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Minimum PDDI (Potential Drug-Drug Interaction) Information Ontology

Metadata

URI
http://purl.obolibrary.org/obo/mpio.owl
Creator(s)
Maria Herrero-Zazo
Mathias Brochhausen
Contributor(s)
Richard D. Boyce
Sarah Bost
Version Information
release version 2019-01-30
Version URI
http://purl.obolibrary.org/obo/mpio/release/2019-01-30/mpio.owl
Imports
http://purl.obolibrary.org/obo/iao/2015-02-23/ontology-metadata.owl
Ontology RDF
RDF (turtle)

Table of Contents

  1. Classes
  2. Object Properties
  3. Annotation Properties
  4. Namespaces
  5. Legend

Overview

Pictures say 1,000 words
Figure 1: Ontology overview

Classes

countc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000032
Super-classes obo:IAO_0000109c

countingc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000033
Super-classes obo:OBI_0000011c

drug identifierc # Classes

URI http://purl.obolibrary.org/obo/APOLLO_SV_00000461
Super-classes obo:IAO_0000030c

material entityc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000040
Is Defined By http://purl.obolibrary.org/obo/bfo.owl

potential drug-drug interactionc # Classes

URI http://purl.obolibrary.org/obo/DIDEO_00000000
Super-classes obo:IAO_0000030c
Restrictions obo:BFO_0000051op some obo:APOLLO_SV_00000461c

drug-drug interactionc # Classes

URI http://purl.obolibrary.org/obo/DIDEO_00000020
Description

A clinically meaningful alteration in the exposure and/or response to a drug (object drug) that has occurred as a result of the co-administration of another drug (precipitant drug)Oates JA. Chapter 5. Goodman and Gilman 11th ed (2006):117–36; Hines. Response can refer to either precipitating an adverse event or altering the therapeutic effect of the object drug. Although some DDIs may be used for therapeutic benefit, this paper focuses on those with adverse clinical consequences. (based on the 2013 DDI conference series) / has participant some mechanism.

Super-classes obo:GO_0008150c
Restrictions obo:BFO_0000117op some obo:DIDEO_00000021c

drug co-administrationc # Classes

URI http://purl.obolibrary.org/obo/DIDEO_00000021
Description

An instance of this occurs when at least two or more drugs are taken in a specific time interval and the individual time interval for each drug administration overlaps with the other drug's or drugs' time interval(s). (SG1)

Super-classes obo:OBI_0000011c
Restrictions obo:RO_0000057op some (obo:BFO_0000040c and ub310bL150C17c)

obsolete_drug-drug interaction effectc # Classes

URI http://purl.obolibrary.org/obo/DIDEO_00000030
Super-classes oboinowl:ObsoleteClassc

evidence information content entityc # Classes

URI http://purl.obolibrary.org/obo/DIDEO_00000053
Super-classes obo:IAO_0000030c

drug-drug interaction effectc # Classes

URI http://purl.obolibrary.org/obo/DIDEO_00000125
Super-classes obo:GO_0008150c
Sub-classes obo:DINTO_000027c

drug concept set identifierc # Classes

URI http://purl.obolibrary.org/obo/DIDEO_00000128
Description

Term and definition provided by Richard D. Boyce.

Super-classes obo:IAO_0000030c

DDI mechanismc # Classes

URI http://purl.obolibrary.org/obo/DINTO_000003

clinically relevant DDI effectc # Classes

URI http://purl.obolibrary.org/obo/DINTO_000027
Super-classes obo:DIDEO_00000125c

clinical drug rolec # Classes

URI http://purl.obolibrary.org/obo/DRON_00000001

biological_processc # Classes

URI http://purl.obolibrary.org/obo/GO_0008150
Sub-classes obo:DIDEO_00000125c
obo:DIDEO_00000020c

directive information entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000033
Super-classes obo:IAO_0000030c
Sub-classes obo:IAO_0000104c

plan specificationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000104
Description

2/3/2009 Comment from OBI review.

Action specification not well enough specified. Conditional specification not well enough specified. Question whether all plan specifications have objective specifications.

