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Metadata

URI
http://purl.obolibrary.org/obo/ms.owl
Version URI
http://purl.obolibrary.org/obo/ms/4.1.35/ms.owl
Imports
http://ontologies.berkeleybop.org/pato.obo
http://ontologies.berkeleybop.org/uo.obo
Ontology RDF
RDF (turtle)

Description

creator: Pierre-Alain Binz <pierre-alain.binz <-at-> chuv.ch>

Table of Contents

  1. Classes
  2. Object Properties
  3. Annotation Properties
  4. Namespaces
  5. Legend

Overview

Pictures say 1,000 words
Figure 1: Ontology overview

Classes ↑

Proteomics Standards Initiative Mass Spectrometry Vocabulariesc # Classes

URI http://purl.obolibrary.org/obo/MS_0000000

sample numberc # Classes

URI http://purl.obolibrary.org/obo/MS_1000001
Super-classes obo:MS_1000548c

sample namec # Classes

URI http://purl.obolibrary.org/obo/MS_1000002
Super-classes obo:MS_1000548c

sample statec # Classes

URI http://purl.obolibrary.org/obo/MS_1000003
Super-classes obo:MS_1000548c
Sub-classes obo:MS_1000050c
obo:MS_1000052c
obo:MS_1000051c
obo:MS_1000047c
obo:MS_1000049c
obo:MS_1000048c

sample massc # Classes

URI http://purl.obolibrary.org/obo/MS_1000004
Super-classes obo:MS_1000548c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000021c

sample volumec # Classes

URI http://purl.obolibrary.org/obo/MS_1000005
Super-classes obo:MS_1000548c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000098c

sample concentrationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000006
Super-classes obo:MS_1000548c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000175c

inlet typec # Classes

URI http://purl.obolibrary.org/obo/MS_1000007
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000458c
Sub-classes obo:MS_1000396c
obo:MS_1000063c
obo:MS_1000249c
obo:MS_1000056c
obo:MS_1000065c
obo:MS_1000062c
obo:MS_1000064c
obo:MS_1000059c
obo:MS_1000055c
obo:MS_1000067c
obo:MS_1000069c
obo:MS_1000057c
obo:MS_1000060c
obo:MS_1000058c
obo:MS_1000068c
obo:MS_1000248c
obo:MS_1000061c
obo:MS_1000066c

ionization typec # Classes

URI http://purl.obolibrary.org/obo/MS_1000008
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000458c
Sub-classes obo:MS_1000402c
obo:MS_1000386c
obo:MS_1000258c
obo:MS_1000271c
obo:MS_1000247c
obo:MS_1000403c
obo:MS_1000073c
obo:MS_1000380c
obo:MS_1000406c
obo:MS_1000389c
obo:MS_1000385c
obo:MS_1000259c
obo:MS_1000407c
obo:MS_1000404c
obo:MS_1000400c
obo:MS_1000074c
obo:MS_1000276c
obo:MS_1000274c
obo:MS_1000383c
obo:MS_1000240c
obo:MS_1000381c
obo:MS_1000272c
obo:MS_1000388c
obo:MS_1000227c
obo:MS_1000399c
obo:MS_1000273c
obo:MS_1000395c
obo:MS_1000446c
obo:MS_1000384c
obo:MS_1000255c
obo:MS_1000408c
obo:MS_1000071c

ionization modec # Classes

URI http://purl.obolibrary.org/obo/MS_1000009
Description

This term was made obsolete because it was replaced by scan polarity (MS:1000465).

analyzer typec # Classes

URI http://purl.obolibrary.org/obo/MS_1000010
Description

This former purgatory term was made obsolete.

mass resolutionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000011
Super-classes obo:MS_1000503c

resolution measurement methodc # Classes

URI http://purl.obolibrary.org/obo/MS_1000012
Super-classes obo:MS_1000596c
Sub-classes obo:MS_1000085c
obo:MS_1000087c
obo:MS_1000086c

resolution typec # Classes

URI http://purl.obolibrary.org/obo/MS_1000013
Description

This former purgatory term was made obsolete.

accuracyc # Classes

URI http://purl.obolibrary.org/obo/MS_1000014
Super-classes obo:MS_1000480c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000040c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000169c

scan ratec # Classes

URI http://purl.obolibrary.org/obo/MS_1000015
Super-classes obo:MS_1000503c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000807c

scan start timec # Classes

URI http://purl.obolibrary.org/obo/MS_1000016
Super-classes obo:MS_1000503c
obo:MS_1002345c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000010c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000031c

Scan Functionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000017
Description

OBSOLETE This former purgatory term was made obsolete.

scan directionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000018
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000441c
Sub-classes obo:MS_1000093c
obo:MS_1000092c

scan lawc # Classes

URI http://purl.obolibrary.org/obo/MS_1000019
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000441c
Sub-classes obo:MS_1000095c
obo:MS_1000094c
obo:MS_1000096c

scanning methodc # Classes

URI http://purl.obolibrary.org/obo/MS_1000020
Description

OBSOLETE This former purgatory term was made obsolete.

reflectron statec # Classes

URI http://purl.obolibrary.org/obo/MS_1000021
Super-classes obo:MS_1000480c
Sub-classes obo:MS_1000106c
obo:MS_1000105c

TOF Total Path Lengthc # Classes

URI http://purl.obolibrary.org/obo/MS_1000022
Super-classes obo:MS_1000480c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000008c

isolation widthc # Classes

URI http://purl.obolibrary.org/obo/MS_1000023
Description

This former purgatory term was made obsolete.
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000040c

final MS exponentc # Classes

URI http://purl.obolibrary.org/obo/MS_1000024
Super-classes obo:MS_1000480c

magnetic field strengthc # Classes

URI http://purl.obolibrary.org/obo/MS_1000025
Super-classes obo:MS_1000480c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000228c

detector typec # Classes

URI http://purl.obolibrary.org/obo/MS_1000026
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000453c
Sub-classes obo:MS_1000116c
obo:MS_1000253c
obo:MS_1000624c
obo:MS_1000349c
obo:MS_1000351c
obo:MS_1000110c
obo:MS_1000346c
obo:MS_1002308c
obo:MS_1000115c
obo:MS_1000112c
obo:MS_1000345c
obo:MS_1000350c
obo:MS_1000348c
obo:MS_1000347c
obo:MS_1000107c

detector acquisition modec # Classes

URI http://purl.obolibrary.org/obo/MS_1000027
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000453c
Sub-classes obo:MS_1000120c
obo:MS_1000119c
obo:MS_1000118c
obo:MS_1000117c

detector resolutionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000028
Super-classes obo:MS_1000481c

sampling frequencyc # Classes

URI http://purl.obolibrary.org/obo/MS_1000029
Super-classes obo:MS_1000481c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000106c

vendorc # Classes

URI http://purl.obolibrary.org/obo/MS_1000030
Description

This term was made obsolete because it was replaced by instrument model (MS:1000031).

instrument modelc # Classes

URI http://purl.obolibrary.org/obo/MS_1000031
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000463c
Sub-classes obo:MS_1000124c
obo:MS_1000488c
obo:MS_1000490c
obo:MS_1000489c
obo:MS_1000122c
obo:MS_1000126c
obo:MS_1000491c
obo:MS_1000483c
obo:MS_1000121c
obo:MS_1001800c
obo:MS_1000495c

customizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000032
Super-classes obo:MS_1000496c

deisotopingc # Classes

URI http://purl.obolibrary.org/obo/MS_1000033
Super-classes obo:MS_1000543c

charge deconvolutionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000034
Super-classes obo:MS_1000543c

peak pickingc # Classes

URI http://purl.obolibrary.org/obo/MS_1000035
Super-classes obo:MS_1000543c
Sub-classes obo:MS_1000801c
obo:MS_1000802c

scan modec # Classes

URI http://purl.obolibrary.org/obo/MS_1000036
Description

This term was made obsolete because .

polarityc # Classes

URI http://purl.obolibrary.org/obo/MS_1000037
Description

This term was made obsolete because it was redundant with the Pato Ontology term polarity (UO:0002186).

minutec # Classes

URI http://purl.obolibrary.org/obo/MS_1000038
Description

This term was made obsolete because it was redundant with Unit Ontology minute (UO:0000031).

secondc # Classes

URI http://purl.obolibrary.org/obo/MS_1000039
Description

This term was made obsolete because it was redundant with Unit Ontology second (UO:0000010).

m/zc # Classes

URI http://purl.obolibrary.org/obo/MS_1000040
Super-classes obo:UO_0000000c

charge statec # Classes

URI http://purl.obolibrary.org/obo/MS_1000041
Super-classes obo:MS_1000507c
obo:MS_1000455c

peak intensityc # Classes

URI http://purl.obolibrary.org/obo/MS_1000042
Super-classes obo:MS_1000455c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000132c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000814c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000269c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000131c
http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000231c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000905c

intensity unitc # Classes

URI http://purl.obolibrary.org/obo/MS_1000043
Super-classes obo:UO_0000000c
Sub-classes obo:MS_1000814c
obo:MS_1000132c
obo:MS_1000131c
obo:MS_1000905c

dissociation methodc # Classes

URI http://purl.obolibrary.org/obo/MS_1000044
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000456c
Sub-classes obo:MS_1000242c
obo:MS_1000133c
obo:MS_1000262c
obo:MS_1002631c
obo:MS_1000598c
obo:MS_1000435c
obo:MS_1001880c
obo:MS_1000250c
obo:MS_1000433c
obo:MS_1000282c
obo:MS_1000134c
obo:MS_1000599c
obo:MS_1002000c
obo:MS_1000135c
obo:MS_1000136c

collision energyc # Classes

URI http://purl.obolibrary.org/obo/MS_1000045
Super-classes obo:MS_1000510c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000266c
Sub-classes obo:MS_1002014c
obo:MS_1002013c

energy unitc # Classes

URI http://purl.obolibrary.org/obo/MS_1000046
Description

This term was made obsolete because it was redundant with the Unit Ontology term energy unit (UO:0000111).
Super-classes obo:UO_0000000c

emulsionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000047
Super-classes obo:MS_1000003c

gaseous sample statec # Classes

URI http://purl.obolibrary.org/obo/MS_1000048
Super-classes obo:MS_1000003c

liquid sample statec # Classes

URI http://purl.obolibrary.org/obo/MS_1000049
Super-classes obo:MS_1000003c

solid sample statec # Classes

URI http://purl.obolibrary.org/obo/MS_1000050
Super-classes obo:MS_1000003c

solutionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000051
Super-classes obo:MS_1000003c

suspensionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000052
Super-classes obo:MS_1000003c

sample batchc # Classes

URI http://purl.obolibrary.org/obo/MS_1000053
Super-classes obo:MS_1000548c

chromatographyc # Classes

URI http://purl.obolibrary.org/obo/MS_1000054
Description

This former purgatory term was made obsolete.

continuous flow fast atom bombardmentc # Classes

URI http://purl.obolibrary.org/obo/MS_1000055
Super-classes obo:MS_1000007c

direct inletc # Classes

URI http://purl.obolibrary.org/obo/MS_1000056
Super-classes obo:MS_1000007c

electrospray inletc # Classes

URI http://purl.obolibrary.org/obo/MS_1000057
Super-classes obo:MS_1000007c
Sub-classes obo:MS_1000485c

flow injection analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1000058
Super-classes obo:MS_1000007c

inductively coupled plasmac # Classes

URI http://purl.obolibrary.org/obo/MS_1000059
Super-classes obo:MS_1000007c

infusionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000060
Super-classes obo:MS_1000007c

jet separatorc # Classes

URI http://purl.obolibrary.org/obo/MS_1000061
Super-classes obo:MS_1000007c

membrane separatorc # Classes

URI http://purl.obolibrary.org/obo/MS_1000062
Super-classes obo:MS_1000007c

moving beltc # Classes

URI http://purl.obolibrary.org/obo/MS_1000063
Super-classes obo:MS_1000007c

moving wirec # Classes

URI http://purl.obolibrary.org/obo/MS_1000064
Super-classes obo:MS_1000007c

open splitc # Classes

URI http://purl.obolibrary.org/obo/MS_1000065
Super-classes obo:MS_1000007c

particle beamc # Classes

URI http://purl.obolibrary.org/obo/MS_1000066
Super-classes obo:MS_1000007c

reservoirc # Classes

URI http://purl.obolibrary.org/obo/MS_1000067
Super-classes obo:MS_1000007c

septumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000068
Super-classes obo:MS_1000007c

thermospray inletc # Classes

URI http://purl.obolibrary.org/obo/MS_1000069
Super-classes obo:MS_1000007c

atmospheric pressure chemical ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000070
Super-classes obo:MS_1000240c

chemical ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000071
Super-classes obo:MS_1000008c

Electronic Ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000072
Description

This term was made obsolete because it was replaced by electron ionization (MS:1000389).

electrospray ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000073
Super-classes obo:MS_1000008c
Sub-classes obo:MS_1000398c
obo:MS_1000397c

fast atom bombardment ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000074
Super-classes obo:MS_1000008c

matrix-assisted laser desorption ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000075
Super-classes obo:MS_1000247c

negative ion modec # Classes

URI http://purl.obolibrary.org/obo/MS_1000076
Description

This term was made obsolete because it was replaced by negative scan (MS:1000129).

positive ion modec # Classes

URI http://purl.obolibrary.org/obo/MS_1000077
Description

This term was made obsolete because it was replaced by positive scan (MS:1000130).

axial ejection linear ion trapc # Classes

URI http://purl.obolibrary.org/obo/MS_1000078
Super-classes obo:MS_1000291c

fourier transform ion cyclotron resonance mass spectrometerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000079
Super-classes obo:MS_1000443c

magnetic sectorc # Classes

URI http://purl.obolibrary.org/obo/MS_1000080
Super-classes obo:MS_1000443c

quadrupolec # Classes

URI http://purl.obolibrary.org/obo/MS_1000081
Super-classes obo:MS_1000443c

quadrupole ion trapc # Classes

URI http://purl.obolibrary.org/obo/MS_1000082
Super-classes obo:MS_1000264c

radial ejection linear ion trapc # Classes

URI http://purl.obolibrary.org/obo/MS_1000083
Super-classes obo:MS_1000291c

time-of-flightc # Classes

URI http://purl.obolibrary.org/obo/MS_1000084
Super-classes obo:MS_1000443c

baselinec # Classes

URI http://purl.obolibrary.org/obo/MS_1000085
Super-classes obo:MS_1000012c

full width at half-maximumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000086
Super-classes obo:MS_1000012c

ten percent valleyc # Classes

URI http://purl.obolibrary.org/obo/MS_1000087
Super-classes obo:MS_1000012c

constantc # Classes

URI http://purl.obolibrary.org/obo/MS_1000088
Description

This child of the former purgatory term resolution type was made obsolete.

proportionalc # Classes

URI http://purl.obolibrary.org/obo/MS_1000089
Description

This child of the former purgatory term resolution type was made obsolete.

mass scanc # Classes

URI http://purl.obolibrary.org/obo/MS_1000090
Description

This child of the former purgatory term Scan Function was made obsolete.

selected ion detectionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000091
Description

This child of the former purgatory term Scan Function was made obsolete.

decreasing m/z scanc # Classes

URI http://purl.obolibrary.org/obo/MS_1000092
Super-classes obo:MS_1000018c

increasing m/z scanc # Classes

URI http://purl.obolibrary.org/obo/MS_1000093
Super-classes obo:MS_1000018c

exponentialc # Classes

URI http://purl.obolibrary.org/obo/MS_1000094
Super-classes obo:MS_1000019c

linearc # Classes

URI http://purl.obolibrary.org/obo/MS_1000095
Description

This term was made obsolete because it was redundant with the Pato Ontology term linear (UO:0001199).
Super-classes obo:MS_1000019c

quadraticc # Classes

URI http://purl.obolibrary.org/obo/MS_1000096
Super-classes obo:MS_1000019c

constant neutral mass lossc # Classes

URI http://purl.obolibrary.org/obo/MS_1000097
Description

This former purgatory term was made obsolete.

multiple ion monitoringc # Classes

URI http://purl.obolibrary.org/obo/MS_1000098
Description

This former purgatory term was made obsolete.

multiple reaction monitoringc # Classes

URI http://purl.obolibrary.org/obo/MS_1000099
Description

This term was made obsolete because it was merged with selected reaction monitoring (MS:1000206).

precursor ion scanc # Classes

URI http://purl.obolibrary.org/obo/MS_1000100
Description

This former purgatory term was made obsolete.

product ion scanc # Classes

URI http://purl.obolibrary.org/obo/MS_1000101
Description

This former purgatory term was made obsolete.

single ion monitoringc # Classes

URI http://purl.obolibrary.org/obo/MS_1000102
Description

This term was made obsolete because it was replaced by single ion monitoring (MS:100205).

single reaction monitoringc # Classes

URI http://purl.obolibrary.org/obo/MS_1000103
Description

This term was made obsolete because it was replaced by selected reaction monitoring (MS:1000206).

None ??c # Classes

URI http://purl.obolibrary.org/obo/MS_1000104
Description

This term was made obsolete because .

reflectron offc # Classes

URI http://purl.obolibrary.org/obo/MS_1000105
Super-classes obo:MS_1000021c

reflectron onc # Classes

URI http://purl.obolibrary.org/obo/MS_1000106
Super-classes obo:MS_1000021c

channeltronc # Classes

URI http://purl.obolibrary.org/obo/MS_1000107
Super-classes obo:MS_1000026c

conversion dynode electron multiplierc # Classes

URI http://purl.obolibrary.org/obo/MS_1000108
Super-classes obo:MS_1000346c

conversion dynode photomultiplierc # Classes

URI http://purl.obolibrary.org/obo/MS_1000109
Super-classes obo:MS_1000346c

daly detectorc # Classes

URI http://purl.obolibrary.org/obo/MS_1000110
Super-classes obo:MS_1000026c

electron multiplier tubec # Classes

URI http://purl.obolibrary.org/obo/MS_1000111
Super-classes obo:MS_1000253c

faraday cupc # Classes

URI http://purl.obolibrary.org/obo/MS_1000112
Super-classes obo:MS_1000026c

focal plane arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1000113
Super-classes obo:MS_1000348c

microchannel plate detectorc # Classes

URI http://purl.obolibrary.org/obo/MS_1000114
Super-classes obo:MS_1000345c

multi-collectorc # Classes

URI http://purl.obolibrary.org/obo/MS_1000115
Super-classes obo:MS_1000026c

photomultiplierc # Classes

URI http://purl.obolibrary.org/obo/MS_1000116
Super-classes obo:MS_1000026c

analog-digital converterc # Classes

URI http://purl.obolibrary.org/obo/MS_1000117
Super-classes obo:MS_1000027c

pulse countingc # Classes

URI http://purl.obolibrary.org/obo/MS_1000118
Super-classes obo:MS_1000027c

time-digital converterc # Classes

URI http://purl.obolibrary.org/obo/MS_1000119
Super-classes obo:MS_1000027c

transient recorderc # Classes

URI http://purl.obolibrary.org/obo/MS_1000120
Super-classes obo:MS_1000027c

SCIEX instrument modelc # Classes

URI http://purl.obolibrary.org/obo/MS_1000121
Super-classes obo:MS_1000031c
Sub-classes obo:MS_1002586c
obo:MS_1000147c
obo:MS_1000146c
obo:MS_1002584c
obo:MS_1000657c
obo:MS_1000652c
obo:MS_1000931c
obo:MS_1002590c
obo:MS_1000651c
obo:MS_1000194c
obo:MS_1002591c
obo:MS_1000932c
obo:MS_1002580c
obo:MS_1000190c
obo:MS_1000187c
obo:MS_1002577c
obo:MS_1002583c
obo:MS_1000870c
obo:MS_1002589c
obo:MS_1002533c
obo:MS_1000655c
obo:MS_1002581c
obo:MS_1002578c
obo:MS_1000654c
obo:MS_1002585c
obo:MS_1002595c
obo:MS_1000186c
obo:MS_1002588c
obo:MS_1000139c
obo:MS_1002592c
obo:MS_1002582c
obo:MS_1000143c
obo:MS_1000653c
obo:MS_1002579c
obo:MS_1000195c
obo:MS_1001482c
obo:MS_1002593c
obo:MS_1000144c
obo:MS_1002587c
obo:MS_1002594c
obo:MS_1000145c
obo:MS_1000656c
obo:MS_1002674c

Bruker Daltonics instrument modelc # Classes

URI http://purl.obolibrary.org/obo/MS_1000122
Super-classes obo:MS_1000031c
Sub-classes obo:MS_1001533c
obo:MS_1003005c
obo:MS_1001536c
obo:MS_1002293c
obo:MS_1001545c
obo:MS_1001556c
obo:MS_1000697c
obo:MS_1001535c
obo:MS_1001534c
obo:MS_1001547c
obo:MS_1002294c
obo:MS_1001548c

IonSpec instrument modelc # Classes

URI http://purl.obolibrary.org/obo/MS_1000123
Super-classes obo:MS_1000489c
Sub-classes obo:MS_1000182c
obo:MS_1000200c
obo:MS_1000158c
obo:MS_1000181c
obo:MS_1000163c
obo:MS_1000162c

Shimadzu instrument modelc # Classes

URI http://purl.obolibrary.org/obo/MS_1000124
Super-classes obo:MS_1000031c
Sub-classes obo:MS_1000602c
obo:MS_1000603c

Thermo Finnigan instrument modelc # Classes

URI http://purl.obolibrary.org/obo/MS_1000125
Super-classes obo:MS_1000483c
Sub-classes obo:MS_1000167c
obo:MS_1000634c
obo:MS_1000558c
obo:MS_1000578c
obo:MS_1000185c
obo:MS_1000153c
obo:MS_1000179c
obo:MS_1000196c
obo:MS_1000197c
obo:MS_1000154c
obo:MS_1000199c
obo:MS_1000198c
obo:MS_1000169c
obo:MS_1000193c
obo:MS_1000554c
obo:MS_1000168c

Waters instrument modelc # Classes

URI http://purl.obolibrary.org/obo/MS_1000126
Super-classes obo:MS_1000031c
Sub-classes obo:MS_1001783c
obo:MS_1001790c
obo:MS_1000184c
obo:MS_1001780c
obo:MS_1001761c
obo:MS_1000171c
obo:MS_1001775c
obo:MS_1000166c
obo:MS_1001781c
obo:MS_1001763c
obo:MS_1001786c
obo:MS_1001762c
obo:MS_1001765c
obo:MS_1000170c
obo:MS_1001787c
obo:MS_1000818c
obo:MS_1001782c
obo:MS_1001767c
obo:MS_1000191c
obo:MS_1001764c
obo:MS_1001773c
obo:MS_1002726c
obo:MS_1001791c
obo:MS_1002275c
obo:MS_1001777c
obo:MS_1000164c
obo:MS_1002276c
obo:MS_1001771c
obo:MS_1001792c
obo:MS_1000819c
obo:MS_1000150c
obo:MS_1001772c
obo:MS_1002728c
obo:MS_1000159c
obo:MS_1002731c
obo:MS_1002727c
obo:MS_1001779c
obo:MS_1002730c
obo:MS_1002277c
obo:MS_1001778c
obo:MS_1000180c
obo:MS_1001770c
obo:MS_1000189c
obo:MS_1000188c
obo:MS_1001789c
obo:MS_1001769c
obo:MS_1001776c
obo:MS_1000192c
obo:MS_1002274c
obo:MS_1000632c
obo:MS_1000165c
obo:MS_1001785c
obo:MS_1001788c
obo:MS_1001784c
obo:MS_1001768c
obo:MS_1001774c
obo:MS_1001766c
obo:MS_1002729c

centroid spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000127
Super-classes obo:MS_1000525c

profile spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000128
Super-classes obo:MS_1000525c

negative scanc # Classes

URI http://purl.obolibrary.org/obo/MS_1000129
Super-classes obo:MS_1000808c
obo:MS_1000465c

positive scanc # Classes

URI http://purl.obolibrary.org/obo/MS_1000130
Super-classes obo:MS_1000808c
obo:MS_1000465c

number of detector countsc # Classes

URI http://purl.obolibrary.org/obo/MS_1000131
Super-classes obo:MS_1000043c

percent of base peakc # Classes

URI http://purl.obolibrary.org/obo/MS_1000132
Super-classes obo:MS_1000043c

collision-induced dissociationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000133
Super-classes obo:MS_1000044c
Sub-classes obo:MS_1002679c
obo:MS_1000422c
obo:MS_1002472c

plasma desorptionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000134
Super-classes obo:MS_1000044c

post-source decayc # Classes

URI http://purl.obolibrary.org/obo/MS_1000135
Super-classes obo:MS_1000044c

surface-induced dissociationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000136
Super-classes obo:MS_1000044c

electron voltc # Classes

URI http://purl.obolibrary.org/obo/MS_1000137
Description

This term was made obsolete because it was redundant with the Unit Ontology term electron volt (UO:0000266).

normalized collision energyc # Classes

URI http://purl.obolibrary.org/obo/MS_1000138
Super-classes obo:MS_1000510c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000187c
Sub-classes obo:MS_1002218c
obo:MS_1002219c

4000 QTRAPc # Classes

URI http://purl.obolibrary.org/obo/MS_1000139
Super-classes obo:MS_1000121c

4700 Proteomics Analyzerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000140
Super-classes obo:MS_1000495c

apex IVc # Classes

URI http://purl.obolibrary.org/obo/MS_1000141
Super-classes obo:MS_1001556c

apex Qc # Classes

URI http://purl.obolibrary.org/obo/MS_1000142
Super-classes obo:MS_1001556c

API 150EXc # Classes

URI http://purl.obolibrary.org/obo/MS_1000143
Super-classes obo:MS_1000121c

API 150EX Prepc # Classes

URI http://purl.obolibrary.org/obo/MS_1000144
Super-classes obo:MS_1000121c

API 2000c # Classes

URI http://purl.obolibrary.org/obo/MS_1000145
Super-classes obo:MS_1000121c

API 3000c # Classes

URI http://purl.obolibrary.org/obo/MS_1000146
Super-classes obo:MS_1000121c

API 4000c # Classes

URI http://purl.obolibrary.org/obo/MS_1000147
Super-classes obo:MS_1000121c

autoflex IIc # Classes

URI http://purl.obolibrary.org/obo/MS_1000148
Super-classes obo:MS_1001534c

autoflex TOF/TOFc # Classes

URI http://purl.obolibrary.org/obo/MS_1000149
Super-classes obo:MS_1001534c

Auto Spec Ultima NTc # Classes

URI http://purl.obolibrary.org/obo/MS_1000150
Super-classes obo:MS_1000126c

BioTOF IIc # Classes

URI http://purl.obolibrary.org/obo/MS_1000151
Super-classes obo:MS_1001535c

BioTOF-Qc # Classes

URI http://purl.obolibrary.org/obo/MS_1000152
Super-classes obo:MS_1001535c

DELTA plusAdvantagec # Classes

URI http://purl.obolibrary.org/obo/MS_1000153
Super-classes obo:MS_1000125c

DELTAplusXPc # Classes

URI http://purl.obolibrary.org/obo/MS_1000154
Super-classes obo:MS_1000125c

ELEMENT2c # Classes

URI http://purl.obolibrary.org/obo/MS_1000155
Description

This former purgatory term was made obsolete.

esquire 4000c # Classes

URI http://purl.obolibrary.org/obo/MS_1000156
Super-classes obo:MS_1001533c

esquire 6000c # Classes

URI http://purl.obolibrary.org/obo/MS_1000157
Super-classes obo:MS_1001533c

explorerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000158
Super-classes obo:MS_1000123c

GCTc # Classes

URI http://purl.obolibrary.org/obo/MS_1000159
Super-classes obo:MS_1000126c

HCTc # Classes

URI http://purl.obolibrary.org/obo/MS_1000160
Super-classes obo:MS_1000697c

HCTplusc # Classes

URI http://purl.obolibrary.org/obo/MS_1000161
Super-classes obo:MS_1000697c

HiRes ESIc # Classes

URI http://purl.obolibrary.org/obo/MS_1000162
Super-classes obo:MS_1000123c

HiRes MALDIc # Classes

URI http://purl.obolibrary.org/obo/MS_1000163
Super-classes obo:MS_1000123c

IsoPrimec # Classes

URI http://purl.obolibrary.org/obo/MS_1000164
Super-classes obo:MS_1000126c

IsoProbec # Classes

URI http://purl.obolibrary.org/obo/MS_1000165
Super-classes obo:MS_1000126c

IsoProbe Tc # Classes

URI http://purl.obolibrary.org/obo/MS_1000166
Super-classes obo:MS_1000126c

LCQ Advantagec # Classes

URI http://purl.obolibrary.org/obo/MS_1000167
Super-classes obo:MS_1000125c

LCQ Classicc # Classes

URI http://purl.obolibrary.org/obo/MS_1000168
Super-classes obo:MS_1000125c

LCQ Deca XP Plusc # Classes

URI http://purl.obolibrary.org/obo/MS_1000169
Super-classes obo:MS_1000125c

M@LDI Lc # Classes

URI http://purl.obolibrary.org/obo/MS_1000170
Super-classes obo:MS_1000126c

M@LDI LRc # Classes

URI http://purl.obolibrary.org/obo/MS_1000171
Super-classes obo:MS_1000126c

MAT253c # Classes

URI http://purl.obolibrary.org/obo/MS_1000172
Super-classes obo:MS_1000493c

MAT900XPc # Classes

URI http://purl.obolibrary.org/obo/MS_1000173
Super-classes obo:MS_1000493c

MAT900XP Trapc # Classes

URI http://purl.obolibrary.org/obo/MS_1000174
Super-classes obo:MS_1000493c

MAT95XPc # Classes

URI http://purl.obolibrary.org/obo/MS_1000175
Super-classes obo:MS_1000493c

MAT95XP Trapc # Classes

URI http://purl.obolibrary.org/obo/MS_1000176
Super-classes obo:MS_1000493c

microflexc # Classes

URI http://purl.obolibrary.org/obo/MS_1000177
Super-classes obo:MS_1001534c

microTOF LCc # Classes

URI http://purl.obolibrary.org/obo/MS_1000178
Super-classes obo:MS_1001536c

neptunec # Classes

URI http://purl.obolibrary.org/obo/MS_1000179
Super-classes obo:MS_1000125c

NG-5400c # Classes

URI http://purl.obolibrary.org/obo/MS_1000180
Super-classes obo:MS_1000126c

OMEGAc # Classes

URI http://purl.obolibrary.org/obo/MS_1000181
Super-classes obo:MS_1000123c

OMEGA-2001c # Classes

URI http://purl.obolibrary.org/obo/MS_1000182
Super-classes obo:MS_1000123c

OmniFlexc # Classes

URI http://purl.obolibrary.org/obo/MS_1000183
Super-classes obo:MS_1001534c

Platform ICPc # Classes

URI http://purl.obolibrary.org/obo/MS_1000184
Super-classes obo:MS_1000126c

PolarisQc # Classes

URI http://purl.obolibrary.org/obo/MS_1000185
Super-classes obo:MS_1000125c

proteomics solution 1c # Classes

URI http://purl.obolibrary.org/obo/MS_1000186
Super-classes obo:MS_1000121c

Q TRAPc # Classes

URI http://purl.obolibrary.org/obo/MS_1000187
Super-classes obo:MS_1000121c

Q-Tof microc # Classes

URI http://purl.obolibrary.org/obo/MS_1000188
Super-classes obo:MS_1000126c

Q-Tof Ultimac # Classes

URI http://purl.obolibrary.org/obo/MS_1000189
Super-classes obo:MS_1000126c

QSTARc # Classes

URI http://purl.obolibrary.org/obo/MS_1000190
Super-classes obo:MS_1000121c

quattro microc # Classes

URI http://purl.obolibrary.org/obo/MS_1000191
Super-classes obo:MS_1000126c

Quattro Ultimac # Classes

URI http://purl.obolibrary.org/obo/MS_1000192
Super-classes obo:MS_1000126c

Surveyor MSQc # Classes

URI http://purl.obolibrary.org/obo/MS_1000193
Super-classes obo:MS_1000125c

SymBiot Ic # Classes

URI http://purl.obolibrary.org/obo/MS_1000194
Super-classes obo:MS_1000121c

SymBiot XVIc # Classes

URI http://purl.obolibrary.org/obo/MS_1000195
Super-classes obo:MS_1000121c

TEMPUS TOFc # Classes

URI http://purl.obolibrary.org/obo/MS_1000196
Super-classes obo:MS_1000125c

TRACE DSQc # Classes

URI http://purl.obolibrary.org/obo/MS_1000197
Super-classes obo:MS_1000125c

TRITONc # Classes

URI http://purl.obolibrary.org/obo/MS_1000198
Super-classes obo:MS_1000125c

TSQ Quantumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000199
Super-classes obo:MS_1000125c

ultimac # Classes

URI http://purl.obolibrary.org/obo/MS_1000200
Super-classes obo:MS_1000123c

ultraflexc # Classes

URI http://purl.obolibrary.org/obo/MS_1000201
Super-classes obo:MS_1001534c

ultraflex TOF/TOFc # Classes

URI http://purl.obolibrary.org/obo/MS_1000202
Super-classes obo:MS_1001534c

Voyager-DE PROc # Classes

URI http://purl.obolibrary.org/obo/MS_1000203
Super-classes obo:MS_1000495c

Voyager-DE STRc # Classes

URI http://purl.obolibrary.org/obo/MS_1000204
Super-classes obo:MS_1000495c

selected ion monitoringc # Classes

URI http://purl.obolibrary.org/obo/MS_1000205
Super-classes obo:MS_1000596c

selected reaction monitoringc # Classes

URI http://purl.obolibrary.org/obo/MS_1000206
Super-classes obo:MS_1000596c

accurate massc # Classes

URI http://purl.obolibrary.org/obo/MS_1000207
Description

This child of the former purgatory term ion attribute was made obsolete.
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000002c

average massc # Classes

URI http://purl.obolibrary.org/obo/MS_1000208
Description

This child of the former purgatory term ion attribute was made obsolete.
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000002c

appearance energyc # Classes

URI http://purl.obolibrary.org/obo/MS_1000209
Description

This child of the former purgatory term ion attribute was made obsolete.
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000266c

base peakc # Classes

URI http://purl.obolibrary.org/obo/MS_1000210
Super-classes obo:MS_1000231c

OBSOLETE charge numberc # Classes

URI http://purl.obolibrary.org/obo/MS_1000211

daltonc # Classes

URI http://purl.obolibrary.org/obo/MS_1000212
Description

This term was made obsolete because it was redundant with the Unit Ontology term dalton (UO:0000221).

electron affinityc # Classes

URI http://purl.obolibrary.org/obo/MS_1000213
Description

This child of the former purgatory term ion attribute was made obsolete.

electron energy obsoletec # Classes

URI http://purl.obolibrary.org/obo/MS_1000214
Description

This former purgatory term was made obsolete.

exact massc # Classes

URI http://purl.obolibrary.org/obo/MS_1000215
Description

This child of the former purgatory term ion attribute was made obsolete.
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000002c

field-free regionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000216
Super-classes obo:MS_1000487c

ionization cross sectionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000217
Description

This child of the former purgatory term ion reaction was made obsolete.

ionization efficiencyc # Classes

URI http://purl.obolibrary.org/obo/MS_1000218
Description

This term was made obsolete because it was replaced by ionization efficiency (MS:1000392).

ionization energyc # Classes

URI http://purl.obolibrary.org/obo/MS_1000219
Description

This child of the former purgatory term ion attribute was made obsolete.
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000266c

isotope dilution mass spectrometryc # Classes

URI http://purl.obolibrary.org/obo/MS_1000220
Description

This child of the former purgatory term mass spectrometry was made obsolete.

magnetic deflectionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000221
Super-classes obo:MS_1000597c

mass defectc # Classes

URI http://purl.obolibrary.org/obo/MS_1000222
Description

This child of the former purgatory term ion attribute was made obsolete.
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000002c

mass numberc # Classes

URI http://purl.obolibrary.org/obo/MS_1000223
Description

This child of the former purgatory term ion attribute was made obsolete.

molecular massc # Classes

URI http://purl.obolibrary.org/obo/MS_1000224
Super-classes obo:MS_1000861c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000002c

monoisotopic massc # Classes

URI http://purl.obolibrary.org/obo/MS_1000225
Description

This child of the former purgatory term ion attribute was made obsolete.
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000002c

molecular beam mass spectrometryc # Classes

URI http://purl.obolibrary.org/obo/MS_1000226
Description

This child of the former purgatory term mass spectrometer was made obsolete.

multiphoton ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000227
Super-classes obo:MS_1000008c

nitrogen rulec # Classes

URI http://purl.obolibrary.org/obo/MS_1000228
Description

This child of the former purgatory term ion reaction was made obsolete.

nominal massc # Classes

URI http://purl.obolibrary.org/obo/MS_1000229
Description

This child of the former purgatory term ion attribute was made obsolete.
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000002c

odd-electron rulec # Classes

URI http://purl.obolibrary.org/obo/MS_1000230
Description

This child of the former purgatory term ion reaction was made obsolete.

peakc # Classes

URI http://purl.obolibrary.org/obo/MS_1000231
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000442c
Sub-classes obo:MS_1002956c
obo:MS_1002897c
obo:MS_1000210c

peak intensityc # Classes

URI http://purl.obolibrary.org/obo/MS_1000232
Description

This term was made obsolete because it was replaced by base peak intensity (MS:1000505).

proton affinityc # Classes

URI http://purl.obolibrary.org/obo/MS_1000233
Description

This child of the former purgatory term ion attribute was made obsolete.

mass resolving powerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000234
Description

This term was made obsolete because it was replaced by mass resolving power (MS:1000800).

total ion current chromatogramc # Classes

URI http://purl.obolibrary.org/obo/MS_1000235
Super-classes obo:MS_1000810c

transmissionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000236
Super-classes obo:MS_1000496c

unified atomic mass unitc # Classes

URI http://purl.obolibrary.org/obo/MS_1000237
Description

This term was made obsolete because it was redundant with Unit Ontology dalton (UO:0000221).

accelerator mass spectrometryc # Classes

URI http://purl.obolibrary.org/obo/MS_1000238
Description

This child of the former purgatory term mass spectrometer was made obsolete.

atmospheric pressure matrix-assisted laser desorption ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000239
Super-classes obo:MS_1000240c

atmospheric pressure ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000240
Super-classes obo:MS_1000008c
Sub-classes obo:MS_1002011c
obo:MS_1000070c
obo:MS_1000382c
obo:MS_1000239c

Atmostpheric Pressure Photoionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000241
Description

This term was made obsolete because it was replaced by atmospheric pressure photoionization (MS:1000382).

blackbody infrared radiative dissociationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000242
Super-classes obo:MS_1000044c

charge-remote fragmentationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000243
Description

This child of the former purgatory term ion reaction was made obsolete.

consecutive reaction monitoringc # Classes

URI http://purl.obolibrary.org/obo/MS_1000244
Description

This former purgatory term was made obsolete.

charge strippingc # Classes

URI http://purl.obolibrary.org/obo/MS_1000245
Super-classes obo:MS_1000510c

delayed extractionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000246
Super-classes obo:MS_1000597c

desorption ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000247
Super-classes obo:MS_1000008c
Sub-classes obo:MS_1000387c
obo:MS_1000405c
obo:MS_1000075c
obo:MS_1000393c
obo:MS_1000257c

direct insertion probec # Classes

URI http://purl.obolibrary.org/obo/MS_1000248
Super-classes obo:MS_1000007c

direct liquid introductionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000249
Super-classes obo:MS_1000007c

electron capture dissociationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000250
Super-classes obo:MS_1000044c

even-electron ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000251
Description

This child of the former purgatory term ion chemical type was made obsolete.

electron-induced excitation in organicsc # Classes

URI http://purl.obolibrary.org/obo/MS_1000252
Description

This child of the former purgatory term ion reaction was made obsolete.

electron multiplierc # Classes

URI http://purl.obolibrary.org/obo/MS_1000253
Super-classes obo:MS_1000026c
Sub-classes obo:MS_1000111c

electrostatic energy analyzerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000254
Super-classes obo:MS_1000443c

flowing afterglowc # Classes

URI http://purl.obolibrary.org/obo/MS_1000255
Super-classes obo:MS_1000008c

high-field asymmetric waveform ion mobility spectrometryc # Classes

URI http://purl.obolibrary.org/obo/MS_1000256
Description

This child of the former purgatory term mass spectrometer was made obsolete.

field desorptionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000257
Super-classes obo:MS_1000247c

field ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000258
Super-classes obo:MS_1000008c

glow discharge ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000259
Super-classes obo:MS_1000008c

ion kinetic energy spectrometryc # Classes

URI http://purl.obolibrary.org/obo/MS_1000260
Description

This child of the former purgatory term mass spectrometer was made obsolete.

ion mobility spectrometryc # Classes

URI http://purl.obolibrary.org/obo/MS_1000261
Description

This child of the former purgatory term mass spectrometer was made obsolete.

infrared multiphoton dissociationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000262
Super-classes obo:MS_1000044c

isotope ratio mass spectrometryc # Classes

URI http://purl.obolibrary.org/obo/MS_1000263
Description

This child of the former purgatory term mass spectrometry was made obsolete.

ion trapc # Classes

URI http://purl.obolibrary.org/obo/MS_1000264
Super-classes obo:MS_1000443c
Sub-classes obo:MS_1000291c
obo:MS_1000082c

kinetic energy release distributionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000265
Description

This child of the former purgatory term ion reaction was made obsolete.

Laser Desorptionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000266
Description

This term was made obsolete because it was replaced by laser desorption ionization (MS:1000393).

mass analyzed ion kinetic energy spectrometryc # Classes

URI http://purl.obolibrary.org/obo/MS_1000267
Description

This child of the former purgatory term mass spectrometer was made obsolete.

mass spectrometryc # Classes

URI http://purl.obolibrary.org/obo/MS_1000268
Description

This former purgatory term was made obsolete.

mass spectrometry/mass spectrometryc # Classes

URI http://purl.obolibrary.org/obo/MS_1000269
Description

This child of the former purgatory term mass spectrometer was made obsolete.

multiple stage mass spectrometryc # Classes

URI http://purl.obolibrary.org/obo/MS_1000270
Description

This child of the former purgatory term m/z Separation Method was made obsolete.

Negative Ion chemical ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000271
Super-classes obo:MS_1000008c

neutralization reionization mass spectrometryc # Classes

URI http://purl.obolibrary.org/obo/MS_1000272
Super-classes obo:MS_1000008c

photoionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000273
Super-classes obo:MS_1000008c

pyrolysis mass spectrometryc # Classes

URI http://purl.obolibrary.org/obo/MS_1000274
Super-classes obo:MS_1000008c

collision quadrupolec # Classes

URI http://purl.obolibrary.org/obo/MS_1000275
Super-classes obo:MS_1000597c

resonance enhanced multiphoton ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000276
Super-classes obo:MS_1000008c

residual gas analyzerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000277
Description

This child of the former purgatory term mass spectrometer was made obsolete.

surface enhanced laser desorption ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000278
Super-classes obo:MS_1000406c

surface enhanced neat desorptionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000279
Super-classes obo:MS_1000406c

suface ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000280
Description

This term was made obsolete because it was replaced by surface ionization (MS:1000406).

selected ion flow tubec # Classes

URI http://purl.obolibrary.org/obo/MS_1000281
Super-classes obo:MS_1000597c

sustained off-resonance irradiationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000282
Super-classes obo:MS_1000044c

Spark Source Mass Spectrometryc # Classes

URI http://purl.obolibrary.org/obo/MS_1000283
Description

This term was made obsolete because it was replaced by spark ionization (MS:1000404).

stored waveform inverse fourier transformc # Classes

URI http://purl.obolibrary.org/obo/MS_1000284
Super-classes obo:MS_1000443c

total ion currentc # Classes

URI http://purl.obolibrary.org/obo/MS_1000285
Super-classes obo:MS_1003058c

time lag focusingc # Classes

URI http://purl.obolibrary.org/obo/MS_1000286
Super-classes obo:MS_1000597c

time-of-flight mass spectrometerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000287
Description

This child of the former purgatory term mass spectrometer was made obsolete.

cyclotronc # Classes

URI http://purl.obolibrary.org/obo/MS_1000288
Super-classes obo:MS_1000443c

double-focusing mass spectrometerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000289
Description

This child of the former purgatory term mass spectrometer was made obsolete.

hybrid mass spectrometerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000290
Description

This child of the former purgatory term mass spectrometer was made obsolete.

linear ion trapc # Classes

URI http://purl.obolibrary.org/obo/MS_1000291
Super-classes obo:MS_1000264c
Sub-classes obo:MS_1000078c
obo:MS_1000083c

mass spectrograph obsoletec # Classes

URI http://purl.obolibrary.org/obo/MS_1000292
Description

This former purgatory term was made obsolete.

mass spectrometerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000293
Description

This former purgatory term was made obsolete.

mass spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000294
Super-classes obo:MS_1000559c
obo:MS_1000524c
Sub-classes obo:MS_1000326c
obo:MS_1000579c
obo:MS_1000341c
obo:MS_1000582c
obo:MS_1000343c
obo:MS_1000580c
obo:MS_1000581c
obo:MS_1000325c
obo:MS_1000322c
obo:MS_1000583c
obo:MS_1000328c

mattauch-herzog geometryc # Classes

URI http://purl.obolibrary.org/obo/MS_1000295
Description

This former purgatory term was made obsolete.

nier-johnson geometryc # Classes

URI http://purl.obolibrary.org/obo/MS_1000296
Description

This former purgatory term was made obsolete.

paul ion trapc # Classes

URI http://purl.obolibrary.org/obo/MS_1000297
Description

This term was made obsolete because it is redundant to quadrupole ion trap.

prolate traochoidal mass spectrometerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000298
Description

This child of the former purgatory term mass spectrometer was made obsolete.

quistorc # Classes

URI http://purl.obolibrary.org/obo/MS_1000299
Description

This former purgatory term was made obsolete.

reflectronc # Classes

URI http://purl.obolibrary.org/obo/MS_1000300
Super-classes obo:MS_1000597c

sector mass spectrometerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000301
Description

This child of the former purgatory term mass spectrometer was made obsolete.

tandem mass spectrometerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000302
Description

This child of the former purgatory term mass spectrometer was made obsolete.

transmission quadrupole mass spectrometerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000303
Description

This child of the former purgatory term mass spectrometer was made obsolete.

accelerating voltagec # Classes

URI http://purl.obolibrary.org/obo/MS_1000304
Super-classes obo:MS_1000487c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000218c

cyclotron motionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000305
Description

This child of the former purgatory term m/z Separation Method was made obsolete.

dynamic mass spectrometryc # Classes

URI http://purl.obolibrary.org/obo/MS_1000306
Description

This child of the former purgatory term mass spectrometer was made obsolete.

einzel lensc # Classes

URI http://purl.obolibrary.org/obo/MS_1000307
Super-classes obo:MS_1000597c

electric field strengthc # Classes

URI http://purl.obolibrary.org/obo/MS_1000308
Super-classes obo:MS_1000487c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000268c

first stability regionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000309
Super-classes obo:MS_1000597c

fringing fieldc # Classes

URI http://purl.obolibrary.org/obo/MS_1000310
Super-classes obo:MS_1000597c

kinetic energy analyzerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000311
Super-classes obo:MS_1000597c

mass limitc # Classes

URI http://purl.obolibrary.org/obo/MS_1000312
Description

This former purgatory term was made obsolete.

scan m/z range?c # Classes

URI http://purl.obolibrary.org/obo/MS_1000313
Description

This former purgatory term was made obsolete.

mass selective axial ejectionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000314
Description

This child of the former purgatory term m/z Separation Method was made obsolete.

mass selective instabilityc # Classes

URI http://purl.obolibrary.org/obo/MS_1000315
Description

This child of the former purgatory term m/z Separation Method was made obsolete.

mathieu stability diagramc # Classes

URI http://purl.obolibrary.org/obo/MS_1000316
Description

This child of the former purgatory term m/z Separation Method was made obsolete.

orthogonal extractionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000317
Description

This child of the former purgatory term m/z Separation Method was made obsolete.

resonance ion ejectionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000318
Description

This child of the former purgatory term m/z Separation Method was made obsolete.

space charge effectc # Classes

URI http://purl.obolibrary.org/obo/MS_1000319
Super-classes obo:MS_1000487c

static fieldc # Classes

URI http://purl.obolibrary.org/obo/MS_1000320
Super-classes obo:MS_1000597c

2E Mass Spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000321
Description

This child of the former purgatory term m/z Separation Method was made obsolete.

charge inversion mass spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000322
Super-classes obo:MS_1000294c

constant neutral loss scanc # Classes

URI http://purl.obolibrary.org/obo/MS_1000323
Description

This former purgatory term was made obsolete.

constant neutral gain scanc # Classes

URI http://purl.obolibrary.org/obo/MS_1000324
Description

This former purgatory term was made obsolete.

constant neutral gain spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000325
Super-classes obo:MS_1000294c

constant neutral loss spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000326
Super-classes obo:MS_1000294c

consecutive reaction monitoringc # Classes

URI http://purl.obolibrary.org/obo/MS_1000327
Description

This term was made obsolete because it was replaced by consecutive reaction monitoring (MS:1000244).

e/2 mass spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000328
Super-classes obo:MS_1000294c

linked scanc # Classes

URI http://purl.obolibrary.org/obo/MS_1000329
Description

This former purgatory term was made obsolete.

linked scan at constant b/ec # Classes

URI http://purl.obolibrary.org/obo/MS_1000330
Description

This child of the former purgatory term linked scan was made obsolete.

Linked Scan at Constant E2/Vc # Classes

URI http://purl.obolibrary.org/obo/MS_1000331
Description

This child of the former purgatory term linked scan was made obsolete.

Linked Scan at Constant B2/Ec # Classes

URI http://purl.obolibrary.org/obo/MS_1000332
Description

This child of the former purgatory term linked scan was made obsolete.

Linked Scan at Constant B[1-(E/E0)]^1/2 / Ec # Classes

URI http://purl.obolibrary.org/obo/MS_1000333
Description

This child of the former purgatory term linked scan was made obsolete.

MS/MS in Timec # Classes

URI http://purl.obolibrary.org/obo/MS_1000334
Description

This child of the former purgatory term m/z Separation Method was made obsolete.

MS/MS in Spacec # Classes

URI http://purl.obolibrary.org/obo/MS_1000335
Description

This child of the former purgatory term m/z Separation Method was made obsolete.

neutral lossc # Classes

URI http://purl.obolibrary.org/obo/MS_1000336
Super-classes obo:MS_1001055c
Sub-classes obo:MS_1002457c
obo:MS_1002455c
obo:MS_1002456c

nth generation product ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000337
Description

This child of the former purgatory term product ion was made obsolete.

nth generation product ion scanc # Classes

URI http://purl.obolibrary.org/obo/MS_1000338
Description

This former purgatory term was made obsolete.

nth generation product ion spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000339
Description

This term was made obsolete because it was merged with MSn spectrum (MS:1000580).

precursor ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000340
Description

This child of the former purgatory term ion role was made obsolete.

precursor ion spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000341
Super-classes obo:MS_1000294c

product ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000342
Description

This child of the former purgatory term ion role was made obsolete.

product ion spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000343
Description

This term was made obsolete because it was merged with MSn spectrum (MS:1000580).
Super-classes obo:MS_1000294c

progeny ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000344
Description

This child of the former purgatory term ion chemical type was made obsolete.

array detectorc # Classes

URI http://purl.obolibrary.org/obo/MS_1000345
Super-classes obo:MS_1000026c
Sub-classes obo:MS_1000114c
obo:MS_1000621c

conversion dynodec # Classes

URI http://purl.obolibrary.org/obo/MS_1000346
Super-classes obo:MS_1000026c
Sub-classes obo:MS_1000109c
obo:MS_1000108c

dynodec # Classes

URI http://purl.obolibrary.org/obo/MS_1000347
Super-classes obo:MS_1000026c

focal plane collectorc # Classes

URI http://purl.obolibrary.org/obo/MS_1000348
Super-classes obo:MS_1000026c
Sub-classes obo:MS_1000113c

ion-to-photon detectorc # Classes

URI http://purl.obolibrary.org/obo/MS_1000349
Super-classes obo:MS_1000026c

point collectorc # Classes

URI http://purl.obolibrary.org/obo/MS_1000350
Super-classes obo:MS_1000026c

postacceleration detectorc # Classes

URI http://purl.obolibrary.org/obo/MS_1000351
Super-classes obo:MS_1000026c

secondary electronc # Classes

URI http://purl.obolibrary.org/obo/MS_1000352
Description

This former purgatory term was made obsolete.

adduct ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000353
Super-classes obo:MS_1003055c
Sub-classes obo:MS_1002808c
obo:MS_1002807c

aromatic ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000354
Description

This child of the former purgatory term ion chemical type was made obsolete.

analog ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000355
Description

This child of the former purgatory term ion chemical type was made obsolete.

anti-aromatic ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000356
Description

This child of the former purgatory term ion chemical type was made obsolete.

cationized moleculec # Classes

URI http://purl.obolibrary.org/obo/MS_1000357
Description

This child of the former purgatory term ion chemical type was made obsolete.

cluster ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000358
Description

This child of the former purgatory term ion chemical type was made obsolete.

Conventional ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000359
Description

This child of the former purgatory term ion chemical type was made obsolete.

diagnostic ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000360
Description

This child of the former purgatory term ion chemical type was made obsolete.

dimeric ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000361
Description

This child of the former purgatory term ion chemical type was made obsolete.

distonic ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000362
Description

This child of the former purgatory term ion chemical type was made obsolete.

enium ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000363
Description

This child of the former purgatory term ion chemical type was made obsolete.

fragment ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000364
Description

This term was made obsolete because it was replaced by product ion (MS:1000342).

ion?c # Classes

URI http://purl.obolibrary.org/obo/MS_1000365
Description

This former purgatory term was made obsolete.

Isotopologue ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000366
Description

This child of the former purgatory term ion chemical type was made obsolete.

