Informed Consent Ontology (ICO)

IRI:
http://purl.obolibrary.org/obo/ico.owl
Version IRI:
http://purl.obolibrary.org/obo/ico/releases/2025-03-15/ico.owl
Current version :
2025-03-15
Authors :
Alla Karnovsky
Asiyah Yu Lin
Christoph Brochhausen
Cooper Stansbury
Elizabeth Eisenhauer
Elizabeth Umberfield
Frank Manion
J. Neil Otte
Jie Zheng
Jonathan Vajda
Kathleen Ford
Marcy Harris
Yongqun "Oliver" He
Contributors :
Anna Maria Masci
Chris Stoeckert
Cui Tao
Helena Ellis
Jian Guan
Jihad Obeid
Jonathan Bona
Mathias Brochhausen
William Duncan
Other visualisation :
Ontology source - WebVowl

Abstract

Terms were identified from a sample of informed consent templates, and definitions were selected based on concordance between the defintion and the use of the term in the source informed consent template document. We preferentially selected defintioins from the NCI thesuarus.

Table of Content

  1. Introduction
  2. Classes
  3. Object Properties
  4. Data Properties
  5. Named Individuals
  6. Annotation Properties
  7. SWRL Rules
  8. Namespace Declarations

Introduction

The Informed Consent Ontology (ICO) is an ontology for the informed consent and informed consent process in the medical field.

Classes

abbreviation textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000605

has super-classes
textual entityc

abbreviations sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000606

has super-classes
document partc
has partop some abbreviation textual entityc

abstractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000315

has super-classes
document partc
is aboutop some documentc
has sub-classes
graphical abstractc

abused person rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000309

has super-classes
rolec

acknowledgements sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000324

has super-classes
document partc

act of abusec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000301

has super-classes
processc

act of anonymizingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000217

has super-classes
planned processc
has sub-classes
act of removing identifiable informationc

act of approvingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000257

This 'act of approving' is distinct from the mental act of approving.
has super-classes
social actc

act of archiving informed consentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000265

has super-classes
planned processc

act of authorizingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000046

has super-classes
social actc
has sub-classes
authorization for release of confidential health informationc

act of canceling a permissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000109

has super-classes
planned processc

act of communicatingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000269

A note: 'entity' rather than 'agent' is used in this definition in order to allow that software can communicate with other software. However, it should be noted that this definition of communication excludes broader meanings, such as unintentional sharing of information.
has super-classes
social actc
has sub-classes
act of disclosurec

act of communicating assentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000197

has super-classes
social actc

act of contact for future researchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000149

has super-classes
planned processc

act of data sharingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000228

has super-classes
planned processc

act of data usec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000421

has super-classes
planned processc
has sub-classes
act of using study participant datac

act of declining to provide consentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000158

has super-classes
planned processc

act of disclosurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000302

has super-classes
act of communicatingc

act of filling out formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000193

has super-classes
planned processc

act of genetic testingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000311

has super-classes
planned processc

act of informed consentingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000196

is equivalent to
act of permittingc and (part ofop some informed consent processc)
has super-classes
act of permittingc
has sub-classes
consenting not to have financial benefitc, informed verbal consentc

act of informingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000221

has super-classes
social actc

act of permittingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000195

has super-classes
deontic declarationc
has specified outputop some permission rolec
has sub-classes
act of informed consentingc

act of regulatory supervisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000300

has super-classes
planned processc

act of removing identifiable informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000218

has super-classes
act of anonymizingc

act of sellingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000423

has super-classes
planned processc

act of storingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000227

has super-classes
planned processc
has sub-classes
act of storing a specimenc, act of storing signed informed consent formc

act of storing a specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000060

has super-classes
act of storingc
has participantop some specimenc

act of storing signed informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000123

Note: there were previously some related classes that distinguished the format of the informed consent form (e.g. electronic vs. paper). These distinctions are collapsed here. If making this distinction is necessary, the outputs of an instance of this class may be distinguished in their formatting. For instance, storing in an electronic format would entail an instance of an act of storing signed informed consent form bearing an 'has output' relation to an instance of an informed consent form that is in an electronic format.
has super-classes
act of storingc

act of using study participant datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000116

has super-classes
act of data usec

act of waivingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000306

has super-classes
social actc

action specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000007

has super-classes
directive information entityc

actual duration of study subject participationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000089

has super-classes
temporal regionc

adding a material entity into a targetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000274

is equivalent to
achieves_planned_objectiveop some adding material objectivec
has super-classes
material combinationc
realizesop some material to be added rolec
realizesop some target of material addition rolec
has specified outputop some material entityc and (has roleop some material to be added rolec) and (located inop some material entityc and (has roleop some target of material addition rolec))

adding material objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000434

has super-classes
material combination objectivec

addition of molecular labelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600038

has super-classes
material processingc
has specified inputop some molecular labelc
has specified inputop some target of material additionc
has specified outputop some molecular-labeled materialc
achieves_planned_objectiveop some material transformation objectivec

additional results sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000702

has super-classes
results sectionc

adipose tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001013

has super-classes
tissuec

adipose tissue specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002530

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some adipose tissuec)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

adrenal glandc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002369

has super-classes
material anatomical entityc

adrenal gland specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002522

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some adrenal glandc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

adult consent processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000156

has super-classes
informed consent processc

adverse eventc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OAE_0000001

The OAE official website is: http://www.oae-ontology.org/.
has super-classes
bodily processc

agar stab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000981

is equivalent to
specimenc and (is specified output ofop some agar stab storagec and (has specified inputop some has roleop some specimen rolec))
has super-classes
specimen with known storage statec

agar stab storagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001003

need to specify that agar is one of input for this process
has super-classes
storagec
has specified inputop some cultured cell populationc
achieves_planned_objectiveop some material maintenance objectivec

age category researchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000034

Should be paired with the an ontology term representing this population (e.g., xxx).
has super-classes
investigationc

age group inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002555

has super-classes
inclusion criterionc
(has partop some minimum age value specificationc) and (has partop some maximum age value specificationc)

age of majority inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002423

has super-classes
inclusion criterionc

agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000220

is equivalent to
Homo sapiensc or organizationc
has super-classes
material entityc
has sub-classes
Homo sapiensc, assenterc, organizationc

aggregate of organizationsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000033

It is often convenient to group organizations together that otherwise might not even interact with one another.
is equivalent to
is-aggregate-ofop some organizationc
has super-classes
material entityc

albuminc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PR_000003918

has super-classes
proteinc

albumin-free serumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003652

is equivalent to
blood serum specimenc and (has partop only not (albuminc))
has super-classes
blood serum specimenc

algorithmc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000064

has super-classes
plan specificationc
has sub-classes
software interpreterc

alivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001421

has super-classes
viabilityc

allowed research scope in informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000016

has super-classes
directive information entityc

Amniotac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32524

has super-classes
Tetrapodac
has sub-classes
Mammaliac

amniotic fluidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000173

has super-classes
organism substancec

amniotic fluid specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002500

is equivalent to
bodily fluid specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some amniotic fluidc)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
bodily fluid specimenc

analysis subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000008

has super-classes
subset ontology modulec

anatomical clusterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000477

has super-classes
material entityc

ancestry researchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000033

has super-classes
investigationc

anonymized information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000113

Anonymized data is applicable particularly for secondary use of health data.
has super-classes
information content entityc

anterior nasal swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002784

is equivalent to
nasal swab specimenc and (is specified output ofop some collecting specimen with swabc) and (is specified output ofop some specimen collection processc and (has specified inputop some anterior nasal wallc))
has super-classes
nasal swab specimenc

anterior nasal wallc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_3000016

has super-classes
material anatomical entityc

aortac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000947

has super-classes
material anatomical entityc

aorta specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002542

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some aortac))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

approving an informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000004

has super-classes
planned processc

Archaeac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2157

has super-classes
organismc

archiving signed electronic informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000124

has super-classes
planned processc

archiving signed informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000120

has super-classes
planned processc
has sub-classes
archiving signed scanned paper informed consent formc

archiving signed scanned paper informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000125

has super-classes
archiving signed informed consent formc

areolac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002032

has super-classes
material anatomical entityc

areolar swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002603

is equivalent to
breast swab specimenc and (is specified output ofop some collecting specimen with swabc) and (is specified output ofop some specimen collection processc and (has specified inputop some areolac))
has super-classes
breast swab specimenc

arterial bloodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0013755

has super-classes
bloodc
has sub-classes
umbilical cord bloodc

arterial blood specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000013

is equivalent to
blood specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some arterial bloodc)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
blood specimenc
has sub-classes
umbilical cord blood specimenc

arteryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001637

has super-classes
material anatomical entityc
has sub-classes
coronary arteryc, tibial arteryc

arthropod meal of blood specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002691

has super-classes
blood specimenc
is specified output ofop some collecting specimen from organismc

aspiration specimen collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002785

has super-classes
specimen collection processc

assent directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000323

(1) We indend instances of 'assent directive' to be stated positively with repect to the act of permitting. A 'assent directive' may only allow for different actions, not forbid them. However, since 'assent directives' may simultaneously create new duties or obligations, we define 'designated consent condition' in order to help manage these nested deontic statements.
has super-classes
permission directivec

assenterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000204

is equivalent to
agentc and (agent inop some act of communicating assentc)
has super-classes
agentc

assenter rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000169

has super-classes
rolec

assigning a centrally registered identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000574

has super-classes
planned processc
has specified outputop some centrally registered identifier symbolc
has participantop some centrally registered identifier registryc

associating information with a centrally registered identifier in its registryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000575

has super-classes
planned processc
has specified inputop some information content entityc
has specified inputop some centrally registered identifier symbolc
has participantop some centrally registered identifier registryc

atrial appendage specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002543

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some atrium auricular regionc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

atrium auricular regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0006618

has super-classes
multi-tissue structurec

authenticationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020023

has super-classes
processc
processc and (realizesop some credential rolec) and (has participantop some data itemc) and (has participantop some inverse is aboutop some data itemc)

author contributions sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000323

has super-classes
document partc

author identificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000302

has super-classes
written namec
has sub-classes
legal namec

author information sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000607

has super-classes
document partc
has partop some author information textual entityc

author information textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000608

has super-classes
textual entityc

author listc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000321

has super-classes
document partc
has partop some author identificationc

author rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000442

has super-classes
rolec

author summary sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000609

has super-classes
document partc
has partop some author summary textual entityc

author summary textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000610

has super-classes
textual entityc

authorization for release of confidential health informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000074

has super-classes
act of authorizingc

availability sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000611

has super-classes
document partc
has partop some availability textual entityc

availability textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000612

has super-classes
textual entityc

Bacteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2

has super-classes
organismc

base ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000001

has super-classes
ontology modulec

Bilateriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33213

has super-classes
Metazoac
has sub-classes
Vertebrata <vertebrates>c

bilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001970

has super-classes
bodily fluidc

bile specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002501

is equivalent to
digestive system fluid or secretion specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some bilec)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
digestive system fluid or secretion specimenc

biobank organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000623

has super-classes
organizationc

biological sample collectingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000161

has super-classes
planned processc
has sub-classes
blood sample collectingc, tissue sample collectingc

biomedical researchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000037

has super-classes
investigationc
has sub-classes
disease category researchc, drug development researchc, genetic researchc

biopsyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002650

has super-classes
collecting specimen from organismc
has specified inputop some devicec
has specified inputop some material anatomical entityc
has specified outputop some pre-mortem specimenc
has sub-classes
bone marrow biopsyc

bloodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000178

has super-classes
bodily fluidc
has sub-classes
arterial bloodc, capillary bloodc, placental bloodc, venous bloodc

blood plasma specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100016

has super-classes
blood specimenc
processed specimenc
is specified output ofop some material component separationc and (has specified inputop some blood specimenc)
has sub-classes
blood serum specimenc, platelet-poor plasma specimenc

blood sample collectingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000163

has super-classes
biological sample collectingc

blood serum specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100017

has super-classes
blood plasma specimenc
is specified output ofop some (filtrationc or centrifugationc or dialysisc) and (has specified inputop some blood specimenc)
has sub-classes
albumin-free serumc

blood specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000655

is equivalent to
bodily fluid specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some bloodc)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
bodily fluid specimenc
has sub-classes
arterial blood specimenc, arthropod meal of blood specimenc, blood plasma specimenc, blood specimen in vacutainerc, blood specimen on blood spot cardc, blood specimen on filter paperc, capillary blood specimenc, peripheral blood mononuclear cell specimenc, placental blood specimenc, venous blood specimenc

blood specimen in vacutainerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003054

has super-classes
blood specimenc
(is specified output ofop some specimen collection processc) and (derives fromop some bloodc)
is specified output ofop some collecting specimen from organismc

blood specimen on blood spot cardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000039

A specimen that located in a blood spot card via blood spotting process.
has super-classes
blood specimenc

blood specimen on filter paperc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003055

has super-classes
blood specimenc
(is specified output ofop some specimen collection processc) and (derives fromop some bloodc)
is specified output ofop some collecting specimen from organismc

blood transfusion exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002429

has super-classes
exclusion criterionc

BMI range inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002428

has super-classes
inclusion criterionc

bodily fluidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0006314

has super-classes
organism substancec
has sub-classes
bilec, bloodc, cerebrospinal fluidc, cervical mucusc, lymphc, milkc, pericardial fluidc, peritoneal fluidc, pleural fluidc, sweatc, synovial fluidc

bodily fluid specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000009

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some bodily fluidc)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc
has sub-classes
amniotic fluid specimenc, blood specimenc, cerebrospinal fluid specimenc, cervical mucus specimenc, digestive system fluid or secretion specimenc, lymph specimenc, milk specimenc, pericardial fluid specimenc, peritoneal fluid specimenc, pleural fluid specimenc, saliva specimenc, semen specimenc, sputum specimenc, sweat specimenc, synovial fluid specimenc, urine specimenc

bodily processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000060

has super-classes
processc
has sub-classes
adverse eventc

bone marrowc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002371

has super-classes
tissuec

bone marrow biopsyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002662

has super-classes
biopsyc
has specified inputop some bone marrowc

bone marrow specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002512

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some bone marrowc)) and (is specified output ofop some bone marrow biopsyc)
has super-classes
specimen from organismc

brainc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000955

has super-classes
material anatomical entityc

brain specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002516

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some brainc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc
has sub-classes
cerebellum specimenc, cerebral cortex specimenc

breastc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000310

has super-classes
material anatomical entityc

breast specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002523

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some breastc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc
has sub-classes
breast swab specimenc

breast swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002604

is equivalent to
breast specimenc and (is specified output ofop some collecting specimen with swabc) and (is specified output ofop some specimen collection processc and (has specified inputop some breastc))
has super-classes
breast specimenc
swab specimenc
has sub-classes
areolar swab specimenc

bridge ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000004

has super-classes
ontology modulec
has sub-classes
taxonomic bridge ontology modulec

broad consent processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000179

has super-classes
planned processc

broad consent rulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000238

has super-classes
rulec

bronchial alveolar lavagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100067

is equivalent to
lavage fluid specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some lungc)) and (is specified output ofop some lavagec)
has super-classes
lavage fluid specimenc

cancer research investigationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000051

has super-classes
investigationc

candidate eligible for study rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000147

has super-classes
rolec

candidate ineligible for study rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000148

has super-classes
rolec

capability to consentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000201

has super-classes
dispositionc
characteristic ofop some agentc
has sub-classes
competency to consentc

capillary bloodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0013757

has super-classes
bloodc

capillary blood specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000015

is equivalent to
blood specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some capillary bloodc)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
blood specimenc

captionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000304

has super-classes
textual entityc
is aboutop some figurec

cartesian spatial coordinate datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000400

has super-classes
data itemc
denotesop some zero-dimensional spatial regionc
has coordinate unit labelop exactly 1
has sub-classes
one dimensional cartesian spatial coordinate datumc, three dimensional cartesian spatial coordinate datumc, two dimensional cartesian spatial coordinate datumc
is in domain of
has coordinate unit labelop, has x coordinate valuedp, has y coordinate valuedp, has z coordinate valuedp

case report sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000613

has super-classes
document partc
has partop some case report textual entityc

case report textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000614

has super-classes
textual entityc

cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000000

has super-classes
material entityc
has sub-classes
erythrocytec, experimentally modified cell in vitroc, leukocytec, mononuclear cellc, reticulocytec

cell freezing mediumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001912

has super-classes
processed materialc

cell specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001468

is equivalent to
specimen from organismc and (has partop some cellc)
has super-classes
specimen from organismc
has sub-classes
erythrocyte specimenc, leukocyte specimenc, lymph node cell specimenc, reticulocyte specimenc, single cell specimenc, splenocyte specimenc

centrally registered identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000578

has super-classes
identifierc
has partop some centrally registered identifier symbolc
has partop some denotesop some centrally registered identifier registryc

centrally registered identifier registryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000579

has super-classes
data setc

centrally registered identifier symbolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000577

has super-classes
symbolc
part ofop some centrally registered identifierc

centrifugationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302886

has super-classes
material component separationc
achieves_planned_objectiveop some separation into different composition objectivec
has participantop some centrifugec

centrifugec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0400106

has super-classes
measurement devicec
material separation devicec
has partop some has functionop some contain functionc
has functionop some measure functionc
has functionop some material separation functionc and (realized inop only centrifugationc)

cerebellumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002037

has super-classes
multi-tissue structurec

cerebellum specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002538

is equivalent to
brain specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some cerebellumc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
brain specimenc

cerebral cortexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000956

has super-classes
material anatomical entityc

cerebral cortex specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002536

is equivalent to
brain specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some cerebral cortexc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
brain specimenc

cerebrospinal fluidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001359

has super-classes
bodily fluidc

cerebrospinal fluid specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002502

is equivalent to
bodily fluid specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some cerebrospinal fluidc)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
bodily fluid specimenc

cervical mucusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000316

has super-classes
bodily fluidc

cervical mucus specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000002

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some cervical mucusc)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
bodily fluid specimenc

cheekc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001567

has super-classes
material anatomical entityc

cheek swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002605

is equivalent to
oral swab specimenc and (is specified output ofop some collecting specimen with swabc) and (is specified output ofop some specimen collection processc and (has specified inputop some cheekc))
has super-classes
oral swab specimenc

chemotherapy treatment exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002424

has super-classes
exclusion criterionc

chemotherapy treatment within the recent past exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002426

has super-classes
exclusion criterionc

chorionic villusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0007106

has super-classes
material anatomical entityc

chorionic villus specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000010

is equivalent to
placenta specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some chorionic villusc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
placenta specimenc

citationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000301

has super-classes
textual entityc
is aboutop some documentc

clinical care usec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000043

Clinical Care is defined as Health care or services provided at home, in a healthcare facility or hospital. Data may be used for clinical decision making.
has super-classes
data use modifierc

clinical findingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000014

has super-classes
data itemc
has sub-classes
laboratory findingc

clinical laboratory testc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000056

has super-classes
planned processc

clinical trialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000065

has super-classes
investigationc

clinical trial titlec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000066

has super-classes
investigation titlec
denotesop some clinical trialc

clinically relevant exposure inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002455

has super-classes
inclusion criterionc

clinically relevant lifestyle inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002454

has super-classes
inclusion criterionc

cloacac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000162

has super-classes
material anatomical entityc

cloacal specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000909

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some cloacac)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

cognitive impairmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000262

Date :
Imported and adapted 8.22.2018
has super-classes
dispositionc

collaboration requiredc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000020

This could be coupled with a string describing the primary study investigator(s).
has super-classes
data use modifierc

collecting specimen from organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600005

has super-classes
specimen collection processc
has specified inputop some organismc
has specified outputop some specimenc
achieves_planned_objectiveop some specimen collection objectivec
has sub-classes
biopsyc, lavagec

collecting specimen with swabc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002600

has super-classes
specimen collection processc

collection of humansc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000023

An object aggregate all of whose components are human beings.
is equivalent to
is-aggregate-ofop some Homo sapiensc
has super-classes
collection of organismsc

collection of organismsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000022

Any arbitrary collection of organisms. They need not be of the same taxonomic class.
is equivalent to
is-aggregate-ofop some organismc
has super-classes
material entityc
has sub-classes
collection of humansc

colonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001155

has super-classes
material anatomical entityc

colon specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002533

is equivalent to
digestive tract specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some colonc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
digestive tract specimenc

comment on investigationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001898

is equivalent to
textual entityc and (is aboutop some investigationc or (part ofop some investigationc) or (participates inop some investigationc))
has super-classes
textual entityc
has sub-classes
investigation titlec

committee member rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OOSTT_00000117