Request that IAO either clarify these or change definitions not to use them

Super-classes obo:IAO_0000033c
Sub-classes obo:MPIO_0000008c

measurement datumc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000109
Super-classes obo:IAO_0000027c
Sub-classes obo:APOLLO_SV_00000032c

medical context informationc # Classes

URI http://purl.obolibrary.org/obo/MPIO_0000000
Super-classes obo:IAO_0000030c

clinical consequences informationc # Classes

URI http://purl.obolibrary.org/obo/MPIO_0000002
Super-classes obo:IAO_0000030c
Restrictions obo:IAO_0000136op some obo:OGMS_0000015c
Sub-classes obo:MPIO_0000003c

information about clinical consequences suspected to be the result of a drug-drug interactionc # Classes

URI http://purl.obolibrary.org/obo/MPIO_0000003
Super-classes obo:MPIO_0000002c
Restrictions obo:IAO_0000136op some obo:DIDEO_00000125c
obo:IAO_0000136op some obo:DINTO_000027c

suspected drug-drug interaction evidencec # Classes

URI http://purl.obolibrary.org/obo/MPIO_0000004
Super-classes obo:IAO_0000030c

mechanism of interaction informationc # Classes

URI http://purl.obolibrary.org/obo/MPIO_0000005
Super-classes obo:IAO_0000030c
Restrictions obo:IAO_0000136op some obo:DINTO_000003c

frequency of harm informationc # Classes

URI http://purl.obolibrary.org/obo/MPIO_0000006
Super-classes (obo:IAO_0000030c and ub310bL403C13c and ub310bL449C13c)
obo:IAO_0000030c

frequency of exposure informationc # Classes

URI http://purl.obolibrary.org/obo/MPIO_0000007
Super-classes obo:IAO_0000030c
(obo:IAO_0000030c and ub310bL502C13c and ub310bL548C13c)

recommended action for potential drug-drug interactionc # Classes

URI http://purl.obolibrary.org/obo/MPIO_0000008
Super-classes obo:IAO_0000104c
(ub310bL601C29c and ub310bL606C13c)

seriousness informationc # Classes

URI http://purl.obolibrary.org/obo/MPIO_0000009
Description

An event is serious when the patient outcome is: Death, Life-threatening Hospitalization (initial or prolonged), disability or permanent damage, congenital anomaly/birth Defect, required intervention to prevent permanent impairment or damage, in involved other important medical events. Source: U.S. Food and Drug Administration. “What is a Serious Adverse Event?” https://urldefense.proofpoint.com/v2/url?u=http-3A__www.fda.gov_Safety_MedWatch_HowToReport_ucm053087.htm&d=DwIGaQ&c=27AKQ-AFTMvLXtgZ7shZqsfSXu-Fwzpqk4BoASshREk&r=_AhKSLG63uT9j7OK4dL0o2DAco1lYASNsYomMJX92ng&m=akNLTN3AxpBiAQmCa5kBvV98eEf8Pl2M-D5MBaU5ANI&s=i_7V5GfnXHZV_wJ4fPZCRVM66e0ZhKlG86F0WWSbxSY&e= (accessed August 19, 2016)

Super-classes obo:IAO_0000030c

severity informationc # Classes

URI http://purl.obolibrary.org/obo/MPIO_0000010
Description

Severity is a term that is too similar to seriousness possibly causing confusion when communicating with clinicians. Moreover, seriousness (like the related term criticality) describes a POTENTIAL impact, whereas severity characterizes a reaction that has been realized in an individual. Since MPIO focuses on potential drug-drug interactions, it cannot include an attribute (severity) that is describing a realized reaction because you are then no longer in the realm of the potential. Finally, the W3C community workgroup that worked on the minimum information model for potential drug-drug interactions greatly preferred the use of an operational classification of risk to a severity rating. Hence, it was obsoleted as a failed exploratory term for the MPIO domain.

Super-classes oboinowl:ObsoleteClassc

operational classification statementc # Classes

URI http://purl.obolibrary.org/obo/MPIO_0000111
Super-classes obo:IAO_0000030c

planned processc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000011
Sub-classes obo:DIDEO_00000021c
obo:APOLLO_SV_00000033c

participant under investigation rolec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000097
Sub-classes obo:OBI_0000220c

biological replicate rolec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000198
Super-classes obo:OBI_0000220c
Sub-classes obo:OBI_0000252c

reference subject rolec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000220
Super-classes obo:OBI_0000097c
Sub-classes obo:OBI_0000198c

cohort rolec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000252
Super-classes obo:OBI_0000198c

organismc # Classes

URI http://purl.obolibrary.org/obo/OBI_0100026

clinical findingc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000014
Super-classes obo:IAO_0000027c
Sub-classes obo:OGMS_0000015c

clinical historyc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000015
Super-classes obo:OGMS_0000014c

collection of organismsc # Classes

URI http://purl.obolibrary.org/obo/PCO_0000000

Obsolete Classc # Classes

URI http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
Sub-classes obo:MPIO_0000010c
obo:DIDEO_00000030c