Isotopomeric ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000367
Description

This child of the former purgatory term ion chemical type was made obsolete.

metastable ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000368
Description

This child of the former purgatory term ion stability type was made obsolete.

molecular ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000369
Description

This child of the former purgatory term ion chemical type was made obsolete.

negative ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000370
Description

This child of the former purgatory term ion chemical type was made obsolete.

non-classical ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000371
Description

This child of the former purgatory term ion chemical type was made obsolete.

onium ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000372
Description

This child of the former purgatory term ion chemical type was made obsolete.

principal ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000373
Description

This child of the former purgatory term ion chemical type was made obsolete.

positive ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000374
Description

This child of the former purgatory term ion chemical type was made obsolete.

protonated moleculec # Classes

URI http://purl.obolibrary.org/obo/MS_1000375
Description

This child of the former purgatory term ion chemical type was made obsolete.

radical ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000376
Description

This child of the former purgatory term ion chemical type was made obsolete.

reference ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000377
Description

This child of the former purgatory term ion chemical type was made obsolete.

stable ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000378
Description

This child of the former purgatory term ion stability type was made obsolete.

unstable ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000379
Description

This child of the former purgatory term ion stability type was made obsolete.

adiabatic ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000380
Super-classes obo:MS_1000008c

associative ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000381
Super-classes obo:MS_1000008c

atmospheric pressure photoionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000382
Super-classes obo:MS_1000240c

autodetachmentc # Classes

URI http://purl.obolibrary.org/obo/MS_1000383
Super-classes obo:MS_1000008c

autoionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000384
Super-classes obo:MS_1000008c

charge exchange ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000385
Super-classes obo:MS_1000008c

chemi-ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000386
Super-classes obo:MS_1000008c

desorption/ionization on siliconc # Classes

URI http://purl.obolibrary.org/obo/MS_1000387
Super-classes obo:MS_1000247c

dissociative ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000388
Super-classes obo:MS_1000008c

electron ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000389
Super-classes obo:MS_1000008c

ion desolvationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000390
Description

This child of the former purgatory term ion reaction was made obsolete.

ion-pair formationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000391
Description

This child of the former purgatory term ion reaction was made obsolete.

ionization efficiencyc # Classes

URI http://purl.obolibrary.org/obo/MS_1000392
Super-classes obo:MS_1000482c

laser desorption ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000393
Super-classes obo:MS_1000247c

liquid secondary ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000395
Super-classes obo:MS_1000008c

membrane inletc # Classes

URI http://purl.obolibrary.org/obo/MS_1000396
Super-classes obo:MS_1000007c

microelectrosprayc # Classes

URI http://purl.obolibrary.org/obo/MS_1000397
Super-classes obo:MS_1000073c

nanoelectrosprayc # Classes

URI http://purl.obolibrary.org/obo/MS_1000398
Super-classes obo:MS_1000073c

penning ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000399
Super-classes obo:MS_1000008c

plasma desorption ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000400
Super-classes obo:MS_1000008c

pre-ionization statec # Classes

URI http://purl.obolibrary.org/obo/MS_1000401
Description

This child of the former purgatory term ion reaction was made obsolete.

secondary ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000402
Super-classes obo:MS_1000008c

soft ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000403
Super-classes obo:MS_1000008c

spark ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000404
Super-classes obo:MS_1000008c

surface-assisted laser desorption ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000405
Super-classes obo:MS_1000247c

surface ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000406
Super-classes obo:MS_1000008c
Sub-classes obo:MS_1000279c
obo:MS_1000278c

thermal ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000407
Super-classes obo:MS_1000008c

vertical ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000408
Super-classes obo:MS_1000008c

association reactionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000409
Description

This child of the former purgatory term ion reaction was made obsolete.

alpha-cleavagec # Classes

URI http://purl.obolibrary.org/obo/MS_1000410
Description

This child of the former purgatory term ion reaction was made obsolete.

beta-cleavagec # Classes

URI http://purl.obolibrary.org/obo/MS_1000411
Description

This child of the former purgatory term ion reaction was made obsolete.

buffer gasc # Classes

URI http://purl.obolibrary.org/obo/MS_1000412
Super-classes obo:MS_1000510c

charge-induced fragmentationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000413
Description

This child of the former purgatory term ion reaction was made obsolete.

charge inversion reactionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000414
Description

This child of the former purgatory term ion reaction was made obsolete.

charge permutation reactionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000415
Description

This child of the former purgatory term ion reaction was made obsolete.

charge stripping reactionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000416
Description

This child of the former purgatory term ion reaction was made obsolete.

charge transfer reactionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000417
Description

This child of the former purgatory term ion reaction was made obsolete.

collisional excitationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000418
Description

This child of the former purgatory term ion reaction was made obsolete.

collision gasc # Classes

URI http://purl.obolibrary.org/obo/MS_1000419
Super-classes obo:MS_1000510c

heterolytic cleavagec # Classes

URI http://purl.obolibrary.org/obo/MS_1000420
Description

This child of the former purgatory term ion reaction was made obsolete.

high energy collisionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000421
Description

This child of the former purgatory term ion reaction was made obsolete.

beam-type collision-induced dissociationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000422
Super-classes obo:MS_1000133c
Sub-classes obo:MS_1002481c
obo:MS_1002678c

homolytic cleavagec # Classes

URI http://purl.obolibrary.org/obo/MS_1000423
Description

This child of the former purgatory term ion reaction was made obsolete.

hydrogen/deuterium exchangec # Classes

URI http://purl.obolibrary.org/obo/MS_1000424
Description

This child of the former purgatory term ion reaction was made obsolete.

ion energy loss spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000425
Description

This former purgatory term was made obsolete.

ionizing collisionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000426
Description

This child of the former purgatory term ion reaction was made obsolete.

ion/molecule reactionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000427
Description

This child of the former purgatory term ion reaction was made obsolete.

ion/neutral complexc # Classes

URI http://purl.obolibrary.org/obo/MS_1000428
Description

This child of the former purgatory term ion reaction was made obsolete.

ion/neutral species reactionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000429
Description

This child of the former purgatory term ion reaction was made obsolete.

ion/neutral species exchange reactionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000430
Description

This child of the former purgatory term ion reaction was made obsolete.

kinetic methodc # Classes

URI http://purl.obolibrary.org/obo/MS_1000431
Description

This child of the former purgatory term ion reaction was made obsolete.

low energy collisionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1000432
Description

This child of the former purgatory term ion reaction was made obsolete.

low-energy collision-induced dissociationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000433
Super-classes obo:MS_1000044c

McLafferty Rearrangementc # Classes

URI http://purl.obolibrary.org/obo/MS_1000434
Description

This child of the former purgatory term ion reaction was made obsolete.

photodissociationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000435
Super-classes obo:MS_1000044c

partial charge transfer reactionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000436
Description

This child of the former purgatory term ion reaction was made obsolete.

ion reactionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000437
Description

This child of the former purgatory term ion was made obsolete.

superelastic collisionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000438
Description

This child of the former purgatory term ion reaction was made obsolete.

surface-induced reactionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000439
Description

This child of the former purgatory term ion reaction was made obsolete.

unimolecular dissociationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000440
Description

This child of the former purgatory term ion reaction was made obsolete.

scanc # Classes

URI http://purl.obolibrary.org/obo/MS_1000441
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001458c

spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000442
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001458c
Sub-classes obo:MS_1003077c
obo:MS_1003076c

mass analyzer typec # Classes

URI http://purl.obolibrary.org/obo/MS_1000443
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000451c
Sub-classes obo:MS_1000081c
obo:MS_1000080c
obo:MS_1000079c
obo:MS_1000484c
obo:MS_1000084c
obo:MS_1000254c
obo:MS_1000284c
obo:MS_1000264c
obo:MS_1000288c

m/z Separation Methodc # Classes

URI http://purl.obolibrary.org/obo/MS_1000444
Description

This former purgatory term was made obsolete.

sequential m/z separation methodc # Classes

URI http://purl.obolibrary.org/obo/MS_1000445
Description

This former purgatory term was made obsolete.

fast ion bombardmentc # Classes

URI http://purl.obolibrary.org/obo/MS_1000446
Super-classes obo:MS_1000008c

LTQc # Classes

URI http://purl.obolibrary.org/obo/MS_1000447
Super-classes obo:MS_1000494c

LTQ FTc # Classes

URI http://purl.obolibrary.org/obo/MS_1000448
Super-classes obo:MS_1000494c

LTQ Orbitrapc # Classes

URI http://purl.obolibrary.org/obo/MS_1000449
Super-classes obo:MS_1000494c

LXQc # Classes

URI http://purl.obolibrary.org/obo/MS_1000450
Super-classes obo:MS_1000494c

mass analyzerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000451
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000463c

data transformationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000452
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001458c
Sub-classes obo:MS_1000543c
obo:MS_1000530c

detectorc # Classes

URI http://purl.obolibrary.org/obo/MS_1000453
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000463c

instrument additional descriptionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000454
Description

This former purgatory term was made obsolete.

ion selection attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1000455
Super-classes obo:MS_1000547c
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000442c
Sub-classes obo:MS_1000042c
obo:MS_1002815c
obo:MS_1002234c
obo:MS_1000744c
obo:MS_1002476c
obo:MS_1000041c
obo:MS_1000907c
obo:MS_1000906c
obo:MS_1000633c
obo:MS_1002222c

precursor activationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000456
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000442c

samplec # Classes

URI http://purl.obolibrary.org/obo/MS_1000457
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001458c

sourcec # Classes

URI http://purl.obolibrary.org/obo/MS_1000458
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000463c

spectrum instrument descriptionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000459
Description

This former purgatory term was made obsolete.

unitc # Classes

URI http://purl.obolibrary.org/obo/MS_1000460
Description

This term was made obsolete because it was redundant with the Unit Ontology term unit (UO:0000000).
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001458c

additional descriptionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000461
Description

This former purgatory term was made obsolete.

ion opticsc # Classes

URI http://purl.obolibrary.org/obo/MS_1000462
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000463c
Sub-classes obo:MS_1000597c
obo:MS_1000487c

instrumentc # Classes

URI http://purl.obolibrary.org/obo/MS_1000463
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001458c

mass unitc # Classes

URI http://purl.obolibrary.org/obo/MS_1000464
Description

This term was made obsolete because it was redundant with Unit Ontology mass unit (UO:0000002).

scan polarityc # Classes

URI http://purl.obolibrary.org/obo/MS_1000465
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000441c
Sub-classes obo:MS_1000130c
obo:MS_1000129c

alternatingc # Classes

URI http://purl.obolibrary.org/obo/MS_1000466
Description

This term was made obsolete because .

1200 series LC/MSD SLc # Classes

URI http://purl.obolibrary.org/obo/MS_1000467
Super-classes obo:MS_1000490c

6110 Quadrupole LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1000468
Super-classes obo:MS_1000490c

6120A Quadrupole LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1000469
Super-classes obo:MS_1000490c

6130 Quadrupole LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1000470
Super-classes obo:MS_1000490c

6140 Quadrupole LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1000471
Super-classes obo:MS_1000490c

6210 Time-of-Flight LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1000472
Super-classes obo:MS_1000490c

6310 Ion Trap LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1000473
Super-classes obo:MS_1000490c

6320 Ion Trap LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1000474
Super-classes obo:MS_1000490c

6330 Ion Trap LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1000475
Super-classes obo:MS_1000490c

6340 Ion Trap LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1000476
Super-classes obo:MS_1000490c

6410 Triple Quadrupole LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1000477
Super-classes obo:MS_1000490c

1200 series LC/MSD VLc # Classes

URI http://purl.obolibrary.org/obo/MS_1000478
Super-classes obo:MS_1000490c

purgatoryc # Classes

URI http://purl.obolibrary.org/obo/MS_1000479
Description

The whole branch purgatory term was made obsolete.

mass analyzer attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1000480
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000451c
Sub-classes obo:MS_1000014c
obo:MS_1000024c
obo:MS_1000022c
obo:MS_1000021c
obo:MS_1000025c

detector attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1000481
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000453c
Sub-classes obo:MS_1000029c
obo:MS_1002273c
obo:MS_1000028c

source attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1000482
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000458c
Sub-classes obo:MS_1001913c
obo:MS_1000875c
obo:MS_1000877c
obo:MS_1001879c
obo:MS_1002040c
obo:MS_1000876c
obo:MS_1000486c
obo:MS_1002041c
obo:MS_1000392c

Thermo Fisher Scientific instrument modelc # Classes

URI http://purl.obolibrary.org/obo/MS_1000483
Super-classes obo:MS_1000031c
Sub-classes obo:MS_1000125c
obo:MS_1000493c
obo:MS_1000494c
obo:MS_1000492c

orbitrapc # Classes

URI http://purl.obolibrary.org/obo/MS_1000484
Super-classes obo:MS_1000443c

nanospray inletc # Classes

URI http://purl.obolibrary.org/obo/MS_1000485
Super-classes obo:MS_1000057c

source potentialc # Classes

URI http://purl.obolibrary.org/obo/MS_1000486
Super-classes obo:MS_1000482c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000218c

ion optics attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1000487
Super-classes obo:MS_1000462c
Sub-classes obo:MS_1000304c
obo:MS_1000319c
obo:MS_1000308c
obo:MS_1000216c

Hitachi instrument modelc # Classes

URI http://purl.obolibrary.org/obo/MS_1000488
Super-classes obo:MS_1000031c

Varian instrument modelc # Classes

URI http://purl.obolibrary.org/obo/MS_1000489
Super-classes obo:MS_1000031c
Sub-classes obo:MS_1000123c

Agilent instrument modelc # Classes

URI http://purl.obolibrary.org/obo/MS_1000490
Super-classes obo:MS_1000031c
Sub-classes obo:MS_1000478c
obo:MS_1002799c
obo:MS_1002789c
obo:MS_1002787c
obo:MS_1000475c
obo:MS_1000473c
obo:MS_1002796c
obo:MS_1002797c
obo:MS_1002446c
obo:MS_1000677c
obo:MS_1002801c
obo:MS_1000467c
obo:MS_1002788c
obo:MS_1002444c
obo:MS_1002795c
obo:MS_1002805c
obo:MS_1000675c
obo:MS_1002800c
obo:MS_1000469c
obo:MS_1002791c
obo:MS_1002802c
obo:MS_1000471c
obo:MS_1002783c
obo:MS_1002785c
obo:MS_1002798c
obo:MS_1002794c
obo:MS_1002804c
obo:MS_1000477c
obo:MS_1002445c
obo:MS_1000470c
obo:MS_1002790c
obo:MS_1002784c
obo:MS_1000476c
obo:MS_1002786c
obo:MS_1000676c
obo:MS_1002793c
obo:MS_1002803c
obo:MS_1000468c
obo:MS_1002792c
obo:MS_1000472c
obo:MS_1000474c

Dionex instrument modelc # Classes

URI http://purl.obolibrary.org/obo/MS_1000491
Super-classes obo:MS_1000031c

Thermo Electron instrument modelc # Classes

URI http://purl.obolibrary.org/obo/MS_1000492
Super-classes obo:MS_1000483c

Finnigan MAT instrument modelc # Classes

URI http://purl.obolibrary.org/obo/MS_1000493
Super-classes obo:MS_1000483c
Sub-classes obo:MS_1000175c
obo:MS_1000750c
obo:MS_1000176c
obo:MS_1000749c
obo:MS_1000173c
obo:MS_1000174c
obo:MS_1000172c
obo:MS_1000748c

Thermo Scientific instrument modelc # Classes

URI http://purl.obolibrary.org/obo/MS_1000494
Super-classes obo:MS_1000483c
Sub-classes obo:MS_1000644c
obo:MS_1000854c
obo:MS_1000743c
obo:MS_1003028c
obo:MS_1002732c
obo:MS_1000856c
obo:MS_1000447c
obo:MS_1000636c
obo:MS_1002417c
obo:MS_1000642c
obo:MS_1000450c
obo:MS_1000622c
obo:MS_1000638c
obo:MS_1002875c
obo:MS_1002877c
obo:MS_1000751c
obo:MS_1000556c
obo:MS_1002418c
obo:MS_1000645c
obo:MS_1001510c
obo:MS_1003029c
obo:MS_1001908c
obo:MS_1000647c
obo:MS_1000449c
obo:MS_1001909c
obo:MS_1000555c
obo:MS_1000639c
obo:MS_1002525c
obo:MS_1000649c
obo:MS_1000557c
obo:MS_1000637c
obo:MS_1002523c
obo:MS_1002634c
obo:MS_1000643c
obo:MS_1002835c
obo:MS_1001911c
obo:MS_1001742c
obo:MS_1000641c
obo:MS_1000648c
obo:MS_1002416c
obo:MS_1000623c
obo:MS_1000448c
obo:MS_1000646c
obo:MS_1000640c
obo:MS_1000855c
obo:MS_1002876c
obo:MS_1002874c
obo:MS_1001910c
obo:MS_1002526c
obo:MS_1000635c
obo:MS_1002419c

Applied Biosystems instrument modelc # Classes

URI http://purl.obolibrary.org/obo/MS_1000495
Super-classes obo:MS_1000031c
Sub-classes obo:MS_1000203c
obo:MS_1000658c
obo:MS_1000140c
obo:MS_1000204c

instrument attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1000496
Super-classes obo:MS_1000547c
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000463c
Sub-classes obo:MS_1000236c
obo:MS_1000529c
obo:MS_1000032c

zoom scanc # Classes

URI http://purl.obolibrary.org/obo/MS_1000497
Super-classes obo:MS_1000503c

full scanc # Classes

URI http://purl.obolibrary.org/obo/MS_1000498
Description

This former purgatory term was made obsolete.

spectrum attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1000499
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000442c
Sub-classes obo:MS_1003061c
obo:MS_1003086c
obo:MS_1000796c
obo:MS_1003071c
obo:MS_1000577c
obo:MS_1000511c
obo:MS_1003063c
obo:MS_1003062c
obo:MS_1003085c
obo:MS_1003064c

scan window upper limitc # Classes

URI http://purl.obolibrary.org/obo/MS_1000500
Super-classes obo:MS_1000549c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000040c

scan window lower limitc # Classes

URI http://purl.obolibrary.org/obo/MS_1000501
Super-classes obo:MS_1000549c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000040c

dwell timec # Classes

URI http://purl.obolibrary.org/obo/MS_1000502
Super-classes obo:MS_1000503c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000010c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000031c

scan attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1000503
Super-classes obo:MS_1000547c
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000441c
Sub-classes obo:MS_1000616c
obo:MS_1002527c
obo:MS_1000826c
obo:MS_1000016c
obo:MS_1000927c
obo:MS_1000800c
obo:MS_1000502c
obo:MS_1000015c
obo:MS_1002892c
obo:MS_1000497c
obo:MS_1002082c
obo:MS_1000011c
obo:MS_1000512c
obo:MS_1003057c
obo:MS_1000880c
obo:MS_1002083c
obo:MS_1000803c

base peak m/zc # Classes

URI http://purl.obolibrary.org/obo/MS_1000504
Super-classes obo:MS_1003058c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000040c

base peak intensityc # Classes

URI http://purl.obolibrary.org/obo/MS_1000505
Super-classes obo:MS_1003058c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000269c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000131c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000814c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000132c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000905c

ion rolec # Classes

URI http://purl.obolibrary.org/obo/MS_1000506
Description

This child of the former purgatory term ion was made obsolete.

ion propertyc # Classes

URI http://purl.obolibrary.org/obo/MS_1000507
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1002806c
Sub-classes obo:MS_1000041c

ion chemical typec # Classes

URI http://purl.obolibrary.org/obo/MS_1000508
Description

This child of the former purgatory term ion was made obsolete.

activation energyc # Classes

URI http://purl.obolibrary.org/obo/MS_1000509
Super-classes obo:MS_1000510c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000266c

precursor activation attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1000510
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000456c
Sub-classes obo:MS_1000138c
obo:MS_1000045c
obo:MS_1000245c
obo:MS_1000869c
obo:MS_1000412c
obo:MS_1001944c
obo:MS_1000509c
obo:MS_1000419c
obo:MS_1002680c

ms levelc # Classes

URI http://purl.obolibrary.org/obo/MS_1000511
Super-classes obo:MS_1000499c

filter stringc # Classes

URI http://purl.obolibrary.org/obo/MS_1000512
Super-classes obo:MS_1000503c

binary data arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1000513
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000442c
http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000625c
Sub-classes obo:MS_1000786c
obo:MS_1000514c
obo:MS_1000820c
obo:MS_1002744c
obo:MS_1000821c
obo:MS_1002743c
obo:MS_1000617c
obo:MS_1000516c
obo:MS_1002893c
obo:MS_1002745c
obo:MS_1002529c
obo:MS_1000517c
obo:MS_1000515c
obo:MS_1002478c
obo:MS_1000822c
obo:MS_1002530c
obo:MS_1002742c
obo:MS_1000595c

m/z arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1000514
Super-classes obo:MS_1000513c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000040c

intensity arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1000515
Super-classes obo:MS_1000513c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000131c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000814c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000905c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000132c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000269c

charge arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1000516
Super-classes obo:MS_1000513c

signal to noise arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1000517
Super-classes obo:MS_1000513c

binary data typec # Classes

URI http://purl.obolibrary.org/obo/MS_1000518
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000625c
http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000442c
Sub-classes obo:MS_1001479c
obo:MS_1000520c
obo:MS_1000519c
obo:MS_1000523c
obo:MS_1000522c
obo:MS_1000521c

32-bit integerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000519
Super-classes obo:MS_1000518c

16-bit floatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000520
Super-classes obo:MS_1000518c

32-bit floatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000521
Super-classes obo:MS_1000518c

64-bit integerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000522
Super-classes obo:MS_1000518c

64-bit floatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000523
Super-classes obo:MS_1000518c

data file contentc # Classes

URI http://purl.obolibrary.org/obo/MS_1000524
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000577c
Sub-classes obo:MS_1000620c
obo:MS_1000805c
obo:MS_1000294c
obo:MS_1000810c
obo:MS_1000806c
obo:MS_1000804c
obo:MS_1000811c

spectrum representationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000525
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000442c
Sub-classes obo:MS_1000128c
obo:MS_1000127c

Waters raw formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000526
Super-classes obo:MS_1000560c

highest observed m/zc # Classes

URI http://purl.obolibrary.org/obo/MS_1000527
Super-classes obo:MS_1000808c
obo:MS_1003058c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000040c

lowest observed m/zc # Classes

URI http://purl.obolibrary.org/obo/MS_1000528
Super-classes obo:MS_1000808c
obo:MS_1003058c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000040c

instrument serial numberc # Classes

URI http://purl.obolibrary.org/obo/MS_1000529
Super-classes obo:MS_1000496c

file format conversionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000530
Super-classes obo:MS_1000452c
Sub-classes obo:MS_1002839c
obo:MS_1000545c
obo:MS_1000546c
obo:MS_1000544c
obo:MS_1000741c

softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1000531
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_0000000c
Sub-classes obo:MS_1000799c
obo:MS_1001949c
obo:MS_1001456c
obo:MS_1000692c
obo:MS_1000873c
obo:MS_1001457c
obo:MS_1000690c
obo:MS_1000871c
obo:MS_1001557c
obo:MS_1000694c
obo:MS_1002383c
obo:MS_1001798c
obo:MS_1001455c
obo:MS_1000691c
obo:MS_1000689c
obo:MS_1001139c
obo:MS_1000693c

Xcaliburc # Classes

URI http://purl.obolibrary.org/obo/MS_1000532
Super-classes obo:MS_1001457c
obo:MS_1001456c
obo:MS_1000693c
obo:MS_1001455c

Bioworksc # Classes

URI http://purl.obolibrary.org/obo/MS_1000533
Super-classes obo:MS_1001457c
obo:MS_1001456c
obo:MS_1000693c

MassLynxc # Classes

URI http://purl.obolibrary.org/obo/MS_1000534
Super-classes obo:MS_1001455c
obo:MS_1000694c
obo:MS_1001457c
obo:MS_1001456c

FlexAnalysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1000535
Super-classes obo:MS_1000692c
obo:MS_1001457c
obo:MS_1001456c

Data Explorerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000536
Super-classes obo:MS_1001456c
obo:MS_1001455c
obo:MS_1001457c
obo:MS_1000691c

4700 Explorerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000537
Super-classes obo:MS_1001457c
obo:MS_1000691c
obo:MS_1001456c
obo:MS_1001455c

massWolfc # Classes

URI http://purl.obolibrary.org/obo/MS_1000538
Super-classes obo:MS_1001457c

Voyager Biospectrometry Workstation Systemc # Classes

URI http://purl.obolibrary.org/obo/MS_1000539
Super-classes obo:MS_1001455c
obo:MS_1001457c
obo:MS_1000691c
obo:MS_1001456c

FlexControlc # Classes

URI http://purl.obolibrary.org/obo/MS_1000540
Super-classes obo:MS_1001455c
obo:MS_1000692c

ReAdWc # Classes

URI http://purl.obolibrary.org/obo/MS_1000541
Super-classes obo:MS_1001457c

MzStarc # Classes

URI http://purl.obolibrary.org/obo/MS_1000542
Super-classes obo:MS_1001457c

data processing actionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000543
Super-classes obo:MS_1000452c
Sub-classes obo:MS_1000033c
obo:MS_1000034c
obo:MS_1000593c
obo:MS_1001486c
obo:MS_1001485c
obo:MS_1000745c
obo:MS_1000592c
obo:MS_1000780c
obo:MS_1000778c
obo:MS_1001484c
obo:MS_1000035c

Conversion to mzMLc # Classes

URI http://purl.obolibrary.org/obo/MS_1000544
Super-classes obo:MS_1000530c

Conversion to mzXMLc # Classes

URI http://purl.obolibrary.org/obo/MS_1000545
Super-classes obo:MS_1000530c

Conversion to mzDatac # Classes

URI http://purl.obolibrary.org/obo/MS_1000546
Super-classes obo:MS_1000530c

object attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1000547
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001458c
Sub-classes obo:MS_1000548c
obo:MS_1000792c
obo:MS_1000585c
obo:MS_1000831c
obo:MS_1000503c
obo:MS_1000549c
obo:MS_1000857c
obo:MS_1000455c
obo:MS_1002039c
obo:MS_1000496c
obo:MS_1000808c

sample attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1000548
Super-classes obo:MS_1000547c
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000457c
Sub-classes obo:MS_1002602c
obo:MS_1000005c
obo:MS_1002038c
obo:MS_1000003c
obo:MS_1000006c
obo:MS_1000001c
obo:MS_1000002c
obo:MS_1000004c
obo:MS_1000053c

selection window attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1000549
Super-classes obo:MS_1000547c
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000441c
Sub-classes obo:MS_1000500c
obo:MS_1000501c

time unitc # Classes

URI http://purl.obolibrary.org/obo/MS_1000550
Description

This term was made obsolete because it was redundant with the Unit Ontology term time unit (UO:0000003).

Analystc # Classes

URI http://purl.obolibrary.org/obo/MS_1000551
Super-classes obo:MS_1001455c
obo:MS_1000690c
obo:MS_1001457c
obo:MS_1001456c

maldi spot identifierc # Classes

URI http://purl.obolibrary.org/obo/MS_1000552
Description

This former purgatory term was made obsolete.

Trapperc # Classes

URI http://purl.obolibrary.org/obo/MS_1000553
Super-classes obo:MS_1001457c

LCQ Decac # Classes

URI http://purl.obolibrary.org/obo/MS_1000554
Super-classes obo:MS_1000125c

LTQ Orbitrap Discoveryc # Classes

URI http://purl.obolibrary.org/obo/MS_1000555
Super-classes obo:MS_1000494c

LTQ Orbitrap XLc # Classes

URI http://purl.obolibrary.org/obo/MS_1000556
Super-classes obo:MS_1000494c

LTQ FT Ultrac # Classes

URI http://purl.obolibrary.org/obo/MS_1000557
Super-classes obo:MS_1000494c

GC Quantumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000558
Super-classes obo:MS_1000125c

spectrum typec # Classes

URI http://purl.obolibrary.org/obo/MS_1000559
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000442c
Sub-classes obo:MS_1000928c
obo:MS_1000294c
obo:MS_1000806c
obo:MS_1000804c
obo:MS_1000620c
obo:MS_1000805c

mass spectrometer file formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000560
Super-classes obo:MS_1001459c
Sub-classes obo:MS_1001481c
obo:MS_1000564c
obo:MS_1001062c
obo:MS_1000565c
obo:MS_1000816c
obo:MS_1002302c
obo:MS_1000742c
obo:MS_1001527c
obo:MS_1000613c
obo:MS_1000740c
obo:MS_1002838c
obo:MS_1002996c
obo:MS_1002966c
obo:MS_1002597c
obo:MS_1002817c
obo:MS_1000562c
obo:MS_1001560c
obo:MS_1002531c
obo:MS_1000567c
obo:MS_1001245c
obo:MS_1001463c
obo:MS_1003009c
obo:MS_1001369c
obo:MS_1000563c
obo:MS_1002385c
obo:MS_1001247c
obo:MS_1001881c
obo:MS_1000930c
obo:MS_1001466c
obo:MS_1000825c
obo:MS_1000584c
obo:MS_1000526c
obo:MS_1000566c
obo:MS_1001509c
obo:MS_1002900c
obo:MS_1000614c
obo:MS_1002441c
obo:MS_1000815c
obo:MS_1002899c
obo:MS_1001246c

data file checksum typec # Classes

URI http://purl.obolibrary.org/obo/MS_1000561
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000577c
Sub-classes obo:MS_1000569c
obo:MS_1000568c

ABI WIFF formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000562
Super-classes obo:MS_1000560c

Thermo RAW formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000563
Super-classes obo:MS_1000560c

PSI mzData formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000564
Super-classes obo:MS_1000560c

Micromass PKL formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000565
Super-classes obo:MS_1000560c

ISB mzXML formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000566
Super-classes obo:MS_1000560c

Bruker/Agilent YEP formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000567
Super-classes obo:MS_1000560c

MD5c # Classes

URI http://purl.obolibrary.org/obo/MS_1000568
Super-classes obo:MS_1000561c

SHA-1c # Classes

URI http://purl.obolibrary.org/obo/MS_1000569
Super-classes obo:MS_1000561c

spectra combinationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000570
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000442c
Sub-classes obo:MS_1000573c
obo:MS_1000795c
obo:MS_1000575c
obo:MS_1000571c

sum of spectrac # Classes

URI http://purl.obolibrary.org/obo/MS_1000571
Super-classes obo:MS_1000570c

binary data compression typec # Classes

URI http://purl.obolibrary.org/obo/MS_1000572
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000442c
http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000625c
Sub-classes obo:MS_1000574c
obo:MS_1002313c
obo:MS_1002746c
obo:MS_1002314c
obo:MS_1002747c
obo:MS_1000576c
obo:MS_1003088c
obo:MS_1002312c
obo:MS_1003089c
obo:MS_1002748c
obo:MS_1003090c

median of spectrac # Classes

URI http://purl.obolibrary.org/obo/MS_1000573
Super-classes obo:MS_1000570c

zlib compressionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000574
Super-classes obo:MS_1000572c

mean of spectrac # Classes

URI http://purl.obolibrary.org/obo/MS_1000575
Super-classes obo:MS_1000570c

no compressionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000576
Super-classes obo:MS_1000572c

source data filec # Classes

URI http://purl.obolibrary.org/obo/MS_1000577
Super-classes obo:MS_1000499c
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001458c
Sub-classes obo:MS_1003083c
obo:MS_1003084c

LCQ Fleetc # Classes

URI http://purl.obolibrary.org/obo/MS_1000578
Super-classes obo:MS_1000125c

MS1 spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000579
Super-classes obo:MS_1000294c
Sub-classes obo:MS_1000789c

MSn spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000580
Super-classes obo:MS_1000294c
Sub-classes obo:MS_1000790c

CRM spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000581
Super-classes obo:MS_1000294c

SIM spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000582
Super-classes obo:MS_1000294c

SRM spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000583
Super-classes obo:MS_1000294c

mzML formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000584
Super-classes obo:MS_1000560c

contact attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1000585
Super-classes obo:MS_1000547c
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_0000000c
Sub-classes obo:MS_1001755c
obo:MS_1000589c
obo:MS_1000588c
obo:MS_1001757c
obo:MS_1000587c
obo:MS_1001756c
obo:MS_1001266c
obo:MS_1000586c
obo:MS_1000590c
obo:MS_1002033c

contact namec # Classes

URI http://purl.obolibrary.org/obo/MS_1000586
Super-classes obo:MS_1000585c

contact addressc # Classes

URI http://purl.obolibrary.org/obo/MS_1000587
Super-classes obo:MS_1000585c

contact URLc # Classes

URI http://purl.obolibrary.org/obo/MS_1000588
Super-classes obo:MS_1000585c

contact emailc # Classes

URI http://purl.obolibrary.org/obo/MS_1000589
Super-classes obo:MS_1000585c

contact affiliationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000590
Super-classes obo:MS_1000585c

MzWiffc # Classes

URI http://purl.obolibrary.org/obo/MS_1000591
Super-classes obo:MS_1001457c

smoothingc # Classes

URI http://purl.obolibrary.org/obo/MS_1000592
Super-classes obo:MS_1000543c
Sub-classes obo:MS_1000785c
obo:MS_1000783c
obo:MS_1001997c
obo:MS_1000782c
obo:MS_1000784c

baseline reductionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000593
Super-classes obo:MS_1000543c
Sub-classes obo:MS_1001996c
obo:MS_1001995c
obo:MS_1001994c

low intensity data point removalc # Classes

URI http://purl.obolibrary.org/obo/MS_1000594
Super-classes obo:MS_1001486c

time arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1000595
Super-classes obo:MS_1000513c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000031c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000010c

measurement methodc # Classes

URI http://purl.obolibrary.org/obo/MS_1000596
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001458c
Sub-classes obo:MS_1000012c
obo:MS_1000206c
obo:MS_1000205c

ion optics typec # Classes

URI http://purl.obolibrary.org/obo/MS_1000597
Super-classes obo:MS_1000462c
Sub-classes obo:MS_1000320c
obo:MS_1000221c
obo:MS_1000246c
obo:MS_1000286c
obo:MS_1000307c
obo:MS_1000275c
obo:MS_1000311c
obo:MS_1000281c
obo:MS_1000300c
obo:MS_1000310c
obo:MS_1000309c

electron transfer dissociationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000598
Super-classes obo:MS_1000044c

pulsed q dissociationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000599
Super-classes obo:MS_1000044c

Proteiosc # Classes

URI http://purl.obolibrary.org/obo/MS_1000600
Super-classes obo:MS_1001457c
obo:MS_1001456c

ProteinLynx Global Serverc # Classes

URI http://purl.obolibrary.org/obo/MS_1000601
Super-classes obo:MS_1001456c
obo:MS_1000694c
obo:MS_1001457c

Shimadzu MALDI-TOF instrument modelc # Classes

URI http://purl.obolibrary.org/obo/MS_1000602
Super-classes obo:MS_1000124c
Sub-classes obo:MS_1000608c
obo:MS_1000609c
obo:MS_1002382c
obo:MS_1000607c
obo:MS_1000611c
obo:MS_1000612c
obo:MS_1000610c

Shimadzu Scientific Instruments instrument modelc # Classes

URI http://purl.obolibrary.org/obo/MS_1000603
Super-classes obo:MS_1000124c
Sub-classes obo:MS_1000604c
obo:MS_1000606c
obo:MS_1002999c
obo:MS_1003001c
obo:MS_1002998c
obo:MS_1003000c
obo:MS_1003002c
obo:MS_1000605c
obo:MS_1003003c

LCMS-IT-TOFc # Classes

URI http://purl.obolibrary.org/obo/MS_1000604
Super-classes obo:MS_1000603c

LCMS-2010EVc # Classes

URI http://purl.obolibrary.org/obo/MS_1000605
Super-classes obo:MS_1000603c

LCMS-2010Ac # Classes

URI http://purl.obolibrary.org/obo/MS_1000606
Super-classes obo:MS_1000603c

AXIMA CFR MALDI-TOFc # Classes

URI http://purl.obolibrary.org/obo/MS_1000607
Super-classes obo:MS_1000602c

AXIMA-QITc # Classes

URI http://purl.obolibrary.org/obo/MS_1000608
Super-classes obo:MS_1000602c

AXIMA-CFR plusc # Classes

URI http://purl.obolibrary.org/obo/MS_1000609
Super-classes obo:MS_1000602c

AXIMA Performance MALDI-TOF/TOFc # Classes

URI http://purl.obolibrary.org/obo/MS_1000610
Super-classes obo:MS_1000602c

AXIMA Confidence MALDI-TOFc # Classes

URI http://purl.obolibrary.org/obo/MS_1000611
Super-classes obo:MS_1000602c

AXIMA Assurance Linear MALDI-TOFc # Classes

URI http://purl.obolibrary.org/obo/MS_1000612
Super-classes obo:MS_1000602c

DTA formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000613
Super-classes obo:MS_1000560c

ProteinLynx Global Server mass spectrum XML formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000614
Super-classes obo:MS_1000560c

ProteoWizard softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1000615
Super-classes obo:MS_1001457c
obo:MS_1001456c
Sub-classes obo:MS_1002205c
obo:MS_1002206c
obo:MS_1002208c
obo:MS_1002209c
obo:MS_1002207c

preset scan configurationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000616
Super-classes obo:MS_1000503c

wavelength arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1000617
Super-classes obo:MS_1000513c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000018c

highest observed wavelengthc # Classes

URI http://purl.obolibrary.org/obo/MS_1000618
Super-classes obo:MS_1000808c
obo:MS_1003058c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000018c

lowest observed wavelengthc # Classes

URI http://purl.obolibrary.org/obo/MS_1000619
Super-classes obo:MS_1000808c
obo:MS_1003058c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000018c

PDA spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000620
Description

This term was made obsolete because it was replaced by absorption spectrum (MS:1000806).
Super-classes obo:MS_1000524c
obo:MS_1000559c

photodiode array detectorc # Classes

URI http://purl.obolibrary.org/obo/MS_1000621
Super-classes obo:MS_1000345c
Sub-classes obo:MS_1000818c

Surveyor PDAc # Classes

URI http://purl.obolibrary.org/obo/MS_1000622
Super-classes obo:MS_1000494c

Accela PDAc # Classes

URI http://purl.obolibrary.org/obo/MS_1000623
Super-classes obo:MS_1000494c

inductive detectorc # Classes

URI http://purl.obolibrary.org/obo/MS_1000624
Super-classes obo:MS_1000026c

chromatogramc # Classes

URI http://purl.obolibrary.org/obo/MS_1000625
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001458c

chromatogram typec # Classes

URI http://purl.obolibrary.org/obo/MS_1000626
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000625c
Sub-classes obo:MS_1000810c
obo:MS_1000811c
obo:MS_1003019c
obo:MS_1003020c

selected ion current chromatogramc # Classes

URI http://purl.obolibrary.org/obo/MS_1000627
Super-classes obo:MS_1000810c

basepeak chromatogramc # Classes

URI http://purl.obolibrary.org/obo/MS_1000628
Super-classes obo:MS_1000810c

low intensity thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1000629
Super-classes obo:MS_1000630c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000905c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000132c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000814c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000131c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000269c

data processing parameterc # Classes

URI http://purl.obolibrary.org/obo/MS_1000630
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001458c
Sub-classes obo:MS_1001885c
obo:MS_1000631c
obo:MS_1000629c
obo:MS_1000788c
obo:MS_1000787c
obo:MS_1002435c
obo:MS_1000747c

high intensity thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1000631
Super-classes obo:MS_1000630c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000269c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000132c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000905c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000814c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000131c

Q-Tof Premierc # Classes

URI http://purl.obolibrary.org/obo/MS_1000632
Super-classes obo:MS_1000126c

possible charge statec # Classes

URI http://purl.obolibrary.org/obo/MS_1000633
Super-classes obo:MS_1000455c

DSQc # Classes

URI http://purl.obolibrary.org/obo/MS_1000634
Super-classes obo:MS_1000125c

ITQ 700c # Classes

URI http://purl.obolibrary.org/obo/MS_1000635
Super-classes obo:MS_1000494c

ITQ 900c # Classes

URI http://purl.obolibrary.org/obo/MS_1000636
Super-classes obo:MS_1000494c

ITQ 1100c # Classes

URI http://purl.obolibrary.org/obo/MS_1000637
Super-classes obo:MS_1000494c

LTQ XL ETDc # Classes

URI http://purl.obolibrary.org/obo/MS_1000638
Super-classes obo:MS_1000494c

LTQ Orbitrap XL ETDc # Classes

URI http://purl.obolibrary.org/obo/MS_1000639
Super-classes obo:MS_1000494c

DFSc # Classes

URI http://purl.obolibrary.org/obo/MS_1000640
Super-classes obo:MS_1000494c

DSQ IIc # Classes

URI http://purl.obolibrary.org/obo/MS_1000641
Super-classes obo:MS_1000494c

MALDI LTQ XLc # Classes

URI http://purl.obolibrary.org/obo/MS_1000642
Super-classes obo:MS_1000494c

MALDI LTQ Orbitrapc # Classes

URI http://purl.obolibrary.org/obo/MS_1000643
Super-classes obo:MS_1000494c

TSQ Quantum Accessc # Classes

URI http://purl.obolibrary.org/obo/MS_1000644
Super-classes obo:MS_1000494c

Element XRc # Classes

URI http://purl.obolibrary.org/obo/MS_1000645
Super-classes obo:MS_1000494c

Element 2c # Classes

URI http://purl.obolibrary.org/obo/MS_1000646
Super-classes obo:MS_1000494c

Element GDc # Classes

URI http://purl.obolibrary.org/obo/MS_1000647
Super-classes obo:MS_1000494c

Exactivec # Classes

URI http://purl.obolibrary.org/obo/MS_1000649
Super-classes obo:MS_1000494c

Proteome Discovererc # Classes

URI http://purl.obolibrary.org/obo/MS_1000650
Super-classes obo:MS_1000693c
obo:MS_1001457c
obo:MS_1001456c

3200 QTRAPc # Classes

URI http://purl.obolibrary.org/obo/MS_1000651
Super-classes obo:MS_1000121c

4800 Plus MALDI TOF/TOFc # Classes

URI http://purl.obolibrary.org/obo/MS_1000652
Super-classes obo:MS_1000121c

API 3200c # Classes

URI http://purl.obolibrary.org/obo/MS_1000653
Super-classes obo:MS_1000121c

API 5000c # Classes

URI http://purl.obolibrary.org/obo/MS_1000654
Super-classes obo:MS_1000121c

QSTAR Elitec # Classes

URI http://purl.obolibrary.org/obo/MS_1000655
Super-classes obo:MS_1000121c

QSTAR Pulsarc # Classes

URI http://purl.obolibrary.org/obo/MS_1000656
Super-classes obo:MS_1000121c

QSTAR XLc # Classes

URI http://purl.obolibrary.org/obo/MS_1000657
Super-classes obo:MS_1000121c

4800 Proteomics Analyzerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000658
Super-classes obo:MS_1000495c

4000 Series Explorer Softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1000659
Super-classes obo:MS_1001456c
obo:MS_1001455c
obo:MS_1000690c
obo:MS_1001457c

GPS Explorerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000661
Super-classes obo:MS_1001455c
obo:MS_1000690c
obo:MS_1001457c
obo:MS_1001456c

LightSight Softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1000662
Super-classes obo:MS_1000690c
obo:MS_1001457c
obo:MS_1001456c

ProteinPilot Softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1000663
Super-classes obo:MS_1000690c
obo:MS_1001457c
obo:MS_1001456c

TissueView Softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1000664
Super-classes obo:MS_1001456c
obo:MS_1000690c
obo:MS_1001457c

MarkerView Softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1000665
Super-classes obo:MS_1000690c
obo:MS_1001457c
obo:MS_1001456c

MRMPilot Softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1000666
Super-classes obo:MS_1001457c
obo:MS_1001456c
obo:MS_1000690c

BioAnalystc # Classes

URI http://purl.obolibrary.org/obo/MS_1000667
Super-classes obo:MS_1000690c
obo:MS_1001457c
obo:MS_1001456c

Pro IDc # Classes

URI http://purl.obolibrary.org/obo/MS_1000668
Super-classes obo:MS_1000690c
obo:MS_1001457c
obo:MS_1001456c

Pro ICATc # Classes

URI http://purl.obolibrary.org/obo/MS_1000669
Super-classes obo:MS_1001456c
obo:MS_1000690c
obo:MS_1001457c

Pro Quantc # Classes

URI http://purl.obolibrary.org/obo/MS_1000670
Super-classes obo:MS_1001456c
obo:MS_1000690c
obo:MS_1001457c

Pro BLASTc # Classes

URI http://purl.obolibrary.org/obo/MS_1000671
Super-classes obo:MS_1001456c
obo:MS_1000690c
obo:MS_1001457c

Cliquidc # Classes

URI http://purl.obolibrary.org/obo/MS_1000672
Super-classes obo:MS_1000690c

MIDAS Workflow Designerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000673
Super-classes obo:MS_1000690c

MultiQuantc # Classes

URI http://purl.obolibrary.org/obo/MS_1000674
Super-classes obo:MS_1000690c
obo:MS_1001457c
obo:MS_1001456c

6220 Time-of-Flight LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1000675
Super-classes obo:MS_1000490c

6510 Quadrupole Time-of-Flight LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1000676
Super-classes obo:MS_1000490c

6520A Quadrupole Time-of-Flight LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1000677
Super-classes obo:MS_1000490c

MassHunter Data Acquisitionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000678
Super-classes obo:MS_1000689c
obo:MS_1001455c

MassHunter Easy Accessc # Classes

URI http://purl.obolibrary.org/obo/MS_1000679
Super-classes obo:MS_1000689c
obo:MS_1001455c

MassHunter Qualitative Analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1000680
Super-classes obo:MS_1001457c
obo:MS_1001456c
obo:MS_1000689c

MassHunter Quantitative Analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1000681
Super-classes obo:MS_1001457c
obo:MS_1001456c
obo:MS_1000689c

MassHunter Metabolite IDc # Classes

URI http://purl.obolibrary.org/obo/MS_1000682
Super-classes obo:MS_1001456c
obo:MS_1000689c
obo:MS_1001457c

MassHunter BioConfirmc # Classes

URI http://purl.obolibrary.org/obo/MS_1000683
Super-classes obo:MS_1001456c
obo:MS_1000689c
obo:MS_1001457c

Genespring MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1000684
Super-classes obo:MS_1001457c
obo:MS_1001456c
obo:MS_1000689c

MassHunter Mass Profilerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000685
Super-classes obo:MS_1001457c
obo:MS_1001456c
obo:MS_1000689c

METLINc # Classes

URI http://purl.obolibrary.org/obo/MS_1000686
Super-classes obo:MS_1001457c
obo:MS_1001456c
obo:MS_1000689c

Spectrum Mill for MassHunter Workstationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000687
Super-classes obo:MS_1001457c
obo:MS_1001456c
obo:MS_1000689c

6300 Series Ion Trap Data Analysis Softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1000688
Super-classes obo:MS_1001456c
obo:MS_1000689c
obo:MS_1001455c
obo:MS_1001457c

Agilent softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1000689
Super-classes obo:MS_1000531c
Sub-classes obo:MS_1000682c
obo:MS_1000688c
obo:MS_1000683c
obo:MS_1000679c
obo:MS_1000678c
obo:MS_1000681c
obo:MS_1000684c
obo:MS_1000685c
obo:MS_1000687c
obo:MS_1000680c
obo:MS_1000686c

SCIEX softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1000690
Super-classes obo:MS_1000531c
Sub-classes obo:MS_1001483c
obo:MS_1000665c
obo:MS_1000672c
obo:MS_1000661c
obo:MS_1000667c
obo:MS_1000663c
obo:MS_1000673c
obo:MS_1000674c
obo:MS_1000551c
obo:MS_1000662c
obo:MS_1000668c
obo:MS_1000670c
obo:MS_1000669c
obo:MS_1000659c
obo:MS_1000666c
obo:MS_1000671c
obo:MS_1000664c

Applied Biosystems softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1000691
Super-classes obo:MS_1000531c
Sub-classes obo:MS_1000537c
obo:MS_1000539c
obo:MS_1000536c

Bruker softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1000692
Super-classes obo:MS_1000531c
Sub-classes obo:MS_1000737c
obo:MS_1000724c
obo:MS_1000734c
obo:MS_1000732c
obo:MS_1000715c
obo:MS_1000711c
obo:MS_1000717c
obo:MS_1000730c
obo:MS_1000716c
obo:MS_1000722c
obo:MS_1000739c
obo:MS_1000710c
obo:MS_1000720c
obo:MS_1000708c
obo:MS_1000729c
obo:MS_1000731c
obo:MS_1000719c
obo:MS_1000709c
obo:MS_1000535c
obo:MS_1000714c
obo:MS_1000727c
obo:MS_1000735c
obo:MS_1000738c
obo:MS_1000728c
obo:MS_1000725c
obo:MS_1000817c
obo:MS_1000723c
obo:MS_1000540c
obo:MS_1000726c
obo:MS_1000721c
obo:MS_1000733c
obo:MS_1000718c
obo:MS_1001487c
obo:MS_1000713c
obo:MS_1000707c
obo:MS_1000712c
obo:MS_1000736c
obo:MS_1000706c

Thermo Finnigan softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1000693
Super-classes obo:MS_1000531c
Sub-classes obo:MS_1000650c
obo:MS_1000533c
obo:MS_1001912c
obo:MS_1000532c

Waters softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1000694
Super-classes obo:MS_1000531c
Sub-classes obo:MS_1001795c
obo:MS_1000534c
obo:MS_1000601c
obo:MS_1001796c

apex ultrac # Classes

URI http://purl.obolibrary.org/obo/MS_1000695
Super-classes obo:MS_1001556c

autoflex III smartbeamc # Classes

URI http://purl.obolibrary.org/obo/MS_1000696
Super-classes obo:MS_1001534c

Bruker Daltonics HCT Seriesc # Classes

URI http://purl.obolibrary.org/obo/MS_1000697
Super-classes obo:MS_1000122c
Sub-classes obo:MS_1000161c
obo:MS_1000698c
obo:MS_1000699c
obo:MS_1000160c
obo:MS_1000700c

HCTultrac # Classes

URI http://purl.obolibrary.org/obo/MS_1000698
Super-classes obo:MS_1000697c

HCTultra PTMc # Classes

URI http://purl.obolibrary.org/obo/MS_1000699
Super-classes obo:MS_1000697c

HCTultra ETD IIc # Classes

URI http://purl.obolibrary.org/obo/MS_1000700
Super-classes obo:MS_1000697c

microflex LTc # Classes

URI http://purl.obolibrary.org/obo/MS_1000701
Super-classes obo:MS_1001534c

micrOTOFc # Classes

URI http://purl.obolibrary.org/obo/MS_1000702
Super-classes obo:MS_1001536c

micrOTOF-Qc # Classes

URI http://purl.obolibrary.org/obo/MS_1000703
Super-classes obo:MS_1001536c

micrOTOF-Q IIc # Classes

URI http://purl.obolibrary.org/obo/MS_1000704
Super-classes obo:MS_1001536c

ultraflex III TOF/TOFc # Classes

URI http://purl.obolibrary.org/obo/MS_1000705
Super-classes obo:MS_1001534c

apexControlc # Classes

URI http://purl.obolibrary.org/obo/MS_1000706
Super-classes obo:MS_1001455c
obo:MS_1000692c

BioToolsc # Classes

URI http://purl.obolibrary.org/obo/MS_1000707
Super-classes obo:MS_1001457c
obo:MS_1001456c
obo:MS_1000692c

CLINPROTc # Classes

URI http://purl.obolibrary.org/obo/MS_1000708
Super-classes obo:MS_1000692c
obo:MS_1001457c
obo:MS_1001456c

CLINPROT microc # Classes

URI http://purl.obolibrary.org/obo/MS_1000709
Super-classes obo:MS_1000692c
obo:MS_1001457c
obo:MS_1001456c

CLINPROT robotc # Classes

URI http://purl.obolibrary.org/obo/MS_1000710
Super-classes obo:MS_1000692c

ClinProToolsc # Classes

URI http://purl.obolibrary.org/obo/MS_1000711
Super-classes obo:MS_1000692c

Compassc # Classes

URI http://purl.obolibrary.org/obo/MS_1000712
Super-classes obo:MS_1001457c
obo:MS_1001456c
obo:MS_1000692c

Compass for HCT/esquirec # Classes

URI http://purl.obolibrary.org/obo/MS_1000713
Super-classes obo:MS_1001457c
obo:MS_1001456c
obo:MS_1000692c

Compass for micrOTOFc # Classes

URI http://purl.obolibrary.org/obo/MS_1000714
Super-classes obo:MS_1001456c
obo:MS_1000692c
obo:MS_1001457c

Compass OpenAccessc # Classes

URI http://purl.obolibrary.org/obo/MS_1000715
Super-classes obo:MS_1000692c
obo:MS_1001457c
obo:MS_1001456c

Compass Security Packc # Classes

URI http://purl.obolibrary.org/obo/MS_1000716
Super-classes obo:MS_1000692c

CompassXportc # Classes

URI http://purl.obolibrary.org/obo/MS_1000717
Super-classes obo:MS_1000692c
obo:MS_1001457c

CompassXtractc # Classes

URI http://purl.obolibrary.org/obo/MS_1000718
Super-classes obo:MS_1001457c
obo:MS_1000692c

DataAnalysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1000719
Super-classes obo:MS_1000692c
obo:MS_1001457c
obo:MS_1001456c

dpControlc # Classes

URI http://purl.obolibrary.org/obo/MS_1000720
Super-classes obo:MS_1001455c
obo:MS_1000692c

esquireControlc # Classes

URI http://purl.obolibrary.org/obo/MS_1000721
Super-classes obo:MS_1001455c
obo:MS_1000692c

flexImagingc # Classes

URI http://purl.obolibrary.org/obo/MS_1000722
Super-classes obo:MS_1000692c
obo:MS_1001457c
obo:MS_1001456c

GenoToolsc # Classes

URI http://purl.obolibrary.org/obo/MS_1000724
Super-classes obo:MS_1000692c

HCTcontrolc # Classes

URI http://purl.obolibrary.org/obo/MS_1000725
Super-classes obo:MS_1001455c
obo:MS_1000692c

micrOTOFcontrolc # Classes

URI http://purl.obolibrary.org/obo/MS_1000726
Super-classes obo:MS_1001455c
obo:MS_1000692c

PolyToolsc # Classes

URI http://purl.obolibrary.org/obo/MS_1000727
Super-classes obo:MS_1000692c

ProfileAnalysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1000728
Super-classes obo:MS_1001456c
obo:MS_1000692c
obo:MS_1001457c

PROTEINEERc # Classes

URI http://purl.obolibrary.org/obo/MS_1000729
Super-classes obo:MS_1000692c

PROTEINEER dpc # Classes

URI http://purl.obolibrary.org/obo/MS_1000730
Super-classes obo:MS_1000692c

PROTEINEER fcc # Classes

URI http://purl.obolibrary.org/obo/MS_1000731
Super-classes obo:MS_1000692c

PROTEINEER spIIc # Classes

URI http://purl.obolibrary.org/obo/MS_1000732
Super-classes obo:MS_1000692c

PROTEINEER-LCc # Classes

URI http://purl.obolibrary.org/obo/MS_1000733
Super-classes obo:MS_1000692c

ProteinScapec # Classes

URI http://purl.obolibrary.org/obo/MS_1000734
Super-classes obo:MS_1000692c
obo:MS_1001456c