Date :
Imported 8.30.2018.
has super-classes
rolec

competency to consentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000202

has super-classes
capability to consentc

compiling softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000524

It's compiling "software" (scare quotes) and not "source code" because you can compile Java bytecode to machine code, and Java bytecode is not technically "source code". Compiling source code would be a subclass of this class (as would compiling Java bytecode, etc.).
has super-classes
software developmentc
(has specified inputop some softwarec or source code modulec) and (has specified outputop some softwarec)

complete informed consent form indicating consentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000214

has super-classes
informed consent formc

completely filled informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000023

has super-classes
informed consent formc

conclusion based on datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001909

has super-classes
information content entityc
is_supported_by_dataop some data itemc
is specified output ofop some drawing a conclusion based on datac
is in domain of
is_supported_by_dataop

conclusion sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000615

has super-classes
document partc
has partop some conclusion textual entityc

conclusion textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000144

has super-classes
textual entityc

conditional informed consent rulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000237

has super-classes
rulec

conditional obligation directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000249

has super-classes
conditional specificationc

conditional restriction directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000247

has super-classes
conditional specificationc

conditional specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000001

has super-classes
directive information entityc
has sub-classes
conditional obligation directivec, conditional restriction directivec, rulec, time triggerc

confidentiality directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000268

has super-classes
directive information entityc

conflict of interest sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000616

has super-classes
document partc
has partop some conflict of interest textual entityc

conflict of interest textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000617

has super-classes
textual entityc

consent directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000322

(1) We indend instances of 'consent directive' to be stated positively with repect to the act of permitting. A 'consent directive' may only allow for different actions, not forbid them. However, since 'consent directives' may simultaneously create new duties or obligations, we define 'designated consent condition' in order to help manage these nested deontic statements. (2) Another, less formal definition: 'A statement that guides action that is made allowable by a consenting entity, where that action is otherwise impermissible.' (3) The definition from HL7: "The legal record of a healthcare consumer's agreement with a party responsible for enforcing the consumer’s choices, which permits or denies identified actors or roles to perform actions affecting the consumer within a given context for specific purposes and periods of time." https://www.hl7.org/fhir/consent.html
has super-classes
permission directivec

consent language directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000258

has super-classes
directive information entityc

consent power rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000223

has super-classes
deontic power rolec

consent sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000618

has super-classes
document partc
has partop some consent textual entityc

consent textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000619

has super-classes
textual entityc

consenterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000205

is equivalent to
Homo sapiensc and (bearer ofop some consent power rolec and (realized inop some act of informed consentingc))
has super-classes
Homo sapiensc

consenter rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000086

has super-classes
rolec

consenting in short formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000160

has super-classes
informed consent processc

consenting not to have financial benefitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000177

has super-classes
act of informed consentingc

consenting to not to be informed about incidental findingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000178

has super-classes
planned processc

consequent directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000243

has super-classes
directive information entityc

contact directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000189

has super-classes
directive information entityc

contact method descriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000266

has super-classes
descriptive information content entityc

contact method directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000280

has super-classes
directive information entityc

contact person for questions about researchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000069

has super-classes
Homo sapiensc

contact person for questions about research subject rightsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000070

has super-classes
Homo sapiensc

contact person in informed consent processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000072

has super-classes
Homo sapiensc

contact person rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000230

The subclasses of 'contact person role' distinguish two types: a contact person who has been designated by an organization for others (primarily patients and human research subjects in clinical settings) to contact, and a contact person whom an agent has specified for an organization to contact in the event that the organization needs to contact the patient. Examples of the latter include 'emergency contact' persons, who are frequently specified in a form.
has super-classes
rolec
has sub-classes
human subject-specified contact person rolec, organization-specified contact rolec

contain functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000370

has super-classes
functionc

continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000002

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
entityc
has sub-classes
generically dependent continuantc, independent continuantc, specifically dependent continuantc
is in domain of
participates inop
is in range of
has participantop
is disjoint with
occurrentc

continuant fiat boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000140

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
immaterial entityc
has sub-classes
one-dimensional continuant fiat boundaryc, two-dimensional continuant fiat boundaryc, zero-dimensional continuant fiat boundaryc
is disjoint with
spatial regionc

contour plotc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000057

has super-classes
graphc

copyright sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000330

has super-classes
document partc

coronary arteryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001621

has super-classes
arteryc

coronary artery specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002540

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some coronary arteryc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

cortex of kidneyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001225

has super-classes
material anatomical entityc

cortex of kidney specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002531

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some cortex of kidneyc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000032

is equivalent to
data itemc and (is specified output ofop some countingc)
has super-classes
measurement datumc

countingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000033

is equivalent to
planned processc and (has specified outputop some countc)
has super-classes
planned processc

country of residence inclusion criteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002562

has super-classes
inclusion criterionc

covered entity rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000424

has super-classes
rolec

credential rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020024

is equivalent to
rolec and (realized inop some authenticationc) and (characteristic ofop some bearer ofop some concretizesop some identity documentc)
has super-classes
rolec

culture mediumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000079

has super-classes
processed materialc

cultured cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000010

has super-classes
experimentally modified cell in vitroc
(is specified output ofop some establishing cell culturec) or (derives fromop some is specified output ofop some establishing cell culturec)

cultured cell populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100060

The extent of a 'cultured cell population' is restricted only in that all cell members must share a propagation history (ie be derived through a common lineage of passages from an initial culture). In being defined in this way, this class can be used to refer to the populations that researchers actually use in the practice of science - ie are the inputs to culturing, experimentation, and sharing. The cells in such populations will be a relatively uniform population as they have experienced similar selective pressures due to their continuous co-propagation. And this population will also have a single passage number, again owing to their common passaging history. Cultured cell populations represent only a collection of cells (ie do not include media, culture dishes, etc), and include populations of cultured unicellular organisms or cultured multicellular organism cells. They can exist under active culture, stored in a quiescent state for future use, or applied experimentally.
has super-classes
processed materialc
is specified output ofop some maintaining cell culturec
has grainop some cultured cellc
has grainop only cultured cellc

curation status specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000078

is equivalent to
{ example to be eventually removed , metadata complete , organizational term , ready for release , metadata incomplete , uncurated , pending final vetting , to be replaced with external ontology term , requires discussion }
has super-classes
data about an ontology partc
has members
example to be eventually removedni, requires discussionni, to be replaced with external ontology termni

curation subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000007

has super-classes
subset ontology modulec

cytoplasmic RNA extractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000876

is equivalent to
RNA extractc and (is specified output ofop some cytoplasmic RNA extractionc)
has super-classes
RNA extractc

cytoplasmic RNA extractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000859

has super-classes
RNA extractionc

data about an ontology partc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000102

has super-classes
data itemc
has sub-classes
curation status specificationc, denotator typec, obsolescence reason specificationc, ontology modulec

data administration functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000112

has super-classes
functionc

data format specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000098

has super-classes
directive information entityc
has sub-classes
videoc

data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000027

has super-classes
information content entityc
has sub-classes
cartesian spatial coordinate datumc, clinical findingc, data about an ontology partc, data setc, data use modifierc, data use permissionc, date specification in informed consent formc, genetic characteristics informationc, informed consent identification codec, measurement datumc, setting datumc
is in range of
is_supported_by_dataop

data item extraction from journal articlec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000443

has super-classes
planned processc
has specified inputop some journal articlec
has specified outputop some data itemc

data recipient rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000425

has super-classes
rolec

data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000100

has super-classes
data itemc
has sub-classes
centrally registered identifier registryc, time sampled measurement data setc

data sharing directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000293

has super-classes
directive information entityc

data transformationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200000

has super-classes
planned processc

data use modifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000017

has super-classes
data itemc
has sub-classes
clinical care usec, collaboration requiredc, ethics approval requiredc, genetic studies onlyc, geographical restrictionc, institution specific restrictionc, no general methods researchc, not for profit, non commercial use onlyc, population origins or ancestry research prohibitedc, project specific restrictionc, publication moratoriumc, publication requiredc, research specific restrictionsc, return to database or resourcec, time limit on usec, user specific restrictionc

data use permissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000001

has super-classes
data itemc
has sub-classes
general research usec, no restrictionc, population origins or ancestry research onlyc

database extract, transform, and load processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000650

is defined by
https://github.com/information-artifact-ontology/IAO
has super-classes
planned processc
has specified inputop some information content entityc
has specified outputop some information content entityc

dataset creatingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000796

is equivalent to
planned processc and (has specified outputop some data setc)
has super-classes
planned processc

date specification in informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000035

has super-classes
data itemc

datum labelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000009

has super-classes
information content entityc
has sub-classes
measurement unit labelc

deadc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001422

has super-classes
viabilityc

defined population inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002460

has super-classes
inclusion criterionc

dendrogramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000183

has super-classes
graphc

denotator typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000409

is equivalent to
{ universal , defined class , named class expression }
has super-classes
data about an ontology partc
has members
defined classni, named class expressionni, universalni

density plotc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000079

has super-classes
graphc

deontic declarationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021009

is equivalent to
(legally revokesop some deontic rolec) or (has specified outputop some deontic rolec)
has super-classes
social actc
has sub-classes
act of permittingc, deontic document actc
is in domain of
legally revokesop

deontic declaration performer rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021022

has super-classes
rolec

deontic document actc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021001

is equivalent to
deontic declarationc and (has specified inputop some document act input documentc) and (has specified outputop some documentc)
has super-classes
deontic declarationc

deontic power rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000215

has super-classes
deontic rolec
has sub-classes
consent power rolec

deontic power role directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000240

has super-classes
directive information entityc

deontic rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021008

has super-classes
rolec
has sub-classes
deontic power rolec, permission rolec
is in range of
legally revokesop

deoxyribonucleic acidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_16991

has super-classes
nucleic acidc

departmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000630

has super-classes
organizationc

description of alternativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000259

has super-classes
descriptive information content entityc

description of breach of confidentialityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000281

has super-classes
descriptive information content entityc

description of broad consentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000192

has super-classes
descriptive information content entityc

description of coercionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000260

has super-classes
descriptive information content entityc

description of collected biospecimensc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000276

has super-classes
descriptive information content entityc

description of collected informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000277

has super-classes
descriptive information content entityc

description of conditional compensationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000274

has super-classes
descriptive information content entityc

description of consequences of voluntarily withdrawalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000296

has super-classes
descriptive information content entityc

description of discomfortc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000275

has super-classes
descriptive information content entityc

description of expected study participation durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000272

has super-classes
descriptive information content entityc

description of financial riskc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000283

has super-classes
descriptive information content entityc

description of future biospecimen usec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000278

has super-classes
description of future usec

description of future data usec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000304

has super-classes
description of future usec

description of future usec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000305

has super-classes
descriptive information content entityc
has sub-classes
description of future biospecimen usec, description of future data usec

description of incentivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000291

has super-classes
descriptive information content entityc

description of legal responsibilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000282

has super-classes
descriptive information content entityc

description of medical procedurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000251

has super-classes
descriptive information content entityc

description of participation benefitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000190

has super-classes
descriptive information content entityc

description of participation riskc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000008

has super-classes
descriptive information content entityc

description of procedure for obtaining further informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000279

has super-classes
descriptive information content entityc

description of reputational riskc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000284

has super-classes
descriptive information content entityc

description of research procedurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000303

has super-classes
descriptive information content entityc

description of voluntary participationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000253

has super-classes
descriptive information content entityc

description of waiverc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000308

has super-classes
descriptive information content entityc

descriptive data sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000701

has super-classes
document partc

descriptive information content entityc back to ToC or Class ToC

IRI: http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity

Date :
Retrieved from Common Core Ontologies 7/17/2018
has super-classes
information content entityc
has sub-classes
contact method descriptionc, description of alternativec, description of breach of confidentialityc, description of broad consentc, description of coercionc, description of collected biospecimensc, description of collected informationc, description of conditional compensationc, description of consequences of voluntarily withdrawalc, description of discomfortc, description of expected study participation durationc, description of financial riskc, description of future usec, description of incentivec, description of legal responsibilityc, description of medical procedurec, description of participation benefitc, description of participation riskc, description of procedure for obtaining further informationc, description of reputational riskc, description of research procedurec, description of voluntary participationc, description of waiverc

designated actionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000324

(1) It is critical that these classes not be mistaken for processes themselves. If you intend to build logical axioms within the BFO framework it will be necessary to create realtions between instances of 'designated actions' and 'processes.' We leave this mapping undone in order to accomodate various non-BFO process value sets. (2) We believe it is important to separate 'processes' from their inputs, outputs, or participants in action designatation. For example: instead of a 'designated process of blood extraction' we would advocate for creation of a designated action such as 'designated process of extraction' so that this class may also be used with different objects, like teeth. This is of course, application dependent. This is only a guide. (3) It is our intent that all instances of 'designated actions' that are related to instances of 'permission directive' be processes or events in which deontic roles of some kind may be realized. Stated another way, a 'designated action' should be an action that is not allowable unless a process makes it so: for example, a 'process of informed consent' with a subprocess 'act of permitting.'
has super-classes
Designative Information Content Entityc
has sub-classes
designated procedurec, designated process of accessc, designated process of administrationc, designated process of analysisc, designated process of collectionc, designated process of contactc, designated process of destructionc, designated process of disclosurec, designated process of duplicationc, designated process of modificationc, designated process of retentionc, designated process of sharingc, designated process of studyc, designated process of surveillancec, designated process of transferc, designated process of treatmentc, designated process of unspecified usec

designated actorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000325

(1) In the general sense, 'designated actors' should designate entities which perform, or participate in an action. While the notion of 'agency' is important for some entiites, at some times, involved in processes of informed consent, we do not define actors in terms of their agency. (2) Within the greater BFO, D-acts, and ICO frameworks, we believe that a 'designated actor' has some capability to bear deontic roles.
has super-classes
Designative Information Content Entityc
has sub-classes
designated affiliated actorc, designated assenting actorc, designated authorized representativec, designated consenting actorc, designated corporationc, designated information system actorc, designated institutionc, designated organizationc, designated permitted actorc, designated permitting actorc, designated principal investigatorc, designated teamc, designated unspecified actorc

designated administrative purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000347

(1) actions undertaken support system processing
has super-classes
permission purpose directivec

designated affiliated actorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000379

(1) actor with a designated affiliation to an organization/institution. (2) intended for single individuals rather than groups, but as a way to relate groups and actors performing on the group's behalf.
has super-classes
designated actorc

designated age category research purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000412

has super-classes
designated biomedical research purposec

designated ancestry research purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000409

has super-classes
designated research purposec

designated assenting actorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000399

(1) not to be confused with 'designated consenting actor'. (2) this definition is currently the same as the definition for 'designated consenting actor'. We need to remedy this without appealing to U.S. specific legislative definitions.
has super-classes
designated actorc

designated authorized representativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000401

(1) legally authorized representative (LAR): has the ability to act on behalf of another person (under the rule of law). (2) not sure if this should be under the 'designated permitting actor'. (3) surrogates are included here.
has super-classes
designated actorc

designated biobank organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000386

has super-classes
designated organizationc

designated biomedical research purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000345

has super-classes
designated research purposec
has sub-classes
designated age category research purposec, designated disease research purposec, designated drug research purposec, designated gender research purposec, designated genetic research purposec

designated biospecimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000375

(1) this should be mapped to robust specimen heirarchies such as: http://purl.obolibrary.org/obo/OBI_0100051
has super-classes
designated objectc
has sub-classes
designated residual tissuec

designated commercial purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000351

has super-classes
permission purpose directivec
is disjoint with
designated non-commercial purposec

designated consenting actorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000400

(1) Not to be confused with 'designed assenting actor' (2) By 'permitting' we mean 'making the otherwise impermissable action permissable' or 'making allowable.'
has super-classes
designated actorc

designated control material research purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000407

has super-classes
designated research purposec

designated corporationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000380

has super-classes
designated actorc

designated datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000367

(1) This is really saying that this is information that designates other information content entities (in BFO-speak).
has super-classes
designated objectc
has sub-classes
designated genetic datac, designated health informationc, designated identifiable informationc, designated image datac, designated video datac, designated waveform datac

designated diagnostic purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000348

(1) related to, but perhaps not limited to the following classes in OGMS: (2) diagnosis (http://purl.obolibrary.org/obo/OGMS_0000073) (3) diagnostic process (http://purl.obolibrary.org/obo/OGMS_0000104)
has super-classes
permission purpose directivec

designated disease research purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000411

has super-classes
designated biomedical research purposec

designated drug research purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000410

has super-classes
designated biomedical research purposec

designated educational organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000385

has super-classes
designated organizationc

designated educational purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000349

has super-classes
permission purpose directivec

designated evaluation purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000350

has super-classes
permission purpose directivec

designated for-profit organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000387

has super-classes
designated organizationc

designated funding organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000388

has super-classes
designated organizationc

designated gender research purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000413

has super-classes
designated biomedical research purposec

designated genetic datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000369

has super-classes
designated datac

designated genetic research purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000346

has super-classes
designated biomedical research purposec

designated government organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000389

has super-classes
designated organizationc

designated health informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000370

has super-classes
designated datac

designated health services research purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000405

has super-classes
designated research purposec

designated healthcare operation purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000352

(1) quality and safety purposes
has super-classes
permission purpose directivec

designated healthcare organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000390

has super-classes
designated organizationc

designated human objectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000374

(1) for when the permitting party is the target of the 'designated action' (2) you may operate on my leg (3) this includes 'study participant' as the target of an action. May also include patient.
has super-classes
designated objectc

designated identifiable informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000371

(1) How broad is this notion of 'entity' here? (2) NOTE: this not nested under 'designated health information' because information does not need to be health information to be identifiable. (3) HIPAA Identifiers (4) Includes fully and partially identifiable information.
has super-classes
designated datac

designated image datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000372

has super-classes
designated datac

designated information system actorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000383

has super-classes
designated actorc

designated institutionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000381

(1) established organization (2) an entity that has independent financial, legal, interests or identity.
has super-classes
designated actorc

designated media organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000392

has super-classes
designated organizationc

designated methods development purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000406

has super-classes
designated research purposec

designated non-commercial purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000353

has super-classes
permission purpose directivec
is disjoint with
designated commercial purposec

designated non-profit organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000393

has super-classes
designated organizationc

designated objectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000326

(1) In English, this is typically the 'object' of the clause where the 'designated action' is the verb. We may also refer to this as the 'designated target' of the action. However, we choose 'object' to more clearly separate the objects of the actions from the ends.
has super-classes
Designative Information Content Entityc
has sub-classes
designated biospecimenc, designated datac, designated human objectc, designated pharmaceutical objectc, designated unspecified objectc

designated organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000384

(1) where does surgical team fit in? (2) how do we define aggregates of people? (3) possible mapping to (OBI: organization) http://purl.obolibrary.org/obo/OBI_0000245
has super-classes
designated actorc
has sub-classes
designated biobank organizationc, designated educational organizationc, designated for-profit organizationc, designated funding organizationc, designated government organizationc, designated healthcare organizationc, designated media organizationc, designated non-profit organizationc, designated public health organizationc, designated regulatory organizationc, designated research organizationc, designated unspecified organizationc

designated permitted actorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000378

(1) This designation points towards deontic roles and social processes. (2) This can be read as: 'the actor TO BE permitted.' It is not intended to create a permission the same way the creation of an ICO:permission role might. However, we leave this somewhat open to implementation interpretation.
has super-classes
designated actorc

designated permitting actorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000398

(1) This designation points towards deontic roles and social processes.
has super-classes
designated actorc

designated pharmaceutical objectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000415

has super-classes
designated objectc

designated populations research purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000408

has super-classes
designated research purposec

designated principal investigatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000382

has super-classes
designated actorc

designated procedurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000331

(1) It is our intent for this term to serve as a blanket class for all types of clinical procedures. If an application demands specificity of procedures, for example administration of anesthetic, this would be a good parent class for such a list or subtree of procedures.
has super-classes
designated actionc

designated process of accessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000329

(1) Access is a complex issue. We intend this class to cover instances whereby an entity may gain the ability to act upon an object whereby they previously were not able to do so. Examples may include: accessing PHI in a database, linking sensitive information to a biospecimen repository, ect.
has super-classes
designated actionc

designated process of administrationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000414

(1) This class is intended for actions such as 'drug administration.'
has super-classes
designated actionc

designated process of analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000330

has super-classes
designated actionc

designated process of collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000332

(1) It is our intent that this class includes instances of collection of material and of information. We note that the actual processes of 'retention' (read: 'storage') and 'collection' may be ambigously differentiated. (2) We intend this class to primarily cover de novo collection.
has super-classes
designated actionc

designated process of contactc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000338

(1) This includes instances of recontact.
has super-classes
designated actionc

designated process of destructionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000333

has super-classes
designated actionc

designated process of disclosurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000334

has super-classes
designated actionc

designated process of duplicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000335

(1) We intend this designation to include processes of 'copying.'
has super-classes
designated actionc

designated process of modificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000337

has super-classes
designated actionc

designated process of retentionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000339

(1) these may often be accompanied by a 'designated temporal conditon'. (2) if these are do not follow (1), they may be more approproately labeled 'stases' instead of 'process.' (3) we believe this includes storage, should it be re-labeled 'storage?'
has super-classes
designated actionc

designated process of sharingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000340

(1) this, along with 'transfer' need to be properly fleshed out. Perhaps the difference is 'ownership.' When you share, you may retain the right to ownership, but when you transfer, you yield this right.... (2) does sharing including publishing PHI? De-anonymizing? (3) what about 'release?'
has super-classes
designated actionc

designated process of studyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000341

(1) require link to a 'Descriptive Information Content Entity' like: 'STUDY DETAILS?' (2) STUDY PRTICIPATION
has super-classes
designated actionc

designated process of surveillancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000342

(1) our usage more closely resembles the use in NCIT.
has super-classes
designated actionc

designated process of transferc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000343

(1) is collection a tranfer of ownership?
has super-classes
designated actionc

designated process of treatmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000419

(1) consent to treat
has super-classes
designated actionc

designated process of unspecified usec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000336

(1) this is a 'catch-all' bucket to define those 'designated action'(s) that are not explicit. (2) does this require a 'designated purpose' specification? (this is boarderline rule enforcement that may be appropriate at implmentation, but not here).
has super-classes
designated actionc

designated public health organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000394

(1) groups that may have the ability to override specific norms?
has super-classes
designated organizationc

designated recruitment purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000416

has super-classes
permission purpose directivec

designated regulatory organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000391

has super-classes
designated organizationc

designated research organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000395

has super-classes
designated organizationc

designated research purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000344