Object Properties

has partop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000051
Super-properties owl:topObjectProperty

preceded byop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000062
Source http://www.obofoundry.org/ro/#OBO_REL:preceded_by
Super-properties owl:topObjectProperty

has occurrent partop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000117
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-properties owl:topObjectProperty

is aboutop # OPs

URI http://purl.obolibrary.org/obo/IAO_0000136
Super-properties owl:topObjectProperty

has_specified_inputop # OPs

URI http://purl.obolibrary.org/obo/OBI_0000293
Super-properties owl:topObjectProperty

is_specified_output_ofop # OPs

URI http://purl.obolibrary.org/obo/OBI_0000312
Super-properties owl:topObjectProperty

process is result ofop # OPs

URI http://purl.obolibrary.org/obo/OBI_1110060
Super-properties obo:RO_0002087op

bearer_ofop # OPs

URI http://purl.obolibrary.org/obo/RO_0000053
Super-properties owl:topObjectProperty

participates inop # OPs

URI http://purl.obolibrary.org/obo/RO_0000056
Super-properties owl:topObjectProperty

has participantop # OPs

URI http://purl.obolibrary.org/obo/RO_0000057
Source http://www.obofoundry.org/ro/#OBO_REL:has_participant
Super-properties owl:topObjectProperty

immediately preceded byop # OPs

URI http://purl.obolibrary.org/obo/RO_0002087
Description

X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)

Super-properties obo:BFO_0000062op

has memberop # OPs

URI http://purl.obolibrary.org/obo/RO_0002351
Super-properties owl:topObjectProperty

is member ofop # OPs

URI http://semanticscience.org/resource/SIO_000095
Is Defined By http://semanticscience.org/ontology/sio.owl
Description

is member of is a mereological relation between a item and a collection.

Super-properties owl:topObjectProperty

Annotation Properties

Definitionap # APs

URI http://purl.obolibrary.org#Definition

Synonymap # APs

URI http://purl.obolibrary.org/obo#Synonym

BFO OWL specification labelap # APs

URI http://purl.obolibrary.org/obo/BFO_0000179

BFO CLIF specification labelap # APs

URI http://purl.obolibrary.org/obo/BFO_0000180

imported fromap # APs

URI http://purl.obolibrary.org/obo/IAO_0000412

MPIO user-centered definitionap # APs

URI http://purl.obolibrary.org/obo/MPIO_0000001

temporal interpretationap # APs

URI http://purl.obolibrary.org/obo/RO_0001900

Unique Apollo Labelap # APs

URI http://purl.obolibrary.org/obo/apollo_sv.owl/APOLLO_SV_0000040

contributorap # APs

URI http://purl.org/dc/elements/1.1/contributor

coverageap # APs

URI http://purl.org/dc/elements/1.1/coverage

creatorap # APs

URI http://purl.org/dc/elements/1.1/creator

dateap # APs

URI http://purl.org/dc/elements/1.1/date

descriptionap # APs

URI http://purl.org/dc/elements/1.1/description

formatap # APs

URI http://purl.org/dc/elements/1.1/format

identifierap # APs

URI http://purl.org/dc/elements/1.1/identifier

languageap # APs

URI http://purl.org/dc/elements/1.1/language

memberap # APs

URI http://purl.org/dc/elements/1.1/member

publisherap # APs

URI http://purl.org/dc/elements/1.1/publisher

relationap # APs

URI http://purl.org/dc/elements/1.1/relation

rightsap # APs

URI http://purl.org/dc/elements/1.1/rights

Sourceap # APs

URI http://purl.org/dc/elements/1.1/source

subjectap # APs

URI http://purl.org/dc/elements/1.1/subject

titleap # APs

URI http://purl.org/dc/elements/1.1/title

typeap # APs

URI http://purl.org/dc/elements/1.1/type

descriptionap # APs

URI http://purl.org/dc/terms/description

Namespaces

default (:)
http://purl.obolibrary.org/obo/mpio.owl
apollo_sv
http://purl.obolibrary.org/obo/apollo_sv.owl/
dc
http://purl.org/dc/elements/1.1/
obo
http://purl.obolibrary.org/obo/
obo2
http://purl.obolibrary.org/obo#
oboinowl
http://www.geneontology.org/formats/oboInOwl#
owl
http://www.w3.org/2002/07/owl#
protege
http://protege.stanford.edu/plugins/owl/protege#
prov
http://www.w3.org/ns/prov#
purl
http://purl.obolibrary.org#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
sdo
https://schema.org/
sio
http://semanticscience.org/resource/
skos
http://www.w3.org/2004/02/skos/core#
terms
http://purl.org/dc/terms/
xsd
http://www.w3.org/2001/XMLSchema#

Legend

cClasses
opObject Properties
fpFunctional Properties
dpData Properties
dpAnnotation Properties
pProperties
niNamed Individuals