PureDiskc # Classes

URI http://purl.obolibrary.org/obo/MS_1000735
Super-classes obo:MS_1000692c

QuantAnalysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1000736
Super-classes obo:MS_1001457c
obo:MS_1001456c
obo:MS_1000692c

spControlc # Classes

URI http://purl.obolibrary.org/obo/MS_1000737
Super-classes obo:MS_1000692c
obo:MS_1001455c

TargetAnalysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1000738
Super-classes obo:MS_1000692c

WARP-LCc # Classes

URI http://purl.obolibrary.org/obo/MS_1000739
Super-classes obo:MS_1000692c
obo:MS_1001139c

parameter filec # Classes

URI http://purl.obolibrary.org/obo/MS_1000740
Super-classes obo:MS_1000560c

Conversion to dtac # Classes

URI http://purl.obolibrary.org/obo/MS_1000741
Super-classes obo:MS_1000530c

Bioworks SRF formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000742
Super-classes obo:MS_1000560c
obo:MS_1001040c

TSQ Quantum Ultra AMc # Classes

URI http://purl.obolibrary.org/obo/MS_1000743
Super-classes obo:MS_1000494c

selected ion m/zc # Classes

URI http://purl.obolibrary.org/obo/MS_1000744
Super-classes obo:MS_1000455c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000040c

retention time alignmentc # Classes

URI http://purl.obolibrary.org/obo/MS_1000745
Super-classes obo:MS_1000543c

high intensity data point removalc # Classes

URI http://purl.obolibrary.org/obo/MS_1000746
Super-classes obo:MS_1001486c

completion timec # Classes

URI http://purl.obolibrary.org/obo/MS_1000747
Super-classes obo:MS_1000630c

SSQ 7000c # Classes

URI http://purl.obolibrary.org/obo/MS_1000748
Super-classes obo:MS_1000493c

TSQ 7000c # Classes

URI http://purl.obolibrary.org/obo/MS_1000749
Super-classes obo:MS_1000493c

TSQc # Classes

URI http://purl.obolibrary.org/obo/MS_1000750
Super-classes obo:MS_1000493c

TSQ Quantum Ultrac # Classes

URI http://purl.obolibrary.org/obo/MS_1000751
Super-classes obo:MS_1000494c

TOPP softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1000752
Super-classes obo:MS_1001457c
obo:MS_1001456c
Sub-classes obo:MS_1003023c
obo:MS_1002187c
obo:MS_1002193c
obo:MS_1002191c
obo:MS_1002154c
obo:MS_1002157c
obo:MS_1002158c
obo:MS_1002172c
obo:MS_1002188c
obo:MS_1001831c
obo:MS_1002203c
obo:MS_1002156c
obo:MS_1002164c
obo:MS_1002178c
obo:MS_1002162c
obo:MS_1000764c
obo:MS_1000761c
obo:MS_1002179c
obo:MS_1002204c
obo:MS_1002171c
obo:MS_1000758c
obo:MS_1002190c
obo:MS_1000762c
obo:MS_1000759c
obo:MS_1000757c
obo:MS_1002134c
obo:MS_1002173c
obo:MS_1002161c
obo:MS_1002165c
obo:MS_1002189c
obo:MS_1000754c
obo:MS_1000756c
obo:MS_1000765c
obo:MS_1002137c
obo:MS_1002159c
obo:MS_1002195c
obo:MS_1002197c
obo:MS_1000760c
obo:MS_1002174c
obo:MS_1000755c
obo:MS_1002192c
obo:MS_1000763c
obo:MS_1002155c
obo:MS_1002194c
obo:MS_1002673c
obo:MS_1002196c
obo:MS_1000766c
obo:MS_1002147c
obo:MS_1002131c
obo:MS_1002160c
obo:MS_1002163c
obo:MS_1002180c
obo:MS_1000753c
obo:MS_1002129c

BaselineFilterc # Classes

URI http://purl.obolibrary.org/obo/MS_1000753
Super-classes obo:MS_1000752c

DBExporterc # Classes

URI http://purl.obolibrary.org/obo/MS_1000754
Super-classes obo:MS_1000752c

DBImporterc # Classes

URI http://purl.obolibrary.org/obo/MS_1000755
Super-classes obo:MS_1000752c

FileConverterc # Classes

URI http://purl.obolibrary.org/obo/MS_1000756
Super-classes obo:MS_1000752c

FileFilterc # Classes

URI http://purl.obolibrary.org/obo/MS_1000757
Super-classes obo:MS_1000752c

FileMergerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000758
Super-classes obo:MS_1000752c

InternalCalibrationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000759
Super-classes obo:MS_1000752c

MapAlignerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000760
Description

This term was made obsolete, because it is replaced by the terms under the 'TOPP map aligner' (MS:1002147) branch.
Super-classes obo:MS_1000752c

MapNormalizerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000761
Super-classes obo:MS_1000752c

NoiseFilterc # Classes

URI http://purl.obolibrary.org/obo/MS_1000762
Description

This term was made obsolete, because it is replaced by the terms under the 'TOPP noise filter' (MS:1002131) branch.
Super-classes obo:MS_1000752c

PeakPickerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000763
Description

This term was made obsolete, because it is replaced by the terms under the 'TOPP peak picker' (MS:1002134) branch.
Super-classes obo:MS_1000752c

Resamplerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000764
Super-classes obo:MS_1000752c

SpectraFilterc # Classes

URI http://purl.obolibrary.org/obo/MS_1000765
Description

This term was made obsolete, because it is replaced by the terms under the 'TOPP spectra filter' (MS:1002137) branch.
Super-classes obo:MS_1000752c

TOFCalibrationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000766
Super-classes obo:MS_1000752c

native spectrum identifier formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000767
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000577c
Sub-classes obo:MS_1000776c
obo:MS_1000770c
obo:MS_1001526c
obo:MS_1002303c
obo:MS_1000777c
obo:MS_1000774c
obo:MS_1000929c
obo:MS_1001480c
obo:MS_1001528c
obo:MS_1000771c
obo:MS_1000775c
obo:MS_1002898c
obo:MS_1001508c
obo:MS_1000824c
obo:MS_1000823c
obo:MS_1001532c
obo:MS_1001531c
obo:MS_1001559c
obo:MS_1000772c
obo:MS_1002532c
obo:MS_1000773c
obo:MS_1002818c
obo:MS_1001562c
obo:MS_1000769c
obo:MS_1000768c

Thermo nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000768
Super-classes obo:MS_1000767c

Waters nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000769
Super-classes obo:MS_1000767c

WIFF nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000770
Super-classes obo:MS_1000767c

Bruker/Agilent YEP nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000771
Super-classes obo:MS_1000767c

Bruker BAF nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000772
Super-classes obo:MS_1000767c

Bruker FID nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000773
Description

The nativeID must be the same as the source file ID.
Super-classes obo:MS_1000767c

multiple peak list nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000774
Description

Used for conversion of peak list files with multiple spectra, i.e. MGF, PKL, merged DTA files. Index is the spectrum number in the file, starting from 0.
Super-classes obo:MS_1000767c

single peak list nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000775
Description

The nativeID must be the same as the source file ID. Used for conversion of peak list files with one spectrum per file, typically folder of PKL or DTAs, each sourceFileRef is different.
Super-classes obo:MS_1000767c

scan number only nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000776
Description

Used for conversion from mzXML, or DTA folder where native scan numbers can be derived.
Super-classes obo:MS_1000767c

spectrum identifier nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000777
Description

Used for conversion from mzData. The spectrum id attribute is referenced.
Super-classes obo:MS_1000767c

charge state calculationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000778
Super-classes obo:MS_1000543c
Sub-classes obo:MS_1000779c

below precursor intensity dominance charge state calculationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000779
Super-classes obo:MS_1000778c

precursor recalculationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000780
Super-classes obo:MS_1000543c
Sub-classes obo:MS_1000781c

msPrefix precursor recalculationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000781
Super-classes obo:MS_1000780c

Savitzky-Golay smoothingc # Classes

URI http://purl.obolibrary.org/obo/MS_1000782
Super-classes obo:MS_1000592c

LOWESS smoothingc # Classes

URI http://purl.obolibrary.org/obo/MS_1000783
Super-classes obo:MS_1000592c

Gaussian smoothingc # Classes

URI http://purl.obolibrary.org/obo/MS_1000784
Super-classes obo:MS_1000592c

moving average smoothingc # Classes

URI http://purl.obolibrary.org/obo/MS_1000785
Super-classes obo:MS_1000592c

non-standard data arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1000786
Super-classes obo:MS_1000513c

inclusive low intensity thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1000787
Super-classes obo:MS_1000630c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000905c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000132c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000131c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000814c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000269c

inclusive high intensity thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1000788
Super-classes obo:MS_1000630c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000814c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000269c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000132c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000905c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000131c

enhanced multiply charged spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000789
Super-classes obo:MS_1000579c

time-delayed fragmentation spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000790
Super-classes obo:MS_1000580c

enhanced resolution scanc # Classes

URI http://purl.obolibrary.org/obo/MS_1000791
Description

This term was made obsolete because it was merged with zoom scan (MS:1000497).

isolation window attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1000792
Super-classes obo:MS_1000547c
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000441c
Sub-classes obo:MS_1000828c
obo:MS_1000794c
obo:MS_1000793c
obo:MS_1000829c
obo:MS_1000827c

isolation window upper limitc # Classes

URI http://purl.obolibrary.org/obo/MS_1000793
Description

This term was obsoleted in favour of using a target, lower, upper offset scheme. See terms 1000827-1000829.
Super-classes obo:MS_1000792c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000040c

isolation window lower limitc # Classes

URI http://purl.obolibrary.org/obo/MS_1000794
Description

This term was obsoleted in favour of using a target, lower, upper offset scheme. See terms 1000827-1000829.
Super-classes obo:MS_1000792c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000040c

no combinationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000795
Super-classes obo:MS_1000570c

spectrum titlec # Classes

URI http://purl.obolibrary.org/obo/MS_1000796
Description

This is the preferred storage place for the spectrum TITLE from an MGF peak list.
Super-classes obo:MS_1000499c
obo:MS_1001405c

peak list scansc # Classes

URI http://purl.obolibrary.org/obo/MS_1000797
Description

This is the preferred storage place for the spectrum SCANS attribute from an MGF peak list.
Super-classes obo:MS_1001405c
obo:MS_1003058c

peak list raw scansc # Classes

URI http://purl.obolibrary.org/obo/MS_1000798
Description

This is the preferred storage place for the spectrum RAWSCANS attribute from an MGF peak list.
Super-classes obo:MS_1001405c
obo:MS_1003058c

custom unreleased software toolc # Classes

URI http://purl.obolibrary.org/obo/MS_1000799
Super-classes obo:MS_1000531c

mass resolving powerc # Classes

URI http://purl.obolibrary.org/obo/MS_1000800
Super-classes obo:MS_1000503c

area peak pickingc # Classes

URI http://purl.obolibrary.org/obo/MS_1000801
Super-classes obo:MS_1000035c
Sub-classes obo:MS_1001998c

height peak pickingc # Classes

URI http://purl.obolibrary.org/obo/MS_1000802
Super-classes obo:MS_1000035c

analyzer scan offsetc # Classes

URI http://purl.obolibrary.org/obo/MS_1000803
Super-classes obo:MS_1000503c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000040c

electromagnetic radiation spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000804
Super-classes obo:MS_1000559c
obo:MS_1000524c

emission spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000805
Super-classes obo:MS_1000524c
obo:MS_1000559c

absorption spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000806
Super-classes obo:MS_1000559c
obo:MS_1000524c

Th/sc # Classes

URI http://purl.obolibrary.org/obo/MS_1000807
Super-classes obo:UO_0000000c

chromatogram attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1000808
Super-classes obo:MS_1000547c
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000625c
Sub-classes obo:MS_1000809c
obo:MS_1000130c
obo:MS_1000527c
obo:MS_1000129c
obo:MS_1000619c
obo:MS_1000618c
obo:MS_1000528c

chromatogram titlec # Classes

URI http://purl.obolibrary.org/obo/MS_1000809
Description

This is the preferred storage place for the spectrum title.
Super-classes obo:MS_1000808c

ion current chromatogramc # Classes

URI http://purl.obolibrary.org/obo/MS_1000810
Super-classes obo:MS_1000626c
obo:MS_1000524c
Sub-classes obo:MS_1000627c
obo:MS_1001474c
obo:MS_1000628c
obo:MS_1001472c
obo:MS_1001473c
obo:MS_1000235c

electromagnetic radiation chromatogramc # Classes

URI http://purl.obolibrary.org/obo/MS_1000811
Super-classes obo:MS_1000626c
obo:MS_1000524c
Sub-classes obo:MS_1000812c
obo:MS_1000813c

absorption chromatogramc # Classes

URI http://purl.obolibrary.org/obo/MS_1000812
Super-classes obo:MS_1000811c

emission chromatogramc # Classes

URI http://purl.obolibrary.org/obo/MS_1000813
Super-classes obo:MS_1000811c

counts per secondc # Classes

URI http://purl.obolibrary.org/obo/MS_1000814
Super-classes obo:MS_1000043c

Bruker BAF formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000815
Super-classes obo:MS_1000560c

Bruker U2 formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000816
Super-classes obo:MS_1000560c

HyStarc # Classes

URI http://purl.obolibrary.org/obo/MS_1000817
Super-classes obo:MS_1000692c

Acquity UPLC PDAc # Classes

URI http://purl.obolibrary.org/obo/MS_1000818
Super-classes obo:MS_1000126c
obo:MS_1000621c

Acquity UPLC FLRc # Classes

URI http://purl.obolibrary.org/obo/MS_1000819
Super-classes obo:MS_1000126c
obo:MS_1002308c

flow rate arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1000820
Super-classes obo:MS_1000513c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000271c

pressure arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1000821
Super-classes obo:MS_1000513c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000110c

temperature arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1000822
Super-classes obo:MS_1000513c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000012c

Bruker U2 nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000823
Super-classes obo:MS_1000767c

no nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000824
Super-classes obo:MS_1000767c

Bruker FID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000825
Super-classes obo:MS_1000560c

elution timec # Classes

URI http://purl.obolibrary.org/obo/MS_1000826
Super-classes obo:MS_1000503c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000031c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000010c

isolation window target m/zc # Classes

URI http://purl.obolibrary.org/obo/MS_1000827
Super-classes obo:MS_1000792c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000040c

isolation window lower offsetc # Classes

URI http://purl.obolibrary.org/obo/MS_1000828
Super-classes obo:MS_1000792c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000040c

isolation window upper offsetc # Classes

URI http://purl.obolibrary.org/obo/MS_1000829
Super-classes obo:MS_1000792c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000040c

sample preparationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000831
Super-classes obo:MS_1000547c
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000548c
Sub-classes obo:MS_1002985c
obo:MS_1002986c

MALDI matrix applicationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000832
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000831c
Sub-classes obo:MS_1000835c
obo:MS_1000834c

matrix application typec # Classes

URI http://purl.obolibrary.org/obo/MS_1000833
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000832c
Sub-classes obo:MS_1000839c
obo:MS_1000837c
obo:MS_1001991c
obo:MS_1001992c
obo:MS_1001988c
obo:MS_1000836c
obo:MS_1001993c
obo:MS_1000838c
obo:MS_1001987c
obo:MS_1001989c
obo:MS_1001990c

matrix solutionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000834
Super-classes obo:MS_1000832c

matrix solution concentrationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000835
Super-classes obo:MS_1000832c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000175c

dried droplet MALDI matrix preparationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000836
Super-classes obo:MS_1000833c

printed MALDI matrix preparationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000837
Super-classes obo:MS_1000833c

sprayed MALDI matrix preparationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000838
Super-classes obo:MS_1000833c

precoated MALDI sample platec # Classes

URI http://purl.obolibrary.org/obo/MS_1000839
Super-classes obo:MS_1000833c
obo:MS_1001938c

laserc # Classes

URI http://purl.obolibrary.org/obo/MS_1000840
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000482c

laser attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1000841
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000840c
Sub-classes obo:MS_1000847c
obo:MS_1000848c
obo:MS_1000844c
obo:MS_1000845c
obo:MS_1000846c
obo:MS_1000843c
obo:MS_1000849c

laser typec # Classes

URI http://purl.obolibrary.org/obo/MS_1000842
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000840c
Sub-classes obo:MS_1000851c
obo:MS_1000850c
obo:MS_1000852c
obo:MS_1000853c

wavelengthc # Classes

URI http://purl.obolibrary.org/obo/MS_1000843
Description

This term was made obsolete because it was redundant with the Pato Ontology term wavelength (UO:0001242).
Super-classes obo:MS_1000841c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000018c

focus diameter xc # Classes

URI http://purl.obolibrary.org/obo/MS_1000844
Super-classes obo:MS_1000841c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000017c

focus diameter yc # Classes

URI http://purl.obolibrary.org/obo/MS_1000845
Super-classes obo:MS_1000841c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000017c

pulse energyc # Classes

URI http://purl.obolibrary.org/obo/MS_1000846
Super-classes obo:MS_1000841c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000112c

pulse durationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000847
Super-classes obo:MS_1000841c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000150c

attenuationc # Classes

URI http://purl.obolibrary.org/obo/MS_1000848
Super-classes obo:MS_1000841c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000187c

impact anglec # Classes

URI http://purl.obolibrary.org/obo/MS_1000849
Super-classes obo:MS_1000841c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000185c

gas laserc # Classes

URI http://purl.obolibrary.org/obo/MS_1000850
Super-classes obo:MS_1000842c

solid-state laserc # Classes

URI http://purl.obolibrary.org/obo/MS_1000851
Super-classes obo:MS_1000842c

dye-laserc # Classes

URI http://purl.obolibrary.org/obo/MS_1000852
Super-classes obo:MS_1000842c

free electron laserc # Classes

URI http://purl.obolibrary.org/obo/MS_1000853
Super-classes obo:MS_1000842c

LTQ XLc # Classes

URI http://purl.obolibrary.org/obo/MS_1000854
Super-classes obo:MS_1000494c

LTQ Velosc # Classes

URI http://purl.obolibrary.org/obo/MS_1000855
Super-classes obo:MS_1000494c

LTQ Velos ETDc # Classes

URI http://purl.obolibrary.org/obo/MS_1000856
Super-classes obo:MS_1000494c

run attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1000857
Super-classes obo:MS_1000547c
Sub-classes obo:MS_1002042c
obo:MS_1002521c
obo:MS_1002833c
obo:MS_1002270c
obo:MS_1000858c
obo:MS_1002084c

fraction identifierc # Classes

URI http://purl.obolibrary.org/obo/MS_1000858
Super-classes obo:MS_1000857c

moleculec # Classes

URI http://purl.obolibrary.org/obo/MS_1000859
Super-classes obo:MS_1000881c
Sub-classes obo:MS_1000860c
obo:MS_1000882c
obo:MS_1002959c
obo:MS_1003041c
obo:MS_1003055c
obo:MS_1003042c
obo:MS_1003035c

peptidec # Classes

URI http://purl.obolibrary.org/obo/MS_1000860
Super-classes obo:MS_1000859c
Sub-classes obo:MS_1003049c
obo:MS_1003015c

molecular entity propertyc # Classes

URI http://purl.obolibrary.org/obo/MS_1000861
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000881c
Sub-classes obo:MS_1000862c
obo:MS_1000224c
obo:MS_1002954c

isoelectric pointc # Classes

URI http://purl.obolibrary.org/obo/MS_1000862
Super-classes obo:MS_1000861c
Sub-classes obo:MS_1000863c

predicted isoelectric pointc # Classes

URI http://purl.obolibrary.org/obo/MS_1000863
Super-classes obo:MS_1000862c

chemical formulac # Classes

URI http://purl.obolibrary.org/obo/MS_1000864
Super-classes obo:MS_1003033c
Sub-classes obo:MS_1000867c
obo:MS_1000868c
obo:MS_1000866c
obo:MS_1000865c

empirical formulac # Classes

URI http://purl.obolibrary.org/obo/MS_1000865
Super-classes obo:MS_1000864c

molecular formulac # Classes

URI http://purl.obolibrary.org/obo/MS_1000866
Super-classes obo:MS_1000864c

structural formulac # Classes

URI http://purl.obolibrary.org/obo/MS_1000867
Super-classes obo:MS_1000864c

SMILES formulac # Classes

URI http://purl.obolibrary.org/obo/MS_1000868
Super-classes obo:MS_1000864c

collision gas pressurec # Classes

URI http://purl.obolibrary.org/obo/MS_1000869
Super-classes obo:MS_1000510c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000110c

4000 QTRAPc # Classes

URI http://purl.obolibrary.org/obo/MS_1000870
Description

This term was obsoleted because was redundant to MS:1000139.
Super-classes obo:MS_1000121c

SRM softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1000871
Super-classes obo:MS_1000531c
Sub-classes obo:MS_1000923c
obo:MS_1000922c
obo:MS_1002410c
obo:MS_1002220c
obo:MS_1000925c
obo:MS_1000872c

MaRiMbac # Classes

URI http://purl.obolibrary.org/obo/MS_1000872
Super-classes obo:MS_1000871c

peptide attribute calculation softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1000873
Super-classes obo:MS_1000531c
Sub-classes obo:MS_1000874c

SSRCalcc # Classes

URI http://purl.obolibrary.org/obo/MS_1000874
Super-classes obo:MS_1000873c

declustering potentialc # Classes

URI http://purl.obolibrary.org/obo/MS_1000875
Super-classes obo:MS_1000482c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000218c

cone voltagec # Classes

URI http://purl.obolibrary.org/obo/MS_1000876
Super-classes obo:MS_1000482c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000218c

tube lens voltagec # Classes

URI http://purl.obolibrary.org/obo/MS_1000877
Super-classes obo:MS_1000482c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000218c

external reference identifierc # Classes

URI http://purl.obolibrary.org/obo/MS_1000878
Super-classes obo:MS_1002840c
Sub-classes obo:MS_1001927c
obo:MS_1002836c
obo:MS_1002633c
obo:MS_1002837c
obo:MS_1001922c
obo:MS_1001919c
obo:MS_1002031c
obo:MS_1001929c
obo:MS_1002340c
obo:MS_1002873c
obo:MS_1001930c
obo:MS_1002632c
obo:MS_1002487c
obo:MS_1002997c
obo:MS_1002488c
obo:MS_1002032c
obo:MS_1001921c
obo:MS_1000879c
obo:MS_1001928c
obo:MS_1002420c
obo:MS_1002872c
obo:MS_1003031c

PubMed identifierc # Classes

URI http://purl.obolibrary.org/obo/MS_1000879
Super-classes obo:MS_1000878c

interchannel delayc # Classes

URI http://purl.obolibrary.org/obo/MS_1000880
Super-classes obo:MS_1000503c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000010c

molecular entityc # Classes

URI http://purl.obolibrary.org/obo/MS_1000881
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_0000000c
Sub-classes obo:MS_1003034c
obo:MS_1000859c
obo:MS_1002806c

proteinc # Classes

URI http://purl.obolibrary.org/obo/MS_1000882
Super-classes obo:MS_1000859c

protein short namec # Classes

URI http://purl.obolibrary.org/obo/MS_1000883
Super-classes obo:MS_1000884c

protein attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1000884
Super-classes obo:MS_1001806c
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000882c
Sub-classes obo:MS_1000886c
obo:MS_1000883c
obo:MS_1000885c
obo:MS_1000934c
obo:MS_1000933c

protein accessionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000885
Super-classes obo:MS_1003046c
obo:MS_1000884c

protein namec # Classes

URI http://purl.obolibrary.org/obo/MS_1000886
Super-classes obo:MS_1000884c

peptide attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1000887
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000860c
Sub-classes obo:MS_1003043c
obo:MS_1003044c
obo:MS_1003045c

stripped peptide sequencec # Classes

URI http://purl.obolibrary.org/obo/MS_1000888
Super-classes obo:MS_1003050c

peptidoform sequencec # Classes

URI http://purl.obolibrary.org/obo/MS_1000889
Description

Make it more general as there are actually many other ways to display a modified peptide sequence.
Super-classes obo:MS_1003050c

peptidoform labeling statec # Classes

URI http://purl.obolibrary.org/obo/MS_1000890
Super-classes obo:MS_1003050c
Sub-classes obo:MS_1000891c
obo:MS_1000892c

heavy labeled peptidoformc # Classes

URI http://purl.obolibrary.org/obo/MS_1000891
Super-classes obo:MS_1000890c

unlabeled peptidoformc # Classes

URI http://purl.obolibrary.org/obo/MS_1000892
Super-classes obo:MS_1000890c

peptidoform group labelc # Classes

URI http://purl.obolibrary.org/obo/MS_1000893
Super-classes obo:MS_1003050c

retention timec # Classes

URI http://purl.obolibrary.org/obo/MS_1000894
Super-classes obo:MS_1003050c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000010c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000031c
Sub-classes obo:MS_1000896c
obo:MS_1000895c
obo:MS_1000897c

local retention timec # Classes

URI http://purl.obolibrary.org/obo/MS_1000895
Super-classes obo:MS_1000894c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000010c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000031c

normalized retention timec # Classes

URI http://purl.obolibrary.org/obo/MS_1000896
Super-classes obo:MS_1000894c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000010c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000031c

predicted retention timec # Classes

URI http://purl.obolibrary.org/obo/MS_1000897
Super-classes obo:MS_1000894c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000010c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000031c

standardc # Classes

URI http://purl.obolibrary.org/obo/MS_1000898
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_0000000c
Sub-classes obo:MS_1000900c
obo:MS_1000899c
obo:MS_1000901c

de facto standardc # Classes

URI http://purl.obolibrary.org/obo/MS_1000899
Super-classes obo:MS_1000898c

minimum information standardc # Classes

URI http://purl.obolibrary.org/obo/MS_1000900
Super-classes obo:MS_1000898c

retention time normalization standardc # Classes

URI http://purl.obolibrary.org/obo/MS_1000901
Super-classes obo:MS_1000898c
Sub-classes obo:MS_1002005c
obo:MS_1000902c

H-PINS retention time normalization standardc # Classes

URI http://purl.obolibrary.org/obo/MS_1000902
Super-classes obo:MS_1000901c

product ion series ordinalc # Classes

URI http://purl.obolibrary.org/obo/MS_1000903
Super-classes obo:MS_1001221c

product ion m/z deltac # Classes

URI http://purl.obolibrary.org/obo/MS_1000904
Super-classes obo:MS_1001221c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000040c

percent of base peak times 100c # Classes

URI http://purl.obolibrary.org/obo/MS_1000905
Super-classes obo:MS_1000043c

peak intensity rankc # Classes

URI http://purl.obolibrary.org/obo/MS_1000906
Super-classes obo:MS_1000455c
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000231c

peak targeting suitability rankc # Classes

URI http://purl.obolibrary.org/obo/MS_1000907
Super-classes obo:MS_1000455c
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000231c

transitionc # Classes

URI http://purl.obolibrary.org/obo/MS_1000908
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001458c

transition validation methodc # Classes

URI http://purl.obolibrary.org/obo/MS_1000909
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000908c
Sub-classes obo:MS_1000910c
obo:MS_1000913c
obo:MS_1000911c
obo:MS_1000912c

transition optimized on specified instrumentc # Classes

URI http://purl.obolibrary.org/obo/MS_1000910
Super-classes obo:MS_1000909c

transition validated with an MS/MS spectrum on specified instrumentc # Classes

URI http://purl.obolibrary.org/obo/MS_1000911
Super-classes obo:MS_1000909c

transition purported from an MS/MS spectrum on a different, specified instrumentc # Classes

URI http://purl.obolibrary.org/obo/MS_1000912
Super-classes obo:MS_1000909c

transition predicted by informatic analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1000913
Super-classes obo:MS_1000909c

tab delimited text formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000914
Super-classes obo:MS_1001040c
Sub-classes obo:MS_1002601c

retention time window attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1000915
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000894c
Sub-classes obo:MS_1001907c
obo:MS_1000916c
obo:MS_1000917c

retention time window lower offsetc # Classes

URI http://purl.obolibrary.org/obo/MS_1000916
Super-classes obo:MS_1000915c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000031c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000010c

retention time window upper offsetc # Classes

URI http://purl.obolibrary.org/obo/MS_1000917
Super-classes obo:MS_1000915c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000031c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000010c

target listc # Classes

URI http://purl.obolibrary.org/obo/MS_1000918
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001458c

target inclusion exclusion priorityc # Classes

URI http://purl.obolibrary.org/obo/MS_1000919
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000918c
Sub-classes obo:MS_1000921c
obo:MS_1000920c

includes supersede excludesc # Classes

URI http://purl.obolibrary.org/obo/MS_1000920
Super-classes obo:MS_1000919c

excludes supersede includesc # Classes

URI http://purl.obolibrary.org/obo/MS_1000921
Super-classes obo:MS_1000919c

Skylinec # Classes

URI http://purl.obolibrary.org/obo/MS_1000922
Super-classes obo:MS_1001139c
obo:MS_1000871c

TIQAMc # Classes

URI http://purl.obolibrary.org/obo/MS_1000923
Super-classes obo:MS_1000871c

MaRiMbac # Classes

URI http://purl.obolibrary.org/obo/MS_1000924
Description

This term was made obsolete because it was redundant with an existing term (MS:1000872).

ATAQSc # Classes

URI http://purl.obolibrary.org/obo/MS_1000925
Super-classes obo:MS_1000871c

product interpretation rankc # Classes

URI http://purl.obolibrary.org/obo/MS_1000926
Super-classes obo:MS_1001221c

ion injection timec # Classes

URI http://purl.obolibrary.org/obo/MS_1000927
Super-classes obo:MS_1000503c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000028c

calibration spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1000928
Super-classes obo:MS_1000559c

Shimadzu Biotech nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1000929
Super-classes obo:MS_1000767c

Shimadzu Biotech database entityc # Classes

URI http://purl.obolibrary.org/obo/MS_1000930
Super-classes obo:MS_1000560c

QTRAP 5500c # Classes

URI http://purl.obolibrary.org/obo/MS_1000931
Super-classes obo:MS_1000121c

TripleTOF 5600c # Classes

URI http://purl.obolibrary.org/obo/MS_1000932
Super-classes obo:MS_1000121c

protein modificationsc # Classes

URI http://purl.obolibrary.org/obo/MS_1000933
Super-classes obo:MS_1000884c

gene namec # Classes

URI http://purl.obolibrary.org/obo/MS_1000934
Super-classes obo:MS_1000884c

spectrum interpretationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001000
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_0000000c

SEQUEST:CleavesAtc # Classes

URI http://purl.obolibrary.org/obo/MS_1001005
Super-classes obo:MS_1002096c

SEQUEST:ViewCVc # Classes

URI http://purl.obolibrary.org/obo/MS_1001006
Super-classes obo:MS_1002096c
Sub-classes obo:MS_1001103c
obo:MS_1001041c
obo:MS_1001038c
obo:MS_1001102c

SEQUEST:OutputLinesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001007
Super-classes obo:MS_1002096c

SEQUEST:DescriptionLinesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001009
Super-classes obo:MS_1002096c

de novo searchc # Classes

URI http://purl.obolibrary.org/obo/MS_1001010
Super-classes obo:MS_1001080c

search database detailsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001011
Super-classes obo:MS_1001249c
Sub-classes obo:MS_1001024c
obo:MS_1001450c
obo:MS_1001342c
obo:MS_1001423c
obo:MS_1001030c
obo:MS_1001013c
obo:MS_1001018c
obo:MS_1001025c
obo:MS_1001347c
obo:MS_1001014c
obo:MS_1001029c
obo:MS_1001012c
obo:MS_1001019c
obo:MS_1001410c
obo:MS_1002437c
obo:MS_1001015c
obo:MS_1001017c
obo:MS_1001016c

database sourcec # Classes

URI http://purl.obolibrary.org/obo/MS_1001012
Super-classes obo:MS_1001011c
Sub-classes obo:MS_1001252c
obo:MS_1001253c
obo:MS_1001254c

database namec # Classes

URI http://purl.obolibrary.org/obo/MS_1001013
Super-classes obo:MS_1001011c
Sub-classes obo:MS_1001289c
obo:MS_1001288c
obo:MS_1001142c
obo:MS_1001286c
obo:MS_1001287c
obo:MS_1002126c
obo:MS_1001290c
obo:MS_1001285c
obo:MS_1001084c

database local file pathc # Classes

URI http://purl.obolibrary.org/obo/MS_1001014
Super-classes obo:MS_1001011c

database original uric # Classes

URI http://purl.obolibrary.org/obo/MS_1001015
Super-classes obo:MS_1001011c

database versionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001016
Super-classes obo:MS_1001011c

database release datec # Classes

URI http://purl.obolibrary.org/obo/MS_1001017
Super-classes obo:MS_1001011c

database typec # Classes

URI http://purl.obolibrary.org/obo/MS_1001018
Super-classes obo:MS_1001011c
Sub-classes obo:MS_1001079c
obo:MS_1001073c

database filteringc # Classes

URI http://purl.obolibrary.org/obo/MS_1001019
Super-classes obo:MS_1001011c
Sub-classes obo:MS_1001511c
obo:MS_1001512c

DB filter taxonomyc # Classes

URI http://purl.obolibrary.org/obo/MS_1001020
Super-classes obo:MS_1001511c

DB filter on accession numbersc # Classes

URI http://purl.obolibrary.org/obo/MS_1001021
Super-classes obo:MS_1001511c

DB MW filterc # Classes

URI http://purl.obolibrary.org/obo/MS_1001022
Super-classes obo:MS_1001511c

DB PI filterc # Classes

URI http://purl.obolibrary.org/obo/MS_1001023
Super-classes obo:MS_1001511c

translation framec # Classes

URI http://purl.obolibrary.org/obo/MS_1001024
Super-classes obo:MS_1001011c

translation tablec # Classes

URI http://purl.obolibrary.org/obo/MS_1001025
Super-classes obo:MS_1001011c

SEQUEST:NormalizeXCorrValuesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001026
Super-classes obo:MS_1002096c

DB filter on sequence patternc # Classes

URI http://purl.obolibrary.org/obo/MS_1001027
Super-classes obo:MS_1001511c

SEQUEST:SequenceHeaderFilterc # Classes

URI http://purl.obolibrary.org/obo/MS_1001028
Super-classes obo:MS_1002096c

number of sequences searchedc # Classes

URI http://purl.obolibrary.org/obo/MS_1001029
Super-classes obo:MS_1001011c

number of peptide seqs compared to each spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1001030
Super-classes obo:MS_1001405c
obo:MS_1001011c

spectral library searchc # Classes

URI http://purl.obolibrary.org/obo/MS_1001031
Super-classes obo:MS_1001080c

SEQUEST:SequencePartialFilterc # Classes

URI http://purl.obolibrary.org/obo/MS_1001032
Super-classes obo:MS_1002096c

date / time search performedc # Classes

URI http://purl.obolibrary.org/obo/MS_1001035
Super-classes obo:MS_1001184c

search time takenc # Classes

URI http://purl.obolibrary.org/obo/MS_1001036
Super-classes obo:MS_1001184c

SEQUEST:ShowFragmentIonsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001037
Super-classes obo:MS_1002096c

SEQUEST:Consensusc # Classes

URI http://purl.obolibrary.org/obo/MS_1001038
Super-classes obo:MS_1001006c

intermediate analysis formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001040
Super-classes obo:MS_1001459c
Sub-classes obo:MS_1001563c
obo:MS_1001566c
obo:MS_1001401c
obo:MS_1001567c
obo:MS_1001422c
obo:MS_1001200c
obo:MS_1001199c
obo:MS_1001275c
obo:MS_1000914c
obo:MS_1001243c
obo:MS_1001565c
obo:MS_1000742c
obo:MS_1001464c
obo:MS_1001564c
obo:MS_1002388c
obo:MS_1001463c
obo:MS_1002576c
obo:MS_1002459c
obo:MS_1001421c
obo:MS_1001107c
obo:MS_1001399c
obo:MS_1001400c
obo:MS_1001276c
obo:MS_1002073c
obo:MS_1001242c

SEQUEST:sortCVc # Classes

URI http://purl.obolibrary.org/obo/MS_1001041
Super-classes obo:MS_1001006c
Sub-classes obo:MS_1001072c
obo:MS_1001094c
obo:MS_1001070c
obo:MS_1001059c
obo:MS_1001068c
obo:MS_1001050c
obo:MS_1001049c
obo:MS_1001052c
obo:MS_1001053c
obo:MS_1001071c
obo:MS_1001047c
obo:MS_1001046c
obo:MS_1001069c
obo:MS_1001048c
obo:MS_1001086c

SEQUEST:LimitToc # Classes

URI http://purl.obolibrary.org/obo/MS_1001042
Super-classes obo:MS_1002096c

cleavage agent detailsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001044
Super-classes obo:MS_1001249c
Sub-classes obo:MS_1001045c

cleavage agent namec # Classes

URI http://purl.obolibrary.org/obo/MS_1001045
Super-classes obo:MS_1001044c
Sub-classes obo:MS_1001915c
obo:MS_1001311c
obo:MS_1001917c
obo:MS_1001313c
obo:MS_1001305c
obo:MS_1001918c
obo:MS_1001314c
obo:MS_1001955c
obo:MS_1001312c
obo:MS_1001304c
obo:MS_1001307c
obo:MS_1001091c
obo:MS_1001310c
obo:MS_1001306c
obo:MS_1001308c
obo:MS_1001315c
obo:MS_1001956c
obo:MS_1001303c
obo:MS_1001309c
obo:MS_1001916c
obo:MS_1001251c

SEQUEST:sort by dCnc # Classes

URI http://purl.obolibrary.org/obo/MS_1001046
Super-classes obo:MS_1001041c

SEQUEST:sort by dMc # Classes

URI http://purl.obolibrary.org/obo/MS_1001047
Super-classes obo:MS_1001041c

SEQUEST:sort by Ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001048
Super-classes obo:MS_1001041c

SEQUEST:sort by MH+c # Classes

URI http://purl.obolibrary.org/obo/MS_1001049
Super-classes obo:MS_1001041c

SEQUEST:sort by Pc # Classes

URI http://purl.obolibrary.org/obo/MS_1001050
Super-classes obo:MS_1001041c

multiple enzyme combination rulesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001051

SEQUEST:sort by PreviousAminoAcidc # Classes

URI http://purl.obolibrary.org/obo/MS_1001052
Super-classes obo:MS_1001041c

SEQUEST:sort by Refc # Classes

URI http://purl.obolibrary.org/obo/MS_1001053
Super-classes obo:MS_1001041c

modification parametersc # Classes

URI http://purl.obolibrary.org/obo/MS_1001055
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001000c
Sub-classes obo:MS_1002069c
obo:MS_1000336c
obo:MS_1001056c
obo:MS_1003022c
obo:MS_1002506c
obo:MS_1002504c
obo:MS_1002068c
obo:MS_1002062c
obo:MS_1001061c
obo:MS_1001057c
obo:MS_1003021c

modification specificity rulec # Classes

URI http://purl.obolibrary.org/obo/MS_1001056
Super-classes obo:MS_1001055c
Sub-classes obo:MS_1002057c
obo:MS_1002058c
obo:MS_1001875c
obo:MS_1001190c
obo:MS_1001189c
obo:MS_1001876c

tolerance on typesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001057
Super-classes obo:MS_1001055c

quality estimation by manual validationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001058
Super-classes obo:MS_1001060c

SEQUEST:sort by RSpc # Classes

URI http://purl.obolibrary.org/obo/MS_1001059
Super-classes obo:MS_1001041c

quality estimation method detailsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001060
Super-classes obo:MS_1001249c
Sub-classes obo:MS_1001574c
obo:MS_1001454c
obo:MS_1001058c
obo:MS_1001194c
obo:MS_1002482c

neutral lossc # Classes

URI http://purl.obolibrary.org/obo/MS_1001061
Super-classes obo:MS_1001055c

Mascot MGF formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001062
Super-classes obo:MS_1000560c

TODOscoring modelc # Classes

URI http://purl.obolibrary.org/obo/MS_1001065
Description

This term was made obsolete and is replaced by the term (MS:1001961).
Super-classes obo:MS_1001249c

ions series considered in searchc # Classes

URI http://purl.obolibrary.org/obo/MS_1001066
Super-classes obo:MS_1001249c
Sub-classes obo:MS_1002450c
obo:MS_1001149c
obo:MS_1001151c
obo:MS_1001148c
obo:MS_1002451c
obo:MS_1001152c
obo:MS_1001146c
obo:MS_1001150c

SEQUEST:sort by Spc # Classes

URI http://purl.obolibrary.org/obo/MS_1001068
Super-classes obo:MS_1001041c

SEQUEST:sort by TICc # Classes

URI http://purl.obolibrary.org/obo/MS_1001069
Super-classes obo:MS_1001041c

SEQUEST:sort by Scanc # Classes

URI http://purl.obolibrary.org/obo/MS_1001070
Super-classes obo:MS_1001041c

SEQUEST:sort by Sequencec # Classes

URI http://purl.obolibrary.org/obo/MS_1001071
Super-classes obo:MS_1001041c

SEQUEST:sort by Sfc # Classes

URI http://purl.obolibrary.org/obo/MS_1001072
Super-classes obo:MS_1001041c

database type amino acidc # Classes

URI http://purl.obolibrary.org/obo/MS_1001073
Super-classes obo:MS_1001018c
Sub-classes obo:MS_1002752c

database type nucleotidec # Classes

URI http://purl.obolibrary.org/obo/MS_1001079
Super-classes obo:MS_1001018c
Sub-classes obo:MS_1001178c

search typec # Classes

URI http://purl.obolibrary.org/obo/MS_1001080
Super-classes obo:MS_1001249c
Sub-classes obo:MS_1001010c
obo:MS_1001031c
obo:MS_1002755c
obo:MS_1002489c
obo:MS_1001584c
obo:MS_1001081c
obo:MS_1001083c
obo:MS_1001082c

pmf searchc # Classes

URI http://purl.obolibrary.org/obo/MS_1001081
Super-classes obo:MS_1001080c

tag searchc # Classes

URI http://purl.obolibrary.org/obo/MS_1001082
Super-classes obo:MS_1001080c

ms-ms searchc # Classes

URI http://purl.obolibrary.org/obo/MS_1001083
Super-classes obo:MS_1001080c

database nrc # Classes

URI http://purl.obolibrary.org/obo/MS_1001084
Super-classes obo:MS_1001013c

protein-level identification attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1001085
Super-classes obo:MS_1002694c
Sub-classes obo:MS_1001089c
obo:MS_1001098c
obo:MS_1001116c
obo:MS_1001088c
obo:MS_1001301c
obo:MS_1001101c
obo:MS_1001100c
obo:MS_1001097c
obo:MS_1001147c
obo:MS_1001093c
obo:MS_1001099c

SEQUEST:sort by XCorrc # Classes

URI http://purl.obolibrary.org/obo/MS_1001086
Super-classes obo:MS_1001041c

SEQUEST:ProcessCVc # Classes

URI http://purl.obolibrary.org/obo/MS_1001087
Super-classes obo:MS_1002096c
Sub-classes obo:MS_1001096c
obo:MS_1001095c
obo:MS_1001109c
obo:MS_1001106c

protein descriptionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001088
Super-classes obo:MS_1001085c
obo:MS_1001342c

molecule taxonomyc # Classes

URI http://purl.obolibrary.org/obo/MS_1001089
Super-classes obo:MS_1001085c
obo:MS_1001512c
obo:MS_1001342c
Sub-classes obo:MS_1001467c
obo:MS_1001090c
obo:MS_1001470c
obo:MS_1001468c
obo:MS_1001469c

taxonomy nomenclaturec # Classes

URI http://purl.obolibrary.org/obo/MS_1001090
Super-classes obo:MS_1001089c

NoEnzymec # Classes

URI http://purl.obolibrary.org/obo/MS_1001091
Description

This term was made obsolete because it is ambiguous and is replaced by NoCleavage (MS:1001955) and unspecific cleavage (MS:1001956).
Super-classes obo:MS_1001045c

peptide sequence-level identification statisticc # Classes

URI http://purl.obolibrary.org/obo/MS_1001092
Super-classes obo:MS_1001105c
Sub-classes obo:MS_1002358c
obo:MS_1001870c
obo:MS_1001125c
obo:MS_1002362c
obo:MS_1001192c
obo:MS_1002359c
obo:MS_1001193c
obo:MS_1001191c
obo:MS_1001250c
obo:MS_1001872c

sequence coveragec # Classes

URI http://purl.obolibrary.org/obo/MS_1001093
Super-classes obo:MS_1001085c

SEQUEST:sort by zc # Classes

URI http://purl.obolibrary.org/obo/MS_1001094
Super-classes obo:MS_1001041c

SEQUEST:ProcessAllc # Classes

URI http://purl.obolibrary.org/obo/MS_1001095
Super-classes obo:MS_1001087c

SEQUEST:TopPercentMostIntensec # Classes

URI http://purl.obolibrary.org/obo/MS_1001096
Super-classes obo:MS_1001087c

distinct peptide sequencesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001097
Super-classes obo:MS_1001085c

confident distinct peptide sequencesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001098
Super-classes obo:MS_1001085c

confident peptide qualificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001099
Super-classes obo:MS_1001085c

confident peptide sequence numberc # Classes

URI http://purl.obolibrary.org/obo/MS_1001100
Super-classes obo:MS_1001085c

protein group or subset relationshipc # Classes

URI http://purl.obolibrary.org/obo/MS_1001101
Super-classes obo:MS_1001085c
Sub-classes obo:MS_1002401c
obo:MS_1002409c
obo:MS_1001592c
obo:MS_1001591c
obo:MS_1001593c
obo:MS_1002571c
obo:MS_1001596c
obo:MS_1001597c
obo:MS_1002570c
obo:MS_1001598c
obo:MS_1001594c
obo:MS_1001599c
obo:MS_1002403c
obo:MS_1001600c
obo:MS_1001595c
obo:MS_1002402c

SEQUEST:Chromatogramc # Classes

URI http://purl.obolibrary.org/obo/MS_1001102
Super-classes obo:MS_1001006c

SEQUEST:InfoAndLogc # Classes

URI http://purl.obolibrary.org/obo/MS_1001103
Super-classes obo:MS_1001006c

database UniProtKB/Swiss-Protc # Classes

URI http://purl.obolibrary.org/obo/MS_1001104
Super-classes obo:MS_1002126c

peptide sequence-level identification attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1001105
Super-classes obo:MS_1002694c
Sub-classes obo:MS_1001117c
obo:MS_1001113c
obo:MS_1002217c
obo:MS_1002341c
obo:MS_1001124c
obo:MS_1001127c
obo:MS_1001122c
obo:MS_1001123c
obo:MS_1001121c
obo:MS_1002500c
obo:MS_1001112c
obo:MS_1002520c
obo:MS_1002502c
obo:MS_1001092c
obo:MS_1002503c
obo:MS_1002221c
obo:MS_1001114c
obo:MS_1001355c
obo:MS_1002636c

SEQUEST:TopNumberc # Classes

URI http://purl.obolibrary.org/obo/MS_1001106
Super-classes obo:MS_1001087c

data stored in databasec # Classes

URI http://purl.obolibrary.org/obo/MS_1001107
Super-classes obo:MS_1001040c

param: a ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001108
Super-classes obo:MS_1002473c

SEQUEST:CullToc # Classes

URI http://purl.obolibrary.org/obo/MS_1001109
Super-classes obo:MS_1001087c

SEQUEST:modeCVc # Classes

URI http://purl.obolibrary.org/obo/MS_1001110
Super-classes obo:MS_1002096c
Sub-classes obo:MS_1001126c
obo:MS_1001120c
obo:MS_1001111c

SEQUEST:Fullc # Classes

URI http://purl.obolibrary.org/obo/MS_1001111
Super-classes obo:MS_1001110c

n-terminal flanking residuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001112
Super-classes obo:MS_1003046c
obo:MS_1001105c

c-terminal flanking residuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001113
Super-classes obo:MS_1001105c
obo:MS_1003046c

retention time(s)c # Classes

URI http://purl.obolibrary.org/obo/MS_1001114
Description

This term was made obsolete because scan start time (MS:1000016) should be used instead.
Super-classes obo:MS_1001105c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000010c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000031c

scan number(s)c # Classes

URI http://purl.obolibrary.org/obo/MS_1001115
Description

This former purgatory term was made obsolete.

single protein identification statisticc # Classes

URI http://purl.obolibrary.org/obo/MS_1001116
Super-classes obo:MS_1001085c
Sub-classes obo:MS_1001192c
obo:MS_1001193c
obo:MS_1001250c
obo:MS_1001869c
obo:MS_1001873c
obo:MS_1002364c
obo:MS_1001198c
obo:MS_1001871c
obo:MS_1002268c
obo:MS_1001125c
obo:MS_1002542c
obo:MS_1002363c
obo:MS_1002367c

theoretical massc # Classes

URI http://purl.obolibrary.org/obo/MS_1001117
Super-classes obo:MS_1001105c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000221c

param: b ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001118
Super-classes obo:MS_1002473c

param: c ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001119
Super-classes obo:MS_1002473c

number of matched peaksc # Classes

URI http://purl.obolibrary.org/obo/MS_1001121
Super-classes obo:MS_1001105c

ions series consideredc # Classes

URI http://purl.obolibrary.org/obo/MS_1001122
Super-classes obo:MS_1001105c

number of peaks usedc # Classes

URI http://purl.obolibrary.org/obo/MS_1001123
Super-classes obo:MS_1001105c

number of peaks submittedc # Classes

URI http://purl.obolibrary.org/obo/MS_1001124
Super-classes obo:MS_1001105c

manual validationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001125
Super-classes obo:MS_1001092c
obo:MS_1001116c

SEQUEST:Fastc # Classes

URI http://purl.obolibrary.org/obo/MS_1001126
Super-classes obo:MS_1001110c

peptide sharing detailsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001127
Super-classes obo:MS_1001105c
Sub-classes obo:MS_1001175c
obo:MS_1001363c

SEQUEST:selectCVc # Classes

URI http://purl.obolibrary.org/obo/MS_1001128
Super-classes obo:MS_1002096c
Sub-classes obo:MS_1001145c
obo:MS_1001144c

quantification informationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001129
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001000c
Sub-classes obo:MS_1001833c
obo:MS_1001805c
obo:MS_1001832c
obo:MS_1001806c
obo:MS_1001140c
obo:MS_1001139c

peptide raw areac # Classes

URI http://purl.obolibrary.org/obo/MS_1001130
Description

This term was made obsolete because it is replaced by 'MS1 feature area' (MS:1001844).
Super-classes obo:MS_1002737c

error on peptide areac # Classes

URI http://purl.obolibrary.org/obo/MS_1001131
Super-classes obo:MS_1002737c

peptide ratioc # Classes

URI http://purl.obolibrary.org/obo/MS_1001132
Super-classes obo:MS_1002737c

error on peptide ratioc # Classes

URI http://purl.obolibrary.org/obo/MS_1001133
Super-classes obo:MS_1002737c

protein ratioc # Classes

URI http://purl.obolibrary.org/obo/MS_1001134
Super-classes obo:MS_1002738c

error on protein ratioc # Classes

URI http://purl.obolibrary.org/obo/MS_1001135
Super-classes obo:MS_1002738c

p-value (protein diff from 1 randomly)c # Classes

URI http://purl.obolibrary.org/obo/MS_1001136
Description

This term was made obsolete because it is replaced by 't-test p-value' (MS:1001855).
Super-classes obo:MS_1002738c

absolute quantityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001137
Super-classes obo:MS_1001805c

error on absolute quantityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001138
Super-classes obo:MS_1001805c

quantitation software namec # Classes

URI http://purl.obolibrary.org/obo/MS_1001139
Super-classes obo:MS_1000531c
obo:MS_1001129c
Sub-classes obo:MS_1001583c
obo:MS_1001830c
obo:MS_1000922c
obo:MS_1001488c
obo:MS_1002123c
obo:MS_1001947c
obo:MS_1002129c
obo:MS_1002410c
obo:MS_1001831c
obo:MS_1000739c
obo:MS_1002059c
obo:MS_1001948c
obo:MS_1001946c
obo:MS_1002124c
obo:MS_1002210c
obo:MS_1002063c
obo:MS_1002546c

quantitation software versionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001140
Description

This term was made obsolete because part of mzQuantML schema.
Super-classes obo:MS_1001129c

intensity of precursor ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001141
Super-classes obo:MS_1001805c
Sub-classes obo:MS_1003085c
obo:MS_1003086c

database IPI_humanc # Classes

URI http://purl.obolibrary.org/obo/MS_1001142
Super-classes obo:MS_1001013c

PSM-level search engine specific statisticc # Classes

URI http://purl.obolibrary.org/obo/MS_1001143
Super-classes obo:MS_1002347c
Sub-classes obo:MS_1002248c
obo:MS_1002721c
obo:MS_1001571c
obo:MS_1001491c
obo:MS_1001174c
obo:MS_1001396c
obo:MS_1002681c
obo:MS_1001506c
obo:MS_1001887c
obo:MS_1001572c
obo:MS_1002534c
obo:MS_1001161c
obo:MS_1002931c
obo:MS_1002309c
obo:MS_1002722c
obo:MS_1001505c
obo:MS_1001217c
obo:MS_1002929c
obo:MS_1001155c
obo:MS_1001418c
obo:MS_1001501c
obo:MS_1001218c
obo:MS_1002250c
obo:MS_1002466c
obo:MS_1002684c
obo:MS_1002995c
obo:MS_1002950c
obo:MS_1002682c
obo:MS_1002448c
obo:MS_1001499c
obo:MS_1001156c
obo:MS_1002044c
obo:MS_1002056c
obo:MS_1002249c
obo:MS_1002338c
obo:MS_1001589c
obo:MS_1001215c
obo:MS_1002262c
obo:MS_1002355c
obo:MS_1002266c
obo:MS_1002725c
obo:MS_1002834c
obo:MS_1001417c
obo:MS_1001371c
obo:MS_1002319c
obo:MS_1002055c
obo:MS_1002256c
obo:MS_1002467c
obo:MS_1002662c
obo:MS_1002685c
obo:MS_1001492c
obo:MS_1002754c
obo:MS_1001952c
obo:MS_1002049c
obo:MS_1002053c
obo:MS_1001974c
obo:MS_1002259c
obo:MS_1001570c
obo:MS_1001495c
obo:MS_1002254c
obo:MS_1002051c
obo:MS_1001504c
obo:MS_1001580c
obo:MS_1001496c
obo:MS_1002723c
obo:MS_1001330c
obo:MS_1001888c
obo:MS_1001173c
obo:MS_1002951c
obo:MS_1002125c
obo:MS_1001590c
obo:MS_1002827c
obo:MS_1002686c
obo:MS_1001154c
obo:MS_1001331c
obo:MS_1002264c
obo:MS_1002252c
obo:MS_1002356c
obo:MS_1002263c
obo:MS_1001569c
obo:MS_1002535c
obo:MS_1001395c
obo:MS_1001420c
obo:MS_1001329c
obo:MS_1001162c
obo:MS_1001502c
obo:MS_1002253c
obo:MS_1003012c
obo:MS_1002683c
obo:MS_1001394c
obo:MS_1001493c
obo:MS_1002054c
obo:MS_1002724c
obo:MS_1001950c
obo:MS_1002953c
obo:MS_1002255c
obo:MS_1002265c
obo:MS_1001397c
obo:MS_1001328c
obo:MS_1001160c
obo:MS_1001573c
obo:MS_1001370c
obo:MS_1001498c
obo:MS_1002928c
obo:MS_1002311c
obo:MS_1001171c
obo:MS_1001503c
obo:MS_1002258c
obo:MS_1002545c
obo:MS_1001497c
obo:MS_1001568c
obo:MS_1001393c
obo:MS_1002052c
obo:MS_1002045c
obo:MS_1001874c
obo:MS_1001172c
obo:MS_1001500c
obo:MS_1001419c
obo:MS_1003024c
obo:MS_1001398c
obo:MS_1001219c