(1) This is a pointer to ADAM Matrix. (2) covers future
has super-classes
permission purpose directivec
has sub-classes
designated ancestry research purposec, designated biomedical research purposec, designated control material research purposec, designated health services research purposec, designated methods development purposec, designated populations research purposec

designated residual tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000376

has super-classes
designated biospecimenc

designated return of results purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000417

(1) This is intended to cover communication from a healthcare organization to a patient or study participant regarding their health.
has super-classes
permission purpose directivec

designated teamc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000396

(1) this is useful in defining things like 'research team' or 'clinical team.'
has super-classes
designated actorc

designated therapeutic purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000354

has super-classes
permission purpose directivec

designated unspecified actorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000403

has super-classes
designated actorc

designated unspecified objectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000377

has super-classes
designated objectc

designated unspecified organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000397

has super-classes
designated organizationc

designated unspecified purposec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000355

has super-classes
permission purpose directivec

designated video datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000373

has super-classes
designated datac

designated waveform datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000368

has super-classes
designated datac

Designative Information Content Entityc back to ToC or Class ToC

IRI: http://www.ontologyrepository.com/CommonCoreOntologies/DesignativeInformationContentEntity

[Merriam-Webster] (1) Definition of 'designate as' : to choose (someone or something) for (a particular role or purpose) (2) Definition of 'designate': (Entry 2 of 2) <transitive verb> 1: to indicate and set apart for a specific purpose, office, or duty (3) Definition of 'denote': <transitive verb> 1: to serve as an indication of : BETOKEN 2: to serve as an arbitrary mark for red flares denoting danger, 3: to make known : ANNOUNCE (4) Also 'demarcate' or 'delimit'
has super-classes
information content entityc
has sub-classes
designated actionc, designated actorc, designated objectc

designing an informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000002

has super-classes
planned processc

devicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000968

has super-classes
processed materialc
is specified output ofop some material processingc
has functionop some functionc
has sub-classes
material separation devicec, measurement devicec

diagnostic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000104

has super-classes
health care processc

diagramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000309

has super-classes
figurec
has sub-classes
graphc

dialysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600052

has super-classes
material component separationc
achieves_planned_objectiveop some separation into different composition objectivec

digestive system fluid or secretion specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002504

is equivalent to
bodily fluid specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some digestive system secreted substancec)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
bodily fluid specimenc
has sub-classes
bile specimenc

digestive system secreted substancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0006911

has super-classes
organism substancec

digestive tractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001555

has super-classes
material anatomical entityc

digestive tract specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003483

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some digestive tractc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc
has sub-classes
colon specimenc, esophagogastric junction specimenc, esophagus mucosa specimenc, esophagus muscularis mucosa specimenc, ileum specimenc, rectal swab specimenc, sigmoid colon specimenc, stomach specimenc

directive about research of biospecimensc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000310

has super-classes
directive information entityc

directive information entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000033

has super-classes
information content entityc
is aboutop some realizable entityc
has sub-classes
action specificationc, allowed research scope in informed consent formc, conditional specificationc, confidentiality directivec, consent language directivec, consequent directivec, contact directivec, contact method directivec, data format specificationc, data sharing directivec, deontic power role directivec, directive about research of biospecimensc, disclosure directivec, eligibility criterionc, ethics directivec, future use directivec, genetic testing directivec, informed consent rule specificationc, liability directivec, objective specificationc, obligation directivec, owner role directivec, permission condition directivec, permission directivec, permission transfer directivec, plan specificationc, recontact method directivec, research method directivec, restriction directivec, role directivec, source code modulec, trigger condition directivec, user input directivec, vulnerable population directivec, waiver directivec, withdrawal from participation directivec

disclosure directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000239

has super-classes
directive information entityc

discussion section of a publication about an investigationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000319

has super-classes
document partc

disease category researchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000040

has super-classes
biomedical researchc

disease or disorderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MONDO_0000001

has super-classes
dispositionc

disease specific researchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000007

This term should be coupled with a term describing a disease from an ontology to specify the disease the restriction applies to. DUO recommends MONDO be used, to provide the basis for automated evaluation. For more information see https://github.com/EBISPOT/DUO/blob/master/MONDO_Overview.md Other resources, such as the Disease Ontology, HPO, SNOMED-CT or others, can also be used. When those other resources are being used, this may require an extra mapping step to leverage automated matching algorithms.
has super-classes
health or medical or biomedical researchc
is restricted toop some disease or disorderc

disorderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000045

has super-classes
material entityc
has sub-classes
injuryc

dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000016

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
realizable entityc
has sub-classes
capability to consentc, cognitive impairmentc, disease or disorderc, functionc, riskc, vulnerabilityc
is in range of
has dispositionop
is disjoint with
rolec

DNA extractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001051

is equivalent to
nucleic acid extractc and (is specified output ofop some DNA extractionc) and (has grainop some deoxyribonucleic acidc)
has super-classes
nucleic acid extractc
has sub-classes
high molecular weight DNA extractc

DNA extractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000257

has super-classes
nucleic acid extractionc
has specified outputop some DNA extractc

documentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000310

has super-classes
information content entityc
has sub-classes
Institutional Review Board Approvalc, document act input documentc, document in preparation for publicationc, identity documentc, informed assent formc, medical recordc, patentc, publicationc, questionnairec, regulatory documentc, reportc, source code repositoryc, waiver documentc

document act input documentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021007

has super-classes
documentc
has sub-classes
informed consent formc

document act performer rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021031

has super-classes
rolec
(characteristic ofop some Homo sapiensc or organizationc or collection of humansc or aggregate of organizationsc) and (realized inop only obsolete_deontic document actc)

document act template creator rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021021

has super-classes
rolec
characteristic ofop some (Homo sapiensc or organizationc or collection of humansc or aggregate of organizationsc) and (realized inop only planned processc and (has specified outputop some documentc and (participates inop some obsolete_deontic document actc)))

document in preparation for publicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000445

has super-classes
documentc

document partc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000314

has super-classes
information content entityc
part ofop some documentc
has sub-classes
abbreviations sectionc, abstractc, acknowledgements sectionc, author contributions sectionc, author information sectionc, author listc, author summary sectionc, availability sectionc, case report sectionc, conclusion sectionc, conflict of interest sectionc, consent sectionc, copyright sectionc, descriptive data sectionc, discussion section of a publication about an investigationc, ethical approval sectionc, figures sectionc, footnotec, funding source declaration sectionc, future directions sectionc, genome announcement sectionc, institution listc, introduction to a publication about an investigationc, keywords sectionc, materials sectionc, methods sectionc, notes sectionc, optional informed consent elementc, part of informed consent formc, patients sectionc, pre-publication history sectionc, references sectionc, related work sectionc, required informed consent elementc, requirements sectionc, research participants sectionc, research settings sectionc, results sectionc, signature sectionc, statistical analysis sectionc, study limitations sectionc, supplementary material to a documentc, tables sectionc

document titlec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000305

has super-classes
textual entityc
has sub-classes
running titlec

documented identityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020022

is an aggregate of ICEs also an ICE? yes Is part_of the appropriate relation to use for data items and documented identities?
has super-classes
information content entityc
(has partop some information content entityc) and (inverse is aboutop some identity documentc) and (has partop only information content entityc)

documentingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000572

has super-classes
planned processc
has specified inputop some information content entityc
has specified outputop some documentc

dot plotc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000037

has super-classes
graphc

drawing a conclusion based on datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000338

has super-classes
planned processc
has specified inputop some data itemc
has specified outputop some conclusion based on datac

drug development researchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000039

has super-classes
biomedical researchc

drug testing investigationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000053

has super-classes
investigationc

economic vulnerabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000263

has super-classes
vulnerabilityc

editors ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000002

has super-classes
ontology modulec

education processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00002029

An interesting question is whether there must be another participant who is the "educator". Some might object that many people are "self taught". A real case of being self taught is the first person who learned to play a stringed instrument, or to spin a ball on the tip of a finger. There was no previous information about that type of skill. The ICEs acquired are via one's sensory systems (vision, proprioception, auditory, etc.). On the other hand, in the case of those who are self-taught by reading books or watching videos, or acquiring some other form of ICEs concretized outside their brain, one argument might be that the author of those ICEs somehow "plays a role" in the education, although they cannot participate in the education process itself (If I read Aristotle, and through repeated application of the information I acquire through doing so, develop the ability to write better ontology definitions, surely Aristotle did not actively participate in my particular education process, although he did influence it in a very real way).
has super-classes
planned processc

educational vulnerabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000264

has super-classes
vulnerabilityc

effective date specification in informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000025

has super-classes
temporal region identifierc

EL++ ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000020

has super-classes
ontology module subsetted by OWL profilec

eligibility criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500026

has super-classes
directive information entityc
has sub-classes
exclusion criterionc, inclusion criterionc

eligibility of candidate participationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000146

has super-classes
rolec

eligibility questionnairec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000140

has super-classes
questionnairec

eligibility screening processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000150

has super-classes
planned processc

eligibility screening rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000151

has super-classes
rolec

email addressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000429

has super-classes
information content entityc

employer rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000087

has super-classes
obsolete role in human social processesc

endotracheal aspirate specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002972

has super-classes
lower respiratory tract aspirate specimenc
(is specified output ofop some specimen collection processc) and (derives fromop some respiratory system fluid/secretionc)
is specified output ofop some aspiration specimen collectionc

endotracheal tube specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002971

has super-classes
lower respiratory tract specimenc
(is specified output ofop some specimen collection processc) and (derives fromop some respiratory system fluid/secretionc)
is specified output ofop some collecting specimen from organismc

entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000001

is defined by
http://purl.obolibrary.org/obo/bfo.owl
from BFO
has super-classes
thingc
has sub-classes
continuantc, occurrentc
is in domain of
denoted byop
is in range of
denotesop

environmental materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00010483

has super-classes
material entityc

environmental swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002613

is equivalent to
specimenc and (is specified output ofop some collecting specimen with swabc) and (is specified output ofop some specimen collection processc and (has specified inputop some environmental materialc))
has super-classes
swab specimenc

erythrocytec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000232

has super-classes
cellc

erythrocyte specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000016

is equivalent to
cell specimenc and (is specified output ofop some collecting specimen from organismc) and (is specified output ofop some specimen collection processc and (has specified inputop some erythrocytec))
has super-classes
cell specimenc

esophagogastric junctionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0007650

has super-classes
material anatomical entityc

esophagogastric junction specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002544

is equivalent to
digestive tract specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some esophagogastric junctionc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
digestive tract specimenc

esophagus mucosac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002469

has super-classes
material anatomical entityc

esophagus mucosa specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002532

is equivalent to
digestive tract specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some esophagus mucosac))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
digestive tract specimenc

esophagus muscularis mucosac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0004648

has super-classes
tissuec

esophagus muscularis mucosa specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002535

is equivalent to
digestive tract specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some esophagus muscularis mucosac))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
digestive tract specimenc

establishing cell culturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600036

A 'cell culture' as used here referes to a new lineage of cells in culture deriving from a single biological source.. New cultures are established through the initial isolation and culturing of cells from an organismal source, or through changes in an existing cell culture or line that result in a new culture with unique characteristics. This can occur through the passaging/selection of a primary culture into a secondary culture or line, or experimental modifications of an existing cell culture or line such as an immortalization process or other stable genetic modification. This class covers establishment of cultures of either multicellular organism cells or unicellular organisms.
has super-classes
material processingc
has specified inputop some cellc
has specified inputop some culture mediumc
has specified outputop some cultured cell populationc
achieves_planned_objectiveop some material transformation objectivec

ethical approval sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000620

has super-classes
document partc
has partop some ethical approval textual entityc

ethical approval textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000621

has super-classes
textual entityc
is aboutop some study designc

ethics approval requiredc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000021

has super-classes
data use modifierc

ethics directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000059

has super-classes
directive information entityc

ethnicity inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002563

has super-classes
inclusion criterionc

Euarchontogliresc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_314146

has super-classes
Mammaliac
has sub-classes
Homo sapiensc

Eukaryotac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2759

has super-classes
organismc
has sub-classes
Opisthokontac

Euteleostomic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_117571

has super-classes
Vertebrata <vertebrates>c
has sub-classes
Tetrapodac

excess material rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000313

has super-classes
rolec

exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500028

has super-classes
eligibility criterionc
has sub-classes
HIV exclusion criterionc, blood transfusion exclusion criterionc, chemotherapy treatment exclusion criterionc, chemotherapy treatment within the recent past exclusion criterionc, exposure to blood borne infectious disease exclusion criterionc, history of metastatic cancer exclusion criterionc, history of sex with someone with a history of blood borne infection exclusion criterionc, history of sex with someone with a history of intravenous drugs exclusion criterionc, intravenous drug use exclusion criterionc, radiation treatment exclusion criteriac, radiation treatment within the recent past exclusion criterionc

exclusion subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000010

has super-classes
subset ontology modulec

experimentally modified cell in vitroc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000578

has super-classes
cellc
processed materialc
is specified output ofop some material processingc
has sub-classes
cultured cellc

explaining benefits of participation to participant candidatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000121

has super-classes
explaining to participant candidate in informed consent processc

explaining record confidentiality to participant candidatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000135

has super-classes
explaining to participant candidate in informed consent processc

explaining risks of participation to participant candidatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000128

has super-classes
explaining to participant candidate in informed consent processc

explaining sample process and usage to participant candidatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000133

has super-classes
explaining to participant candidate in informed consent processc

explaining study derived data usage to participant candidatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000134

has super-classes
explaining to participant candidate in informed consent processc

explaining study protocol to participant candidatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000117

has super-classes
explaining to participant candidate in informed consent processc

explaining study purpose to participant candidatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000105

has super-classes
explaining to participant candidate in informed consent processc

explaining to participant candidate about the study participating informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000098

has super-classes
planned processc

explaining to participant candidate in informed consent processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000154

has super-classes
planned processc
has sub-classes
explaining benefits of participation to participant candidatec, explaining record confidentiality to participant candidatec, explaining risks of participation to participant candidatec, explaining sample process and usage to participant candidatec, explaining study derived data usage to participant candidatec, explaining study protocol to participant candidatec, explaining study purpose to participant candidatec

exposure to blood borne infectious disease exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002435

has super-classes
exclusion criterionc

external import ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000011

has super-classes
import ontology modulec

extractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302884

has super-classes
material component separationc
achieves_planned_objectiveop some separation into different composition objectivec
has sub-classes
nucleic acid extractionc

eyec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000970

has super-classes
material anatomical entityc

eye specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000004

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some eyec))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc
has sub-classes
vitreous humor specimenc

family status inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002560

has super-classes
inclusion criterionc

fecal swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002612

is equivalent to
feces specimenc and (is specified output ofop some collecting specimen with swabc) and (is specified output ofop some specimen collection processc and (has specified inputop some fecesc))
has super-classes
feces specimenc
swab specimenc

fecesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001988

has super-classes
organism substancec
has sub-classes
meconiumc

feces specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002503

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some fecesc)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc
has sub-classes
fecal swab specimenc, meconium specimenc

female pregnancyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0007565

has super-classes
processc

FFPE specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_1200000

has super-classes
paraffin specimenc

fiat object partc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000024

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
material entityc

figurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000308

has super-classes
information content entityc
has sub-classes
diagramc, imagec

figures sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000622

has super-classes
document partc
has partop some figurec

filled multiple choice text entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000171

has super-classes
textual entityc
has sub-classes
no answer text entityc, yes answer text entityc

filled questionnairec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000170

has super-classes
questionnairec

filling informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000174

has super-classes
planned processc

filling questionnairec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000175

has super-classes
planned processc

filter functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000378

has super-classes
material separation functionc

filter paperc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000151

has super-classes
material separation devicec
has functionop some filter functionc

filtrationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302885

has super-classes
material component separationc
achieves_planned_objectiveop some separation into different composition objectivec
has participantop some filter paperc

fixed tissue slide specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000052

has super-classes
fixed tissue specimenc
has sub-classes
H&E-stained fixed tissue slide specimenc, IHC-stained fixed tissue slide specimenc

fixed tissue specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMIABIS_0000050

has super-classes
processed specimenc
has sub-classes
fixed tissue slide specimenc

footnotec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000325

has super-classes
document partc
is aboutop some document partc

for-profit research investigationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000057

has super-classes
investigationc
has agentop some profit organizationc

freezing storagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000915

has super-classes
storagec
(has specified inputop some material entityc and (has qualityop some frozenc)) and (has specified outputop some material entityc and (has qualityop some frozenc))
achieves_planned_objectiveop some material maintenance objectivec

fresh specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000971

has super-classes
specimen with known storage statec

frozenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001985

has super-classes
temperaturec

frozen specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000922

is equivalent to
specimenc and (is specified output ofop some freezing storagec and (has specified inputop some has roleop some specimen rolec))
has super-classes
specimen with known storage statec

functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000034

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
dispositionc
has sub-classes
contain functionc, data administration functionc, material separation functionc, measure functionc, mechanical functionc
is in domain of
function ofop
is in range of
has functionop

funding source declaration sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000623

has super-classes
document partc
has partop some funding source declaration textual entityc

funding source declaration textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000624

has super-classes
textual entityc

future directions sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000625

has super-classes
document partc
has partop some future directions textual entityc

future directions textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000626

has super-classes
textual entityc

future use directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000295

has super-classes
directive information entityc

gender category researchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000035

Should be paired with the an ontology term representing this population (e.g., xxx).
has super-classes
investigationc

general research usec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000042

This includes but is not limited to: health/medical/biomedical purposes, fundamental biology research, the study of population origins or ancestry, statistical methods and algorithms development, and social-sciences research.
has super-classes
data use permissionc
has sub-classes
health or medical or biomedical researchc

generated ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000014

has super-classes
ontology modulec
has sub-classes
template generated ontology modulec

generically dependent continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000031

is defined by
http://purl.obolibrary.org/obo/bfo.owl
A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.
has super-classes
continuantc
has sub-classes
information content entityc, regionc
is in domain of
is concretized asop
is in range of
concretizesop
is disjoint with
independent continuantc, specifically dependent continuantc

genetic alteration informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001364

has super-classes
genetic characteristics informationc

genetic characteristics informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001404

has super-classes
data itemc
is aboutop some regionc and (is concretized asop some characteristic ofop some nucleic acidc and (part ofop some organismc))
has sub-classes
genetic alteration informationc, genetic population background informationc, genotype informationc

genetic population background informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001225

has super-classes
genetic characteristics informationc
part ofop some genotype informationc

genetic researchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000038

has super-classes
biomedical researchc

genetic studies onlyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000016

has super-classes
data use modifierc

genetic testing directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000312

has super-classes
directive information entityc
prescribesop some act of genetic testingc

genome announcement sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000627

has super-classes
document partc
has partop some genome announcement textual entityc

genome announcement textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000628

has super-classes
textual entityc

genotype informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001305

has super-classes
genetic characteristics informationc
(has partop some genetic population background informationc) and (has partop some genetic alteration informationc)

geographic locationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00000448

has super-classes
sitec
is also defined as
named individual

geographical restrictionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000022

This should be coupled with an ontology term describing the geographical location the restriction applies to.
has super-classes
data use modifierc
is restricted toop some geographic locationc

governmentc back to ToC or Class ToC

IRI: http://www.ontologyrepository.com/CommonCoreOntologies/Government

Date :
Imported 8.30.2018
has super-classes
organizationc

governmental organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000400

has super-classes
organizationc

grant agencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001942

has super-classes
organizationc

graphc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000038

has super-classes
diagramc
has sub-classes
Venn diagramc, contour plotc, dendrogramc, density plotc, dot plotc, heatmapc, histogramc, line graphc, scatter plotc

graphical abstractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000707

has super-classes
abstractc

gravidity inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002456

has super-classes
inclusion criterionc

H&E slide stainingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002124

has super-classes
stainingc
stainingc and (has specified inputop some fixed tissue slide specimenc)

H&E-stained fixed tissue slide specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002125

is equivalent to
fixed tissue slide specimenc and (is specified output ofop some H&E slide stainingc)
has super-classes
fixed tissue slide specimenc

hair specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002517

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some strand of hairc)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

health care processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000096

has super-classes
planned processc
has sub-classes
diagnostic processc

health care provider organization rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000015

Authors :
Amanda Hicks
Contributors :
Mathias Brochhausen
has super-classes
organization health care rolec
has sub-classes
hospital rolec

health information entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000101

has super-classes
information content entityc
has sub-classes
protected health information entityc

health or medical or biomedical researchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000006

has super-classes
general research usec
has sub-classes
disease specific researchc

health status inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002453

has super-classes
inclusion criterionc

heartc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000948

has super-classes
material anatomical entityc

heart specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002520

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some heartc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

heatmapc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000180

has super-classes
graphc

high molecular weight DNA extractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000834

has super-classes
DNA extractc

histogramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000179

has super-classes
graphc

histological sample preparationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000341

has super-classes
material processingc
specimen collection processc
has specified inputop some organ sectionc
achieves_planned_objectiveop some material transformation objectivec
achieves_planned_objectiveop some specimen collection objectivec
has participantop some microtomec

historyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000182

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
processc
is disjoint with
process profilec

history of metastatic cancer exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002430

has super-classes
exclusion criterionc

history of sex with someone with a history of blood borne infection exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002432

has super-classes
exclusion criterionc

history of sex with someone with a history of intravenous drugs exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002433

has super-classes
exclusion criterionc

HIV exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002434

has super-classes
exclusion criterionc

Homo sapiensc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9606

has super-classes
agentc
Euarchontogliresc
has sub-classes
consenterc, contact person for questions about researchc, contact person for questions about research subject rightsc, contact person in informed consent processc, human subject consenterc, human subject unable to give informed consentc, patientc

hospital governing body rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OOSTT_00000062

