.org/obo/IAO_0000228

term splitni

Class(es)
obo:IAO_0000225
URI http://purl.obolibrary.org/obo/IAO_0000229

obsolete_otherni

URI http://purl.obolibrary.org/obo/IAO_0000230

universalni

Class(es)
obo:IAO_0000409
URI http://purl.obolibrary.org/obo/IAO_0000410

defined classni

Class(es)
obo:IAO_0000409
URI http://purl.obolibrary.org/obo/IAO_0000420

named class expressionni

Class(es)
obo:IAO_0000409
URI http://purl.obolibrary.org/obo/IAO_0000421

to be replaced with external ontology termni

Class(es)
obo:IAO_0000078
URI http://purl.obolibrary.org/obo/IAO_0000423

requires discussionni

Class(es)
obo:IAO_0000078
URI http://purl.obolibrary.org/obo/IAO_0000428

axiom holds for all timesni

URI http://purl.obolibrary.org/obo/RO_0001901

iao.owlni

URI http://purl.obolibrary.org/obo/iao.owl

obi.owlni

URI http://purl.obolibrary.org/obo/obi.owl

OBI Release 2017-02-22ni

Class(es)
doap:Version
owl:Thing
URI http://purl.obolibrary.org/obo/obi/2017-02-22/obi.owl
See Also http://purl.obolibrary.org/obo/obi/wiki/Releases/2017-02-22

2017-02-22ni

Class(es)
owl:Thing
URI http://purl.obolibrary.org/obo/obi/wiki/Releases/2017-02-22

doapni

Class(es)
owl:Thing
URI http://usefulinc.com/ns/doap

Namespaces ↑

default (:)
http://purl.obolibrary.org/obo/ico.owl
cco
http://www.ontologyrepository.com/CommonCoreOntologies/
cito
http://purl.org/spar/cito/
dc
http://purl.org/dc/elements/1.1/
doap
http://usefulinc.com/ns/doap#
foaf
http://xmlns.com/foaf/0.1/
ncicp
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#
obo
http://purl.obolibrary.org/obo/
oboInOwl
http://www.geneontology.org/formats/oboInOwl#
oboInOwl1
ttp://www.geneontology.org/formats/oboInOwl#
owl
http://www.w3.org/2002/07/owl#
protege
http://protege.stanford.edu/plugins/owl/protege#
prov
http://www.w3.org/ns/prov#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
rdfs2
rdfs:
sdo
https://schema.org/
sio
http://semanticscience.org/resource/
skos
http://www.w3.org/2004/02/skos/core#
subsets
http://purl.obolibrary.org/obo/ro/subsets#
swrla
http://swrl.stanford.edu/ontologies/3.3/swrla.owl#
terms
http://purl.org/dc/terms/
xsd
http://www.w3.org/2001/XMLSchema#

Legend

cClasses
opObject Properties
fpFunctional Properties
dpData Properties
dpAnnotation Properties
pProperties
niNamed Individuals