SEQUEST:SelectDefaultc # Classes

URI http://purl.obolibrary.org/obo/MS_1001144
Super-classes obo:MS_1001128c

SEQUEST:SelectAdvancedCVc # Classes

URI http://purl.obolibrary.org/obo/MS_1001145
Super-classes obo:MS_1001128c

param: a ion-NH3 DEPRECATEDc # Classes

URI http://purl.obolibrary.org/obo/MS_1001146
Super-classes obo:MS_1001066c

protein ambiguity group result detailsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001147
Super-classes obo:MS_1001085c
obo:MS_1001153c

param: a ion-H2O DEPRECATEDc # Classes

URI http://purl.obolibrary.org/obo/MS_1001148
Super-classes obo:MS_1001066c

param: b ion-NH3 DEPRECATEDc # Classes

URI http://purl.obolibrary.org/obo/MS_1001149
Super-classes obo:MS_1001066c

param: b ion-H2O DEPRECATEDc # Classes

URI http://purl.obolibrary.org/obo/MS_1001150
Super-classes obo:MS_1001066c

param: y ion-NH3 DEPRECATEDc # Classes

URI http://purl.obolibrary.org/obo/MS_1001151
Super-classes obo:MS_1001066c

param: y ion-H2O DEPRECATEDc # Classes

URI http://purl.obolibrary.org/obo/MS_1001152
Description

This term was made obsolete - use MS:1001262 and MS:1002455 instead.
Super-classes obo:MS_1001066c

search engine specific scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001153
Super-classes obo:MS_1002694c
Sub-classes obo:MS_1002684c
obo:MS_1002682c
obo:MS_1001159c
obo:MS_1002268c
obo:MS_1002685c
obo:MS_1001163c
obo:MS_1003017c
obo:MS_1002125c
obo:MS_1002988c
obo:MS_1002686c
obo:MS_1003016c
obo:MS_1002683c
obo:MS_1002257c
obo:MS_1001874c
obo:MS_1003024c
obo:MS_1002681c
obo:MS_1001147c
obo:MS_1002989c

SEQUEST:probabilityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001154
Super-classes obo:MS_1001143c

SEQUEST:xcorrc # Classes

URI http://purl.obolibrary.org/obo/MS_1001155
Super-classes obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

SEQUEST:deltacnc # Classes

URI http://purl.obolibrary.org/obo/MS_1001156
Super-classes obo:MS_1001143c

SEQUEST:spc # Classes

URI http://purl.obolibrary.org/obo/MS_1001157
Super-classes obo:MS_1002363c

SEQUEST:Uniqc # Classes

URI http://purl.obolibrary.org/obo/MS_1001158
Super-classes obo:MS_1002363c

SEQUEST:expectation valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001159
Super-classes obo:MS_1001153c

SEQUEST:sfc # Classes

URI http://purl.obolibrary.org/obo/MS_1001160
Super-classes obo:MS_1001143c

SEQUEST:matched ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001161
Super-classes obo:MS_1001143c

SEQUEST:total ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001162
Super-classes obo:MS_1001143c

SEQUEST:consensus scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001163
Super-classes obo:MS_1001153c

Paragon:unused protscorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001164
Super-classes obo:MS_1002363c
obo:MS_1002368c

Paragon:total protscorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001165
Super-classes obo:MS_1002363c
obo:MS_1002368c

Paragon:scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001166
Super-classes obo:MS_1002363c

Paragon:confidencec # Classes

URI http://purl.obolibrary.org/obo/MS_1001167
Super-classes obo:MS_1002363c

Paragon:expression error factorc # Classes

URI http://purl.obolibrary.org/obo/MS_1001168
Super-classes obo:MS_1002363c

Paragon:expression change p-valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001169
Super-classes obo:MS_1002363c

Paragon:contribc # Classes

URI http://purl.obolibrary.org/obo/MS_1001170
Super-classes obo:MS_1002363c

Mascot:scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001171
Super-classes obo:MS_1001143c

Mascot:expectation valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001172
Super-classes obo:MS_1001143c

Mascot:matched ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001173
Super-classes obo:MS_1001143c

Mascot:total ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001174
Super-classes obo:MS_1001143c

peptide shared in multiple proteinsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001175
Super-classes obo:MS_1001127c

(?<=[KR])(?!P)c # Classes

URI http://purl.obolibrary.org/obo/MS_1001176
Super-classes obo:MS_1001180c

number of molecular hypothesis consideredc # Classes

URI http://purl.obolibrary.org/obo/MS_1001177
Super-classes obo:MS_1001184c

database ESTc # Classes

URI http://purl.obolibrary.org/obo/MS_1001178
Super-classes obo:MS_1001079c

Cleavage agent regular expressionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001180
Super-classes obo:MS_1002479c
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001044c
Sub-classes obo:MS_1001340c
obo:MS_1001274c
obo:MS_1001272c
obo:MS_1001960c
obo:MS_1001958c
obo:MS_1001334c
obo:MS_1001338c
obo:MS_1001341c
obo:MS_1001333c
obo:MS_1001273c
obo:MS_1001335c
obo:MS_1001176c
obo:MS_1001339c
obo:MS_1001337c
obo:MS_1001959c
obo:MS_1001336c
obo:MS_1001332c
obo:MS_1001957c

search statisticsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001184
Super-classes obo:MS_1001405c
Sub-classes obo:MS_1002884c
obo:MS_1001177c
obo:MS_1001036c
obo:MS_1001035c
obo:MS_1002882c

modification specificity peptide N-termc # Classes

URI http://purl.obolibrary.org/obo/MS_1001189
Super-classes obo:MS_1001056c

modification specificity peptide C-termc # Classes

URI http://purl.obolibrary.org/obo/MS_1001190
Super-classes obo:MS_1001056c

p-valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001191
Description

This term was made obsolete because now is split into peptide and protein terms.
Super-classes obo:MS_1001198c
obo:MS_1001092c

Expect valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001192
Super-classes obo:MS_1001116c
obo:MS_1001092c

confidence scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001193
Super-classes obo:MS_1001116c
obo:MS_1001092c

quality estimation with decoy databasec # Classes

URI http://purl.obolibrary.org/obo/MS_1001194
Super-classes obo:MS_1001060c

decoy DB type reversec # Classes

URI http://purl.obolibrary.org/obo/MS_1001195
Super-classes obo:MS_1001450c

decoy DB type randomizedc # Classes

URI http://purl.obolibrary.org/obo/MS_1001196
Super-classes obo:MS_1001450c

DB composition target+decoyc # Classes

URI http://purl.obolibrary.org/obo/MS_1001197
Super-classes obo:MS_1001450c

protein identification confidence metricc # Classes

URI http://purl.obolibrary.org/obo/MS_1001198
Super-classes obo:MS_1001116c
Sub-classes obo:MS_1001191c

Mascot DAT formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001199
Super-classes obo:MS_1001040c

SEQUEST out file formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001200
Super-classes obo:MS_1001040c

DB MW filter maximumc # Classes

URI http://purl.obolibrary.org/obo/MS_1001201
Super-classes obo:MS_1001512c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000222c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000221c

DB MW filter minimumc # Classes

URI http://purl.obolibrary.org/obo/MS_1001202
Super-classes obo:MS_1001512c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000222c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000221c

DB PI filter maximumc # Classes

URI http://purl.obolibrary.org/obo/MS_1001203
Super-classes obo:MS_1001512c

DB PI filter minimumc # Classes

URI http://purl.obolibrary.org/obo/MS_1001204
Super-classes obo:MS_1001512c

Mascotc # Classes

URI http://purl.obolibrary.org/obo/MS_1001207
Super-classes obo:MS_1001456c

SEQUESTc # Classes

URI http://purl.obolibrary.org/obo/MS_1001208
Super-classes obo:MS_1001456c

Phenyxc # Classes

URI http://purl.obolibrary.org/obo/MS_1001209
Super-classes obo:MS_1001456c

mass type settingsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001210
Super-classes obo:MS_1001249c
Sub-classes obo:MS_1001211c
obo:MS_1001256c
obo:MS_1001212c
obo:MS_1001255c

parent mass type monoc # Classes

URI http://purl.obolibrary.org/obo/MS_1001211
Super-classes obo:MS_1001210c

parent mass type averagec # Classes

URI http://purl.obolibrary.org/obo/MS_1001212
Super-classes obo:MS_1001210c

search result detailsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001213
Description

This former purgatory term was made obsolete.

protein-level global FDRc # Classes

URI http://purl.obolibrary.org/obo/MS_1001214
Super-classes obo:MS_1002705c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c

SEQUEST:PeptideSpc # Classes

URI http://purl.obolibrary.org/obo/MS_1001215
Super-classes obo:MS_1001143c

SEQUEST:PeptideRankSpc # Classes

URI http://purl.obolibrary.org/obo/MS_1001217
Super-classes obo:MS_1001143c

SEQUEST:PeptideNumberc # Classes

URI http://purl.obolibrary.org/obo/MS_1001218
Super-classes obo:MS_1001143c

SEQUEST:PeptideIdnumberc # Classes

URI http://purl.obolibrary.org/obo/MS_1001219
Super-classes obo:MS_1001143c

frag: y ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001220
Super-classes obo:MS_1002307c

product ion attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1001221
Super-classes obo:MS_1002694c
Sub-classes obo:MS_1001241c
obo:MS_1002307c
obo:MS_1001225c
obo:MS_1001966c
obo:MS_1001240c
obo:MS_1000904c
obo:MS_1001227c
obo:MS_1000903c
obo:MS_1000926c
obo:MS_1001226c

frag: b ion - H2Oc # Classes

URI http://purl.obolibrary.org/obo/MS_1001222
Super-classes obo:MS_1002307c

frag: y ion - H2Oc # Classes

URI http://purl.obolibrary.org/obo/MS_1001223
Super-classes obo:MS_1002307c

frag: b ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001224
Super-classes obo:MS_1002307c

product ion m/zc # Classes

URI http://purl.obolibrary.org/obo/MS_1001225
Super-classes obo:MS_1001221c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000040c

product ion intensityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001226
Super-classes obo:MS_1001221c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000905c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000131c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000132c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000814c
Sub-classes obo:MS_1002226c
obo:MS_1002225c

product ion m/z errorc # Classes

URI http://purl.obolibrary.org/obo/MS_1001227
Super-classes obo:MS_1001221c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000040c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000166c

frag: x ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001228
Super-classes obo:MS_1002307c

frag: a ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001229
Super-classes obo:MS_1002307c

frag: z ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001230
Super-classes obo:MS_1002307c

frag: c ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001231
Super-classes obo:MS_1002307c

frag: b ion - NH3c # Classes

URI http://purl.obolibrary.org/obo/MS_1001232
Super-classes obo:MS_1002307c

frag: y ion - NH3c # Classes

URI http://purl.obolibrary.org/obo/MS_1001233
Super-classes obo:MS_1002307c

frag: a ion - H2Oc # Classes

URI http://purl.obolibrary.org/obo/MS_1001234
Super-classes obo:MS_1002307c

frag: a ion - NH3c # Classes

URI http://purl.obolibrary.org/obo/MS_1001235
Super-classes obo:MS_1002307c

frag: d ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001236
Super-classes obo:MS_1002307c

frag: v ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001237
Super-classes obo:MS_1002307c

frag: w ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001238
Super-classes obo:MS_1002307c

frag: immonium ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001239
Super-classes obo:MS_1002307c

non-identified ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001240
Super-classes obo:MS_1001221c

co-eluting ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001241
Super-classes obo:MS_1001221c

SEQUEST out folderc # Classes

URI http://purl.obolibrary.org/obo/MS_1001242
Super-classes obo:MS_1001040c

SEQUEST summaryc # Classes

URI http://purl.obolibrary.org/obo/MS_1001243
Super-classes obo:MS_1001040c

PerSeptive PKS formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001245
Super-classes obo:MS_1000560c

SCIEX API III formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001246
Super-classes obo:MS_1000560c

Bruker XML formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001247
Super-classes obo:MS_1000560c

search input detailsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001249
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001000c
Sub-classes obo:MS_1002093c
obo:MS_1001065c
obo:MS_1001356c
obo:MS_1002103c
obo:MS_1001066c
obo:MS_1002473c
obo:MS_1001080c
obo:MS_1002434c
obo:MS_1001011c
obo:MS_1001411c
obo:MS_1001044c
obo:MS_1001060c
obo:MS_1001210c
obo:MS_1002432c
obo:MS_1001529c
obo:MS_1002436c

local FDRc # Classes

URI http://purl.obolibrary.org/obo/MS_1001250
Super-classes obo:MS_1001116c
obo:MS_1001092c

Trypsinc # Classes

URI http://purl.obolibrary.org/obo/MS_1001251
Super-classes obo:MS_1001045c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1001176c

DB source EBIc # Classes

URI http://purl.obolibrary.org/obo/MS_1001252
Super-classes obo:MS_1001012c

DB source NCBIc # Classes

URI http://purl.obolibrary.org/obo/MS_1001253
Super-classes obo:MS_1001012c

DB source UniProtc # Classes

URI http://purl.obolibrary.org/obo/MS_1001254
Super-classes obo:MS_1001012c

fragment mass type averagec # Classes

URI http://purl.obolibrary.org/obo/MS_1001255
Super-classes obo:MS_1001210c

fragment mass type monoc # Classes

URI http://purl.obolibrary.org/obo/MS_1001256
Super-classes obo:MS_1001210c

param: v ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001257
Super-classes obo:MS_1002473c

param: d ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001258
Super-classes obo:MS_1002473c

param: immonium ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001259
Super-classes obo:MS_1002473c

param: w ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001260
Super-classes obo:MS_1002473c

param: x ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001261
Super-classes obo:MS_1002473c

param: y ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001262
Super-classes obo:MS_1002473c

param: z ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001263
Super-classes obo:MS_1002473c

role typec # Classes

URI http://purl.obolibrary.org/obo/MS_1001266
Super-classes obo:MS_1000585c
Sub-classes obo:MS_1001270c
obo:MS_1001269c
obo:MS_1001267c
obo:MS_1001268c
obo:MS_1001271c

software vendorc # Classes

URI http://purl.obolibrary.org/obo/MS_1001267
Super-classes obo:MS_1001266c

programmerc # Classes

URI http://purl.obolibrary.org/obo/MS_1001268
Super-classes obo:MS_1001266c

instrument vendorc # Classes

URI http://purl.obolibrary.org/obo/MS_1001269
Super-classes obo:MS_1001266c

lab personnelc # Classes

URI http://purl.obolibrary.org/obo/MS_1001270
Super-classes obo:MS_1001266c

researcherc # Classes

URI http://purl.obolibrary.org/obo/MS_1001271
Super-classes obo:MS_1001266c

(?<=R)(?!P)c # Classes

URI http://purl.obolibrary.org/obo/MS_1001272
Super-classes obo:MS_1001180c

(?=[BD])c # Classes

URI http://purl.obolibrary.org/obo/MS_1001273
Super-classes obo:MS_1001180c

(?=[DE])c # Classes

URI http://purl.obolibrary.org/obo/MS_1001274
Super-classes obo:MS_1001180c

ProteinScape SearchEventc # Classes

URI http://purl.obolibrary.org/obo/MS_1001275
Super-classes obo:MS_1001040c

ProteinScape Gelc # Classes

URI http://purl.obolibrary.org/obo/MS_1001276
Super-classes obo:MS_1001040c

decoy DB accession regexpc # Classes

URI http://purl.obolibrary.org/obo/MS_1001283
Super-classes obo:MS_1001450c

decoy DB derived fromc # Classes

URI http://purl.obolibrary.org/obo/MS_1001284
Description

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.
Super-classes obo:MS_1001450c

database IPI_mousec # Classes

URI http://purl.obolibrary.org/obo/MS_1001285
Super-classes obo:MS_1001013c

database IPI_ratc # Classes

URI http://purl.obolibrary.org/obo/MS_1001286
Super-classes obo:MS_1001013c

database IPI_zebrafishc # Classes

URI http://purl.obolibrary.org/obo/MS_1001287
Super-classes obo:MS_1001013c

database IPI_chickenc # Classes

URI http://purl.obolibrary.org/obo/MS_1001288
Super-classes obo:MS_1001013c

database IPI_cowc # Classes

URI http://purl.obolibrary.org/obo/MS_1001289
Super-classes obo:MS_1001013c

database IPI_arabidopsisc # Classes

URI http://purl.obolibrary.org/obo/MS_1001290
Super-classes obo:MS_1001013c

decoy DB from nrc # Classes

URI http://purl.obolibrary.org/obo/MS_1001291
Description

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from IPI_ratc # Classes

URI http://purl.obolibrary.org/obo/MS_1001292
Description

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from IPI_mousec # Classes

URI http://purl.obolibrary.org/obo/MS_1001293
Description

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from IPI_arabidopsisc # Classes

URI http://purl.obolibrary.org/obo/MS_1001294
Description

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from ESTc # Classes

URI http://purl.obolibrary.org/obo/MS_1001295
Description

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from IPI_zebrafishc # Classes

URI http://purl.obolibrary.org/obo/MS_1001296
Description

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from UniProtKB/Swiss-Protc # Classes

URI http://purl.obolibrary.org/obo/MS_1001297
Description

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from IPI_chickenc # Classes

URI http://purl.obolibrary.org/obo/MS_1001298
Description

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from IPI_cowc # Classes

URI http://purl.obolibrary.org/obo/MS_1001299
Description

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from IPI_humanc # Classes

URI http://purl.obolibrary.org/obo/MS_1001300
Description

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

protein rankc # Classes

URI http://purl.obolibrary.org/obo/MS_1001301
Super-classes obo:MS_1001085c

search engine specific input parameterc # Classes

URI http://purl.obolibrary.org/obo/MS_1001302
Super-classes obo:MS_1002093c
Sub-classes obo:MS_1002934c
obo:MS_1002095c
obo:MS_1002389c
obo:MS_1002099c
obo:MS_1002100c
obo:MS_1002421c
obo:MS_1002098c
obo:MS_1002101c
obo:MS_1002097c
obo:MS_1002912c
obo:MS_1002096c

Arg-Cc # Classes

URI http://purl.obolibrary.org/obo/MS_1001303
Super-classes obo:MS_1001045c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1001272c

Asp-Nc # Classes

URI http://purl.obolibrary.org/obo/MS_1001304
Super-classes obo:MS_1001045c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1001273c

Asp-N_ambicc # Classes

URI http://purl.obolibrary.org/obo/MS_1001305
Super-classes obo:MS_1001045c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1001274c

Chymotrypsinc # Classes

URI http://purl.obolibrary.org/obo/MS_1001306
Super-classes obo:MS_1001045c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1001332c

CNBrc # Classes

URI http://purl.obolibrary.org/obo/MS_1001307
Super-classes obo:MS_1001045c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1001333c

Formic_acidc # Classes

URI http://purl.obolibrary.org/obo/MS_1001308
Super-classes obo:MS_1001045c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1001334c

Lys-Cc # Classes

URI http://purl.obolibrary.org/obo/MS_1001309
Super-classes obo:MS_1001045c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1001335c

Lys-C/Pc # Classes

URI http://purl.obolibrary.org/obo/MS_1001310
Super-classes obo:MS_1001045c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1001336c

PepsinAc # Classes

URI http://purl.obolibrary.org/obo/MS_1001311
Super-classes obo:MS_1001045c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1001337c

TrypChymoc # Classes

URI http://purl.obolibrary.org/obo/MS_1001312
Super-classes obo:MS_1001045c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1001338c

Trypsin/Pc # Classes

URI http://purl.obolibrary.org/obo/MS_1001313
Super-classes obo:MS_1001045c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1001339c

V8-DEc # Classes

URI http://purl.obolibrary.org/obo/MS_1001314
Super-classes obo:MS_1001045c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1001340c

V8-Ec # Classes

URI http://purl.obolibrary.org/obo/MS_1001315
Super-classes obo:MS_1001045c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1001341c

Mascot:SigThresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1001316
Super-classes obo:MS_1002095c

Mascot:MaxProteinHitsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001317
Super-classes obo:MS_1002095c

Mascot:ProteinScoringMethodc # Classes

URI http://purl.obolibrary.org/obo/MS_1001318
Super-classes obo:MS_1002095c

Mascot:MinMSMSThresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1001319
Super-classes obo:MS_1002095c

Mascot:ShowHomologousProteinsWithSamePeptidesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001320
Super-classes obo:MS_1002095c

Mascot:ShowHomologousProteinsWithSubsetOfPeptidesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001321
Super-classes obo:MS_1002095c

Mascot:RequireBoldRedc # Classes

URI http://purl.obolibrary.org/obo/MS_1001322
Super-classes obo:MS_1002095c

Mascot:UseUnigeneClusteringc # Classes

URI http://purl.obolibrary.org/obo/MS_1001323
Super-classes obo:MS_1002095c

Mascot:IncludeErrorTolerantMatchesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001324
Super-classes obo:MS_1002095c

Mascot:ShowDecoyMatchesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001325
Super-classes obo:MS_1002095c

add_othersc # Classes

URI http://purl.obolibrary.org/obo/MS_1001326
Description

This former purgatory term was made obsolete.

OMSSA:evaluec # Classes

URI http://purl.obolibrary.org/obo/MS_1001328
Super-classes obo:MS_1001143c

OMSSA:pvaluec # Classes

URI http://purl.obolibrary.org/obo/MS_1001329
Super-classes obo:MS_1001143c

X!Tandem:expectc # Classes

URI http://purl.obolibrary.org/obo/MS_1001330
Super-classes obo:MS_1001143c

X!Tandem:hyperscorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001331
Super-classes obo:MS_1001143c

(?<=[FYWL])(?!P)c # Classes

URI http://purl.obolibrary.org/obo/MS_1001332
Super-classes obo:MS_1001180c

(?<=M)c # Classes

URI http://purl.obolibrary.org/obo/MS_1001333
Super-classes obo:MS_1001180c

((?<=D))|((?=D))c # Classes

URI http://purl.obolibrary.org/obo/MS_1001334
Super-classes obo:MS_1001180c

(?<=K)(?!P)c # Classes

URI http://purl.obolibrary.org/obo/MS_1001335
Super-classes obo:MS_1001180c

(?<=K)c # Classes

URI http://purl.obolibrary.org/obo/MS_1001336
Super-classes obo:MS_1001180c

(?<=[FL])c # Classes

URI http://purl.obolibrary.org/obo/MS_1001337
Super-classes obo:MS_1001180c

(?<=[FYWLKR])(?!P)c # Classes

URI http://purl.obolibrary.org/obo/MS_1001338
Super-classes obo:MS_1001180c

(?<=[KR])c # Classes

URI http://purl.obolibrary.org/obo/MS_1001339
Super-classes obo:MS_1001180c

(?<=[BDEZ])(?!P)c # Classes

URI http://purl.obolibrary.org/obo/MS_1001340
Super-classes obo:MS_1001180c

(?<=[EZ])(?!P)c # Classes

URI http://purl.obolibrary.org/obo/MS_1001341
Super-classes obo:MS_1001180c

database sequence detailsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001342
Super-classes obo:MS_1001011c
Sub-classes obo:MS_1001344c
obo:MS_1001089c
obo:MS_1001343c
obo:MS_1001088c

NA sequencec # Classes

URI http://purl.obolibrary.org/obo/MS_1001343
Super-classes obo:MS_1001342c

AA sequencec # Classes

URI http://purl.obolibrary.org/obo/MS_1001344
Super-classes obo:MS_1001342c

mass table sourcec # Classes

URI http://purl.obolibrary.org/obo/MS_1001345
Super-classes obo:MS_1001354c
Sub-classes obo:MS_1001346c

AAIndex mass tablec # Classes

URI http://purl.obolibrary.org/obo/MS_1001346
Super-classes obo:MS_1001345c

database file formatsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001347
Super-classes obo:MS_1001011c
Sub-classes obo:MS_1001462c
obo:MS_1001350c
obo:MS_1001349c
obo:MS_1001352c
obo:MS_1001348c
obo:MS_1001353c
obo:MS_1002659c
obo:MS_1002660c
obo:MS_1002751c
obo:MS_1001351c

FASTA formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001348
Super-classes obo:MS_1001347c

ASN.1c # Classes

URI http://purl.obolibrary.org/obo/MS_1001349
Super-classes obo:MS_1001347c

NCBI *.p*c # Classes

URI http://purl.obolibrary.org/obo/MS_1001350
Super-classes obo:MS_1001347c

clustal alnc # Classes

URI http://purl.obolibrary.org/obo/MS_1001351
Super-classes obo:MS_1001347c

embl emc # Classes

URI http://purl.obolibrary.org/obo/MS_1001352
Super-classes obo:MS_1001347c

NBRF PIRc # Classes

URI http://purl.obolibrary.org/obo/MS_1001353
Super-classes obo:MS_1001347c

mass table optionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001354
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001000c
Sub-classes obo:MS_1001345c

peptide descriptionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001355
Super-classes obo:MS_1001105c

spectrum descriptionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001356
Super-classes obo:MS_1001249c
Sub-classes obo:MS_1001357c

spectrum quality descriptionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001357
Super-classes obo:MS_1001356c
Sub-classes obo:MS_1001358c

msmsEval qualityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001358
Super-classes obo:MS_1001357c

ambiguous residuesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001359
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001000c
Sub-classes obo:MS_1001361c
obo:MS_1001360c

alternate single letter codesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001360
Super-classes obo:MS_1001359c

alternate massc # Classes

URI http://purl.obolibrary.org/obo/MS_1001361
Super-classes obo:MS_1001359c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000221c

number of unmatched peaksc # Classes

URI http://purl.obolibrary.org/obo/MS_1001362
Super-classes obo:MS_1002345c

peptide unique to one proteinc # Classes

URI http://purl.obolibrary.org/obo/MS_1001363
Super-classes obo:MS_1001127c

peptide sequence-level global FDRc # Classes

URI http://purl.obolibrary.org/obo/MS_1001364
Super-classes obo:MS_1002703c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c

frag: internal yb ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001365
Super-classes obo:MS_1002307c

frag: internal ya ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001366
Super-classes obo:MS_1002307c

frag: z+1 ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001367
Super-classes obo:MS_1002307c

frag: z+2 ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001368
Super-classes obo:MS_1002307c

text formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001369
Super-classes obo:MS_1000560c

Mascot:homology thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1001370
Super-classes obo:MS_1001143c

Mascot:identity thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1001371
Super-classes obo:MS_1001143c

SEQUEST:Sequencesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001372
Super-classes obo:MS_1002363c

SEQUEST:TICc # Classes

URI http://purl.obolibrary.org/obo/MS_1001373
Super-classes obo:MS_1002363c

SEQUEST:Sumc # Classes

URI http://purl.obolibrary.org/obo/MS_1001374
Super-classes obo:MS_1002363c

Phenyx:Instrument Typec # Classes

URI http://purl.obolibrary.org/obo/MS_1001375
Super-classes obo:MS_1002097c

Phenyx:Scoring Modelc # Classes

URI http://purl.obolibrary.org/obo/MS_1001376
Super-classes obo:MS_1002097c

Phenyx:Default Parent Chargec # Classes

URI http://purl.obolibrary.org/obo/MS_1001377
Super-classes obo:MS_1002097c

Phenyx:Trust Parent Chargec # Classes

URI http://purl.obolibrary.org/obo/MS_1001378
Super-classes obo:MS_1002097c

Phenyx:Turboc # Classes

URI http://purl.obolibrary.org/obo/MS_1001379
Super-classes obo:MS_1002097c

Phenyx:Turbo:ErrorTolc # Classes

URI http://purl.obolibrary.org/obo/MS_1001380
Super-classes obo:MS_1002097c

Phenyx:Turbo:Coveragec # Classes

URI http://purl.obolibrary.org/obo/MS_1001381
Super-classes obo:MS_1002097c

Phenyx:Turbo:Seriesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001382
Super-classes obo:MS_1002097c

Phenyx:MinPepLengthc # Classes

URI http://purl.obolibrary.org/obo/MS_1001383
Super-classes obo:MS_1002097c

Phenyx:MinPepzscorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001384
Super-classes obo:MS_1002097c

Phenyx:MaxPepPvaluec # Classes

URI http://purl.obolibrary.org/obo/MS_1001385
Super-classes obo:MS_1002097c

Phenyx:AC Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001386
Super-classes obo:MS_1002097c

Phenyx:Conflict Resolutionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001387
Super-classes obo:MS_1002097c

Phenyx:ACc # Classes

URI http://purl.obolibrary.org/obo/MS_1001388
Super-classes obo:MS_1002363c

Phenyx:IDc # Classes

URI http://purl.obolibrary.org/obo/MS_1001389
Super-classes obo:MS_1002363c

Phenyx:Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001390
Super-classes obo:MS_1002363c

Phenyx:Peptides1c # Classes

URI http://purl.obolibrary.org/obo/MS_1001391
Super-classes obo:MS_1002363c

Phenyx:Peptides2c # Classes

URI http://purl.obolibrary.org/obo/MS_1001392
Super-classes obo:MS_1002363c

Phenyx:Autoc # Classes

URI http://purl.obolibrary.org/obo/MS_1001393
Super-classes obo:MS_1001143c

Phenyx:Userc # Classes

URI http://purl.obolibrary.org/obo/MS_1001394
Super-classes obo:MS_1002363c
obo:MS_1001143c

Phenyx:Pepzscorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001395
Super-classes obo:MS_1001143c

Phenyx:PepPvaluec # Classes

URI http://purl.obolibrary.org/obo/MS_1001396
Super-classes obo:MS_1001143c
obo:MS_1002358c

Phenyx:NumberOfMCc # Classes

URI http://purl.obolibrary.org/obo/MS_1001397
Super-classes obo:MS_1001143c

Phenyx:Modifc # Classes

URI http://purl.obolibrary.org/obo/MS_1001398
Super-classes obo:MS_1002363c
obo:MS_1001143c

OMSSA csv formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001399
Super-classes obo:MS_1001040c

OMSSA xml formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001400
Super-classes obo:MS_1001040c

X!Tandem xml formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001401
Super-classes obo:MS_1001040c

spectrum identification result detailsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001405
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001000c
Sub-classes obo:MS_1000798c
obo:MS_1002339c
obo:MS_1001030c
obo:MS_1001184c
obo:MS_1000797c
obo:MS_1002555c
obo:MS_1002538c
obo:MS_1002315c
obo:MS_1002687c
obo:MS_1001975c
obo:MS_1002599c
obo:MS_1001414c
obo:MS_1001416c
obo:MS_1001976c
obo:MS_1001528c
obo:MS_1002380c
obo:MS_1000796c
obo:MS_1002894c
obo:MS_1002600c
obo:MS_1001415c

param: internal yb ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001406
Super-classes obo:MS_1002473c

param: internal ya ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001407
Super-classes obo:MS_1002473c

param: z+1 ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001408
Super-classes obo:MS_1002473c

param: z+2 ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001409
Super-classes obo:MS_1002473c

translation start codonsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001410
Super-classes obo:MS_1001011c

search tolerance specificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001411
Super-classes obo:MS_1001249c
Sub-classes obo:MS_1001413c
obo:MS_1001412c

search tolerance plus valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001412
Super-classes obo:MS_1001411c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000169c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000187c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000221c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000166c

search tolerance minus valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001413
Super-classes obo:MS_1001411c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000169c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000187c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000166c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000221c

MGF scansc # Classes

URI http://purl.obolibrary.org/obo/MS_1001414
Super-classes obo:MS_1001405c

MGF raw scansc # Classes

URI http://purl.obolibrary.org/obo/MS_1001415
Super-classes obo:MS_1001405c

spectrum titlec # Classes

URI http://purl.obolibrary.org/obo/MS_1001416
Super-classes obo:MS_1001405c

SpectraST:dotc # Classes

URI http://purl.obolibrary.org/obo/MS_1001417
Super-classes obo:MS_1001143c

SpectraST:dot_biasc # Classes

URI http://purl.obolibrary.org/obo/MS_1001418
Super-classes obo:MS_1001143c

SpectraST:discriminant score Fc # Classes

URI http://purl.obolibrary.org/obo/MS_1001419
Super-classes obo:MS_1001143c

SpectraST:deltac # Classes

URI http://purl.obolibrary.org/obo/MS_1001420
Super-classes obo:MS_1001143c

pepXML formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001421
Super-classes obo:MS_1001040c

protXML formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001422
Super-classes obo:MS_1001040c

translation table descriptionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001423
Super-classes obo:MS_1001011c

ProteinExtractor:Methodnamec # Classes

URI http://purl.obolibrary.org/obo/MS_1001424
Super-classes obo:MS_1002098c

ProteinExtractor:GenerateNonRedundantc # Classes

URI http://purl.obolibrary.org/obo/MS_1001425
Super-classes obo:MS_1002098c

ProteinExtractor:IncludeIdentifiedc # Classes

URI http://purl.obolibrary.org/obo/MS_1001426
Super-classes obo:MS_1002098c

ProteinExtractor:MaxNumberOfProteinsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001427
Super-classes obo:MS_1002098c

ProteinExtractor:MaxProteinMassc # Classes

URI http://purl.obolibrary.org/obo/MS_1001428
Super-classes obo:MS_1002098c

ProteinExtractor:MinNumberOfPeptidesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001429
Super-classes obo:MS_1002098c

ProteinExtractor:UseMascotc # Classes

URI http://purl.obolibrary.org/obo/MS_1001430
Super-classes obo:MS_1002098c

ProteinExtractor:MascotPeptideScoreThresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1001431
Super-classes obo:MS_1002098c

ProteinExtractor:MascotUniqueScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001432
Super-classes obo:MS_1002098c

ProteinExtractor:MascotUseIdentityScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001433
Super-classes obo:MS_1002098c

ProteinExtractor:MascotWeightingc # Classes

URI http://purl.obolibrary.org/obo/MS_1001434
Super-classes obo:MS_1002098c

ProteinExtractor:UseSequestc # Classes

URI http://purl.obolibrary.org/obo/MS_1001435
Super-classes obo:MS_1002098c

ProteinExtractor:SequestPeptideScoreThresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1001436
Super-classes obo:MS_1002098c

ProteinExtractor:SequestUniqueScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001437
Super-classes obo:MS_1002098c

ProteinExtractor:SequestWeightingc # Classes

URI http://purl.obolibrary.org/obo/MS_1001438
Super-classes obo:MS_1002098c

ProteinExtractor:UseProteinSolverc # Classes

URI http://purl.obolibrary.org/obo/MS_1001439
Super-classes obo:MS_1002098c

ProteinExtractor:ProteinSolverPeptideScoreThresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1001440
Super-classes obo:MS_1002098c

ProteinExtractor:ProteinSolverUniqueScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001441
Super-classes obo:MS_1002098c

ProteinExtractor:ProteinSolverWeightingc # Classes

URI http://purl.obolibrary.org/obo/MS_1001442
Super-classes obo:MS_1002098c

ProteinExtractor:UsePhenyxc # Classes

URI http://purl.obolibrary.org/obo/MS_1001443
Super-classes obo:MS_1002098c

ProteinExtractor:PhenyxPeptideScoreThresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1001444
Super-classes obo:MS_1002098c

ProteinExtractor:PhenyxUniqueScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001445
Super-classes obo:MS_1002098c

ProteinExtractor:PhenyxWeightingc # Classes

URI http://purl.obolibrary.org/obo/MS_1001446
Super-classes obo:MS_1002098c

prot:FDR thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1001447
Super-classes obo:MS_1002485c

pep:FDR thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1001448
Super-classes obo:MS_1002484c

OMSSA e-value thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1001449
Super-classes obo:MS_1002099c

decoy DB detailsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001450
Super-classes obo:MS_1001011c
Sub-classes obo:MS_1001197c
obo:MS_1001452c
obo:MS_1001284c
obo:MS_1001196c
obo:MS_1001453c
obo:MS_1001283c
obo:MS_1001195c
obo:MS_1001451c

decoy DB generation algorithmc # Classes

URI http://purl.obolibrary.org/obo/MS_1001451
Super-classes obo:MS_1001450c

decoy DB type shufflec # Classes

URI http://purl.obolibrary.org/obo/MS_1001452
Super-classes obo:MS_1001450c

DB composition only decoyc # Classes

URI http://purl.obolibrary.org/obo/MS_1001453
Super-classes obo:MS_1001450c

quality estimation with implicite decoy sequencesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001454
Super-classes obo:MS_1001060c

acquisition softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1001455
Super-classes obo:MS_1000531c
Sub-classes obo:MS_1000661c
obo:MS_1000539c
obo:MS_1002381c
obo:MS_1000551c
obo:MS_1000534c
obo:MS_1001877c
obo:MS_1001799c
obo:MS_1000720c
obo:MS_1001558c
obo:MS_1000536c
obo:MS_1000540c
obo:MS_1000688c
obo:MS_1000721c
obo:MS_1000725c
obo:MS_1000678c
obo:MS_1000659c
obo:MS_1000679c
obo:MS_1000726c
obo:MS_1000537c
obo:MS_1000706c
obo:MS_1001483c
obo:MS_1000737c
obo:MS_1000532c

analysis softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1001456
Super-classes obo:MS_1000531c
Sub-classes obo:MS_1000682c
obo:MS_1002902c
obo:MS_1001585c
obo:MS_1002870c
obo:MS_1002458c
obo:MS_1002286c
obo:MS_1001946c
obo:MS_1002598c
obo:MS_1002871c
obo:MS_1002251c
obo:MS_1002901c
obo:MS_1001558c
obo:MS_1000670c
obo:MS_1002076c
obo:MS_1001984c
obo:MS_1000688c
obo:MS_1002544c
obo:MS_1000536c
obo:MS_1002210c
obo:MS_1000714c
obo:MS_1003011c
obo:MS_1002661c
obo:MS_1000669c
obo:MS_1000659c
obo:MS_1000683c
obo:MS_1000728c
obo:MS_1000671c
obo:MS_1002285c
obo:MS_1001587c
obo:MS_1000537c
obo:MS_1001977c
obo:MS_1002984c
obo:MS_1001487c
obo:MS_1000601c
obo:MS_1001477c
obo:MS_1000713c
obo:MS_1000533c
obo:MS_1002596c
obo:MS_1002043c
obo:MS_1001476c
obo:MS_1000707c
obo:MS_1000666c
obo:MS_1002903c
obo:MS_1000664c
obo:MS_1001208c
obo:MS_1002546c
obo:MS_1000752c
obo:MS_1000712c
obo:MS_1001483c
obo:MS_1002387c
obo:MS_1002987c
obo:MS_1002543c
obo:MS_1002048c
obo:MS_1001912c
obo:MS_1000685c
obo:MS_1001583c
obo:MS_1002047c
obo:MS_1002982c
obo:MS_1000734c
obo:MS_1002237c
obo:MS_1002645c
obo:MS_1000665c
obo:MS_1002575c
obo:MS_1001209c
obo:MS_1001461c
obo:MS_1001588c
obo:MS_1001796c
obo:MS_1000681c
obo:MS_1002336c
obo:MS_1000736c
obo:MS_1003014c
obo:MS_1000687c
obo:MS_1001207c
obo:MS_1000684c
obo:MS_1002337c
obo:MS_1001947c
obo:MS_1000615c
obo:MS_1000661c
obo:MS_1002384c
obo:MS_1000715c
obo:MS_1001561c
obo:MS_1000532c
obo:MS_1001488c
obo:MS_1000539c
obo:MS_1002878c
obo:MS_1000680c
obo:MS_1001795c
obo:MS_1000686c
obo:MS_1000722c
obo:MS_1000667c
obo:MS_1002261c
obo:MS_1000663c
obo:MS_1001489c
obo:MS_1003018c
obo:MS_1002381c
obo:MS_1002981c
obo:MS_1002720c
obo:MS_1000674c
obo:MS_1000551c
obo:MS_1000662c
obo:MS_1002452c
obo:MS_1001973c
obo:MS_1003013c
obo:MS_1001582c
obo:MS_1002342c
obo:MS_1001948c
obo:MS_1001478c
obo:MS_1001586c
obo:MS_1001490c
obo:MS_1001475c
obo:MS_1002869c
obo:MS_1000534c
obo:MS_1000600c
obo:MS_1002983c
obo:MS_1000708c
obo:MS_1000650c
obo:MS_1001877c
obo:MS_1002826c
obo:MS_1000668c
obo:MS_1002750c
obo:MS_1001886c
obo:MS_1000719c
obo:MS_1001799c
obo:MS_1002344c
obo:MS_1000709c
obo:MS_1000535c

data processing softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1001457
Super-classes obo:MS_1000531c
Sub-classes obo:MS_1002414c
obo:MS_1000537c
obo:MS_1000718c
obo:MS_1002968c
obo:MS_1000713c
obo:MS_1000533c
obo:MS_1001912c
obo:MS_1000707c
obo:MS_1000666c
obo:MS_1002976c
obo:MS_1000752c
obo:MS_1000712c
obo:MS_1002990c
obo:MS_1002524c
obo:MS_1002645c
obo:MS_1002969c
obo:MS_1001796c
obo:MS_1000681c
obo:MS_1001483c
obo:MS_1000736c
obo:MS_1002974c
obo:MS_1000684c
obo:MS_1000685c
obo:MS_1000532c
obo:MS_1000665c
obo:MS_1002979c
obo:MS_1000538c
obo:MS_1000687c
obo:MS_1001947c
obo:MS_1003010c
obo:MS_1000680c
obo:MS_1000615c
obo:MS_1000661c
obo:MS_1002384c
obo:MS_1000715c
obo:MS_1001914c
obo:MS_1001795c
obo:MS_1000539c
obo:MS_1000663c
obo:MS_1002972c
obo:MS_1000717c
obo:MS_1000686c
obo:MS_1000722c
obo:MS_1000667c
obo:MS_1002342c
obo:MS_1002381c
obo:MS_1002971c
obo:MS_1002978c
obo:MS_1002975c
obo:MS_1000674c
obo:MS_1000551c
obo:MS_1000662c
obo:MS_1002452c
obo:MS_1000541c
obo:MS_1000553c
obo:MS_1002980c
obo:MS_1001582c
obo:MS_1000668c
obo:MS_1000591c
obo:MS_1001948c
obo:MS_1002977c
obo:MS_1002869c
obo:MS_1002870c
obo:MS_1000534c
obo:MS_1001946c
obo:MS_1000600c
obo:MS_1002965c
obo:MS_1000708c
obo:MS_1000650c
obo:MS_1001877c
obo:MS_1001558c
obo:MS_1001886c
obo:MS_1000719c
obo:MS_1001799c
obo:MS_1002344c
obo:MS_1000536c
obo:MS_1000709c
obo:MS_1000535c
obo:MS_1000682c
obo:MS_1000714c
obo:MS_1002871c
obo:MS_1002970c
obo:MS_1000670c
obo:MS_1002967c
obo:MS_1000688c
obo:MS_1002386c
obo:MS_1000728c
obo:MS_1002333c
obo:MS_1000601c
obo:MS_1000669c
obo:MS_1000659c
obo:MS_1000683c
obo:MS_1003082c
obo:MS_1000542c
obo:MS_1000671c
obo:MS_1000664c
obo:MS_1002973c

spectrum generation informationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001458
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_0000000c
Sub-classes obo:MS_1002844c
obo:MS_1002046c

file formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001459
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_0000000c
Sub-classes obo:MS_1002074c
obo:MS_1002442c
obo:MS_1001040c
obo:MS_1002128c
obo:MS_1002822c
obo:MS_1000560c
obo:MS_1002130c

unknown modificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001460
Super-classes obo:MS_1001471c

greylagc # Classes

URI http://purl.obolibrary.org/obo/MS_1001461
Super-classes obo:MS_1001456c

PEFF formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001462
Super-classes obo:MS_1001347c

Phenyx XML formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001463
Super-classes obo:MS_1000560c
obo:MS_1001040c

DTASelect formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001464
Super-classes obo:MS_1001040c

MS2 formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001466
Super-classes obo:MS_1000560c

taxonomy: NCBI TaxIDc # Classes

URI http://purl.obolibrary.org/obo/MS_1001467
Super-classes obo:MS_1001089c

taxonomy: common namec # Classes

URI http://purl.obolibrary.org/obo/MS_1001468
Super-classes obo:MS_1001089c

taxonomy: scientific namec # Classes

URI http://purl.obolibrary.org/obo/MS_1001469
Super-classes obo:MS_1001089c

taxonomy: Swiss-Prot IDc # Classes

URI http://purl.obolibrary.org/obo/MS_1001470
Super-classes obo:MS_1001089c

peptide modification detailsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001471
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001000c
Sub-classes obo:MS_1002029c
obo:MS_1002030c
obo:MS_1001972c
obo:MS_1001525c
obo:MS_1001524c
obo:MS_1001460c
obo:MS_1003081c
obo:MS_1002028c

selected ion monitoring chromatogramc # Classes

URI http://purl.obolibrary.org/obo/MS_1001472
Super-classes obo:MS_1000810c

selected reaction monitoring chromatogramc # Classes

URI http://purl.obolibrary.org/obo/MS_1001473
Super-classes obo:MS_1000810c

consecutive reaction monitoring chromatogramc # Classes

URI http://purl.obolibrary.org/obo/MS_1001474
Description

This term was made obsolete because, by design, it can't be properly represented in mzML 1.1. CRM experiments must be represented in a spectrum-centric way.
Super-classes obo:MS_1000810c

OMSSAc # Classes

URI http://purl.obolibrary.org/obo/MS_1001475
Super-classes obo:MS_1001456c

X!Tandemc # Classes

URI http://purl.obolibrary.org/obo/MS_1001476
Super-classes obo:MS_1001456c

SpectraSTc # Classes

URI http://purl.obolibrary.org/obo/MS_1001477
Super-classes obo:MS_1001456c

Mascot Parserc # Classes

URI http://purl.obolibrary.org/obo/MS_1001478
Super-classes obo:MS_1001456c

null-terminated ASCII stringc # Classes

URI http://purl.obolibrary.org/obo/MS_1001479
Super-classes obo:MS_1000518c

SCIEX TOF/TOF nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001480
Super-classes obo:MS_1000767c

SCIEX TOF/TOF databasec # Classes

URI http://purl.obolibrary.org/obo/MS_1001481
Super-classes obo:MS_1000560c

5800 TOF/TOFc # Classes

URI http://purl.obolibrary.org/obo/MS_1001482
Super-classes obo:MS_1000121c

SCIEX TOF/TOF Series Explorer Softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1001483
Super-classes obo:MS_1000690c
obo:MS_1001457c
obo:MS_1001456c
obo:MS_1001455c

intensity normalizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001484
Super-classes obo:MS_1000543c
Sub-classes obo:MS_1001999c

m/z calibrationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001485
Super-classes obo:MS_1000543c

data filteringc # Classes

URI http://purl.obolibrary.org/obo/MS_1001486
Super-classes obo:MS_1000543c
Sub-classes obo:MS_1000746c
obo:MS_1000594c

ProteinExtractorc # Classes

URI http://purl.obolibrary.org/obo/MS_1001487
Super-classes obo:MS_1001456c
obo:MS_1000692c

Mascot Distillerc # Classes

URI http://purl.obolibrary.org/obo/MS_1001488
Super-classes obo:MS_1001139c
obo:MS_1001456c

Mascot Integrac # Classes

URI http://purl.obolibrary.org/obo/MS_1001489
Super-classes obo:MS_1001456c

Percolatorc # Classes

URI http://purl.obolibrary.org/obo/MS_1001490
Super-classes obo:MS_1001456c

percolator:Q valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001491
Super-classes obo:MS_1001143c

percolator:scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001492
Super-classes obo:MS_1001143c

percolator:PEPc # Classes

URI http://purl.obolibrary.org/obo/MS_1001493
Super-classes obo:MS_1001143c

no thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1001494
Super-classes obo:MS_1002482c

ProteinScape:SearchResultIdc # Classes

URI http://purl.obolibrary.org/obo/MS_1001495
Super-classes obo:MS_1001143c

ProteinScape:SearchEventIdc # Classes

URI http://purl.obolibrary.org/obo/MS_1001496
Super-classes obo:MS_1001143c

ProteinScape:ProfoundProbabilityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001497
Super-classes obo:MS_1001143c

Profound:z valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001498
Super-classes obo:MS_1001143c

Profound:Clusterc # Classes

URI http://purl.obolibrary.org/obo/MS_1001499
Super-classes obo:MS_1001143c

Profound:ClusterRankc # Classes

URI http://purl.obolibrary.org/obo/MS_1001500
Super-classes obo:MS_1001143c

MSFit:Mowse scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001501
Super-classes obo:MS_1001143c

Sonar:Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001502
Super-classes obo:MS_1001143c

ProteinScape:PFFSolverExpc # Classes

URI http://purl.obolibrary.org/obo/MS_1001503
Super-classes obo:MS_1001143c

ProteinScape:PFFSolverScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001504
Super-classes obo:MS_1001143c

ProteinScape:IntensityCoveragec # Classes

URI http://purl.obolibrary.org/obo/MS_1001505
Super-classes obo:MS_1001143c

ProteinScape:SequestMetaScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001506
Super-classes obo:MS_1001143c

ProteinExtractor:Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001507
Super-classes obo:MS_1002363c

Agilent MassHunter nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001508
Super-classes obo:MS_1000767c

Agilent MassHunter formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001509
Super-classes obo:MS_1000560c

TSQ Vantagec # Classes

URI http://purl.obolibrary.org/obo/MS_1001510
Super-classes obo:MS_1000494c

Sequence database filter typesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001511
Super-classes obo:MS_1001019c
Sub-classes obo:MS_1001027c
obo:MS_1001021c
obo:MS_1001022c
obo:MS_1001020c
obo:MS_1001023c

Sequence database filtersc # Classes

URI http://purl.obolibrary.org/obo/MS_1001512
Super-classes obo:MS_1001019c
Sub-classes obo:MS_1001513c
obo:MS_1001202c
obo:MS_1001089c
obo:MS_1001201c
obo:MS_1001203c
obo:MS_1001514c
obo:MS_1001204c

DB sequence filter patternc # Classes

URI http://purl.obolibrary.org/obo/MS_1001513
Super-classes obo:MS_1001512c

DB accession filter stringc # Classes

URI http://purl.obolibrary.org/obo/MS_1001514
Super-classes obo:MS_1001512c

frag: c ion - H2Oc # Classes

URI http://purl.obolibrary.org/obo/MS_1001515
Super-classes obo:MS_1002307c

frag: c ion - NH3c # Classes

URI http://purl.obolibrary.org/obo/MS_1001516
Super-classes obo:MS_1002307c

frag: z ion - H2Oc # Classes

URI http://purl.obolibrary.org/obo/MS_1001517
Super-classes obo:MS_1002307c

frag: z ion - NH3c # Classes

URI http://purl.obolibrary.org/obo/MS_1001518
Super-classes obo:MS_1002307c

frag: x ion - H2Oc # Classes

URI http://purl.obolibrary.org/obo/MS_1001519
Super-classes obo:MS_1002307c

frag: x ion - NH3c # Classes

URI http://purl.obolibrary.org/obo/MS_1001520
Super-classes obo:MS_1002307c

frag: precursor ion - H2Oc # Classes

URI http://purl.obolibrary.org/obo/MS_1001521
Super-classes obo:MS_1002307c

frag: precursor ion - NH3c # Classes

URI http://purl.obolibrary.org/obo/MS_1001522
Super-classes obo:MS_1002307c

frag: precursor ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001523
Super-classes obo:MS_1002307c

fragment neutral lossc # Classes

URI http://purl.obolibrary.org/obo/MS_1001524
Super-classes obo:MS_1001471c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000221c

precursor neutral lossc # Classes

URI http://purl.obolibrary.org/obo/MS_1001525
Super-classes obo:MS_1001471c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000221c

spectrum from database integer nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001526
Description

A unique identifier of a spectrum stored in a database (e.g. a PRIMARY KEY identifier).
Super-classes obo:MS_1000767c

Proteinscape spectrac # Classes

URI http://purl.obolibrary.org/obo/MS_1001527
Super-classes obo:MS_1000560c

Mascot query numberc # Classes

URI http://purl.obolibrary.org/obo/MS_1001528
Description

The spectrum (query) number in a Mascot results file, starting from 1.
Super-classes obo:MS_1000767c
obo:MS_1001405c

spectra data detailsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001529
Super-classes obo:MS_1001249c
Sub-classes obo:MS_1001532c
obo:MS_1001531c
obo:MS_1001530c

mzML unique identifierc # Classes

URI http://purl.obolibrary.org/obo/MS_1001530
Description

A unique identifier of a spectrum stored in an mzML file.
Super-classes obo:MS_1001529c

spectrum from ProteinScape database nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001531
Description

A unique identifier of a spectrum stored in a ProteinScape database.
Super-classes obo:MS_1001529c
obo:MS_1000767c

spectrum from database string nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001532
Description

A unique identifier of a spectrum stored in a database (e.g. a PRIMARY KEY identifier).
Super-classes obo:MS_1001529c
obo:MS_1000767c

Bruker Daltonics esquire seriesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001533
Super-classes obo:MS_1000122c
Sub-classes obo:MS_1000156c
obo:MS_1000157c

Bruker Daltonics flex seriesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001534
Super-classes obo:MS_1000122c
Sub-classes obo:MS_1001554c
obo:MS_1000183c
obo:MS_1001543c
obo:MS_1000696c
obo:MS_1000148c
obo:MS_1000149c
obo:MS_1000201c
obo:MS_1001553c
obo:MS_1001544c
obo:MS_1000177c
obo:MS_1001550c
obo:MS_1001555c
obo:MS_1000701c
obo:MS_1000705c
obo:MS_1000202c

Bruker Daltonics BioTOF seriesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001535
Super-classes obo:MS_1000122c
Sub-classes obo:MS_1000152c
obo:MS_1001538c
obo:MS_1001537c
obo:MS_1000151c
obo:MS_1001539c