Date :
Imported 8.30.2018
has super-classes
rolec

hospital organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000056

is equivalent to
organizationc and (bearer ofop some hospital rolec)
has super-classes
organizationc

hospital patient inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002559

has super-classes
inclusion criterionc

hospital rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000054

has super-classes
health care provider organization rolec

human populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000047

has super-classes
populationc

human research investigationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000054

has super-classes
investigationc

human subject consenterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000040

has super-classes
Homo sapiensc

human subject research regulatory documentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000234

has super-classes
regulatory documentc

human subject signature section in informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000020

has super-classes
signature sectionc

human subject unable to give informed consentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000062

has super-classes
Homo sapiensc

human subject-specified contact person rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000229

has super-classes
contact person rolec

hypothesis textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000415

has super-classes
textual entityc

identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020000

has super-classes
information content entityc
has sub-classes
centrally registered identifierc, postal codec

identity documentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0020021

is equivalent to
documentc and (is aboutop some documented identityc) and (is concretized asop some specifically dependent continuantc and (characteristic ofop some bearer ofop some credential rolec)) and (is concretized asop only specifically dependent continuantc and (characteristic ofop some bearer ofop some credential rolec))
has super-classes
documentc

IHC slide stainingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002123

has super-classes
stainingc
stainingc and (has specified inputop some fixed tissue slide specimenc)

IHC-stained fixed tissue slide specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002126

is equivalent to
fixed tissue slide specimenc and (is specified output ofop some IHC slide stainingc)
has super-classes
fixed tissue slide specimenc

ileumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002116

has super-classes
material anatomical entityc

ileum specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002545

is equivalent to
digestive tract specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some ileumc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
digestive tract specimenc

imagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000101

has super-classes
figurec
has sub-classes
photographc

immaterial entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000141

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
independent continuantc
has sub-classes
continuant fiat boundaryc, sitec, spatial regionc
is in range of
has 2D boundaryop
is disjoint with
material entityc

import ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000005

has super-classes
subset ontology modulec
has sub-classes
external import ontology modulec

Incarcerationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C85521

has super-classes
processc

inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500027

has super-classes
eligibility criterionc
has sub-classes
BMI range inclusion criterionc, age group inclusion criterionc, age of majority inclusion criterionc, clinically relevant exposure inclusion criterionc, clinically relevant lifestyle inclusion criterionc, country of residence inclusion criteriac, defined population inclusion criterionc, ethnicity inclusion criterionc, family status inclusion criterionc, gravidity inclusion criterionc, health status inclusion criterionc, hospital patient inclusion criterionc, sex inclusion criterionc, use of medication inclusion criterionc

incomplete informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000213

Note: instances of 'incomplete informed consent form' include both blank informed consent forms that are waiting to be used in a process of informed consent, as well as those that have been left blank by a patient, whether on purpose or in error. Those that have been left blank on purpose have been used in a process of informed consent, where the patient must have reached a decision.
has super-classes
informed consent formc

independent continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000004

is defined by
http://purl.obolibrary.org/obo/bfo.owl
A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.
has super-classes
continuantc
has sub-classes
immaterial entityc, material entityc
is in domain of
has dispositionop, has functionop, has roleop, located inop
is in range of
located inop, occurs inop
is disjoint with
specifically dependent continuantc, generically dependent continuantc

individual organism specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002648

is equivalent to
specimenc and (has componentop exactly 1 organismc)
has super-classes
specimenc

individually identifiable health information entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000083

has super-classes
protected health information entityc

induced sputum specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002746

has super-classes
sputum specimenc
(is specified output ofop some specimen collection processc) and (derives fromop some sputumc)
is specified output ofop some collecting specimen from organismc

information carrierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000015

is equivalent to
qualityc and (concretizesop some information content entityc)
has super-classes
qualityc

information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000030

has super-classes
generically dependent continuantc
is aboutop some entityc
has sub-classes
Designative Information Content Entityc, Topicc, anonymized information content entityc, conclusion based on datac, data itemc, datum labelc, descriptive information content entityc, directive information entityc, documentc, document partc, documented identityc, email addressc, figurec, health information entityc, identifierc, legal agec, narrative objectc, signaturec, symbolc, temporal region identifierc, textual entityc, value specificationc
is in domain of
denotesop, has value specificationop, is aboutop
is in range of
denoted byop

information content entity-request processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000198

As with the parent class, 'participant' in the definition need not refer to a human agent.
has super-classes
obsolete communicationc

informed assent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000085

has super-classes
documentc
has sub-classes
informed assent form for child or minorc, informed assent form for cognitively impairedc

informed assent form for child or minorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000032

has super-classes
informed assent formc

informed assent form for cognitively impairedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000185

has super-classes
informed assent formc

informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000001

is equivalent to
incomplete informed consent formc or complete informed consent form indicating consentc
has super-classes
document act input documentc
has sub-classes
complete informed consent form indicating consentc, completely filled informed consent formc, incomplete informed consent formc, informed consent form containing questionnairec, informed consent form for clinical research involving childrenc, informed consent form for clinical studyc, informed consent form for genetic studyc, informed consent form for human biospecimen collectionc, informed consent form for human blood sample collectionc, informed consent form for human saliva sample collectionc, informed consent form for human urine biospecimen collectionc, informed consent form for qualitative research involving childrenc, informed consent form for qualitative studyc, informed consent form for storage and future use of unused samplesc, informed consent form for vaccinationc, informed consent form signed by human subjectc, partially filled informed consent formc, signed informed consent formc
is in domain of
obsolete is associated with review board approval numberop

informed consent form containing questionnairec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000104

has super-classes
informed consent formc

informed consent form for clinical research involving childrenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000034

has super-classes
informed consent formc

informed consent form for clinical studyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000029

has super-classes
informed consent formc

informed consent form for genetic studyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000061

has super-classes
informed consent formc

informed consent form for human biospecimen collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000013

has super-classes
informed consent formc

informed consent form for human blood sample collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000014

has super-classes
informed consent formc

informed consent form for human saliva sample collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000129

has super-classes
informed consent formc

informed consent form for human urine biospecimen collectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000099

has super-classes
informed consent formc

informed consent form for qualitative research involving childrenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000033

has super-classes
informed consent formc

informed consent form for qualitative studyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000031

has super-classes
informed consent formc

informed consent form for storage and future use of unused samplesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000030

has super-classes
informed consent formc

informed consent form for vaccinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000138

has super-classes
informed consent formc

informed consent form signed by human subjectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000018

has super-classes
informed consent formc

informed consent form signing datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000036

has super-classes
temporal region identifierc

informed consent identification codec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000044

has super-classes
data itemc

informed consent processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000810

has super-classes
planned processc
has specified inputop some Homo sapiensc
has participantop some has roleop some investigation agent rolec
has sub-classes
adult consent processc, consenting in short formc, informed consent process with assentc, parental informed consent processc

informed consent process with assentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000084

is equivalent to
informed consent processc and (has partop some act of communicating assentc)
has super-classes
informed consent processc

informed consent regulatory bodyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000006

has super-classes
organizationc

informed consent regulatory documentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000235

has super-classes
regulatory documentc

informed consent rulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000236

has super-classes
rulec

informed consent rule specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000041

has super-classes
directive information entityc
has sub-classes
obligation informed consent rule specificationc, permission informed consent rule specificationc

informed verbal consentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000159

has super-classes
act of informed consentingc

injuryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000102

has super-classes
disorderc
has sub-classes
research-related injuryc

institution listc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000322

has super-classes
document partc
has partop some institutional identificationc

institution specific restrictionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000028

has super-classes
data use modifierc

institutional identificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000303

has super-classes
textual entityc

institutional review boardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000079

has super-classes
organizationc

Institutional Review Board Approvalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C70800

has super-classes
documentc

institutional review board approval numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000131

has super-classes
review board approval numberc

integer numeralc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000031

has super-classes
numeralc

intravenous drug use exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002431

has super-classes
exclusion criterionc

introduction to a publication about an investigationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000316

has super-classes
document partc
is aboutop some objective specificationc

investigationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000066

has super-classes
planned processc
has partop some documentingc
has partop some drawing a conclusion based on datac
has partop some study design executionc
has partop some planningc and (has specified outputop some study designc)
has sub-classes
age category researchc, ancestry researchc, biomedical researchc, cancer research investigationc, clinical trialc, drug testing investigationc, for-profit research investigationc, gender category researchc, human research investigationc, method developmentc, nonprofit research investigationc, population researchc, research controlc, study requiring informed consentc

investigation agent rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000202

Philly2013: Historically, this role would have been borne only by humans or organizations. However, we now also want to enable investigations run by robot scientists such as ADAM (King et al, Science, 2009)
is equivalent to
rolec and (characteristic ofop some bearer ofop some concretizesop some objective_achieved_byop some part ofop some investigationc)
has super-classes
rolec
realized inop only investigationc
has sub-classes
responsible party rolec

investigation objective specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000314

has super-classes
objective specificationc

investigation periodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000058

has super-classes
one-dimensional temporal regionc

investigation titlec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001622

has super-classes
comment on investigationc
denotesop some investigationc
has sub-classes
clinical trial titlec

investigator rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000045

has super-classes
rolec

investigator role directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000319

has super-classes
role directivec

investigator signature section in informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000021

has super-classes
signature sectionc

journal articlec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000013

has super-classes
reportc
publicationc
is specified output ofop some publishing processc
is specified output ofop only publishing processc

jurisdictionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000231

has super-classes
sitec

jurisdiction restriction directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000360

(1) 'Jurisdiction' is often defined in two senses: (1) a geopolitical context (BFO site), or (2) a power. We define jurisdiction as a BFO site, identifiable through shared context of other entities, like a country or state border. The term ‘deontic power role’ reflects the sense of ‘power’ sometimes used to describe jurisdiction.
has super-classes
permission restriction directivec

keyword textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000629

has super-classes
textual entityc

keywords sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000630

has super-classes
document partc
has partop some keyword textual entityc

labeled DNA extractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000908

is equivalent to
labeled nucleic acid extractc and (is specified output ofop some addition of molecular labelc and (has specified inputop some DNA extractc)) and (has grainop some deoxyribonucleic acidc)
has super-classes
labeled nucleic acid extractc

labeled nucleic acid extractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001143

is equivalent to
labeled specimenc and (is specified output ofop some addition of molecular labelc and (has specified inputop some nucleic acid extractc)) and (has grainop some nucleic acidc)
has super-classes
labeled specimenc
has sub-classes
labeled DNA extractc, labeled RNA extractc

labeled RNA extractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000921

is equivalent to
labeled nucleic acid extractc and (is specified output ofop some addition of molecular labelc and (has specified inputop some RNA extractc)) and (has grainop some ribonucleic acidc)
has super-classes
labeled nucleic acid extractc

labeled specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000924

is equivalent to
specimenc and (has partop some molecular labelc) and (is specified output ofop some addition of molecular labelc)
has super-classes
processed specimenc
molecular-labeled materialc
has sub-classes
labeled nucleic acid extractc

laboratory findingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000018

has super-classes
clinical findingc

lavagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600044

has super-classes
collecting specimen from organismc
material component separationc
achieves_planned_objectiveop some material separation objectivec

lavage fluid specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003666

is equivalent to
specimen from organismc and (is specified output ofop some lavagec)
has super-classes
processed specimenc
specimen from organismc
has sub-classes
bronchial alveolar lavagec, nasal lavage fluidc, oral lavage fluidc

legal agec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000256

has super-classes
information content entityc

legal guardian rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000081

has super-classes
rolec

legal namec back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_000184

has super-classes
author identificationc

legal person rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000038

We are aware of the fact that Wikipedia's definition differs from ours by saying that "Legal personality (...) is the characteristic of a non-living entity regarded by law to have the status of personhood" (http://en.wikipedia.org/wiki/Legal_personality) However, Shaw explicates: "In any legal system, certain entities, whether they be individuals or companies, will be regarded as possessing rights and duties enforceable at law. Thus an individual may prosecute or be prosecuted for assault and a company can sue for breach of contract. They are able to do this because the law recognises them as 'legal persons' possessing the capacity to have and to maintain certain rights, and being subject to perform specific duties. (...) In municipal law individuals, limited companies and public corporations are recognized as each possessing a distinct legal personality, the terms of which are circumscribed by the relevant legislation" (Shaw MN: International Law. Sixth Edition. Cambridge University Press, Cambridge, 2008). We hold that Shaw's position is ontological more prolific since it not only allows to explain how groups of individuals become recognized as unities at law, but also how different individuals can hold different legal personality roles (always against the context of one legal system). The latter will proof useful when dealing with the representing comatous patients or minorsat law in ontologies.
has super-classes
rolec

legal representative rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000187

has super-classes
rolec

legally authorized representative role directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000320

has super-classes
role directivec

legally effective consented participant rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000144

has super-classes
rolec

legally effective consentingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000142

has super-classes
planned processc

lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000122

has super-classes
morphologyc

length measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000408

has super-classes
scalar measurement datumc
has measurement unit labelop some length unitc
is quality measurement ofop some lengthc

length unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000001

has super-classes
measurement unit labelc
is in range of
has coordinate unit labelop

leukocytec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000738

has super-classes
cellc

leukocyte specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000018

is equivalent to
cell specimenc and (is specified output ofop some collecting specimen from organismc) and (is specified output ofop some specimen collection processc and (has specified inputop some leukocytec))
has super-classes
cell specimenc

liability directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000250

has super-classes
directive information entityc

limited data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000426

has super-classes
protected health information entityc

line graphc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000573

has super-classes
graphc

liverc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002107

has super-classes
material anatomical entityc

liver specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002546

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some liverc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

looking up a centrally registered identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000580

has super-classes
planned processc
has specified inputop some centrally registered identifier symbolc
has specified outputop some information content entityc
has participantop some centrally registered identifier registryc

lot numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000132

has super-classes
symbolc

lower respiratory tractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001558

has super-classes
material anatomical entityc

lower respiratory tract aspirate specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002781

is equivalent to
lower respiratory tract specimenc and (is specified output ofop some aspiration specimen collectionc) and (is specified output ofop some specimen collection processc and (has specified inputop some lower respiratory tractc))
has super-classes
lower respiratory tract specimenc
has sub-classes
endotracheal aspirate specimenc, tracheal aspirate specimenc

lower respiratory tract specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002783

is equivalent to
respiratory system specimenc and (is specified output ofop some specimen collection processc and (has specified inputop some lower respiratory tractc))
has super-classes
respiratory system specimenc
has sub-classes
endotracheal tube specimenc, lower respiratory tract aspirate specimenc, lung specimenc

lungc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002048

has super-classes
material anatomical entityc

lung specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002534

is equivalent to
lower respiratory tract specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some lungc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
lower respiratory tract specimenc

lymphc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002391

has super-classes
bodily fluidc

lymph nodec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000029

has super-classes
material anatomical entityc

lymph node cell specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_1110041

is equivalent to
cell specimenc and (is specified output ofop some organ harvestingc and (has specified inputop some lymph nodec))
has super-classes
processed specimenc
cell specimenc

lymph specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003482

is equivalent to
bodily fluid specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some lymphc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
bodily fluid specimenc

lyophilization storagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000927

can link to freezing-dying equipment, such as freeze-dryer, rotary evaporator, if needed
has super-classes
storagec
has specified inputop some material entityc
achieves_planned_objectiveop some material maintenance objectivec

lyophilized specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000965

is equivalent to
specimenc and (is specified output ofop some lyophilization storagec and (has specified inputop some has roleop some specimen rolec))
has super-classes
specimen with known storage statec

macromoleculec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_33839

has super-classes
molecular entityc
has sub-classes
nucleic acidc, peptidec

main release ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000003

has super-classes
ontology modulec

maintaining cell culturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600024

has super-classes
material maintenancec
has specified inputop some cultured cell populationc
has specified inputop some culture mediumc or cell freezing mediumc
has specified outputop some cultured cell populationc
achieves_planned_objectiveop some material maintenance objectivec

Mammaliac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_40674

has super-classes
Amniotac
has sub-classes
Euarchontogliresc

massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000125

has super-classes
physical qualityc

mass measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000414

has super-classes
scalar measurement datumc
(has measurement unit labelop only mass unitc) and (is quality measurement ofop only massc)

mass unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000002

has super-classes
measurement unit labelc

material anatomical entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000465

has super-classes
material entityc
has sub-classes
adrenal glandc, anterior nasal wallc, aortac, areolac, arteryc, brainc, breastc, cerebral cortexc, cheekc, chorionic villusc, cloacac, colonc, cortex of kidneyc, digestive tractc, esophagogastric junctionc, esophagus mucosac, eyec, heartc, ileumc, liverc, lower respiratory tractc, lungc, lymph nodec, middle nasal conchac, minor salivary glandc, mouthc, multi-tissue structurec, nasal cavity mucosac, nasopharynxc, omentumc, organism substancec, oropharynxc, ovaryc, pancreasc, pituitary glandc, placentac, prostate glandc, rectumc, respiratory systemc, sigmoid colonc, skin of bodyc, spleenc, stomachc, strand of hairc, suprapubic skinc, testisc, throatc, thyroid glandc, tibial nervec, tissuec, tonguec, tracheac, upper respiratory tractc, urethrac, urinary bladderc, uterine cervixc, uterusc, vaginac

material combinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000652

is equivalent to
achieves_planned_objectiveop some material combination objectivec
has super-classes
material processingc
has specified inputop some material entityc
has specified outputop some material entityc
has sub-classes
adding a material entity into a targetc

material combination objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000686

has super-classes
material transformation objectivec
has sub-classes
adding material objectivec

material component separationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600014

is equivalent to
achieves_planned_objectiveop some material separation objectivec
has super-classes
material processingc
has specified inputop some material entityc
has specified outputop some material entityc
has sub-classes
centrifugationc, dialysisc, extractionc, filtrationc, lavagec, organ harvestingc

material disposalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHMO_0002832

makes no judgement about whether this is a good way to do it, or a bad way such as tipping down the sink.
has super-classes
waste managementc

material entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000040

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
independent continuantc
has sub-classes
agentc, aggregate of organizationsc, anatomical clusterc, cellc, collection of organismsc, disorderc, environmental materialc, fiat object partc, material anatomical entityc, material information bearerc, molecular entityc, objectc, object aggregatec, organismc, populationc, processed materialc, residual clinical biospecimenc, specimenc, target of material additionc
is in domain of
has 2D boundaryop
is disjoint with
immaterial entityc

material information bearerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000178

is equivalent to
material entityc and (bearer ofop some concretizesop some information content entityc)
has super-classes
material entityc
has sub-classes
photographic printc

material maintenancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000838

is equivalent to
achieves_planned_objectiveop some material maintenance objectivec
has super-classes
planned processc
has sub-classes
maintaining cell culturec, storagec

material maintenance objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000806

has super-classes
objective specificationc

material processingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000094

is equivalent to
achieves_planned_objectiveop some material transformation objectivec
has super-classes
planned processc
has specified outputop some processed materialc
has specified inputop only material entityc
has sub-classes
addition of molecular labelc, establishing cell culturec, histological sample preparationc, material combinationc, material component separationc, stainingc

material samplec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000747

is equivalent to
specimenc and (has roleop some material sample rolec)
has super-classes
specimenc
has sub-classes
sample from organismc

material sample rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000740

has super-classes
specimen rolec

material separation devicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000932

is equivalent to
devicec and (has functionop some material separation functionc)
has super-classes
devicec
has sub-classes
centrifugec, filter paperc, microtomec

material separation functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000372

has super-classes
functionc
has sub-classes
filter functionc

material separation objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000639

is equivalent to
portioning objectivec or separation into different composition objectivec
has super-classes
material transformation objectivec
has sub-classes
portioning objectivec, separation into different composition objectivec

material to be added rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000319

has super-classes
rolec

material transformation objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000456

has super-classes
objective specificationc
has sub-classes
material combination objectivec, material separation objectivec

materials sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000633

has super-classes
document partc

maximum age value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002557

has super-classes
value specificationc

measure functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000453

has super-classes
functionc
function ofop some processed materialc
realized inop only has specified outputop some measurement datumc

measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000109

has super-classes
data itemc
has value specificationop some value specificationc
has sub-classes
countc, scalar measurement datumc, study duration measurementc, time stamped measurement datumc
is in domain of
is quality measurement ofop

measurement devicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000832

is equivalent to
devicec and (has functionop some measure functionc)
has super-classes
devicec
has sub-classes
centrifugec

measurement methods sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000704

has super-classes
methods sectionc

measurement unit labelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000003

has super-classes
datum labelc
has sub-classes
length unitc, mass unitc, time unitc
is in range of
has measurement unit labelop

mechanical functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000379

has super-classes
functionc

meconiumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0007109

has super-classes
fecesc

meconium specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000011

is equivalent to
feces specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some meconiumc)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
feces specimenc

medical recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBIB_0000702

It is a chronological written account of examination, treatment, medical history or complaints.
has super-classes
documentc