Bruker Daltonics micrOTOF seriesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001536
Super-classes obo:MS_1000122c
Sub-classes obo:MS_1002280c
obo:MS_1000178c
obo:MS_1000702c
obo:MS_1002667c
obo:MS_1000704c
obo:MS_1002077c
obo:MS_1002666c
obo:MS_1000703c
obo:MS_1001540c
obo:MS_1002299c

BioTOFc # Classes

URI http://purl.obolibrary.org/obo/MS_1001537
Super-classes obo:MS_1001535c

BioTOF IIIc # Classes

URI http://purl.obolibrary.org/obo/MS_1001538
Super-classes obo:MS_1001535c

UltroTOF-Qc # Classes

URI http://purl.obolibrary.org/obo/MS_1001539
Super-classes obo:MS_1001535c

micrOTOF IIc # Classes

URI http://purl.obolibrary.org/obo/MS_1001540
Super-classes obo:MS_1001536c

maXisc # Classes

URI http://purl.obolibrary.org/obo/MS_1001541
Super-classes obo:MS_1001547c

amaZon ETDc # Classes

URI http://purl.obolibrary.org/obo/MS_1001542
Super-classes obo:MS_1001545c

microflex LRFc # Classes

URI http://purl.obolibrary.org/obo/MS_1001543
Super-classes obo:MS_1001534c

ultrafleXtremec # Classes

URI http://purl.obolibrary.org/obo/MS_1001544
Super-classes obo:MS_1001534c

Bruker Daltonics amaZon seriesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001545
Super-classes obo:MS_1000122c
Sub-classes obo:MS_1002301c
obo:MS_1001546c
obo:MS_1001542c
obo:MS_1002300c

amaZon Xc # Classes

URI http://purl.obolibrary.org/obo/MS_1001546
Super-classes obo:MS_1001545c

Bruker Daltonics maXis seriesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001547
Super-classes obo:MS_1000122c
Sub-classes obo:MS_1002279c
obo:MS_1001541c
obo:MS_1003004c

Bruker Daltonics solarix seriesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001548
Super-classes obo:MS_1000122c
Sub-classes obo:MS_1001549c

solariXc # Classes

URI http://purl.obolibrary.org/obo/MS_1001549
Super-classes obo:MS_1001548c

microflex IIc # Classes

URI http://purl.obolibrary.org/obo/MS_1001550
Super-classes obo:MS_1001534c

autoflex II TOF/TOFc # Classes

URI http://purl.obolibrary.org/obo/MS_1001553
Super-classes obo:MS_1001534c

autoflex III TOF/TOF smartbeamc # Classes

URI http://purl.obolibrary.org/obo/MS_1001554
Super-classes obo:MS_1001534c

autoflexc # Classes

URI http://purl.obolibrary.org/obo/MS_1001555
Super-classes obo:MS_1001534c

Bruker Daltonics apex seriesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001556
Super-classes obo:MS_1000122c
Sub-classes obo:MS_1000695c
obo:MS_1000141c
obo:MS_1000142c

Shimadzu Corporation softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1001557
Super-classes obo:MS_1000531c
Sub-classes obo:MS_1002381c
obo:MS_1001558c

MALDI Solutionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001558
Super-classes obo:MS_1001456c
obo:MS_1001557c
obo:MS_1001455c
obo:MS_1001457c
Sub-classes obo:MS_1001878c

SCIEX TOF/TOF T2D nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001559
Super-classes obo:MS_1000767c

SCIEX TOF/TOF T2D formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001560
Super-classes obo:MS_1000560c

Scaffoldc # Classes

URI http://purl.obolibrary.org/obo/MS_1001561
Super-classes obo:MS_1001456c

Scaffold nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001562
Super-classes obo:MS_1000767c

SEQUEST SQT formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001563
Super-classes obo:MS_1001040c

Discoverer MSF formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001564
Super-classes obo:MS_1001040c

IdentityE XML formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001565
Super-classes obo:MS_1001040c

ProteinLynx XML formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001566
Super-classes obo:MS_1001040c

SpectrumMill directoriesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001567
Super-classes obo:MS_1001040c

Scaffold:Peptide Probabilityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001568
Super-classes obo:MS_1001143c

IdentityE Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001569
Super-classes obo:MS_1001143c

ProteinLynx:Log Likelihoodc # Classes

URI http://purl.obolibrary.org/obo/MS_1001570
Super-classes obo:MS_1001143c

ProteinLynx:Ladder Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001571
Super-classes obo:MS_1001143c

SpectrumMill:Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001572
Super-classes obo:MS_1001143c

SpectrumMill:SPIc # Classes

URI http://purl.obolibrary.org/obo/MS_1001573
Super-classes obo:MS_1001143c

report only spectra assigned to identified proteinsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001574
Super-classes obo:MS_1001060c

Scaffold: Minimum Peptide Countc # Classes

URI http://purl.obolibrary.org/obo/MS_1001575
Super-classes obo:MS_1002106c

Scaffold: Minimum Protein Probabilityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001576
Super-classes obo:MS_1002106c

Scaffold: Minimum Peptide Probabilityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001577
Super-classes obo:MS_1002106c

minimum number of enzymatic terminic # Classes

URI http://purl.obolibrary.org/obo/MS_1001578
Super-classes obo:MS_1002094c

Scaffold:Protein Probabilityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001579
Super-classes obo:MS_1002363c

SpectrumMill:Discriminant Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001580
Super-classes obo:MS_1001143c

FAIMS compensation voltagec # Classes

URI http://purl.obolibrary.org/obo/MS_1001581
Super-classes obo:MS_1002892c

XCMSc # Classes

URI http://purl.obolibrary.org/obo/MS_1001582
Super-classes obo:MS_1001457c
obo:MS_1001456c

MaxQuantc # Classes

URI http://purl.obolibrary.org/obo/MS_1001583
Super-classes obo:MS_1001139c
obo:MS_1001456c

combined pmf + ms-ms searchc # Classes

URI http://purl.obolibrary.org/obo/MS_1001584
Super-classes obo:MS_1001080c

MyriMatchc # Classes

URI http://purl.obolibrary.org/obo/MS_1001585
Super-classes obo:MS_1001456c

DirecTagc # Classes

URI http://purl.obolibrary.org/obo/MS_1001586
Super-classes obo:MS_1001456c

TagReconc # Classes

URI http://purl.obolibrary.org/obo/MS_1001587
Super-classes obo:MS_1001456c

Pepitomec # Classes

URI http://purl.obolibrary.org/obo/MS_1001588
Super-classes obo:MS_1001456c

MyriMatch:MVHc # Classes

URI http://purl.obolibrary.org/obo/MS_1001589
Super-classes obo:MS_1001143c

MyriMatch:mzFidelityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001590
Super-classes obo:MS_1001143c

anchor proteinc # Classes

URI http://purl.obolibrary.org/obo/MS_1001591
Super-classes obo:MS_1001101c

family member proteinc # Classes

URI http://purl.obolibrary.org/obo/MS_1001592
Super-classes obo:MS_1001101c

group member with undefined relationship OR ortholog proteinc # Classes

URI http://purl.obolibrary.org/obo/MS_1001593
Super-classes obo:MS_1001101c

sequence same-set proteinc # Classes

URI http://purl.obolibrary.org/obo/MS_1001594
Super-classes obo:MS_1001101c

spectrum same-set proteinc # Classes

URI http://purl.obolibrary.org/obo/MS_1001595
Super-classes obo:MS_1001101c

sequence sub-set proteinc # Classes

URI http://purl.obolibrary.org/obo/MS_1001596
Super-classes obo:MS_1001101c

spectrum sub-set proteinc # Classes

URI http://purl.obolibrary.org/obo/MS_1001597
Super-classes obo:MS_1001101c

sequence subsumable proteinc # Classes

URI http://purl.obolibrary.org/obo/MS_1001598
Super-classes obo:MS_1001101c

spectrum subsumable proteinc # Classes

URI http://purl.obolibrary.org/obo/MS_1001599
Super-classes obo:MS_1001101c

protein inference confidence categoryc # Classes

URI http://purl.obolibrary.org/obo/MS_1001600
Super-classes obo:MS_1001101c
Sub-classes obo:MS_1002216c
obo:MS_1002215c
obo:MS_1002213c
obo:MS_1002214c

ProteomeDiscoverer:Spectrum Files:Raw File namesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001601
Description

This term was made obsolete because it's recommended to use one of the 'mass spectrometer file format' terms (MS:1000560) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SRF File Selector:SRF File Pathc # Classes

URI http://purl.obolibrary.org/obo/MS_1001602
Description

This term was made obsolete. Use attribute in mzIdentML / mzQuantML instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Spectrum Selector:Ionization Sourcec # Classes

URI http://purl.obolibrary.org/obo/MS_1001603
Description

This term was made obsolete because it's recommended to use one of the 'inlet type' (MS:1000007) or 'ionization type' (MS:1000008) terms instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Activation Typec # Classes

URI http://purl.obolibrary.org/obo/MS_1001604
Description

This term was made obsolete because it's recommended to use one of the 'ionization type' terms (MS:1000008) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Spectrum Selector:Lower RT Limitc # Classes

URI http://purl.obolibrary.org/obo/MS_1001605
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Mass Analyzerc # Classes

URI http://purl.obolibrary.org/obo/MS_1001606
Description

This term was made obsolete because it's recommended to use mass analyzer type (MS:1000443) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Max Precursor Massc # Classes

URI http://purl.obolibrary.org/obo/MS_1001607
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Min Precursor Massc # Classes

URI http://purl.obolibrary.org/obo/MS_1001608
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Spectrum Selector:Minimum Peak Countc # Classes

URI http://purl.obolibrary.org/obo/MS_1001609
Super-classes obo:MS_1002101c

ProteomeDiscoverer:MS Orderc # Classes

URI http://purl.obolibrary.org/obo/MS_1001610
Description

This term was made obsolete because it's recommended to use MS1 spectrum (MS:1000579) or MSn spectrum (MS:1000580) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Polarity Modec # Classes

URI http://purl.obolibrary.org/obo/MS_1001611
Description

This term was made obsolete because it's recommended to use scan polarity (MS:1000465) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Spectrum Selector:Precursor Selectionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001612
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SN Thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1001613
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Scan Typec # Classes

URI http://purl.obolibrary.org/obo/MS_1001614
Description

This term was made obsolete because it's recommended to use MS1 spectrum (MS:1000579), MSn spectrum (MS:1000580), CRM spectrum (MS:1000581), SIM spectrum (MS:1000582) or SRM spectrum (MS:1000583) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Spectrum Selector:Total Intensity Thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1001615
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Spectrum Selector:Unrecognized Activation Type Replacementsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001616
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Spectrum Selector:Unrecognized Charge Replacementsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001617
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Spectrum Selector:Unrecognized Mass Analyzer Replacementsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001618
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Spectrum Selector:Unrecognized MS Order Replacementsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001619
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Spectrum Selector:Unrecognized Polarity Replacementsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001620
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Spectrum Selector:Upper RT Limitc # Classes

URI http://purl.obolibrary.org/obo/MS_1001621
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Non-Fragment Filter:Mass Window Offsetc # Classes

URI http://purl.obolibrary.org/obo/MS_1001622
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Non-Fragment Filter:Maximum Neutral Loss Massc # Classes

URI http://purl.obolibrary.org/obo/MS_1001623
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Non-Fragment Filter:Remove Charge Reduced Precursorc # Classes

URI http://purl.obolibrary.org/obo/MS_1001624
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Non-Fragment Filter:Remove Neutral Loss Peaksc # Classes

URI http://purl.obolibrary.org/obo/MS_1001625
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Non-Fragment Filter:Remove Only Known Massesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001626
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Overtonesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001627
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Peakc # Classes

URI http://purl.obolibrary.org/obo/MS_1001628
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Spectrum Grouper:Allow Mass Analyzer Mismatchc # Classes

URI http://purl.obolibrary.org/obo/MS_1001629
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Spectrum Grouper:Allow MS Order Mismatchc # Classes

URI http://purl.obolibrary.org/obo/MS_1001630
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Spectrum Grouper:Max RT Differencec # Classes

URI http://purl.obolibrary.org/obo/MS_1001631
Description

This term was made obsolete because it's recommended to use retention time window width (MS:1001907) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Spectrum Grouper:Precursor Mass Criterionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001632
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Xtract:Highest Chargec # Classes

URI http://purl.obolibrary.org/obo/MS_1001633
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Xtract:Highest MZc # Classes

URI http://purl.obolibrary.org/obo/MS_1001634
Description

This term was made obsolete because it's recommended to use scan window upper limit (MS:1000500) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Xtract:Lowest Chargec # Classes

URI http://purl.obolibrary.org/obo/MS_1001635
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Xtract:Lowest MZc # Classes

URI http://purl.obolibrary.org/obo/MS_1001636
Description

This term was made obsolete because it's recommended to use scan window lower limit (MS:1000501) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Xtract:Monoisotopic Mass Onlyc # Classes

URI http://purl.obolibrary.org/obo/MS_1001637
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Xtract:Overlapping Remainderc # Classes

URI http://purl.obolibrary.org/obo/MS_1001638
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Xtract:Required Fitting Accuracyc # Classes

URI http://purl.obolibrary.org/obo/MS_1001639
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Xtract:Resolution At 400c # Classes

URI http://purl.obolibrary.org/obo/MS_1001640
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Lowest Charge Statec # Classes

URI http://purl.obolibrary.org/obo/MS_1001641
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Highest Charge Statec # Classes

URI http://purl.obolibrary.org/obo/MS_1001642
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Spectrum Score Filter:Let Pass Above Scoresc # Classes

URI http://purl.obolibrary.org/obo/MS_1001643
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Dynamic Modificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001644
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Static Modificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001645
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Mascot:Decoy Searchc # Classes

URI http://purl.obolibrary.org/obo/MS_1001646
Description

This term was made obsolete because it's recommended to use quality estimation with decoy database (MS:1001194) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Mascot:Error tolerant Searchc # Classes

URI http://purl.obolibrary.org/obo/MS_1001647
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Mascot:Max MGF File Sizec # Classes

URI http://purl.obolibrary.org/obo/MS_1001648
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Mascot:Mascot Server URLc # Classes

URI http://purl.obolibrary.org/obo/MS_1001649
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Mascot:Number of attempts to submit the searchc # Classes

URI http://purl.obolibrary.org/obo/MS_1001650
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Mascot:X Static Modificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001651
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Mascot:User Namec # Classes

URI http://purl.obolibrary.org/obo/MS_1001652
Description

This term was made obsolete because it's recommended to use researcher (MS:1001271) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Mascot:Time interval between attempts to submit a searchc # Classes

URI http://purl.obolibrary.org/obo/MS_1001653
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Enzyme Namec # Classes

URI http://purl.obolibrary.org/obo/MS_1001654
Description

This term was made obsolete because it's recommended to use cleavage agent name (MS:1001045) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Fragment Mass Tolerancec # Classes

URI http://purl.obolibrary.org/obo/MS_1001655
Description

This term was made obsolete because it's recommended to use search tolerance minus value (MS:1001413) or search tolerance plus value (MS:1001412) instead.
Super-classes obo:MS_1002101c

Mascot:Instrumentc # Classes

URI http://purl.obolibrary.org/obo/MS_1001656
Super-classes obo:MS_1002095c

ProteomeDiscoverer:Maximum Missed Cleavage Sitesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001657
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Mascot:Peptide CutOff Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001658
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Precursor Mass Tolerancec # Classes

URI http://purl.obolibrary.org/obo/MS_1001659
Description

This term was made obsolete because it's recommended to use search tolerance minus value (MS:1001413) or search tolerance plus value (MS:1001412) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Mascot:Protein CutOff Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001660
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Protein Databasec # Classes

URI http://purl.obolibrary.org/obo/MS_1001661
Description

This term was made obsolete because it's recommended to use database name (MS:1001013) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Mascot:Protein Relevance Factorc # Classes

URI http://purl.obolibrary.org/obo/MS_1001662
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Target FDR Relaxedc # Classes

URI http://purl.obolibrary.org/obo/MS_1001663
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Target FDR Strictc # Classes

URI http://purl.obolibrary.org/obo/MS_1001664
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Mascot:Taxonomyc # Classes

URI http://purl.obolibrary.org/obo/MS_1001665
Description

This term was made obsolete because it's recommended to use taxonomy: scientific name (MS:1001469) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Use Average Precursor Massc # Classes

URI http://purl.obolibrary.org/obo/MS_1001666
Description

This term was made obsolete because it's recommended to use parent mass type average (MS:1001212) instead.
Super-classes obo:MS_1002101c

Mascot:use MudPIT scoringc # Classes

URI http://purl.obolibrary.org/obo/MS_1001667
Description

This term was made obsolete because it's recommended to use Mascot:ProteinScoringMethod (MS:1001318) instead.
Super-classes obo:MS_1002095c

ProteomeDiscoverer:Absolute XCorr Thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1001668
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:Calculate Probability Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001669
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:CTerminal Modificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001670
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:Fragment Ion Cutoff Percentagec # Classes

URI http://purl.obolibrary.org/obo/MS_1001671
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:Max Identical Modifications Per Peptidec # Classes

URI http://purl.obolibrary.org/obo/MS_1001672
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Max Modifications Per Peptidec # Classes

URI http://purl.obolibrary.org/obo/MS_1001673
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:Maximum Peptides Consideredc # Classes

URI http://purl.obolibrary.org/obo/MS_1001674
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Maximum Peptides Outputc # Classes

URI http://purl.obolibrary.org/obo/MS_1001675
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Maximum Protein References Per Peptidec # Classes

URI http://purl.obolibrary.org/obo/MS_1001676
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:NTerminal Modificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001677
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Peptide CTerminusc # Classes

URI http://purl.obolibrary.org/obo/MS_1001678
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Peptide NTerminusc # Classes

URI http://purl.obolibrary.org/obo/MS_1001679
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:Peptide Relevance Factorc # Classes

URI http://purl.obolibrary.org/obo/MS_1001680
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Protein Relevance Thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1001681
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Search Against Decoy Databasec # Classes

URI http://purl.obolibrary.org/obo/MS_1001682
Description

This term was made obsolete because it's recommended to use quality estimation with decoy database (MS:1001194) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:Use Average Fragment Massesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001683
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Use Neutral Loss a Ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001684
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Use Neutral Loss b Ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001685
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Use Neutral Loss y Ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001686
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Use Neutral Loss z Ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001687
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:Weight of a Ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001688
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:Weight of b Ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001689
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:Weight of c Ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001690
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:Weight of d Ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001691
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:Weight of v Ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001692
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:Weight of w Ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001693
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:Weight of x Ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001694
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:Weight of y Ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001695
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:Weight of z Ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001696
Super-classes obo:MS_1002101c

ProteomeDiscoverer:ZCore:Protein Score Cutoffc # Classes

URI http://purl.obolibrary.org/obo/MS_1001697
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Reporter Ions Quantizer:Integration Methodc # Classes

URI http://purl.obolibrary.org/obo/MS_1001698
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Reporter Ions Quantizer:Integration Window Tolerancec # Classes

URI http://purl.obolibrary.org/obo/MS_1001699
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Reporter Ions Quantizer:Quantitation Methodc # Classes

URI http://purl.obolibrary.org/obo/MS_1001700
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Spectrum Exporter:Export Formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001701
Description

This term was made obsolete because it's recommended to use one of the 'mass spectrometer file format' terms (MS:1000560) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Spectrum Exporter:File namec # Classes

URI http://purl.obolibrary.org/obo/MS_1001702
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Search Modifications Only For Identified Proteinsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001703
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge1c # Classes

URI http://purl.obolibrary.org/obo/MS_1001704
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge2c # Classes

URI http://purl.obolibrary.org/obo/MS_1001705
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge3c # Classes

URI http://purl.obolibrary.org/obo/MS_1001706
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge4c # Classes

URI http://purl.obolibrary.org/obo/MS_1001707
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge1c # Classes

URI http://purl.obolibrary.org/obo/MS_1001708
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge2c # Classes

URI http://purl.obolibrary.org/obo/MS_1001709
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge3c # Classes

URI http://purl.obolibrary.org/obo/MS_1001710
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge4c # Classes

URI http://purl.obolibrary.org/obo/MS_1001711
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge1c # Classes

URI http://purl.obolibrary.org/obo/MS_1001712
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge2c # Classes

URI http://purl.obolibrary.org/obo/MS_1001713
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge3c # Classes

URI http://purl.obolibrary.org/obo/MS_1001714
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge4c # Classes

URI http://purl.obolibrary.org/obo/MS_1001715
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge1c # Classes

URI http://purl.obolibrary.org/obo/MS_1001716
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge2c # Classes

URI http://purl.obolibrary.org/obo/MS_1001717
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge3c # Classes

URI http://purl.obolibrary.org/obo/MS_1001718
Super-classes obo:MS_1002101c

ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge4c # Classes

URI http://purl.obolibrary.org/obo/MS_1001719
Super-classes obo:MS_1002101c

ProteomeDiscoverer:1. Dynamic Modificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001720
Description

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:2. Dynamic Modificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001721
Description

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:3. Dynamic Modificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001722
Description

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:4. Dynamic Modificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001723
Description

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Static Modification for Xc # Classes

URI http://purl.obolibrary.org/obo/MS_1001724
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Initial minimal peptide probabilityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001725
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Minimal peptide probabilityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001726
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Minimal peptide weightc # Classes

URI http://purl.obolibrary.org/obo/MS_1001727
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Number of input1 spectrac # Classes

URI http://purl.obolibrary.org/obo/MS_1001728
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Number of input2 spectrac # Classes

URI http://purl.obolibrary.org/obo/MS_1001729
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Number of input3 spectrac # Classes

URI http://purl.obolibrary.org/obo/MS_1001730
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Number of input4 spectrac # Classes

URI http://purl.obolibrary.org/obo/MS_1001731
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Number of input5 spectrac # Classes

URI http://purl.obolibrary.org/obo/MS_1001732
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Number of predicted correct proteinsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001733
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Organismc # Classes

URI http://purl.obolibrary.org/obo/MS_1001734
Description

This term was made obsolete because it's recommended to use taxonomy: scientific name (MS:1001469) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Reference Databasec # Classes

URI http://purl.obolibrary.org/obo/MS_1001735
Description

This term was made obsolete. Use attribute in mzIdentML / mzQuantML instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Residue substitution listc # Classes

URI http://purl.obolibrary.org/obo/MS_1001736
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Source file extensionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001737
Description

This term was made obsolete because it's recommended to use mass spectrometer file format (MS:1000560) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Source Filesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001738
Description

This term was made obsolete because it's recommended to use pepXML file (MS:1001421) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Source Files oldc # Classes

URI http://purl.obolibrary.org/obo/MS_1001739
Description

This term was made obsolete because it's recommended to use pepXML file (MS:1001421) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:WinCyg reference databasec # Classes

URI http://purl.obolibrary.org/obo/MS_1001740
Super-classes obo:MS_1002101c

ProteomeDiscoverer:WinCyg source filesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001741
Super-classes obo:MS_1002101c

LTQ Orbitrap Velosc # Classes

URI http://purl.obolibrary.org/obo/MS_1001742
Super-classes obo:MS_1000494c

ProteomeDiscoverer:Mascot:Weight of A Ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001743
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Mascot:Weight of B Ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001744
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Mascot:Weight of C Ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001745
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Mascot:Weight of D Ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001746
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Mascot:Weight of V Ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001747
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Mascot:Weight of W Ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001748
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Mascot:Weight of X Ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001749
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Mascot:Weight of Y Ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001750
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Mascot:Weight of Z Ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001751
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Spectrum Selector:Use New Precursor Reevaluationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001752
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Spectrum Selector:SN Threshold FTonlyc # Classes

URI http://purl.obolibrary.org/obo/MS_1001753
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Mascot:Please Do not Touch thisc # Classes

URI http://purl.obolibrary.org/obo/MS_1001754
Super-classes obo:MS_1002101c

contact phone numberc # Classes

URI http://purl.obolibrary.org/obo/MS_1001755
Super-classes obo:MS_1000585c

contact fax numberc # Classes

URI http://purl.obolibrary.org/obo/MS_1001756
Super-classes obo:MS_1000585c

contact toll-free phone numberc # Classes

URI http://purl.obolibrary.org/obo/MS_1001757
Super-classes obo:MS_1000585c

Mascot:SigThresholdTypec # Classes

URI http://purl.obolibrary.org/obo/MS_1001758
Super-classes obo:MS_1002095c

Mascot:ProteinGroupingc # Classes

URI http://purl.obolibrary.org/obo/MS_1001759
Super-classes obo:MS_1002095c

Percolator:featuresc # Classes

URI http://purl.obolibrary.org/obo/MS_1001760
Super-classes obo:MS_1002107c

ACQUITY UPLCc # Classes

URI http://purl.obolibrary.org/obo/MS_1001761
Super-classes obo:MS_1000126c

ACQUITY UPLC H-Classc # Classes

URI http://purl.obolibrary.org/obo/MS_1001762
Super-classes obo:MS_1000126c

ACQUITY UPLC H-Class Bioc # Classes

URI http://purl.obolibrary.org/obo/MS_1001763
Super-classes obo:MS_1000126c

ACQUITY UPLC I-Classc # Classes

URI http://purl.obolibrary.org/obo/MS_1001764
Super-classes obo:MS_1000126c

ACQUITY UPLC Systems with 2D Technologyc # Classes

URI http://purl.obolibrary.org/obo/MS_1001765
Super-classes obo:MS_1000126c

nanoACQUITY UPLCc # Classes

URI http://purl.obolibrary.org/obo/MS_1001766
Super-classes obo:MS_1000126c

nanoACQUITY UPLC System with 1D Technologyc # Classes

URI http://purl.obolibrary.org/obo/MS_1001767
Super-classes obo:MS_1000126c

nanoACQUITY UPLC with HDX Technologyc # Classes

URI http://purl.obolibrary.org/obo/MS_1001768
Super-classes obo:MS_1000126c

TRIZAIC UPLC nanoTilec # Classes

URI http://purl.obolibrary.org/obo/MS_1001769
Super-classes obo:MS_1000126c

GCT Premierc # Classes

URI http://purl.obolibrary.org/obo/MS_1001770
Super-classes obo:MS_1000126c

MALDI Synapt G2 HDMSc # Classes

URI http://purl.obolibrary.org/obo/MS_1001771
Super-classes obo:MS_1000126c

MALDI Synapt G2 MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1001772
Super-classes obo:MS_1000126c

MALDI Synapt G2-S HDMSc # Classes

URI http://purl.obolibrary.org/obo/MS_1001773
Super-classes obo:MS_1000126c

MALDI Synapt G2-S MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1001774
Super-classes obo:MS_1000126c

MALDI Synapt HDMSc # Classes

URI http://purl.obolibrary.org/obo/MS_1001775
Super-classes obo:MS_1000126c

MALDI Synapt MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1001776
Super-classes obo:MS_1000126c

Synapt G2 HDMSc # Classes

URI http://purl.obolibrary.org/obo/MS_1001777
Super-classes obo:MS_1000126c

Synapt G2 MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1001778
Super-classes obo:MS_1000126c

Synapt G2-S HDMSc # Classes

URI http://purl.obolibrary.org/obo/MS_1001779
Super-classes obo:MS_1000126c

Synapt G2-S MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1001780
Super-classes obo:MS_1000126c

Synapt HDMSc # Classes

URI http://purl.obolibrary.org/obo/MS_1001781
Super-classes obo:MS_1000126c

Synapt MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1001782
Super-classes obo:MS_1000126c

Xevo G2 Q-Tofc # Classes

URI http://purl.obolibrary.org/obo/MS_1001783
Super-classes obo:MS_1000126c

Xevo G2 Tofc # Classes

URI http://purl.obolibrary.org/obo/MS_1001784
Super-classes obo:MS_1000126c

Xevo Q-Tofc # Classes

URI http://purl.obolibrary.org/obo/MS_1001785
Super-classes obo:MS_1000126c

3100c # Classes

URI http://purl.obolibrary.org/obo/MS_1001786
Super-classes obo:MS_1000126c

Acquity SQDc # Classes

URI http://purl.obolibrary.org/obo/MS_1001787
Super-classes obo:MS_1000126c

Acquity TQDc # Classes

URI http://purl.obolibrary.org/obo/MS_1001788
Super-classes obo:MS_1000126c

Quattro micro GCc # Classes

URI http://purl.obolibrary.org/obo/MS_1001789
Super-classes obo:MS_1000126c

Xevo TQ MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1001790
Super-classes obo:MS_1000126c

Xevo TQDc # Classes

URI http://purl.obolibrary.org/obo/MS_1001791
Super-classes obo:MS_1000126c

Xevo TQ-Sc # Classes

URI http://purl.obolibrary.org/obo/MS_1001792
Super-classes obo:MS_1000126c

Mascot:PreferredTaxonomyc # Classes

URI http://purl.obolibrary.org/obo/MS_1001793
Super-classes obo:MS_1002095c

Empowerc # Classes

URI http://purl.obolibrary.org/obo/MS_1001795
Super-classes obo:MS_1000694c
obo:MS_1001457c
obo:MS_1001456c

UNIFYc # Classes

URI http://purl.obolibrary.org/obo/MS_1001796
Super-classes obo:MS_1001457c
obo:MS_1001456c
obo:MS_1000694c

travelling wave ion mobility mass spectrometerc # Classes

URI http://purl.obolibrary.org/obo/MS_1001797
Description

This child of the former purgatory term ion mobility spectrometry was made obsolete.

LECO softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1001798
Super-classes obo:MS_1000531c
Sub-classes obo:MS_1001877c
obo:MS_1001799c

ChromaTOF softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1001799
Super-classes obo:MS_1001798c
obo:MS_1001455c
obo:MS_1001457c
obo:MS_1001456c

LECO instrument modelc # Classes

URI http://purl.obolibrary.org/obo/MS_1001800
Super-classes obo:MS_1000031c
Sub-classes obo:MS_1001803c
obo:MS_1002278c
obo:MS_1001801c
obo:MS_1002719c
obo:MS_1001804c
obo:MS_1001802c
obo:MS_1001945c

Pegasus HRTc # Classes

URI http://purl.obolibrary.org/obo/MS_1001801
Super-classes obo:MS_1001800c

Citius HRTc # Classes

URI http://purl.obolibrary.org/obo/MS_1001802
Super-classes obo:MS_1001800c

Pegasusc # Classes

URI http://purl.obolibrary.org/obo/MS_1001803
Super-classes obo:MS_1001800c

TruTOFc # Classes

URI http://purl.obolibrary.org/obo/MS_1001804
Super-classes obo:MS_1001800c

quantification datatypec # Classes

URI http://purl.obolibrary.org/obo/MS_1001805
Super-classes obo:MS_1001129c
Sub-classes obo:MS_1001904c
obo:MS_1002517c
obo:MS_1002547c
obo:MS_1002548c
obo:MS_1001853c
obo:MS_1001858c
obo:MS_1002413c
obo:MS_1001138c
obo:MS_1001902c
obo:MS_1002066c
obo:MS_1001857c
obo:MS_1002736c
obo:MS_1001141c
obo:MS_1002735c
obo:MS_1001847c
obo:MS_1001894c
obo:MS_1001137c
obo:MS_1001856c
obo:MS_1002513c
obo:MS_1001859c
obo:MS_1002738c
obo:MS_1001846c
obo:MS_1002739c
obo:MS_1001901c
obo:MS_1002737c
obo:MS_1002886c
obo:MS_1002072c
obo:MS_1001845c

quantification object attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1001806
Super-classes obo:MS_1001129c
Sub-classes obo:MS_1002118c
obo:MS_1001823c
obo:MS_1002115c
obo:MS_1002152c
obo:MS_1001828c
obo:MS_1002151c
obo:MS_1002116c
obo:MS_1001825c
obo:MS_1002111c
obo:MS_1001817c
obo:MS_1002127c
obo:MS_1002114c
obo:MS_1001807c
obo:MS_1002120c
obo:MS_1002110c
obo:MS_1002112c
obo:MS_1002117c
obo:MS_1002113c
obo:MS_1002119c
obo:MS_1000884c

study variable attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1001807
Super-classes obo:MS_1001806c
Sub-classes obo:MS_1001816c
obo:MS_1001812c
obo:MS_1001815c
obo:MS_1001810c
obo:MS_1001811c
obo:MS_1001808c
obo:MS_1001809c
obo:MS_1001814c
obo:MS_1001813c

technical replicatec # Classes

URI http://purl.obolibrary.org/obo/MS_1001808
Super-classes obo:MS_1001807c

biological replicatec # Classes

URI http://purl.obolibrary.org/obo/MS_1001809
Super-classes obo:MS_1001807c

experimental condition 'case'c # Classes

URI http://purl.obolibrary.org/obo/MS_1001810
Super-classes obo:MS_1001807c

experimental condition 'control'c # Classes

URI http://purl.obolibrary.org/obo/MS_1001811
Super-classes obo:MS_1001807c

experimental condition 'disease'c # Classes

URI http://purl.obolibrary.org/obo/MS_1001812
Super-classes obo:MS_1001807c

experimental condition 'healthy'c # Classes

URI http://purl.obolibrary.org/obo/MS_1001813
Super-classes obo:MS_1001807c

generic experimental conditionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001814
Super-classes obo:MS_1001807c

time series, time point Xc # Classes

URI http://purl.obolibrary.org/obo/MS_1001815
Super-classes obo:MS_1001807c

dilution series, concentration Xc # Classes

URI http://purl.obolibrary.org/obo/MS_1001816
Super-classes obo:MS_1001807c

raw file attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1001817
Super-classes obo:MS_1001806c
Sub-classes obo:MS_1001819c
obo:MS_1001822c
obo:MS_1001818c
obo:MS_1001821c
obo:MS_1001820c

one sample runc # Classes

URI http://purl.obolibrary.org/obo/MS_1001818
Super-classes obo:MS_1001817c

two sample runc # Classes

URI http://purl.obolibrary.org/obo/MS_1001819
Super-classes obo:MS_1001817c

three sample runc # Classes

URI http://purl.obolibrary.org/obo/MS_1001820
Super-classes obo:MS_1001817c

four sample runc # Classes

URI http://purl.obolibrary.org/obo/MS_1001821
Super-classes obo:MS_1001817c

eight sample runc # Classes

URI http://purl.obolibrary.org/obo/MS_1001822
Super-classes obo:MS_1001817c

raw files group attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1001823
Super-classes obo:MS_1001806c
Sub-classes obo:MS_1001824c

merge of runs of 1D gel bandsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001824
Super-classes obo:MS_1001823c

feature list attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1001825
Super-classes obo:MS_1001806c
Sub-classes obo:MS_1001826c
obo:MS_1001827c
obo:MS_1002122c

mass trace reporting: rectanglesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001826
Super-classes obo:MS_1001825c

mass trace reporting: polygonsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001827
Super-classes obo:MS_1001825c

feature attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1001828
Super-classes obo:MS_1001806c
Sub-classes obo:MS_1001829c
obo:MS_1002121c

SRM transition IDc # Classes

URI http://purl.obolibrary.org/obo/MS_1001829
Super-classes obo:MS_1001828c

Progenesis LC-MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1001830
Super-classes obo:MS_1001139c

SILACAnalyzerc # Classes

URI http://purl.obolibrary.org/obo/MS_1001831
Super-classes obo:MS_1000752c
obo:MS_1001139c

quantitation software comment or customizationsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001832
Super-classes obo:MS_1001129c
Sub-classes obo:MS_1002516c
obo:MS_1002515c

quantitation analysis summaryc # Classes

URI http://purl.obolibrary.org/obo/MS_1001833
Super-classes obo:MS_1001129c
Sub-classes obo:MS_1002009c
obo:MS_1001835c
obo:MS_1001834c
obo:MS_1002023c
obo:MS_1002514c
obo:MS_1001836c
obo:MS_1001839c
obo:MS_1002018c
obo:MS_1001838c

LC-MS label-free quantitation analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1001834
Super-classes obo:MS_1001833c
Sub-classes obo:MS_1002019c
obo:MS_1002021c
obo:MS_1002022c
obo:MS_1002020c

SILAC quantitation analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1001835
Super-classes obo:MS_1001833c

spectral counting quantitation analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1001836
Super-classes obo:MS_1001833c
Sub-classes obo:MS_1002016c
obo:MS_1002017c
obo:MS_1002015c

iTRAQ quantitation analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1001837
Super-classes obo:MS_1002009c

SRM quantitation analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1001838
Super-classes obo:MS_1001833c
Sub-classes obo:MS_1002281c
obo:MS_1002284c
obo:MS_1002283c
obo:MS_1002282c

metabolic labeling 14N / 15N quantitation analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1001839
Super-classes obo:MS_1001833c

LC-MS feature intensityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001840
Super-classes obo:MS_1002735c

LC-MS feature volumec # Classes

URI http://purl.obolibrary.org/obo/MS_1001841
Super-classes obo:MS_1002735c

sequence-level spectral countc # Classes

URI http://purl.obolibrary.org/obo/MS_1001842
Super-classes obo:MS_1002737c

MS1 feature maximum intensityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001843
Super-classes obo:MS_1002735c

MS1 feature areac # Classes

URI http://purl.obolibrary.org/obo/MS_1001844
Super-classes obo:MS_1002735c

peak areac # Classes

URI http://purl.obolibrary.org/obo/MS_1001845
Description

This term was made obsolete because it was a duplication of MS:1001844.
Super-classes obo:MS_1001805c

isotopic pattern areac # Classes

URI http://purl.obolibrary.org/obo/MS_1001846
Super-classes obo:MS_1001805c

reporter ion intensityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001847
Super-classes obo:MS_1001805c

simple ratio of two valuesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001848
Super-classes obo:MS_1002066c

sum of MatchedFeature valuesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001849
Description

This term was made obsolete because the concept MatchedFeature was dropped.
Super-classes obo:MS_1002735c

normalized peptide valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001850
Super-classes obo:MS_1002737c

protein value: sum of peptide valuesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001851
Super-classes obo:MS_1002738c

normalized protein valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001852
Super-classes obo:MS_1002738c

max fold changec # Classes

URI http://purl.obolibrary.org/obo/MS_1001853
Super-classes obo:MS_1001805c

ANOVA p-valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001854
Super-classes obo:MS_1002072c

t-test p-valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001855
Super-classes obo:MS_1002072c

reporter ion raw valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001856
Super-classes obo:MS_1001805c

reporter ion normalized valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001857
Super-classes obo:MS_1001805c

XIC areac # Classes

URI http://purl.obolibrary.org/obo/MS_1001858
Super-classes obo:MS_1001805c

normalized XIC areac # Classes

URI http://purl.obolibrary.org/obo/MS_1001859
Super-classes obo:MS_1001805c

protein value: mean of peptide ratiosc # Classes

URI http://purl.obolibrary.org/obo/MS_1001860
Super-classes obo:MS_1002738c

quantification data processingc # Classes

URI http://purl.obolibrary.org/obo/MS_1001861
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001000c
Sub-classes obo:MS_1001863c
obo:MS_1001862c
obo:MS_1001867c
obo:MS_1001864c
obo:MS_1001866c
obo:MS_1002071c
obo:MS_1001865c
obo:MS_1002211c
obo:MS_1002070c

normalization to mean of sum of all proteinsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001862
Super-classes obo:MS_1001861c

quantile normalization, proteinsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001863
Super-classes obo:MS_1001861c

quantile normalization, peptidesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001864
Super-classes obo:MS_1001861c

Progenesis automatic alignmentc # Classes

URI http://purl.obolibrary.org/obo/MS_1001865
Super-classes obo:MS_1001861c

Progenesis manual alignmentc # Classes

URI http://purl.obolibrary.org/obo/MS_1001866
Super-classes obo:MS_1001861c

Progenesis normalizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001867
Super-classes obo:MS_1001861c

distinct peptide-level q-valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001868
Super-classes obo:MS_1002484c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c

protein-level q-valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001869
Super-classes obo:MS_1001116c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c

peptide sequence-level p-valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001870
Super-classes obo:MS_1001092c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c

protein-level p-valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001871
Super-classes obo:MS_1001116c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c

peptide sequence-level e-valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001872
Super-classes obo:MS_1001092c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002306c

protein-level e-valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001873
Super-classes obo:MS_1001116c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002306c

FDRScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001874
Description

This term was made obsolete because it was split into the more specific terms for PSM-level FDRScore (1002355), distinct peptide-level FDRScore (MS:1002360), protein-level FDRScore (MS:1002365) and protein group-level FDRScore (MS:1002374).
Super-classes obo:MS_1001153c
obo:MS_1001143c

modification motifc # Classes

URI http://purl.obolibrary.org/obo/MS_1001875
Super-classes obo:MS_1001056c

modification probabilityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001876
Super-classes obo:MS_1001056c

ChromaTOF HRT softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1001877
Super-classes obo:MS_1001798c
obo:MS_1001455c
obo:MS_1001457c
obo:MS_1001456c

MALDI Solutions Microbial Identificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001878
Super-classes obo:MS_1001558c

offset voltagec # Classes

URI http://purl.obolibrary.org/obo/MS_1001879
Super-classes obo:MS_1000482c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000218c

in-source collision-induced dissociationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001880
Super-classes obo:MS_1000044c

mz5 formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1001881
Super-classes obo:MS_1000560c

transition validation attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1001882
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000908c
Sub-classes obo:MS_1001884c
obo:MS_1001883c

coefficient of variationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001883
Super-classes obo:MS_1001882c

signal-to-noise ratioc # Classes

URI http://purl.obolibrary.org/obo/MS_1001884
Super-classes obo:MS_1001882c

command-line parametersc # Classes

URI http://purl.obolibrary.org/obo/MS_1001885
Super-classes obo:MS_1000630c

SQIDc # Classes

URI http://purl.obolibrary.org/obo/MS_1001886
Super-classes obo:MS_1001457c
obo:MS_1001456c

SQID:scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001887
Super-classes obo:MS_1001143c

SQID:deltaScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001888
Super-classes obo:MS_1001143c

SQID:protein scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001889
Super-classes obo:MS_1002363c

Progenesis:protein normalised abundancec # Classes

URI http://purl.obolibrary.org/obo/MS_1001890
Super-classes obo:MS_1002738c

Progenesis:peptide normalised abundancec # Classes

URI http://purl.obolibrary.org/obo/MS_1001891
Super-classes obo:MS_1002737c

Progenesis:protein raw abundancec # Classes

URI http://purl.obolibrary.org/obo/MS_1001892
Super-classes obo:MS_1002738c

Progenesis:peptide raw abundancec # Classes

URI http://purl.obolibrary.org/obo/MS_1001893
Super-classes obo:MS_1002737c

Progenesis:confidence scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001894
Super-classes obo:MS_1001805c

Progenesis:peptide countc # Classes

URI http://purl.obolibrary.org/obo/MS_1001895
Super-classes obo:MS_1002737c

Progenesis:feature intensityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001896
Super-classes obo:MS_1002735c

MaxQuant:peptide counts (unique)c # Classes

URI http://purl.obolibrary.org/obo/MS_1001897
Super-classes obo:MS_1002737c

MaxQuant:peptide counts (all)c # Classes

URI http://purl.obolibrary.org/obo/MS_1001898
Super-classes obo:MS_1002737c

MaxQuant:peptide counts (razor+unique)c # Classes

URI http://purl.obolibrary.org/obo/MS_1001899
Super-classes obo:MS_1002737c

MaxQuant:sequence lengthc # Classes

URI http://purl.obolibrary.org/obo/MS_1001900
Super-classes obo:MS_1002737c

MaxQuant:PEPc # Classes

URI http://purl.obolibrary.org/obo/MS_1001901
Super-classes obo:MS_1001805c

MaxQuant:LFQ intensityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001902
Super-classes obo:MS_1001805c

MaxQuant:feature intensityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001903
Super-classes obo:MS_1002735c

MaxQuant:MS/MS countc # Classes

URI http://purl.obolibrary.org/obo/MS_1001904
Super-classes obo:MS_1001805c

emPAI valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001905
Super-classes obo:MS_1002738c

APEX valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1001906
Super-classes obo:MS_1002738c

retention time window widthc # Classes

URI http://purl.obolibrary.org/obo/MS_1001907
Super-classes obo:MS_1000915c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000010c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000031c

ISQc # Classes

URI http://purl.obolibrary.org/obo/MS_1001908
Super-classes obo:MS_1000494c

Velos Plusc # Classes

URI http://purl.obolibrary.org/obo/MS_1001909
Super-classes obo:MS_1000494c

LTQ Orbitrap Elitec # Classes

URI http://purl.obolibrary.org/obo/MS_1001910
Super-classes obo:MS_1000494c

Q Exactivec # Classes

URI http://purl.obolibrary.org/obo/MS_1001911
Super-classes obo:MS_1000494c

PinPointc # Classes

URI http://purl.obolibrary.org/obo/MS_1001912
Super-classes obo:MS_1001457c
obo:MS_1001456c
obo:MS_1000693c

S-lens voltagec # Classes

URI http://purl.obolibrary.org/obo/MS_1001913
Super-classes obo:MS_1000482c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000218c

pymzMLc # Classes

URI http://purl.obolibrary.org/obo/MS_1001914
Super-classes obo:MS_1001457c

leukocyte elastasec # Classes

URI http://purl.obolibrary.org/obo/MS_1001915
Super-classes obo:MS_1001045c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1001957c

proline endopeptidasec # Classes

URI http://purl.obolibrary.org/obo/MS_1001916
Super-classes obo:MS_1001045c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1001958c

glutamyl endopeptidasec # Classes

URI http://purl.obolibrary.org/obo/MS_1001917
Super-classes obo:MS_1001045c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1001959c

2-iodobenzoatec # Classes

URI http://purl.obolibrary.org/obo/MS_1001918
Super-classes obo:MS_1001045c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1001960c

ProteomeXchange accession numberc # Classes

URI http://purl.obolibrary.org/obo/MS_1001919
Super-classes obo:MS_1000878c

ProteomeXchange accession number version numberc # Classes

URI http://purl.obolibrary.org/obo/MS_1001921
Super-classes obo:MS_1000878c

Digital Object Identifier (DOI)c # Classes

URI http://purl.obolibrary.org/obo/MS_1001922
Super-classes obo:MS_1000878c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002480c

external reference keywordc # Classes

URI http://purl.obolibrary.org/obo/MS_1001923
Super-classes obo:MS_1002840c
Sub-classes obo:MS_1001925c
obo:MS_1001926c
obo:MS_1001924c

journal article keywordc # Classes

URI http://purl.obolibrary.org/obo/MS_1001924
Super-classes obo:MS_1001923c

submitter keywordc # Classes

URI http://purl.obolibrary.org/obo/MS_1001925
Super-classes obo:MS_1001923c

curator keywordc # Classes

URI http://purl.obolibrary.org/obo/MS_1001926
Super-classes obo:MS_1001923c

Tranche file hashc # Classes

URI http://purl.obolibrary.org/obo/MS_1001927
Super-classes obo:MS_1000878c

Tranche project hashc # Classes

URI http://purl.obolibrary.org/obo/MS_1001928
Super-classes obo:MS_1000878c

PRIDE experiment URIc # Classes

URI http://purl.obolibrary.org/obo/MS_1001929
Super-classes obo:MS_1000878c

PRIDE project URIc # Classes

URI http://purl.obolibrary.org/obo/MS_1001930
Super-classes obo:MS_1000878c

source interfacec # Classes

URI http://purl.obolibrary.org/obo/MS_1001931
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000458c

source interface modelc # Classes

URI http://purl.obolibrary.org/obo/MS_1001932
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001931c

source sprayerc # Classes

URI http://purl.obolibrary.org/obo/MS_1001933
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000458c

source sprayer typec # Classes

URI http://purl.obolibrary.org/obo/MS_1001934
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001933c

source sprayer manufacturerc # Classes

URI http://purl.obolibrary.org/obo/MS_1001935
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001933c

source sprayer modelc # Classes

URI http://purl.obolibrary.org/obo/MS_1001936
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001933c

sample platec # Classes

URI http://purl.obolibrary.org/obo/MS_1001937
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000458c

sample plate typec # Classes

URI http://purl.obolibrary.org/obo/MS_1001938
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001937c
Sub-classes obo:MS_1001939c
obo:MS_1001940c
obo:MS_1000839c

stainless steel platec # Classes

URI http://purl.obolibrary.org/obo/MS_1001939
Super-classes obo:MS_1001938c

coated glass platec # Classes

URI http://purl.obolibrary.org/obo/MS_1001940
Super-classes obo:MS_1001938c

electrospray supply typec # Classes

URI http://purl.obolibrary.org/obo/MS_1001941
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000458c
Sub-classes obo:MS_1001942c
obo:MS_1001943c

static supply electrosprayc # Classes

URI http://purl.obolibrary.org/obo/MS_1001942
Super-classes obo:MS_1001941c

fed supply electrosprayc # Classes

URI http://purl.obolibrary.org/obo/MS_1001943
Super-classes obo:MS_1001941c

Collision cell exit potentialc # Classes

URI http://purl.obolibrary.org/obo/MS_1001944
Super-classes obo:MS_1000510c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000218c

Pegasus 4Dc # Classes

URI http://purl.obolibrary.org/obo/MS_1001945
Super-classes obo:MS_1001800c

PEAKS Studioc # Classes

URI http://purl.obolibrary.org/obo/MS_1001946
Super-classes obo:MS_1001456c
obo:MS_1001139c
obo:MS_1001457c

PEAKS Onlinec # Classes

URI http://purl.obolibrary.org/obo/MS_1001947
Super-classes obo:MS_1001139c
obo:MS_1001457c
obo:MS_1001456c

PEAKS Nodec # Classes

URI http://purl.obolibrary.org/obo/MS_1001948
Super-classes obo:MS_1001139c
obo:MS_1001457c
obo:MS_1001456c

BSI softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1001949
Super-classes obo:MS_1000531c

PEAKS:peptideScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001950
Super-classes obo:MS_1001143c

PEAKS:proteinScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001951
Super-classes obo:MS_1002363c

ZCore:probScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001952
Super-classes obo:MS_1001143c

source interface manufacturerc # Classes

URI http://purl.obolibrary.org/obo/MS_1001953
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001931c

acquisition parameterc # Classes

URI http://purl.obolibrary.org/obo/MS_1001954
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001458c

no cleavagec # Classes

URI http://purl.obolibrary.org/obo/MS_1001955
Super-classes obo:MS_1001045c

unspecific cleavagec # Classes

URI http://purl.obolibrary.org/obo/MS_1001956
Super-classes obo:MS_1001045c

(?<=[ALIV])(?c # Classes

URI http://purl.obolibrary.org/obo/MS_1001957
Super-classes obo:MS_1001180c

(?<=[HKR]P)(?c # Classes

URI http://purl.obolibrary.org/obo/MS_1001958
Super-classes obo:MS_1001180c

(?<=[^E]E)c # Classes

URI http://purl.obolibrary.org/obo/MS_1001959
Super-classes obo:MS_1001180c

(?<=W)c # Classes

URI http://purl.obolibrary.org/obo/MS_1001960
Super-classes obo:MS_1001180c

peptide spectrum match scoring algorithmc # Classes

URI http://purl.obolibrary.org/obo/MS_1001961
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001458c

Mascot:C13 countsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001962
Super-classes obo:MS_1002095c

ProteinExtractor:Weightingc # Classes

URI http://purl.obolibrary.org/obo/MS_1001963
Super-classes obo:MS_1002098c

ProteinScape:second round Mascotc # Classes

URI http://purl.obolibrary.org/obo/MS_1001964
Super-classes obo:MS_1002100c

ProteinScape:second round Phenyxc # Classes

URI http://purl.obolibrary.org/obo/MS_1001965
Super-classes obo:MS_1002100c

product ion mobilityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001966
Super-classes obo:MS_1001221c

product ion drift timec # Classes

URI http://purl.obolibrary.org/obo/MS_1001967
Description

This term was made obsolete because it was replaced by ion mobility drift time (MS:1002476).
Super-classes obo:MS_1002222c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000028c

PTM localization PSM-level statisticc # Classes

URI http://purl.obolibrary.org/obo/MS_1001968
Super-classes obo:MS_1002689c
Sub-classes obo:MS_1001974c
obo:MS_1002537c
obo:MS_1001982c
obo:MS_1001978c
obo:MS_1001985c
obo:MS_1001986c
obo:MS_1001971c
obo:MS_1001969c
obo:MS_1001980c
obo:MS_1001970c
obo:MS_1001981c
obo:MS_1002012c
obo:MS_1001979c
obo:MS_1002536c
obo:MS_1002932c
obo:MS_1001983c

phosphoRS scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001969
Super-classes obo:MS_1001968c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002505c

phosphoRS sequence probabilityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001970
Super-classes obo:MS_1001968c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002505c

phosphoRS site probabilityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001971
Super-classes obo:MS_1001968c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002505c

PTM scoring algorithm versionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001972
Super-classes obo:MS_1001471c

DeBunkerc # Classes

URI http://purl.obolibrary.org/obo/MS_1001973
Super-classes obo:MS_1001456c

DeBunker:scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001974
Super-classes obo:MS_1001968c
obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002505c

delta m/zc # Classes

URI http://purl.obolibrary.org/obo/MS_1001975
Super-classes obo:MS_1001405c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000187c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000166c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000221c

delta Mc # Classes

URI http://purl.obolibrary.org/obo/MS_1001976
Super-classes obo:MS_1001405c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000221c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000187c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000166c

MSQuantc # Classes

URI http://purl.obolibrary.org/obo/MS_1001977
Super-classes obo:MS_1001456c

MSQuant:PTM-scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001978
Super-classes obo:MS_1001968c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002505c

MaxQuant:PTM Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001979
Super-classes obo:MS_1001968c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002505c

MaxQuant:Phospho (STY) Probabilitiesc # Classes

URI http://purl.obolibrary.org/obo/MS_1001980
Super-classes obo:MS_1001968c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002505c

MaxQuant:Phospho (STY) Score Diffsc # Classes

URI http://purl.obolibrary.org/obo/MS_1001981
Super-classes obo:MS_1001968c

MaxQuant:P-site localization probabilityc # Classes

URI http://purl.obolibrary.org/obo/MS_1001982
Super-classes obo:MS_1001968c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002505c

MaxQuant:PTM Delta Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001983
Super-classes obo:MS_1001968c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002505c

Ascore softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1001984
Super-classes obo:MS_1001456c

Ascorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001985
Super-classes obo:MS_1001968c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002505c

H-Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1001986
Super-classes obo:MS_1001968c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002505c

vacuum drying MALDI sample preparationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001987
Super-classes obo:MS_1000833c

crushed crystal MALDI sample preparationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001988
Super-classes obo:MS_1000833c

fast evaporation MALDI sample preparationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001989
Super-classes obo:MS_1000833c

overlayer MALDI sample preparationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001990
Super-classes obo:MS_1000833c

sandwich MALDI sample preparationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001991
Super-classes obo:MS_1000833c

spin coating MALDI sample preparationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001992
Super-classes obo:MS_1000833c

quick and dirty MALDI sample preparationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001993
Super-classes obo:MS_1000833c

top hat baseline reductionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001994
Super-classes obo:MS_1000593c

convex hull baseline reductionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001995
Super-classes obo:MS_1000593c

median baseline reductionc # Classes

URI http://purl.obolibrary.org/obo/MS_1001996
Super-classes obo:MS_1000593c

wavelet transformation smoothingc # Classes

URI http://purl.obolibrary.org/obo/MS_1001997
Super-classes obo:MS_1000592c

sophisticated numerical annotation procedurec # Classes

URI http://purl.obolibrary.org/obo/MS_1001998
Super-classes obo:MS_1000801c

area normalizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1001999
Super-classes obo:MS_1001484c

LIFTc # Classes

URI http://purl.obolibrary.org/obo/MS_1002000
Super-classes obo:MS_1000044c

MS1 label-based raw feature quantitationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002001
Super-classes obo:MS_1002018c

MS1 label-based peptide level quantitationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002002
Super-classes obo:MS_1002018c

MS1 label-based protein level quantitationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002003
Super-classes obo:MS_1002018c

MS1 label-based proteingroup level quantitationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002004
Super-classes obo:MS_1002018c

iRT retention time normalization standardc # Classes

URI http://purl.obolibrary.org/obo/MS_1002005
Super-classes obo:MS_1000901c

SRM transition typec # Classes

URI http://purl.obolibrary.org/obo/MS_1002006
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000908c
Sub-classes obo:MS_1002007c
obo:MS_1002008c

target SRM transitionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002007
Super-classes obo:MS_1002006c

decoy SRM transitionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002008
Super-classes obo:MS_1002006c

isobaric label quantitation analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1002009
Super-classes obo:MS_1001833c
Sub-classes obo:MS_1001837c
obo:MS_1002756c
obo:MS_1002010c
obo:MS_1002762c
obo:MS_1002761c
obo:MS_1002759c
obo:MS_1002757c
obo:MS_1002212c
obo:MS_1002760c
obo:MS_1002758c

TMT quantitation analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1002010
Super-classes obo:MS_1002009c

desorption electrospray ionizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002011
Super-classes obo:MS_1000240c

Mascot:PTM site assignment confidencec # Classes

URI http://purl.obolibrary.org/obo/MS_1002012
Super-classes obo:MS_1001968c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000187c

collision energy ramp startc # Classes

URI http://purl.obolibrary.org/obo/MS_1002013
Super-classes obo:MS_1000045c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000266c

collision energy ramp endc # Classes

URI http://purl.obolibrary.org/obo/MS_1002014
Super-classes obo:MS_1000045c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000266c

spectral count peptide level quantitationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002015
Super-classes obo:MS_1001836c

spectral count protein level quantitationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002016
Super-classes obo:MS_1001836c

spectral count proteingroup level quantitationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002017
Super-classes obo:MS_1001836c

MS1 label-based analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1002018
Super-classes obo:MS_1001833c
Sub-classes obo:MS_1002002c
obo:MS_1002001c
obo:MS_1002004c
obo:MS_1002003c

label-free raw feature quantitationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002019
Super-classes obo:MS_1001834c

label-free peptide level quantitationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002020
Super-classes obo:MS_1001834c

label-free protein level quantitationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002021
Super-classes obo:MS_1001834c

label-free proteingroup level quantitationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002022
Super-classes obo:MS_1001834c

MS2 tag-based analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1002023
Super-classes obo:MS_1001833c
Sub-classes obo:MS_1002024c
obo:MS_1002027c
obo:MS_1002025c
obo:MS_1002026c

MS2 tag-based feature level quantitationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002024
Super-classes obo:MS_1002023c

MS2 tag-based peptide level quantitationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002025
Super-classes obo:MS_1002023c

MS2 tag-based protein level quantitationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002026
Super-classes obo:MS_1002023c

MS2 tag-based proteingroup level quantitationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002027
Super-classes obo:MS_1002023c

nucleic acid base modificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002028
Super-classes obo:MS_1001471c

original nucleic acid sequencec # Classes

URI http://purl.obolibrary.org/obo/MS_1002029
Super-classes obo:MS_1001471c

modified nucleic acid sequencec # Classes

URI http://purl.obolibrary.org/obo/MS_1002030
Super-classes obo:MS_1001471c

PASSEL transition group browser URIc # Classes

URI http://purl.obolibrary.org/obo/MS_1002031
Super-classes obo:MS_1000878c

PeptideAtlas dataset URIc # Classes

URI http://purl.obolibrary.org/obo/MS_1002032
Super-classes obo:MS_1000878c

contact rolec # Classes

URI http://purl.obolibrary.org/obo/MS_1002033
Super-classes obo:MS_1000585c
Sub-classes obo:MS_1002332c
obo:MS_1002037c
obo:MS_1002035c
obo:MS_1002036c
obo:MS_1002034c

first authorc # Classes

URI http://purl.obolibrary.org/obo/MS_1002034
Super-classes obo:MS_1002033c

senior authorc # Classes

URI http://purl.obolibrary.org/obo/MS_1002035
Super-classes obo:MS_1002033c

co-authorc # Classes

URI http://purl.obolibrary.org/obo/MS_1002036
Super-classes obo:MS_1002033c

dataset submitterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002037
Super-classes obo:MS_1002033c

label free samplec # Classes

URI http://purl.obolibrary.org/obo/MS_1002038
Super-classes obo:MS_1000548c

inlet attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002039
Super-classes obo:MS_1000547c
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000458c
Sub-classes obo:MS_1002040c

inlet temperaturec # Classes

URI http://purl.obolibrary.org/obo/MS_1002040
Super-classes obo:MS_1000482c
obo:MS_1002039c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000027c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000012c

source temperaturec # Classes

URI http://purl.obolibrary.org/obo/MS_1002041
Super-classes obo:MS_1000482c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000012c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000027c

modulation timec # Classes

URI http://purl.obolibrary.org/obo/MS_1002042
Super-classes obo:MS_1000857c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000010c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000031c

ProteinProspectorc # Classes

URI http://purl.obolibrary.org/obo/MS_1002043
Super-classes obo:MS_1001456c

ProteinProspector:scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002044
Super-classes obo:MS_1001143c

ProteinProspector:expectation valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002045
Super-classes obo:MS_1001143c

native source pathc # Classes

URI http://purl.obolibrary.org/obo/MS_1002046
Super-classes obo:MS_1001458c

MS-GFc # Classes

URI http://purl.obolibrary.org/obo/MS_1002047
Super-classes obo:MS_1001456c

MS-GF+c # Classes

URI http://purl.obolibrary.org/obo/MS_1002048
Super-classes obo:MS_1001456c

MS-GF:RawScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002049
Super-classes obo:MS_1001143c

MS-GF:DeNovoScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002050
Super-classes obo:MS_1002363c

MS-GF:Energyc # Classes

URI http://purl.obolibrary.org/obo/MS_1002051
Super-classes obo:MS_1001143c

MS-GF:SpecEValuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002052
Super-classes obo:MS_1001143c
obo:MS_1002353c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002109c

MS-GF:EValuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002053
Super-classes obo:MS_1001143c
obo:MS_1002353c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002109c

MS-GF:QValuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002054
Super-classes obo:MS_1002354c
obo:MS_1001143c

MS-GF:PepQValuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002055
Super-classes obo:MS_1001143c

MS-GF:PEPc # Classes

URI http://purl.obolibrary.org/obo/MS_1002056
Super-classes obo:MS_1001143c

modification specificity protein N-termc # Classes

URI http://purl.obolibrary.org/obo/MS_1002057
Super-classes obo:MS_1001056c

modification specificity protein C-termc # Classes

URI http://purl.obolibrary.org/obo/MS_1002058
Super-classes obo:MS_1001056c

Microsoft Excelc # Classes

URI http://purl.obolibrary.org/obo/MS_1002059
Super-classes obo:MS_1001139c

database UniProtKB/TrEMBLc # Classes

URI http://purl.obolibrary.org/obo/MS_1002060
Super-classes obo:MS_1002126c

decoy DB from UniProtKB/TrEMBLc # Classes

URI http://purl.obolibrary.org/obo/MS_1002061
Description

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

metabolic labelling: natural N (mainly 14N)c # Classes

URI http://purl.obolibrary.org/obo/MS_1002062
Super-classes obo:MS_1001055c

FindPairsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002063
Super-classes obo:MS_1001139c

peptide consensus RTc # Classes

URI http://purl.obolibrary.org/obo/MS_1002064
Super-classes obo:MS_1002737c

peptide consensus m/zc # Classes

URI http://purl.obolibrary.org/obo/MS_1002065
Super-classes obo:MS_1002737c

ratio calculation methodc # Classes

URI http://purl.obolibrary.org/obo/MS_1002066
Super-classes obo:MS_1001805c
Sub-classes obo:MS_1001848c

protein value: median of peptide ratiosc # Classes

URI http://purl.obolibrary.org/obo/MS_1002067
Super-classes obo:MS_1002738c

metabolic labelling: heavy N (mainly 15N)c # Classes

URI http://purl.obolibrary.org/obo/MS_1002068
Super-classes obo:MS_1001055c

metabolic labelling purityc # Classes

URI http://purl.obolibrary.org/obo/MS_1002069
Super-classes obo:MS_1001055c

t-testc # Classes

URI http://purl.obolibrary.org/obo/MS_1002070
Super-classes obo:MS_1001861c

ANOVA-testc # Classes

URI http://purl.obolibrary.org/obo/MS_1002071
Super-classes obo:MS_1001861c

p-valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002072
Super-classes obo:MS_1001805c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c
Sub-classes obo:MS_1001855c
obo:MS_1001854c

mzIdentML formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002073
Super-classes obo:MS_1001040c

quantification file formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002074
Super-classes obo:MS_1001459c
Sub-classes obo:MS_1002075c

mzQuantML formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002075
Super-classes obo:MS_1002074c

PAnalyzerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002076
Super-classes obo:MS_1001456c

impactc # Classes

URI http://purl.obolibrary.org/obo/MS_1002077
Super-classes obo:MS_1001536c

ProteomeDiscoverer:1. Static Modificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002078
Description

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Static Modification (MS:1001645) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:2. Static Modificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002079
Description

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Static Modification (MS:1001645) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range Beforec # Classes

URI http://purl.obolibrary.org/obo/MS_1002080
Super-classes obo:MS_1002101c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000221c

ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range Afterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002081
Super-classes obo:MS_1002101c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000221c

first column elution timec # Classes

URI http://purl.obolibrary.org/obo/MS_1002082
Super-classes obo:MS_1000503c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000010c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000031c

second column elution timec # Classes

URI http://purl.obolibrary.org/obo/MS_1002083
Super-classes obo:MS_1000503c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000010c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000031c

multidimensional chromatography modulation descriptionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002084
Super-classes obo:MS_1000857c
Sub-classes obo:MS_1002086c
obo:MS_1002085c
obo:MS_1002087c
obo:MS_1002088c

two-dimensional gas chromatography with fixed modulation timec # Classes

URI http://purl.obolibrary.org/obo/MS_1002085
Super-classes obo:MS_1002084c

two-dimensional gas chromatography with discrete modulation time stepsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002086
Super-classes obo:MS_1002084c

two-dimensional liquid chromatography with fixed modulation timec # Classes

URI http://purl.obolibrary.org/obo/MS_1002087
Super-classes obo:MS_1002084c

two-dimensional liquid chromatography with discrete modulation time stepsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002088
Super-classes obo:MS_1002084c

ProteomeDiscoverer:Peptide Without Protein XCorr Thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002089
Super-classes obo:MS_1002101c

Calculate Probability Scoresc # Classes

URI http://purl.obolibrary.org/obo/MS_1002090
Super-classes obo:MS_1002094c

ProteomeDiscoverer:Maximum Delta Cnc # Classes

URI http://purl.obolibrary.org/obo/MS_1002091
Super-classes obo:MS_1002101c

Percolator:Validation based onc # Classes

URI http://purl.obolibrary.org/obo/MS_1002092
Super-classes obo:MS_1002107c

search engine input parameterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002093
Super-classes obo:MS_1001249c
Sub-classes obo:MS_1002094c
obo:MS_1001302c

common search engine input parameterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002094
Super-classes obo:MS_1002093c
Sub-classes obo:MS_1002090c
obo:MS_1001578c
obo:MS_1002453c
obo:MS_1002454c

Mascot input parameterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002095
Super-classes obo:MS_1001302c
Sub-classes obo:MS_1001317c
obo:MS_1001322c
obo:MS_1001793c
obo:MS_1001325c
obo:MS_1001758c
obo:MS_1001318c
obo:MS_1001321c
obo:MS_1001324c
obo:MS_1001319c
obo:MS_1001316c
obo:MS_1001323c
obo:MS_1001656c
obo:MS_1001667c
obo:MS_1001759c
obo:MS_1002749c
obo:MS_1003030c
obo:MS_1001320c
obo:MS_1001962c

SEQUEST input parameterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002096
Super-classes obo:MS_1001302c
Sub-classes obo:MS_1001026c
obo:MS_1001128c
obo:MS_1001028c
obo:MS_1001037c
obo:MS_1001032c
obo:MS_1001007c
obo:MS_1001005c
obo:MS_1001009c
obo:MS_1001006c
obo:MS_1001087c
obo:MS_1001042c
obo:MS_1001110c

Phenyx input parameterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002097
Super-classes obo:MS_1001302c
Sub-classes obo:MS_1001376c
obo:MS_1001386c
obo:MS_1001384c
obo:MS_1001383c
obo:MS_1001380c
obo:MS_1001385c
obo:MS_1001375c
obo:MS_1001377c
obo:MS_1001387c
obo:MS_1001381c
obo:MS_1001378c
obo:MS_1001382c
obo:MS_1001379c

ProteinExtractor input parameterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002098
Super-classes obo:MS_1001302c
Sub-classes obo:MS_1001433c
obo:MS_1001442c
obo:MS_1001440c
obo:MS_1001445c
obo:MS_1001443c
obo:MS_1001434c
obo:MS_1001437c
obo:MS_1001963c
obo:MS_1001424c
obo:MS_1001435c
obo:MS_1001431c
obo:MS_1001444c
obo:MS_1001425c
obo:MS_1001441c
obo:MS_1001439c
obo:MS_1001430c
obo:MS_1001426c
obo:MS_1001427c
obo:MS_1001438c
obo:MS_1001446c
obo:MS_1001432c
obo:MS_1001428c
obo:MS_1001429c
obo:MS_1001436c

OMSSA input parameterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002099
Super-classes obo:MS_1001302c
Sub-classes obo:MS_1001449c

ProteinScape input parameterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002100
Super-classes obo:MS_1001302c
Sub-classes obo:MS_1001965c
obo:MS_1001964c

ProteomeDiscoverer input parameterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002101
Super-classes obo:MS_1001302c
Sub-classes obo:MS_1001668c
obo:MS_1001717c
obo:MS_1001652c
obo:MS_1002233c
obo:MS_1001616c
obo:MS_1001630c
obo:MS_1002331c
obo:MS_1001715c
obo:MS_1001670c
obo:MS_1001705c
obo:MS_1001641c
obo:MS_1001727c
obo:MS_1001622c
obo:MS_1001723c
obo:MS_1001706c
obo:MS_1001722c
obo:MS_1001607c
obo:MS_1001613c
obo:MS_1002230c
obo:MS_1001619c
obo:MS_1002379c
obo:MS_1001658c
obo:MS_1001608c
obo:MS_1001734c
obo:MS_1002326c
obo:MS_1001747c
obo:MS_1001753c
obo:MS_1001674c
obo:MS_1001601c
obo:MS_1001713c
obo:MS_1001720c
obo:MS_1001635c
obo:MS_1001626c
obo:MS_1001714c
obo:MS_1001644c
obo:MS_1001671c
obo:MS_1001665c
obo:MS_1001645c
obo:MS_1001669c
obo:MS_1001655c
obo:MS_1001725c
obo:MS_1001624c
obo:MS_1001743c
obo:MS_1001718c
obo:MS_1001677c
obo:MS_1001620c
obo:MS_1001660c
obo:MS_1001649c
obo:MS_1001609c
obo:MS_1001657c
obo:MS_1001710c
obo:MS_1001746c
obo:MS_1001663c
obo:MS_1001754c
obo:MS_1001680c
obo:MS_1001640c
obo:MS_1002229c
obo:MS_1002329c
obo:MS_1001708c
obo:MS_1001614c
obo:MS_1001679c
obo:MS_1001737c
obo:MS_1001672c
obo:MS_1001741c
obo:MS_1001629c
obo:MS_1001729c
obo:MS_1001702c
obo:MS_1001661c
obo:MS_1001689c
obo:MS_1001623c
obo:MS_1002324c
obo:MS_1001745c
obo:MS_1001690c
obo:MS_1001612c
obo:MS_1001650c
obo:MS_1002081c
obo:MS_1001687c
obo:MS_1002569c
obo:MS_1001610c
obo:MS_1001748c
obo:MS_1001621c
obo:MS_1002330c
obo:MS_1001618c
obo:MS_1001636c
obo:MS_1001709c
obo:MS_1001615c
obo:MS_1001604c
obo:MS_1002522c
obo:MS_1001676c
obo:MS_1002080c
obo:MS_1001632c
obo:MS_1002079c
obo:MS_1001643c
obo:MS_1001701c
obo:MS_1001678c
obo:MS_1002377c
obo:MS_1002320c
obo:MS_1001726c
obo:MS_1001685c
obo:MS_1001637c
obo:MS_1001736c
obo:MS_1001728c
obo:MS_1002089c
obo:MS_1001716c
obo:MS_1001694c
obo:MS_1001732c
obo:MS_1001712c
obo:MS_1001651c
obo:MS_1001633c
obo:MS_1002318c
obo:MS_1001739c
obo:MS_1001696c
obo:MS_1001606c
obo:MS_1001631c
obo:MS_1002327c
obo:MS_1001730c
obo:MS_1001703c
obo:MS_1001738c
obo:MS_1001698c
obo:MS_1001749c
obo:MS_1001684c
obo:MS_1001664c
obo:MS_1001659c
obo:MS_1001711c
obo:MS_1002378c
obo:MS_1001662c
obo:MS_1001675c
obo:MS_1001686c
obo:MS_1001721c
obo:MS_1001628c
obo:MS_1002078c
obo:MS_1001704c
obo:MS_1001744c
obo:MS_1001611c
obo:MS_1001695c
obo:MS_1001647c
obo:MS_1001603c
obo:MS_1001638c
obo:MS_1001740c
obo:MS_1001707c
obo:MS_1001654c
obo:MS_1002317c
obo:MS_1001731c
obo:MS_1002232c
obo:MS_1002328c
obo:MS_1001699c
obo:MS_1001617c
obo:MS_1001646c
obo:MS_1001634c
obo:MS_1001653c
obo:MS_1001735c
obo:MS_1001724c
obo:MS_1001625c
obo:MS_1001688c
obo:MS_1001693c
obo:MS_1001692c
obo:MS_1001697c
obo:MS_1001750c
obo:MS_1002325c
obo:MS_1001627c
obo:MS_1002316c
obo:MS_1001751c
obo:MS_1001691c
obo:MS_1001733c
obo:MS_1001682c
obo:MS_1001681c
obo:MS_1001605c
obo:MS_1002091c
obo:MS_1002321c
obo:MS_1001639c
obo:MS_1001648c
obo:MS_1001602c
obo:MS_1002323c
obo:MS_1001683c
obo:MS_1001752c
obo:MS_1001642c
obo:MS_1001700c
obo:MS_1001719c
obo:MS_1001673c
obo:MS_1001666c
obo:MS_1002322c

software input parameterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002103
Super-classes obo:MS_1001249c
Sub-classes obo:MS_1002104c
obo:MS_1002105c

common software input parameterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002104
Super-classes obo:MS_1002103c

software specific input parameterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002105
Super-classes obo:MS_1002103c
Sub-classes obo:MS_1002389c
obo:MS_1002106c
obo:MS_1002107c

Scaffold input parameterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002106
Super-classes obo:MS_1002105c
Sub-classes obo:MS_1001575c
obo:MS_1001576c
obo:MS_1001577c

Percolator input parameterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002107
Super-classes obo:MS_1002105c
Sub-classes obo:MS_1001760c
obo:MS_1002092c

higher score betterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002108
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001153c

lower score betterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002109
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001153c

assay attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002110
Super-classes obo:MS_1001806c

assay label attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002111
Super-classes obo:MS_1001806c
Sub-classes obo:MS_1002602c

protein group list attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002112
Super-classes obo:MS_1001806c

protein group attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002113
Super-classes obo:MS_1001806c

protein list attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002114
Super-classes obo:MS_1001806c

peptide consensus list attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002115
Super-classes obo:MS_1001806c

peptide consensus attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002116
Super-classes obo:MS_1001806c

small molecule list attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002117
Super-classes obo:MS_1001806c

small molecule attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002118
Super-classes obo:MS_1001806c

small molecule modification attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002119
Super-classes obo:MS_1001806c

experiment namec # Classes

URI http://purl.obolibrary.org/obo/MS_1002120
Super-classes obo:MS_1001806c

spectral count featurec # Classes

URI http://purl.obolibrary.org/obo/MS_1002121
Super-classes obo:MS_1001828c

counts reportingc # Classes

URI http://purl.obolibrary.org/obo/MS_1002122
Super-classes obo:MS_1001825c

x-Trackerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002123
Super-classes obo:MS_1001139c

ProteoSuitec # Classes

URI http://purl.obolibrary.org/obo/MS_1002124
Super-classes obo:MS_1001139c

combined FDRScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002125
Description

This term was made obsolete because it was split into the more specific terms for PSM-level combined FDRScore (MS:1002356), distinct peptide-level combined FDRScore (MS:1002361), protein-level combined FDRScore (MS:1002366) and protein group-level combined FDRScore (MS:1002375).
Super-classes obo:MS_1001153c
obo:MS_1001143c

database UniProtKBc # Classes

URI http://purl.obolibrary.org/obo/MS_1002126
Super-classes obo:MS_1001013c
Sub-classes obo:MS_1001104c
obo:MS_1002060c

identification file attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002127
Super-classes obo:MS_1001806c

method file formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002128
Super-classes obo:MS_1001459c
Sub-classes obo:MS_1002411c

ITRAQAnalyzerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002129
Super-classes obo:MS_1001139c
obo:MS_1000752c

identification file formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002130
Super-classes obo:MS_1001459c
Sub-classes obo:MS_1002600c

TOPP noise filterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002131
Super-classes obo:MS_1000752c
Sub-classes obo:MS_1002132c
obo:MS_1002133c

TOPP NoiseFilterGaussianc # Classes

URI http://purl.obolibrary.org/obo/MS_1002132
Super-classes obo:MS_1002131c

TOPP NoiseFilterSGolayc # Classes

URI http://purl.obolibrary.org/obo/MS_1002133
Super-classes obo:MS_1002131c

TOPP peak pickerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002134
Super-classes obo:MS_1000752c
Sub-classes obo:MS_1002135c
obo:MS_1002136c

TOPP PeakPickerHiResc # Classes

URI http://purl.obolibrary.org/obo/MS_1002135
Super-classes obo:MS_1002134c

TOPP PeakPickerWaveletc # Classes

URI http://purl.obolibrary.org/obo/MS_1002136
Super-classes obo:MS_1002134c

TOPP spectra filterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002137
Super-classes obo:MS_1000752c
Sub-classes obo:MS_1002144c
obo:MS_1002141c
obo:MS_1002138c
obo:MS_1002146c
obo:MS_1002143c
obo:MS_1002142c
obo:MS_1002140c
obo:MS_1002145c
obo:MS_1002139c

TOPP SpectraFilterBernNormc # Classes

URI http://purl.obolibrary.org/obo/MS_1002138
Super-classes obo:MS_1002137c

TOPP SpectraFilterMarkerMowerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002139
Super-classes obo:MS_1002137c

TOPP SpectraFilterNLargestc # Classes

URI http://purl.obolibrary.org/obo/MS_1002140
Super-classes obo:MS_1002137c

TOPP SpectraFilterNormalizerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002141
Super-classes obo:MS_1002137c

TOPP SpectraFilterParentPeakMowerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002142
Super-classes obo:MS_1002137c

TOPP SpectraFilterScalerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002143
Super-classes obo:MS_1002137c

TOPP SpectraFilterSqrtMowerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002144
Super-classes obo:MS_1002137c

TOPP SpectraFilterThresholdMowerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002145
Super-classes obo:MS_1002137c

TOPP SpectraFilterWindowMowerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002146
Super-classes obo:MS_1002137c

TOPP map alignerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002147
Super-classes obo:MS_1000752c
Sub-classes obo:MS_1002150c
obo:MS_1002148c
obo:MS_1002149c

TOPP MapAlignerIdentificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002148
Super-classes obo:MS_1002147c

TOPP MapAlignerPoseClusteringc # Classes

URI http://purl.obolibrary.org/obo/MS_1002149
Super-classes obo:MS_1002147c

TOPP MapAlignerSpectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1002150
Super-classes obo:MS_1002147c

numerator data type attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002151
Super-classes obo:MS_1001806c

denominator data type attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002152
Super-classes obo:MS_1001806c

protein level PSM countsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002153
Super-classes obo:MS_1002738c

TOPP DTAExtractorc # Classes

URI http://purl.obolibrary.org/obo/MS_1002154
Super-classes obo:MS_1000752c

TOPP IDMergerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002155
Super-classes obo:MS_1000752c

TOPP IDFileConverterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002156
Super-classes obo:MS_1000752c

TOPP SpectraMergerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002157
Super-classes obo:MS_1000752c

TOPP MzTabExporterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002158
Super-classes obo:MS_1000752c

TOPP MassTraceExtractorc # Classes

URI http://purl.obolibrary.org/obo/MS_1002159
Super-classes obo:MS_1000752c

TOPP PrecursorMassCorrectorc # Classes

URI http://purl.obolibrary.org/obo/MS_1002160
Super-classes obo:MS_1000752c

TOPP HighResPrecursorMassCorrectorc # Classes

URI http://purl.obolibrary.org/obo/MS_1002161
Super-classes obo:MS_1000752c

TOPP AdditiveSeriesc # Classes

URI http://purl.obolibrary.org/obo/MS_1002162
Super-classes obo:MS_1000752c

TOPP Dechargerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002163
Super-classes obo:MS_1000752c

TOPP EICExtractorc # Classes

URI http://purl.obolibrary.org/obo/MS_1002164
Super-classes obo:MS_1000752c

TOPP feature finderc # Classes

URI http://purl.obolibrary.org/obo/MS_1002165
Super-classes obo:MS_1000752c
Sub-classes obo:MS_1002169c
obo:MS_1002168c
obo:MS_1002166c
obo:MS_1002170c
obo:MS_1002167c

TOPP FeatureFinderCentroidedc # Classes

URI http://purl.obolibrary.org/obo/MS_1002166
Super-classes obo:MS_1002165c

TOPP FeatureFinderRawc # Classes

URI http://purl.obolibrary.org/obo/MS_1002167
Super-classes obo:MS_1002165c

TOPP FeatureFinderIsotopeWaveletc # Classes

URI http://purl.obolibrary.org/obo/MS_1002168
Super-classes obo:MS_1002165c

TOPP FeatureFinderMetaboc # Classes

URI http://purl.obolibrary.org/obo/MS_1002169
Super-classes obo:MS_1002165c

TOPP FeatureFinderMRMc # Classes

URI http://purl.obolibrary.org/obo/MS_1002170
Super-classes obo:MS_1002165c

TOPP ProteinQuantifierc # Classes

URI http://purl.obolibrary.org/obo/MS_1002171
Super-classes obo:MS_1000752c

TOPP ConsensusMapNormalizerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002172
Super-classes obo:MS_1000752c

TOPP MapRTTransformerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002173
Super-classes obo:MS_1000752c

TOPP feature linkerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002174
Super-classes obo:MS_1000752c
Sub-classes obo:MS_1002177c
obo:MS_1002176c
obo:MS_1002175c

TOPP FeatureLinkerLabeledc # Classes

URI http://purl.obolibrary.org/obo/MS_1002175
Super-classes obo:MS_1002174c

TOPP FeatureLinkerUnlabeledc # Classes

URI http://purl.obolibrary.org/obo/MS_1002176
Super-classes obo:MS_1002174c

TOPP FeatureLinkerUnlabeledQTc # Classes

URI http://purl.obolibrary.org/obo/MS_1002177
Super-classes obo:MS_1002174c

TOPP CompNovoc # Classes

URI http://purl.obolibrary.org/obo/MS_1002178
Super-classes obo:MS_1000752c

TOPP CompNovoCIDc # Classes

URI http://purl.obolibrary.org/obo/MS_1002179
Super-classes obo:MS_1000752c

TOPP software adaptorc # Classes

URI http://purl.obolibrary.org/obo/MS_1002180
Super-classes obo:MS_1000752c
Sub-classes obo:MS_1002181c
obo:MS_1002183c
obo:MS_1002182c
obo:MS_1002184c
obo:MS_1002185c
obo:MS_1002186c

TOPP InspectAdapterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002181
Super-classes obo:MS_1002180c

TOPP MascotAdapterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002182
Super-classes obo:MS_1002180c

TOPP MascotAdapterOnlinec # Classes

URI http://purl.obolibrary.org/obo/MS_1002183
Super-classes obo:MS_1002180c

TOPP OMSSAAdapterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002184
Super-classes obo:MS_1002180c

TOPP PepNovoAdapterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002185
Super-classes obo:MS_1002180c

TOPP XTandemAdapterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002186
Super-classes obo:MS_1002180c

TOPP SpecLibSearcherc # Classes

URI http://purl.obolibrary.org/obo/MS_1002187
Super-classes obo:MS_1000752c

TOPP ConsensusIDc # Classes

URI http://purl.obolibrary.org/obo/MS_1002188
Super-classes obo:MS_1000752c

TOPP IDConflictResolverc # Classes

URI http://purl.obolibrary.org/obo/MS_1002189
Super-classes obo:MS_1000752c

TOPP IDFilterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002190
Super-classes obo:MS_1000752c

TOPP IDMapperc # Classes

URI http://purl.obolibrary.org/obo/MS_1002191
Super-classes obo:MS_1000752c

TOPP IDPosteriorErrorProbabilityc # Classes

URI http://purl.obolibrary.org/obo/MS_1002192
Super-classes obo:MS_1000752c

TOPP IDRTCalibrationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002193
Super-classes obo:MS_1000752c

TOPP PeptideIndexerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002194
Super-classes obo:MS_1000752c

TOPP PrecursorIonSelectorc # Classes

URI http://purl.obolibrary.org/obo/MS_1002195
Super-classes obo:MS_1000752c

TOPP MRMMapperc # Classes

URI http://purl.obolibrary.org/obo/MS_1002196
Super-classes obo:MS_1000752c

TOPP OpenSwath componentc # Classes

URI http://purl.obolibrary.org/obo/MS_1002197
Super-classes obo:MS_1000752c
Sub-classes obo:MS_1002198c
obo:MS_1002202c
obo:MS_1002199c
obo:MS_1002201c
obo:MS_1002200c

TOPP OpenSwathAnalyzerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002198
Super-classes obo:MS_1002197c

TOPP OpenSwathChromatogramExtractorc # Classes

URI http://purl.obolibrary.org/obo/MS_1002199
Super-classes obo:MS_1002197c

TOPP OpenSwathDecoyGeneratorc # Classes

URI http://purl.obolibrary.org/obo/MS_1002200
Super-classes obo:MS_1002197c

TOPP OpenSwathFeatureXMLToTSVc # Classes

URI http://purl.obolibrary.org/obo/MS_1002201
Super-classes obo:MS_1002197c

TOPP OpenSwathRTNormalizerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002202
Super-classes obo:MS_1002197c

TOPP ProteinInferencec # Classes

URI http://purl.obolibrary.org/obo/MS_1002203
Super-classes obo:MS_1000752c

TOPP FalseDiscoveryRatec # Classes

URI http://purl.obolibrary.org/obo/MS_1002204
Super-classes obo:MS_1000752c

ProteoWizard msconvertc # Classes

URI http://purl.obolibrary.org/obo/MS_1002205
Super-classes obo:MS_1000615c

ProteoWizard idconvertc # Classes

URI http://purl.obolibrary.org/obo/MS_1002206
Super-classes obo:MS_1000615c

ProteoWizard chainsawc # Classes

URI http://purl.obolibrary.org/obo/MS_1002207
Super-classes obo:MS_1000615c

ProteoWizard msaccessc # Classes

URI http://purl.obolibrary.org/obo/MS_1002208
Super-classes obo:MS_1000615c

ProteoWizard SeeMSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002209
Super-classes obo:MS_1000615c

IsobariQc # Classes

URI http://purl.obolibrary.org/obo/MS_1002210
Super-classes obo:MS_1001456c
obo:MS_1001139c

Variance stabilizing normalizationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002211
Super-classes obo:MS_1001861c

IPTL quantitation analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1002212
Super-classes obo:MS_1002009c

PAnalyzer:conclusive proteinc # Classes

URI http://purl.obolibrary.org/obo/MS_1002213
Super-classes obo:MS_1001600c

PAnalyzer:indistinguishable proteinc # Classes

URI http://purl.obolibrary.org/obo/MS_1002214
Super-classes obo:MS_1001600c

PAnalyzer:non-conclusive proteinc # Classes

URI http://purl.obolibrary.org/obo/MS_1002215
Super-classes obo:MS_1001600c

PAnalyzer:ambiguous group memberc # Classes

URI http://purl.obolibrary.org/obo/MS_1002216
Super-classes obo:MS_1001600c

decoy peptidec # Classes

URI http://purl.obolibrary.org/obo/MS_1002217
Super-classes obo:MS_1001105c

percent collision energy ramp startc # Classes

URI http://purl.obolibrary.org/obo/MS_1002218
Super-classes obo:MS_1000138c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000187c

percent collision energy ramp endc # Classes

URI http://purl.obolibrary.org/obo/MS_1002219
Super-classes obo:MS_1000138c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000187c

MRMaidc # Classes

URI http://purl.obolibrary.org/obo/MS_1002220
Super-classes obo:MS_1000871c

MRMaid:peptide scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002221
Super-classes obo:MS_1002363c
obo:MS_1001105c

SRM transition attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002222
Super-classes obo:MS_1000455c
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000908c
Sub-classes obo:MS_1002228c
obo:MS_1001967c
obo:MS_1002223c
obo:MS_1002227c
obo:MS_1002224c

precursor ion detection probabilityc # Classes

URI http://purl.obolibrary.org/obo/MS_1002223
Super-classes obo:MS_1002222c

product ion detection probabilityc # Classes

URI http://purl.obolibrary.org/obo/MS_1002224
Super-classes obo:MS_1002222c

average product ion intensityc # Classes

URI http://purl.obolibrary.org/obo/MS_1002225
Super-classes obo:MS_1001226c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000905c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000131c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000132c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000814c

product ion intensity standard deviationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002226
Super-classes obo:MS_1001226c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000132c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000905c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000814c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000131c

number of product ion observationsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002227
Super-classes obo:MS_1002222c

number of precursor ion observationsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002228
Super-classes obo:MS_1002222c

ProteomeDiscoverer:Mascot:Significance Middlec # Classes

URI http://purl.obolibrary.org/obo/MS_1002229
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Mascot:Significance Highc # Classes

URI http://purl.obolibrary.org/obo/MS_1002230
Super-classes obo:MS_1002101c

regular expressions for a GUIDc # Classes

URI http://purl.obolibrary.org/obo/MS_1002231
Super-classes obo:MS_1002479c

ProteomeDiscoverer:Default FDR calculatorc # Classes

URI http://purl.obolibrary.org/obo/MS_1002232
Super-classes obo:MS_1002101c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002231c

ProteomeDiscoverer:SEQUEST:Low resolution spectra containedc # Classes

URI http://purl.obolibrary.org/obo/MS_1002233
Super-classes obo:MS_1002101c

selected precursor m/zc # Classes

URI http://purl.obolibrary.org/obo/MS_1002234
Super-classes obo:MS_1000455c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000040c

ProteoGrouper:PDH scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002235
Super-classes obo:MS_1002363c

ProteoGrouper:PAG scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002236
Super-classes obo:MS_1002368c

mzidLibc # Classes

URI http://purl.obolibrary.org/obo/MS_1002237
Super-classes obo:MS_1001456c
Sub-classes obo:MS_1002247c
obo:MS_1002238c
obo:MS_1002242c
obo:MS_1002243c
obo:MS_1002245c
obo:MS_1002241c
obo:MS_1002244c
obo:MS_1002240c
obo:MS_1002239c
obo:MS_1002246c

mzidLib:Omssa2Mzidc # Classes

URI http://purl.obolibrary.org/obo/MS_1002238
Super-classes obo:MS_1002237c

mzidLib:Tandem2Mzidc # Classes

URI http://purl.obolibrary.org/obo/MS_1002239
Super-classes obo:MS_1002237c

mzidLib:Csv2Mzidc # Classes

URI http://purl.obolibrary.org/obo/MS_1002240
Super-classes obo:MS_1002237c

mzidLib:ProteoGrouperc # Classes

URI http://purl.obolibrary.org/obo/MS_1002241
Super-classes obo:MS_1002237c

mzidLib:Thresholderc # Classes

URI http://purl.obolibrary.org/obo/MS_1002242
Super-classes obo:MS_1002237c

mzidLib:Perform emPAI on mzidc # Classes

URI http://purl.obolibrary.org/obo/MS_1002243
Super-classes obo:MS_1002237c

mzidLib:FalseDiscoveryRatec # Classes

URI http://purl.obolibrary.org/obo/MS_1002244
Super-classes obo:MS_1002237c

mzidLib:Mzidentml2Csvc # Classes

URI http://purl.obolibrary.org/obo/MS_1002245
Super-classes obo:MS_1002237c

mzidLib:CombineSearchEnginesc # Classes

URI http://purl.obolibrary.org/obo/MS_1002246
Super-classes obo:MS_1002237c

mzidLib:InsertMetaDataFromFastac # Classes

URI http://purl.obolibrary.org/obo/MS_1002247
Super-classes obo:MS_1002237c

SEQUEST:spscorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002248
Super-classes obo:MS_1001143c

SEQUEST:sprankc # Classes

URI http://purl.obolibrary.org/obo/MS_1002249
Super-classes obo:MS_1001143c

SEQUEST:deltacnstarc # Classes

URI http://purl.obolibrary.org/obo/MS_1002250
Super-classes obo:MS_1001143c

Cometc # Classes

URI http://purl.obolibrary.org/obo/MS_1002251
Super-classes obo:MS_1001456c

Comet:xcorrc # Classes

URI http://purl.obolibrary.org/obo/MS_1002252
Super-classes obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

Comet:deltacnc # Classes

URI http://purl.obolibrary.org/obo/MS_1002253
Super-classes obo:MS_1001143c

Comet:deltacnstarc # Classes

URI http://purl.obolibrary.org/obo/MS_1002254
Super-classes obo:MS_1001143c

Comet:spscorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002255
Super-classes obo:MS_1001143c

Comet:sprankc # Classes

URI http://purl.obolibrary.org/obo/MS_1002256
Super-classes obo:MS_1001143c

Comet:expectation valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002257
Super-classes obo:MS_1001153c

Comet:matched ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002258
Super-classes obo:MS_1001143c

Comet:total ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002259
Super-classes obo:MS_1001143c

PSM:FDR thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002260
Super-classes obo:MS_1002483c

Byonicc # Classes

URI http://purl.obolibrary.org/obo/MS_1002261
Super-classes obo:MS_1001456c

Byonic:Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002262
Super-classes obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

Byonic:Delta Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002263
Super-classes obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

Byonic:DeltaMod Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002264
Super-classes obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

Byonic:PEPc # Classes

URI http://purl.obolibrary.org/obo/MS_1002265
Super-classes obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002109c

Byonic:Peptide LogProbc # Classes

URI http://purl.obolibrary.org/obo/MS_1002266
Super-classes obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002109c

Byonic:Protein LogProbc # Classes

URI http://purl.obolibrary.org/obo/MS_1002267
Super-classes obo:MS_1002363c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002109c

Byonic:Best LogProbc # Classes

URI http://purl.obolibrary.org/obo/MS_1002268
Super-classes obo:MS_1001153c
obo:MS_1001116c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002109c

Byonic:Best Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002269
Super-classes obo:MS_1002363c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

chromatography separationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002270
Super-classes obo:MS_1000857c
Sub-classes obo:MS_1002272c
obo:MS_1002271c

liquid chromatography separationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002271
Super-classes obo:MS_1002270c

gas chromatography separationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002272
Super-classes obo:MS_1002270c

detector potentialc # Classes

URI http://purl.obolibrary.org/obo/MS_1002273
Super-classes obo:MS_1000481c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000218c

SQ Detector 2c # Classes

URI http://purl.obolibrary.org/obo/MS_1002274
Super-classes obo:MS_1000126c

Xevo G2-S Tofc # Classes

URI http://purl.obolibrary.org/obo/MS_1002275
Super-classes obo:MS_1000126c

Xevo G2-S QTofc # Classes

URI http://purl.obolibrary.org/obo/MS_1002276
Super-classes obo:MS_1000126c

AutoSpec Premierc # Classes

URI http://purl.obolibrary.org/obo/MS_1002277
Super-classes obo:MS_1000126c

Pegasus IIIc # Classes

URI http://purl.obolibrary.org/obo/MS_1002278
Super-classes obo:MS_1001800c

maXis 4Gc # Classes

URI http://purl.obolibrary.org/obo/MS_1002279
Super-classes obo:MS_1001547c

compactc # Classes

URI http://purl.obolibrary.org/obo/MS_1002280
Super-classes obo:MS_1001536c

SRM feature level quantitationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002281
Super-classes obo:MS_1001838c

SRM peptide level quantitationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002282
Super-classes obo:MS_1001838c

SRM protein level quantitationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002283
Super-classes obo:MS_1001838c

SRM proteingroup level quantitationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002284
Super-classes obo:MS_1001838c

Trans-Proteomic Pipelinec # Classes

URI http://purl.obolibrary.org/obo/MS_1002285
Super-classes obo:MS_1001456c

Trans-Proteomic Pipeline softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1002286
Super-classes obo:MS_1001456c
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1002285c
Sub-classes obo:MS_1002288c
obo:MS_1002290c
obo:MS_1002291c
obo:MS_1002574c
obo:MS_1002292c
obo:MS_1002289c
obo:MS_1002287c

PeptideProphetc # Classes

URI http://purl.obolibrary.org/obo/MS_1002287
Super-classes obo:MS_1002286c

iProphetc # Classes

URI http://purl.obolibrary.org/obo/MS_1002288
Super-classes obo:MS_1002286c

ProteinProphetc # Classes

URI http://purl.obolibrary.org/obo/MS_1002289
Super-classes obo:MS_1002286c

XPRESSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002290
Super-classes obo:MS_1002286c

Librac # Classes

URI http://purl.obolibrary.org/obo/MS_1002291
Super-classes obo:MS_1002286c

PTMProphetc # Classes

URI http://purl.obolibrary.org/obo/MS_1002292
Super-classes obo:MS_1002286c

Bruker Daltonics SCION seriesc # Classes

URI http://purl.obolibrary.org/obo/MS_1002293
Super-classes obo:MS_1000122c
Sub-classes obo:MS_1002296c
obo:MS_1002295c

Bruker Daltonics EVOQ seriesc # Classes

URI http://purl.obolibrary.org/obo/MS_1002294
Super-classes obo:MS_1000122c
Sub-classes obo:MS_1002298c
obo:MS_1002297c

SCION SQc # Classes

URI http://purl.obolibrary.org/obo/MS_1002295
Super-classes obo:MS_1002293c

SCION TQc # Classes

URI http://purl.obolibrary.org/obo/MS_1002296
Super-classes obo:MS_1002293c

EVOQ Elitec # Classes

URI http://purl.obolibrary.org/obo/MS_1002297
Super-classes obo:MS_1002294c

EVOQ Qubec # Classes

URI http://purl.obolibrary.org/obo/MS_1002298
Super-classes obo:MS_1002294c

micrOTOF-Q IIIc # Classes

URI http://purl.obolibrary.org/obo/MS_1002299
Super-classes obo:MS_1001536c

amaZon Speed ETDc # Classes

URI http://purl.obolibrary.org/obo/MS_1002300
Super-classes obo:MS_1001545c

amaZon Speedc # Classes

URI http://purl.obolibrary.org/obo/MS_1002301
Super-classes obo:MS_1001545c

Bruker Container formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002302
Super-classes obo:MS_1000560c

Bruker Container nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002303
Super-classes obo:MS_1000767c

domain rangec # Classes

URI http://purl.obolibrary.org/obo/MS_1002304
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_0000000c
Sub-classes obo:MS_1002306c
obo:MS_1002349c
obo:MS_1002753c
obo:MS_1002305c

value between 0 and 1 inclusivec # Classes

URI http://purl.obolibrary.org/obo/MS_1002305
Super-classes obo:MS_1002304c

value greater than zeroc # Classes

URI http://purl.obolibrary.org/obo/MS_1002306
Super-classes obo:MS_1002304c

fragmentation ion typec # Classes

URI http://purl.obolibrary.org/obo/MS_1002307
Super-classes obo:MS_1001221c
Sub-classes obo:MS_1001236c
obo:MS_1002697c
obo:MS_1002671c
obo:MS_1001220c
obo:MS_1001234c
obo:MS_1001523c
obo:MS_1001223c
obo:MS_1001224c
obo:MS_1002668c
obo:MS_1001515c
obo:MS_1001231c
obo:MS_1001367c
obo:MS_1001520c
obo:MS_1001519c
obo:MS_1002695c
obo:MS_1001366c
obo:MS_1001518c
obo:MS_1001235c
obo:MS_1001228c
obo:MS_1001368c
obo:MS_1001222c
obo:MS_1001230c
obo:MS_1001365c
obo:MS_1001233c
obo:MS_1001517c
obo:MS_1001239c
obo:MS_1001516c
obo:MS_1001237c
obo:MS_1002669c
obo:MS_1002670c
obo:MS_1001238c
obo:MS_1001229c
obo:MS_1001521c
obo:MS_1001232c
obo:MS_1001522c

fluorescence detectorc # Classes

URI http://purl.obolibrary.org/obo/MS_1002308
Super-classes obo:MS_1000026c
Sub-classes obo:MS_1000819c

Byonic: Peptide AbsLogProbc # Classes

URI http://purl.obolibrary.org/obo/MS_1002309
Super-classes obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

Byonic: Protein AbsLogProbc # Classes

URI http://purl.obolibrary.org/obo/MS_1002310
Super-classes obo:MS_1002363c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

Byonic: Peptide AbsLogProb2Dc # Classes

URI http://purl.obolibrary.org/obo/MS_1002311
Super-classes obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

MS-Numpress linear prediction compressionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002312
Super-classes obo:MS_1000572c

MS-Numpress positive integer compressionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002313
Super-classes obo:MS_1000572c

MS-Numpress short logged float compressionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002314
Super-classes obo:MS_1000572c

consensus resultc # Classes

URI http://purl.obolibrary.org/obo/MS_1002315
Super-classes obo:MS_1001405c

ProteomeDiscoverer:Amanda:high confidence thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002316
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Amanda:middle confidence thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002317
Super-classes obo:MS_1002101c

ProteomeDiscoverer:automatic workloadc # Classes

URI http://purl.obolibrary.org/obo/MS_1002318
Super-classes obo:MS_1002101c

Amanda:AmandaScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002319
Super-classes obo:MS_1001143c

ProteomeDiscoverer:max differential modificationsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002320
Super-classes obo:MS_1002101c

ProteomeDiscoverer:max equal modificationsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002321
Super-classes obo:MS_1002101c

ProteomeDiscoverer:min peptide lengthc # Classes

URI http://purl.obolibrary.org/obo/MS_1002322
Super-classes obo:MS_1002101c

ProteomeDiscoverer:max peptide lengthc # Classes

URI http://purl.obolibrary.org/obo/MS_1002323
Super-classes obo:MS_1002101c

ProteomeDiscoverer:max number neutral lossc # Classes

URI http://purl.obolibrary.org/obo/MS_1002324
Super-classes obo:MS_1002101c

ProteomeDiscoverer:max number neutral loss modificationsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002325
Super-classes obo:MS_1002101c

ProteomeDiscoverer:use flanking ionsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002326
Super-classes obo:MS_1002101c

ProteomeDiscoverer:max number of same modifsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002327
Super-classes obo:MS_1002101c

ProteomeDiscoverer:perform deisotopingc # Classes

URI http://purl.obolibrary.org/obo/MS_1002328
Super-classes obo:MS_1002101c

ProteomeDiscoverer:ion settingsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002329
Super-classes obo:MS_1002101c

ProteomeDiscoverer:3. Static Modificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002330
Description

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Static Modification (MS:1001645) instead.
Super-classes obo:MS_1002101c

ProteomeDiscoverer:5. Dynamic Modificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002331
Description

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead.
Super-classes obo:MS_1002101c

lab headc # Classes

URI http://purl.obolibrary.org/obo/MS_1002332
Super-classes obo:MS_1002033c

conversion softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1002333
Super-classes obo:MS_1001457c
Sub-classes obo:MS_1002334c
obo:MS_1002991c
obo:MS_1002335c

ProConc # Classes

URI http://purl.obolibrary.org/obo/MS_1002334
Super-classes obo:MS_1002333c

PRIDE Converter2c # Classes

URI http://purl.obolibrary.org/obo/MS_1002335
Super-classes obo:MS_1002333c

Amandac # Classes

URI http://purl.obolibrary.org/obo/MS_1002336
Super-classes obo:MS_1001456c

Andromedac # Classes

URI http://purl.obolibrary.org/obo/MS_1002337
Super-classes obo:MS_1001456c

Andromeda:scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002338
Super-classes obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

site:global FDRc # Classes

URI http://purl.obolibrary.org/obo/MS_1002339
Super-classes obo:MS_1001405c

ProteomeXchange project tagc # Classes

URI http://purl.obolibrary.org/obo/MS_1002340
Super-classes obo:MS_1000878c

second-pass peptide identificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002341
Super-classes obo:MS_1001105c

MZminec # Classes

URI http://purl.obolibrary.org/obo/MS_1002342
Super-classes obo:MS_1001457c
obo:MS_1001456c

ion stability typec # Classes

URI http://purl.obolibrary.org/obo/MS_1002343
Description

This child of the former purgatory term ion was made obsolete.

Maltcmsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002344
Super-classes obo:MS_1001457c
obo:MS_1001456c

PSM-level attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002345
Super-classes obo:MS_1002694c
Sub-classes obo:MS_1002347c
obo:MS_1001362c
obo:MS_1000016c
obo:MS_1002892c

protein group-level identification attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002346
Super-classes obo:MS_1002694c
Sub-classes obo:MS_1002348c
obo:MS_1002415c

PSM-level identification statisticc # Classes

URI http://purl.obolibrary.org/obo/MS_1002347
Super-classes obo:MS_1002345c
Sub-classes obo:MS_1001143c
obo:MS_1002540c
obo:MS_1002351c
obo:MS_1002357c
obo:MS_1002353c
obo:MS_1002352c
obo:MS_1002354c

protein group-level identification statisticc # Classes

URI http://purl.obolibrary.org/obo/MS_1002348
Super-classes obo:MS_1002346c
Sub-classes obo:MS_1002370c
obo:MS_1002368c
obo:MS_1002461c
obo:MS_1002372c
obo:MS_1002371c
obo:MS_1002376c
obo:MS_1002373c

value greater than zero but less than or equal to onec # Classes

URI http://purl.obolibrary.org/obo/MS_1002349
Super-classes obo:MS_1002304c

PSM-level global FDRc # Classes

URI http://purl.obolibrary.org/obo/MS_1002350
Super-classes obo:MS_1002701c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c

PSM-level local FDRc # Classes

URI http://purl.obolibrary.org/obo/MS_1002351
Super-classes obo:MS_1002347c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c
Sub-classes obo:MS_1002929c
obo:MS_1002951c

PSM-level p-valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002352
Super-classes obo:MS_1002347c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c
Sub-classes obo:MS_1002953c
obo:MS_1002931c

PSM-level e-valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002353
Super-classes obo:MS_1002347c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002306c
Sub-classes obo:MS_1002722c
obo:MS_1002950c
obo:MS_1002053c
obo:MS_1002928c
obo:MS_1002721c
obo:MS_1002052c

PSM-level q-valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002354
Super-classes obo:MS_1002347c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c
Sub-classes obo:MS_1002723c
obo:MS_1002054c

PSM-level FDRScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002355
Super-classes obo:MS_1002363c
obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002349c

PSM-level combined FDRScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002356
Super-classes obo:MS_1002363c
obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002349c

PSM-level probabilityc # Classes

URI http://purl.obolibrary.org/obo/MS_1002357
Super-classes obo:MS_1002347c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c

search engine specific peptide sequence-level identification statisticc # Classes

URI http://purl.obolibrary.org/obo/MS_1002358
Super-classes obo:MS_1001092c
Sub-classes obo:MS_1002541c
obo:MS_1001396c
obo:MS_1002499c
obo:MS_1002468c
obo:MS_1002361c
obo:MS_1002360c

peptide sequence-level local FDRc # Classes

URI http://purl.obolibrary.org/obo/MS_1002359
Super-classes obo:MS_1001092c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c

distinct peptide-level FDRScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002360
Super-classes obo:MS_1002363c
obo:MS_1002358c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002349c

distinct peptide-level combined FDRScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002361
Super-classes obo:MS_1002363c
obo:MS_1002358c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002349c

peptide sequence-level probabilityc # Classes

URI http://purl.obolibrary.org/obo/MS_1002362
Super-classes obo:MS_1001092c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c

search engine specific score for proteinsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002363
Super-classes obo:MS_1001116c
Sub-classes obo:MS_1002050c
obo:MS_1001507c
obo:MS_1001392c
obo:MS_1002471c
obo:MS_1002470c
obo:MS_1002355c
obo:MS_1001372c
obo:MS_1001170c
obo:MS_1001157c
obo:MS_1001391c
obo:MS_1002468c
obo:MS_1001389c
obo:MS_1001164c
obo:MS_1002365c
obo:MS_1001889c
obo:MS_1001374c
obo:MS_1002394c
obo:MS_1002356c
obo:MS_1001166c
obo:MS_1002310c
obo:MS_1002269c
obo:MS_1002361c
obo:MS_1002512c
obo:MS_1002449c
obo:MS_1001394c
obo:MS_1002267c
obo:MS_1001951c
obo:MS_1001168c
obo:MS_1001158c
obo:MS_1002469c
obo:MS_1002366c
obo:MS_1002360c
obo:MS_1001390c
obo:MS_1001373c
obo:MS_1001398c
obo:MS_1002221c
obo:MS_1001169c
obo:MS_1002235c
obo:MS_1001165c
obo:MS_1001579c
obo:MS_1001167c
obo:MS_1001388c

protein-level local FDRc # Classes

URI http://purl.obolibrary.org/obo/MS_1002364
Super-classes obo:MS_1001116c

FDRScore for proteinsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002365
Super-classes obo:MS_1002363c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002349c

combined FDRScore for proteinsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002366
Super-classes obo:MS_1002363c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002349c

probability for proteinsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002367
Super-classes obo:MS_1001116c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c

search engine specific score for protein groupsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002368
Super-classes obo:MS_1002348c
Sub-classes obo:MS_1002663c
obo:MS_1002470c
obo:MS_1002236c
obo:MS_1002375c
obo:MS_1001164c
obo:MS_1002474c
obo:MS_1002828c
obo:MS_1002374c
obo:MS_1002475c
obo:MS_1001165c

protein group-level global FDRc # Classes

URI http://purl.obolibrary.org/obo/MS_1002369
Super-classes obo:MS_1002706c

protein group-level local FDRc # Classes

URI http://purl.obolibrary.org/obo/MS_1002370
Super-classes obo:MS_1002348c

protein group-level p-valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002371
Super-classes obo:MS_1002348c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c

protein group-level e-valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002372
Super-classes obo:MS_1002348c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002306c

protein group-level q-valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002373
Super-classes obo:MS_1002348c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c

protein group-level FDRScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002374
Super-classes obo:MS_1002368c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002349c

protein group-level combined FDRScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002375
Super-classes obo:MS_1002368c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002349c

protein group-level probabilityc # Classes

URI http://purl.obolibrary.org/obo/MS_1002376
Super-classes obo:MS_1002348c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c

ProteomeDiscoverer:Relaxed Score Thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002377
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Strict Score Thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002378
Super-classes obo:MS_1002101c

ProteomeDiscoverer:Peptide Without Protein Cut Off Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002379
Super-classes obo:MS_1002101c

false localization ratec # Classes

URI http://purl.obolibrary.org/obo/MS_1002380
Super-classes obo:MS_1001405c

MALDI Solutions LC-MALDIc # Classes

URI http://purl.obolibrary.org/obo/MS_1002381
Super-classes obo:MS_1001557c
obo:MS_1001455c
obo:MS_1001457c
obo:MS_1001456c

Shimadzu MALDI-7090c # Classes

URI http://purl.obolibrary.org/obo/MS_1002382
Super-classes obo:MS_1000602c

SCiLS softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1002383
Super-classes obo:MS_1000531c
Sub-classes obo:MS_1002384c

SCiLS Labc # Classes

URI http://purl.obolibrary.org/obo/MS_1002384
Super-classes obo:MS_1001457c
obo:MS_1001456c
obo:MS_1002383c

SCiLS Lab formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002385
Super-classes obo:MS_1000560c

preprocessing softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1002386
Super-classes obo:MS_1001457c

PIAc # Classes

URI http://purl.obolibrary.org/obo/MS_1002387
Super-classes obo:MS_1001456c
obo:MS_1002414c

PIA XML formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002388
Super-classes obo:MS_1001040c

PIA workflow parameterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002389
Super-classes obo:MS_1001302c
obo:MS_1002105c
Sub-classes obo:MS_1002397c
obo:MS_1002391c
obo:MS_1002400c
obo:MS_1002393c
obo:MS_1002392c
obo:MS_1002398c
obo:MS_1002399c
obo:MS_1002390c
obo:MS_1002396c
obo:MS_1002395c

PIA:FDRScore calculatedc # Classes

URI http://purl.obolibrary.org/obo/MS_1002390
Super-classes obo:MS_1002389c

PIA:Combined FDRScore calculatedc # Classes

URI http://purl.obolibrary.org/obo/MS_1002391
Super-classes obo:MS_1002389c

PIA:PSM sets createdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002392
Super-classes obo:MS_1002389c

PIA:used top identifications for FDRc # Classes

URI http://purl.obolibrary.org/obo/MS_1002393
Super-classes obo:MS_1002389c

PIA:protein scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002394
Super-classes obo:MS_1002363c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

PIA:protein inferencec # Classes

URI http://purl.obolibrary.org/obo/MS_1002395
Super-classes obo:MS_1002389c

PIA:protein inference filterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002396
Super-classes obo:MS_1002389c

PIA:protein inference scoringc # Classes

URI http://purl.obolibrary.org/obo/MS_1002397
Super-classes obo:MS_1002389c

PIA:protein inference used scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002398
Super-classes obo:MS_1002389c

PIA:protein inference used PSMsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002399
Super-classes obo:MS_1002389c

PIA:filterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002400
Super-classes obo:MS_1002389c

leading proteinc # Classes

URI http://purl.obolibrary.org/obo/MS_1002401
Super-classes obo:MS_1001101c

non-leading proteinc # Classes

URI http://purl.obolibrary.org/obo/MS_1002402
Super-classes obo:MS_1001101c

group representativec # Classes

URI http://purl.obolibrary.org/obo/MS_1002403
Super-classes obo:MS_1001101c

count of identified proteinsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002404
Super-classes obo:MS_1002704c

protein group-level result list attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002405
Super-classes obo:MS_1002699c
Sub-classes obo:MS_1002408c
obo:MS_1002706c
obo:MS_1002406c

count of identified clustersc # Classes

URI http://purl.obolibrary.org/obo/MS_1002406
Super-classes obo:MS_1002405c

cluster identifierc # Classes

URI http://purl.obolibrary.org/obo/MS_1002407
Super-classes obo:MS_1002698c

number of distinct protein sequencesc # Classes

URI http://purl.obolibrary.org/obo/MS_1002408
Super-classes obo:MS_1002405c

marginally distinguished proteinc # Classes

URI http://purl.obolibrary.org/obo/MS_1002409
Super-classes obo:MS_1001101c

Anubisc # Classes

URI http://purl.obolibrary.org/obo/MS_1002410
Super-classes obo:MS_1000871c
obo:MS_1001139c

TraML formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002411
Super-classes obo:MS_1002128c

total XIC areac # Classes

URI http://purl.obolibrary.org/obo/MS_1002412
Super-classes obo:MS_1002737c

product backgroundc # Classes

URI http://purl.obolibrary.org/obo/MS_1002413
Super-classes obo:MS_1001805c

postprocessing softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1002414
Super-classes obo:MS_1001457c
Sub-classes obo:MS_1002387c

protein group passes thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002415
Super-classes obo:MS_1002346c

Orbitrap Fusionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002416
Super-classes obo:MS_1000494c

Orbitrap Fusion ETDc # Classes

URI http://purl.obolibrary.org/obo/MS_1002417
Super-classes obo:MS_1000494c

TSQ Quantivac # Classes

URI http://purl.obolibrary.org/obo/MS_1002418
Super-classes obo:MS_1000494c

TSQ Endurac # Classes

URI http://purl.obolibrary.org/obo/MS_1002419
Super-classes obo:MS_1000494c

PASSEL experiment URIc # Classes

URI http://purl.obolibrary.org/obo/MS_1002420
Super-classes obo:MS_1000878c

Paragon input parameterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002421
Super-classes obo:MS_1001302c
Sub-classes obo:MS_1002423c
obo:MS_1002429c
obo:MS_1002431c
obo:MS_1002430c
obo:MS_1002425c
obo:MS_1002424c
obo:MS_1002447c
obo:MS_1002427c
obo:MS_1002426c
obo:MS_1002422c
obo:MS_1002428c

Paragon: sample typec # Classes

URI http://purl.obolibrary.org/obo/MS_1002422
Super-classes obo:MS_1002421c

Paragon: cysteine alkylationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002423
Super-classes obo:MS_1002421c

Paragon: instrument settingc # Classes

URI http://purl.obolibrary.org/obo/MS_1002424
Super-classes obo:MS_1002421c

Paragon: search effortc # Classes

URI http://purl.obolibrary.org/obo/MS_1002425
Super-classes obo:MS_1002421c

Paragon: ID focusc # Classes

URI http://purl.obolibrary.org/obo/MS_1002426
Super-classes obo:MS_1002421c

Paragon: FDR analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1002427
Super-classes obo:MS_1002421c

Paragon: quantitationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002428
Super-classes obo:MS_1002421c

Paragon: background correctionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002429
Super-classes obo:MS_1002421c

Paragon: bias correctionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002430
Super-classes obo:MS_1002421c

Paragon: channel to use as denominator in ratiosc # Classes

URI http://purl.obolibrary.org/obo/MS_1002431
Super-classes obo:MS_1002421c

search engine specific input metadatac # Classes

URI http://purl.obolibrary.org/obo/MS_1002432
Super-classes obo:MS_1001249c
Sub-classes obo:MS_1002433c

Paragon: modified data dictionary or parameter translationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002433
Super-classes obo:MS_1002432c

number of spectra searchedc # Classes

URI http://purl.obolibrary.org/obo/MS_1002434
Super-classes obo:MS_1001249c

data processing start timec # Classes

URI http://purl.obolibrary.org/obo/MS_1002435
Super-classes obo:MS_1000630c

Paragon: digestionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002436
Super-classes obo:MS_1001249c

number of decoy sequencesc # Classes

URI http://purl.obolibrary.org/obo/MS_1002437
Super-classes obo:MS_1001011c

spectrum identification list result detailsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002438
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001000c
Sub-classes obo:MS_1002440c
obo:MS_1002439c

final PSM listc # Classes

URI http://purl.obolibrary.org/obo/MS_1002439
Super-classes obo:MS_1002438c

intermediate PSM listc # Classes

URI http://purl.obolibrary.org/obo/MS_1002440
Super-classes obo:MS_1002438c

Andi-MS formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002441
Super-classes obo:MS_1000560c

chromatograph file formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002442
Super-classes obo:MS_1001459c
Sub-classes obo:MS_1002443c

Andi-CHROM formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002443
Super-classes obo:MS_1002442c

6420 Triple Quadrupole LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002444
Super-classes obo:MS_1000490c

6460 Triple Quadrupole LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002445
Super-classes obo:MS_1000490c

6490 Triple Quadrupole LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002446
Super-classes obo:MS_1000490c

Paragon:special factorc # Classes

URI http://purl.obolibrary.org/obo/MS_1002447
Super-classes obo:MS_1002421c

PEAKS:inChorusPeptideScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002448
Super-classes obo:MS_1001143c

PEAKS:inChorusProteinScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002449
Super-classes obo:MS_1002363c

param: b ion-H3PO4 DEPRECATEDc # Classes

URI http://purl.obolibrary.org/obo/MS_1002450
Super-classes obo:MS_1001066c

param: y ion-H3PO4 DEPRECATEDc # Classes

URI http://purl.obolibrary.org/obo/MS_1002451
Super-classes obo:MS_1001066c

Mauic # Classes

URI http://purl.obolibrary.org/obo/MS_1002452
Super-classes obo:MS_1001457c
obo:MS_1001456c

No fixed modifications searchedc # Classes

URI http://purl.obolibrary.org/obo/MS_1002453
Super-classes obo:MS_1002094c

No variable modifications searchedc # Classes

URI http://purl.obolibrary.org/obo/MS_1002454
Super-classes obo:MS_1002094c

H2O neutral lossc # Classes

URI http://purl.obolibrary.org/obo/MS_1002455
Description

This term was obsoleted because it should be replaced by MS:1000336 with value H2O.
Super-classes obo:MS_1000336c
obo:MS_1002473c

NH3 neutral lossc # Classes

URI http://purl.obolibrary.org/obo/MS_1002456
Description

This term was obsoleted because it should be replaced by MS:1000336 with value NH3.
Super-classes obo:MS_1000336c
obo:MS_1002473c

H3PO4 neutral lossc # Classes

URI http://purl.obolibrary.org/obo/MS_1002457
Description

This term was obsoleted because it should be replaced by MS:1000336 with value H3PO4.
Super-classes obo:MS_1000336c
obo:MS_1002473c

PeptideShakerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002458
Super-classes obo:MS_1001456c

MS Amanda csv formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002459
Super-classes obo:MS_1001040c

protein group-level global FNRc # Classes

URI http://purl.obolibrary.org/obo/MS_1002460
Super-classes obo:MS_1002706c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c

protein group-level confidencec # Classes

URI http://purl.obolibrary.org/obo/MS_1002461
Super-classes obo:MS_1002348c

peptide sequence-level global FNRc # Classes

URI http://purl.obolibrary.org/obo/MS_1002462
Super-classes obo:MS_1002703c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c

peptide sequence-level global confidencec # Classes

URI http://purl.obolibrary.org/obo/MS_1002463
Super-classes obo:MS_1002703c

PSM-level global FNRc # Classes

URI http://purl.obolibrary.org/obo/MS_1002464
Super-classes obo:MS_1002701c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c

PSM-level global confidencec # Classes

URI http://purl.obolibrary.org/obo/MS_1002465
Super-classes obo:MS_1002701c

PeptideShaker PSM scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002466
Super-classes obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

PeptideShaker PSM confidencec # Classes

URI http://purl.obolibrary.org/obo/MS_1002467
Super-classes obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

PeptideShaker peptide scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002468
Super-classes obo:MS_1002363c
obo:MS_1002358c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

PeptideShaker peptide confidencec # Classes

URI http://purl.obolibrary.org/obo/MS_1002469
Super-classes obo:MS_1002363c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

PeptideShaker protein group scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002470
Super-classes obo:MS_1002363c
obo:MS_1002368c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

PeptideShaker protein group confidencec # Classes

URI http://purl.obolibrary.org/obo/MS_1002471
Super-classes obo:MS_1002363c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

trap-type collision-induced dissociationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002472
Super-classes obo:MS_1000133c

ion series considered in searchc # Classes

URI http://purl.obolibrary.org/obo/MS_1002473
Super-classes obo:MS_1001249c
Sub-classes obo:MS_1001260c
obo:MS_1001407c
obo:MS_1001119c
obo:MS_1001258c
obo:MS_1001118c
obo:MS_1001406c
obo:MS_1001262c
obo:MS_1001263c
obo:MS_1001257c
obo:MS_1001261c
obo:MS_1001259c
obo:MS_1001408c
obo:MS_1001409c
obo:MS_1002457c
obo:MS_1001108c
obo:MS_1002455c
obo:MS_1002456c

ProteoAnnotator:non-canonical gene model scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002474
Super-classes obo:MS_1002368c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

ProteoAnnotator:count alternative peptidesc # Classes

URI http://purl.obolibrary.org/obo/MS_1002475
Super-classes obo:MS_1002368c

ion mobility drift timec # Classes

URI http://purl.obolibrary.org/obo/MS_1002476
Super-classes obo:MS_1000455c
obo:MS_1002892c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000028c

mean drift time arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1002477
Super-classes obo:MS_1002893c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000010c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000028c

mean charge arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1002478
Super-classes obo:MS_1000513c

regular expressionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002479
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_0000000c
Sub-classes obo:MS_1002665c
obo:MS_1002480c
obo:PEFF_1002001c
obo:MS_1002812c
obo:PEFF_1002002c
obo:MS_1001180c
obo:MS_1002231c
obo:MS_1002505c
obo:PEFF_1002003c

regular expression for a digital object identifier (DOI)c # Classes

URI http://purl.obolibrary.org/obo/MS_1002480
Super-classes obo:MS_1002479c

higher energy beam-type collision-induced dissociationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002481
Super-classes obo:MS_1000422c

statistical thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002482
Super-classes obo:MS_1001060c
Sub-classes obo:MS_1002573c
obo:MS_1002572c
obo:MS_1001494c

PSM-level statistical thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002483
Super-classes obo:MS_1002573c
Sub-classes obo:MS_1002260c

peptide-level statistical thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002484
Super-classes obo:MS_1002573c
Sub-classes obo:MS_1001868c
obo:MS_1001448c

protein-level statistical thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002485
Super-classes obo:MS_1002572c
Sub-classes obo:MS_1001447c

protein group-level statistical thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002486
Super-classes obo:MS_1002572c

MassIVE dataset identifierc # Classes

URI http://purl.obolibrary.org/obo/MS_1002487
Super-classes obo:MS_1000878c

MassIVE dataset URIc # Classes

URI http://purl.obolibrary.org/obo/MS_1002488
Super-classes obo:MS_1000878c

special processingc # Classes

URI http://purl.obolibrary.org/obo/MS_1002489
Super-classes obo:MS_1001080c
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001000c
Sub-classes obo:MS_1002493c
obo:MS_1002492c
obo:MS_1002495c
obo:MS_1002491c
obo:MS_1002494c
obo:MS_1002490c
obo:MS_1002635c

peptide-level scoringc # Classes

URI http://purl.obolibrary.org/obo/MS_1002490
Super-classes obo:MS_1002489c
Sub-classes obo:MS_1003017c
obo:MS_1003016c

modification localization scoringc # Classes

URI http://purl.obolibrary.org/obo/MS_1002491
Super-classes obo:MS_1002489c

consensus scoringc # Classes

URI http://purl.obolibrary.org/obo/MS_1002492
Super-classes obo:MS_1002489c

sample pre-fractionationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002493
Super-classes obo:MS_1002489c

cross-linking searchc # Classes

URI http://purl.obolibrary.org/obo/MS_1002494
Super-classes obo:MS_1002489c

no special processingc # Classes

URI http://purl.obolibrary.org/obo/MS_1002495
Super-classes obo:MS_1002489c

group PSMs by sequencec # Classes

URI http://purl.obolibrary.org/obo/MS_1002496
Super-classes obo:MS_1002658c

group PSMs by sequence with modificationsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002497
Super-classes obo:MS_1002658c

group PSMs by sequence with modifications and chargec # Classes

URI http://purl.obolibrary.org/obo/MS_1002498
Super-classes obo:MS_1002658c

peptide level scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002499
Description

This term was obsoleted because it was never intended to go in the CV.
Super-classes obo:MS_1002358c

peptide passes thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002500
Super-classes obo:MS_1001105c

no PSM thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002501
Super-classes obo:MS_1002701c

no peptide-level thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002502
Super-classes obo:MS_1001105c

PSM is used for peptide-level scoringc # Classes

URI http://purl.obolibrary.org/obo/MS_1002503
Super-classes obo:MS_1001105c

modification indexc # Classes

URI http://purl.obolibrary.org/obo/MS_1002504
Super-classes obo:MS_1001055c

regular expression for modification localization scoringc # Classes

URI http://purl.obolibrary.org/obo/MS_1002505
Super-classes obo:MS_1002479c

modification position scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002506
Super-classes obo:MS_1001055c
Sub-classes obo:MS_1002507c

modification rescoring:false localization ratec # Classes

URI http://purl.obolibrary.org/obo/MS_1002507
Super-classes obo:MS_1002506c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002505c

cross-linking attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002508
Super-classes obo:MS_1002694c
Sub-classes obo:MS_1002511c
obo:MS_1002509c
obo:MS_1002510c

cross-link donorc # Classes

URI http://purl.obolibrary.org/obo/MS_1002509
Super-classes obo:MS_1002508c

cross-link acceptorc # Classes

URI http://purl.obolibrary.org/obo/MS_1002510
Super-classes obo:MS_1002508c

cross-link spectrum identification itemc # Classes

URI http://purl.obolibrary.org/obo/MS_1002511
Super-classes obo:MS_1002508c

cross-linking scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002512
Super-classes obo:MS_1002363c

molecules per cellc # Classes

URI http://purl.obolibrary.org/obo/MS_1002513
Super-classes obo:MS_1001805c

absolute quantitation analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1002514
Super-classes obo:MS_1001833c

internal peptide reference usedc # Classes

URI http://purl.obolibrary.org/obo/MS_1002515
Super-classes obo:MS_1001832c

internal protein reference usedc # Classes

URI http://purl.obolibrary.org/obo/MS_1002516
Super-classes obo:MS_1001832c

internal reference abundancec # Classes

URI http://purl.obolibrary.org/obo/MS_1002517
Super-classes obo:MS_1001805c

Progenesis:protein group normalised abundancec # Classes

URI http://purl.obolibrary.org/obo/MS_1002518
Super-classes obo:MS_1002739c

Progenesis:protein group raw abundancec # Classes

URI http://purl.obolibrary.org/obo/MS_1002519
Super-classes obo:MS_1002739c

peptide group IDc # Classes

URI http://purl.obolibrary.org/obo/MS_1002520
Super-classes obo:MS_1001105c

mass spectrometry imagingc # Classes

URI http://purl.obolibrary.org/obo/MS_1002521
Super-classes obo:MS_1000857c

ProteomeDiscoverer:1. Static Terminal Modificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002522
Super-classes obo:MS_1002101c

Q Exactive HFc # Classes

URI http://purl.obolibrary.org/obo/MS_1002523
Super-classes obo:MS_1000494c

PepFinderc # Classes

URI http://purl.obolibrary.org/obo/MS_1002524
Super-classes obo:MS_1001457c

TSQ 8000 Evoc # Classes

URI http://purl.obolibrary.org/obo/MS_1002525
Super-classes obo:MS_1000494c

Exactive Plusc # Classes

URI http://purl.obolibrary.org/obo/MS_1002526
Super-classes obo:MS_1000494c

instrument specific scan attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002527
Super-classes obo:MS_1000503c
Sub-classes obo:MS_1002528c

synchronous prefilter selectionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002528
Super-classes obo:MS_1002527c

resolution arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1002529
Super-classes obo:MS_1000513c

baseline arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1002530
Super-classes obo:MS_1000513c

UIMF formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002531
Super-classes obo:MS_1000560c

UIMF nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002532
Super-classes obo:MS_1000767c

TripleTOF 6600c # Classes

URI http://purl.obolibrary.org/obo/MS_1002533
Super-classes obo:MS_1000121c

ProLuCID:xcorrc # Classes

URI http://purl.obolibrary.org/obo/MS_1002534
Super-classes obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

ProLuCID:deltacnc # Classes

URI http://purl.obolibrary.org/obo/MS_1002535
Super-classes obo:MS_1001143c

D-Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002536
Super-classes obo:MS_1001968c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002505c

MD-Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002537
Super-classes obo:MS_1001968c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002505c

PTM localization confidence metricc # Classes

URI http://purl.obolibrary.org/obo/MS_1002538
Super-classes obo:MS_1001405c
Sub-classes obo:MS_1002539c

PeptideShaker PTM confidence typec # Classes

URI http://purl.obolibrary.org/obo/MS_1002539
Super-classes obo:MS_1002538c

PeptideShaker PSM confidence typec # Classes

URI http://purl.obolibrary.org/obo/MS_1002540
Super-classes obo:MS_1002347c

PeptideShaker peptide confidence typec # Classes

URI http://purl.obolibrary.org/obo/MS_1002541
Super-classes obo:MS_1002358c

PeptideShaker protein confidence typec # Classes

URI http://purl.obolibrary.org/obo/MS_1002542
Super-classes obo:MS_1001116c

xiFDRc # Classes

URI http://purl.obolibrary.org/obo/MS_1002543
Super-classes obo:MS_1001456c

xic # Classes

URI http://purl.obolibrary.org/obo/MS_1002544
Super-classes obo:MS_1001456c

xi:scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002545
Super-classes obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

Skyline mzQuantML converterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002546
Super-classes obo:MS_1001456c
obo:MS_1001139c

normalized spectral abundance factorc # Classes

URI http://purl.obolibrary.org/obo/MS_1002547
Super-classes obo:MS_1001805c

distributed normalized spectral abundance factorc # Classes

URI http://purl.obolibrary.org/obo/MS_1002548
Super-classes obo:MS_1001805c

PTM localization distinct peptide-level statisticc # Classes

URI http://purl.obolibrary.org/obo/MS_1002549
Super-classes obo:MS_1002689c
Sub-classes obo:MS_1002554c
obo:MS_1002550c
obo:MS_1002553c
obo:MS_1002552c
obo:MS_1002551c

peptide:phosphoRS scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002550
Super-classes obo:MS_1002549c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002505c

peptide:Ascorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002551
Super-classes obo:MS_1002549c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002505c

peptide:H-Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002552
Super-classes obo:MS_1002549c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002505c

peptide:D-Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002553
Super-classes obo:MS_1002549c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002505c

peptide:MD-Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002554
Super-classes obo:MS_1002549c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002505c

PTM localization score thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002555
Super-classes obo:MS_1001405c
Sub-classes obo:MS_1002672c
obo:MS_1002563c
obo:MS_1002558c
obo:MS_1002565c
obo:MS_1002556c
obo:MS_1002564c
obo:MS_1002557c
obo:MS_1002568c
obo:MS_1002567c
obo:MS_1002562c
obo:MS_1002933c
obo:MS_1002566c
obo:MS_1002559c
obo:MS_1002561c
obo:MS_1002560c

Ascore thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002556
Super-classes obo:MS_1002555c

D-Score thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002557
Super-classes obo:MS_1002555c

MD-Score thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002558
Super-classes obo:MS_1002555c

H-Score thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002559
Super-classes obo:MS_1002555c

DeBunker:score thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002560
Super-classes obo:MS_1002555c

Mascot:PTM site assignment confidence thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002561
Super-classes obo:MS_1002555c

MSQuant:PTM-score thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002562
Super-classes obo:MS_1002555c

MaxQuant:PTM Score thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002563
Super-classes obo:MS_1002555c

MaxQuant:P-site localization probability thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002564
Super-classes obo:MS_1002555c

MaxQuant:PTM Delta Score thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002565
Super-classes obo:MS_1002555c

MaxQuant:Phospho (STY) Probabilities thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002566
Super-classes obo:MS_1002555c

phosphoRS score thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002567
Super-classes obo:MS_1002555c

phosphoRS site probability thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002568
Super-classes obo:MS_1002555c

ProteomeDiscoverer:Number of Spectra Processed At Oncec # Classes

URI http://purl.obolibrary.org/obo/MS_1002569
Super-classes obo:MS_1002101c

sequence multiply subsumable proteinc # Classes

URI http://purl.obolibrary.org/obo/MS_1002570
Super-classes obo:MS_1001101c

spectrum multiply subsumable proteinc # Classes

URI http://purl.obolibrary.org/obo/MS_1002571
Super-classes obo:MS_1001101c

protein detection statistical thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002572
Super-classes obo:MS_1002482c
Sub-classes obo:MS_1002485c
obo:MS_1002486c

spectrum identification statistical thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002573
Super-classes obo:MS_1002482c
Sub-classes obo:MS_1002483c
obo:MS_1002484c
obo:MS_1002909c

ASAPRatioc # Classes

URI http://purl.obolibrary.org/obo/MS_1002574
Super-classes obo:MS_1002286c

Tidec # Classes

URI http://purl.obolibrary.org/obo/MS_1002575
Super-classes obo:MS_1001456c

Andromeda result formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002576
Super-classes obo:MS_1001040c

2000 QTRAPc # Classes

URI http://purl.obolibrary.org/obo/MS_1002577
Super-classes obo:MS_1000121c

2500 QTRAPc # Classes

URI http://purl.obolibrary.org/obo/MS_1002578
Super-classes obo:MS_1000121c

3500 QTRAPc # Classes

URI http://purl.obolibrary.org/obo/MS_1002579
Super-classes obo:MS_1000121c

QTRAP 4500c # Classes

URI http://purl.obolibrary.org/obo/MS_1002580
Super-classes obo:MS_1000121c

QTRAP 6500c # Classes

URI http://purl.obolibrary.org/obo/MS_1002581
Super-classes obo:MS_1000121c

QTRAP 6500+c # Classes

URI http://purl.obolibrary.org/obo/MS_1002582
Super-classes obo:MS_1000121c

TripleTOF 4600c # Classes

URI http://purl.obolibrary.org/obo/MS_1002583
Super-classes obo:MS_1000121c

TripleTOF 5600+c # Classes

URI http://purl.obolibrary.org/obo/MS_1002584
Super-classes obo:MS_1000121c

API 100c # Classes

URI http://purl.obolibrary.org/obo/MS_1002585
Super-classes obo:MS_1000121c

API 100LCc # Classes

URI http://purl.obolibrary.org/obo/MS_1002586
Super-classes obo:MS_1000121c

API 165c # Classes

URI http://purl.obolibrary.org/obo/MS_1002587
Super-classes obo:MS_1000121c

API 300c # Classes

URI http://purl.obolibrary.org/obo/MS_1002588
Super-classes obo:MS_1000121c

API 350c # Classes

URI http://purl.obolibrary.org/obo/MS_1002589
Super-classes obo:MS_1000121c

API 365c # Classes

URI http://purl.obolibrary.org/obo/MS_1002590
Super-classes obo:MS_1000121c

Triple Quad 3500c # Classes

URI http://purl.obolibrary.org/obo/MS_1002591
Super-classes obo:MS_1000121c

Triple Quad 4500c # Classes

URI http://purl.obolibrary.org/obo/MS_1002592
Super-classes obo:MS_1000121c

Triple Quad 5500c # Classes

URI http://purl.obolibrary.org/obo/MS_1002593
Super-classes obo:MS_1000121c

Triple Quad 6500c # Classes

URI http://purl.obolibrary.org/obo/MS_1002594
Super-classes obo:MS_1000121c

Triple Quad 6500+c # Classes

URI http://purl.obolibrary.org/obo/MS_1002595
Super-classes obo:MS_1000121c

ProLuCIDc # Classes

URI http://purl.obolibrary.org/obo/MS_1002596
Super-classes obo:MS_1001456c

MS1 formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002597
Super-classes obo:MS_1000560c

DTASelectc # Classes

URI http://purl.obolibrary.org/obo/MS_1002598
Super-classes obo:MS_1001456c

splash keyc # Classes

URI http://purl.obolibrary.org/obo/MS_1002599
Super-classes obo:MS_1001405c

PRIDE XMLc # Classes

URI http://purl.obolibrary.org/obo/MS_1002600
Super-classes obo:MS_1002130c
obo:MS_1001405c

mzTabc # Classes

URI http://purl.obolibrary.org/obo/MS_1002601
Super-classes obo:MS_1000914c

sample labelc # Classes

URI http://purl.obolibrary.org/obo/MS_1002602
Super-classes obo:MS_1000548c
obo:MS_1002111c
Sub-classes obo:MS_1002771c
obo:MS_1002622c
obo:MS_1002611c
obo:MS_1002606c
obo:MS_1002615c
obo:MS_1002603c
obo:MS_1002778c

ICAT reagentc # Classes

URI http://purl.obolibrary.org/obo/MS_1002603
Super-classes obo:MS_1002602c
Sub-classes obo:MS_1002605c
obo:MS_1002604c

ICAT heavy reagentc # Classes

URI http://purl.obolibrary.org/obo/MS_1002604
Super-classes obo:MS_1002603c

ICAT light reagentc # Classes

URI http://purl.obolibrary.org/obo/MS_1002605
Super-classes obo:MS_1002603c

ICPL reagentc # Classes

URI http://purl.obolibrary.org/obo/MS_1002606
Super-classes obo:MS_1002602c
Sub-classes obo:MS_1002609c
obo:MS_1002607c
obo:MS_1002608c
obo:MS_1002610c

ICPL reagent 0c # Classes

URI http://purl.obolibrary.org/obo/MS_1002607
Super-classes obo:MS_1002606c

ICPL reagent 4c # Classes

URI http://purl.obolibrary.org/obo/MS_1002608
Super-classes obo:MS_1002606c

ICPL reagent 6c # Classes

URI http://purl.obolibrary.org/obo/MS_1002609
Super-classes obo:MS_1002606c

ICPL reagent 10c # Classes

URI http://purl.obolibrary.org/obo/MS_1002610
Super-classes obo:MS_1002606c

SILAC reagentc # Classes

URI http://purl.obolibrary.org/obo/MS_1002611
Super-classes obo:MS_1002602c
Sub-classes obo:MS_1002612c
obo:MS_1002613c
obo:MS_1002614c

SILAC heavy reagentc # Classes

URI http://purl.obolibrary.org/obo/MS_1002612
Super-classes obo:MS_1002611c

SILAC medium reagentc # Classes

URI http://purl.obolibrary.org/obo/MS_1002613
Super-classes obo:MS_1002611c

SILAC light reagentc # Classes

URI http://purl.obolibrary.org/obo/MS_1002614
Super-classes obo:MS_1002611c

TMT reagentc # Classes

URI http://purl.obolibrary.org/obo/MS_1002615
Super-classes obo:MS_1002602c
Sub-classes obo:MS_1002767c
obo:MS_1002617c
obo:MS_1002770c
obo:MS_1002620c
obo:MS_1002765c
obo:MS_1002768c
obo:MS_1002764c
obo:MS_1002616c
obo:MS_1002621c
obo:MS_1002618c
obo:MS_1002763c
obo:MS_1002766c
obo:MS_1002619c
obo:MS_1002769c

TMT reagent 126c # Classes

URI http://purl.obolibrary.org/obo/MS_1002616
Super-classes obo:MS_1002615c

TMT reagent 127c # Classes

URI http://purl.obolibrary.org/obo/MS_1002617
Super-classes obo:MS_1002615c

TMT reagent 128c # Classes

URI http://purl.obolibrary.org/obo/MS_1002618
Super-classes obo:MS_1002615c

TMT reagent 129c # Classes

URI http://purl.obolibrary.org/obo/MS_1002619
Super-classes obo:MS_1002615c

TMT reagent 130c # Classes

URI http://purl.obolibrary.org/obo/MS_1002620
Super-classes obo:MS_1002615c

TMT reagent 131c # Classes

URI http://purl.obolibrary.org/obo/MS_1002621
Super-classes obo:MS_1002615c

iTRAQ reagentc # Classes

URI http://purl.obolibrary.org/obo/MS_1002622
Super-classes obo:MS_1002602c
Sub-classes obo:MS_1002629c
obo:MS_1002630c
obo:MS_1002626c
obo:MS_1002624c
obo:MS_1002627c
obo:MS_1002625c
obo:MS_1002623c
obo:MS_1002628c

iTRAQ reagent 113c # Classes

URI http://purl.obolibrary.org/obo/MS_1002623
Super-classes obo:MS_1002622c

iTRAQ reagent 114c # Classes

URI http://purl.obolibrary.org/obo/MS_1002624
Super-classes obo:MS_1002622c

iTRAQ reagent 115c # Classes

URI http://purl.obolibrary.org/obo/MS_1002625
Super-classes obo:MS_1002622c

iTRAQ reagent 116c # Classes

URI http://purl.obolibrary.org/obo/MS_1002626
Super-classes obo:MS_1002622c

iTRAQ reagent 117c # Classes

URI http://purl.obolibrary.org/obo/MS_1002627
Super-classes obo:MS_1002622c

iTRAQ reagent 118c # Classes

URI http://purl.obolibrary.org/obo/MS_1002628
Super-classes obo:MS_1002622c

iTRAQ reagent 119c # Classes

URI http://purl.obolibrary.org/obo/MS_1002629
Super-classes obo:MS_1002622c

iTRAQ reagent 121c # Classes

URI http://purl.obolibrary.org/obo/MS_1002630
Super-classes obo:MS_1002622c

Electron-Transfer/Higher-Energy Collision Dissociation (EThcD)c # Classes

URI http://purl.obolibrary.org/obo/MS_1002631
Super-classes obo:MS_1000044c

jPOST dataset identifierc # Classes

URI http://purl.obolibrary.org/obo/MS_1002632
Super-classes obo:MS_1000878c

jPOST dataset URIc # Classes

URI http://purl.obolibrary.org/obo/MS_1002633
Super-classes obo:MS_1000878c

Q Exactive Plusc # Classes

URI http://purl.obolibrary.org/obo/MS_1002634
Super-classes obo:MS_1000494c

proteogenomics searchc # Classes

URI http://purl.obolibrary.org/obo/MS_1002635
Super-classes obo:MS_1002489c

proteogenomics attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002636
Super-classes obo:MS_1001105c
Sub-classes obo:MS_1002638c
obo:MS_1002643c
obo:MS_1002640c
obo:MS_1002641c
obo:MS_1002639c
obo:MS_1002637c
obo:MS_1002740c
obo:MS_1002741c
obo:MS_1002644c
obo:MS_1002642c

chromosome namec # Classes

URI http://purl.obolibrary.org/obo/MS_1002637
Super-classes obo:MS_1002636c

chromosome strandc # Classes

URI http://purl.obolibrary.org/obo/MS_1002638
Super-classes obo:MS_1002636c

peptide start on chromosomec # Classes

URI http://purl.obolibrary.org/obo/MS_1002639
Description

This term was obsoleted because it contains redundant info contained in term MS:1002643 - peptide start positions on chromosome.
Super-classes obo:MS_1002636c

peptide end on chromosomec # Classes

URI http://purl.obolibrary.org/obo/MS_1002640
Super-classes obo:MS_1002636c

peptide exon countc # Classes

URI http://purl.obolibrary.org/obo/MS_1002641
Super-classes obo:MS_1002636c

peptide exon nucleotide sizesc # Classes

URI http://purl.obolibrary.org/obo/MS_1002642
Super-classes obo:MS_1002636c

peptide start positions on chromosomec # Classes

URI http://purl.obolibrary.org/obo/MS_1002643
Super-classes obo:MS_1002636c

genome reference versionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002644
Super-classes obo:MS_1002636c

MSDKc # Classes

URI http://purl.obolibrary.org/obo/MS_1002645
Super-classes obo:MS_1001457c
obo:MS_1001456c

native spectrum identifier format, combined spectrac # Classes

URI http://purl.obolibrary.org/obo/MS_1002646
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000577c
Sub-classes obo:MS_1002651c
obo:MS_1002654c
obo:MS_1002656c
obo:MS_1002653c
obo:MS_1002819c
obo:MS_1002647c
obo:MS_1002649c
obo:MS_1002648c
obo:MS_1002655c
obo:MS_1002657c
obo:MS_1002650c
obo:MS_1002652c

Thermo nativeID format, combined spectrac # Classes

URI http://purl.obolibrary.org/obo/MS_1002647
Super-classes obo:MS_1002646c

Waters nativeID format, combined spectrac # Classes

URI http://purl.obolibrary.org/obo/MS_1002648
Super-classes obo:MS_1002646c

WIFF nativeID format, combined spectrac # Classes

URI http://purl.obolibrary.org/obo/MS_1002649
Super-classes obo:MS_1002646c

Bruker/Agilent YEP nativeID format, combined spectrac # Classes

URI http://purl.obolibrary.org/obo/MS_1002650
Super-classes obo:MS_1002646c

Bruker BAF nativeID format, combined spectrac # Classes

URI http://purl.obolibrary.org/obo/MS_1002651
Super-classes obo:MS_1002646c

Bruker FID nativeID format, combined spectrac # Classes

URI http://purl.obolibrary.org/obo/MS_1002652
Description

The nativeID must be the same as the source file ID.
Super-classes obo:MS_1002646c

multiple peak list nativeID format, combined spectrac # Classes

URI http://purl.obolibrary.org/obo/MS_1002653
Description

Used for conversion of peak list files with multiple spectra, i.e. MGF, PKL, merged DTA files. Index is the spectrum number in the file, starting from 0.
Super-classes obo:MS_1002646c

single peak list nativeID format, combined spectrac # Classes

URI http://purl.obolibrary.org/obo/MS_1002654
Description

The nativeID must be the same as the source file ID. Used for conversion of peak list files with one spectrum per file, typically folder of PKL or DTAs, each sourceFileRef is different.
Super-classes obo:MS_1002646c

scan number only nativeID format, combined spectrac # Classes

URI http://purl.obolibrary.org/obo/MS_1002655
Description

Used for conversion from mzXML, or DTA folder where native scan numbers can be derived.
Super-classes obo:MS_1002646c

spectrum identifier nativeID format, combined spectrac # Classes

URI http://purl.obolibrary.org/obo/MS_1002656
Description

Used for conversion from mzData. The spectrum id attribute is referenced.
Super-classes obo:MS_1002646c

mzML unique identifier, combined spectrac # Classes

URI http://purl.obolibrary.org/obo/MS_1002657
Description

A unique identifier of a spectrum stored in an mzML file.
Super-classes obo:MS_1002646c

identification parameterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002658
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001000c
Sub-classes obo:MS_1002496c
obo:MS_1002498c
obo:MS_1002497c

UniProtKB text sequence formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002659
Super-classes obo:MS_1001347c

UniProtKB XML sequence formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002660
Super-classes obo:MS_1001347c

Morpheusc # Classes

URI http://purl.obolibrary.org/obo/MS_1002661
Super-classes obo:MS_1001456c

Morpheus:Morpheus scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002662
Super-classes obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

Morpheus:summed Morpheus scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002663
Super-classes obo:MS_1002368c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

interaction score derived from cross-linkingc # Classes

URI http://purl.obolibrary.org/obo/MS_1002664
Super-classes obo:MS_1002675c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002665c
Sub-classes obo:MS_1002677c
obo:MS_1002676c

regular expression for interaction scores derived from cross-linkingc # Classes

URI http://purl.obolibrary.org/obo/MS_1002665
Super-classes obo:MS_1002479c

impact IIc # Classes

URI http://purl.obolibrary.org/obo/MS_1002666
Super-classes obo:MS_1001536c

impact HDc # Classes

URI http://purl.obolibrary.org/obo/MS_1002667
Super-classes obo:MS_1001536c

frag: iTRAQ 4plex reporter ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002668
Super-classes obo:MS_1002307c

frag: iTRAQ 8plex reporter ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002669
Super-classes obo:MS_1002307c

frag: TMT reporter ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002670
Super-classes obo:MS_1002307c

frag: TMT ETD reporter ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002671
Super-classes obo:MS_1002307c

no modification thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002672
Super-classes obo:MS_1002555c

OpenXQuestc # Classes

URI http://purl.obolibrary.org/obo/MS_1002673
Super-classes obo:MS_1000752c

X500R QTOFc # Classes

URI http://purl.obolibrary.org/obo/MS_1002674
Super-classes obo:MS_1000121c

cross-linking result detailsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002675
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1001000c
Sub-classes obo:MS_1002664c

protein-pair-level global FDRc # Classes

URI http://purl.obolibrary.org/obo/MS_1002676
Super-classes obo:MS_1002664c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002665c
http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c

residue-pair-level global FDRc # Classes

URI http://purl.obolibrary.org/obo/MS_1002677
Super-classes obo:MS_1002664c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002665c
http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c

supplemental beam-type collision-induced dissociationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002678
Super-classes obo:MS_1000422c

supplemental collision-induced dissociationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002679
Super-classes obo:MS_1000133c

supplemental collision energyc # Classes

URI http://purl.obolibrary.org/obo/MS_1002680
Super-classes obo:MS_1000510c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000266c

OpenXQuest:combined scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002681
Super-classes obo:MS_1001143c
obo:MS_1001153c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

OpenXQuest:xcorr commonc # Classes

URI http://purl.obolibrary.org/obo/MS_1002683
Super-classes obo:MS_1001153c
obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

OpenXQuest:match-oddsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002684
Super-classes obo:MS_1001153c
obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c
http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002306c

OpenXQuest:intsumc # Classes

URI http://purl.obolibrary.org/obo/MS_1002685
Super-classes obo:MS_1001153c
obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c
http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002306c

OpenXQuest:wTICc # Classes

URI http://purl.obolibrary.org/obo/MS_1002686
Super-classes obo:MS_1001153c
obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c
http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c

analysis attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002687
Super-classes obo:MS_1001405c
Sub-classes obo:MS_1002688c
obo:MS_1002693c

PTM localization attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002688
Super-classes obo:MS_1002687c
Sub-classes obo:MS_1002690c
obo:MS_1002689c

PTM localization single result statisticc # Classes

URI http://purl.obolibrary.org/obo/MS_1002689
Super-classes obo:MS_1002688c
Sub-classes obo:MS_1001968c
obo:MS_1002549c

PTM localization result list statisticc # Classes

URI http://purl.obolibrary.org/obo/MS_1002690
Super-classes obo:MS_1002688c
Sub-classes obo:MS_1002691c
obo:MS_1002692c

global FLRc # Classes

URI http://purl.obolibrary.org/obo/MS_1002691
Super-classes obo:MS_1002690c

local FLR at thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002692
Super-classes obo:MS_1002690c

identification attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002693
Super-classes obo:MS_1002687c
Sub-classes obo:MS_1002699c
obo:MS_1002694c

single identification result attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002694
Super-classes obo:MS_1002693c
Sub-classes obo:MS_1001221c
obo:MS_1002895c
obo:MS_1001153c
obo:MS_1001085c
obo:MS_1002346c
obo:MS_1002508c
obo:MS_1002888c
obo:MS_1002345c
obo:MS_1002698c
obo:MS_1001105c
obo:MS_1002904c

frag: isobaric label ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002695
Super-classes obo:MS_1002307c

secondary isotope peakc # Classes

URI http://purl.obolibrary.org/obo/MS_1002697
Super-classes obo:MS_1002307c

protein cluster identification attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002698
Super-classes obo:MS_1002694c
Sub-classes obo:MS_1002407c

result list attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002699
Super-classes obo:MS_1002693c
Sub-classes obo:MS_1002700c
obo:MS_1002405c
obo:MS_1002704c
obo:MS_1002702c

PSM-level result list attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002700
Super-classes obo:MS_1002699c
Sub-classes obo:MS_1002701c

PSM-level result list statisticc # Classes

URI http://purl.obolibrary.org/obo/MS_1002701
Super-classes obo:MS_1002700c
Sub-classes obo:MS_1002501c
obo:MS_1002350c
obo:MS_1002465c
obo:MS_1002464c

peptide sequence-level result list attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002702
Super-classes obo:MS_1002699c
Sub-classes obo:MS_1002703c

peptide sequence-level result list statisticc # Classes

URI http://purl.obolibrary.org/obo/MS_1002703
Super-classes obo:MS_1002702c
Sub-classes obo:MS_1002463c
obo:MS_1001364c
obo:MS_1002462c

protein-level result list attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002704
Super-classes obo:MS_1002699c
Sub-classes obo:MS_1002404c
obo:MS_1002705c

protein-level result list statisticc # Classes

URI http://purl.obolibrary.org/obo/MS_1002705
Super-classes obo:MS_1002704c
Sub-classes obo:MS_1001214c

protein group-level result list statisticc # Classes

URI http://purl.obolibrary.org/obo/MS_1002706
Super-classes obo:MS_1002405c
Sub-classes obo:MS_1002369c
obo:MS_1002460c

Pegasus BTc # Classes

URI http://purl.obolibrary.org/obo/MS_1002719
Super-classes obo:MS_1001800c

MSPathFinderc # Classes

URI http://purl.obolibrary.org/obo/MS_1002720
Super-classes obo:MS_1001456c

MSPathFinder:SpecEValuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002721
Super-classes obo:MS_1001143c
obo:MS_1002353c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002109c

MSPathFinder:EValuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002722
Super-classes obo:MS_1001143c
obo:MS_1002353c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002109c

MSPathFinder:QValuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002723
Super-classes obo:MS_1002354c
obo:MS_1001143c

MSPathFinder:PepQValuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002724
Super-classes obo:MS_1001143c

MSPathFinder:RawScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002725
Super-classes obo:MS_1001143c

SYNAPT G2-Sic # Classes

URI http://purl.obolibrary.org/obo/MS_1002726
Super-classes obo:MS_1000126c

MALDI SYNAPT G2-Sic # Classes

URI http://purl.obolibrary.org/obo/MS_1002727
Super-classes obo:MS_1000126c

Vion IMS QTofc # Classes

URI http://purl.obolibrary.org/obo/MS_1002728
Super-classes obo:MS_1000126c

Xevo G2 XS Tofc # Classes

URI http://purl.obolibrary.org/obo/MS_1002729
Super-classes obo:MS_1000126c

Xevo TQ-XSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002730
Super-classes obo:MS_1000126c

Xevo TQ-S microc # Classes

URI http://purl.obolibrary.org/obo/MS_1002731
Super-classes obo:MS_1000126c

Orbitrap Fusion Lumosc # Classes

URI http://purl.obolibrary.org/obo/MS_1002732
Super-classes obo:MS_1000494c

peptide-level spectral countc # Classes

URI http://purl.obolibrary.org/obo/MS_1002733
Super-classes obo:MS_1002737c

peptide ion-level spectral countc # Classes

URI http://purl.obolibrary.org/obo/MS_1002734
Super-classes obo:MS_1002737c

feature-level quantification datatypec # Classes

URI http://purl.obolibrary.org/obo/MS_1002735
Super-classes obo:MS_1001805c
Sub-classes obo:MS_1002829c
obo:MS_1001840c
obo:MS_1001896c
obo:MS_1002830c
obo:MS_1001849c
obo:MS_1002831c
obo:MS_1001841c
obo:MS_1001843c
obo:MS_1001903c
obo:MS_1002832c
obo:MS_1001844c

PSM-level quantification datatypec # Classes

URI http://purl.obolibrary.org/obo/MS_1002736
Super-classes obo:MS_1001805c

peptide-level quantification datatypec # Classes

URI http://purl.obolibrary.org/obo/MS_1002737
Super-classes obo:MS_1001805c
Sub-classes obo:MS_1001130c
obo:MS_1002412c
obo:MS_1001891c
obo:MS_1001899c
obo:MS_1001850c
obo:MS_1002734c
obo:MS_1002065c
obo:MS_1001900c
obo:MS_1002733c
obo:MS_1001132c
obo:MS_1001898c
obo:MS_1001897c
obo:MS_1002064c
obo:MS_1001131c
obo:MS_1001842c
obo:MS_1001895c
obo:MS_1001133c
obo:MS_1001893c

protein-level quantification datatypec # Classes

URI http://purl.obolibrary.org/obo/MS_1002738
Super-classes obo:MS_1001805c
Sub-classes obo:MS_1001905c
obo:MS_1001906c
obo:MS_1001860c
obo:MS_1001135c
obo:MS_1002153c
obo:MS_1001892c
obo:MS_1001136c
obo:MS_1001852c
obo:MS_1001851c
obo:MS_1001134c
obo:MS_1001890c
obo:MS_1002067c

protein group-level quantification datatypec # Classes

URI http://purl.obolibrary.org/obo/MS_1002739
Super-classes obo:MS_1001805c
Sub-classes obo:MS_1002519c
obo:MS_1002518c

unmapped peptidec # Classes

URI http://purl.obolibrary.org/obo/MS_1002740
Super-classes obo:MS_1002636c

unmapped proteinc # Classes

URI http://purl.obolibrary.org/obo/MS_1002741
Super-classes obo:MS_1002636c

noise arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1002742
Super-classes obo:MS_1000513c

sampled noise m/z arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1002743
Super-classes obo:MS_1000513c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000040c

sampled noise intensity arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1002744
Super-classes obo:MS_1000513c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1000131c

sampled noise baseline arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1002745
Super-classes obo:MS_1000513c

MS-Numpress linear prediction compression followed by zlib compressionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002746
Super-classes obo:MS_1000572c

MS-Numpress positive integer compression followed by zlib compressionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002747
Super-classes obo:MS_1000572c

MS-Numpress short logged float compression followed by zlib compressionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002748
Super-classes obo:MS_1000572c

Mascot:IntegratedSpectralLibrarySearchc # Classes

URI http://purl.obolibrary.org/obo/MS_1002749
Super-classes obo:MS_1002095c

NIST MSPepSearchc # Classes

URI http://purl.obolibrary.org/obo/MS_1002750
Super-classes obo:MS_1001456c

NIST MSP formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002751
Super-classes obo:MS_1001347c

database type spectral libraryc # Classes

URI http://purl.obolibrary.org/obo/MS_1002752
Super-classes obo:MS_1001073c

value between 0 and 1000 inclusivec # Classes

URI http://purl.obolibrary.org/obo/MS_1002753
Super-classes obo:MS_1002304c

MSPepSearch:scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002754
Super-classes obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002753c
http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

combined ms-ms + spectral library searchc # Classes

URI http://purl.obolibrary.org/obo/MS_1002755
Super-classes obo:MS_1001080c

iodoTMT quantitation analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1002756
Super-classes obo:MS_1002009c

glyco-TMT quantitation analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1002757
Super-classes obo:MS_1002009c

aminoxyTMT quantitation analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1002758
Super-classes obo:MS_1002009c

hydrazideTMT quantitation analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1002759
Super-classes obo:MS_1002009c

iTRAQH quantitation analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1002760
Super-classes obo:MS_1002009c

DiART quantitation analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1002761
Super-classes obo:MS_1002009c

DiLeu quantitation analysisc # Classes

URI http://purl.obolibrary.org/obo/MS_1002762
Super-classes obo:MS_1002009c

TMT reagent 127Nc # Classes

URI http://purl.obolibrary.org/obo/MS_1002763
Super-classes obo:MS_1002615c

TMT reagent 127Cc # Classes

URI http://purl.obolibrary.org/obo/MS_1002764
Super-classes obo:MS_1002615c

TMT reagent 128Nc # Classes

URI http://purl.obolibrary.org/obo/MS_1002765
Super-classes obo:MS_1002615c

TMT reagent 128Cc # Classes

URI http://purl.obolibrary.org/obo/MS_1002766
Super-classes obo:MS_1002615c

TMT reagent 129Nc # Classes

URI http://purl.obolibrary.org/obo/MS_1002767
Super-classes obo:MS_1002615c

TMT reagent 129Cc # Classes

URI http://purl.obolibrary.org/obo/MS_1002768
Super-classes obo:MS_1002615c

TMT reagent 130Nc # Classes

URI http://purl.obolibrary.org/obo/MS_1002769
Super-classes obo:MS_1002615c

TMT reagent 130Cc # Classes

URI http://purl.obolibrary.org/obo/MS_1002770
Super-classes obo:MS_1002615c

DiART reagentc # Classes

URI http://purl.obolibrary.org/obo/MS_1002771
Super-classes obo:MS_1002602c
Sub-classes obo:MS_1002777c
obo:MS_1002776c
obo:MS_1002775c
obo:MS_1002772c
obo:MS_1002773c
obo:MS_1002774c

DiART reagent 114c # Classes

URI http://purl.obolibrary.org/obo/MS_1002772
Super-classes obo:MS_1002771c

DiART reagent 115c # Classes

URI http://purl.obolibrary.org/obo/MS_1002773
Super-classes obo:MS_1002771c

DiART reagent 116c # Classes

URI http://purl.obolibrary.org/obo/MS_1002774
Super-classes obo:MS_1002771c

DiART reagent 117c # Classes

URI http://purl.obolibrary.org/obo/MS_1002775
Super-classes obo:MS_1002771c

DiART reagent 118c # Classes

URI http://purl.obolibrary.org/obo/MS_1002776
Super-classes obo:MS_1002771c

DiART reagent 119c # Classes

URI http://purl.obolibrary.org/obo/MS_1002777
Super-classes obo:MS_1002771c

DiLeu reagentc # Classes

URI http://purl.obolibrary.org/obo/MS_1002778
Super-classes obo:MS_1002602c
Sub-classes obo:MS_1002779c
obo:MS_1002780c
obo:MS_1002781c
obo:MS_1002782c