Metazoac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33208

has super-classes
Opisthokontac
has sub-classes
Bilateriac

method developmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000031

has super-classes
investigationc

methods sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000317

has super-classes
document partc
is aboutop some study designc
has sub-classes
measurement methods sectionc

microtomec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0400168

has super-classes
material separation devicec
has functionop some material separation functionc
has functionop some mechanical functionc

mid-turbinate nasal swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002779

is equivalent to
nasal swab specimenc and (is specified output ofop some collecting specimen with swabc) and (is specified output ofop some specimen collection processc and (has specified inputop some middle nasal conchac))
has super-classes
nasal swab specimenc

middle nasal conchac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0005921

has super-classes
material anatomical entityc

milkc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001913

has super-classes
bodily fluidc

milk specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002505

is equivalent to
bodily fluid specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some milkc)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
bodily fluid specimenc

minimal riskc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000095

has super-classes
riskc

minimum age value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002556

has super-classes
value specificationc

minor rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000287

has super-classes
rolec

minor salivary glandc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001830

has super-classes
material anatomical entityc

minor salivary gland specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002547

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some minor salivary glandc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

model numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000017

has super-classes
symbolc

molecular entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_23367

has super-classes
material entityc
has sub-classes
macromoleculec, molecular labelc

molecular labelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002744

is equivalent to
molecular entityc and (has roleop some molecular label rolec)
has super-classes
molecular entityc
reagentc

molecular label rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002743

has super-classes
reagent rolec

molecular-labeled materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001936

is equivalent to
material entityc and (has partop some molecular labelc) and (is specified output ofop some addition of molecular labelc)
has super-classes
processed materialc
has sub-classes
labeled specimenc

mononuclear cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000842

has super-classes
cellc
has sub-classes
peripheral blood mononuclear cellc

morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000051

has super-classes
physical object qualityc
has sub-classes
lengthc

mouthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000165

has super-classes
material anatomical entityc

multi-tissue structurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000481

has super-classes
material anatomical entityc
has sub-classes
atrium auricular regionc, cerebellumc, renal medullac

narrative objectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000006

has super-classes
information content entityc

nasal aspirate specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002780

is equivalent to
upper respiratory tract specimenc and (is specified output ofop some aspiration specimen collectionc) and (is specified output ofop some specimen collection processc and (has specified inputop some nasal cavity mucosac))
has super-classes
upper respiratory tract specimenc

nasal cavity mucosac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001826

has super-classes
material anatomical entityc

nasal lavage fluidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003595

is equivalent to
lavage fluid specimenc and (is specified output ofop some lavagec) and (is specified output ofop some specimen collection processc and (has specified inputop some nasal cavity mucosac))
has super-classes
lavage fluid specimenc

nasal swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000917

is equivalent to
upper respiratory tract specimenc and (is specified output ofop some collecting specimen with swabc) and (is specified output ofop some specimen collection processc and (has specified inputop some nasal cavity mucosac))
has super-classes
swab specimenc
upper respiratory tract specimenc
has sub-classes
anterior nasal swab specimenc, mid-turbinate nasal swab specimenc

nasopharyngeal aspirate specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000914

has super-classes
nasopharynx specimenc
(is specified output ofop some specimen collection processc) and (derives fromop some nasopharynxc)
is specified output ofop some aspiration specimen collectionc

nasopharyngeal swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002606

is equivalent to
nasopharynx specimenc and (is specified output ofop some collecting specimen with swabc) and (is specified output ofop some specimen collection processc and (has specified inputop some nasopharynxc))
has super-classes
swab specimenc
nasopharynx specimenc

nasopharynxc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001728

has super-classes
material anatomical entityc

nasopharynx specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000007

is equivalent to
upper respiratory tract specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some nasopharynxc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
upper respiratory tract specimenc
has sub-classes
nasopharyngeal aspirate specimenc, nasopharyngeal swab specimenc

no answer text entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000173

has super-classes
filled multiple choice text entityc

no general methods researchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000015

has super-classes
data use modifierc

no restrictionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000004

20180907, Meeting Moran Melanie: This is to be thought about more carefully - what is the intent when using 'no restriction' as usually users still need to be researchers.
has super-classes
data use permissionc

non-commercial use onlyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000046

This indicates that data can be used by commercial organisations for research purposes, but not commercial purposes.
has super-classes
not for profit, non commercial use onlyc

nonprofit organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000048

has super-classes
organizationc

nonprofit research investigationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000056

has super-classes
investigationc
has agentop some nonprofit organizationc

not for profit organisation use onlyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000045

has super-classes
not for profit, non commercial use onlyc

not for profit, non commercial use onlyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000018

has super-classes
data use modifierc
has sub-classes
non-commercial use onlyc, not for profit organisation use onlyc

notes sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000634

has super-classes
document partc

nuclear RNA extractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000862

has super-classes
RNA extractc
is specified output ofop some nuclear RNA extractionc

nuclear RNA extractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000888

has super-classes
RNA extractionc

nucleic acidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_33696

has super-classes
macromoleculec
has sub-classes
deoxyribonucleic acidc, ribonucleic acidc

nucleic acid extractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001010

is equivalent to
specimenc and (is specified output ofop some nucleic acid extractionc)
has super-classes
processed specimenc
has sub-classes
DNA extractc, RNA extractc

nucleic acid extractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0666667

has super-classes
extractionc
has specified inputop some sample from organismc or organismc or cultured cell populationc
has specified outputop some nucleic acid extractc
has sub-classes
DNA extractionc, RNA extractionc

numeralc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000029

has super-classes
symbolc
has sub-classes
integer numeralc

objectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000030

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
material entityc
has sub-classes
pregnant womanc

object aggregatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000027

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
material entityc

objective specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000005

has super-classes
directive information entityc
has sub-classes
investigation objective specificationc, material maintenance objectivec, material transformation objectivec, secondary use objective specificationc, specimen collection objectivec
is in domain of
objective_achieved_byop
is in range of
achieves_planned_objectiveop

obligation directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000248

has super-classes
directive information entityc

obligation informed consent rule specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000042

has super-classes
informed consent rule specificationc

obligee rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021006

has super-classes
rolec

obligor rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021300

has super-classes
rolec

obo basic subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000018

has super-classes
ontology module subsetted by expressivityc

obsolescence reason specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000225

is equivalent to
{ failed exploratory term , placeholder removed , terms merged , term imported , term split }
has super-classes
data about an ontology partc
has members
term importedni, term splitni, terms mergedni

obsolete alcohol abuse treatment recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000096

has super-classes
Obsolete Classc

obsolete animal research investigationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000050

has super-classes
Obsolete Classc

obsolete anonymized genomic datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000114

has super-classes
Obsolete Classc

obsolete anonymized genomic samplec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000115

has super-classes
Obsolete Classc

obsolete assent processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000143

According to the Common Rule, the IRB shall determine that adequate provisions are made for soliciting the assent of the children, when in the judgment of the IRB the children are capable of providing assent.
has super-classes
Obsolete Classc

obsolete assenter rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000203

has super-classes
Obsolete Classc

obsolete assessment of participant candidate understandingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000137

has super-classes
Obsolete Classc

obsolete authorization documentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000075

has super-classes
Obsolete Classc

obsolete authorization for medical records releasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000076

has super-classes
Obsolete Classc

obsolete benefitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000077

Note that a payment is not a benefit of a study.
has super-classes
Obsolete Classc

obsolete benefitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000270

has super-classes
Obsolete Classc

Obsolete Classc back to ToC or Class ToC

IRI: http://www.geneontology.org/formats/oboInOwl#ObsoleteClass

has super-classes
thingc
has sub-classes
obsolete ICO Classes to Move to D-Actsc, obsolete ICO Classes to Move to RUBRICc, obsolete NEW_CLASSESc, obsolete US federal policy for the protection of human subjectsc, obsolete Walgreens vaccine informed consent form'c, obsolete alcohol abuse treatment recordc, obsolete animal research investigationc, obsolete anonymized genomic datac, obsolete anonymized genomic samplec, obsolete assent processc, obsolete assenter rolec, obsolete assessment of participant candidate understandingc, obsolete authorization documentc, obsolete authorization for medical records releasec, obsolete benefitc, obsolete benefitc, obsolete conditional permission directivec, obsolete confidentiality directivec, obsolete consent code primary categoryc, obsolete consent code secondary categoryc, obsolete consent power rolec, obsolete consenter rolec, obsolete consenting to be contacted for tissue researchc, obsolete consenting to the secondary use of EHRc, obsolete contact person in the event of a research-related injury to the subjectc, obsolete credential letterc, obsolete deontic rolec, obsolete dependent continuantc, obsolete description of allowed action typesc, obsolete eligibility screening personc, obsolete expiration date specification in informed consent formc, obsolete follow-up visitc, obsolete fully signed informed consent formc, obsolete general requirement for informed consentc, obsolete general research use and clinical carec, obsolete genetic research permission deontic declarationc, obsolete genetic studyc, obsolete human blood sample collection sectionc, obsolete information about participantc, obsolete information sharing processc, obsolete informed consentc, obsolete informed consent form for quantitative studyc, obsolete legal guardianc, obsolete legal namec, obsolete mental health care recordc, obsolete metastatic melanoma research investigationc, obsolete permittee deontic rolec, obsolete permittee deontic role in genetic researchc, obsolete process of providing broad consent for research with biological samplec, obsolete regulatory bodyc, obsolete research use onlyc, obsolete riskc, obsolete social act (placeholder)c, obsolete storage duration of signed informed consent formc, obsolete2_binary digital entityc, obsolete2_binary executablec, obsolete2_digital documentc, obsolete2_digital entityc, obsolete2_report figurec, obsolete2_text based digital entityc, obsolete_artifactc, obsolete_claimc, obsolete_claimant rolec, obsolete_declaration executive rolec, obsolete_declaration targetc, obsolete_deontic declarationc, obsolete_deontic document actc, obsolete_digital qualityc, obsolete_document actc, obsolete_document template creator rolec, obsolete_establishing a CRID registryc, obsolete_identifierc, obsolete_material_entityc, obsolete_obligationc, obsolete_obligator rolec, obsolete_report elementc, obsolete_report tablec, obsolete_socio-legal generically dependent continuantc, obsolete_study interpretationc, obsolete_survival curvec, obsolete_unit of measurec, obsoleted_document act targetc

obsolete communicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000192

Contributors :
Mathias Brochhausen
Matthew Diller
William R. Hogan
The term 'participant' in the definition need not refer to a human agent.
has super-classes
processc
has sub-classes
information content entity-request processc

obsolete conditional permission directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000245

has super-classes
Obsolete Classc

obsolete confidentiality directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000241

has super-classes
Obsolete Classc

obsolete consent code primary categoryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000002

has super-classes
Obsolete Classc

obsolete consent code secondary categoryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000003

has super-classes
Obsolete Classc

obsolete consent power rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000200

has super-classes
Obsolete Classc

obsolete consenter rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000206

has super-classes
Obsolete Classc

obsolete consenting to be contacted for tissue researchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000153

has super-classes
Obsolete Classc

obsolete consenting to the secondary use of EHRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000182

has super-classes
Obsolete Classc

obsolete contact person in the event of a research-related injury to the subjectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000071

has super-classes
Obsolete Classc

obsolete credential letterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000090

has super-classes
Obsolete Classc

obsolete deontic rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000166

has super-classes
Obsolete Classc

obsolete dependent continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000005

has super-classes
Obsolete Classc

obsolete description of allowed action typesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000191

has super-classes
Obsolete Classc

obsolete eligibility screening personc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000152

has super-classes
Obsolete Classc

obsolete expiration date specification in informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000026

has super-classes
Obsolete Classc

obsolete follow-up visitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000094

has super-classes
Obsolete Classc

obsolete fully signed informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000017

has super-classes
Obsolete Classc

obsolete general requirement for informed consentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000068

has super-classes
Obsolete Classc

obsolete general research use and clinical carec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000005

This term was made obsolete as per https://github.com/EBISPOT/DUO/issues/45
has super-classes
Obsolete Classc

obsolete genetic research permission deontic declarationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000168

will add an equivalent class axiom 'has specified output' some 'permittee deontic role in genetic research'
has super-classes
Obsolete Classc

obsolete genetic studyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000055

has super-classes
Obsolete Classc

obsolete human blood sample collection sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000028

has super-classes
Obsolete Classc

obsolete ICO Classes to Move to D-Actsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ico.owl#Belongs_in_D-Acts

This is a dummy class to be deprecated after it has fulfilled its organization purposes
has super-classes
Obsolete Classc

obsolete ICO Classes to Move to RUBRICc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ico.owl#Belongs_in_CRO

This is a dummy class to be deprecated after it has fulfilled its organization purposes
has super-classes
Obsolete Classc

obsolete information about participantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000261

has super-classes
Obsolete Classc

obsolete information sharing processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000102

has super-classes
Obsolete Classc

obsolete informed consentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000155

has super-classes
Obsolete Classc

obsolete informed consent form for quantitative studyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000063

has super-classes
Obsolete Classc

obsolete legal guardianc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000082

has super-classes
Obsolete Classc

obsolete legal namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000106

has super-classes
Obsolete Classc

obsolete mental health care recordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000097

has super-classes
Obsolete Classc

obsolete metastatic melanoma research investigationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000052

has super-classes
Obsolete Classc

obsolete NEW_CLASSESc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000184

has super-classes
Obsolete Classc

obsolete permittee deontic rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000176

Note: this term wll be transferred to d-acts. - CTSOG ontology workshop 2018 Little Rock
has super-classes
Obsolete Classc

obsolete permittee deontic role in genetic researchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000167

Note: this term wll be transferred to d-acts. - CTSOG ontology workshop 2018 Little Rock
has super-classes
Obsolete Classc

obsolete process of providing broad consent for research with biological samplec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000180

has super-classes
Obsolete Classc

obsolete regulatory bodyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000232

has super-classes
Obsolete Classc

obsolete research use onlyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000014

Deprecated as GRU-CC was split into GRU and CC, so this is not applicable anymore as a qualifier of GRU-CC
has super-classes
Obsolete Classc

obsolete riskc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000271

has super-classes
Obsolete Classc

obsolete role in human social processesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000024

Previous definition: A role played by an entity in human social processes.
has super-classes
rolec
has sub-classes
employer rolec, organization social rolec

obsolete social act (placeholder)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000194

has super-classes
Obsolete Classc

obsolete storage duration of signed informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000119

has super-classes
Obsolete Classc

obsolete US federal policy for the protection of human subjectsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000122

has super-classes
Obsolete Classc

obsolete Walgreens vaccine informed consent form'c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000139

has super-classes
Obsolete Classc

obsolete2_binary digital entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000019

has super-classes
Obsolete Classc

obsolete2_binary executablec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000093

has super-classes
Obsolete Classc

obsolete2_digital documentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000105

has super-classes
Obsolete Classc

obsolete2_digital entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000012

has super-classes
Obsolete Classc

obsolete2_report figurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000059

has super-classes
Obsolete Classc

obsolete2_text based digital entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000047

has super-classes
Obsolete Classc

obsolete_artifactc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000008

has super-classes
Obsolete Classc

obsolete_claimc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021000

has super-classes
Obsolete Classc

obsolete_claimant rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021017

has super-classes
Obsolete Classc

obsolete_declaration executive rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021014

has super-classes
Obsolete Classc

obsolete_declaration targetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021020

has super-classes
Obsolete Classc

obsolete_deontic declarationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021005

has super-classes
Obsolete Classc

obsolete_deontic document actc back to ToC or Class ToC

IRI: http://purl.obolibary.org/obo/IAO_0021001

has super-classes
Obsolete Classc

obsolete_digital qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000141

has super-classes
Obsolete Classc

obsolete_document actc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021002

has super-classes
Obsolete Classc

obsolete_document template creator rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021015

not that the "template" does not need to be a template at all. It can be a document that is getting stamped and signed and by these acts creating some socio-legal generically dependent continuants.
has super-classes
Obsolete Classc

obsolete_establishing a CRID registryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000576

has super-classes
Obsolete Classc

obsolete_identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000128

has super-classes
Obsolete Classc

obsolete_material_entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000018

has super-classes
Obsolete Classc

obsolete_obligationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021010

has super-classes
Obsolete Classc

obsolete_obligator rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021018

has super-classes
Obsolete Classc

obsolete_report elementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000091

has super-classes
Obsolete Classc

obsolete_report tablec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000097

has super-classes
Obsolete Classc

obsolete_socio-legal generically dependent continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021004

has super-classes
Obsolete Classc

obsolete_study interpretationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000035

has super-classes
Obsolete Classc

obsolete_survival curvec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000182

has super-classes
Obsolete Classc

obsolete_unit of measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000024

has super-classes
Obsolete Classc

obsoleted_document act targetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021030

has super-classes
Obsolete Classc

occurrentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000003

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
entityc
has sub-classes
processc, process boundaryc, spatiotemporal regionc, temporal regionc
is in domain of
has participantop, occurs inop
is in range of
participates inop
is disjoint with
continuantc

omentumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0003688

has super-classes
material anatomical entityc

omentum specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002548

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some omentumc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

one dimensional cartesian spatial coordinate datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000401

has super-classes
cartesian spatial coordinate datumc
denotesop some zero-dimensional spatial regionc and (part ofop some one-dimensional spatial regionc)
has x coordinate valuedp exactly 1

one-dimensional continuant fiat boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000142

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
continuant fiat boundaryc
is disjoint with
two-dimensional continuant fiat boundaryc, zero-dimensional continuant fiat boundaryc

one-dimensional spatial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000026

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
spatial regionc
is disjoint with
three-dimensional spatial regionc

one-dimensional temporal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000038

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
temporal regionc
has sub-classes
investigation periodc, participation durationc
is disjoint with
zero-dimensional temporal regionc

ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000000

has super-classes
data about an ontology partc
has sub-classes
base ontology modulec, bridge ontology modulec, editors ontology modulec, generated ontology modulec, main release ontology modulec, reasoned ontology modulec, subset ontology modulec

ontology module subsetted by expressivityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000017

has super-classes
subset ontology modulec
has sub-classes
obo basic subset ontology modulec, ontology module subsetted by OWL profilec

ontology module subsetted by OWL profilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000019

has super-classes
ontology module subsetted by expressivityc
has sub-classes
EL++ ontology modulec

Opisthokontac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33154

has super-classes
Eukaryotac
has sub-classes
Metazoac

option to checkc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000010

has super-classes
user input directivec

optional informed consent elementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000012

has super-classes
document partc

oral lavage fluidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003667

is equivalent to
lavage fluid specimenc and (is specified output ofop some lavagec) and (is specified output ofop some specimen collection processc and (has specified inputop some mouthc))
has super-classes
lavage fluid specimenc

oral swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002607

is equivalent to
specimen from organismc and (is specified output ofop some collecting specimen with swabc) and (is specified output ofop some specimen collection processc and (has specified inputop some mouthc))
has super-classes
specimen from organismc
swab specimenc
has sub-classes
cheek swab specimenc, tongue swab specimenc

organ harvestingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_1110046

has super-classes
material component separationc

organ sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100066

has super-classes
processed materialc
is specified output ofop some histological sample preparationc or collecting specimen from organismc
derives fromop some material anatomical entityc

organellar RNA extractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000899

is equivalent to
RNA extractc and (is specified output ofop some organellar RNA extractionc)
has super-classes
RNA extractc

organellar RNA extractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000849

has super-classes
RNA extractionc

organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100026

is equivalent to
Virusesc or Bacteriac or Archaeac or Eukaryotac
has super-classes
material entityc
has sub-classes
Archaeac, Bacteriac, Eukaryotac, Virusesc

organism substancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000463

has super-classes
material anatomical entityc
has sub-classes
amniotic fluidc, bodily fluidc, digestive system secreted substancec, fecesc, respiratory system fluid/secretionc, salivac, semenc, urinec, vitreous humorc

organismal qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001995

has super-classes
physical object qualityc
has sub-classes
viabilityc

organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000245

has super-classes
agentc
has sub-classes
biobank organizationc, departmentc, governmentc, governmental organizationc, grant agencyc, hospital organizationc, informed consent regulatory bodyc, institutional review boardc, nonprofit organizationc, profit organizationc, regulatory agencyc

organization health care rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000027

Previous definition: An organization social role played by an organization in health care processes.
has super-classes
organization social rolec
has sub-classes
health care provider organization rolec

organization social rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000025

Defined class that we will ultimately move to an application ontology. We are leaving here for now until we determine which application ontology: it is likely going to be an ontology that does not currently (2012-06-05) exist. Ditto for its current descendants.
has super-classes
obsolete role in human social processesc
has sub-classes
organization health care rolec

organization-specified contact rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000188

has super-classes
contact person rolec

oropharyngeal swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002608

is equivalent to
upper respiratory tract specimenc and (is specified output ofop some collecting specimen with swabc) and (is specified output ofop some specimen collection processc and (has specified inputop some oropharynxc))
has super-classes
swab specimenc
upper respiratory tract specimenc

oropharynxc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001729

has super-classes
material anatomical entityc

ovaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000992

has super-classes
material anatomical entityc

ovary specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002549

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some ovaryc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

owner role directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000427

has super-classes
directive information entityc

ownership statisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000428

has super-classes
stasisc

pancreasc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001264

has super-classes
material anatomical entityc

pancreas specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002527

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some pancreasc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

paraffin specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000950

is equivalent to
specimenc and (is specified output ofop some paraffin storagec and (has specified inputop some has roleop some specimen rolec))
has super-classes
specimen with known storage statec
has sub-classes
FFPE specimenc

paraffin storagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000977

need to specify paraffin or wax is one of specified input of the process
has super-classes
storagec
has specified inputop some organismc or material anatomical entityc
achieves_planned_objectiveop some material maintenance objectivec

parental informed consent processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000157

has super-classes
informed consent processc

part of informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000007

has super-classes
document partc

partially filled informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000024

has super-classes
informed consent formc

participant candidate making voluntary decision of acceptancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000136

has super-classes
processc

participant under investigation rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000097

has super-classes
rolec
realized inop only study design executionc

participation durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000088

has super-classes
one-dimensional temporal regionc

patentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000313

has super-classes
documentc

patientc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000422

is equivalent to
Homo sapiensc and (bearer ofop some patient rolec)
has super-classes
Homo sapiensc

patient rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000093

has super-classes
rolec
characteristic ofop some Homo sapiensc

patient role directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000317

has super-classes
role directivec

patients sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000635

has super-classes
document partc
has partop some patients textual entityc

patients textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000636

has super-classes
textual entityc

peptidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_16670

has super-classes
macromoleculec
has sub-classes
proteinc

pericardial fluidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002409

has super-classes
bodily fluidc

pericardial fluid specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002506

is equivalent to
bodily fluid specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some pericardial fluidc)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
bodily fluid specimenc

peripheral blood mononuclear cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_2000001

has super-classes
mononuclear cellc

peripheral blood mononuclear cell specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003415

is equivalent to
blood specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some peripheral blood mononuclear cellc)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
blood specimenc

peritoneal fluidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001268

has super-classes
bodily fluidc

peritoneal fluid specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002514

is equivalent to
bodily fluid specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some peritoneal fluidc)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
bodily fluid specimenc

permission condition directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000327