DiLeu reagent 115c # Classes

URI http://purl.obolibrary.org/obo/MS_1002779
Super-classes obo:MS_1002778c

DiLeu reagent 116c # Classes

URI http://purl.obolibrary.org/obo/MS_1002780
Super-classes obo:MS_1002778c

DiLeu reagent 117c # Classes

URI http://purl.obolibrary.org/obo/MS_1002781
Super-classes obo:MS_1002778c

DiLeu reagent 118c # Classes

URI http://purl.obolibrary.org/obo/MS_1002782
Super-classes obo:MS_1002778c

6550 iFunnel Q-TOF LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002783
Super-classes obo:MS_1000490c

6550A iFunnel Q-TOF LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002784
Super-classes obo:MS_1000490c

6520B Q-TOF LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002785
Super-classes obo:MS_1000490c

6530A Q-TOF LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002786
Super-classes obo:MS_1000490c

6530B Q-TOF LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002787
Super-classes obo:MS_1000490c

6538 Q-TOF LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002788
Super-classes obo:MS_1000490c

6540 Q-TOF LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002789
Super-classes obo:MS_1000490c

6542 Q-TOF LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002790
Super-classes obo:MS_1000490c

6545 Q-TOF LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002791
Super-classes obo:MS_1000490c

6560 Q-TOF LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002792
Super-classes obo:MS_1000490c

6570 Q-TOF LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002793
Super-classes obo:MS_1000490c

6120B Quadrupole LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002794
Super-classes obo:MS_1000490c

6150 Quadrupole LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002795
Super-classes obo:MS_1000490c

6224 Time-of-Flight LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002796
Super-classes obo:MS_1000490c

6230A Time-of-Flight LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002797
Super-classes obo:MS_1000490c

6230B Time-of-Flight LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002798
Super-classes obo:MS_1000490c

6430 Triple Quadrupole LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002799
Super-classes obo:MS_1000490c

6495A Triple Quadrupole LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002800
Super-classes obo:MS_1000490c

6495B Triple Quadrupole LC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002801
Super-classes obo:MS_1000490c

7000A Triple Quadrupole GC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002802
Super-classes obo:MS_1000490c

7000B Triple Quadrupole GC/MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002803
Super-classes obo:MS_1000490c

7800 Quadrupole ICP-MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002804
Super-classes obo:MS_1000490c

8800 Triple Quadrupole ICP-MSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002805
Super-classes obo:MS_1000490c

ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002806
Super-classes obo:MS_1000881c

positive mode adduct ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002807
Super-classes obo:MS_1000353c
Sub-classes obo:MS_1002820c

negative mode adduct ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002808
Super-classes obo:MS_1000353c
Sub-classes obo:MS_1002821c

adduct ion attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002809
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000353c
Sub-classes obo:MS_1002813c

adduct ion X m/zc # Classes

URI http://purl.obolibrary.org/obo/MS_1002810
Super-classes obo:MS_1003056c

adduct ion isotopec # Classes

URI http://purl.obolibrary.org/obo/MS_1002811
Super-classes obo:MS_1003056c

Regular expression for adduct ion formulac # Classes

URI http://purl.obolibrary.org/obo/MS_1002812
Super-classes obo:MS_1002479c

adduct ion formulac # Classes

URI http://purl.obolibrary.org/obo/MS_1002813
Super-classes obo:MS_1002809c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:MS_1002812c

volt-second per square centimeterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002814
Super-classes obo:UO_0000000c

inverse reduced ion mobilityc # Classes

URI http://purl.obolibrary.org/obo/MS_1002815
Super-classes obo:MS_1000455c
obo:MS_1002892c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1002814c

mean ion mobility arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1002816
Super-classes obo:MS_1002893c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000028c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000010c

Bruker TDF formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002817
Super-classes obo:MS_1000560c

Bruker TDF nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002818
Super-classes obo:MS_1000767c

Bruker TDF nativeID format, combined spectrac # Classes

URI http://purl.obolibrary.org/obo/MS_1002819
Super-classes obo:MS_1002646c

M+H ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002820
Super-classes obo:MS_1002807c

M-H ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002821
Super-classes obo:MS_1002808c

OpenMS file formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002822
Super-classes obo:MS_1001459c
Sub-classes obo:MS_1002825c
obo:MS_1002824c
obo:MS_1002823c

idXMLc # Classes

URI http://purl.obolibrary.org/obo/MS_1002823
Super-classes obo:MS_1002822c

featureXMLc # Classes

URI http://purl.obolibrary.org/obo/MS_1002824
Super-classes obo:MS_1002822c

consensusXMLc # Classes

URI http://purl.obolibrary.org/obo/MS_1002825
Super-classes obo:MS_1002822c

MetaMorpheusc # Classes

URI http://purl.obolibrary.org/obo/MS_1002826
Super-classes obo:MS_1001456c

MetaMorpheus:scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002827
Super-classes obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

MetaMorpheus:protein scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002828
Super-classes obo:MS_1002368c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

XCMS:intoc # Classes

URI http://purl.obolibrary.org/obo/MS_1002829
Super-classes obo:MS_1002735c

XCMS:intfc # Classes

URI http://purl.obolibrary.org/obo/MS_1002830
Super-classes obo:MS_1002735c

XCMS:maxoc # Classes

URI http://purl.obolibrary.org/obo/MS_1002831
Super-classes obo:MS_1002735c

XCMS:areac # Classes

URI http://purl.obolibrary.org/obo/MS_1002832
Super-classes obo:MS_1002735c

alternating polarity modec # Classes

URI http://purl.obolibrary.org/obo/MS_1002833
Super-classes obo:MS_1000857c

ProteomeDiscoverer:Delta Scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002834
Super-classes obo:MS_1001143c

LTQ Orbitrap Classicc # Classes

URI http://purl.obolibrary.org/obo/MS_1002835
Super-classes obo:MS_1000494c

iProX dataset identifierc # Classes

URI http://purl.obolibrary.org/obo/MS_1002836
Super-classes obo:MS_1000878c

iProX dataset URIc # Classes

URI http://purl.obolibrary.org/obo/MS_1002837
Super-classes obo:MS_1000878c

mzMLb formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002838
Super-classes obo:MS_1000560c

Conversion to mzMLbc # Classes

URI http://purl.obolibrary.org/obo/MS_1002839
Super-classes obo:MS_1000530c

external reference datac # Classes

URI http://purl.obolibrary.org/obo/MS_1002840
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_0000000c
Sub-classes obo:MS_1001923c
obo:MS_1002841c
obo:MS_1000878c
obo:MS_1002842c
obo:MS_1002843c

external HDF5 datasetc # Classes

URI http://purl.obolibrary.org/obo/MS_1002841
Super-classes obo:MS_1002840c

external offsetc # Classes

URI http://purl.obolibrary.org/obo/MS_1002842
Super-classes obo:MS_1002840c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000189c

external array lengthc # Classes

URI http://purl.obolibrary.org/obo/MS_1002843
Super-classes obo:MS_1002840c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000189c

Experiment additional parameterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002844
Super-classes obo:MS_1001458c
Sub-classes obo:MS_1002855c
obo:MS_1002861c
obo:MS_1002857c
obo:MS_1002854c
obo:MS_1002867c
obo:MS_1002868c
obo:MS_1002852c
obo:MS_1002853c
obo:MS_1002865c
obo:MS_1002858c
obo:MS_1002866c
obo:MS_1002862c
obo:MS_1002847c
obo:MS_1002863c
obo:MS_1002864c
obo:MS_1003087c
obo:MS_1002856c
obo:MS_1002845c

Associated file URIc # Classes

URI http://purl.obolibrary.org/obo/MS_1002845
Super-classes obo:MS_1002844c
Sub-classes obo:MS_1002848c
obo:MS_1002851c
obo:MS_1002846c
obo:MS_1002859c
obo:MS_1002849c
obo:MS_1002860c
obo:MS_1002850c

Associated raw file URIc # Classes

URI http://purl.obolibrary.org/obo/MS_1002846
Super-classes obo:MS_1002845c

ProteomeCentral dataset URIc # Classes

URI http://purl.obolibrary.org/obo/MS_1002847
Super-classes obo:MS_1002844c

Result file URIc # Classes

URI http://purl.obolibrary.org/obo/MS_1002848
Super-classes obo:MS_1002845c

Search engine output file URIc # Classes

URI http://purl.obolibrary.org/obo/MS_1002849
Super-classes obo:MS_1002845c

Peak list file URIc # Classes

URI http://purl.obolibrary.org/obo/MS_1002850
Super-classes obo:MS_1002845c

Other type file URIc # Classes

URI http://purl.obolibrary.org/obo/MS_1002851
Super-classes obo:MS_1002845c

Dataset FTP locationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002852
Super-classes obo:MS_1002844c

Dataset with no associated published manuscriptc # Classes

URI http://purl.obolibrary.org/obo/MS_1002853
Super-classes obo:MS_1002844c

Peer-reviewed datasetc # Classes

URI http://purl.obolibrary.org/obo/MS_1002854
Super-classes obo:MS_1002844c

Non peer-reviewed datasetc # Classes

URI http://purl.obolibrary.org/obo/MS_1002855
Super-classes obo:MS_1002844c

Supported dataset by repositoryc # Classes

URI http://purl.obolibrary.org/obo/MS_1002856
Super-classes obo:MS_1002844c

Unsupported dataset by repositoryc # Classes

URI http://purl.obolibrary.org/obo/MS_1002857
Super-classes obo:MS_1002844c

Dataset with its publication pendingc # Classes

URI http://purl.obolibrary.org/obo/MS_1002858
Super-classes obo:MS_1002844c

Additional associated raw file URIc # Classes

URI http://purl.obolibrary.org/obo/MS_1002859
Super-classes obo:MS_1002845c

Gel image file URIc # Classes

URI http://purl.obolibrary.org/obo/MS_1002860
Super-classes obo:MS_1002845c

Reprocessed complete datasetc # Classes

URI http://purl.obolibrary.org/obo/MS_1002861
Super-classes obo:MS_1002844c

Reprocessed subset datasetc # Classes

URI http://purl.obolibrary.org/obo/MS_1002862
Super-classes obo:MS_1002844c

Data derived from previous datasetc # Classes

URI http://purl.obolibrary.org/obo/MS_1002863
Super-classes obo:MS_1002844c

No PTMs are included in the datasetc # Classes

URI http://purl.obolibrary.org/obo/MS_1002864
Super-classes obo:MS_1002844c

Accepted manuscriptc # Classes

URI http://purl.obolibrary.org/obo/MS_1002865
Super-classes obo:MS_1002844c

Referencec # Classes

URI http://purl.obolibrary.org/obo/MS_1002866
Super-classes obo:MS_1002844c

Experimental information has been refined since this experiment was originally made publicly availablec # Classes

URI http://purl.obolibrary.org/obo/MS_1002867
Super-classes obo:MS_1002844c

Original datac # Classes

URI http://purl.obolibrary.org/obo/MS_1002868
Super-classes obo:MS_1002844c

mzRc # Classes

URI http://purl.obolibrary.org/obo/MS_1002869
Super-classes obo:MS_1001457c
obo:MS_1001456c

MSnbasec # Classes

URI http://purl.obolibrary.org/obo/MS_1002870
Super-classes obo:MS_1001456c
obo:MS_1001457c

CAMERAc # Classes

URI http://purl.obolibrary.org/obo/MS_1002871
Super-classes obo:MS_1001456c
obo:MS_1001457c

Panorama Public dataset identifierc # Classes

URI http://purl.obolibrary.org/obo/MS_1002872
Super-classes obo:MS_1000878c

Panorama Public dataset URIc # Classes

URI http://purl.obolibrary.org/obo/MS_1002873
Super-classes obo:MS_1000878c

TSQ Altisc # Classes

URI http://purl.obolibrary.org/obo/MS_1002874
Super-classes obo:MS_1000494c

TSQ Quantisc # Classes

URI http://purl.obolibrary.org/obo/MS_1002875
Super-classes obo:MS_1000494c

TSQ 9000c # Classes

URI http://purl.obolibrary.org/obo/MS_1002876
Super-classes obo:MS_1000494c

Q Exactive HF-Xc # Classes

URI http://purl.obolibrary.org/obo/MS_1002877
Super-classes obo:MS_1000494c

small molecule analysis softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1002878
Super-classes obo:MS_1001456c
Sub-classes obo:MS_1002879c
obo:MS_1002964c
obo:MS_1003082c
obo:MS_1002880c
obo:MS_1002881c

Progenesis QIc # Classes

URI http://purl.obolibrary.org/obo/MS_1002879
Super-classes obo:MS_1002878c

Compound Discovererc # Classes

URI http://purl.obolibrary.org/obo/MS_1002880
Super-classes obo:MS_1002878c

MyCompoundIDc # Classes

URI http://purl.obolibrary.org/obo/MS_1002881
Super-classes obo:MS_1002878c

study variable average functionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002882
Super-classes obo:MS_1001184c
Sub-classes obo:MS_1002883c
obo:MS_1002962c

medianc # Classes

URI http://purl.obolibrary.org/obo/MS_1002883
Super-classes obo:MS_1002882c

study variable variation functionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002884
Super-classes obo:MS_1001184c
Sub-classes obo:MS_1002885c
obo:MS_1002963c

standard errorc # Classes

URI http://purl.obolibrary.org/obo/MS_1002885
Super-classes obo:MS_1002884c

small molecule quantification datatypec # Classes

URI http://purl.obolibrary.org/obo/MS_1002886
Super-classes obo:MS_1001805c
Sub-classes obo:MS_1002887c

Progenesis QI normalised abundancec # Classes

URI http://purl.obolibrary.org/obo/MS_1002887
Super-classes obo:MS_1002886c

small molecule confidence measurec # Classes

URI http://purl.obolibrary.org/obo/MS_1002888
Super-classes obo:MS_1002694c
Sub-classes obo:MS_1002889c
obo:MS_1002890c
obo:MS_1002891c

Progenesis MetaScope scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002889
Super-classes obo:MS_1002888c

fragmentation scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002890
Super-classes obo:MS_1002888c

isotopic fit scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002891
Super-classes obo:MS_1002888c

ion mobility attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002892
Super-classes obo:MS_1000503c
obo:MS_1002345c
Sub-classes obo:MS_1002815c
obo:MS_1001581c
obo:MS_1002476c

ion mobility arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1002893
Super-classes obo:MS_1000513c
Sub-classes obo:MS_1003006c
obo:MS_1002477c
obo:MS_1003008c
obo:MS_1003007c
obo:MS_1002816c

InChIKeyc # Classes

URI http://purl.obolibrary.org/obo/MS_1002894
Super-classes obo:MS_1001405c

small molecule identification attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002895
Super-classes obo:MS_1002694c
Sub-classes obo:MS_1003032c
obo:MS_1002896c
obo:MS_1002955c

compound identification confidence levelc # Classes

URI http://purl.obolibrary.org/obo/MS_1002896
Super-classes obo:MS_1002895c

isotopomer peakc # Classes

URI http://purl.obolibrary.org/obo/MS_1002897
Description

This term was obsoleted because it was replaced by the more exact terms MS:1002956 'isotopic ion MS peak', MS:1002957 'isotopomer MS peak' and MS:1002958 'isotopologue MS peak' instead.
Super-classes obo:MS_1000231c

Shimadzu Biotech QTOF nativeID formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002898
Super-classes obo:MS_1000767c

msalign formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002899
Super-classes obo:MS_1000560c

feature formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002900
Super-classes obo:MS_1000560c

TopPICc # Classes

URI http://purl.obolibrary.org/obo/MS_1002901
Super-classes obo:MS_1001456c

TopFDc # Classes

URI http://purl.obolibrary.org/obo/MS_1002902
Super-classes obo:MS_1001456c

TopMGc # Classes

URI http://purl.obolibrary.org/obo/MS_1002903
Super-classes obo:MS_1001456c

proteoform-level identification attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1002904
Super-classes obo:MS_1002694c
Sub-classes obo:MS_1002905c

proteoform-level identification statisticc # Classes

URI http://purl.obolibrary.org/obo/MS_1002905
Super-classes obo:MS_1002904c
Sub-classes obo:MS_1002906c
obo:MS_1002908c
obo:MS_1002907c

search engine specific score for proteoformsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002906
Super-classes obo:MS_1002905c
Sub-classes obo:MS_1002930c
obo:MS_1002952c

proteoform-level global FDRc # Classes

URI http://purl.obolibrary.org/obo/MS_1002907
Super-classes obo:MS_1002905c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c

proteoform-level local FDRc # Classes

URI http://purl.obolibrary.org/obo/MS_1002908
Super-classes obo:MS_1002905c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c
Sub-classes obo:MS_1002952c
obo:MS_1002930c

proteoform-level statistical thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002909
Super-classes obo:MS_1002573c
Sub-classes obo:MS_1002910c
obo:MS_1002911c

proteoform-level global FDR thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002910
Super-classes obo:MS_1002909c

proteoform-level local FDR thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002911
Super-classes obo:MS_1002909c

TopPIC input parameterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002912
Super-classes obo:MS_1001302c
Sub-classes obo:MS_1002914c
obo:MS_1002927c
obo:MS_1002915c
obo:MS_1002920c
obo:MS_1002925c
obo:MS_1002913c
obo:MS_1002917c
obo:MS_1002921c
obo:MS_1002916c
obo:MS_1002918c
obo:MS_1002919c
obo:MS_1002926c
obo:MS_1002924c
obo:MS_1002923c
obo:MS_1002922c

TopPIC:fixed modificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002913
Super-classes obo:MS_1002912c

TopPIC:N-term formc # Classes

URI http://purl.obolibrary.org/obo/MS_1002914
Super-classes obo:MS_1002912c

TopPIC:error tolerancec # Classes

URI http://purl.obolibrary.org/obo/MS_1002915
Super-classes obo:MS_1002912c

TopPIC:max shiftc # Classes

URI http://purl.obolibrary.org/obo/MS_1002916
Super-classes obo:MS_1002912c

TopPIC:min shiftc # Classes

URI http://purl.obolibrary.org/obo/MS_1002917
Super-classes obo:MS_1002912c

TopPIC:shift numc # Classes

URI http://purl.obolibrary.org/obo/MS_1002918
Super-classes obo:MS_1002912c

TopPIC:spectral cutoff typec # Classes

URI http://purl.obolibrary.org/obo/MS_1002919
Super-classes obo:MS_1002912c

TopPIC:spectral cutoff valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002920
Super-classes obo:MS_1002912c

TopPIC:proteoform-level cutoff typec # Classes

URI http://purl.obolibrary.org/obo/MS_1002921
Super-classes obo:MS_1002912c

TopPIC:proteoform-level cutoff valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002922
Super-classes obo:MS_1002912c

TopPIC:generating functionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002923
Super-classes obo:MS_1002912c

TopPIC:combined spectrum numberc # Classes

URI http://purl.obolibrary.org/obo/MS_1002924
Super-classes obo:MS_1002912c

TopPIC:mod filec # Classes

URI http://purl.obolibrary.org/obo/MS_1002925
Super-classes obo:MS_1002912c

TopPIC:thread numberc # Classes

URI http://purl.obolibrary.org/obo/MS_1002926
Super-classes obo:MS_1002912c

TopPIC:use TopFD featurec # Classes

URI http://purl.obolibrary.org/obo/MS_1002927
Super-classes obo:MS_1002912c

TopPIC:spectral E-valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002928
Super-classes obo:MS_1001143c
obo:MS_1002353c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002109c

TopPIC:spectral FDRc # Classes

URI http://purl.obolibrary.org/obo/MS_1002929
Super-classes obo:MS_1001143c
obo:MS_1002351c

TopPIC:proteoform-level FDRc # Classes

URI http://purl.obolibrary.org/obo/MS_1002930
Super-classes obo:MS_1002906c
obo:MS_1002908c

TopPIC:spectral p-valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002931
Super-classes obo:MS_1001143c
obo:MS_1002352c

TopPIC:MIScorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002932
Super-classes obo:MS_1001968c

TopPIC:MIScore thresholdc # Classes

URI http://purl.obolibrary.org/obo/MS_1002933
Super-classes obo:MS_1002555c

TopMG input parameterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002934
Super-classes obo:MS_1001302c
Sub-classes obo:MS_1002935c
obo:MS_1002943c
obo:MS_1002942c
obo:MS_1002936c
obo:MS_1002949c
obo:MS_1002938c
obo:MS_1002947c
obo:MS_1002944c
obo:MS_1002946c
obo:MS_1002937c
obo:MS_1002945c
obo:MS_1002939c
obo:MS_1002940c
obo:MS_1002941c
obo:MS_1002948c

TopMG:fixed modificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1002935
Super-classes obo:MS_1002934c

TopMG:N-term formc # Classes

URI http://purl.obolibrary.org/obo/MS_1002936
Super-classes obo:MS_1002934c

TopMG:error tolerancec # Classes

URI http://purl.obolibrary.org/obo/MS_1002937
Super-classes obo:MS_1002934c

TopMG:max shiftc # Classes

URI http://purl.obolibrary.org/obo/MS_1002938
Super-classes obo:MS_1002934c

TopMG:spectral cutoff typec # Classes

URI http://purl.obolibrary.org/obo/MS_1002939
Super-classes obo:MS_1002934c

TopMG:spectral cutoff valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002940
Super-classes obo:MS_1002934c

TopMG:proteoform-level cutoff typec # Classes

URI http://purl.obolibrary.org/obo/MS_1002941
Super-classes obo:MS_1002934c

TopMG:proteoform-level cutoff valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002942
Super-classes obo:MS_1002934c

TopMG:mod filec # Classes

URI http://purl.obolibrary.org/obo/MS_1002943
Super-classes obo:MS_1002934c

TopMG:thread numberc # Classes

URI http://purl.obolibrary.org/obo/MS_1002944
Super-classes obo:MS_1002934c

TopMG:use TopFD featurec # Classes

URI http://purl.obolibrary.org/obo/MS_1002945
Super-classes obo:MS_1002934c

TopMG:proteoform graph gap sizec # Classes

URI http://purl.obolibrary.org/obo/MS_1002946
Super-classes obo:MS_1002934c

TopMG:variable PTM numberc # Classes

URI http://purl.obolibrary.org/obo/MS_1002947
Super-classes obo:MS_1002934c

TopMG:variable PTM number in proteoform graph gapc # Classes

URI http://purl.obolibrary.org/obo/MS_1002948
Super-classes obo:MS_1002934c

TopMG:use ASF-DIAGONALc # Classes

URI http://purl.obolibrary.org/obo/MS_1002949
Super-classes obo:MS_1002934c

TopMG:spectral E-valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002950
Super-classes obo:MS_1001143c
obo:MS_1002353c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002109c

TopMG:spectral FDRc # Classes

URI http://purl.obolibrary.org/obo/MS_1002951
Super-classes obo:MS_1001143c
obo:MS_1002351c

TopMG:proteoform-level FDRc # Classes

URI http://purl.obolibrary.org/obo/MS_1002952
Super-classes obo:MS_1002908c
obo:MS_1002906c

TopMG:spectral p-valuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002953
Super-classes obo:MS_1002352c
obo:MS_1001143c

collisional cross sectional areac # Classes

URI http://purl.obolibrary.org/obo/MS_1002954
Super-classes obo:MS_1000861c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000324c

hr-ms compound identification confidence levelc # Classes

URI http://purl.obolibrary.org/obo/MS_1002955
Super-classes obo:MS_1002895c

isotopic ion MS peakc # Classes

URI http://purl.obolibrary.org/obo/MS_1002956
Super-classes obo:MS_1000231c
Sub-classes obo:MS_1002957c
obo:MS_1002958c

isotopomer MS peakc # Classes

URI http://purl.obolibrary.org/obo/MS_1002957
Super-classes obo:MS_1002956c

isotopologue MS peakc # Classes

URI http://purl.obolibrary.org/obo/MS_1002958
Super-classes obo:MS_1002956c

isomerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002959
Super-classes obo:MS_1000859c
Sub-classes obo:MS_1002961c
obo:MS_1002960c

isotopomerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002960
Super-classes obo:MS_1002959c

isotopologuec # Classes

URI http://purl.obolibrary.org/obo/MS_1002961
Super-classes obo:MS_1002959c

meanc # Classes

URI http://purl.obolibrary.org/obo/MS_1002962
Super-classes obo:MS_1002882c

variation coefficientc # Classes

URI http://purl.obolibrary.org/obo/MS_1002963
Super-classes obo:MS_1002884c

lipidomics analysis softwarec # Classes

URI http://purl.obolibrary.org/obo/MS_1002964
Super-classes obo:MS_1002878c
Sub-classes obo:MS_1002976c
obo:MS_1002969c
obo:MS_1002974c
obo:MS_1002979c
obo:MS_1003010c
obo:MS_1002972c
obo:MS_1002971c
obo:MS_1002978c
obo:MS_1002977c
obo:MS_1002975c
obo:MS_1002980c
obo:MS_1002965c
obo:MS_1002970c
obo:MS_1002967c
obo:MS_1002973c
obo:MS_1002968c

Lipid Data Analyzerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002965
Super-classes obo:MS_1002964c
obo:MS_1001457c

chrom formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002966
Super-classes obo:MS_1000560c

LipidHunterc # Classes

URI http://purl.obolibrary.org/obo/MS_1002967
Super-classes obo:MS_1002964c
obo:MS_1001457c

LipidXplorerc # Classes

URI http://purl.obolibrary.org/obo/MS_1002968
Super-classes obo:MS_1001457c
obo:MS_1002964c

LipidMatchc # Classes

URI http://purl.obolibrary.org/obo/MS_1002969
Super-classes obo:MS_1002964c
obo:MS_1001457c

Greazyc # Classes

URI http://purl.obolibrary.org/obo/MS_1002970
Super-classes obo:MS_1002964c
obo:MS_1001457c

LipidBlastc # Classes

URI http://purl.obolibrary.org/obo/MS_1002971
Super-classes obo:MS_1002964c
obo:MS_1001457c

Lipid-Proc # Classes

URI http://purl.obolibrary.org/obo/MS_1002972
Super-classes obo:MS_1002964c
obo:MS_1001457c

LipidFinderc # Classes

URI http://purl.obolibrary.org/obo/MS_1002973
Super-classes obo:MS_1002964c
obo:MS_1001457c

LipiDexc # Classes

URI http://purl.obolibrary.org/obo/MS_1002974
Super-classes obo:MS_1002964c
obo:MS_1001457c

LIQUIDc # Classes

URI http://purl.obolibrary.org/obo/MS_1002975
Super-classes obo:MS_1002964c
obo:MS_1001457c

ALEXc # Classes

URI http://purl.obolibrary.org/obo/MS_1002976
Super-classes obo:MS_1002964c
obo:MS_1001457c

ALEX123c # Classes

URI http://purl.obolibrary.org/obo/MS_1002977
Super-classes obo:MS_1002964c
obo:MS_1001457c

LIMSAc # Classes

URI http://purl.obolibrary.org/obo/MS_1002978
Super-classes obo:MS_1002964c
obo:MS_1001457c

LOBSTAHSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002979
Super-classes obo:MS_1002964c
obo:MS_1001457c

LipidQAc # Classes

URI http://purl.obolibrary.org/obo/MS_1002980
Super-classes obo:MS_1002964c
obo:MS_1001457c

Prolinec # Classes

URI http://purl.obolibrary.org/obo/MS_1002981
Super-classes obo:MS_1001456c

PepNovoc # Classes

URI http://purl.obolibrary.org/obo/MS_1002982
Super-classes obo:MS_1001456c

pNovoc # Classes

URI http://purl.obolibrary.org/obo/MS_1002983
Super-classes obo:MS_1001456c

Novorc # Classes

URI http://purl.obolibrary.org/obo/MS_1002984
Super-classes obo:MS_1001456c

in-gel digestionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002985
Super-classes obo:MS_1000831c

in-solution digestionc # Classes

URI http://purl.obolibrary.org/obo/MS_1002986
Super-classes obo:MS_1000831c

IdentiPyc # Classes

URI http://purl.obolibrary.org/obo/MS_1002987
Super-classes obo:MS_1001456c

IdentiPy:RHNSc # Classes

URI http://purl.obolibrary.org/obo/MS_1002988
Super-classes obo:MS_1001153c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

IdentiPy:hyperscorec # Classes

URI http://purl.obolibrary.org/obo/MS_1002989
Super-classes obo:MS_1001153c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

ms_deisotopec # Classes

URI http://purl.obolibrary.org/obo/MS_1002990
Super-classes obo:MS_1001457c

python-psimsc # Classes

URI http://purl.obolibrary.org/obo/MS_1002991
Super-classes obo:MS_1002333c

Andromeda:PEPc # Classes

URI http://purl.obolibrary.org/obo/MS_1002995
Super-classes obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c
http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

Andromeda:apl file formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1002996
Super-classes obo:MS_1000560c

ProteomeXchange dataset identifier reanalysis numberc # Classes

URI http://purl.obolibrary.org/obo/MS_1002997
Super-classes obo:MS_1000878c

LCMS-9030c # Classes

URI http://purl.obolibrary.org/obo/MS_1002998
Super-classes obo:MS_1000603c

LCMS-8060c # Classes

URI http://purl.obolibrary.org/obo/MS_1002999
Super-classes obo:MS_1000603c

LCMS-8050c # Classes

URI http://purl.obolibrary.org/obo/MS_1003000
Super-classes obo:MS_1000603c

LCMS-8045c # Classes

URI http://purl.obolibrary.org/obo/MS_1003001
Super-classes obo:MS_1000603c

LCMS-8040c # Classes

URI http://purl.obolibrary.org/obo/MS_1003002
Super-classes obo:MS_1000603c

LCMS-2020c # Classes

URI http://purl.obolibrary.org/obo/MS_1003003
Super-classes obo:MS_1000603c

maXis IIc # Classes

URI http://purl.obolibrary.org/obo/MS_1003004
Super-classes obo:MS_1001547c

timsTOF Proc # Classes

URI http://purl.obolibrary.org/obo/MS_1003005
Super-classes obo:MS_1000122c

mean inverse reduced ion mobility arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1003006
Super-classes obo:MS_1002893c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1002814c

raw ion mobility arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1003007
Super-classes obo:MS_1002893c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000028c
http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000010c

raw inverse reduced ion mobility arrayc # Classes

URI http://purl.obolibrary.org/obo/MS_1003008
Super-classes obo:MS_1002893c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:MS_1002814c

Shimadzu Biotech LCD formatc # Classes

URI http://purl.obolibrary.org/obo/MS_1003009
Super-classes obo:MS_1000560c

LPPtigerc # Classes

URI http://purl.obolibrary.org/obo/MS_1003010
Super-classes obo:MS_1002964c
obo:MS_1001457c

pFindc # Classes

URI http://purl.obolibrary.org/obo/MS_1003011
Super-classes obo:MS_1001456c

KSDP scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1003012
Super-classes obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

i3tmsc # Classes

URI http://purl.obolibrary.org/obo/MS_1003013
Super-classes obo:MS_1001456c

MSFraggerc # Classes

URI http://purl.obolibrary.org/obo/MS_1003014
Super-classes obo:MS_1001456c

razor peptidec # Classes

URI http://purl.obolibrary.org/obo/MS_1003015
Super-classes obo:MS_1000860c

ProteinProphet:peptide weightc # Classes

URI http://purl.obolibrary.org/obo/MS_1003016
Super-classes obo:MS_1001153c
obo:MS_1002490c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c
http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

ProteinProphet:peptide group weightc # Classes

URI http://purl.obolibrary.org/obo/MS_1003017
Super-classes obo:MS_1001153c
obo:MS_1002490c
Restrictions http://purl.obolibrary.org/obo/ms#has_domainop some obo:MS_1002305c
http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

Philosopherc # Classes

URI http://purl.obolibrary.org/obo/MS_1003018
Super-classes obo:MS_1001456c

pressure chromatogramc # Classes

URI http://purl.obolibrary.org/obo/MS_1003019
Super-classes obo:MS_1000626c

flow rate chromatogramc # Classes

URI http://purl.obolibrary.org/obo/MS_1003020
Super-classes obo:MS_1000626c

Fixed modificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1003021
Super-classes obo:MS_1003026c
obo:MS_1001055c

Variable modificationc # Classes

URI http://purl.obolibrary.org/obo/MS_1003022
Super-classes obo:MS_1003026c
obo:MS_1001055c

OpenPepXLc # Classes

URI http://purl.obolibrary.org/obo/MS_1003023
Super-classes obo:MS_1000752c

OpenPepXL:scorec # Classes

URI http://purl.obolibrary.org/obo/MS_1003024
Super-classes obo:MS_1001153c
obo:MS_1001143c
Restrictions http://purl.obolibrary.org/obo/ms#has_orderop some obo:MS_1002108c

named elementc # Classes

URI http://purl.obolibrary.org/obo/MS_1003025
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_0000000c
Sub-classes obo:MS_1003026c
obo:MS_1003027c

named element in mzIdentMLc # Classes

URI http://purl.obolibrary.org/obo/MS_1003026
Super-classes obo:MS_1003025c
Sub-classes obo:MS_1003022c
obo:MS_1003021c

named element in mzMLc # Classes

URI http://purl.obolibrary.org/obo/MS_1003027
Super-classes obo:MS_1003025c

Orbitrap Exploris 480c # Classes

URI http://purl.obolibrary.org/obo/MS_1003028
Super-classes obo:MS_1000494c

Orbitrap Eclipsec # Classes

URI http://purl.obolibrary.org/obo/MS_1003029
Super-classes obo:MS_1000494c

Mascot:MinNumSigUniqueSeqsc # Classes

URI http://purl.obolibrary.org/obo/MS_1003030
Super-classes obo:MS_1002095c

CPTAC accession numberc # Classes

URI http://purl.obolibrary.org/obo/MS_1003031
Super-classes obo:MS_1000878c

compound identification confidence code in MS-DIALc # Classes

URI http://purl.obolibrary.org/obo/MS_1003032
Super-classes obo:MS_1002895c

molecular entity attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1003033
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000881c
Sub-classes obo:MS_1000864c

atomc # Classes

URI http://purl.obolibrary.org/obo/MS_1003034
Super-classes obo:MS_1000881c

small moleculec # Classes

URI http://purl.obolibrary.org/obo/MS_1003035
Super-classes obo:MS_1000859c
Sub-classes obo:MS_1003040c
obo:MS_1003036c
obo:MS_1003038c
obo:MS_1003039c
obo:MS_1003037c

metabolitec # Classes

URI http://purl.obolibrary.org/obo/MS_1003036
Super-classes obo:MS_1003035c

ribonucleotidec # Classes

URI http://purl.obolibrary.org/obo/MS_1003037
Super-classes obo:MS_1003035c

deoxyribonucleotidec # Classes

URI http://purl.obolibrary.org/obo/MS_1003038
Super-classes obo:MS_1003035c

amino acidc # Classes

URI http://purl.obolibrary.org/obo/MS_1003039
Super-classes obo:MS_1003035c

monosaccharidec # Classes

URI http://purl.obolibrary.org/obo/MS_1003040
Super-classes obo:MS_1003035c

nucleic acidc # Classes

URI http://purl.obolibrary.org/obo/MS_1003041
Super-classes obo:MS_1000859c

polysaccharidec # Classes

URI http://purl.obolibrary.org/obo/MS_1003042
Super-classes obo:MS_1000859c

number of residuesc # Classes

URI http://purl.obolibrary.org/obo/MS_1003043
Super-classes obo:MS_1000887c

number of missed cleavagesc # Classes

URI http://purl.obolibrary.org/obo/MS_1003044
Super-classes obo:MS_1000887c

peptide-to-protein mappingc # Classes

URI http://purl.obolibrary.org/obo/MS_1003045
Super-classes obo:MS_1000887c
Sub-classes obo:MS_1003046c

peptide-to-protein mapping attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1003046
Super-classes obo:MS_1003045c
Sub-classes obo:MS_1001112c
obo:MS_1003048c
obo:MS_1000885c
obo:MS_1003047c
obo:MS_1001113c

protein sequence offsetc # Classes

URI http://purl.obolibrary.org/obo/MS_1003047
Super-classes obo:MS_1003046c

number of enzymatic terminic # Classes

URI http://purl.obolibrary.org/obo/MS_1003048
Super-classes obo:MS_1003046c

peptidoformc # Classes

URI http://purl.obolibrary.org/obo/MS_1003049
Super-classes obo:MS_1000860c
Sub-classes obo:MS_1003051c

peptidoform attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1003050
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1003049c
Sub-classes obo:MS_1000890c
obo:MS_1000894c
obo:MS_1000893c
obo:MS_1000888c
obo:MS_1000889c

peptidoform ionc # Classes

URI http://purl.obolibrary.org/obo/MS_1003051
Super-classes obo:MS_1003049c

peptidoform ion propertyc # Classes

URI http://purl.obolibrary.org/obo/MS_1003052
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1003051c
Sub-classes obo:MS_1003054c
obo:MS_1003053c

theoretical monoisotopic m/zc # Classes

URI http://purl.obolibrary.org/obo/MS_1003053
Super-classes obo:MS_1003052c

theoretical average m/zc # Classes

URI http://purl.obolibrary.org/obo/MS_1003054
Super-classes obo:MS_1003052c

adductc # Classes

URI http://purl.obolibrary.org/obo/MS_1003055
Super-classes obo:MS_1000859c
Sub-classes obo:MS_1000353c

adduct ion propertyc # Classes

URI http://purl.obolibrary.org/obo/MS_1003056
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000353c
Sub-classes obo:MS_1002810c
obo:MS_1002811c

scan numberc # Classes

URI http://purl.obolibrary.org/obo/MS_1003057
Super-classes obo:MS_1000503c

spectrum propertyc # Classes

URI http://purl.obolibrary.org/obo/MS_1003058
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1000442c
Sub-classes obo:MS_1000285c
obo:MS_1000798c
obo:MS_1000504c
obo:MS_1000797c
obo:MS_1000527c
obo:MS_1000619c
obo:MS_1003060c
obo:MS_1003059c
obo:MS_1000618c
obo:MS_1000505c
obo:MS_1000528c

number of peaksc # Classes

URI http://purl.obolibrary.org/obo/MS_1003059
Super-classes obo:MS_1003058c

number of data pointsc # Classes

URI http://purl.obolibrary.org/obo/MS_1003060
Super-classes obo:MS_1003058c

spectrum namec # Classes

URI http://purl.obolibrary.org/obo/MS_1003061
Super-classes obo:MS_1000499c

spectrum indexc # Classes

URI http://purl.obolibrary.org/obo/MS_1003062
Super-classes obo:MS_1000499c

universal spectrum identifierc # Classes

URI http://purl.obolibrary.org/obo/MS_1003063
Super-classes obo:MS_1000499c

spectrum aggregation attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1003064
Super-classes obo:MS_1000499c
Sub-classes obo:MS_1003065c
obo:MS_1003070c
obo:MS_1003069c

spectrum aggregation typec # Classes

URI http://purl.obolibrary.org/obo/MS_1003065
Super-classes obo:MS_1003064c
Sub-classes obo:MS_1003066c
obo:MS_1003067c
obo:MS_1003068c

singleton spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1003066
Super-classes obo:MS_1003065c

consensus spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1003067
Super-classes obo:MS_1003065c

best replicate spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1003068
Super-classes obo:MS_1003065c

number of replicate spectra availablec # Classes

URI http://purl.obolibrary.org/obo/MS_1003069
Super-classes obo:MS_1003064c

number of replicate spectra usedc # Classes

URI http://purl.obolibrary.org/obo/MS_1003070
Super-classes obo:MS_1003064c

spectrum origin attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1003071
Super-classes obo:MS_1000499c
Sub-classes obo:MS_1003072c

spectrum origin typec # Classes

URI http://purl.obolibrary.org/obo/MS_1003072
Super-classes obo:MS_1003071c
Sub-classes obo:MS_1003075c
obo:MS_1003074c
obo:MS_1003073c

observed spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1003073
Super-classes obo:MS_1003072c

predicted spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1003074
Super-classes obo:MS_1003072c

demultiplexed spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1003075
Super-classes obo:MS_1003072c

uninterpreted spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1003076
Super-classes obo:MS_1000442c

interpreted spectrumc # Classes

URI http://purl.obolibrary.org/obo/MS_1003077
Super-classes obo:MS_1000442c

interpreted spectrum attributec # Classes

URI http://purl.obolibrary.org/obo/MS_1003078
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_1003077c
Sub-classes obo:MS_1003079c
obo:MS_1003080c

total unassigned intensity fractionc # Classes

URI http://purl.obolibrary.org/obo/MS_1003079
Super-classes obo:MS_1003078c

top 20 peak unassigned intensity fractionc # Classes

URI http://purl.obolibrary.org/obo/MS_1003080
Super-classes obo:MS_1003078c

unidentified modification monoisotopic mass deltac # Classes

URI http://purl.obolibrary.org/obo/MS_1003081
Super-classes obo:MS_1001471c
Restrictions http://purl.obolibrary.org/obo/ms#has_unitsop some obo:UO_0000221c

MS-DIALc # Classes

URI http://purl.obolibrary.org/obo/MS_1003082
Super-classes obo:MS_1002878c
obo:MS_1001457c

raw data filec # Classes

URI http://purl.obolibrary.org/obo/MS_1003083
Super-classes obo:MS_1000577c

processed data filec # Classes

URI http://purl.obolibrary.org/obo/MS_1003084
Super-classes obo:MS_1000577c

previous MSn-1 scan precursor intensityc # Classes

URI http://purl.obolibrary.org/obo/MS_1003085
Super-classes obo:MS_1001141c
obo:MS_1000499c

precursor apex intensityc # Classes

URI http://purl.obolibrary.org/obo/MS_1003086
Super-classes obo:MS_1000499c
obo:MS_1001141c

supported by repository but incomplete data and/or metadatac # Classes

URI http://purl.obolibrary.org/obo/MS_1003087
Super-classes obo:MS_1002844c

truncation and zlib compressionc # Classes

URI http://purl.obolibrary.org/obo/MS_1003088
Super-classes obo:MS_1000572c

truncation, delta prediction and zlib compressionc # Classes

URI http://purl.obolibrary.org/obo/MS_1003089
Super-classes obo:MS_1000572c

truncation, linear prediction and zlib compressionc # Classes

URI http://purl.obolibrary.org/obo/MS_1003090
Super-classes obo:MS_1000572c

PEFF CV termc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0000001
Restrictions http://purl.obolibrary.org/obo/ms#part_ofop some obo:MS_0000000c
Sub-classes obo:PEFF_0000002c
obo:PEFF_0000003c

PEFF file header section termc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0000002
Super-classes obo:PEFF_0000001c
Sub-classes obo:PEFF_0000010c
obo:PEFF_0000017c
obo:PEFF_0000016c
obo:PEFF_0000014c
obo:PEFF_0000013c
obo:PEFF_0000015c
obo:PEFF_0000009c
obo:PEFF_0000012c
obo:PEFF_0000018c
obo:PEFF_0000008c
obo:PEFF_0000024c
obo:PEFF_0000022c
obo:PEFF_0000019c
obo:PEFF_0000021c
obo:PEFF_0000023c
obo:PEFF_0000020c
obo:PEFF_0000011c

PEFF file sequence entry termc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0000003
Super-classes obo:PEFF_0000001c
Sub-classes obo:PEFF_0001007c
obo:PEFF_0001014c
obo:PEFF_0001017c
obo:PEFF_0001008c
obo:PEFF_0001030c
obo:PEFF_0001028c
obo:PEFF_0001032c
obo:PEFF_0001013c
obo:PEFF_0001031c
obo:PEFF_0001016c
obo:PEFF_0001009c
obo:PEFF_0001018c
obo:PEFF_0001001c
obo:PEFF_0001019c
obo:PEFF_0001025c
obo:PEFF_0001023c
obo:PEFF_0001029c
obo:PEFF_0001002c
obo:PEFF_0001003c
obo:PEFF_0001006c
obo:PEFF_0001033c
obo:PEFF_0001004c
obo:PEFF_0001027c
obo:PEFF_0001024c
obo:PEFF_0001015c
obo:PEFF_0001012c
obo:PEFF_0001005c
obo:PEFF_0001026c
obo:PEFF_0001011c
obo:PEFF_0001010c

DbNamec # Classes

URI http://purl.obolibrary.org/obo/PEFF_0000008
Super-classes obo:PEFF_0000002c

Prefixc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0000009
Super-classes obo:PEFF_0000002c

DbDescriptionc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0000010
Super-classes obo:PEFF_0000002c

Decoyc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0000011
Super-classes obo:PEFF_0000002c

DbSourcec # Classes

URI http://purl.obolibrary.org/obo/PEFF_0000012
Super-classes obo:PEFF_0000002c

DbVersionc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0000013
Super-classes obo:PEFF_0000002c

DbDatec # Classes

URI http://purl.obolibrary.org/obo/PEFF_0000014
Description

This term was obsoleted.
Super-classes obo:PEFF_0000002c

NumberOfEntriesc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0000015
Super-classes obo:PEFF_0000002c

Conversionc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0000016
Super-classes obo:PEFF_0000002c

SequenceTypec # Classes

URI http://purl.obolibrary.org/obo/PEFF_0000017
Super-classes obo:PEFF_0000002c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:PEFF_1002002c

SpecificKeyc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0000018
Super-classes obo:PEFF_0000002c

SpecificValuec # Classes

URI http://purl.obolibrary.org/obo/PEFF_0000019
Super-classes obo:PEFF_0000002c

DatabaseDescriptionc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0000020
Super-classes obo:PEFF_0000002c

GeneralCommentc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0000021
Super-classes obo:PEFF_0000002c

ProteoformDbc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0000022
Super-classes obo:PEFF_0000002c

OptionalTagDefc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0000023
Super-classes obo:PEFF_0000002c

HasAnnotationIdentifiersc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0000024
Super-classes obo:PEFF_0000002c

DbUniqueIdc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001001
Description

This term was made obsolete because decided in Heidelberg 2018-04 that this is redundant.
Super-classes obo:PEFF_0000003c

PNamec # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001002
Super-classes obo:PEFF_0000003c

NcbiTaxIdc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001003
Super-classes obo:PEFF_0000003c

TaxNamec # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001004
Super-classes obo:PEFF_0000003c

GNamec # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001005
Super-classes obo:PEFF_0000003c

Lengthc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001006
Super-classes obo:PEFF_0000003c

SVc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001007
Super-classes obo:PEFF_0000003c

EVc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001008
Super-classes obo:PEFF_0000003c

PEc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001009
Super-classes obo:PEFF_0000003c

Processedc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001010
Super-classes obo:PEFF_0000003c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:PEFF_1002001c

Variantc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001011
Description

This term was made obsolete in favor of VariantSimple and VariantComplex.
Super-classes obo:PEFF_0000003c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:PEFF_1002001c

ModResPsic # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001012
Super-classes obo:PEFF_0000003c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:PEFF_1002001c

ModResc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001013
Super-classes obo:PEFF_0000003c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:PEFF_1002001c

AltACc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001014
Super-classes obo:PEFF_0000003c

SeqStatusc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001015
Super-classes obo:PEFF_0000003c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:PEFF_1002003c

CCc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001016
Super-classes obo:PEFF_0000003c

KWc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001017
Super-classes obo:PEFF_0000003c

GOc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001018
Super-classes obo:PEFF_0000003c

XRefc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001019
Super-classes obo:PEFF_0000003c

mature proteinc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001020
Super-classes obo:PEFF_0001032c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:PEFF_1002001c

signal peptidec # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001021
Super-classes obo:PEFF_0001032c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:PEFF_1002001c

transit peptidec # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001022
Super-classes obo:PEFF_0001032c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:PEFF_1002001c

Conflictc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001023
Super-classes obo:PEFF_0000003c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:PEFF_1002001c

Crc64c # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001024
Super-classes obo:PEFF_0000003c

Domainc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001025
Super-classes obo:PEFF_0000003c

IDc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001026
Super-classes obo:PEFF_0000003c

ModResUnimodc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001027
Super-classes obo:PEFF_0000003c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:PEFF_1002001c

VariantSimplec # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001028
Super-classes obo:PEFF_0000003c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:PEFF_1002001c

VariantComplexc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001029
Super-classes obo:PEFF_0000003c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:PEFF_1002001c

Proteoformc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001030
Super-classes obo:PEFF_0000003c

DisulfideBondc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001031
Super-classes obo:PEFF_0000003c

PEFF molecule processing keywordc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001032
Super-classes obo:PEFF_0000003c
Sub-classes obo:PEFF_0001034c
obo:PEFF_0001020c
obo:PEFF_0001022c
obo:PEFF_0001035c
obo:PEFF_0001021c

Commentc # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001033
Super-classes obo:PEFF_0000003c

propeptidec # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001034
Super-classes obo:PEFF_0001032c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:PEFF_1002001c

initiator methioninec # Classes

URI http://purl.obolibrary.org/obo/PEFF_0001035
Super-classes obo:PEFF_0001032c
Restrictions http://purl.obolibrary.org/obo/ms#has_regexpop some obo:PEFF_1002001c

regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional commentc # Classes

URI http://purl.obolibrary.org/obo/PEFF_1002001
Super-classes obo:MS_1002479c

regular expression for PEFF molecular sequence typec # Classes

URI http://purl.obolibrary.org/obo/PEFF_1002002
Super-classes obo:MS_1002479c

regular expression for PEFF sequence statusc # Classes

URI http://purl.obolibrary.org/obo/PEFF_1002003
Super-classes obo:MS_1002479c

UO_0000002c # Classes

URI http://purl.obolibrary.org/obo/UO_0000002

UO_0000008c # Classes

URI http://purl.obolibrary.org/obo/UO_0000008

UO_0000010c # Classes

URI http://purl.obolibrary.org/obo/UO_0000010

UO_0000012c # Classes

URI http://purl.obolibrary.org/obo/UO_0000012

UO_0000017c # Classes

URI http://purl.obolibrary.org/obo/UO_0000017

UO_0000018c # Classes

URI http://purl.obolibrary.org/obo/UO_0000018

UO_0000021c # Classes

URI http://purl.obolibrary.org/obo/UO_0000021

UO_0000027c # Classes

URI http://purl.obolibrary.org/obo/UO_0000027

UO_0000028c # Classes

URI http://purl.obolibrary.org/obo/UO_0000028

UO_0000031c # Classes

URI http://purl.obolibrary.org/obo/UO_0000031

UO_0000098c # Classes

URI http://purl.obolibrary.org/obo/UO_0000098

UO_0000106c # Classes

URI http://purl.obolibrary.org/obo/UO_0000106

UO_0000110c # Classes

URI http://purl.obolibrary.org/obo/UO_0000110

UO_0000112c # Classes

URI http://purl.obolibrary.org/obo/UO_0000112

UO_0000150c # Classes

URI http://purl.obolibrary.org/obo/UO_0000150

UO_0000166c # Classes

URI http://purl.obolibrary.org/obo/UO_0000166

UO_0000169c # Classes

URI http://purl.obolibrary.org/obo/UO_0000169

UO_0000175c # Classes

URI http://purl.obolibrary.org/obo/UO_0000175

UO_0000185c # Classes

URI http://purl.obolibrary.org/obo/UO_0000185

UO_0000187c # Classes

URI http://purl.obolibrary.org/obo/UO_0000187

UO_0000189c # Classes

URI http://purl.obolibrary.org/obo/UO_0000189

UO_0000218c # Classes

URI http://purl.obolibrary.org/obo/UO_0000218

UO_0000221c # Classes

URI http://purl.obolibrary.org/obo/UO_0000221

UO_0000222c # Classes

URI http://purl.obolibrary.org/obo/UO_0000222

UO_0000228c # Classes

URI http://purl.obolibrary.org/obo/UO_0000228

UO_0000266c # Classes

URI http://purl.obolibrary.org/obo/UO_0000266

UO_0000268c # Classes

URI http://purl.obolibrary.org/obo/UO_0000268

UO_0000269c # Classes

URI http://purl.obolibrary.org/obo/UO_0000269

UO_0000271c # Classes

URI http://purl.obolibrary.org/obo/UO_0000271

UO_0000324c # Classes

URI http://purl.obolibrary.org/obo/UO_0000324

Object Properties ↑

has_domainop # OPs

URI http://purl.obolibrary.org/obo/ms#has_domain

has_orderop # OPs

URI http://purl.obolibrary.org/obo/ms#has_order

has regexpop # OPs

URI http://purl.obolibrary.org/obo/ms#has_regexp

has_unitsop # OPs

URI http://purl.obolibrary.org/obo/ms#has_units

part_ofop # OPs

URI http://purl.obolibrary.org/obo/ms#part_of

Annotation Properties ↑

definitionap # APs

URI http://purl.obolibrary.org/obo/IAO_0000115

term replaced byap # APs

URI http://purl.obolibrary.org/obo/IAO_0100001

ionMass_ap # APs

URI http://purl.obolibrary.org/obo/ionMass_

namespace-id-ruleap # APs

URI http://www.geneontology.org/formats/oboInOwl#NamespaceIdRule

auto-generated-byap # APs

URI http://www.geneontology.org/formats/oboInOwl#auto-generated-by

dateap # APs

URI http://www.geneontology.org/formats/oboInOwl#date

default-namespaceap # APs

URI http://www.geneontology.org/formats/oboInOwl#default-namespace

has_alternative_idap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasAlternativeId

database_cross_referenceap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasDbXref

has_exact_synonymap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasExactSynonym

has_narrow_synonymap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym

has_obo_format_versionap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion

has_obo_namespaceap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasOBONamespace

idap # APs

URI http://www.geneontology.org/formats/oboInOwl#id

saved-byap # APs

URI http://www.geneontology.org/formats/oboInOwl#saved-by

commentap # APs

URI http://www.w3.org/2000/01/rdf-schema#comment

labelap # APs

URI http://www.w3.org/2000/01/rdf-schema#label

deprecatedap # APs

URI http://www.w3.org/2002/07/owl#deprecated

Namespaces ↑

default (:)
http://purl.obolibrary.org/obo/ms.owl
dc
http://purl.org/dc/elements/1.1/
dct
http://purl.org/dc/terms/
obo
http://purl.obolibrary.org/obo/
oboInOwl
http://www.geneontology.org/formats/oboInOwl#
owl
http://www.w3.org/2002/07/owl#
pato
http://purl.obolibrary.org/obo/pato#
prov
http://www.w3.org/ns/prov#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
sdo
https://schema.org/
skos
http://www.w3.org/2004/02/skos/core#
uo
http://purl.obolibrary.org/obo/uo#
xsd
http://www.w3.org/2001/XMLSchema#

Legend

cClasses
opObject Properties
fpFunctional Properties
dpData Properties
dpAnnotation Properties
pProperties
niNamed Individuals