(1) A 'designated consent condition' defines or delimits the scope, boundaries, requirements, attributes, antecendents, or limitations the 'designated action' which may be permitted. As such, it is specifically tied to permissions to avoid complex nested impertives as much as possible. The central question to ask is: 'what does permission to undertake this action depend on?' (2) Our intent is to focus on conditionals related to 'obtaining permission' rather than all possible conditionals.
has super-classes
directive information entityc
has sub-classes
permission preconditionc, permission requirement directivec, permission restriction directivec, permission sub-directivec

permission directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000244

(1) There is some ambiguity regarding process repition. This distinction may point to the central question of whether or not we permit 'universals' or . Take the following example: In the case of 'permission to destroy excess tissue' the instance of a 'process of destruction' is permitted only once. However, in the case of 'pemission to share data' this process may be performed multiple times.
has super-classes
directive information entityc
has sub-classes
assent directivec, consent directivec

permission informed consent rule specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000043

has super-classes
informed consent rule specificationc

permission preconditionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000356

(1) 'antecedent' (2) may need to specific 'post-cendents' also.
has super-classes
permission condition directivec

permission purpose directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000328

(1) We refer to 'designated purpose' as the specific end, outcome, or target of some designated action. We note that this necessarily involves the notion of 'intentionality.' Because this may be regarded as problematic in a realist ontology, please tread with caution.
has super-classes
permission restriction directivec
has sub-classes
designated administrative purposec, designated commercial purposec, designated diagnostic purposec, designated educational purposec, designated evaluation purposec, designated healthcare operation purposec, designated non-commercial purposec, designated recruitment purposec, designated research purposec, designated return of results purposec, designated therapeutic purposec, designated unspecified purposec

permission requirement directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000364

(1) NOTE: this is an imperitive - it is not strictly part of a permission but is inextricably tied to it. (2) these are obligations that are dependent on a permission (conditioned on a permission) (3) MUST BE FULLFILLED (4) allowability is necessarily dependent on this being fulfilled
has super-classes
permission condition directivec
has sub-classes
possibility of withdraw directivec, sensitive information protection directivec

permission restriction directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000357

(1) Restrictions narrow the scope of the 'designated action'. They operate on the 'allowability' conditionally. (2) "Allowable IF NOT <'designated restriction'>" (3) Alternatively: 'A LIMIT ON THE SCOPE OF THE ACTION' (4) up until the point of. (5) RESTRAINNING
has super-classes
permission condition directivec
has sub-classes
jurisdiction restriction directivec, permission purpose directivec, permitted actor restriction directivec, temporal restriction directivec

permission rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000199

has super-classes
deontic rolec

permission sub-directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000365

(1) This permission is dependent on another permission (2) a good example of this are data use agreements that must be signed in addition to an informed consent form to allow for PHI data sharingor disclosure.
has super-classes
permission condition directivec

permission temporal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000186

has super-classes
temporal regionc

permission transfer directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000294

has super-classes
directive information entityc

permitted actor restriction directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000359

has super-classes
permission restriction directivec

photographc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000185

has super-classes
imagec

photographic printc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000186

is equivalent to
material entityc and (bearer ofop some concretizesop some photographc)
has super-classes
material information bearerc

physical object qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001241

has super-classes
qualityc
has sub-classes
morphologyc, organismal qualityc, physical qualityc

physical qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001018

has super-classes
physical object qualityc
has sub-classes
massc, temperaturec

pituitary glandc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000007

has super-classes
material anatomical entityc

pituitary gland specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002529

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some pituitary glandc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

placentac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001987

has super-classes
material anatomical entityc

placenta specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002513

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some placentac))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc
has sub-classes
chorionic villus specimenc

placental bloodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_8470000

has super-classes
bloodc

placental blood specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003380

is equivalent to
blood specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some placental bloodc)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
blood specimenc

plan specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000104

2/3/2009 Comment from OBI review. Action specification not well enough specified. Conditional specification not well enough specified. Question whether all plan specifications have objective specifications. Request that IAO either clarify these or change definitions not to use them
has super-classes
directive information entityc
has partop some objective specificationc
has partop some action specificationc
has sub-classes
Postal delivery routec, algorithmc, planned duration of study subject participationc, programming languagec, protocolc, softwarec, study designc

planned duration of study subject participationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000127

has super-classes
plan specificationc

planned processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000011

is equivalent to
realizesop some concretizesop some plan specificationc
has super-classes
processc
has sub-classes
act of anonymizingc, act of archiving informed consentc, act of canceling a permissionc, act of contact for future researchc, act of data sharingc, act of data usec, act of declining to provide consentc, act of filling out formc, act of genetic testingc, act of regulatory supervisionc, act of sellingc, act of storingc, approving an informed consent formc, archiving signed electronic informed consent formc, archiving signed informed consent formc, assigning a centrally registered identifierc, associating information with a centrally registered identifier in its registryc, biological sample collectingc, broad consent processc, clinical laboratory testc, consenting to not to be informed about incidental findingc, countingc, data item extraction from journal articlec, data transformationc, database extract, transform, and load processc, dataset creatingc, designing an informed consent formc, documentingc, drawing a conclusion based on datac, education processc, eligibility screening processc, explaining to participant candidate about the study participating informationc, explaining to participant candidate in informed consent processc, filling informed consent formc, filling questionnairec, health care processc, informed consent processc, investigationc, legally effective consentingc, looking up a centrally registered identifierc, material maintenancec, material processingc, postmortem donation of biological specimenc, publishing processc, secondary usec, social actc, software developmentc, specimen collection processc, study design executionc, subject withdrawal with sample stored for limited timec, subject withdrawal with sample stored for unlimited timec, treatmentc, validating an informed consent formc, waste managementc, withdrawing participation in studyc
is in domain of
achieves_planned_objectiveop, has specified inputop, has specified outputop
is in range of
is specified input ofop, is specified output ofop, objective_achieved_byop

planningc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000339

has super-classes
processc

platelet-poor plasma specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002774

has super-classes
blood plasma specimenc

pleural fluidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001087

has super-classes
bodily fluidc

pleural fluid specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002515

is equivalent to
bodily fluid specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some pleural fluidc)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
bodily fluid specimenc

polyA depleted RNA extractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002573

is equivalent to
RNA extractc and (is specified output ofop some RNA extraction with polyA depletionc)
has super-classes
RNA extractc

polyA RNA extractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000869

has super-classes
RNA extractc
is specified output ofop some polyA RNA extractionc

polyA RNA extractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000848

has super-classes
RNA extractionc

pool of specimensc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302716

is equivalent to
specimenc and (is specified output ofop some material combinationc and (has specified inputop only specimenc))
has super-classes
processed specimenc

populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000181

has super-classes
material entityc
has sub-classes
human populationc

population origins or ancestry research onlyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000011

has super-classes
data use permissionc

population origins or ancestry research prohibitedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_00000044

has super-classes
data use modifierc

population researchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000032

Should be paired with the an ontology term representing this population (e.g., xxx).
has super-classes
investigationc

portioning objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000678

has super-classes
material separation objectivec

possibility of withdraw directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000366

(1) typically from 'study participation.'
has super-classes
permission requirement directivec

post mortem specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000902

is equivalent to
specimen with pre- or post-mortem statusc and (is specified output ofop some specimen collection processc and (has specified inputop some organismc and (has qualityop some deadc)))
has super-classes
specimen with pre- or post-mortem statusc

postal addressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000422

has super-classes
textual entityc
is aboutop some geographic locationc

postal codec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000646

has super-classes
identifierc
has sub-classes
zone improvement plan codec

Postal delivery routec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000647

has super-classes
plan specificationc

postmortem donation of biological specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000145

has super-classes
planned processc

pre-mortem specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000873

is equivalent to
specimen with pre- or post-mortem statusc and (is specified output ofop some specimen collection processc and (has specified inputop some organismc and (has qualityop some alivec)))
has super-classes
specimen with pre- or post-mortem statusc

pre-publication history sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000637

has super-classes
document partc
has partop some pre-publication history textual entityc

pre-publication history textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000638

has super-classes
textual entityc

pregnant womanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000288

has super-classes
objectc

principal investigator rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000103

has super-classes
responsible party rolec

prisoner rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000289

has super-classes
rolec

processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000015

is defined by
http://purl.obolibrary.org/obo/bfo.owl
An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
has super-classes
occurrentc
has sub-classes
Incarcerationc, act of abusec, authenticationc, bodily processc, female pregnancyc, historyc, obsolete communicationc, participant candidate making voluntary decision of acceptancec, planned processc, planningc, process profilec, stasisc, study terminationc
is in domain of
realizesop
is in range of
is duration ofop, realized inop
is disjoint with
temporal regionc

process boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000035

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
occurrentc
is disjoint with
temporal regionc

process profilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000144

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
processc
is disjoint with
historyc

processed materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000047

is equivalent to
material entityc and (is specified output ofop some material processingc)
has super-classes
material entityc
has sub-classes
cell freezing mediumc, culture mediumc, cultured cell populationc, devicec, experimentally modified cell in vitroc, molecular-labeled materialc, organ sectionc, processed specimenc, reagentc

processed specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000953

is equivalent to
specimenc and (processed materialc and specimenc)
has super-classes
processed materialc
specimenc
has sub-classes
blood plasma specimenc, fixed tissue specimenc, labeled specimenc, lavage fluid specimenc, lymph node cell specimenc, nucleic acid extractc, pool of specimensc, splenocyte specimenc, whole mount tissuec

profit organizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000049

has super-classes
organizationc

programming languagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000025

has super-classes
plan specificationc

project duration specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000037

has super-classes
temporal region identifierc

project end date specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000039

has super-classes
temporal region identifierc

project specific restrictionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000027

has super-classes
data use modifierc

project starting date specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000038

has super-classes
temporal region identifierc

prostate glandc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002367

has super-classes
material anatomical entityc

prostate gland specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002518

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some prostate glandc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

protected health information entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000103

has super-classes
health information entityc
has sub-classes
individually identifiable health information entityc, limited data setc

protection directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000299

has super-classes
trigger condition directivec

proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PR_000000001

has super-classes
peptidec
has sub-classes
albuminc

protocolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000272

has super-classes
plan specificationc
has sub-classes
study protocolc

publicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000311

Revisit the term in Octorber 2020. Improve the defintion.
is equivalent to
documentc and (is specified output ofop only publishing processc)
has super-classes
documentc
has sub-classes
journal articlec, publication about an investigationc

publication about an investigationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000312

has super-classes
publicationc
is aboutop some investigationc

publication moratoriumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000024

This should be coupled with a date specified as ISO8601
has super-classes
data use modifierc

publication requiredc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000019

has super-classes
data use modifierc

publishing processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000444

has super-classes
planned processc

qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000019

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
specifically dependent continuantc
has sub-classes
information carrierc, physical object qualityc, relational qualityc
is in range of
has qualityop, is quality measurement ofop
is disjoint with
realizable entityc

question textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000141

has super-classes
textual entityc

questionnairec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001000

has super-classes
documentc
has sub-classes
eligibility questionnairec, filled questionnairec

radiation treatment exclusion criteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002425

has super-classes
exclusion criterionc

radiation treatment within the recent past exclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002427

has super-classes
exclusion criterionc

reactant rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003610

has super-classes
rolec
has sub-classes
reagent rolec

reagentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001879

(copied from ReO) Reagents are distinguished from devices/instruments that also serve as facilitators in scientific techniques by the fact that reagents are chemical or biological in nature and necessarily participate in or have parts that participate in some chemical interaction or reaction during their intended participation in some technique. By contrast, devices do not participate in a chemical reaction/interaction during the technique. Reagents are distinguished from study subjects/evaluants in that study subjects and evaluants are that about which conclusions are drawn and knowledge is sought in an investigation - while reagents, by definition, are not. It should be noted, however, that reagent and study subject/evaluant roles can be borne by instances of the same type of material entity - but a given instance can only realize one of these roles in the execution of a given assay. For example, taq polymerase can bear a reagent role or an evaluant role. In a DNA sequencing assay aimed at generating sequence data about some plasmid, the reagent role of the taq polymerase is realized. In an assay to evaluate the quality of the taq polymerase itself, the evaluant/study subject role of the taq is realized, but not the reagent role since the taq is the subject about which data is generated. In regard to the statement that reagents are 'distinct' from the specified outputs of a technique: note that a reagent may be incorporated into a material output of a technique, as long as the IDENTITY of this output is distinct from that of the bearer of the reagent role. For example, dNTPs input into a PCR are reagents that become part of the material output of this technique, but this output has a new identity (ie that of a 'nucleic acid molecule') that is distinct from the identity of the dNTPs that comprise it. Similarly, a biotin molecule input into a cell labeling technique are reagents that become part of the specified output, but the identity of the output is that of some modified cell specimen which shares identity with the input unmodified cell specimen, and not with the biotin label. Thus, we see that an important criteria of 'reagent-ness' is that it is a facilitator, and not the primary focus of an investigation or material processing technique (ie not the specified subject/evaluant about which knowledge is sought, or the specified output material of the technique).
is equivalent to
material entityc and (has roleop some reagent rolec)
has super-classes
processed materialc
is specified output ofop some material processingc
has sub-classes
molecular labelc

reagent rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000086

(copied from ReO) Reagents are distinguished from instruments or devices that also participate in scientific techniques by the fact that reagents are chemical or biological in nature and necessarily participate in or have parts that participate in some chemical interaction or reaction during their intended participation in some technique. By contrast, instruments do not participate in a chemical reaction/interaction during the technique. Reagents are distinguished from study subjects/evaluants in that study subjects and evaluants are that about which conclusions are drawn and knowledge is sought in an investigation - while reagents, by definition, are not. It should be noted, however, that reagent and study subject/evaluant roles can be borne by instances of the same type of material entity - but a given instance will realize only one of these roles in the execution of a given assay or technique. For example, taq polymerase can bear a reagent role or an evaluant role. In a DNA sequencing assay aimed at generating sequence data about some plasmid, the reagent role of the taq polymerase is realized. In an assay to evaluate the quality of the taq polymerase itself, the evaluant/study subject role of the taq is realized, but not the reagent role since the taq is the subject about which data is generated. In regard to the statement that reagents are 'distinct' from the specified outputs of a technique, note that a reagent may be incorporated into a material output of a technique, as long as the IDENTITY of this output is distinct from that of the bearer of the reagent role. For example, dNTPs input into a PCR are reagents that become part of the material output of this technique, but this output has a new identity (ie that of a 'nucleic acid molecule') that is distinct from the identity of the dNTPs that comprise it. Similarly, a biotin molecule input into a cell labeling technique are reagents that become part of the specified output, but the identity of the output is that of some modified cell specimen which shares identity with the input unmodified cell specimen, and not with the biotin label. Thus, we see that an important criteria of 'reagent-ness' is that it is a facilitator, and not the primary focus of an investigation or material processing technique (ie not the specified subject/evaluant about which knowledge is sought, or the specified output material of the technique).
has super-classes
reactant rolec
has sub-classes
molecular label rolec

realizable entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000017

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
specifically dependent continuantc
has sub-classes
dispositionc, rolec
is in domain of
realized inop
is in range of
realizesop
is disjoint with
qualityc

reasoned ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000013

has super-classes
ontology modulec

recontact method directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000009

has super-classes
directive information entityc

rectal swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002609

is equivalent to
digestive tract specimenc and (is specified output ofop some collecting specimen with swabc) and (is specified output ofop some specimen collection processc and (has specified inputop some rectumc))
has super-classes
swab specimenc
digestive tract specimenc

rectumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001052

has super-classes
material anatomical entityc

references sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000320

has super-classes
document partc
has partop some citationc

regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/SO_0000001

has super-classes
generically dependent continuantc

regulator rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000014

has super-classes
regulatory rolec

regulatory agencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000450

is equivalent to
organizationc and (has roleop some regulator rolec)
has super-classes
organizationc

regulatory documentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000233

has super-classes
documentc
has sub-classes
human subject research regulatory documentc, informed consent regulatory documentc

regulatory oversight rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000286

has super-classes
rolec

regulatory oversight role directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000318

has super-classes
role directivec

regulatory rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000017

has super-classes
rolec
has sub-classes
regulator rolec

related work sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000639

has super-classes
document partc
has partop some related work textual entityc

related work textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000640

has super-classes
textual entityc

relational qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000145

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
qualityc

renal medullac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000362

has super-classes
multi-tissue structurec

renal medulla specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002521

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some renal medullac))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

reportc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000088

has super-classes
documentc
has sub-classes
journal articlec

repository of documentsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000118

has super-classes
sitec

required informed consent elementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000011

has super-classes
document partc

requirements sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000641

has super-classes
document partc
has partop some requirements textual entityc

requirements textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000642

has super-classes
textual entityc

research assistant rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000080

has super-classes
rolec

research controlc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000036

has super-classes
investigationc

research method directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000273

has super-classes
directive information entityc

research participants sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000703

has super-classes
document partc

research settings sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000705

has super-classes
document partc

research specific restrictionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000012

has super-classes
data use modifierc
is restricted toop some Topicc

research subject rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000073

has super-classes
rolec

research-related injuryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000100

has super-classes
injuryc

residual clinical biospecimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000429

has super-classes
material entityc

respiratory systemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001004

has super-classes
material anatomical entityc

respiratory system fluid/secretionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0006538

has super-classes
organism substancec
has sub-classes
sputumc

respiratory system specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000005

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some respiratory systemc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc
has sub-classes
lower respiratory tract specimenc, upper respiratory tract specimenc

responsible party rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000102

has super-classes
investigation agent rolec
has sub-classes
principal investigator rolec

restriction directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000246

has super-classes
directive information entityc

results sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000318

has super-classes
document partc
is aboutop some study design executionc
has sub-classes
additional results sectionc

reticulocytec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000558

has super-classes
cellc

reticulocyte specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000017

is equivalent to
cell specimenc and (is specified output ofop some collecting specimen from organismc) and (is specified output ofop some specimen collection processc and (has specified inputop some reticulocytec))
has super-classes
cell specimenc

return to database or resourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000029

has super-classes
data use modifierc

review board approval numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000111

has super-classes
symbolc
has sub-classes
institutional review board approval numberc
is in range of
obsolete is associated with review board approval numberop

ribonucleic acidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_33697

has super-classes
nucleic acidc

ribosomal RNA-depleted RNA extractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002627

has super-classes
RNA extractc

riskc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000078

has super-classes
dispositionc
has sub-classes
minimal riskc

RNA extractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000880

is equivalent to
nucleic acid extractc and (is specified output ofop some RNA extractionc) and (has grainop some ribonucleic acidc)
has super-classes
nucleic acid extractc
has sub-classes
cytoplasmic RNA extractc, nuclear RNA extractc, organellar RNA extractc, polyA RNA extractc, polyA depleted RNA extractc, ribosomal RNA-depleted RNA extractc, total RNA extractc

RNA extractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0666666

has super-classes
nucleic acid extractionc
has specified outputop some RNA extractc
has sub-classes
RNA extraction with polyA depletionc, cytoplasmic RNA extractionc, nuclear RNA extractionc, organellar RNA extractionc, polyA RNA extractionc, total RNA extractionc

RNA extraction with polyA depletionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002574

Date :
11T15:01:14Z/05/2018
has super-classes
RNA extractionc

rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000023

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
realizable entityc
has sub-classes
abused person rolec, assenter rolec, author rolec, candidate eligible for study rolec, candidate ineligible for study rolec, committee member rolec, consenter rolec, contact person rolec, covered entity rolec, credential rolec, data recipient rolec, deontic declaration performer rolec, deontic rolec, document act performer rolec, document act template creator rolec, eligibility of candidate participationc, eligibility screening rolec, excess material rolec, hospital governing body rolec, investigation agent rolec, investigator rolec, legal guardian rolec, legal person rolec, legal representative rolec, legally effective consented participant rolec, material to be added rolec, minor rolec, obligee rolec, obligor rolec, obsolete role in human social processesc, participant under investigation rolec, patient rolec, prisoner rolec, reactant rolec, regulatory oversight rolec, regulatory rolec, research assistant rolec, research subject rolec, specimen rolec, target of material addition rolec, vulnerable individual rolec, witness rolec
is in range of
has roleop
is disjoint with
dispositionc

role directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000316

is equivalent to
prescribesop some rolec
has super-classes
directive information entityc
has sub-classes
investigator role directivec, legally authorized representative role directivec, patient role directivec, regulatory oversight role directivec

rulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000055

has super-classes
conditional specificationc
has sub-classes
broad consent rulec, conditional informed consent rulec, informed consent rulec

running titlec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000329

has super-classes
document titlec

salivac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001836

has super-classes
organism substancec

saliva specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002507

is equivalent to
bodily fluid specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some salivac)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
bodily fluid specimenc

sample from organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000671

is equivalent to
specimen from organismc and (has roleop some material sample rolec)
has super-classes
material samplec
specimen from organismc

scalar measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000032

has super-classes
measurement datumc
has measurement unit labelop min 1
has measurement valuedp min 1
has sub-classes
length measurement datumc, mass measurement datumc, time measurement datumc
is in domain of
has measurement valuedp

scatter plotc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000184

has super-classes
graphc

secondary usec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000181

has super-classes
planned processc

secondary use objective specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000315

has super-classes
objective specificationc

semenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001968

has super-classes
organism substancec

semen specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000008

is equivalent to
bodily fluid specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some semenc)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
bodily fluid specimenc

sensitive information protection directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000418

(1) This definition is left purposefully broad to cover a wide range of use cases including processes or methods.
has super-classes
permission requirement directivec

separation into different composition objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000681

has super-classes
material separation objectivec

serial numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000131

has super-classes
symbolc

setting datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000140

has super-classes
data itemc

sex inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002561

has super-classes
inclusion criterionc

sigmoid colonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001159

has super-classes
material anatomical entityc

sigmoid colon specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002550

is equivalent to
digestive tract specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some sigmoid colonc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
digestive tract specimenc

signaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000222

has super-classes
information content entityc

signature sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000019

has super-classes
document partc
has sub-classes
human subject signature section in informed consent formc, investigator signature section in informed consent formc

signed informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000015

is equivalent to
informed consent formc and (has partop some signaturec)
has super-classes
informed consent formc

signing an informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000005

Signing here does not mean that we have to sign with a pen. It may happen in terms of signing a piece of a paper or an electronic form.
has super-classes
social actc

single cell specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002127

has super-classes
cell specimenc

single layer subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000009

has super-classes
subset ontology modulec

sitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000029

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
immaterial entityc
has sub-classes
geographic locationc, jurisdictionc, repository of documentsc
is disjoint with
spatial regionc

skeletal muscle tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001134

has super-classes
tissuec

skeletal muscle tissue specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002519

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some skeletal muscle tissuec)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

skin of bodyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002097

has super-classes
material anatomical entityc

skin of body specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002526

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some skin of bodyc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc
has sub-classes
suprapubic skin specimenc

social actc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021003

has super-classes
planned processc
has sub-classes
act of approvingc, act of authorizingc, act of communicatingc, act of communicating assentc, act of informingc, act of waivingc, deontic declarationc, signing an informed consent formc, standing declarationc

softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000010

has super-classes
plan specificationc
has sub-classes
software applicationc, software libraryc, software methodc, software modulec, software scriptc

software applicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000594

has super-classes
softwarec

software developmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000008

is equivalent to
planned processc and (has specified outputop some softwarec or source code modulec)
has super-classes
planned processc
has sub-classes
compiling softwarec

software interpreterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000065

has super-classes
algorithmc

software libraryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000593

has super-classes
softwarec

software methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000591

has super-classes
softwarec

software modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000592

has super-classes
softwarec

software scriptc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000595

has super-classes
softwarec

source code modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000096

has super-classes
directive information entityc

source code repositoryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000522

Refers to the stuff that lives on GitHub, not to GitHub or the git software on which it is based
has super-classes
documentc
has partop some source code modulec
has partop some data itemc and (is aboutop some source code modulec)

spatial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000006

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
immaterial entityc
has sub-classes
one-dimensional spatial regionc, three-dimensional spatial regionc, two-dimensional spatial regionc, zero-dimensional spatial regionc
is disjoint with
sitec, continuant fiat boundaryc

spatiotemporal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000011

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
occurrentc
is disjoint with
temporal regionc

species subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000012

has super-classes
subset ontology modulec

specifically dependent continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000020

is defined by
http://purl.obolibrary.org/obo/bfo.owl
A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
has super-classes
continuantc
has sub-classes
qualityc, realizable entityc
is in domain of
concretizesop
is in range of
bearer ofop, is concretized asop
is disjoint with
independent continuantc, generically dependent continuantc

specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100051

is equivalent to
material entityc and (has roleop some specimen rolec)
has super-classes
material entityc
has sub-classes
individual organism specimenc, material samplec, processed specimenc, specimen from organismc, specimen with known storage statec, swab specimenc, whole organism preparationc

specimen collection objectivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000684

has super-classes
objective specificationc

specimen collection processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000659

is equivalent to
planned processc and (achieves_planned_objectiveop some specimen collection objectivec)
has super-classes
planned processc
has specified inputop some material entityc
has specified outputop some specimenc
has sub-classes
aspiration specimen collectionc, collecting specimen from organismc, collecting specimen with swabc, histological sample preparationc

specimen from organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001479

is equivalent to
specimenc and (is specified output ofop some specimen collection processc and (has specified inputop some organismc or material anatomical entityc or anatomical clusterc))
has super-classes
specimenc
has sub-classes
adipose tissue specimenc, adrenal gland specimenc, aorta specimenc, atrial appendage specimenc, bodily fluid specimenc, bone marrow specimenc, brain specimenc, breast specimenc, cell specimenc, cloacal specimenc, coronary artery specimenc, cortex of kidney specimenc, digestive tract specimenc, eye specimenc, feces specimenc, hair specimenc, heart specimenc, lavage fluid specimenc, liver specimenc, minor salivary gland specimenc, omentum specimenc, oral swab specimenc, ovary specimenc, pancreas specimenc, pituitary gland specimenc, placenta specimenc, prostate gland specimenc, renal medulla specimenc, respiratory system specimenc, sample from organismc, skeletal muscle tissue specimenc, skin of body specimenc, specimen with pre- or post-mortem statusc, spleen specimenc, testis specimenc, throat specimenc, thyroid gland specimenc, tibial artery specimenc, tibial nerve specimenc, urethra specimenc, urinary bladder specimenc, uterus specimenc, vagina specimenc

specimen rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000112

has super-classes
rolec
characteristic ofop some material entityc and (is specified output ofop some specimen collection processc)
has sub-classes
material sample rolec

specimen with known storage statec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001472

is equivalent to
specimenc and (fresh specimenc or (specimenc and (is specified output ofop some storagec)))
has super-classes
specimenc
has sub-classes
agar stab specimenc, fresh specimenc, frozen specimenc, lyophilized specimenc, paraffin specimenc

specimen with pre- or post-mortem statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001506

is equivalent to
specimenc and (is specified output ofop some specimen collection processc and (has specified inputop some organismc and (has qualityop some alivec or deadc)))
has super-classes
specimen from organismc
has sub-classes
post mortem specimenc, pre-mortem specimenc

spleenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002106

has super-classes
material anatomical entityc

spleen specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002541

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some spleenc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

splenocyte specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_1110116

is equivalent to
cell specimenc and (is specified output ofop some organ harvestingc and (has specified inputop some spleenc))
has super-classes
processed specimenc
cell specimenc

sputumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0007311

has super-classes
respiratory system fluid/secretionc

sputum specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002508

is equivalent to
bodily fluid specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some sputumc)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
bodily fluid specimenc
has sub-classes
induced sputum specimenc

stainingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302887

has super-classes
material processingc
achieves_planned_objectiveop some material transformation objectivec
has sub-classes
H&E slide stainingc, IHC slide stainingc

standard medical treatmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000110

has super-classes
treatmentc

standing declarationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021102

has super-classes
social actc

starting date specification in informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000027

has super-classes
temporal region identifierc

stasisc back to ToC or Class ToC

IRI: http://www.ontologyrepository.com/CommonCoreOntologies/Stasis

Date :
Retrieved from Common Core Ontologies 7/17/2018
has super-classes
processc
has sub-classes
ownership statisc, stasis of generically dependent continuantc

stasis of anonymizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000226

has super-classes
stasis of generically dependent continuantc

stasis of generically dependent continuantc back to ToC or Class ToC

IRI: http://www.ontologyrepository.com/CommonCoreOntologies/StasisOfGenericallyDependentContinuant

Date :
Retrieved from Common Core Ontologies 7/17/2018
has super-classes
stasisc
has sub-classes
stasis of anonymizationc, stasis of regulationc

stasis of lawc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000298

has super-classes
stasis of regulationc

stasis of regulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000297

has super-classes
stasis of generically dependent continuantc
has sub-classes
stasis of lawc

statistical analysis sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000644

has super-classes
document partc
has partop some statistical analysis textual entityc

statistical analysis textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000643

has super-classes
textual entityc

stomachc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000945

has super-classes
material anatomical entityc

stomach specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002528

is equivalent to
digestive tract specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some stomachc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
digestive tract specimenc

storagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302893

has super-classes
material maintenancec
has specified inputop some material entityc
achieves_planned_objectiveop some material maintenance objectivec
has sub-classes
agar stab storagec, freezing storagec, lyophilization storagec, paraffin storagec

storage duration of signed informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000126

has super-classes
temporal regionc

strand of hairc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001037

has super-classes
material anatomical entityc

study bias sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000706

has super-classes
study limitations sectionc

study designc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500000

has super-classes
plan specificationc
has partop some protocolc

study design executionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000471

is equivalent to
planned processc and (realizesop some concretizesop some study designc)
has super-classes
planned processc

study duration measurementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000087

has super-classes
measurement datumc

study limitations sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000631

has super-classes
document partc
has partop some study limitations textual entityc
is aboutop some study designc
has sub-classes
study bias sectionc

study limitations textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000632

has super-classes
textual entityc

study protocolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000292

has super-classes
protocolc

study requiring informed consentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000064

has super-classes
investigationc

study terminationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000107

has super-classes
processc

subject withdrawal with sample stored for limited timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000165

has super-classes
planned processc

subject withdrawal with sample stored for unlimited timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000164

has super-classes
planned processc

subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000006

has super-classes
ontology modulec
has sub-classes
analysis subset ontology modulec, curation subset ontology modulec, exclusion subset ontology modulec, import ontology modulec, ontology module subsetted by expressivityc, single layer subset ontology modulec, species subset ontology modulec

supplementary material to a documentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000326

has super-classes
document partc

suprapubic skinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0036149

has super-classes
material anatomical entityc

suprapubic skin specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002551

is equivalent to
skin of body specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some suprapubic skinc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
skin of body specimenc

swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002599

is equivalent to
specimenc and (is specified output ofop some collecting specimen with swabc)
has super-classes
specimenc
has sub-classes
breast swab specimenc, environmental swab specimenc, fecal swab specimenc, nasal swab specimenc, nasopharyngeal swab specimenc, oral swab specimenc, oropharyngeal swab specimenc, rectal swab specimenc, vagina swab specimenc

sweatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001089

has super-classes
bodily fluidc

sweat specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002509

is equivalent to
bodily fluid specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some sweatc)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
bodily fluid specimenc

symbolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000028

has super-classes
information content entityc
has sub-classes
centrally registered identifier symbolc, lot numberc, model numberc, numeralc, review board approval numberc, serial numberc, version numberc

synovial fluidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001090

has super-classes
bodily fluidc

synovial fluid specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002510

is equivalent to
bodily fluid specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some synovial fluidc)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
bodily fluid specimenc

tablec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000306

has super-classes
textual entityc
has sub-classes
table of abbreviationsc, table of contentsc, table of figuresc

table of abbreviationsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000307

has super-classes
tablec

table of contentsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000327

has super-classes
tablec

table of figuresc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000328

has super-classes
tablec

tables sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000645

has super-classes
document partc
has partop some tablec

target of material additionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_1110109

is equivalent to
has roleop some target of material addition rolec
has super-classes
material entityc

target of material addition rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000444

has super-classes
rolec
characteristic ofop some material entityc
realized inop only adding a material entity into a targetc

taxonomic bridge ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000016

has super-classes
bridge ontology modulec

temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000146

has super-classes
physical qualityc
has sub-classes
frozenc

template generated ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000015

has super-classes
generated ontology modulec

temporal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000008

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
occurrentc
has sub-classes
actual duration of study subject participationc, one-dimensional temporal regionc, permission temporal regionc, storage duration of signed informed consent formc, zero-dimensional temporal regionc
is disjoint with
spatiotemporal regionc, processc, process boundaryc

temporal region identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000022

has super-classes
information content entityc
denotesop some temporal regionc
has sub-classes
effective date specification in informed consent formc, informed consent form signing datec, project duration specificationc, project end date specificationc, project starting date specificationc, starting date specification in informed consent formc

temporal restriction directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000363

has super-classes
permission restriction directivec

testisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000473

has super-classes
material anatomical entityc

testis specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002552

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some testisc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

Tetrapodac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32523

has super-classes
Euteleostomic
has sub-classes
Amniotac

textual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000300

has super-classes
information content entityc
has sub-classes
abbreviation textual entityc, author information textual entityc, author summary textual entityc, availability textual entityc, captionc, case report textual entityc, citationc, comment on investigationc, conclusion textual entityc, conflict of interest textual entityc, consent textual entityc, document titlec, ethical approval textual entityc, filled multiple choice text entityc, funding source declaration textual entityc, future directions textual entityc, genome announcement textual entityc, hypothesis textual entityc, institutional identificationc, keyword textual entityc, patients textual entityc, postal addressc, pre-publication history textual entityc, question textual entityc, related work textual entityc, requirements textual entityc, statistical analysis textual entityc, study limitations textual entityc, tablec, written namec

thingc back to ToC or Class ToC

IRI: http://www.w3.org/2002/07/owl#Thing

has sub-classes
Obsolete Classc, entityc

three dimensional cartesian spatial coordinate datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000403

has super-classes
cartesian spatial coordinate datumc
denotesop some zero-dimensional spatial regionc and (part ofop some three-dimensional spatial regionc)
has x coordinate valuedp exactly 1
has z coordinate valuedp exactly 1
has y coordinate valuedp exactly 1

three-dimensional spatial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000028

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
spatial regionc
is disjoint with
two-dimensional spatial regionc, zero-dimensional spatial regionc, one-dimensional spatial regionc

throatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000341

has super-classes
material anatomical entityc

throat specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000003

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some throatc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

thyroid glandc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002046

has super-classes
material anatomical entityc

thyroid gland specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002537

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some thyroid glandc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

tibial arteryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0007610

has super-classes
arteryc

tibial artery specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002525

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some tibial arteryc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

tibial nervec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001323

has super-classes
material anatomical entityc

tibial nerve specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002539

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some tibial nervec))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

time limit on usec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000025

This should be coupled with an integer value indicating the number of months.
has super-classes
data use modifierc

time measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000416

has super-classes
scalar measurement datumc
(has measurement unit labelop only time unitc) and (is duration ofop only processc)
is in domain of
is duration ofop
is in range of
has time stampop

time sampled measurement data setc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000584

has super-classes
data setc
has partop some time stamped measurement datumc

time stamped measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000582

has super-classes
measurement datumc
(has time stampop some time measurement datumc) and (has measurement datumop some measurement datumc)
is in domain of
has measurement datumop, has time stampop

time triggerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000034

has super-classes
conditional specificationc

time unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000003

has super-classes
measurement unit labelc

tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000479

has super-classes
material anatomical entityc
has sub-classes
adipose tissuec, bone marrowc, esophagus muscularis mucosac, skeletal muscle tissuec

tissue sample collectingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000162

has super-classes
biological sample collectingc

tonguec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001723

has super-classes
material anatomical entityc

tongue swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002610

is equivalent to
oral swab specimenc and (is specified output ofop some collecting specimen with swabc) and (is specified output ofop some specimen collection processc and (has specified inputop some tonguec))
has super-classes
oral swab specimenc

Topicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/topic_0003

has super-classes
information content entityc

total RNA extractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000895

is equivalent to
RNA extractc and (is specified output ofop some total RNA extractionc)
has super-classes
RNA extractc

total RNA extractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000855

has super-classes
RNA extractionc

tracheac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0003126

has super-classes
material anatomical entityc

tracheal aspirate specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002778

is equivalent to
lower respiratory tract specimenc and (is specified output ofop some aspiration specimen collectionc) and (is specified output ofop some specimen collection processc and (has specified inputop some tracheac))
has super-classes
lower respiratory tract aspirate specimenc

treatmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000090

has super-classes
planned processc
has sub-classes
standard medical treatmentc

trigger condition directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000252

has super-classes
directive information entityc
has sub-classes
protection directivec

two dimensional cartesian spatial coordinate datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000402

has super-classes
cartesian spatial coordinate datumc
denotesop some zero-dimensional spatial regionc and (part ofop some two-dimensional spatial regionc)
has x coordinate valuedp exactly 1
has y coordinate valuedp exactly 1

two-dimensional continuant fiat boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000146

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
continuant fiat boundaryc
is disjoint with
one-dimensional continuant fiat boundaryc

two-dimensional spatial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000009

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
spatial regionc
is disjoint with
three-dimensional spatial regionc

umbilical cord bloodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0012168

has super-classes
arterial bloodc

umbilical cord blood specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000012

is equivalent to
blood specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some umbilical cord bloodc)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
arterial blood specimenc

upper respiratory tractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001557

has super-classes
material anatomical entityc

upper respiratory tract specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000006

is equivalent to
respiratory system specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some upper respiratory tractc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
respiratory system specimenc
has sub-classes
nasal aspirate specimenc, nasal swab specimenc, nasopharynx specimenc, oropharyngeal swab specimenc

urethrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000057

has super-classes
material anatomical entityc

urethra specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000001

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some urethrac))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

urinary bladderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001255

has super-classes
material anatomical entityc

urinary bladder specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002524

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some urinary bladderc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc

urinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001088

has super-classes
organism substancec

urine specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000651

is equivalent to
bodily fluid specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some urinec)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
bodily fluid specimenc

use of medication inclusion criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002558

has super-classes
inclusion criterionc

user input directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000242

has super-classes
directive information entityc
has sub-classes
option to checkc

user specific restrictionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000026

has super-classes
data use modifierc

uterine cervixc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000002

has super-classes
material anatomical entityc

uterine cervix specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000000

is equivalent to
uterus specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some uterine cervixc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
uterus specimenc

uterusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000995

has super-classes
material anatomical entityc

uterus specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002553

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some uterusc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc
has sub-classes
uterine cervix specimenc

vaginac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000996

has super-classes
material anatomical entityc

vagina specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002554

is equivalent to
specimen from organismc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some vaginac))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
specimen from organismc
has sub-classes
vagina swab specimenc

vagina swab specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002611

is equivalent to
vagina specimenc and (is specified output ofop some collecting specimen with swabc) and (is specified output ofop some specimen collection processc and (has specified inputop some vaginac))
has super-classes
vagina specimenc
swab specimenc

validating an informed consent formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000003

has super-classes
planned processc

value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001933

has super-classes
information content entityc
has sub-classes
maximum age value specificationc, minimum age value specificationc
is in range of
has value specificationop

Venn diagramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000181

has super-classes
graphc

venous bloodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0013756

has super-classes
bloodc

venous blood specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000014

is equivalent to
blood specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some venous bloodc)) and (is specified output ofop some collecting specimen from organismc)
has super-classes
blood specimenc

version numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000129

has super-classes
symbolc

Vertebrata <vertebrates>c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7742

has super-classes
Bilateriac
has sub-classes
Euteleostomic

viabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000169

has super-classes
organismal qualityc
has sub-classes
alivec, deadc

videoc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ERO_0000333

has super-classes
data format specificationc

Virusesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10239

has super-classes
organismc

vitreous humorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001797

has super-classes
organism substancec

vitreous humor specimenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002511

is equivalent to
eye specimenc and ((is specified output ofop some specimen collection processc) and (derives fromop some tissuec and (part ofop some vitreous humorc))) and (is specified output ofop some collecting specimen from organismc)
has super-classes
eye specimenc

vulnerabilityc back to ToC or Class ToC

IRI: http://purl.unep.org/sdg/SDGIO_00000024

Date :
Imported 08.22.2018
has super-classes
dispositionc
has sub-classes
economic vulnerabilityc, educational vulnerabilityc

vulnerable individual rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000285

has super-classes
rolec

vulnerable population directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000267

has super-classes
directive information entityc

waiver directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000307

has super-classes
directive information entityc

waiver documentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000290

has super-classes
documentc

waste managementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHMO_0002845

has super-classes
planned processc
has sub-classes
material disposalc

whole mount tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_1000049

has super-classes
whole organism preparationc
processed specimenc
is specified output ofop some histological sample preparationc
derives fromop some material anatomical entityc

whole organism preparationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000680

has super-classes
specimenc
derives fromop some organismc
has sub-classes
whole mount tissuec

withdrawal from participation directivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000255

has super-classes
directive information entityc

withdrawing participation in studyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000108

has super-classes
planned processc

witness rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000254

has super-classes
rolec

written namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000590

has super-classes
textual entityc
has sub-classes
author identificationc

yes answer text entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000172

has super-classes
filled multiple choice text entityc

zero-dimensional continuant fiat boundaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000147

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
continuant fiat boundaryc
is disjoint with
one-dimensional continuant fiat boundaryc

zero-dimensional spatial regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000018

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
spatial regionc
is disjoint with
three-dimensional spatial regionc

zero-dimensional temporal regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000148

is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
temporal regionc
is disjoint with
one-dimensional temporal regionc

zone improvement plan codec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000648

has super-classes
postal codec

Object Properties

2D boundary ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002000

is inverse of
has 2D boundaryop

achieves_planned_objectiveop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000417

has domain
planned processc
has range
objective specificationc
is inverse of
objective_achieved_byop

agent inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000225

has super-properties
participates inop
is inverse of
has agentop

bearer ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000053

has characteristics : inverse functional

has sub-properties
has dispositionop, has functionop, has qualityop, has roleop
has range
specifically dependent continuantc
is inverse of
characteristic ofop

characteristic ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000052

Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.

has characteristics : functional

has sub-properties
disposition ofop, function ofop, quality ofop, role ofop
is inverse of
bearer ofop

concretizesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000059

has domain
specifically dependent continuantc
processc or specifically dependent continuantc
has range
generically dependent continuantc
is inverse of
is concretized asop

contains processop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000067

is defined by
http://purl.obolibrary.org/obo/bfo.owl
Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant
is inverse of
occurs inop

denoted byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000235

has domain
entityc
has range
information content entityc
is inverse of
denotesop

denotesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000219

has super-properties
is aboutop
has domain
information content entityc
has range
entityc
is inverse of
denoted byop

DEPRECATED bearer ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004097

DEPRECATED inheres inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0004096

DEPRECATED This relation is similar to but different in important respects to the characteristic-of relation. See comments on that relation for more information.

derives fromop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001000

has super-properties
top object property
is inverse of
derives intoop

derives intoop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001001

is inverse of
derives fromop

designated byop back to ToC or Object Property ToC

IRI: http://www.ontologyrepository.com/CommonCoreOntologies/designated_by

Date :
Imported 08.09.2018

disposition ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000092

This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
has super-properties
characteristic ofop
is inverse of
has dispositionop

function ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000079

This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
has super-properties
characteristic ofop
has domain
functionc
is inverse of
has functionop

has 2D boundaryop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002002

has domain
material entityc
has range
immaterial entityc
is inverse of
2D boundary ofop

has active participantop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002218

has super-properties
has participantop

has agentop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000224

A relation between an instance of Process and an instance of Continuant, where the continuant is a causal participant in the process.
has super-properties
has participantop
is inverse of
agent inop

has componentop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002180

has super-properties
has partop

has coordinate unit labelop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000407

relating a cartesian spatial coordinate datum to a unit label that together with the values represent a point

has characteristics : functional

has super-properties
has partop
has domain
cartesian spatial coordinate datumc
has range
length unitc

has dispositionop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000091

has super-properties
bearer ofop
has domain
independent continuantc
has range
dispositionc
is inverse of
disposition ofop

has familial relationship toop back to ToC or Object Property ToC

IRI: http://www.ontologyrepository.com/CommonCoreOntologies/has_familial_relationship_to

Date :
Retrieved from Common Core Ontologies 2/06/2019

has functionop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000085

has super-properties
bearer ofop
has domain
independent continuantc
has range
functionc
is inverse of
function ofop

has grainop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000643

has super-properties
has partop

has measurement datumop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000583

has super-properties
has partop
has domain
time stamped measurement datumc
has range
measurement datumc and (not (time measurement datumc))

has measurement unit labelop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000039

has characteristics : functional

has super-properties
has partop
has range
measurement unit labelc

has memberop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002351

has characteristics : irreflexive

has super-properties
has partop
is inverse of
member ofop

has partop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000051

has characteristics : transitive

has sub-properties
has componentop, has coordinate unit labelop, has grainop, has measurement datumop, has measurement unit labelop, has memberop, has time stampop, has value specificationop
is inverse of
part ofop

has participantop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000057

has sub-properties
has active participantop, has agentop, has specified inputop, has specified outputop, legally revokesop
has domain
occurrentc
has range
continuantc
is inverse of
participates inop

has qualityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000086

has super-properties
bearer ofop
has range
qualityc
is inverse of
quality ofop

has roleop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000087

has super-properties
bearer ofop
has domain
independent continuantc
has range
rolec
is inverse of
role ofop

has specified inputop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000293

has super-properties
has participantop
has domain
planned processc
is inverse of
is specified input ofop

has specified outputop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000299

has super-properties
has participantop
has domain
planned processc
is inverse of
is specified output ofop

has time stampop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000581

has characteristics : functional

has super-properties
has partop
has domain
time stamped measurement datumc
has range
time measurement datumc

has value specificationop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001938

has super-properties
has partop
has domain
information content entityc
has range
value specificationc

is aboutop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000136

has sub-properties
denotesop, is duration ofop, is quality measurement ofop, is quality specification ofop, mentionsop, prescribesop
has domain
information content entityc

is concretized asop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000058

has domain
generically dependent continuantc
has range
specifically dependent continuantc
processc or specifically dependent continuantc
is inverse of
concretizesop

is duration ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000413

has super-properties
is aboutop
has domain
time measurement datumc
has range
processc

is quality measured asop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000417

is inverse of
is quality measurement ofop

is quality measurement ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000221

has super-properties
is aboutop
has domain
measurement datumc
has range
qualityc
is inverse of
is quality measured asop

is quality specification ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000418

has super-properties
is aboutop
is inverse of
quality is specified asop

is restricted toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000010

is specified input ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000295

has super-properties
participates inop
has range
planned processc
is inverse of
has specified inputop

is specified output ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000312

has super-properties
participates inop
has range
planned processc
is inverse of
has specified outputop

is-aggregate-ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OMRSE_00000020

We anticipate BFO 2.0 including and defining this relation. When it does, we will obsolete this property and declare it equivalent to the BFO 2.0 relation.
has super-properties
top object property

is_supported_by_dataop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000124

has domain
conclusion based on datac
has range
data itemc

legally revokesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021011

has characteristics : asymmetric, functional, irreflexive

has super-properties
has participantop
has domain
deontic declarationc
has range
deontic rolec

located inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001025

has characteristics : transitive

has domain
independent continuantc
independent continuantc and (not (spatial regionc))
has range
independent continuantc
independent continuantc and (not (spatial regionc))
is inverse of
location ofop

location ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001015

has characteristics : transitive

is inverse of
located inop

member ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002350

has super-properties
part ofop
is inverse of
has memberop

mentionsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000142

has super-properties
is aboutop

objective_achieved_byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000833

has domain
objective specificationc
has range
planned processc
is inverse of
achieves_planned_objectiveop

obsolete form signed byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000067

has super-properties
obsolete propertyop

obsolete is assigned by organizationop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000132

has super-properties
obsolete propertyop

obsolete is associated with review board approval numberop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000130

has super-properties
obsolete propertyop
has domain
informed consent formc
has range
review board approval numberc

obsolete_describesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000222

has super-properties
obsolete propertyop

obsolete_legally transfersop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0021012

has characteristics : asymmetric, functional, irreflexive

has super-properties
obsolete propertyop

obsolete_materially denotesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000220

has super-properties
obsolete propertyop

obsolete_representsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000223

has super-properties
obsolete propertyop

obsolete_specifically denotesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000135

has super-properties
obsolete propertyop

occurs inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000066

is defined by
http://purl.obolibrary.org/obo/bfo.owl
Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant
has domain
occurrentc
has range
independent continuantc
is inverse of
contains processop
has sub-property chains
part ofop o occurs inop
occurs inop o part ofop

part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000050

has characteristics : transitive

has sub-properties
member ofop
is inverse of
has partop

participates inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000056

has sub-properties
agent inop, is specified input ofop, is specified output ofop
has domain
continuantc
has range
occurrentc
is inverse of
has participantop

permitsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000216

has super-properties
realized inop

preceded byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000062

prescribed byop back to ToC or Object Property ToC

IRI: http://www.ontologyrepository.com/CommonCoreOntologies/prescribed_by

Date :
Imported 08.09.2018
is inverse of
prescribesop

prescribesop back to ToC or Object Property ToC

IRI: http://www.ontologyrepository.com/CommonCoreOntologies/prescribes

For all types T1 and T2, if T1 prescribes T2, then there is some instance of T1, t1, that serves as a rule or guide to some instance of T2, t2 (if T2 is a type of bfo:Occurrent) or that serves as a model for some instance of T2, t2 (if T2 is a type of bfo:Continuant).
has super-properties
is aboutop
is inverse of
prescribed byop

quality is specified asop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000419

is inverse of
is quality specification ofop

quality ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000080

This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
has super-properties
characteristic ofop
is inverse of
has qualityop

realized inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000054

is defined by
http://purl.obolibrary.org/obo/bfo.owl
Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process
has super-properties
top object property
has sub-properties
permitsop
has domain
realizable entityc
has range
processc
is inverse of
realizesop

realizesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000055

is defined by
http://purl.obolibrary.org/obo/iao.owl
Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process
has super-properties
top object property
has domain
processc
has range
realizable entityc
is inverse of
realized inop

role ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000081

This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
has super-properties
characteristic ofop
is inverse of
has roleop

Data Properties

has measurement valuedp back to ToC or Data Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000004

has characteristics : functional

has domain
scalar measurement datumc
has range
double

has x coordinate valuedp back to ToC or Data Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000404

has characteristics : functional

has domain
cartesian spatial coordinate datumc
has range
float

has y coordinate valuedp back to ToC or Data Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000406

has characteristics : functional

has domain
cartesian spatial coordinate datumc
has range
float

has z coordinate valuedp back to ToC or Data Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000405

has characteristics : functional

has domain
cartesian spatial coordinate datumc
has range
float

Named Individuals

defined classni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000420

belongs to
denotator typec

example to be eventually removedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000002

belongs to
curation status specificationc

named class expressionni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000421

belongs to
denotator typec

obi.owlni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/obi.owl

Date :
31/07/2009
Current version :
2025-01-09
Authors :
Alan Ruttenberg
Allyson Lister
Barry Smith
Bill Bug
Bjoern Peters
Carlo Torniai
Chris Mungall
Chris Stoeckert
Chris Taylor
Christian Bolling
Cristian Cocos
Daniel Rubin
Daniel Schober
Dawn Field
Dirk Derom
Elisabetta Manduchi
Eric Deutsch
Frank Gibson
Gilberto Fragoso
Helen C. Causton
Helen Parkinson
Holger Stenzhorn
James A. Overton
James Malone
Jay Greenbaum
Jeffrey Grethe
Jennifer Fostel
Jessica Turner
Jie Zheng
Joe White
John Westbrook
Kevin Clancy
Larisa Soldatova
Lawrence Hunter
Liju Fan
Luisa Montecchi
Matthew Brush
Matthew Pocock
Melanie Courtot
Melissa Haendel
Mervi Heiskanen
Monnie McGee
Norman Morrison
Philippe Rocca-Serra
Phillip Lord
Pierre Grenon
Richard Bruskiewich
Richard Scheuermann
Robert Stevens
Ryan R. Brinkman
Stefan Wiemann
Susanna-Assunta Sansone
Tanya Gray
Tina Hernandez-Boussard
Trish Whetzel
Yongqun He
Contributors :
Advisors for this project come from the IFOMIS group, Saarbruecken and from the Co-ODE group in Manchester
Please cite the OBI consortium http://purl.obolibrary.org/obo/obi where traditional citation is called for. However it is adequate that individual terms be attributed simply by use of the identifying PURL for the term, in projects that refer to them.
An ontology for representing biomedical investigations, including study designs, the collection and preparation of the targets of investigation, assays, instrumentation and reagents used, as well as the data generated and the types of analysis performed on the data to reach conclusions, and their documentation.

obsolete_coreni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000224

obsolete_otherni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000230

requires discussionni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000428

belongs to
curation status specificationc

term importedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000228

belongs to
obsolescence reason specificationc

term splitni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000229

belongs to
obsolescence reason specificationc

terms mergedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000227

belongs to
obsolescence reason specificationc

to be replaced with external ontology termni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000423

belongs to
curation status specificationc

universalni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000410

belongs to
denotator typec

Annotation Properties

ALT_DEFINITIONap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/NCIT_P325

alternative labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000118

is defined by
http://purl.obolibrary.org/obo/iao.owl
Consider re-defing to: An alternative name for a class or property which can mean the same thing as the preferred name (semantically equivalent, narrow, broad or related).
has sub-properties
ISA alternative termap, NIAID GSCID-BRC alternative termap

antisymmetric propertyap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000427

BFO CLIF specification labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000180

has super-properties
labelap

BFO OWL specification labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000179

has super-properties
labelap

codeap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/NCIT_NHC0

commentap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#comment

Contributing_Sourceap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/NCIT_P322

Contributorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/contributor

is defined by
http://purl.org/dc/elements/1.1/
An entity responsible for making contributions to the content of the resource.
Examples of a Contributor include a person, an organisation, or a service. Typically, the name of a Contributor should be used to indicate the entity.

coverageap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/coverage

created byap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#created_by

creation dateap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#creation_date

Creatorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/creator

is defined by
http://purl.org/dc/elements/1.1/
An entity primarily responsible for making the content of the resource.
Examples of a Creator include a person, an organisation, or a service. Typically, the name of a Creator should be used to indicate the entity.

curator noteap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000232

is defined by
http://purl.obolibrary.org/obo/iao.owl

database_cross_referenceap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasDbXref

Dateap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/date

is defined by
http://purl.org/dc/elements/1.1/
A date associated with an event in the life cycle of the resource.
Typically, Date will be associated with the creation or availability of the resource. Recommended best practice for encoding the date value is defined in a profile of ISO 8601 [W3CDTF] and follows the YYYY-MM-DD format.

default languageap back to ToC or Annotation Property ToC

IRI: http://protege.stanford.edu/plugins/owl/protege#defaultLanguage

definitionap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000115

is defined by
http://purl.obolibrary.org/obo/iao.owl

definition editorap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000117

is defined by
http://purl.obolibrary.org/obo/iao.owl

definition sourceap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000119

is defined by
http://purl.obolibrary.org/obo/iao.owl

Descriptionap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/description

is defined by
http://purl.org/dc/elements/1.1/
An account of the content of the resource.
Description may include but is not limited to: an abstract, table of contents, reference to a graphical representation of content or a free-text account of the content.

DesignNoteap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/NCIT_P98

Display_Nameap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/NCIT_P107

DUO_preferred_labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/DUO_0000041

editor noteap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000116

is defined by
http://purl.obolibrary.org/obo/iao.owl

editor preferred labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000111

is defined by
http://purl.obolibrary.org/obo/iao.owl

elucidationap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000600

is defined by
http://purl.obolibrary.org/obo/iao.owl

exact matchap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2004/02/skos/core#exactMatch

example of usageap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000112

is defined by
http://purl.obolibrary.org/obo/iao.owl

expand assertion toap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000425

expand expression toap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000424

first order logic expressionap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000426

Formatap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/format

is defined by
http://purl.org/dc/elements/1.1/
The physical or digital manifestation of the resource.
Typically, Format may include the media-type or dimensions of the resource. Format may be used to determine the software, hardware or other equipment needed to display or operate the resource. Examples of dimensions include size and duration. Recommended best practice is to select a value from a controlled vocabulary (for example, the list of Internet Media Types [MIME] defining computer media formats).

has associated axiom(fol)ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000602

is defined by
http://purl.obolibrary.org/obo/iao.owl

has associated axiom(nl)ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000601

is defined by
http://purl.obolibrary.org/obo/iao.owl

has axiom labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0010000

is defined by
http://purl.obolibrary.org/obo/iao.owl

has curation statusap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000114

has exact synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasExactSynonym

has ID digit countap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000596

has ID policy forap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000598

has ID prefixap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000599

has ID range allocated toap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000597

has obsolescence reasonap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000231

has ontology root termap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000700

has_obo_namespaceap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasOBONamespace

has_related_synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym

homepageap back to ToC or Annotation Property ToC

IRI: http://xmlns.com/foaf/0.1/homepage

idap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#id

identifierap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/identifier

imported fromap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000412

is defined by
http://purl.obolibrary.org/obo/iao.owl

in branchap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000113

in subsetap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#inSubset

is allocated id rangeap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000603

Add as annotation triples in the granting ontology

is defined byap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#isDefinedBy

is denotator typeap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000411

is metadata tagap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#is_metadata_tag

ISA alternative termap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001847

has super-properties
alternative labelap

labelap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#label

has sub-properties
BFO CLIF specification labelap, BFO OWL specification labelap

languageap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/language

Legacy Concept Nameap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/NCIT_P366

licenseap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/license

licenseap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/license

Date :
11T13:47:29Z/05/2018

may be identical toap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0006011

Edges asserting this should be annotated with to record evidence supporting the assertion and its provenance.

mboxap back to ToC or Annotation Property ToC

IRI: http://xmlns.com/foaf/0.1/mbox

memberap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/member

Merriam-Webster Definitionap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000420

NIAID GSCID-BRC alternative termap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001886

has super-properties
alternative labelap

OBO foundry unique labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000589

ontology term requesterap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000234

The 'term requester' can credit the person, organization or project who request the ontology term.

pageap back to ToC or Annotation Property ToC

IRI: http://xmlns.com/foaf/0.1/page

PICO CLASSap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000404

All classes and properties with this annotation are members of the PICO grammar.

Preferred_Nameap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/NCIT_P108

publisherap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/publisher

read onlyap back to ToC or Annotation Property ToC

IRI: http://protege.stanford.edu/plugins/owl/protege#readOnly

relationap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/relation

retired from use as ofap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000604

rightsap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/rights

RUBRICap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000321

scheduled for obsoletion on or afterap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0006012

has range
date time

see alsoap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#seeAlso

has sub-properties
term_mapping_to_HL7v3ap, term_mapping_to_NCITap, term_mapping_to_UMLSap

Semantic_Typeap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/NCIT_P106

shorthandap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#shorthand

Sourceap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/source

is defined by
http://purl.org/dc/elements/1.1/
A reference to a resource from which the present resource is derived.
The present resource may be derived from the Source resource in whole or in part. Recommended best practice is to reference the resource by means of a string or number conforming to a formal identification system.

sourceap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/source

Subject and Keywordsap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/subject

is defined by
http://purl.org/dc/elements/1.1/
The topic of the content of the resource.
Typically, a Subject will be expressed as keywords, key phrases or classification codes that describe a topic of the resource. Recommended best practice is to select a value from a controlled vocabulary or formal classification scheme.

temporal interpretationap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001900

term replaced byap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0100001

Add as annotation triples in the granting ontology

term tracker itemap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000233

The 'tracker item' can associate a tracker with a specific ontology term.

term_mapping_to_HL7v3ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000093

has super-properties
see alsoap

term_mapping_to_NCITap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000092

has super-properties
see alsoap

term_mapping_to_UMLSap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/ICO_0000091

has super-properties
see alsoap

titleap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/title

is defined by
http://purl.org/dc/elements/1.1/

titleap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/title

typeap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/type

typeap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/1999/02/22-rdf-syntax-ns#type

UMLS_CUIap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/NCIT_P207

SWRL rules

Rule #1back to ToC

bearer ofop(?e,?d) , dispositionc(?d) -> has dispositionop(?e,?d)

Rule #2back to ToC

bearer ofop(?e,?d) , qualityc(?d) -> has qualityop(?e,?d)

Rule #3back to ToC

bearer ofop(?e,?d) , rolec(?d) -> has roleop(?e,?d)

Rule #4back to ToC

bearer ofop(?e,?d) , functionc(?d) -> has functionop(?e,?d)

Namespace Declarations back to ToC

default namespace
http://purl.obolibrary.org/obo/ico.owl#
10-1186
https://doi.org/10.1186/
2025-03-15
http://purl.obolibrary.org/obo/ico/releases/2025-03-15/
axiom
http://purl.obolibrary.org/obo/bfo/axiom/
bfo-ontology
https://github.com/BFO-ontology/
commoncoreontologies
http://www.ontologyrepository.com/CommonCoreOntologies/
dc
http://purl.org/dc/elements/1.1/
dev
http://purl.obolibrary.org/obo/bfo/dev/
foaf
http://xmlns.com/foaf/0.1/
go
http://purl.oboInOwllibrary.org/oboInOwl/go#
group
http://groups.google.com/group/
iao
http://purl.obolibrary.org/obo/iao/
ico-ontology
https://github.com/ICO-ontology/
id
http://linkedlifedata.com/resource/umls/id/
ifomis-org
http://ifomis.org/
information-artifact-ontology
https://github.com/information-artifact-ontology/
issues
https://github.com/information-artifact-ontology/IAO/issues/
mesh
http://identifiers.org/mesh/
obo
http://purl.obolibrary.org/obo/
obo-syntax-html
http://owlcollab.github.io/oboformat/doc/obo-syntax.html#
oboInOwl
http://www.geneontology.org/formats/oboInOwl#
oboinowl
http://purl.oboInOwllibrary.org/oboInOwl/
ordo
http://www.orpha.net/ORDO/
owl
http://www.w3.org/2002/07/owl#
page
http://www.geneontology.org/page/
papers
http://www.referent-tracking.com/_RTU/papers/
protege
http://protege.stanford.edu/plugins/owl/protege#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
resource
http://semanticscience.org/resource/
robot-obolibrary-org
http://robot.obolibrary.org/
s9uug5qmaws
https://groups.google.com/d/msg/bfo-owl-devel/s9Uug5QmAws/
sdg
http://purl.unep.org/sdg/
skos
http://www.w3.org/2004/02/skos/core#
snomedct
http://identifiers.org/snomedct/
subsets
http://purl.obolibrary.org/obo/ro/subsets#
swrl
http://www.w3.org/2003/11/swrl#
swrlb
http://www.w3.org/2003/11/swrlb#
terms
http://purl.org/dc/terms/
thesaurus-owl
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#
wiki
http://ontologydesignpatterns.org/wiki/
xsd
http://www.w3.org/2001/XMLSchema#

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni .