IRI:
http://purl.obolibrary.org/obo/ms.owl
Version IRI:
http://purl.obolibrary.org/obo/ms/4.1.67/ms.owl
Imported Ontologies:
http://purl.obolibrary.org/obo/pato.owl (visualise it with LODE)
http://purl.obolibrary.org/obo/uo.owl (visualise it with LODE)
Other visualisation:
Ontology source

Abstract

For any queries contact psidev-ms-vocab@lists.sourceforge.net

Table of Content

  1. Classes
  2. Object Properties
  3. Annotation Properties
  4. Namespace Declarations

Classes

((?<=D))|((?=D))c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001334

has super-classes
Cleavage agent regular expressionc

(?<=[^E]E)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001959

has super-classes
Cleavage agent regular expressionc

(?<=[ALIV])(?c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001957

has super-classes
Cleavage agent regular expressionc

(?<=[BDEZ])(?!P)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001340

has super-classes
Cleavage agent regular expressionc

(?<=[EZ])(?!P)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001341

has super-classes
Cleavage agent regular expressionc

(?<=[FL])c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001337

has super-classes
Cleavage agent regular expressionc

(?<=[FYWL])(?!P)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001332

has super-classes
Cleavage agent regular expressionc

(?<=[FYWLKR])(?!P)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001338

has super-classes
Cleavage agent regular expressionc

(?<=[HKR]P)(?c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001958

has super-classes
Cleavage agent regular expressionc

(?<=[KR])c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001339

has super-classes
Cleavage agent regular expressionc

(?<=[KR])(?!P)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001176

has super-classes
Cleavage agent regular expressionc

(?<=K)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001336

has super-classes
Cleavage agent regular expressionc

(?<=K)(?!P)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001335

has super-classes
Cleavage agent regular expressionc

(?<=M)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001333

has super-classes
Cleavage agent regular expressionc

(?<=R)(?!P)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001272

has super-classes
Cleavage agent regular expressionc

(?<=W)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001960

has super-classes
Cleavage agent regular expressionc

(?=[BD])c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001273

has super-classes
Cleavage agent regular expressionc

(?=[DE])c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001274

has super-classes
Cleavage agent regular expressionc

(?=[KR])c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002707

has super-classes
Cleavage agent regular expressionc

1200 series LC/MSD SLc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000467

has super-classes
Agilent instrument modelc

1200 series LC/MSD VLc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000478

has super-classes
Agilent instrument modelc

16-bit floatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000520

has super-classes
binary data typec

2-iodobenzoatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001918

has super-classes
cleavage agent namec
has regexpop some (?<=W)c

2000 QTRAPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002577

has super-classes
SCIEX instrument modelc

2500 QTRAPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002578

has super-classes
SCIEX instrument modelc

2E Mass Spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000321

This child of the former purgatory term m/z Separation Method was made obsolete.

3100c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001786

has super-classes
Waters instrument modelc

32-bit floatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000521

has super-classes
binary data typec

32-bit integerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000519

has super-classes
binary data typec

3200 QTRAPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000651

has super-classes
SCIEX instrument modelc

3500 QTRAPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002579

has super-classes
SCIEX instrument modelc

4000 QTRAPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000139

has super-classes
SCIEX instrument modelc

4000 QTRAPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000870

This term was obsoleted because was redundant to MS:1000139.
has super-classes
SCIEX instrument modelc

4000 Series Explorer Softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000659

has super-classes
SCIEX softwarec
acquisition softwarec
analysis softwarec
data processing softwarec

4700 Explorerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000537

has super-classes
Applied Biosystems softwarec
acquisition softwarec
analysis softwarec
data processing softwarec

4700 Proteomics Analyzerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000140

has super-classes
Applied Biosystems instrument modelc

4800 Plus MALDI TOF/TOFc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000652

has super-classes
SCIEX instrument modelc

4800 Proteomics Analyzerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000658

has super-classes
Applied Biosystems instrument modelc

5800 TOF/TOFc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001482

has super-classes
SCIEX instrument modelc

6110 Quadrupole LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000468

has super-classes
Agilent instrument modelc

6120A Quadrupole LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000469

has super-classes
Agilent instrument modelc

6120B Quadrupole LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002794

has super-classes
Agilent instrument modelc

6130 Quadrupole LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000470

has super-classes
Agilent instrument modelc

6140 Quadrupole LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000471

has super-classes
Agilent instrument modelc

6150 Quadrupole LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002795

has super-classes
Agilent instrument modelc

6210 Time-of-Flight LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000472

has super-classes
Agilent instrument modelc

6220 Time-of-Flight LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000675

has super-classes
Agilent instrument modelc

6224 Time-of-Flight LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002796

has super-classes
Agilent instrument modelc

6230A Time-of-Flight LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002797

has super-classes
Agilent instrument modelc

6230B Time-of-Flight LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002798

has super-classes
Agilent instrument modelc

6300 Series Ion Trap Data Analysis Softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000688

has super-classes
Agilent softwarec
acquisition softwarec
analysis softwarec
data processing softwarec

6310 Ion Trap LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000473

has super-classes
Agilent instrument modelc

6320 Ion Trap LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000474

has super-classes
Agilent instrument modelc

6330 Ion Trap LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000475

has super-classes
Agilent instrument modelc

6340 Ion Trap LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000476

has super-classes
Agilent instrument modelc

64-bit floatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000523

has super-classes
binary data typec

64-bit integerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000522

has super-classes
binary data typec

6410 Triple Quadrupole LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000477

has super-classes
Agilent instrument modelc

6420 Triple Quadrupole LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002444

has super-classes
Agilent instrument modelc

6430 Triple Quadrupole LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002799

has super-classes
Agilent instrument modelc

6460 Triple Quadrupole LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002445

has super-classes
Agilent instrument modelc

6490 Triple Quadrupole LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002446

has super-classes
Agilent instrument modelc

6495A Triple Quadrupole LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002800

has super-classes
Agilent instrument modelc

6495B Triple Quadrupole LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002801

has super-classes
Agilent instrument modelc

6510 Quadrupole Time-of-Flight LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000676

has super-classes
Agilent instrument modelc

6520A Quadrupole Time-of-Flight LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000677

has super-classes
Agilent instrument modelc

6520B Q-TOF LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002785

has super-classes
Agilent instrument modelc

6530A Q-TOF LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002786

has super-classes
Agilent instrument modelc

6530B Q-TOF LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002787

has super-classes
Agilent instrument modelc

6538 Q-TOF LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002788

has super-classes
Agilent instrument modelc

6540 Q-TOF LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002789

has super-classes
Agilent instrument modelc

6542 Q-TOF LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002790

has super-classes
Agilent instrument modelc

6545 Q-TOF LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002791

has super-classes
Agilent instrument modelc

6550 iFunnel Q-TOF LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002783

has super-classes
Agilent instrument modelc

6550A iFunnel Q-TOF LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002784

has super-classes
Agilent instrument modelc

6560 Q-TOF LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002792

has super-classes
Agilent instrument modelc

6570 Q-TOF LC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002793

has super-classes
Agilent instrument modelc

7000A Triple Quadrupole GC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002802

has super-classes
Agilent instrument modelc

7000B Triple Quadrupole GC/MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002803

has super-classes
Agilent instrument modelc

7800 Quadrupole ICP-MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002804

has super-classes
Agilent instrument modelc

8800 Triple Quadrupole ICP-MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002805

has super-classes
Agilent instrument modelc

AA sequencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001344

has super-classes
database sequence detailsc

AAIndex mass tablec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001346

has super-classes
mass table sourcec

ABI WIFF formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000562

has super-classes
mass spectrometer file formatc

absolute quantitation analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002514

has super-classes
quantitation analysis summaryc

absolute quantityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001137

has super-classes
quantification datatypec
has value typeop some xsd doublec

absorption chromatogramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000812

has super-classes
electromagnetic radiation chromatogramc

absorption spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000806

has super-classes
data file contentc
spectrum typec

Accela PDAc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000623

has super-classes
Thermo Scientific instrument modelc

accelerating voltagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000304

has super-classes
ion optics attributec
has value typeop some xsd floatc
has_unitsop some u o 0000218c

accelerator mass spectrometryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000238

This child of the former purgatory term mass spectrometer was made obsolete.

Accepted manuscriptc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002865

has super-classes
Experiment additional parameterc

accuracyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000014

has super-classes
mass analyzer attributec
has value typeop some xsd floatc
has_unitsop some u o 0000169c
has_unitsop some m/zc

accurate massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000207

This child of the former purgatory term ion attribute was made obsolete.
has super-classes
has value typeop some xsd floatc
has_unitsop some u o 0000002c

acquisition parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001954

has super-classes
part_ofop some spectrum generation informationc
has value typeop some xsd stringc
has sub-classes
mass spectrometry acquisition methodc

acquisition softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001455

has super-classes
softwarec
has sub-classes
4000 Series Explorer Softwarec, 4700 Explorerc, 6300 Series Ion Trap Data Analysis Softwarec, Analystc, ChromaTOF HRT softwarec, ChromaTOF softwarec, Data Explorerc, FlexControlc, GPS Explorerc, HCTcontrolc, MALDI Solutionsc, MALDI Solutions LC-MALDIc, MassHunter Data Acquisitionc, MassHunter Easy Accessc, MassLynxc, SCIEX TOF/TOF Series Explorer Softwarec, Voyager Biospectrometry Workstation Systemc, Xcaliburc, apexControlc, dpControlc, esquireControlc, micrOTOFcontrolc, spControlc

Acquity SQDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001787

has super-classes
Waters instrument modelc

Acquity TQDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001788

has super-classes
Waters instrument modelc

ACQUITY UPLCc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001761

has super-classes
Waters instrument modelc

Acquity UPLC FLRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000819

has super-classes
Waters instrument modelc
fluorescence detectorc

ACQUITY UPLC H-Classc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001762

has super-classes
Waters instrument modelc

ACQUITY UPLC H-Class Bioc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001763

has super-classes
Waters instrument modelc

ACQUITY UPLC I-Classc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001764

has super-classes
Waters instrument modelc

Acquity UPLC PDAc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000818

has super-classes
Waters instrument modelc
photodiode array detectorc

ACQUITY UPLC Systems with 2D Technologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001765

has super-classes
Waters instrument modelc

activation energyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000509

has super-classes
precursor activation attributec
has_unitsop some u o 0000266c
has value typeop some xsd floatc

add_othersc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001326

This former purgatory term was made obsolete.

Additional associated raw file URIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002859

has super-classes
Associated file URIc
has value typeop some xsd stringc

additional descriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000461

This former purgatory term was made obsolete.

adductc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003055

has super-classes
moleculec
has sub-classes
adduct ionc

adduct deconvolutionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003220

has super-classes
data processing actionc

adduct ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000353

has super-classes
adductc
has sub-classes
negative mode adduct ionc, positive mode adduct ionc

adduct ion attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002809

has super-classes
part_ofop some adduct ionc
has sub-classes
adduct ion formulac

adduct ion formulac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002813

has super-classes
adduct ion attributec
has regexpop some Regular expression for adduct ion formulac
has value typeop some xsd stringc

adduct ion isotopec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002811

has super-classes
adduct ion propertyc
has value typeop some xsd stringc

adduct ion propertyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003056

has super-classes
part_ofop some adduct ionc
has sub-classes
adduct ion X m/zc, adduct ion isotopec

adduct ion X m/zc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002810

has super-classes
adduct ion propertyc
has value typeop some xsd stringc

adiabatic ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000380

has super-classes
ionization typec

Agilent instrument modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000490

has super-classes
instrument modelc
has sub-classes
1200 series LC/MSD SLc, 1200 series LC/MSD VLc, 6110 Quadrupole LC/MSc, 6120A Quadrupole LC/MSc, 6120B Quadrupole LC/MSc, 6130 Quadrupole LC/MSc, 6140 Quadrupole LC/MSc, 6150 Quadrupole LC/MSc, 6210 Time-of-Flight LC/MSc, 6220 Time-of-Flight LC/MSc, 6224 Time-of-Flight LC/MSc, 6230A Time-of-Flight LC/MSc, 6230B Time-of-Flight LC/MSc, 6310 Ion Trap LC/MSc, 6320 Ion Trap LC/MSc, 6330 Ion Trap LC/MSc, 6340 Ion Trap LC/MSc, 6410 Triple Quadrupole LC/MSc, 6420 Triple Quadrupole LC/MSc, 6430 Triple Quadrupole LC/MSc, 6460 Triple Quadrupole LC/MSc, 6490 Triple Quadrupole LC/MSc, 6495A Triple Quadrupole LC/MSc, 6495B Triple Quadrupole LC/MSc, 6510 Quadrupole Time-of-Flight LC/MSc, 6520A Quadrupole Time-of-Flight LC/MSc, 6520B Q-TOF LC/MSc, 6530A Q-TOF LC/MSc, 6530B Q-TOF LC/MSc, 6538 Q-TOF LC/MSc, 6540 Q-TOF LC/MSc, 6542 Q-TOF LC/MSc, 6545 Q-TOF LC/MSc, 6550 iFunnel Q-TOF LC/MSc, 6550A iFunnel Q-TOF LC/MSc, 6560 Q-TOF LC/MSc, 6570 Q-TOF LC/MSc, 7000A Triple Quadrupole GC/MSc, 7000B Triple Quadrupole GC/MSc, 7800 Quadrupole ICP-MSc, 8800 Triple Quadrupole ICP-MSc

Agilent MassHunter formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001509

has super-classes
mass spectrometer file formatc

Agilent MassHunter nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001508

has super-classes
native spectrum identifier formatc

Agilent softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000689

has super-classes
softwarec
has sub-classes
6300 Series Ion Trap Data Analysis Softwarec, Genespring MSc, METLINc, MassHunter BioConfirmc, MassHunter Data Acquisitionc, MassHunter Easy Accessc, MassHunter Mass Profilerc, MassHunter Metabolite IDc, MassHunter Qualitative Analysisc, MassHunter Quantitative Analysisc, Spectrum Mill for MassHunter Workstationc

ALEXc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002976

has super-classes
data processing softwarec
lipidomics analysis softwarec

ALEX123c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002977

has super-classes
data processing softwarec
lipidomics analysis softwarec

alpha-cleavagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000410

This child of the former purgatory term ion reaction was made obsolete.

AltACc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001014

has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc

alternate massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001361

has super-classes
ambiguous residuesc
has value typeop some xsd doublec
has_unitsop some u o 0000221c

alternate single letter codesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001360

has super-classes
ambiguous residuesc
has value typeop some xsd stringc

alternatingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000466

This term was made obsolete because .

alternating polarity modec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002833

has super-classes
run attributec

Amandac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002336

has super-classes
analysis softwarec

Amanda:AmandaScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002319

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

amaZon ETDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001542

has super-classes
Bruker Daltonics amaZon seriesc

amaZon Speedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002301

has super-classes
Bruker Daltonics amaZon seriesc

amaZon Speed ETDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002300

has super-classes
Bruker Daltonics amaZon seriesc

amaZon Xc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001546

has super-classes
Bruker Daltonics amaZon seriesc

ambiguous residuesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001359

has super-classes
part_ofop some spectrum interpretationc
has sub-classes
alternate massc, alternate single letter codesc

amino acidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003039

has super-classes
small moleculec

aminoxyTMT quantitation analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002758

has super-classes
isobaric label quantitation analysisc

analog ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000355

This child of the former purgatory term ion chemical type was made obsolete.

analog-digital converterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000117

has super-classes
detector acquisition modec

analysis attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002687

has super-classes
spectrum identification result detailsc
has sub-classes
PTM localization attributec, identification attributec

analysis softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001456

has super-classes
softwarec
has sub-classes
4000 Series Explorer Softwarec, 4700 Explorerc, 6300 Series Ion Trap Data Analysis Softwarec, Amandac, Analystc, Andromedac, Ascore softwarec, BioAnalystc, BioToolsc, Bioworksc, Byonicc, CAMERAc, CLINPROTc, CLINPROT microc, ChromaTOF HRT softwarec, ChromaTOF softwarec, Cometc, Compassc, Compass OpenAccessc, Compass for HCT/esquirec, Compass for micrOTOFc, DTASelectc, Data Explorerc, DataAnalysisc, DeBunkerc, DirecTagc, EPIFANYc, Empowerc, FlexAnalysisc, GPS Explorerc, Genespring MSc, IdentiPyc, IsobariQc, LightSight Softwarec, MALDI Solutionsc, MALDI Solutions LC-MALDIc, METLINc, MRMPilot Softwarec, MS-GFc, MS-GF+c, MSDKc, MSFraggerc, MSPathFinderc, MSQuantc, MSnbasec, MZminec, Maltcmsc, MarkerView Softwarec, Mascotc, Mascot Distillerc, Mascot Integrac, Mascot Parserc, MassHunter BioConfirmc, MassHunter Mass Profilerc, MassHunter Metabolite IDc, MassHunter Qualitative Analysisc, MassHunter Quantitative Analysisc, MassLynxc, Mauic, MaxQuantc, MetaMorpheusc, Morpheusc, MultiQuantc, MyriMatchc, NIST MSPepSearchc, Novorc, OMSSAc, PAnalyzerc, PEAKS Nodec, PEAKS Onlinec, PEAKS Studioc, PIAc, PTX-QCc, PatternLabc, PeakForestc, PepNovoc, Pepitomec, PeptideShakerc, Percolatorc, Phenyxc, Philosopherc, PinPointc, Pro BLASTc, Pro ICATc, Pro IDc, Pro Quantc, ProLuCIDc, ProSightc, ProfileAnalysisc, Prolinec, ProteinExtractorc, ProteinLynx Global Serverc, ProteinPilot Softwarec, ProteinProspectorc, ProteinScapec, Proteiosc, ProteoWizard softwarec, Proteome Discovererc, QuaMeter IDFreec, QuantAnalysisc, SCIEX TOF/TOF Series Explorer Softwarec, SCiLS Labc, SEQUESTc, SIM-XLc, SQIDc, Scaffoldc, Skyline mzQuantML converterc, SpectraSTc, Spectrum Mill for MassHunter Workstationc, TDPortalc, TOPP softwarec, TagReconc, Tidec, TissueView Softwarec, TopFDc, TopMGc, TopPICc, Trans-Proteomic Pipelinec, Trans-Proteomic Pipeline softwarec, UNIFYc, Voyager Biospectrometry Workstation Systemc, X!Tandemc, XCMSc, Xcaliburc, flexImagingc, greylagc, i3tmsc, iMonDBc, mzRc, mzidLibc, pFindc, pNovoc, pyteomicsc, small molecule analysis softwarec, xic, xiFDRc

Analystc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000551

has super-classes
SCIEX softwarec
acquisition softwarec
analysis softwarec
data processing softwarec

analyte mixture membersc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003163

has super-classes
interpreted spectrum attributec
has value typeop some list of integersc

analyzer scan offsetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000803

has super-classes
scan attributec
has_unitsop some m/zc
has value typeop some xsd floatc

analyzer typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000010

This former purgatory term was made obsolete.

anchor proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001591

has super-classes
protein group or subset relationshipc
has value typeop some xsd stringc

Andi-CHROM formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002443

has super-classes
chromatograph file formatc

Andi-MS formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002441

has super-classes
mass spectrometer file formatc

Andromedac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002337

has super-classes
analysis softwarec

Andromeda peptide PEPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003098

has super-classes
search engine specific peptide sequence-level identification statisticc
has value typeop some xsd doublec

Andromeda result formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002576

has super-classes
intermediate analysis formatc

Andromeda:apl file formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002996

has super-classes
mass spectrometer file formatc

Andromeda:PEPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002995

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec
has_orderop some higher score betterc
has_domainop some value between 0 and 1 inclusivec

Andromeda:scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002338

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec
has_orderop some higher score betterc

ANOVA p-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001854

has super-classes
p-valuec
has value typeop some xsd doublec

ANOVA-testc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002071

has super-classes
quantification data processingc
has value typeop some xsd stringc

anti-aromatic ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000356

This child of the former purgatory term ion chemical type was made obsolete.

Anubisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002410

has super-classes
SRM softwarec
quantitation software namec

apex IVc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000141

has super-classes
Bruker Daltonics apex seriesc

apex Qc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000142

has super-classes
Bruker Daltonics apex seriesc

apex ultrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000695

has super-classes
Bruker Daltonics apex seriesc

APEX valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001906

has super-classes
protein-level quantification datatypec
has value typeop some xsd doublec

apexControlc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000706

has super-classes
Bruker softwarec
acquisition softwarec

API 100c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002585

has super-classes
SCIEX instrument modelc

API 100LCc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002586

has super-classes
SCIEX instrument modelc

API 150EXc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000143

has super-classes
SCIEX instrument modelc

API 150EX Prepc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000144

has super-classes
SCIEX instrument modelc

API 165c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002587

has super-classes
SCIEX instrument modelc

API 2000c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000145

has super-classes
SCIEX instrument modelc

API 300c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002588

has super-classes
SCIEX instrument modelc

API 3000c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000146

has super-classes
SCIEX instrument modelc

API 3200c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000653

has super-classes
SCIEX instrument modelc

API 350c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002589

has super-classes
SCIEX instrument modelc

API 365c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002590

has super-classes
SCIEX instrument modelc

API 4000c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000147

has super-classes
SCIEX instrument modelc

API 5000c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000654

has super-classes
SCIEX instrument modelc

appearance energyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000209

This child of the former purgatory term ion attribute was made obsolete.
has super-classes
has value typeop some xsd floatc
has_unitsop some u o 0000266c

Applied Biosystems instrument modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000495

has super-classes
instrument modelc
has sub-classes
4700 Proteomics Analyzerc, 4800 Proteomics Analyzerc, Voyager-DE PROc, Voyager-DE STRc

Applied Biosystems softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000691

has super-classes
softwarec
has sub-classes
4700 Explorerc, Data Explorerc, Voyager Biospectrometry Workstation Systemc

area normalizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001999

has super-classes
intensity normalizationc

area peak pickingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000801

has super-classes
peak pickingc
has sub-classes
sophisticated numerical annotation procedurec

Arg-Cc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001303

has super-classes
cleavage agent namec
has regexpop some (?<=R)(?!P)c

aromatic ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000354

This child of the former purgatory term ion chemical type was made obsolete.

array detectorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000345

has super-classes
detector typec
has sub-classes
microchannel plate detectorc, photodiode array detectorc

ASAPRatioc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002574

has super-classes
Trans-Proteomic Pipeline softwarec

Ascorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001985

has super-classes
PTM localization PSM-level statisticc
has regexpop some regular expression for modification localization scoringc
has value typeop some xsd stringc

Ascore softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001984

has super-classes
analysis softwarec

Ascore thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002556

has super-classes
PTM localization score thresholdc
has value typeop some xsd doublec

ASN.1c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001349

has super-classes
database file formatsc

Asp-Nc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001304

has super-classes
cleavage agent namec
has regexpop some (?=[BD])c

Asp-N_ambicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001305

has super-classes
cleavage agent namec
has regexpop some (?=[DE])c

assay attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002110

has super-classes
quantification object attributec

assay label attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002111

has super-classes
quantification object attributec
has sub-classes
sample labelc

assigned intensity fractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003166

has super-classes
interpreted spectrum attributec
has value typeop some xsd floatc
has sub-classes
library entry commentc

Associated file URIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002845

has super-classes
Experiment additional parameterc
has value typeop some xsd stringc
has sub-classes
Additional associated raw file URIc, Associated raw file URIc, Gel image file URIc, Other type file URIc, Peak list file URIc, Result file URIc, Search engine output file URIc

Associated raw file URIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002846

has super-classes
Associated file URIc
has value typeop some xsd stringc

association reactionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000409

This child of the former purgatory term ion reaction was made obsolete.

associative ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000381

has super-classes
ionization typec

ATAQSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000925

has super-classes
SRM softwarec

atmospheric pressure chemical ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000070

has super-classes
atmospheric pressure ionizationc

atmospheric pressure ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000240

has super-classes
ionization typec
has sub-classes
atmospheric pressure chemical ionizationc, atmospheric pressure matrix-assisted laser desorption ionizationc, atmospheric pressure photoionizationc, desorption electrospray ionizationc

atmospheric pressure matrix-assisted laser desorption ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000239

has super-classes
atmospheric pressure ionizationc

atmospheric pressure photoionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000382

has super-classes
atmospheric pressure ionizationc

Atmostpheric Pressure Photoionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000241

This term was made obsolete because it was replaced by atmospheric pressure photoionization (MS:1000382).

atomc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003034

has super-classes
molecular entityc

attenuationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000848

has super-classes
laser attributec
has_unitsop some u o 0000187c
has value typeop some xsd floatc

attribute coefficient of variationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003178

has super-classes
has value typeop some xsd floatc
has value typeop some xsd intc
part_ofop some spectral library attributec

attribute maximumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003174

has super-classes
has value typeop some xsd intc
part_ofop some spectral library attributec
has value typeop some xsd floatc

attribute meanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003176

has super-classes
part_ofop some spectral library attributec
has value typeop some xsd intc
has value typeop some xsd floatc

attribute medianc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003180

has super-classes
part_ofop some spectral library attributec
has value typeop some xsd intc
has value typeop some xsd floatc

attribute minimumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003175

has super-classes
has value typeop some xsd intc
part_ofop some spectral library attributec
has value typeop some xsd floatc

attribute standard deviationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003177

has super-classes
has value typeop some xsd floatc
part_ofop some spectral library attributec
has value typeop some xsd intc

attribute summary valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003179

has super-classes
has value typeop some xsd intc
has value typeop some xsd floatc
part_ofop some spectral library attributec

Auto Spec Ultima NTc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000150

has super-classes
Waters instrument modelc

autodetachmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000383

has super-classes
ionization typec

autoflexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001555

has super-classes
Bruker Daltonics flex seriesc

autoflex IIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000148

has super-classes
Bruker Daltonics flex seriesc

autoflex II TOF/TOFc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001553

has super-classes
Bruker Daltonics flex seriesc

autoflex III smartbeamc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000696

has super-classes
Bruker Daltonics flex seriesc

autoflex III TOF/TOF smartbeamc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001554

has super-classes
Bruker Daltonics flex seriesc

autoflex TOF/TOFc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000149

has super-classes
Bruker Daltonics flex seriesc

autoionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000384

has super-classes
ionization typec

AutoSpec Premierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002277

has super-classes
Waters instrument modelc

average m/z deviationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003210

has super-classes
interpreted spectrum attributec
has_unitsop some u o 0000169c
has value typeop some xsd floatc
has_unitsop some m/zc

average massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000208

This child of the former purgatory term ion attribute was made obsolete.
has super-classes
has value typeop some xsd floatc
has_unitsop some u o 0000002c

average product ion intensityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002225

has super-classes
product ion intensityc
has_unitsop some number of detector countsc
has_unitsop some percent of base peak times 100c
has_unitsop some percent of base peakc
has_unitsop some counts per secondc

axial ejection linear ion trapc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000078

has super-classes
linear ion trapc

AXIMA Assurance Linear MALDI-TOFc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000612

has super-classes
Shimadzu MALDI-TOF instrument modelc

AXIMA CFR MALDI-TOFc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000607

has super-classes
Shimadzu MALDI-TOF instrument modelc

AXIMA Confidence MALDI-TOFc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000611

has super-classes
Shimadzu MALDI-TOF instrument modelc

AXIMA Performance MALDI-TOF/TOFc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000610

has super-classes
Shimadzu MALDI-TOF instrument modelc

AXIMA-CFR plusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000609

has super-classes
Shimadzu MALDI-TOF instrument modelc

AXIMA-QITc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000608

has super-classes
Shimadzu MALDI-TOF instrument modelc

base peakc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000210

has super-classes
peakc

base peak intensityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000505

has super-classes
spectrum propertyc
has_unitsop some percent of base peak times 100c
has_unitsop some number of detector countsc
has_unitsop some percent of base peakc
has_unitsop some counts per secondc
has_unitsop some u o 0000269c
has value typeop some xsd floatc

base peak m/zc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000504

has super-classes
spectrum propertyc
has value typeop some xsd floatc
has_unitsop some m/zc

baselinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000085

has super-classes
resolution measurement methodc

baseline arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002530

has super-classes
binary data arrayc

baseline reductionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000593

has super-classes
data processing actionc
has sub-classes
convex hull baseline reductionc, median baseline reductionc, top hat baseline reductionc

BaselineFilterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000753

has super-classes
TOPP softwarec

basepeak chromatogramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000628

has super-classes
ion current chromatogramc

beam-type collision-induced dissociationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000422

has super-classes
collision-induced dissociationc
has sub-classes
higher energy beam-type collision-induced dissociationc, supplemental beam-type collision-induced dissociationc

below precursor intensity dominance charge state calculationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000779

has super-classes
charge state calculationc

best replicate spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003068

has super-classes
spectrum aggregation typec

beta-cleavagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000411

This child of the former purgatory term ion reaction was made obsolete.

binary data arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000513

has super-classes
part_ofop some spectrumc
part_ofop some chromatogramc
has sub-classes
baseline arrayc, charge arrayc, flow rate arrayc, intensity arrayc, ion mobility arrayc, m/z arrayc, mass arrayc, mean charge arrayc, noise arrayc, non-standard data arrayc, pressure arrayc, resolution arrayc, sampled noise baseline arrayc, sampled noise intensity arrayc, sampled noise m/z arrayc, scanning quadrupole position lower bound m/z arrayc, scanning quadrupole position upper bound m/z arrayc, signal to noise arrayc, temperature arrayc, time arrayc, wavelength arrayc

binary data compression parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003091

has super-classes
part_ofop some spectrumc
part_ofop some chromatogramc
has sub-classes
number of mantissa bits truncatedc

binary data compression typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000572

has super-classes
part_ofop some chromatogramc
part_ofop some spectrumc
has sub-classes
MS-Numpress linear prediction compressionc, MS-Numpress linear prediction compression followed by zlib compressionc, MS-Numpress positive integer compressionc, MS-Numpress positive integer compression followed by zlib compressionc, MS-Numpress short logged float compressionc, MS-Numpress short logged float compression followed by zlib compressionc, no compressionc, truncation and zlib compressionc, truncation, delta prediction and zlib compressionc, truncation, linear prediction and zlib compressionc, zlib compressionc

binary data typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000518

has super-classes
part_ofop some chromatogramc
part_ofop some spectrumc
has sub-classes
16-bit floatc, 32-bit floatc, 32-bit integerc, 64-bit floatc, 64-bit integerc, null-terminated ASCII stringc

BioAnalystc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000667

has super-classes
SCIEX softwarec
analysis softwarec
data processing softwarec

biological replicatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001809

has super-classes
study variable attributec

BioTOFc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001537

has super-classes
Bruker Daltonics BioTOF seriesc

BioTOF IIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000151

has super-classes
Bruker Daltonics BioTOF seriesc

BioTOF IIIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001538

has super-classes
Bruker Daltonics BioTOF seriesc

BioTOF-Qc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000152

has super-classes
Bruker Daltonics BioTOF seriesc

BioToolsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000707

has super-classes
Bruker softwarec
analysis softwarec
data processing softwarec

Bioworksc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000533

has super-classes
Thermo Finnigan softwarec
analysis softwarec
data processing softwarec

Bioworks SRF formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000742

has super-classes
mass spectrometer file formatc
intermediate analysis formatc

blackbody infrared radiative dissociationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000242

has super-classes
dissociation methodc

Bruker BAF formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000815

has super-classes
mass spectrometer file formatc

Bruker BAF nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000772

has super-classes
native spectrum identifier formatc

Bruker BAF nativeID format, combined spectrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002651

has super-classes
native spectrum identifier format, combined spectrac
has value typeop some xsd stringc

Bruker Container formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002302

has super-classes
mass spectrometer file formatc

Bruker Container nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002303

has super-classes
native spectrum identifier formatc
has value typeop some xsd stringc

Bruker Daltonics amaZon seriesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001545

has super-classes
Bruker Daltonics instrument modelc
has sub-classes
amaZon ETDc, amaZon Speedc, amaZon Speed ETDc, amaZon Xc

Bruker Daltonics apex seriesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001556

has super-classes
Bruker Daltonics instrument modelc
has sub-classes
apex IVc, apex Qc, apex ultrac

Bruker Daltonics BioTOF seriesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001535

has super-classes
Bruker Daltonics instrument modelc
has sub-classes
BioTOFc, BioTOF IIc, BioTOF IIIc, BioTOF-Qc, UltroTOF-Qc

Bruker Daltonics esquire seriesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001533

has super-classes
Bruker Daltonics instrument modelc
has sub-classes
esquire 4000c, esquire 6000c

Bruker Daltonics EVOQ seriesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002294

has super-classes
Bruker Daltonics instrument modelc
has sub-classes
EVOQ Elitec, EVOQ Qubec

Bruker Daltonics flex seriesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001534

has super-classes
Bruker Daltonics instrument modelc
has sub-classes
OmniFlexc, autoflexc, autoflex IIc, autoflex II TOF/TOFc, autoflex III TOF/TOF smartbeamc, autoflex III smartbeamc, autoflex TOF/TOFc, microflexc, microflex IIc, microflex LRFc, microflex LTc, rapifleXc, ultrafleXtremec, ultraflexc, ultraflex III TOF/TOFc, ultraflex TOF/TOFc

Bruker Daltonics HCT Seriesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000697

has super-classes
Bruker Daltonics instrument modelc
has sub-classes
HCTc, HCTplusc, HCTultrac, HCTultra ETD IIc, HCTultra PTMc

Bruker Daltonics instrument modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000122

has super-classes
instrument modelc
has sub-classes
Bruker Daltonics BioTOF seriesc, Bruker Daltonics EVOQ seriesc, Bruker Daltonics HCT Seriesc, Bruker Daltonics SCION seriesc, Bruker Daltonics amaZon seriesc, Bruker Daltonics apex seriesc, Bruker Daltonics esquire seriesc, Bruker Daltonics flex seriesc, Bruker Daltonics maXis seriesc, Bruker Daltonics micrOTOF seriesc, Bruker Daltonics solarix seriesc, Bruker Daltonics timsTOF seriesc

Bruker Daltonics maXis seriesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001547

has super-classes
Bruker Daltonics instrument modelc
has sub-classes
maXisc, maXis 4Gc, maXis IIc

Bruker Daltonics micrOTOF seriesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001536

has super-classes
Bruker Daltonics instrument modelc
has sub-classes
compactc, impactc, impact HDc, impact IIc, micrOTOFc, micrOTOF IIc, micrOTOF-Qc, micrOTOF-Q IIc, micrOTOF-Q IIIc, microTOF LCc

Bruker Daltonics SCION seriesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002293

has super-classes
Bruker Daltonics instrument modelc
has sub-classes
SCION SQc, SCION TQc

Bruker Daltonics solarix seriesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001548

has super-classes
Bruker Daltonics instrument modelc
has sub-classes
solariXc

Bruker Daltonics timsTOF seriesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003123

has super-classes
Bruker Daltonics instrument modelc
has sub-classes
timsTOFc, timsTOF Proc, timsTOF Pro 2c, timsTOF SCPc, timsTOF fleXc

Bruker FID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000825

has super-classes
mass spectrometer file formatc

Bruker FID nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000773

The nativeID must be the same as the source file ID.
has super-classes
native spectrum identifier formatc

Bruker FID nativeID format, combined spectrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002652

The nativeID must be the same as the source file ID.
has super-classes
native spectrum identifier format, combined spectrac
has value typeop some xsd stringc

Bruker softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000692

has super-classes
softwarec
has sub-classes
BioToolsc, CLINPROTc, CLINPROT microc, CLINPROT robotc, ClinProToolsc, Compassc, Compass OpenAccessc, Compass Security Packc, Compass for HCT/esquirec, Compass for micrOTOFc, CompassXportc, CompassXtractc, DataAnalysisc, FlexAnalysisc, FlexControlc, GENOLINKc, GenoToolsc, HCTcontrolc, HyStarc, PROTEINEERc, PROTEINEER dpc, PROTEINEER fcc, PROTEINEER spIIc, PROTEINEER-LCc, PolyToolsc, ProfileAnalysisc, ProteinExtractorc, ProteinScapec, PureDiskc, QuantAnalysisc, TargetAnalysisc, WARP-LCc, apexControlc, dpControlc, esquireControlc, flexImagingc, micrOTOFcontrolc, spControlc

Bruker TDF formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002817

has super-classes
mass spectrometer file formatc

Bruker TDF nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002818

has super-classes
native spectrum identifier formatc

Bruker TDF nativeID format, combined spectrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002819

has super-classes
native spectrum identifier format, combined spectrac
has value typeop some xsd stringc

Bruker U2 formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000816

has super-classes
mass spectrometer file formatc

Bruker U2 nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000823

has super-classes
native spectrum identifier formatc

Bruker XML formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001247

has super-classes
mass spectrometer file formatc

Bruker/Agilent YEP formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000567

has super-classes
mass spectrometer file formatc

Bruker/Agilent YEP nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000771

has super-classes
native spectrum identifier formatc

Bruker/Agilent YEP nativeID format, combined spectrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002650

has super-classes
native spectrum identifier format, combined spectrac
has value typeop some xsd stringc

BSI softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001949

has super-classes
softwarec

buffer gasc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000412

has super-classes
precursor activation attributec
has value typeop some xsd stringc

Byonicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002261

has super-classes
analysis softwarec

Byonic: Peptide AbsLogProbc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002309

has super-classes
PSM-level search engine specific statisticc
has_orderop some higher score betterc
has value typeop some xsd doublec

Byonic: Peptide AbsLogProb2Dc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002311

has super-classes
PSM-level search engine specific statisticc
has_orderop some higher score betterc
has value typeop some xsd doublec

Byonic: Protein AbsLogProbc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002310

has super-classes
search engine specific score for proteinsc
has value typeop some xsd doublec
has_orderop some higher score betterc

Byonic:Best LogProbc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002268

has super-classes
single protein identification statisticc
search engine specific scorec
has value typeop some xsd doublec
has_orderop some lower score betterc

Byonic:Best Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002269

has super-classes
search engine specific score for proteinsc
has value typeop some xsd doublec
has_orderop some higher score betterc

Byonic:Delta Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002263

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec
has_orderop some higher score betterc

Byonic:DeltaMod Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002264

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec
has_orderop some higher score betterc

Byonic:PEPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002265

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec
has_orderop some lower score betterc

Byonic:Peptide LogProbc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002266

has super-classes
PSM-level search engine specific statisticc
has_orderop some lower score betterc
has value typeop some xsd doublec

Byonic:Protein LogProbc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002267

has super-classes
search engine specific score for proteinsc
has value typeop some xsd doublec
has_orderop some lower score betterc

Byonic:Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002262

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec
has_orderop some higher score betterc

c-terminal flanking residuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001113

has super-classes
peptide sequence-level identification attributec
peptide-to-protein mapping attributec
has value typeop some xsd stringc

Calculate Probability Scoresc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002090

has super-classes
common search engine input parameterc
has value typeop some xsd booleanc

calibration spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000928

has super-classes
spectrum typec

CAMERAc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002871

has super-classes
analysis softwarec
data processing softwarec

cationized moleculec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000357

This child of the former purgatory term ion chemical type was made obsolete.

CCc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001016

has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc

centroid spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000127

has super-classes
spectrum representationc

change logc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003199

has super-classes
spectral library attributec
has value typeop some xsd stringc

channeltronc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000107

has super-classes
detector typec

charge arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000516

has super-classes
binary data arrayc

charge deconvolutionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000034

has super-classes
data processing actionc

charge exchange ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000385

has super-classes
ionization typec

charge inversion mass spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000322

has super-classes
mass spectrumc

charge inversion reactionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000414

This child of the former purgatory term ion reaction was made obsolete.

charge permutation reactionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000415

This child of the former purgatory term ion reaction was made obsolete.

charge statec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000041

has super-classes
ion selection attributec
ion propertyc
has value typeop some xsd intc

charge state calculationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000778

has super-classes
data processing actionc
has sub-classes
below precursor intensity dominance charge state calculationc

charge strippingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000245

has super-classes
precursor activation attributec

charge stripping reactionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000416

This child of the former purgatory term ion reaction was made obsolete.

charge transfer reactionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000417

This child of the former purgatory term ion reaction was made obsolete.

charge-induced fragmentationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000413

This child of the former purgatory term ion reaction was made obsolete.

charge-remote fragmentationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000243

This child of the former purgatory term ion reaction was made obsolete.

chemi-ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000386

has super-classes
ionization typec

chemical formulac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000864

has super-classes
molecular entity attributec
has sub-classes
SMILES formulac, empirical formulac, molecular formulac, structural formulac

chemical ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000071

has super-classes
ionization typec

chrom formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002966

has super-classes
mass spectrometer file formatc

ChromaTOF HRT softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001877

has super-classes
acquisition softwarec
analysis softwarec
data processing softwarec
LECO softwarec

ChromaTOF softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001799

has super-classes
acquisition softwarec
analysis softwarec
data processing softwarec
LECO softwarec

chromatogramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000625

has super-classes
part_ofop some spectrum generation informationc

chromatogram attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000808

has super-classes
object attributec
part_ofop some chromatogramc
has sub-classes
chromatogram titlec, highest observed m/zc, highest observed wavelengthc, lowest observed m/zc, lowest observed wavelengthc, negative scanc, positive scanc

chromatogram titlec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000809

This is the preferred storage place for the spectrum title.
has super-classes
chromatogram attributec
has value typeop some xsd stringc

chromatogram typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000626

has super-classes
part_ofop some chromatogramc
has sub-classes
electromagnetic radiation chromatogramc, flow rate chromatogramc, ion current chromatogramc, pressure chromatogramc

chromatograph file formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002442

has super-classes
file formatc
has sub-classes
Andi-CHROM formatc

chromatographyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000054

This former purgatory term was made obsolete.

chromatography separationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002270

has super-classes
run attributec
has sub-classes
gas chromatography separationc, liquid chromatography separationc

chromosome namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002637

has super-classes
proteogenomics attributec
has value typeop some xsd stringc

chromosome strandc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002638

has super-classes
proteogenomics attributec
has value typeop some xsd stringc

Chymotrypsinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001306

has super-classes
cleavage agent namec
has regexpop some (?<=[FYWL])(?!P)c

Citius HRTc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001802

has super-classes
LECO instrument modelc

cleavage agent detailsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001044

has super-classes
search input detailsc
has sub-classes
cleavage agent namec

cleavage agent namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001045

has super-classes
cleavage agent detailsc
has sub-classes
2-iodobenzoatec, Arg-Cc, Asp-Nc, Asp-N_ambicc, CNBrc, Chymotrypsinc, Formic_acidc, Lys-Cc, Lys-C/Pc, Lys-Nc, LysargiNasec, NoEnzymec, PepsinAc, TrypChymoc, Trypsinc, Trypsin/Pc, V8-DEc, V8-Ec, glutamyl endopeptidasec, leukocyte elastasec, no cleavagec, proline endopeptidasec, unspecific cleavagec

Cleavage agent regular expressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001180

has super-classes
regular expressionc
part_ofop some cleavage agent detailsc
has sub-classes
((?<=D))|((?=D))c, (?<=K)c, (?<=K)(?!P)c, (?<=M)c, (?<=R)(?!P)c, (?<=W)c, (?<=[ALIV])(?c, (?<=[BDEZ])(?!P)c, (?<=[EZ])(?!P)c, (?<=[FL])c, (?<=[FYWLKR])(?!P)c, (?<=[FYWL])(?!P)c, (?<=[HKR]P)(?c, (?<=[KR])c, (?<=[KR])(?!P)c, (?<=[^E]E)c, (?=[BD])c, (?=[DE])c, (?=[KR])c

CLINPROTc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000708

has super-classes
Bruker softwarec
analysis softwarec
data processing softwarec

CLINPROT microc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000709

has super-classes
Bruker softwarec
analysis softwarec
data processing softwarec

CLINPROT robotc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000710

has super-classes
Bruker softwarec

ClinProToolsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000711

has super-classes
Bruker softwarec

Cliquidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000672

has super-classes
SCIEX softwarec

clustal alnc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001351

has super-classes
database file formatsc

cluster identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002407

has super-classes
protein cluster identification attributec
has value typeop some xsd intc

cluster ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000358

This child of the former purgatory term ion chemical type was made obsolete.

CNBrc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001307

has super-classes
cleavage agent namec
has regexpop some (?<=M)c

co-authorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002036

has super-classes
contact rolec

co-eluting ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001241

has super-classes
product ion attributec

coated glass platec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001940

has super-classes
sample plate typec

coefficient of variationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001883

has super-classes
transition validation attributec
has value typeop some xsd floatc

Collision cell exit potentialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001944

has super-classes
precursor activation attributec
has value typeop some xsd floatc
has_unitsop some u o 0000218c

collision energyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000045

has super-classes
precursor activation attributec
has_unitsop some u o 0000266c
has value typeop some xsd floatc
has sub-classes
collision energy ramp endc, collision energy ramp startc

collision energy ramp endc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002014

has super-classes
collision energyc
has_unitsop some u o 0000266c
has value typeop some xsd floatc

collision energy ramp startc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002013

has super-classes
collision energyc
has value typeop some xsd floatc
has_unitsop some u o 0000266c

collision gasc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000419

has super-classes
precursor activation attributec
has value typeop some xsd stringc

collision gas pressurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000869

has super-classes
precursor activation attributec
has value typeop some xsd floatc
has_unitsop some u o 0000110c

collision quadrupolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000275

has super-classes
ion optics typec

collision-induced dissociationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000133

has super-classes
dissociation methodc
has sub-classes
beam-type collision-induced dissociationc, supplemental collision-induced dissociationc, trap-type collision-induced dissociationc

collisional cross sectional areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002954

has super-classes
molecular entity propertyc
has value typeop some xsd doublec
has_unitsop some u o 0000324c

collisional excitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000418

This child of the former purgatory term ion reaction was made obsolete.

combined dissociation methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003181

has super-classes
dissociation methodc
has sub-classes
electron-transfer/collision-induced dissociationc, electron-transfer/higher-energy collision dissociationc

combined FDRScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002125

This term was made obsolete because it was split into the more specific terms for PSM-level combined FDRScore (MS:1002356), distinct peptide-level combined FDRScore (MS:1002361), protein-level combined FDRScore (MS:1002366) and protein group-level combined FDRScore (MS:1002375).
has super-classes
PSM-level search engine specific statisticc
search engine specific scorec
has value typeop some xsd doublec

combined FDRScore for proteinsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002366

has super-classes
search engine specific score for proteinsc
has value typeop some xsd doublec
has_domainop some value greater than zero but less than or equal to onec

combined ms-ms + spectral library searchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002755

has super-classes
search typec

combined pmf + ms-ms searchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001584

has super-classes
search typec

Cometc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002251

has super-classes
analysis softwarec

Comet:deltacnc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002253

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

Comet:deltacnstarc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002254

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

Comet:expectation valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002257

has super-classes
search engine specific scorec
has value typeop some xsd doublec

Comet:matched ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002258

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd intc

Comet:sprankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002256

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

Comet:spscorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002255

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

Comet:total ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002259

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd intc

Comet:xcorrc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002252

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec
has_orderop some higher score betterc

command-line parametersc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001885

has super-classes
data processing parameterc
library provenance attributec
has value typeop some xsd stringc

Commentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001033

has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc

common search engine input parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002094

has super-classes
search engine input parameterc
has sub-classes
Calculate Probability Scoresc, No fixed modifications searchedc, No variable modifications searchedc, minimum number of enzymatic terminic

common software input parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002104

has super-classes
software input parameterc

compactc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002280

has super-classes
Bruker Daltonics micrOTOF seriesc

Compassc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000712

has super-classes
Bruker softwarec
analysis softwarec
data processing softwarec

Compass for HCT/esquirec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000713

has super-classes
Bruker softwarec
analysis softwarec
data processing softwarec

Compass for micrOTOFc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000714

has super-classes
Bruker softwarec
analysis softwarec
data processing softwarec

Compass OpenAccessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000715

has super-classes
Bruker softwarec
analysis softwarec
data processing softwarec

Compass Security Packc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000716

has super-classes
Bruker softwarec

CompassXportc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000717

has super-classes
Bruker softwarec
data processing softwarec

CompassXtractc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000718

has super-classes
Bruker softwarec
data processing softwarec

completion timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000747

has super-classes
data processing parameterc
has value typeop some xsd date timec

compound data typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002709

has sub-classes
list of typec

Compound Discovererc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002880

has super-classes
small molecule analysis softwarec

compound identification confidence code in MS-DIALc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003032

has super-classes
small molecule identification attributec
has value typeop some xsd stringc

compound identification confidence levelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002896

has super-classes
small molecule identification attributec
has value typeop some xsd stringc

cone voltagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000876

has super-classes
source attributec
has value typeop some xsd floatc
has_unitsop some u o 0000218c

confidence scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001193

has super-classes
peptide sequence-level identification statisticc
single protein identification statisticc
has value typeop some xsd doublec

confident distinct peptide sequencesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001098

has super-classes
protein-level identification attributec
has value typeop some xsd non negative integerc

confident peptide qualificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001099

has super-classes
protein-level identification attributec
has value typeop some xsd non negative integerc

confident peptide sequence numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001100

has super-classes
protein-level identification attributec
has value typeop some xsd non negative integerc

Conflictc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001023

has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc
has regexpop some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional commentc

consecutive reaction monitoringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000244

This former purgatory term was made obsolete.

consecutive reaction monitoringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000327

This term was made obsolete because it was replaced by consecutive reaction monitoring (MS:1000244).

consecutive reaction monitoring chromatogramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001474

This term was made obsolete because, by design, it can't be properly represented in mzML 1.1. CRM experiments must be represented in a spectrum-centric way.
has super-classes
ion current chromatogramc

consensus resultc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002315

has super-classes
spectrum identification result detailsc

consensus scoringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002492

has super-classes
special processingc

consensus spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003067

has super-classes
spectrum aggregation typec

consensusXMLc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002825

has super-classes
OpenMS file formatc

constantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000088

This child of the former purgatory term resolution type was made obsolete.

constant neutral gain scanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000324

This former purgatory term was made obsolete.

constant neutral gain spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000325

has super-classes
mass spectrumc

constant neutral loss scanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000323

This former purgatory term was made obsolete.

constant neutral loss spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000326

has super-classes
mass spectrumc

constant neutral mass lossc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000097

This former purgatory term was made obsolete.

constituent identification filec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003204

has super-classes
library provenance attributec
has value typeop some xsd stringc

constituent library filec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003205

has super-classes
library provenance attributec
has value typeop some xsd stringc

constituent spectrum filec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003203

has super-classes
library provenance attributec
has value typeop some xsd stringc

contact addressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000587

has super-classes
contact attributec
has value typeop some xsd stringc

contact affiliationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000590

has super-classes
contact attributec
has value typeop some xsd stringc

contact attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000585

has super-classes
object attributec
part_ofop some Proteomics Standards Initiative Mass Spectrometry Vocabulariesc
has sub-classes
contact URLc, contact addressc, contact affiliationc, contact emailc, contact fax numberc, contact namec, contact phone numberc, contact rolec, contact toll-free phone numberc, role typec

contact emailc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000589

has super-classes
contact attributec
has value typeop some xsd stringc

contact fax numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001756

has super-classes
contact attributec
has value typeop some xsd stringc

contact namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000586

has super-classes
contact attributec
has value typeop some xsd stringc

contact phone numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001755

has super-classes
contact attributec
has value typeop some xsd stringc

contact rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002033

has super-classes
contact attributec
has sub-classes
co-authorc, dataset submitterc, first authorc, lab headc, senior authorc

contact toll-free phone numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001757

has super-classes
contact attributec
has value typeop some xsd stringc

contact URLc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000588

has super-classes
contact attributec
has value typeop some xsd stringc

continuous flow fast atom bombardmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000055

has super-classes
inlet typec

Conventional ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000359

This child of the former purgatory term ion chemical type was made obsolete.

Conversionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000016

has super-classes
PEFF file header section termc
has value typeop some xsd stringc

conversion dynodec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000346

has super-classes
detector typec
has sub-classes
conversion dynode electron multiplierc, conversion dynode photomultiplierc

conversion dynode electron multiplierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000108

has super-classes
conversion dynodec

conversion dynode photomultiplierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000109

has super-classes
conversion dynodec

conversion softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002333

has super-classes
data processing softwarec
has sub-classes
PRIDE Converter2c, ProConc, python-psimsc

Conversion to dtac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000741

has super-classes
file format conversionc

Conversion to mzDatac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000546

has super-classes
file format conversionc

Conversion to mzMLc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000544

has super-classes
file format conversionc

Conversion to mzMLbc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002839

has super-classes
file format conversionc

Conversion to mzXMLc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000545

has super-classes
file format conversionc

convex hull baseline reductionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001995

has super-classes
baseline reductionc

copyright noticec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003198

has super-classes
spectral library attributec
has value typeop some xsd stringc

count of identified clustersc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002406

has super-classes
protein group-level result list attributec
has value typeop some xsd intc

count of identified proteinsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002404

has super-classes
protein-level result list attributec
has value typeop some xsd intc

counts per secondc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000814

has super-classes
intensity unitc

counts reportingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002122

has super-classes
feature list attributec

CPTAC accession numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003031

has super-classes
external reference identifierc
has value typeop some xsd stringc

Crc64c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001024

has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc

CRM spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000581

has super-classes
mass spectrumc

cross-link acceptorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002510

has super-classes
cross-linking attributec
has value typeop some xsd stringc

cross-link donorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002509

has super-classes
cross-linking attributec
has value typeop some xsd stringc

cross-link spectrum identification itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002511

has super-classes
cross-linking attributec
has value typeop some xsd intc

cross-linked peptide ion interpretation formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003105

has super-classes
ion interpretation formatc

cross-linking attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002508

has super-classes
single identification result attributec
has sub-classes
cross-link acceptorc, cross-link donorc, cross-link spectrum identification itemc

cross-linking result detailsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002675

has super-classes
part_ofop some spectrum interpretationc
has sub-classes
interaction score derived from cross-linkingc

cross-linking scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002512

has super-classes
search engine specific score for proteinsc
has value typeop some xsd doublec

cross-linking searchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002494

has super-classes
special processingc

crushed crystal MALDI sample preparationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001988

has super-classes
matrix application typec

curator keywordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001926

has super-classes
external reference keywordc
has value typeop some xsd stringc

custom unreleased software toolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000799

has super-classes
softwarec
has value typeop some xsd stringc

customizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000032

has super-classes
instrument attributec
has value typeop some xsd stringc

cyclotronc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000288

has super-classes
mass analyzer typec

cyclotron motionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000305

This child of the former purgatory term m/z Separation Method was made obsolete.

D-Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002536

has super-classes
PTM localization PSM-level statisticc
has regexpop some regular expression for modification localization scoringc
has value typeop some xsd stringc

D-Score thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002557

has super-classes
PTM localization score thresholdc
has value typeop some xsd doublec

daltonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000212

This term was made obsolete because it was redundant with the Unit Ontology term dalton (UO:0000221).

daly detectorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000110

has super-classes
detector typec

Data derived from previous datasetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002863

has super-classes
Experiment additional parameterc

Data Explorerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000536

has super-classes
Applied Biosystems softwarec
acquisition softwarec
analysis softwarec
data processing softwarec

data file checksum typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000561

has super-classes
part_ofop some source data filec
has sub-classes
MD5c, SHA-1c, SHA-256c

data file contentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000524

has super-classes
part_ofop some source data filec
has sub-classes
PDA spectrumc, absorption spectrumc, electromagnetic radiation chromatogramc, electromagnetic radiation spectrumc, emission spectrumc, ion current chromatogramc, mass spectrometry acquisition methodc, mass spectrumc

data filteringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001486

has super-classes
data processing actionc
has sub-classes
high intensity data point removalc, low intensity data point removalc

data independent acquisition from dissociation of full mass rangec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003227

has super-classes
mass spectrometry acquisition methodc
data-independent acquisitionc
dissociation of full mass rangec
ion mobility separationc

data independent acquisition from dissociation of full mass range after ion mobility separationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003226

has super-classes
mass spectrometry acquisition methodc
data-independent acquisitionc
ion mobility separationc

data independent acquisition from dissociation of scanning quadrupole across mass rangec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003228

has super-classes
mass spectrometry acquisition methodc
data-independent acquisitionc
dissociation of scanning quadrupole across a specified mass rangec

data independent acquisition from dissociation of sequential mass rangesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003224

has super-classes
mass spectrometry acquisition methodc
data-independent acquisitionc
dissociation of sequential mass rangesc

data independent acquisition from dissociation of sequential mass ranges after ion mobility separationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003225

has super-classes
mass spectrometry acquisition methodc
data-independent acquisitionc
dissociation of sequential mass rangesc
ion mobility separationc

data processing actionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000543

has super-classes
data transformationc
has sub-classes
adduct deconvolutionc, baseline reductionc, charge deconvolutionc, charge state calculationc, data filteringc, deisotopingc, intensity normalizationc, ion mobility deconvolutionc, m/z calibrationc, peak pickingc, precursor recalculationc, retention time alignmentc, smoothingc

data processing parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000630

has super-classes
part_ofop some spectrum generation informationc
has sub-classes
command-line parametersc, completion timec, data processing start timec, high intensity thresholdc, inclusive high intensity thresholdc, inclusive low intensity thresholdc, low intensity thresholdc

data processing softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001457

has super-classes
softwarec
has sub-classes
4000 Series Explorer Softwarec, 4700 Explorerc, 6300 Series Ion Trap Data Analysis Softwarec, ALEXc, ALEX123c, Analystc, BioAnalystc, BioToolsc, Bioworksc, CAMERAc, CLINPROTc, CLINPROT microc, ChromaTOF HRT softwarec, ChromaTOF softwarec, Compassc, Compass OpenAccessc, Compass for HCT/esquirec, Compass for micrOTOFc, CompassXportc, CompassXtractc, Data Explorerc, DataAnalysisc, Empowerc, FlexAnalysisc, GPS Explorerc, Genespring MSc, Greazyc, LIMSAc, LIQUIDc, LOBSTAHSc, LPPtigerc, LightSight Softwarec, LipiDexc, Lipid Data Analyzerc, Lipid-Proc, LipidBlastc, LipidFinderc, LipidHunterc, LipidMatchc, LipidQAc, LipidXplorerc, MALDI Solutionsc, MALDI Solutions LC-MALDIc, METLINc, MRMPilot Softwarec, MS-DIALc, MSDKc, MSnbasec, MZminec, Maltcmsc, MarkerView Softwarec, MassHunter BioConfirmc, MassHunter Mass Profilerc, MassHunter Metabolite IDc, MassHunter Qualitative Analysisc, MassHunter Quantitative Analysisc, MassLynxc, Mauic, MultiQuantc, MzStarc, MzWiffc, PEAKS Nodec, PEAKS Onlinec, PEAKS Studioc, PepFinderc, PinPointc, Pro BLASTc, Pro ICATc, Pro IDc, Pro Quantc, ProfileAnalysisc, ProteinLynx Global Serverc, ProteinPilot Softwarec, Proteiosc, ProteoWizard softwarec, Proteome Discovererc, QuantAnalysisc, ReAdWc, SCIEX TOF/TOF Series Explorer Softwarec, SCiLS Labc, SQIDc, Spectrum Mill for MassHunter Workstationc, TOPP softwarec, ThermoRawFileParserc, TissueView Softwarec, Trapperc, UNIFYc, Voyager Biospectrometry Workstation Systemc, XCMSc, Xcaliburc, conversion softwarec, flexImagingc, massWolfc, ms_deisotopec, mzRc, postprocessing softwarec, preprocessing softwarec, pymzMLc

data processing start timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002435

has super-classes
data processing parameterc
has value typeop some xsd date timec

data stored in databasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001107

has super-classes
intermediate analysis formatc

data transformationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000452

has super-classes
part_ofop some spectrum generation informationc
has sub-classes
data processing actionc, file format conversionc

data-dependent acquisitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003221

has super-classes
mass spectrometry acquisition method aspectc

data-independent acquisitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003215

has super-classes
mass spectrometry acquisition method aspectc
has sub-classes
data independent acquisition from dissociation of full mass rangec, data independent acquisition from dissociation of full mass range after ion mobility separationc, data independent acquisition from dissociation of scanning quadrupole across mass rangec, data independent acquisition from dissociation of sequential mass rangesc, data independent acquisition from dissociation of sequential mass ranges after ion mobility separationc, selected ion monitoringc, selected reaction monitoringc

DataAnalysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000719

has super-classes
Bruker softwarec
analysis softwarec
data processing softwarec

database ESTc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001178

has super-classes
database type nucleotidec

database file formatsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001347

has super-classes
search database detailsc
has sub-classes
ASN.1c, FASTA formatc, NBRF PIRc, NCBI *.p*c, NIST MSP formatc, PEFF formatc, UniProtKB XML sequence formatc, UniProtKB text sequence formatc, clustal alnc, embl emc

database filteringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001019

has super-classes
search database detailsc
has sub-classes
Sequence database filter typesc, Sequence database filtersc

database IPI_arabidopsisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001290

has super-classes
database namec

database IPI_chickenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001288

has super-classes
database namec

database IPI_cowc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001289

has super-classes
database namec

database IPI_humanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001142

has super-classes
database namec

database IPI_mousec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001285

has super-classes
database namec

database IPI_ratc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001286

has super-classes
database namec

database IPI_zebrafishc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001287

has super-classes
database namec

database local file pathc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001014

has super-classes
search database detailsc

database namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001013

has super-classes
search database detailsc
has sub-classes
database IPI_arabidopsisc, database IPI_chickenc, database IPI_cowc, database IPI_humanc, database IPI_mousec, database IPI_ratc, database IPI_zebrafishc, database UniProtKBc, database nrc

database nrc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001084

has super-classes
database namec

database original uric back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001015

has super-classes
search database detailsc
has value typeop some xsd any u r ic

database release datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001017

has super-classes
search database detailsc

database sequence detailsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001342

has super-classes
search database detailsc
has sub-classes
AA sequencec, NA sequencec, molecule taxonomyc, protein descriptionc

database sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001012

has super-classes
search database detailsc
has value typeop some xsd stringc
has sub-classes
DB source EBIc, DB source NCBIc, DB source UniProtc

database typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001018

has super-classes
search database detailsc
has sub-classes
database type amino acidc, database type nucleotidec

database type amino acidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001073

has super-classes
database typec
has sub-classes
database type spectral libraryc

database type nucleotidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001079

has super-classes
database typec
has sub-classes
database ESTc

database type spectral libraryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002752

has super-classes
database type amino acidc

database UniProtKBc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002126

has super-classes
database namec
has sub-classes
database UniProtKB/Swiss-Protc, database UniProtKB/TrEMBLc

database UniProtKB/Swiss-Protc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001104

has super-classes
database UniProtKBc

database UniProtKB/TrEMBLc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002060

has super-classes
database UniProtKBc

database versionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001016

has super-classes
search database detailsc
has value typeop some xsd stringc

DatabaseDescriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000020

has super-classes
PEFF file header section termc
has value typeop some xsd stringc

Dataset FTP locationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002852

has super-classes
Experiment additional parameterc
has value typeop some xsd stringc

dataset submitterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002037

has super-classes
contact rolec

Dataset with its publication pendingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002858

has super-classes
Experiment additional parameterc

Dataset with no associated published manuscriptc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002853

has super-classes
Experiment additional parameterc

date / time search performedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001035

has super-classes
search statisticsc

DB accession filter stringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001514

has super-classes
Sequence database filtersc
has value typeop some xsd stringc

DB composition only decoyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001453

has super-classes
decoy DB detailsc

DB composition target+decoyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001197

has super-classes
decoy DB detailsc

DB filter on accession numbersc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001021

has super-classes
Sequence database filter typesc

DB filter on sequence patternc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001027

has super-classes
Sequence database filter typesc

DB filter taxonomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001020

has super-classes
Sequence database filter typesc

DB MW filterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001022

has super-classes
Sequence database filter typesc

DB MW filter maximumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001201

has super-classes
Sequence database filtersc
has_unitsop some u o 0000221c
has value typeop some xsd doublec
has_unitsop some u o 0000222c

DB MW filter minimumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001202

has super-classes
Sequence database filtersc
has value typeop some xsd doublec
has_unitsop some u o 0000222c
has_unitsop some u o 0000221c

DB PI filterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001023

has super-classes
Sequence database filter typesc

DB PI filter maximumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001203

has super-classes
Sequence database filtersc
has value typeop some xsd doublec

DB PI filter minimumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001204

has super-classes
Sequence database filtersc
has value typeop some xsd doublec

DB sequence filter patternc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001513

has super-classes
Sequence database filtersc
has value typeop some xsd stringc

DB source EBIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001252

has super-classes
database sourcec

DB source NCBIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001253

has super-classes
database sourcec

DB source UniProtc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001254

has super-classes
database sourcec

DbDatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000014

This term was obsoleted.
has super-classes
PEFF file header section termc

DbDescriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000010

has super-classes
PEFF file header section termc
has value typeop some xsd stringc

DBExporterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000754

has super-classes
TOPP softwarec

DBImporterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000755

has super-classes
TOPP softwarec

DbNamec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000008

has super-classes
PEFF file header section termc
has value typeop some xsd stringc

DbSourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000012

has super-classes
PEFF file header section termc
has value typeop some xsd stringc

DbUniqueIdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001001

This term was made obsolete because decided in Heidelberg 2018-04 that this is redundant.
has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc

DbVersionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000013

has super-classes
PEFF file header section termc
has value typeop some xsd stringc

de facto standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000899

has super-classes
standardc

de novo searchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001010

has super-classes
search typec

DeBunkerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001973

has super-classes
analysis softwarec

DeBunker:scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001974

has super-classes
PSM-level search engine specific statisticc
PTM localization PSM-level statisticc
has regexpop some regular expression for modification localization scoringc
has value typeop some xsd stringc

DeBunker:score thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002560

has super-classes
PTM localization score thresholdc
has value typeop some xsd doublec

declustering potentialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000875

has super-classes
source attributec
has value typeop some xsd floatc
has_unitsop some u o 0000218c

deconvoluted inverse reduced ion mobility arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003155

has super-classes
ion mobility arrayc
has value typeop some xsd floatc
has_unitsop some volt-second per square centimeterc

deconvoluted ion mobility arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003154

has super-classes
ion mobility arrayc
has_unitsop some u o 0000010c
has_unitsop some u o 0000028c
has value typeop some xsd floatc

deconvoluted ion mobility drift time arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003156

has super-classes
ion mobility arrayc
has value typeop some xsd floatc
has_unitsop some u o 0000028c
has_unitsop some u o 0000010c

Decoyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000011

has super-classes
PEFF file header section termc
has value typeop some xsd booleanc

decoy DB accession regexpc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001283

has super-classes
decoy DB detailsc
has value typeop some xsd stringc

decoy DB derived fromc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001284

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.
has super-classes
decoy DB detailsc

decoy DB detailsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001450

has super-classes
search database detailsc
has sub-classes
DB composition only decoyc, DB composition target+decoyc, decoy DB accession regexpc, decoy DB derived fromc, decoy DB generation algorithmc, decoy DB type randomizedc, decoy DB type reversec, decoy DB type shufflec

decoy DB from ESTc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001295

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from IPI_arabidopsisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001294

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from IPI_chickenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001298

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from IPI_cowc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001299

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from IPI_humanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001300

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from IPI_mousec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001293

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from IPI_ratc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001292

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from IPI_zebrafishc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001296

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from nrc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001291

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from UniProtKB/Swiss-Protc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001297

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB from UniProtKB/TrEMBLc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002061

This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices.

decoy DB generation algorithmc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001451

has super-classes
decoy DB detailsc
has value typeop some xsd stringc

decoy DB type randomizedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001196

has super-classes
decoy DB detailsc

decoy DB type reversec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001195

has super-classes
decoy DB detailsc

decoy DB type shufflec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001452

has super-classes
decoy DB detailsc

decoy peptidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002217

has super-classes
peptide sequence-level identification attributec
has value typeop some xsd booleanc

decoy spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003192

has super-classes
spectrum origin typec
has sub-classes
precursor shift decoy spectrumc, shuffle-and-reposition decoy spectrumc, unnatural peptidoform decoy spectrumc, unrelated species decoy spectrumc

decoy SRM transitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002008

has super-classes
SRM transition typec

decreasing m/z scanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000092

has super-classes
scan directionc

deisotopingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000033

has super-classes
data processing actionc

delayed extractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000246

has super-classes
ion optics typec

delta Mc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001976

has super-classes
spectrum identification result detailsc
has_unitsop some u o 0000187c
has_unitsop some u o 0000166c
has_unitsop some u o 0000221c
has value typeop some xsd doublec

delta m/zc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001975

has super-classes
spectrum identification result detailsc
has value typeop some xsd doublec
has_unitsop some u o 0000221c
has_unitsop some u o 0000166c
has_unitsop some u o 0000187c

DELTA plusAdvantagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000153

has super-classes
Thermo Finnigan instrument modelc

DELTAplusXPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000154

has super-classes
Thermo Finnigan instrument modelc

demultiplexed spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003075

has super-classes
spectrum origin typec

denominator data type attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002152

has super-classes
quantification object attributec

deoxyribonucleotidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003038

has super-classes
small moleculec

desorption electrospray ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002011

has super-classes
atmospheric pressure ionizationc

desorption ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000247

has super-classes
ionization typec
has sub-classes
desorption/ionization on siliconc, field desorptionc, laser desorption ionizationc, matrix-assisted laser desorption ionizationc, surface-assisted laser desorption ionizationc

desorption/ionization on siliconc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000387

has super-classes
desorption ionizationc

detectorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000453

has super-classes
part_ofop some instrumentc

detector acquisition modec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000027

has super-classes
part_ofop some detectorc
has sub-classes
analog-digital converterc, pulse countingc, time-digital converterc, transient recorderc

detector attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000481

has super-classes
part_ofop some detectorc
has sub-classes
detector potentialc, detector resolutionc, sampling frequencyc

detector potentialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002273

has super-classes
detector attributec
has value typeop some xsd floatc
has_unitsop some u o 0000218c

detector resolutionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000028

has super-classes
detector attributec
has value typeop some xsd floatc

detector typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000026

has super-classes
part_ofop some detectorc
has sub-classes
array detectorc, channeltronc, conversion dynodec, daly detectorc, dynodec, electron multiplierc, faraday cupc, fluorescence detectorc, focal plane collectorc, inductive detectorc, ion-to-photon detectorc, multi-collectorc, photomultiplierc, point collectorc, postacceleration detectorc

DFSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000640

has super-classes
Thermo Scientific instrument modelc

diagnostic ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000360

This child of the former purgatory term ion chemical type was made obsolete.

DiART quantitation analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002761

has super-classes
isobaric label quantitation analysisc

DiART reagentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002771

has super-classes
sample labelc
has sub-classes
DiART reagent 114c, DiART reagent 115c, DiART reagent 116c, DiART reagent 117c, DiART reagent 118c, DiART reagent 119c

DiART reagent 114c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002772

has super-classes
DiART reagentc

DiART reagent 115c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002773

has super-classes
DiART reagentc

DiART reagent 116c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002774

has super-classes
DiART reagentc

DiART reagent 117c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002775

has super-classes
DiART reagentc

DiART reagent 118c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002776

has super-classes
DiART reagentc

DiART reagent 119c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002777

has super-classes
DiART reagentc

Digital Object Identifier (DOI)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001922

has super-classes
external reference identifierc
has regexpop some regular expression for a digital object identifier (DOI)c
has value typeop some xsd stringc

DiLeu quantitation analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002762

has super-classes
isobaric label quantitation analysisc

DiLeu reagentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002778

has super-classes
sample labelc
has sub-classes
DiLeu reagent 115c, DiLeu reagent 116c, DiLeu reagent 117c, DiLeu reagent 118c

DiLeu reagent 115c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002779

has super-classes
DiLeu reagentc

DiLeu reagent 116c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002780

has super-classes
DiLeu reagentc

DiLeu reagent 117c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002781

has super-classes
DiLeu reagentc

DiLeu reagent 118c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002782

has super-classes
DiLeu reagentc

dilution series, concentration Xc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001816

has super-classes
study variable attributec
has value typeop some xsd doublec

dimeric ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000361

This child of the former purgatory term ion chemical type was made obsolete.

Dionex instrument modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000491

has super-classes
instrument modelc

direct inletc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000056

has super-classes
inlet typec

direct insertion probec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000248

has super-classes
inlet typec

direct liquid introductionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000249

has super-classes
inlet typec

DirecTagc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001586

has super-classes
analysis softwarec

Discoverer MSF formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001564

has super-classes
intermediate analysis formatc

dissociation methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000044

has super-classes
part_ofop some precursor activationc
has sub-classes
LIFTc, blackbody infrared radiative dissociationc, collision-induced dissociationc, combined dissociation methodc, electron capture dissociationc, electron transfer dissociationc, in-source collision-induced dissociationc, infrared multiphoton dissociationc, low-energy collision-induced dissociationc, photodissociationc, plasma desorptionc, post-source decayc, pulsed q dissociationc, surface-induced dissociationc, sustained off-resonance irradiationc

dissociation of full mass rangec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003216

has super-classes
mass spectrometry acquisition method aspectc
has sub-classes
data independent acquisition from dissociation of full mass rangec

dissociation of scanning quadrupole across a specified mass rangec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003217

has super-classes
mass spectrometry acquisition method aspectc
has sub-classes
data independent acquisition from dissociation of scanning quadrupole across mass rangec

dissociation of sequential mass rangesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003218

has super-classes
mass spectrometry acquisition method aspectc
has sub-classes
data independent acquisition from dissociation of sequential mass rangesc, data independent acquisition from dissociation of sequential mass ranges after ion mobility separationc

dissociative ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000388

has super-classes
ionization typec

distinct peptide sequencesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001097

has super-classes
protein-level identification attributec
has value typeop some xsd non negative integerc

distinct peptide-level combined FDRScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002361

has super-classes
search engine specific peptide sequence-level identification statisticc
search engine specific score for proteinsc
has value typeop some xsd doublec
has_domainop some value greater than zero but less than or equal to onec

distinct peptide-level FDRScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002360

has super-classes
search engine specific peptide sequence-level identification statisticc
search engine specific score for proteinsc
has_domainop some value greater than zero but less than or equal to onec
has value typeop some xsd doublec

distinct peptide-level q-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001868

has super-classes
peptide-level statistical thresholdc
has value typeop some xsd doublec
has_domainop some value between 0 and 1 inclusivec

distonic ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000362

This child of the former purgatory term ion chemical type was made obsolete.

distributed normalized spectral abundance factorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002548

has super-classes
quantification datatypec

DisulfideBondc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001031

has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc

Domainc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001025

has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc

domain rangec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002304

has super-classes
part_ofop some Proteomics Standards Initiative Mass Spectrometry Vocabulariesc
has sub-classes
value between 0 and 1 inclusivec, value between 0 and 1000 inclusivec, value greater than zeroc, value greater than zero but less than or equal to onec

double-focusing mass spectrometerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000289

This child of the former purgatory term mass spectrometer was made obsolete.

dpControlc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000720

has super-classes
Bruker softwarec
acquisition softwarec

dried droplet MALDI matrix preparationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000836

has super-classes
matrix application typec

DSQc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000634

has super-classes
Thermo Finnigan instrument modelc

DSQ IIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000641

has super-classes
Thermo Scientific instrument modelc

DTA formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000613

has super-classes
mass spectrometer file formatc

DTASelectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002598

has super-classes
analysis softwarec

DTASelect formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001464

has super-classes
intermediate analysis formatc

dwell timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000502

has super-classes
scan attributec
has_unitsop some u o 0000031c
has_unitsop some u o 0000010c
has value typeop some xsd floatc

dye-laserc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000852

has super-classes
laser typec

dynamic mass spectrometryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000306

This child of the former purgatory term mass spectrometer was made obsolete.

dynodec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000347

has super-classes
detector typec

e/2 mass spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000328

has super-classes
mass spectrumc

eight sample runc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001822

has super-classes
raw file attributec

einzel lensc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000307

has super-classes
ion optics typec

electric field strengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000308

has super-classes
ion optics attributec
has value typeop some xsd floatc
has_unitsop some u o 0000268c

electromagnetic radiation chromatogramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000811

has super-classes
data file contentc
chromatogram typec
has sub-classes
absorption chromatogramc, emission chromatogramc

electromagnetic radiation spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000804

has super-classes
data file contentc
spectrum typec

electron affinityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000213

This child of the former purgatory term ion attribute was made obsolete.
has super-classes
has value typeop some xsd floatc

electron capture dissociationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000250

has super-classes
dissociation methodc

electron energy obsoletec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000214

This former purgatory term was made obsolete.

electron ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000389

has super-classes
ionization typec

electron multiplierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000253

has super-classes
detector typec
has sub-classes
electron multiplier tubec

electron multiplier tubec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000111

has super-classes
electron multiplierc

electron transfer dissociationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000598

has super-classes
dissociation methodc

electron voltc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000137

This term was made obsolete because it was redundant with the Unit Ontology term electron volt (UO:0000266).

electron-induced excitation in organicsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000252

This child of the former purgatory term ion reaction was made obsolete.

electron-transfer/collision-induced dissociationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003182

has super-classes
combined dissociation methodc

electron-transfer/higher-energy collision dissociationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002631

has super-classes
combined dissociation methodc

Electronic Ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000072

This term was made obsolete because it was replaced by electron ionization (MS:1000389).

electrospray inletc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000057

has super-classes
inlet typec
has sub-classes
nanospray inletc

electrospray ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000073

has super-classes
ionization typec
has sub-classes
microelectrosprayc, nanoelectrosprayc

electrospray supply typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001941

has super-classes
part_ofop some sourcec
has sub-classes
fed supply electrosprayc, static supply electrosprayc

electrostatic energy analyzerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000254

has super-classes
mass analyzer typec

Element 2c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000646

has super-classes
Thermo Scientific instrument modelc

Element GDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000647

has super-classes
Thermo Scientific instrument modelc

Element XRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000645

has super-classes
Thermo Scientific instrument modelc

ELEMENT2c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000155

This former purgatory term was made obsolete.

elution timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000826

has super-classes
scan attributec
has value typeop some xsd floatc
has_unitsop some u o 0000010c
has_unitsop some u o 0000031c

embl emc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001352

has super-classes
database file formatsc

emission chromatogramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000813

has super-classes
electromagnetic radiation chromatogramc

emission spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000805

has super-classes
data file contentc
spectrum typec

emPAI valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001905

has super-classes
protein-level quantification datatypec
has value typeop some xsd doublec

empirical formulac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000865

has super-classes
chemical formulac
has value typeop some xsd stringc

Empowerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001795

has super-classes
Waters softwarec
analysis softwarec
data processing softwarec

emulsionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000047

has super-classes
sample statec

energy unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000046

This term was made obsolete because it was redundant with the Unit Ontology term energy unit (UO:0000111).
has super-classes
u o 0000000

enhanced multiply charged spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000789

has super-classes
MS1 spectrumc

enhanced resolution scanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000791

This term was made obsolete because it was merged with zoom scan (MS:1000497).

enium ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000363

This child of the former purgatory term ion chemical type was made obsolete.

EPIFANYc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003118

has super-classes
TOPP softwarec
analysis softwarec

EPIFANY:Protein posterior probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003119

has super-classes
search engine specific score for proteinsc
has value typeop some xsd doublec

error on absolute quantityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001138

has super-classes
quantification datatypec
has value typeop some xsd doublec

error on peptide areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001131

has super-classes
peptide-level quantification datatypec
has value typeop some xsd doublec

error on peptide ratioc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001133

has super-classes
peptide-level quantification datatypec
has value typeop some xsd doublec

error on protein ratioc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001135

has super-classes
protein-level quantification datatypec
has value typeop some xsd doublec

esquire 4000c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000156

has super-classes
Bruker Daltonics esquire seriesc

esquire 6000c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000157

has super-classes
Bruker Daltonics esquire seriesc

esquireControlc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000721

has super-classes
Bruker softwarec
acquisition softwarec

EVc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001008

has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc

even-electron ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000251

This child of the former purgatory term ion chemical type was made obsolete.

EVOQ Elitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002297

has super-classes
Bruker Daltonics EVOQ seriesc

EVOQ Qubec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002298

has super-classes
Bruker Daltonics EVOQ seriesc

exact massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000215

This child of the former purgatory term ion attribute was made obsolete.
has super-classes
has_unitsop some u o 0000002c
has value typeop some xsd floatc

Exactivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000649

has super-classes
Thermo Scientific instrument modelc

Exactive Plusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002526

has super-classes
Thermo Scientific instrument modelc

excludes supersede includesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000921

has super-classes
target inclusion exclusion priorityc

Expect valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001192

has super-classes
peptide sequence-level identification statisticc
single protein identification statisticc
has value typeop some xsd doublec

Experiment additional parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002844

has super-classes
spectrum generation informationc
has sub-classes
Accepted manuscriptc, Associated file URIc, Data derived from previous datasetc, Dataset FTP locationc, Dataset with its publication pendingc, Dataset with no associated published manuscriptc, Experimental information has been refined since this experiment was originally made publicly availablec, No PTMs are included in the datasetc, Non peer-reviewed datasetc, Original datac, Peer-reviewed datasetc, ProteomeCentral dataset URIc, Referencec, Reprocessed complete datasetc, Reprocessed subset datasetc, Supported dataset by repositoryc, Unsupported dataset by repositoryc, supported by repository but incomplete data and/or metadatac

experiment namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002120

has super-classes
quantification object attributec

experimental condition 'case'c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001810

has super-classes
study variable attributec

experimental condition 'control'c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001811

has super-classes
study variable attributec

experimental condition 'disease'c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001812

has super-classes
study variable attributec

experimental condition 'healthy'c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001813

has super-classes
study variable attributec

Experimental information has been refined since this experiment was originally made publicly availablec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002867

has super-classes
Experiment additional parameterc

experimental precursor monoisotopic m/zc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003208

has super-classes
ion selection attributec
has_unitsop some m/zc
has value typeop some xsd floatc

explorerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000158

has super-classes
IonSpec instrument modelc

exponentialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000094

has super-classes
scan lawc

external array lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002843

has super-classes
external reference datac
has_unitsop some u o 0000189c
has value typeop some xsd non negative integerc

external HDF5 datasetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002841

has super-classes
external reference datac
has value typeop some xsd stringc

external offsetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002842

has super-classes
external reference datac
has_unitsop some u o 0000189c
has value typeop some xsd non negative integerc

external reference datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002840

has super-classes
part_ofop some Proteomics Standards Initiative Mass Spectrometry Vocabulariesc
has sub-classes
external HDF5 datasetc, external array lengthc, external offsetc, external reference identifierc, external reference keywordc

external reference identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000878

has super-classes
external reference datac
has sub-classes
CPTAC accession numberc, Digital Object Identifier (DOI)c, MassIVE dataset URIc, MassIVE dataset identifierc, PASSEL experiment URIc, PASSEL transition group browser URIc, PRIDE experiment URIc, PRIDE project URIc, Panorama Public dataset URIc, Panorama Public dataset identifierc, PeptideAtlas dataset URIc, ProteomeXchange accession numberc, ProteomeXchange accession number version numberc, ProteomeXchange dataset identifier reanalysis numberc, ProteomeXchange project tagc, PubMed identifierc, Tranche file hashc, Tranche project hashc, iProX dataset URIc, iProX dataset identifierc, jPOST dataset URIc, jPOST dataset identifierc

external reference keywordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001923

has super-classes
external reference datac
has value typeop some xsd stringc
has sub-classes
curator keywordc, journal article keywordc, submitter keywordc

FAIMS compensation voltagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001581

has super-classes
ion mobility attributec
has_unitsop some u o 0000218c
has value typeop some xsd doublec

false localization ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002380

has super-classes
spectrum identification result detailsc
has value typeop some xsd doublec

family member proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001592

has super-classes
protein group or subset relationshipc
has value typeop some xsd stringc

faraday cupc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000112

has super-classes
detector typec

fast atom bombardment ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000074

has super-classes
ionization typec

fast evaporation MALDI sample preparationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001989

has super-classes
matrix application typec

fast ion bombardmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000446

has super-classes
ionization typec

FASTA formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001348

has super-classes
database file formatsc

FDRScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001874

This term was made obsolete because it was split into the more specific terms for PSM-level FDRScore (1002355), distinct peptide-level FDRScore (MS:1002360), protein-level FDRScore (MS:1002365) and protein group-level FDRScore (MS:1002374).
has super-classes
PSM-level search engine specific statisticc
search engine specific scorec
has value typeop some xsd doublec

FDRScore for proteinsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002365

has super-classes
search engine specific score for proteinsc
has value typeop some xsd doublec
has_domainop some value greater than zero but less than or equal to onec

feature attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001828

has super-classes
quantification object attributec
has sub-classes
SRM transition IDc, spectral count featurec

feature formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002900

has super-classes
mass spectrometer file formatc

feature list attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001825

has super-classes
quantification object attributec
has sub-classes
counts reportingc, mass trace reporting: polygonsc, mass trace reporting: rectanglesc

feature-level quantification datatypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002735

has super-classes
quantification datatypec
has sub-classes
LC-MS feature intensityc, LC-MS feature volumec, MS1 feature areac, MS1 feature maximum intensityc, MaxQuant:feature intensityc, Progenesis:feature intensityc, XCMS:areac, XCMS:intfc, XCMS:intoc, XCMS:maxoc, sum of MatchedFeature valuesc

featureXMLc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002824

has super-classes
OpenMS file formatc

fed supply electrosprayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001943

has super-classes
electrospray supply typec

field desorptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000257

has super-classes
desorption ionizationc

field ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000258

has super-classes
ionization typec

field-free regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000216

has super-classes
ion optics attributec

file formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001459

has super-classes
part_ofop some Proteomics Standards Initiative Mass Spectrometry Vocabulariesc
has sub-classes
OpenMS file formatc, chromatograph file formatc, identification file formatc, intermediate analysis formatc, mass spectrometer file formatc, method file formatc, quality control data formatc, quantification file formatc, tab delimited text formatc

file format conversionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000530

has super-classes
data transformationc
has sub-classes
Conversion to dtac, Conversion to mzDatac, Conversion to mzMLc, Conversion to mzMLbc, Conversion to mzXMLc

FileConverterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000756

has super-classes
TOPP softwarec

FileFilterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000757

has super-classes
TOPP softwarec

FileMergerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000758

has super-classes
TOPP softwarec

filter stringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000512

has super-classes
scan attributec
has value typeop some xsd stringc

final MS exponentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000024

has super-classes
mass analyzer attributec
has value typeop some xsd intc

final PSM listc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002439

has super-classes
spectrum identification list result detailsc

FindPairsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002063

has super-classes
quantitation software namec

Finnigan MAT instrument modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000493

has super-classes
Thermo Fisher Scientific instrument modelc
has sub-classes
MAT253c, MAT900XPc, MAT900XP Trapc, MAT95XPc, MAT95XP Trapc, SSQ 7000c, TSQc, TSQ 7000c

first authorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002034

has super-classes
contact rolec

first column elution timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002082

has super-classes
scan attributec
has value typeop some xsd floatc
has_unitsop some u o 0000010c
has_unitsop some u o 0000031c

first stability regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000309

has super-classes
ion optics typec

Fixed modificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003021

has super-classes
modification parametersc
named element in mzIdentMLc

FlexAnalysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000535

has super-classes
Bruker softwarec
analysis softwarec
data processing softwarec

FlexControlc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000540

has super-classes
Bruker softwarec
acquisition softwarec

flexImagingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000722

has super-classes
Bruker softwarec
analysis softwarec
data processing softwarec

flow injection analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000058

has super-classes
inlet typec

flow rate arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000820

has super-classes
binary data arrayc
has_unitsop some u o 0000271c

flow rate chromatogramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003020

has super-classes
chromatogram typec

flowing afterglowc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000255

has super-classes
ionization typec

fluorescence detectorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002308

has super-classes
detector typec
has sub-classes
Acquity UPLC FLRc

focal plane arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000113

has super-classes
focal plane collectorc

focal plane collectorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000348

has super-classes
detector typec
has sub-classes
focal plane arrayc

focus diameter xc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000844

has super-classes
laser attributec
has_unitsop some u o 0000017c
has value typeop some xsd floatc

focus diameter yc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000845

has super-classes
laser attributec
has value typeop some xsd floatc
has_unitsop some u o 0000017c

Formic_acidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001308

has super-classes
cleavage agent namec
has regexpop some ((?<=D))|((?=D))c

four sample runc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001821

has super-classes
raw file attributec

fourier transform ion cyclotron resonance mass spectrometerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000079

has super-classes
mass analyzer typec

fraction identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000858

has super-classes
run attributec
has value typeop some xsd stringc

frag: a ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001229

has super-classes
fragmentation ion typec

frag: a ion - H2Oc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001234

has super-classes
fragmentation ion typec

frag: a ion - NH3c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001235

has super-classes
fragmentation ion typec

frag: b ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001224

has super-classes
fragmentation ion typec

frag: b ion - H2Oc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001222

has super-classes
fragmentation ion typec

frag: b ion - NH3c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001232

has super-classes
fragmentation ion typec

frag: c ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001231

has super-classes
fragmentation ion typec

frag: c ion - H2Oc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001515

has super-classes
fragmentation ion typec

frag: c ion - NH3c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001516

has super-classes
fragmentation ion typec

frag: d ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001236

has super-classes
fragmentation ion typec

frag: immonium ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001239

has super-classes
fragmentation ion typec

frag: internal ya ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001366

has super-classes
fragmentation ion typec

frag: internal yb ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001365

has super-classes
fragmentation ion typec

frag: isobaric label ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002695

has super-classes
fragmentation ion typec

frag: iTRAQ 4plex reporter ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002668

has super-classes
fragmentation ion typec
has value typeop some xsd intc

frag: iTRAQ 8plex reporter ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002669

has super-classes
fragmentation ion typec
has value typeop some xsd intc

frag: precursor ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001523

has super-classes
fragmentation ion typec

frag: precursor ion - H2Oc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001521

has super-classes
fragmentation ion typec

frag: precursor ion - NH3c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001522

has super-classes
fragmentation ion typec

frag: TMT ETD reporter ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002671

has super-classes
fragmentation ion typec
has value typeop some xsd stringc

frag: TMT reporter ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002670

has super-classes
fragmentation ion typec
has value typeop some xsd stringc

frag: v ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001237

has super-classes
fragmentation ion typec

frag: w ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001238

has super-classes
fragmentation ion typec

frag: x ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001228

has super-classes
fragmentation ion typec

frag: x ion - H2Oc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001519

has super-classes
fragmentation ion typec

frag: x ion - NH3c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001520

has super-classes
fragmentation ion typec

frag: y ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001220

has super-classes
fragmentation ion typec

frag: y ion - H2Oc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001223

has super-classes
fragmentation ion typec

frag: y ion - NH3c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001233

has super-classes
fragmentation ion typec

frag: z ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001230

has super-classes
fragmentation ion typec

frag: z ion - H2Oc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001517

has super-classes
fragmentation ion typec

frag: z ion - NH3c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001518

has super-classes
fragmentation ion typec

frag: z+1 ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001367

has super-classes
fragmentation ion typec

frag: z+2 ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001368

has super-classes
fragmentation ion typec

fragment ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000364

This term was made obsolete because it was replaced by product ion (MS:1000342).

fragment mass type averagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001255

has super-classes
mass type settingsc

fragment mass type monoc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001256

has super-classes
mass type settingsc

fragment neutral lossc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001524

has super-classes
peptide modification detailsc
has_unitsop some u o 0000221c
has value typeop some xsd doublec

fragmentation ion typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002307

has super-classes
product ion attributec
has sub-classes
frag: TMT ETD reporter ionc, frag: TMT reporter ionc, frag: a ionc, frag: a ion - H2Oc, frag: a ion - NH3c, frag: b ionc, frag: b ion - H2Oc, frag: b ion - NH3c, frag: c ionc, frag: c ion - H2Oc, frag: c ion - NH3c, frag: d ionc, frag: iTRAQ 4plex reporter ionc, frag: iTRAQ 8plex reporter ionc, frag: immonium ionc, frag: internal ya ionc, frag: internal yb ionc, frag: isobaric label ionc, frag: precursor ionc, frag: precursor ion - H2Oc, frag: precursor ion - NH3c, frag: v ionc, frag: w ionc, frag: x ionc, frag: x ion - H2Oc, frag: x ion - NH3c, frag: y ionc, frag: y ion - H2Oc, frag: y ion - NH3c, frag: z ionc, frag: z ion - H2Oc, frag: z ion - NH3c, frag: z+1 ionc, frag: z+2 ionc, secondary isotope peakc

fragmentation scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002890

has super-classes
small molecule confidence measurec
has value typeop some xsd floatc

free electron laserc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000853

has super-classes
laser typec

fringing fieldc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000310

has super-classes
ion optics typec

full scanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000498

This former purgatory term was made obsolete.

full width at half-maximumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000086

has super-classes
resolution measurement methodc

gas chromatography separationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002272

has super-classes
chromatography separationc

gas laserc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000850

has super-classes
laser typec

gaseous sample statec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000048

has super-classes
sample statec

Gaussian smoothingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000784

has super-classes
smoothingc

GC IsoLinkc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000648

has super-classes
Thermo Scientific instrument modelc

GC Quantumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000558

has super-classes
Thermo Finnigan instrument modelc

GCMS-QP2010SEc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003152

has super-classes
Shimadzu Scientific Instruments instrument modelc

GCTc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000159

has super-classes
Waters instrument modelc

GCT Premierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001770

has super-classes
Waters instrument modelc

Gel image file URIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002860

has super-classes
Associated file URIc
has value typeop some xsd stringc

gene namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000934

has super-classes
protein attributec
has value typeop some xsd stringc

GeneralCommentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000021

has super-classes
PEFF file header section termc
has value typeop some xsd stringc

generic experimental conditionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001814

has super-classes
study variable attributec
has value typeop some xsd stringc

Genespring MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000684

has super-classes
Agilent softwarec
analysis softwarec
data processing softwarec

GENOLINKc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000723

has super-classes
Bruker softwarec

genome reference versionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002644

has super-classes
proteogenomics attributec
has value typeop some xsd stringc

GenoToolsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000724

has super-classes
Bruker softwarec

global FLRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002691

has super-classes
PTM localization result list statisticc

glow discharge ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000259

has super-classes
ionization typec

glutamyl endopeptidasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001917

has super-classes
cleavage agent namec
has regexpop some (?<=[^E]E)c

glycan ion interpretation formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003106

has super-classes
ion interpretation formatc

glyco-TMT quantitation analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002757

has super-classes
isobaric label quantitation analysisc

GNamec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001005

has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc

GOc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001018

has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc

GPS Explorerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000661

has super-classes
SCIEX softwarec
acquisition softwarec
analysis softwarec
data processing softwarec

Greazyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002970

has super-classes
data processing softwarec
lipidomics analysis softwarec

greylagc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001461

has super-classes
analysis softwarec

group member with undefined relationship OR ortholog proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001593

has super-classes
protein group or subset relationshipc

group PSMs by sequencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002496

has super-classes
identification parameterc

group PSMs by sequence with modificationsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002497

has super-classes
identification parameterc

group PSMs by sequence with modifications and chargec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002498

has super-classes
identification parameterc

group representativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002403

has super-classes
protein group or subset relationshipc

H-PINS retention time normalization standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000902

has super-classes
retention time normalization standardc

H-Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001986

has super-classes
PTM localization PSM-level statisticc
has value typeop some xsd stringc
has regexpop some regular expression for modification localization scoringc

H-Score thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002559

has super-classes
PTM localization score thresholdc
has value typeop some xsd doublec

H2O neutral lossc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002455

This term was obsoleted because it should be replaced by MS:1000336 with value H2O.
has super-classes
neutral lossc
ion series considered in searchc

H3PO4 neutral lossc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002457

This term was obsoleted because it should be replaced by MS:1000336 with value H3PO4.
has super-classes
neutral lossc
ion series considered in searchc

HasAnnotationIdentifiersc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000024

has super-classes
PEFF file header section termc
has value typeop some xsd stringc

HCTc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000160

has super-classes
Bruker Daltonics HCT Seriesc

HCTcontrolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000725

has super-classes
Bruker softwarec
acquisition softwarec

HCTplusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000161

has super-classes
Bruker Daltonics HCT Seriesc

HCTultrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000698

has super-classes
Bruker Daltonics HCT Seriesc

HCTultra ETD IIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000700

has super-classes
Bruker Daltonics HCT Seriesc

HCTultra PTMc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000699

has super-classes
Bruker Daltonics HCT Seriesc

heavy labeled peptidoformc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000891

has super-classes
peptidoform labeling statec

height peak pickingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000802

has super-classes
peak pickingc

heterolytic cleavagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000420

This child of the former purgatory term ion reaction was made obsolete.

high energy collisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000421

This child of the former purgatory term ion reaction was made obsolete.

high intensity data point removalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000746

has super-classes
data filteringc

high intensity thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000631

has super-classes
data processing parameterc
has_unitsop some number of detector countsc
has_unitsop some counts per secondc
has_unitsop some u o 0000269c
has_unitsop some percent of base peak times 100c
has_unitsop some percent of base peakc
has value typeop some xsd floatc

high-field asymmetric waveform ion mobility spectrometryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000256

This child of the former purgatory term mass spectrometer was made obsolete.

higher energy beam-type collision-induced dissociationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002481

has super-classes
beam-type collision-induced dissociationc

higher score betterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002108

has super-classes
part_ofop some search engine specific scorec

highest observed m/zc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000527

has super-classes
chromatogram attributec
spectrum propertyc
has_unitsop some m/zc
has value typeop some xsd floatc

highest observed wavelengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000618

has super-classes
chromatogram attributec
spectrum propertyc
has_unitsop some u o 0000018c
has value typeop some xsd floatc

HiRes ESIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000162

has super-classes
IonSpec instrument modelc

HiRes MALDIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000163

has super-classes
IonSpec instrument modelc

Hitachi instrument modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000488

has super-classes
instrument modelc

homolytic cleavagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000423

This child of the former purgatory term ion reaction was made obsolete.

hr-ms compound identification confidence levelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002955

has super-classes
small molecule identification attributec
has value typeop some xsd stringc

hybrid mass spectrometerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000290

This child of the former purgatory term mass spectrometer was made obsolete.

hydrazideTMT quantitation analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002759

has super-classes
isobaric label quantitation analysisc

hydrogen/deuterium exchangec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000424

This child of the former purgatory term ion reaction was made obsolete.

HyStarc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000817

has super-classes
Bruker softwarec

i3tmsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003013

has super-classes
analysis softwarec

ICAT heavy reagentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002604

has super-classes
ICAT reagentc

ICAT light reagentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002605

has super-classes
ICAT reagentc

ICAT reagentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002603

has super-classes
sample labelc
has sub-classes
ICAT heavy reagentc, ICAT light reagentc

ICPL reagentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002606

has super-classes
sample labelc
has sub-classes
ICPL reagent 0c, ICPL reagent 10c, ICPL reagent 4c, ICPL reagent 6c

ICPL reagent 0c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002607

has super-classes
ICPL reagentc

ICPL reagent 10c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002610

has super-classes
ICPL reagentc

ICPL reagent 4c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002608

has super-classes
ICPL reagentc

ICPL reagent 6c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002609

has super-classes
ICPL reagentc

IDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001026

has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc

identification attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002693

has super-classes
analysis attributec
has sub-classes
result list attributec, single identification result attributec

identification file attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002127

has super-classes
quantification object attributec

identification file formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002130

has super-classes
file formatc
has sub-classes
PRIDE XMLc

identification parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002658

has super-classes
part_ofop some spectrum interpretationc
has sub-classes
group PSMs by sequencec, group PSMs by sequence with modificationsc, group PSMs by sequence with modifications and chargec

IdentiPyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002987

has super-classes
analysis softwarec

IdentiPy:hyperscorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002989

has super-classes
search engine specific scorec
has_orderop some higher score betterc
has value typeop some xsd doublec

IdentiPy:RHNSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002988

has super-classes
search engine specific scorec
has_orderop some higher score betterc
has value typeop some xsd doublec

IdentityE Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001569

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

IdentityE XML formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001565

has super-classes
intermediate analysis formatc

idXMLc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002823

has super-classes
OpenMS file formatc

iMonDBc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003165

has super-classes
analysis softwarec

impactc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002077

has super-classes
Bruker Daltonics micrOTOF seriesc

impact anglec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000849

has super-classes
laser attributec
has value typeop some xsd floatc
has_unitsop some u o 0000185c

impact HDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002667

has super-classes
Bruker Daltonics micrOTOF seriesc

impact IIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002666

has super-classes
Bruker Daltonics micrOTOF seriesc

in-gel digestionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002985

has super-classes
sample preparationc

in-solution digestionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002986

has super-classes
sample preparationc

in-source collision-induced dissociationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001880

has super-classes
dissociation methodc

InChIKeyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002894

has super-classes
spectrum identification result detailsc
has value typeop some xsd stringc

includes supersede excludesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000920

has super-classes
target inclusion exclusion priorityc

inclusive high intensity thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000788

has super-classes
data processing parameterc
has_unitsop some counts per secondc
has_unitsop some percent of base peakc
has_unitsop some percent of base peak times 100c
has_unitsop some number of detector countsc
has value typeop some xsd floatc
has_unitsop some u o 0000269c

inclusive low intensity thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000787

has super-classes
data processing parameterc
has_unitsop some counts per secondc
has value typeop some xsd floatc
has_unitsop some number of detector countsc
has_unitsop some percent of base peakc
has_unitsop some u o 0000269c
has_unitsop some percent of base peak times 100c

increasing m/z scanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000093

has super-classes
scan directionc

inductive detectorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000624

has super-classes
detector typec

inductively coupled plasmac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000059

has super-classes
inlet typec

infrared multiphoton dissociationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000262

has super-classes
dissociation methodc

infusionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000060

has super-classes
inlet typec

initiator methioninec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001035

has super-classes
PEFF molecule processing keywordc
has regexpop some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional commentc
has value typeop some xsd stringc

inlet attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002039

has super-classes
object attributec
part_ofop some sourcec
has sub-classes
inlet temperaturec

inlet temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002040

has super-classes
source attributec
inlet attributec
has_unitsop some u o 0000012c
has_unitsop some u o 0000027c
has value typeop some xsd floatc

inlet typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000007

has super-classes
part_ofop some sourcec
has sub-classes
continuous flow fast atom bombardmentc, direct inletc, direct insertion probec, direct liquid introductionc, electrospray inletc, flow injection analysisc, inductively coupled plasmac, infusionc, jet separatorc, membrane inletc, membrane separatorc, moving beltc, moving wirec, open splitc, particle beamc, reservoirc, septumc, thermospray inletc

instrumentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000463

has super-classes
part_ofop some spectrum generation informationc

instrument additional descriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000454

This former purgatory term was made obsolete.

instrument attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000496

has super-classes
object attributec
part_ofop some instrumentc
has sub-classes
customizationc, instrument serial numberc, transmissionc

instrument modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000031

has super-classes
part_ofop some instrumentc
has sub-classes
Agilent instrument modelc, Applied Biosystems instrument modelc, Bruker Daltonics instrument modelc, Dionex instrument modelc, Hitachi instrument modelc, LECO instrument modelc, SCIEX instrument modelc, Shimadzu instrument modelc, Thermo Fisher Scientific instrument modelc, Varian instrument modelc, Waters instrument modelc

instrument serial numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000529

has super-classes
instrument attributec
has value typeop some xsd stringc

instrument specific scan attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002527

has super-classes
scan attributec
has sub-classes
synchronous prefilter selectionc

instrument vendorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001269

has super-classes
role typec
has value typeop some xsd stringc

intensity arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000515

has super-classes
binary data arrayc
has_unitsop some counts per secondc
has_unitsop some percent of base peakc
has_unitsop some u o 0000269c
has_unitsop some percent of base peak times 100c
has_unitsop some number of detector countsc

intensity normalizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001484

has super-classes
data processing actionc
has sub-classes
area normalizationc

intensity of precursor ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001141

has super-classes
quantification datatypec
has value typeop some xsd doublec
has sub-classes
precursor apex intensityc, previous MSn-1 scan precursor intensityc

intensity unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000043

has super-classes
u o 0000000
has sub-classes
counts per secondc, number of detector countsc, percent of base peakc, percent of base peak times 100c

interaction score derived from cross-linkingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002664

has super-classes
cross-linking result detailsc
has regexpop some regular expression for interaction scores derived from cross-linkingc
has value typeop some xsd stringc
has sub-classes
protein-pair-level global FDRc, residue-pair-level global FDRc

interchannel delayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000880

has super-classes
scan attributec
has value typeop some xsd floatc
has_unitsop some u o 0000010c

intermediate analysis formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001040

has super-classes
file formatc
has sub-classes
Andromeda result formatc, Bioworks SRF formatc, DTASelect formatc, Discoverer MSF formatc, IdentityE XML formatc, MS Amanda csv formatc, Mascot DAT formatc, OMSSA csv formatc, OMSSA xml formatc, PIA XML formatc, Phenyx XML formatc, ProteinLynx XML formatc, ProteinScape Gelc, ProteinScape SearchEventc, SEQUEST SQT formatc, SEQUEST out file formatc, SEQUEST out folderc, SEQUEST summaryc, SpectrumMill directoriesc, X!Tandem xml formatc, data stored in databasec, mzIdentML formatc, pepXML formatc, protXML formatc, tab delimited text formatc

intermediate PSM listc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002440

has super-classes
spectrum identification list result detailsc

internal peptide reference usedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002515

has super-classes
quantitation software comment or customizationsc
has value typeop some xsd booleanc

internal protein reference usedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002516

has super-classes
quantitation software comment or customizationsc
has value typeop some xsd booleanc

internal reference abundancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002517

has super-classes
quantification datatypec
has value typeop some xsd doublec

InternalCalibrationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000759

has super-classes
TOPP softwarec

interpreted spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003077

has super-classes
spectrumc

interpreted spectrum attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003078

has super-classes
part_ofop some interpreted spectrumc
has sub-classes
MSn-1 isolation window precursor purityc, analyte mixture membersc, assigned intensity fractionc, average m/z deviationc, ion interpretation formatc, monoisotopic m/z deviationc, top 20 peak unassigned intensity fractionc, total unassigned intensity fractionc

inverse reduced ion mobilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002815

has super-classes
ion selection attributec
ion mobility attributec
has value typeop some xsd floatc
has_unitsop some volt-second per square centimeterc

iodoTMT quantitation analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002756

has super-classes
isobaric label quantitation analysisc

ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002806

has super-classes
molecular entityc

ion chemical typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000508

This child of the former purgatory term ion was made obsolete.

ion current chromatogramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000810

has super-classes
data file contentc
chromatogram typec
has sub-classes
basepeak chromatogramc, consecutive reaction monitoring chromatogramc, selected ion current chromatogramc, selected ion monitoring chromatogramc, selected reaction monitoring chromatogramc, total ion current chromatogramc

ion desolvationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000390

This child of the former purgatory term ion reaction was made obsolete.

ion energy loss spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000425

This former purgatory term was made obsolete.

ion injection timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000927

has super-classes
scan attributec
has_unitsop some u o 0000028c
has value typeop some xsd floatc

ion interpretation formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003103

has super-classes
interpreted spectrum attributec
has sub-classes
cross-linked peptide ion interpretation formatc, glycan ion interpretation formatc, lipid ion interpretation formatc, peptide ion interpretation formatc

ion kinetic energy spectrometryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000260

This child of the former purgatory term mass spectrometer was made obsolete.

ion mobility arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002893

has super-classes
binary data arrayc
has sub-classes
deconvoluted inverse reduced ion mobility arrayc, deconvoluted ion mobility arrayc, deconvoluted ion mobility drift time arrayc, mean inverse reduced ion mobility arrayc, mean ion mobility arrayc, mean ion mobility drift time arrayc, raw inverse reduced ion mobility arrayc, raw ion mobility arrayc, raw ion mobility drift time arrayc

ion mobility attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002892

has super-classes
scan attributec
PSM-level attributec
has sub-classes
FAIMS compensation voltagec, inverse reduced ion mobilityc, ion mobility drift timec

ion mobility deconvolutionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003222

has super-classes
data processing actionc

ion mobility drift timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002476

has super-classes
ion selection attributec
ion mobility attributec
has value typeop some xsd floatc
has_unitsop some u o 0000028c

ion mobility separationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003219

has super-classes
mass spectrometry acquisition method aspectc
has sub-classes
data independent acquisition from dissociation of full mass rangec, data independent acquisition from dissociation of full mass range after ion mobility separationc, data independent acquisition from dissociation of sequential mass ranges after ion mobility separationc

ion mobility spectrometryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000261

This child of the former purgatory term mass spectrometer was made obsolete.

ion opticsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000462

has super-classes
part_ofop some instrumentc
has sub-classes
ion optics attributec, ion optics typec

ion optics attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000487

has super-classes
ion opticsc
has sub-classes
accelerating voltagec, electric field strengthc, field-free regionc, space charge effectc

ion optics typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000597

has super-classes
ion opticsc
has sub-classes
collision quadrupolec, delayed extractionc, einzel lensc, first stability regionc, fringing fieldc, kinetic energy analyzerc, magnetic deflectionc, reflectronc, selected ion flow tubec, static fieldc, time lag focusingc

ion propertyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000507

has super-classes
part_ofop some ionc
has sub-classes
charge statec

ion reactionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000437

This child of the former purgatory term ion was made obsolete.

ion rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000506

This child of the former purgatory term ion was made obsolete.

ion selection attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000455

has super-classes
object attributec
part_ofop some spectrumc
has sub-classes
SRM transition attributec, charge statec, experimental precursor monoisotopic m/zc, inverse reduced ion mobilityc, ion mobility drift timec, peak intensityc, peak intensity rankc, peak targeting suitability rankc, possible charge statec, selected ion m/zc, selected precursor m/zc

ion series considered in searchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002473

has super-classes
search input detailsc
has sub-classes
H2O neutral lossc, H3PO4 neutral lossc, NH3 neutral lossc, param: a ionc, param: b ionc, param: c ionc, param: d ionc, param: immonium ionc, param: internal ya ionc, param: internal yb ionc, param: v ionc, param: w ionc, param: x ionc, param: y ionc, param: z ionc, param: z+1 ionc, param: z+2 ionc

ion stability typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002343

This child of the former purgatory term ion was made obsolete.

ion trapc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000264

has super-classes
mass analyzer typec
has sub-classes
linear ion trapc, quadrupole ion trapc

ion-pair formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000391

This child of the former purgatory term ion reaction was made obsolete.

ion-to-photon detectorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000349

has super-classes
detector typec

ion/molecule reactionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000427

This child of the former purgatory term ion reaction was made obsolete.

ion/neutral complexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000428

This child of the former purgatory term ion reaction was made obsolete.

ion/neutral species exchange reactionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000430

This child of the former purgatory term ion reaction was made obsolete.

ion/neutral species reactionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000429

This child of the former purgatory term ion reaction was made obsolete.

ion?c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000365

This former purgatory term was made obsolete.

ionization cross sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000217

This child of the former purgatory term ion reaction was made obsolete.

ionization efficiencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000218

This term was made obsolete because it was replaced by ionization efficiency (MS:1000392).
has super-classes
has value typeop some xsd floatc

ionization efficiencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000392

has super-classes
source attributec
has value typeop some xsd floatc

ionization energyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000219

This child of the former purgatory term ion attribute was made obsolete.
has super-classes
has value typeop some xsd floatc
has_unitsop some u o 0000266c

ionization modec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000009

This term was made obsolete because it was replaced by scan polarity (MS:1000465).

ionization typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000008

has super-classes
part_ofop some sourcec
has sub-classes
Negative Ion chemical ionizationc, adiabatic ionizationc, associative ionizationc, atmospheric pressure ionizationc, autodetachmentc, autoionizationc, charge exchange ionizationc, chemi-ionizationc, chemical ionizationc, desorption ionizationc, dissociative ionizationc, electron ionizationc, electrospray ionizationc, fast atom bombardment ionizationc, fast ion bombardmentc, field ionizationc, flowing afterglowc, glow discharge ionizationc, liquid secondary ionizationc, multiphoton ionizationc, neutralization reionization mass spectrometryc, penning ionizationc, photoionizationc, plasma desorption ionizationc, pyrolysis mass spectrometryc, resonance enhanced multiphoton ionizationc, secondary ionizationc, soft ionizationc, spark ionizationc, surface ionizationc, thermal ionizationc, vertical ionizationc

ionizing collisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000426

This child of the former purgatory term ion reaction was made obsolete.

ions series consideredc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001122

has super-classes
peptide sequence-level identification attributec

ions series considered in searchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001066

has super-classes
search input detailsc
has sub-classes
param: a ion-H2O DEPRECATEDc, param: a ion-NH3 DEPRECATEDc, param: b ion-H2O DEPRECATEDc, param: b ion-H3PO4 DEPRECATEDc, param: b ion-NH3 DEPRECATEDc, param: y ion-H2O DEPRECATEDc, param: y ion-H3PO4 DEPRECATEDc, param: y ion-NH3 DEPRECATEDc

IonSpec instrument modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000123

has super-classes
Varian instrument modelc
has sub-classes
HiRes ESIc, HiRes MALDIc, OMEGAc, OMEGA-2001c, explorerc, ultimac

iProphetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002288

has super-classes
Trans-Proteomic Pipeline softwarec

iProX dataset identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002836

has super-classes
external reference identifierc
has value typeop some xsd stringc

iProX dataset URIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002837

has super-classes
external reference identifierc
has value typeop some xsd any u r ic

IPTL quantitation analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002212

has super-classes
isobaric label quantitation analysisc

iRT retention time normalization standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002005

has super-classes
retention time normalization standardc

ISB mzXML formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000566

has super-classes
mass spectrometer file formatc

isobaric label quantitation analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002009

has super-classes
quantitation analysis summaryc
has sub-classes
DiART quantitation analysisc, DiLeu quantitation analysisc, IPTL quantitation analysisc, TMT quantitation analysisc, aminoxyTMT quantitation analysisc, glyco-TMT quantitation analysisc, hydrazideTMT quantitation analysisc, iTRAQ quantitation analysisc, iTRAQH quantitation analysisc, iodoTMT quantitation analysisc

IsobariQc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002210

has super-classes
quantitation software namec
analysis softwarec

isoelectric pointc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000862

has super-classes
molecular entity propertyc
has value typeop some xsd floatc
has sub-classes
predicted isoelectric pointc

isoform-level identification attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003131

has super-classes
single identification result attributec
has sub-classes
isoform-level identification statisticc

isoform-level identification statisticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003132

has super-classes
isoform-level identification attributec
has sub-classes
isoform-level Q-valuec

isoform-level Q-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003133

has super-classes
isoform-level identification statisticc
has_domainop some value between 0 and 1 inclusivec
has value typeop some xsd doublec
has sub-classes
ProSight:isoform Q-valuec

isolation widthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000023

This former purgatory term was made obsolete.
has super-classes
has value typeop some xsd floatc
has_unitsop some m/zc

isolation window attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000792

has super-classes
object attributec
part_ofop some scanc
has sub-classes
isolation window full rangec, isolation window lower limitc, isolation window lower offsetc, isolation window target m/zc, isolation window upper limitc, isolation window upper offsetc

isolation window full rangec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003159

has super-classes
isolation window attributec

isolation window lower limitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000794

This term was obsoleted in favour of using a target, lower, upper offset scheme. See terms 1000827-1000829.
has super-classes
isolation window attributec
has value typeop some xsd floatc
has_unitsop some m/zc

isolation window lower offsetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000828

has super-classes
isolation window attributec
has value typeop some xsd floatc
has_unitsop some m/zc

isolation window target m/zc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000827

has super-classes
isolation window attributec
has_unitsop some m/zc
has value typeop some xsd floatc

isolation window upper limitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000793

This term was obsoleted in favour of using a target, lower, upper offset scheme. See terms 1000827-1000829.
has super-classes
isolation window attributec
has value typeop some xsd floatc
has_unitsop some m/zc

isolation window upper offsetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000829

has super-classes
isolation window attributec
has_unitsop some m/zc
has value typeop some xsd floatc

isomerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002959

has super-classes
moleculec
has value typeop some xsd stringc
has sub-classes
isotopologuec, isotopomerc

IsoPrimec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000164

has super-classes
Waters instrument modelc

IsoProbec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000165

has super-classes
Waters instrument modelc

IsoProbe Tc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000166

has super-classes
Waters instrument modelc

isotope dilution mass spectrometryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000220

This child of the former purgatory term mass spectrometry was made obsolete.

isotope ratio mass spectrometryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000263

This child of the former purgatory term mass spectrometry was made obsolete.

isotopic fit scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002891

has super-classes
small molecule confidence measurec
has value typeop some xsd floatc

isotopic ion MS peakc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002956

has super-classes
peakc
has value typeop some xsd stringc
has sub-classes
isotopologue MS peakc, isotopomer MS peakc

isotopic pattern areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001846

has super-classes
quantification datatypec
has value typeop some xsd doublec

isotopologuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002961

has super-classes
isomerc
has value typeop some xsd stringc

Isotopologue ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000366

This child of the former purgatory term ion chemical type was made obsolete.

isotopologue MS peakc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002958

has super-classes
isotopic ion MS peakc
has value typeop some xsd stringc

isotopomerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002960

has super-classes
isomerc
has value typeop some xsd stringc

isotopomer MS peakc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002957

has super-classes
isotopic ion MS peakc
has value typeop some xsd stringc

isotopomer peakc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002897

This term was obsoleted because it was replaced by the more exact terms MS:1002956 'isotopic ion MS peak', MS:1002957 'isotopomer MS peak' and MS:1002958 'isotopologue MS peak' instead.
has super-classes
peakc
has value typeop some xsd stringc

Isotopomeric ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000367

This child of the former purgatory term ion chemical type was made obsolete.

ISQc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001908

has super-classes
Thermo Scientific instrument modelc

ITQ 1100c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000637

has super-classes
Thermo Scientific instrument modelc

ITQ 700c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000635

has super-classes
Thermo Scientific instrument modelc

ITQ 900c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000636

has super-classes
Thermo Scientific instrument modelc

iTRAQ quantitation analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001837

has super-classes
isobaric label quantitation analysisc

iTRAQ reagentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002622

has super-classes
sample labelc
has sub-classes
iTRAQ reagent 113c, iTRAQ reagent 114c, iTRAQ reagent 115c, iTRAQ reagent 116c, iTRAQ reagent 117c, iTRAQ reagent 118c, iTRAQ reagent 119c, iTRAQ reagent 121c

iTRAQ reagent 113c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002623

has super-classes
iTRAQ reagentc

iTRAQ reagent 114c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002624

has super-classes
iTRAQ reagentc

iTRAQ reagent 115c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002625

has super-classes
iTRAQ reagentc

iTRAQ reagent 116c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002626

has super-classes
iTRAQ reagentc

iTRAQ reagent 117c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002627

has super-classes
iTRAQ reagentc

iTRAQ reagent 118c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002628

has super-classes
iTRAQ reagentc

iTRAQ reagent 119c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002629

has super-classes
iTRAQ reagentc

iTRAQ reagent 121c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002630

has super-classes
iTRAQ reagentc

ITRAQAnalyzerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002129

has super-classes
TOPP softwarec
quantitation software namec

iTRAQH quantitation analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002760

has super-classes
isobaric label quantitation analysisc

jet separatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000061

has super-classes
inlet typec

journal article keywordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001924

has super-classes
external reference keywordc
has value typeop some xsd stringc

jPOST dataset identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002632

has super-classes
external reference identifierc
has value typeop some xsd stringc

jPOST dataset URIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002633

has super-classes
external reference identifierc
has value typeop some xsd any u r ic

kinetic energy analyzerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000311

has super-classes
ion optics typec

kinetic energy release distributionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000265

This child of the former purgatory term ion reaction was made obsolete.

kinetic methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000431

This child of the former purgatory term ion reaction was made obsolete.

KSDP scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003012

has super-classes
PSM-level search engine specific statisticc
has_orderop some higher score betterc

KWc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001017

has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc

lab headc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002332

has super-classes
contact rolec

lab personnelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001270

has super-classes
role typec
has value typeop some xsd stringc

label free samplec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002038

has super-classes
sample attributec

label-free peptide level quantitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002020

has super-classes
LC-MS label-free quantitation analysisc
has value typeop some xsd booleanc

label-free protein level quantitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002021

has super-classes
LC-MS label-free quantitation analysisc
has value typeop some xsd booleanc

label-free proteingroup level quantitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002022

has super-classes
LC-MS label-free quantitation analysisc
has value typeop some xsd booleanc

label-free raw feature quantitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002019

has super-classes
LC-MS label-free quantitation analysisc
has value typeop some xsd booleanc

laserc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000840

has super-classes
part_ofop some source attributec

laser attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000841

has super-classes
part_ofop some laserc
has sub-classes
attenuationc, focus diameter xc, focus diameter yc, impact anglec, pulse durationc, pulse energyc, wavelengthc

Laser Desorptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000266

This term was made obsolete because it was replaced by laser desorption ionization (MS:1000393).

laser desorption ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000393

has super-classes
desorption ionizationc

laser typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000842

has super-classes
part_ofop some laserc
has sub-classes
dye-laserc, free electron laserc, gas laserc, solid-state laserc

LC-MS feature intensityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001840

has super-classes
feature-level quantification datatypec
has value typeop some xsd doublec

LC-MS feature volumec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001841

has super-classes
feature-level quantification datatypec
has value typeop some xsd doublec

LC-MS label-free quantitation analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001834

has super-classes
quantitation analysis summaryc
has sub-classes
label-free peptide level quantitationc, label-free protein level quantitationc, label-free proteingroup level quantitationc, label-free raw feature quantitationc

LCMS-2010Ac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000606

has super-classes
Shimadzu Scientific Instruments instrument modelc

LCMS-2010EVc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000605

has super-classes
Shimadzu Scientific Instruments instrument modelc

LCMS-2020c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003003

has super-classes
Shimadzu Scientific Instruments instrument modelc

LCMS-8040c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003002

has super-classes
Shimadzu Scientific Instruments instrument modelc

LCMS-8045c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003001

has super-classes
Shimadzu Scientific Instruments instrument modelc

LCMS-8050c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003000

has super-classes
Shimadzu Scientific Instruments instrument modelc

LCMS-8060c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002999

has super-classes
Shimadzu Scientific Instruments instrument modelc

LCMS-9030c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002998

has super-classes
Shimadzu Scientific Instruments instrument modelc

LCMS-IT-TOFc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000604

has super-classes
Shimadzu Scientific Instruments instrument modelc

LCQ Advantagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000167

has super-classes
Thermo Finnigan instrument modelc

LCQ Classicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000168

has super-classes
Thermo Finnigan instrument modelc

LCQ Decac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000554

has super-classes
Thermo Finnigan instrument modelc

LCQ Deca XP Plusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000169

has super-classes
Thermo Finnigan instrument modelc

LCQ Fleetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000578

has super-classes
Thermo Finnigan instrument modelc

leading proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002401

has super-classes
protein group or subset relationshipc

LECO instrument modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001800

has super-classes
instrument modelc
has sub-classes
Citius HRTc, Pegasusc, Pegasus 4Dc, Pegasus BTc, Pegasus HRTc, Pegasus IIIc, TruTOFc

LECO softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001798

has super-classes
softwarec
has sub-classes
ChromaTOF HRT softwarec, ChromaTOF softwarec

Lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001006

has super-classes
PEFF file sequence entry termc
has value typeop some xsd intc

leukocyte elastasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001915

has super-classes
cleavage agent namec
has regexpop some (?<=[ALIV])(?c

Librac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002291

has super-classes
Trans-Proteomic Pipeline softwarec

library creation logc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003206

has super-classes
library provenance attributec
has value typeop some xsd stringc

library creation softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003207

has super-classes
softwarec
spectral library attributec
has sub-classes
PeakForestc

library descriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003189

has super-classes
spectral library attributec
has value typeop some xsd stringc

library entryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003172

has super-classes
part_ofop some library entry commentc

library entry classc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003211

has super-classes
spectral library attributec

library entry class namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003212

has super-classes
has value typeop some xsd stringc
part_ofop some library entry classc

library entry commentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003168

has super-classes
assigned intensity fractionc
has value typeop some xsd stringc

library format versionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003186

has super-classes
spectral library attributec
has value typeop some xsd stringc

library identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003187

has super-classes
spectral library attributec
has value typeop some xsd stringc

library namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003188

has super-classes
spectral library attributec
has value typeop some xsd stringc

library provenance attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003201

has super-classes
spectral library attributec
has sub-classes
command-line parametersc, constituent identification filec, constituent library filec, constituent spectrum filec, library creation logc

library URIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003191

has super-classes
spectral library attributec
has value typeop some xsd stringc

library versionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003190

has super-classes
spectral library attributec
has value typeop some xsd stringc

license URIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003197

has super-classes
spectral library attributec
has value typeop some xsd stringc

LIFTc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002000

has super-classes
dissociation methodc

LightSight Softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000662

has super-classes
SCIEX softwarec
analysis softwarec
data processing softwarec

LIMSAc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002978

has super-classes
data processing softwarec
lipidomics analysis softwarec

linearc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000095

This term was made obsolete because it was redundant with the Pato Ontology term linear (UO:0001199).
has super-classes
scan lawc

linear ion trapc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000291

has super-classes
ion trapc
has sub-classes
axial ejection linear ion trapc, radial ejection linear ion trapc

linked scanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000329

This former purgatory term was made obsolete.

linked scan at constant b/ec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000330

This child of the former purgatory term linked scan was made obsolete.

Linked Scan at Constant B2/Ec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000332

This child of the former purgatory term linked scan was made obsolete.

Linked Scan at Constant B[1-(E/E0)]^1/2 / Ec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000333

This child of the former purgatory term linked scan was made obsolete.

Linked Scan at Constant E2/Vc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000331

This child of the former purgatory term linked scan was made obsolete.

Lipid Data Analyzerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002965

has super-classes
data processing softwarec
lipidomics analysis softwarec

lipid ion interpretation formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003107

has super-classes
ion interpretation formatc

Lipid-Proc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002972

has super-classes
data processing softwarec
lipidomics analysis softwarec

LipidBlastc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002971

has super-classes
data processing softwarec
lipidomics analysis softwarec

LipiDexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002974

has super-classes
data processing softwarec
lipidomics analysis softwarec

LipidFinderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002973

has super-classes
data processing softwarec
lipidomics analysis softwarec

LipidHunterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002967

has super-classes
data processing softwarec
lipidomics analysis softwarec

LipidMatchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002969

has super-classes
data processing softwarec
lipidomics analysis softwarec

lipidomics analysis softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002964

has super-classes
small molecule analysis softwarec
has sub-classes
ALEXc, ALEX123c, Greazyc, LIMSAc, LIQUIDc, LOBSTAHSc, LPPtigerc, LipiDexc, Lipid Data Analyzerc, Lipid-Proc, LipidBlastc, LipidFinderc, LipidHunterc, LipidMatchc, LipidQAc, LipidXplorerc

LipidQAc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002980

has super-classes
data processing softwarec
lipidomics analysis softwarec

LipidXplorerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002968

has super-classes
data processing softwarec
lipidomics analysis softwarec

LIQUIDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002975

has super-classes
data processing softwarec
lipidomics analysis softwarec

liquid chromatography separationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002271

has super-classes
chromatography separationc

liquid sample statec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000049

has super-classes
sample statec

liquid secondary ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000395

has super-classes
ionization typec

list of floatsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002713

has super-classes
list of typec
has value typeop some xsd floatc

list of integersc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002712

has super-classes
list of typec
has value typeop some xsd integerc

list of stringsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002711

has super-classes
list of typec
has value typeop some xsd stringc

list of typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002710

has super-classes
compound data typec
has sub-classes
list of floatsc, list of integersc, list of stringsc

LOBSTAHSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002979

has super-classes
data processing softwarec
lipidomics analysis softwarec

local FDRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001250

has super-classes
peptide sequence-level identification statisticc
single protein identification statisticc
has value typeop some xsd doublec

local FLR at thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002692

has super-classes
PTM localization result list statisticc

local retention timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000895

has super-classes
retention timec
has value typeop some xsd floatc
has_unitsop some u o 0000031c
has_unitsop some u o 0000010c

low energy collisionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000432

This child of the former purgatory term ion reaction was made obsolete.

low intensity data point removalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000594

has super-classes
data filteringc

low intensity thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000629

has super-classes
data processing parameterc
has_unitsop some u o 0000269c
has_unitsop some counts per secondc
has_unitsop some percent of base peak times 100c
has_unitsop some number of detector countsc
has value typeop some xsd floatc
has_unitsop some percent of base peakc

low-energy collision-induced dissociationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000433

has super-classes
dissociation methodc

lower score betterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002109

has super-classes
part_ofop some search engine specific scorec

LOWESS smoothingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000783

has super-classes
smoothingc

lowest observed m/zc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000528

has super-classes
chromatogram attributec
spectrum propertyc
has value typeop some xsd floatc
has_unitsop some m/zc

lowest observed wavelengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000619

has super-classes
chromatogram attributec
spectrum propertyc
has value typeop some xsd floatc
has_unitsop some u o 0000018c

LPPtigerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003010

has super-classes
data processing softwarec
lipidomics analysis softwarec

LTQc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000447

has super-classes
Thermo Scientific instrument modelc

LTQ FTc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000448

has super-classes
Thermo Scientific instrument modelc

LTQ FT Ultrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000557

has super-classes
Thermo Scientific instrument modelc

LTQ Orbitrapc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000449

has super-classes
Thermo Scientific instrument modelc

LTQ Orbitrap Classicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002835

has super-classes
Thermo Scientific instrument modelc

LTQ Orbitrap Discoveryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000555

has super-classes
Thermo Scientific instrument modelc

LTQ Orbitrap Elitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001910

has super-classes
Thermo Scientific instrument modelc

LTQ Orbitrap Velosc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001742

has super-classes
Thermo Scientific instrument modelc

LTQ Orbitrap Velos Proc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003096

has super-classes
Thermo Scientific instrument modelc

LTQ Orbitrap XLc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000556

has super-classes
Thermo Scientific instrument modelc

LTQ Orbitrap XL ETDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000639

has super-classes
Thermo Scientific instrument modelc

LTQ Velosc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000855

has super-classes
Thermo Scientific instrument modelc

LTQ Velos ETDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000856

has super-classes
Thermo Scientific instrument modelc

LTQ XLc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000854

has super-classes
Thermo Scientific instrument modelc

LTQ XL ETDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000638

has super-classes
Thermo Scientific instrument modelc

LXQc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000450

has super-classes
Thermo Scientific instrument modelc

Lys-Cc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001309

has super-classes
cleavage agent namec
has regexpop some (?<=K)(?!P)c

Lys-C/Pc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001310

has super-classes
cleavage agent namec
has regexpop some (?<=K)c

Lys-Nc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003093

has super-classes
cleavage agent namec
has regexpop some (?<=K)(?!P)c

LysargiNasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002708

has super-classes
cleavage agent namec
has regexpop some (?=[KR])c

M+H ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002820

has super-classes
positive mode adduct ionc

M-H ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002821

has super-classes
negative mode adduct ionc

m/zc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000040

has super-classes
u o 0000000

m/z arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000514

has super-classes
binary data arrayc
has_unitsop some m/zc

m/z calibrationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001485

has super-classes
data processing actionc

m/z Separation Methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000444

This former purgatory term was made obsolete.

M@LDI Lc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000170

has super-classes
Waters instrument modelc

M@LDI LRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000171

has super-classes
Waters instrument modelc

magnetic deflectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000221

has super-classes
ion optics typec

magnetic field strengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000025

has super-classes
mass analyzer attributec
has_unitsop some u o 0000228c
has value typeop some xsd floatc

magnetic sectorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000080

has super-classes
mass analyzer typec

MALDI LTQ Orbitrapc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000643

has super-classes
Thermo Scientific instrument modelc

MALDI LTQ XLc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000642

has super-classes
Thermo Scientific instrument modelc

MALDI matrix applicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000832

has super-classes
part_ofop some sample preparationc
has sub-classes
matrix solutionc, matrix solution concentrationc

MALDI Solutionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001558

has super-classes
acquisition softwarec
analysis softwarec
data processing softwarec
Shimadzu Corporation softwarec
has sub-classes
MALDI Solutions Microbial Identificationc

MALDI Solutions LC-MALDIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002381

has super-classes
acquisition softwarec
analysis softwarec
data processing softwarec
Shimadzu Corporation softwarec

MALDI Solutions Microbial Identificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001878

has super-classes
MALDI Solutionsc

maldi spot identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000552

This former purgatory term was made obsolete.

MALDI Synapt G2 HDMSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001771

has super-classes
Waters instrument modelc

MALDI Synapt G2 MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001772

has super-classes
Waters instrument modelc

MALDI Synapt G2-S HDMSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001773

has super-classes
Waters instrument modelc

MALDI Synapt G2-S MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001774

has super-classes
Waters instrument modelc

MALDI SYNAPT G2-Sic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002727

has super-classes
Waters instrument modelc

MALDI Synapt HDMSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001775

has super-classes
Waters instrument modelc

MALDI Synapt MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001776

has super-classes
Waters instrument modelc

Maltcmsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002344

has super-classes
analysis softwarec
data processing softwarec

manual validationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001125

has super-classes
peptide sequence-level identification statisticc
single protein identification statisticc
has value typeop some xsd stringc

MapAlignerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000760

This term was made obsolete, because it is replaced by the terms under the 'TOPP map aligner' (MS:1002147) branch.
has super-classes
TOPP softwarec

MapNormalizerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000761

has super-classes
TOPP softwarec

marginally distinguished proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002409

has super-classes
protein group or subset relationshipc

MaRiMbac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000872

has super-classes
SRM softwarec

MaRiMbac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000924

This term was made obsolete because it was redundant with an existing term (MS:1000872).

MarkerView Softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000665

has super-classes
SCIEX softwarec
analysis softwarec
data processing softwarec

Mascotc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001207

has super-classes
analysis softwarec

Mascot DAT formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001199

has super-classes
intermediate analysis formatc

Mascot Distillerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001488

has super-classes
quantitation software namec
analysis softwarec

Mascot input parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002095

has super-classes
search engine specific input parameterc
has sub-classes
Mascot:C13 countsc, Mascot:IncludeErrorTolerantMatchesc, Mascot:Instrumentc, Mascot:IntegratedSpectralLibrarySearchc, Mascot:MaxProteinHitsc, Mascot:MinMSMSThresholdc, Mascot:MinNumSigUniqueSeqsc, Mascot:PreferredTaxonomyc, Mascot:ProteinGroupingc, Mascot:ProteinScoringMethodc, Mascot:RequireBoldRedc, Mascot:ShowDecoyMatchesc, Mascot:ShowHomologousProteinsWithSamePeptidesc, Mascot:ShowHomologousProteinsWithSubsetOfPeptidesc, Mascot:SigThresholdc, Mascot:SigThresholdTypec, Mascot:UseUnigeneClusteringc, Mascot:use MudPIT scoringc

Mascot Integrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001489

has super-classes
analysis softwarec

Mascot MGF formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001062

has super-classes
mass spectrometer file formatc

Mascot Parserc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001478

has super-classes
analysis softwarec

Mascot query numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001528

The spectrum (query) number in a Mascot results file, starting from 1.
has super-classes
native spectrum identifier formatc
spectrum identification result detailsc

Mascot:C13 countsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001962

has super-classes
Mascot input parameterc
has value typeop some xsd non negative integerc

Mascot:expectation valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001172

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

Mascot:homology thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001370

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

Mascot:identity thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001371

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

Mascot:IncludeErrorTolerantMatchesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001324

has super-classes
Mascot input parameterc
has value typeop some xsd booleanc

Mascot:Instrumentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001656

has super-classes
Mascot input parameterc
has value typeop some xsd stringc

Mascot:IntegratedSpectralLibrarySearchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002749

has super-classes
Mascot input parameterc
has value typeop some xsd booleanc

Mascot:matched ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001173

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd non negative integerc

Mascot:MaxProteinHitsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001317

has super-classes
Mascot input parameterc
has value typeop some xsd stringc

Mascot:MinMSMSThresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001319

has super-classes
Mascot input parameterc
has value typeop some xsd doublec

Mascot:MinNumSigUniqueSeqsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003030

has super-classes
Mascot input parameterc
has value typeop some xsd non negative integerc

Mascot:PreferredTaxonomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001793

has super-classes
Mascot input parameterc
has value typeop some xsd stringc

Mascot:ProteinGroupingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001759

has super-classes
Mascot input parameterc
has value typeop some xsd stringc

Mascot:ProteinScoringMethodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001318

has super-classes
Mascot input parameterc
has value typeop some xsd stringc

Mascot:PTM site assignment confidencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002012

has super-classes
PTM localization PSM-level statisticc
has_unitsop some u o 0000187c
has value typeop some xsd stringc

Mascot:PTM site assignment confidence thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002561

has super-classes
PTM localization score thresholdc
has value typeop some xsd doublec

Mascot:RequireBoldRedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001322

has super-classes
Mascot input parameterc
has value typeop some xsd booleanc

Mascot:scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001171

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

Mascot:ShowDecoyMatchesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001325

has super-classes
Mascot input parameterc
has value typeop some xsd booleanc

Mascot:ShowHomologousProteinsWithSamePeptidesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001320

has super-classes
Mascot input parameterc
has value typeop some xsd booleanc

Mascot:ShowHomologousProteinsWithSubsetOfPeptidesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001321

has super-classes
Mascot input parameterc
has value typeop some xsd booleanc

Mascot:SigThresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001316

has super-classes
Mascot input parameterc
has value typeop some xsd doublec

Mascot:SigThresholdTypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001758

has super-classes
Mascot input parameterc
has value typeop some xsd stringc

Mascot:total ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001174

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd non negative integerc

Mascot:use MudPIT scoringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001667

This term was made obsolete because it's recommended to use Mascot:ProteinScoringMethod (MS:1001318) instead.
has super-classes
Mascot input parameterc
has value typeop some xsd booleanc

Mascot:UseUnigeneClusteringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001323

has super-classes
Mascot input parameterc
has value typeop some xsd booleanc

mass analyzed ion kinetic energy spectrometryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000267

This child of the former purgatory term mass spectrometer was made obsolete.

mass analyzerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000451

has super-classes
part_ofop some instrumentc

mass analyzer attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000480

has super-classes
part_ofop some mass analyzerc
has sub-classes
TOF Total Path Lengthc, accuracyc, final MS exponentc, magnetic field strengthc, reflectron statec

mass analyzer typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000443

has super-classes
part_ofop some mass analyzerc
has sub-classes
cyclotronc, electrostatic energy analyzerc, fourier transform ion cyclotron resonance mass spectrometerc, ion trapc, magnetic sectorc, orbitrapc, quadrupolec, stored waveform inverse fourier transformc, time-of-flightc

mass arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003143

has super-classes
binary data arrayc
has_unitsop some u o 0000221c

mass defectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000222

This child of the former purgatory term ion attribute was made obsolete.
has super-classes
has_unitsop some u o 0000002c
has value typeop some xsd floatc

mass limitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000312

This former purgatory term was made obsolete.

mass numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000223

This child of the former purgatory term ion attribute was made obsolete.
has super-classes
has value typeop some xsd intc

mass resolutionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000011

has super-classes
scan attributec
has value typeop some xsd stringc

mass resolving powerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000234

This term was made obsolete because it was replaced by mass resolving power (MS:1000800).
has super-classes
has value typeop some xsd floatc

mass resolving powerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000800

has super-classes
scan attributec
has value typeop some xsd stringc

mass scanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000090

This child of the former purgatory term Scan Function was made obsolete.

mass selective axial ejectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000314

This child of the former purgatory term m/z Separation Method was made obsolete.

mass selective instabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000315

This child of the former purgatory term m/z Separation Method was made obsolete.

mass spectrograph obsoletec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000292

This former purgatory term was made obsolete.

mass spectrometerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000293

This former purgatory term was made obsolete.

mass spectrometer file formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000560

has super-classes
file formatc
has sub-classes
ABI WIFF formatc, Agilent MassHunter formatc, Andi-MS formatc, Andromeda:apl file formatc, Bioworks SRF formatc, Bruker BAF formatc, Bruker Container formatc, Bruker FID formatc, Bruker TDF formatc, Bruker U2 formatc, Bruker XML formatc, Bruker/Agilent YEP formatc, DTA formatc, ISB mzXML formatc, MS1 formatc, MS2 formatc, Mascot MGF formatc, Micromass PKL formatc, PSI mzData formatc, PerSeptive PKS formatc, Phenyx XML formatc, ProteinLynx Global Server mass spectrum XML formatc, Proteinscape spectrac, SCIEX API III formatc, SCIEX TOF/TOF T2D formatc, SCIEX TOF/TOF databasec, SCiLS Lab formatc, Shimadzu Biotech LCD formatc, Shimadzu Biotech database entityc, Thermo RAW formatc, UIMF formatc, Waters raw formatc, chrom formatc, feature formatc, msalign formatc, mz5 formatc, mzML formatc, mzMLb formatc, parameter filec, text formatc

mass spectrometryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000268

This former purgatory term was made obsolete.

mass spectrometry acquisition methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003213

has super-classes
data file contentc
acquisition parameterc
has sub-classes
data independent acquisition from dissociation of full mass rangec, data independent acquisition from dissociation of full mass range after ion mobility separationc, data independent acquisition from dissociation of scanning quadrupole across mass rangec, data independent acquisition from dissociation of sequential mass rangesc, data independent acquisition from dissociation of sequential mass ranges after ion mobility separationc, selected ion monitoringc, selected reaction monitoringc

mass spectrometry acquisition method aspectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003214

has super-classes
spectrum generation informationc
has sub-classes
data-dependent acquisitionc, data-independent acquisitionc, dissociation of full mass rangec, dissociation of scanning quadrupole across a specified mass rangec, dissociation of sequential mass rangesc, ion mobility separationc

mass spectrometry imagingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002521

has super-classes
run attributec

mass spectrometry/mass spectrometryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000269

This child of the former purgatory term mass spectrometer was made obsolete.

mass spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000294

has super-classes
data file contentc
spectrum typec
has sub-classes
CRM spectrumc, MS1 spectrumc, MSn spectrumc, SIM spectrumc, SRM spectrumc, charge inversion mass spectrumc, constant neutral gain spectrumc, constant neutral loss spectrumc, e/2 mass spectrumc, precursor ion spectrumc, product ion spectrumc

mass table optionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001354

has super-classes
part_ofop some spectrum interpretationc
has sub-classes
mass table sourcec

mass table sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001345

has super-classes
mass table optionsc
has sub-classes
AAIndex mass tablec

mass trace reporting: polygonsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001827

has super-classes
feature list attributec

mass trace reporting: rectanglesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001826

has super-classes
feature list attributec

mass type settingsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001210

has super-classes
search input detailsc
has sub-classes
fragment mass type averagec, fragment mass type monoc, parent mass type averagec, parent mass type monoc

mass unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000464

This term was made obsolete because it was redundant with Unit Ontology mass unit (UO:0000002).

MassHunter BioConfirmc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000683

has super-classes
Agilent softwarec
analysis softwarec
data processing softwarec

MassHunter Data Acquisitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000678

has super-classes
Agilent softwarec
acquisition softwarec

MassHunter Easy Accessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000679

has super-classes
Agilent softwarec
acquisition softwarec

MassHunter Mass Profilerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000685

has super-classes
Agilent softwarec
analysis softwarec
data processing softwarec

MassHunter Metabolite IDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000682

has super-classes
Agilent softwarec
analysis softwarec
data processing softwarec

MassHunter Qualitative Analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000680

has super-classes
Agilent softwarec
analysis softwarec
data processing softwarec

MassHunter Quantitative Analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000681

has super-classes
Agilent softwarec
analysis softwarec
data processing softwarec

MassIVE dataset identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002487

has super-classes
external reference identifierc
has value typeop some xsd stringc

MassIVE dataset URIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002488

has super-classes
external reference identifierc
has value typeop some xsd any u r ic

MassLynxc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000534

has super-classes
Waters softwarec
acquisition softwarec
analysis softwarec
data processing softwarec

massWolfc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000538

has super-classes
data processing softwarec

MAT253c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000172

has super-classes
Finnigan MAT instrument modelc

MAT900XPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000173

has super-classes
Finnigan MAT instrument modelc

MAT900XP Trapc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000174

has super-classes
Finnigan MAT instrument modelc

MAT95XPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000175

has super-classes
Finnigan MAT instrument modelc

MAT95XP Trapc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000176

has super-classes
Finnigan MAT instrument modelc

mathieu stability diagramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000316

This child of the former purgatory term m/z Separation Method was made obsolete.

matrix application typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000833

has super-classes
part_ofop some MALDI matrix applicationc
has sub-classes
crushed crystal MALDI sample preparationc, dried droplet MALDI matrix preparationc, fast evaporation MALDI sample preparationc, overlayer MALDI sample preparationc, precoated MALDI sample platec, printed MALDI matrix preparationc, quick and dirty MALDI sample preparationc, sandwich MALDI sample preparationc, spin coating MALDI sample preparationc, sprayed MALDI matrix preparationc, vacuum drying MALDI sample preparationc

matrix solutionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000834

has super-classes
MALDI matrix applicationc
has value typeop some xsd stringc

matrix solution concentrationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000835

has super-classes
MALDI matrix applicationc
has value typeop some xsd floatc
has_unitsop some u o 0000175c

matrix-assisted laser desorption ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000075

has super-classes
desorption ionizationc

mattauch-herzog geometryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000295

This former purgatory term was made obsolete.

mature proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001020

has super-classes
PEFF molecule processing keywordc
has regexpop some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional commentc
has value typeop some xsd stringc

Mauic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002452

has super-classes
analysis softwarec
data processing softwarec

max fold changec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001853

has super-classes
quantification datatypec
has value typeop some xsd doublec

maXisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001541

has super-classes
Bruker Daltonics maXis seriesc

maXis 4Gc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002279

has super-classes
Bruker Daltonics maXis seriesc

maXis IIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003004

has super-classes
Bruker Daltonics maXis seriesc

MaxQuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001583

has super-classes
quantitation software namec
analysis softwarec

MaxQuant protein group-level scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003097

has super-classes
search engine specific score for protein groupsc
has value typeop some xsd doublec

MaxQuant-DIA PEPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003101

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

MaxQuant-DIA peptide PEPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003099

has super-classes
search engine specific peptide sequence-level identification statisticc
has value typeop some xsd doublec

MaxQuant-DIA scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003100

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

MaxQuant:feature intensityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001903

has super-classes
feature-level quantification datatypec
has value typeop some xsd doublec

MaxQuant:LFQ intensityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001902

has super-classes
quantification datatypec
has value typeop some xsd doublec

MaxQuant:MS/MS countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001904

has super-classes
quantification datatypec
has value typeop some xsd intc

MaxQuant:P-site localization probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001982

has super-classes
PTM localization PSM-level statisticc
has regexpop some regular expression for modification localization scoringc
has value typeop some xsd stringc

MaxQuant:P-site localization probability thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002564

has super-classes
PTM localization score thresholdc
has value typeop some xsd doublec

MaxQuant:PEPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001901

has super-classes
quantification datatypec
has value typeop some xsd doublec

MaxQuant:peptide counts (all)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001898

has super-classes
peptide-level quantification datatypec
has value typeop some xsd intc

MaxQuant:peptide counts (razor+unique)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001899

has super-classes
peptide-level quantification datatypec
has value typeop some xsd intc

MaxQuant:peptide counts (unique)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001897

has super-classes
peptide-level quantification datatypec
has value typeop some xsd intc

MaxQuant:Phospho (STY) Probabilitiesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001980

has super-classes
PTM localization PSM-level statisticc
has regexpop some regular expression for modification localization scoringc
has value typeop some xsd stringc

MaxQuant:Phospho (STY) Probabilities thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002566

has super-classes
PTM localization score thresholdc
has value typeop some xsd doublec

MaxQuant:Phospho (STY) Score Diffsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001981

has super-classes
PTM localization PSM-level statisticc
has value typeop some xsd stringc

MaxQuant:PTM Delta Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001983

has super-classes
PTM localization PSM-level statisticc
has regexpop some regular expression for modification localization scoringc
has value typeop some xsd stringc

MaxQuant:PTM Delta Score thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002565

has super-classes
PTM localization score thresholdc
has value typeop some xsd doublec

MaxQuant:PTM Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001979

has super-classes
PTM localization PSM-level statisticc
has value typeop some xsd stringc
has regexpop some regular expression for modification localization scoringc

MaxQuant:PTM Score thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002563

has super-classes
PTM localization score thresholdc
has value typeop some xsd doublec

MaxQuant:sequence lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001900

has super-classes
peptide-level quantification datatypec
has value typeop some xsd intc

McLafferty Rearrangementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000434

This child of the former purgatory term ion reaction was made obsolete.

MD-Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002537

has super-classes
PTM localization PSM-level statisticc
has regexpop some regular expression for modification localization scoringc
has value typeop some xsd stringc

MD-Score thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002558

has super-classes
PTM localization score thresholdc
has value typeop some xsd doublec

MD5c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000568

has super-classes
data file checksum typec
has value typeop some xsd stringc

meanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002962

has super-classes
study variable average functionc

mean charge arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002478

has super-classes
binary data arrayc

mean inverse reduced ion mobility arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003006

has super-classes
ion mobility arrayc
has_unitsop some volt-second per square centimeterc
has value typeop some xsd floatc

mean ion mobility arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002816

has super-classes
ion mobility arrayc
has_unitsop some u o 0000028c
has value typeop some xsd floatc
has_unitsop some u o 0000010c

mean ion mobility drift time arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002477

has super-classes
ion mobility arrayc
has_unitsop some u o 0000028c
has_unitsop some u o 0000010c
has value typeop some xsd floatc

mean of spectrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000575

has super-classes
spectra combinationc

measurement methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000596

has super-classes
part_ofop some spectrum generation informationc
has sub-classes
resolution measurement methodc

medianc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002883

has super-classes
study variable average functionc

median baseline reductionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001996

has super-classes
baseline reductionc

median of spectrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000573

has super-classes
spectra combinationc

membrane inletc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000396

has super-classes
inlet typec

membrane separatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000062

has super-classes
inlet typec

merge of runs of 1D gel bandsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001824

has super-classes
raw files group attributec

metabolic labeling 14N / 15N quantitation analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001839

has super-classes
quantitation analysis summaryc

metabolic labelling purityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002069

has super-classes
modification parametersc
has value typeop some xsd stringc

metabolic labelling: heavy N (mainly 15N)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002068

has super-classes
modification parametersc

metabolic labelling: natural N (mainly 14N)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002062

has super-classes
modification parametersc

metabolitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003036

has super-classes
small moleculec

MetaMorpheusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002826

has super-classes
analysis softwarec

MetaMorpheus:protein scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002828

has super-classes
search engine specific score for protein groupsc
has_orderop some higher score betterc
has value typeop some xsd doublec

MetaMorpheus:scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002827

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec
has_orderop some higher score betterc

metastable ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000368

This child of the former purgatory term ion stability type was made obsolete.

method file formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002128

has super-classes
file formatc
has sub-classes
TraML formatc

METLINc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000686

has super-classes
Agilent softwarec
analysis softwarec
data processing softwarec

MGF raw scansc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001415

has super-classes
spectrum identification result detailsc
has value typeop some xsd stringc

MGF scansc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001414

has super-classes
spectrum identification result detailsc
has value typeop some xsd stringc

microchannel plate detectorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000114

has super-classes
array detectorc

microelectrosprayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000397

has super-classes
electrospray ionizationc

microflexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000177

has super-classes
Bruker Daltonics flex seriesc

microflex IIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001550

has super-classes
Bruker Daltonics flex seriesc

microflex LRFc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001543

has super-classes
Bruker Daltonics flex seriesc

microflex LTc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000701

has super-classes
Bruker Daltonics flex seriesc

Micromass PKL formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000565

has super-classes
mass spectrometer file formatc

Microsoft Excelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002059

has super-classes
quantitation software namec

micrOTOFc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000702

has super-classes
Bruker Daltonics micrOTOF seriesc

micrOTOF IIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001540

has super-classes
Bruker Daltonics micrOTOF seriesc

microTOF LCc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000178

has super-classes
Bruker Daltonics micrOTOF seriesc

micrOTOF-Qc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000703

has super-classes
Bruker Daltonics micrOTOF seriesc

micrOTOF-Q IIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000704

has super-classes
Bruker Daltonics micrOTOF seriesc

micrOTOF-Q IIIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002299

has super-classes
Bruker Daltonics micrOTOF seriesc

micrOTOFcontrolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000726

has super-classes
Bruker softwarec
acquisition softwarec

MIDAS Workflow Designerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000673

has super-classes
SCIEX softwarec

minimum information standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000900

has super-classes
standardc

minimum number of enzymatic terminic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001578

has super-classes
common search engine input parameterc
has value typeop some xsd non negative integerc

minutec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000038

This term was made obsolete because it was redundant with Unit Ontology minute (UO:0000031).

modification indexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002504

has super-classes
modification parametersc
has value typeop some xsd intc

modification localization scoringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002491

has super-classes
special processingc

modification motifc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001875

has super-classes
modification specificity rulec
has value typeop some xsd stringc

modification parametersc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001055

has super-classes
part_ofop some spectrum interpretationc
has sub-classes
Fixed modificationc, Variable modificationc, metabolic labelling purityc, metabolic labelling: heavy N (mainly 15N)c, metabolic labelling: natural N (mainly 14N)c, modification indexc, modification position scorec, modification specificity rulec, neutral lossc, neutral lossc, tolerance on typesc

modification position scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002506

has super-classes
modification parametersc
has sub-classes
modification rescoring:false localization ratec

modification probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001876

has super-classes
modification specificity rulec

modification rescoring:false localization ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002507

has super-classes
modification position scorec
has regexpop some regular expression for modification localization scoringc
has value typeop some xsd stringc

modification specificity peptide C-termc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001190

has super-classes
modification specificity rulec

modification specificity peptide N-termc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001189

has super-classes
modification specificity rulec

modification specificity protein C-termc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002058

has super-classes
modification specificity rulec

modification specificity protein N-termc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002057

has super-classes
modification specificity rulec

modification specificity rulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001056

has super-classes
modification parametersc
has sub-classes
modification motifc, modification probabilityc, modification specificity peptide C-termc, modification specificity peptide N-termc, modification specificity protein C-termc, modification specificity protein N-termc

modified nucleic acid sequencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002030

has super-classes
peptide modification detailsc
has value typeop some xsd stringc

ModResc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001013

has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc
has regexpop some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional commentc

ModResPsic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001012

has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc
has regexpop some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional commentc

ModResUnimodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001027

has super-classes
PEFF file sequence entry termc
has regexpop some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional commentc
has value typeop some xsd stringc

modulation timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002042

has super-classes
run attributec
has value typeop some xsd stringc
has_unitsop some u o 0000031c
has_unitsop some u o 0000010c

molecular beam mass spectrometryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000226

This child of the former purgatory term mass spectrometer was made obsolete.

molecular entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000881

has super-classes
part_ofop some Proteomics Standards Initiative Mass Spectrometry Vocabulariesc
has sub-classes
atomc, ionc, moleculec

molecular entity attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003033

has super-classes
part_ofop some molecular entityc
has sub-classes
chemical formulac

molecular entity propertyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000861

has super-classes
part_ofop some molecular entityc
has sub-classes
collisional cross sectional areac, isoelectric pointc, molecular massc

molecular formulac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000866

has super-classes
chemical formulac
has value typeop some xsd stringc

molecular ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000369

This child of the former purgatory term ion chemical type was made obsolete.

molecular massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000224

has super-classes
molecular entity propertyc
has_unitsop some u o 0000002c
has value typeop some xsd floatc

moleculec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000859

has super-classes
molecular entityc
has sub-classes
adductc, isomerc, nucleic acidc, peptidec, polysaccharidec, proteinc, small moleculec

molecule taxonomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001089

has super-classes
protein-level identification attributec
database sequence detailsc
Sequence database filtersc
has value typeop some xsd stringc
has sub-classes
taxonomy nomenclaturec, taxonomy: NCBI TaxIDc, taxonomy: Swiss-Prot IDc, taxonomy: common namec, taxonomy: scientific namec

molecules per cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002513

has super-classes
quantification datatypec
has value typeop some xsd doublec

monoisotopic m/z deviationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003209

has super-classes
interpreted spectrum attributec
has value typeop some xsd floatc
has_unitsop some u o 0000169c
has_unitsop some m/zc

monoisotopic massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000225

This child of the former purgatory term ion attribute was made obsolete.
has super-classes
has value typeop some xsd floatc
has_unitsop some u o 0000002c

monosaccharidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003040

has super-classes
small moleculec

Morpheusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002661

has super-classes
analysis softwarec

Morpheus:Morpheus scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002662

has super-classes
PSM-level search engine specific statisticc
has_orderop some higher score betterc
has value typeop some xsd doublec

Morpheus:summed Morpheus scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002663

has super-classes
search engine specific score for protein groupsc
has_orderop some higher score betterc
has value typeop some xsd doublec

moving average smoothingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000785

has super-classes
smoothingc

moving beltc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000063

has super-classes
inlet typec

moving wirec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000064

has super-classes
inlet typec

MRMaidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002220

has super-classes
SRM softwarec

MRMaid:peptide scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002221

has super-classes
peptide sequence-level identification attributec
search engine specific score for proteinsc

MRMPilot Softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000666

has super-classes
SCIEX softwarec
analysis softwarec
data processing softwarec

MS Amanda csv formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002459

has super-classes
intermediate analysis formatc

ms levelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000511

has super-classes
spectrum attributec
has value typeop some xsd intc

MS-DIALc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003082

has super-classes
data processing softwarec
small molecule analysis softwarec

MS-GFc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002047

has super-classes
analysis softwarec

MS-GF+c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002048

has super-classes
analysis softwarec

MS-GF:DeNovoScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002050

has super-classes
search engine specific score for proteinsc
has value typeop some xsd intc

MS-GF:Energyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002051

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd non negative integerc

MS-GF:EValuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002053

has super-classes
PSM-level search engine specific statisticc
PSM-level e-valuec
has value typeop some xsd doublec
has_orderop some lower score betterc

MS-GF:PEPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002056

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

MS-GF:PepQValuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002055

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

MS-GF:QValuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002054

has super-classes
PSM-level search engine specific statisticc
PSM-level q-valuec
has value typeop some xsd doublec

MS-GF:RawScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002049

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd intc

MS-GF:SpecEValuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002052

has super-classes
PSM-level search engine specific statisticc
PSM-level e-valuec
has value typeop some xsd doublec
has_orderop some lower score betterc

ms-ms searchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001083

has super-classes
search typec

MS-Numpress linear prediction compressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002312

has super-classes
binary data compression typec

MS-Numpress linear prediction compression followed by zlib compressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002746

has super-classes
binary data compression typec

MS-Numpress positive integer compressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002313

has super-classes
binary data compression typec

MS-Numpress positive integer compression followed by zlib compressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002747

has super-classes
binary data compression typec

MS-Numpress short logged float compressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002314

has super-classes
binary data compression typec

MS-Numpress short logged float compression followed by zlib compressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002748

has super-classes
binary data compression typec

MS/MS in Spacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000335

This child of the former purgatory term m/z Separation Method was made obsolete.

MS/MS in Timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000334

This child of the former purgatory term m/z Separation Method was made obsolete.

MS1 feature areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001844

has super-classes
feature-level quantification datatypec
has value typeop some xsd doublec

MS1 feature maximum intensityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001843

has super-classes
feature-level quantification datatypec
has value typeop some xsd doublec

MS1 formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002597

has super-classes
mass spectrometer file formatc

MS1 label-based analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002018

has super-classes
quantitation analysis summaryc
has sub-classes
MS1 label-based peptide level quantitationc, MS1 label-based protein level quantitationc, MS1 label-based proteingroup level quantitationc, MS1 label-based raw feature quantitationc

MS1 label-based peptide level quantitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002002

has super-classes
MS1 label-based analysisc
has value typeop some xsd booleanc

MS1 label-based protein level quantitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002003

has super-classes
MS1 label-based analysisc
has value typeop some xsd booleanc

MS1 label-based proteingroup level quantitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002004

has super-classes
MS1 label-based analysisc
has value typeop some xsd booleanc

MS1 label-based raw feature quantitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002001

has super-classes
MS1 label-based analysisc
has value typeop some xsd booleanc

MS1 spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000579

has super-classes
mass spectrumc
has sub-classes
enhanced multiply charged spectrumc

MS2 formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001466

has super-classes
mass spectrometer file formatc

MS2 tag-based analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002023

has super-classes
quantitation analysis summaryc
has sub-classes
MS2 tag-based feature level quantitationc, MS2 tag-based peptide level quantitationc, MS2 tag-based protein level quantitationc, MS2 tag-based proteingroup level quantitationc

MS2 tag-based feature level quantitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002024

has super-classes
MS2 tag-based analysisc
has value typeop some xsd booleanc

MS2 tag-based peptide level quantitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002025

has super-classes
MS2 tag-based analysisc
has value typeop some xsd booleanc

MS2 tag-based protein level quantitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002026

has super-classes
MS2 tag-based analysisc
has value typeop some xsd booleanc

MS2 tag-based proteingroup level quantitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002027

has super-classes
MS2 tag-based analysisc
has value typeop some xsd booleanc

ms_deisotopec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002990

has super-classes
data processing softwarec

msalign formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002899

has super-classes
mass spectrometer file formatc

MSDKc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002645

has super-classes
analysis softwarec
data processing softwarec

MSFit:Mowse scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001501

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

MSFraggerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003014

has super-classes
analysis softwarec

msmsEval qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001358

has super-classes
spectrum quality descriptionsc
has value typeop some xsd doublec

MSn spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000580

has super-classes
mass spectrumc
has sub-classes
time-delayed fragmentation spectrumc

MSn-1 isolation window precursor purityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003167

has super-classes
interpreted spectrum attributec
has value typeop some xsd floatc

MSnbasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002870

has super-classes
analysis softwarec
data processing softwarec

MSPathFinderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002720

has super-classes
analysis softwarec

MSPathFinder:EValuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002722

has super-classes
PSM-level search engine specific statisticc
PSM-level e-valuec
has_orderop some lower score betterc
has value typeop some xsd doublec

MSPathFinder:PepQValuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002724

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

MSPathFinder:QValuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002723

has super-classes
PSM-level search engine specific statisticc
PSM-level q-valuec
has value typeop some xsd doublec

MSPathFinder:RawScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002725

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

MSPathFinder:SpecEValuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002721

has super-classes
PSM-level search engine specific statisticc
PSM-level e-valuec
has value typeop some xsd doublec
has_orderop some lower score betterc

MSPepSearch:scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002754

has super-classes
PSM-level search engine specific statisticc
has_orderop some higher score betterc
has_domainop some value between 0 and 1000 inclusivec

msPrefix precursor recalculationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000781

has super-classes
precursor recalculationc

MSQuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001977

has super-classes
analysis softwarec

MSQuant:PTM-scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001978

has super-classes
PTM localization PSM-level statisticc
has regexpop some regular expression for modification localization scoringc
has value typeop some xsd stringc

MSQuant:PTM-score thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002562

has super-classes
PTM localization score thresholdc
has value typeop some xsd doublec

multi-collectorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000115

has super-classes
detector typec

multidimensional chromatography modulation descriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002084

has super-classes
run attributec
has sub-classes
two-dimensional gas chromatography with discrete modulation time stepsc, two-dimensional gas chromatography with fixed modulation timec, two-dimensional liquid chromatography with discrete modulation time stepsc, two-dimensional liquid chromatography with fixed modulation timec

multiphoton ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000227

has super-classes
ionization typec

multiple enzyme combination rulesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001051

has super-classes
has value typeop some xsd stringc

multiple ion monitoringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000098

This former purgatory term was made obsolete.

multiple peak list nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000774

Used for conversion of peak list files with multiple spectra, i.e. MGF, PKL, merged DTA files. Index is the spectrum number in the file, starting from 0.
has super-classes
native spectrum identifier formatc

multiple peak list nativeID format, combined spectrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002653

Used for conversion of peak list files with multiple spectra, i.e. MGF, PKL, merged DTA files. Index is the spectrum number in the file, starting from 0.
has super-classes
native spectrum identifier format, combined spectrac
has value typeop some xsd stringc

multiple reaction monitoringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000099

This term was made obsolete because it was merged with selected reaction monitoring (MS:1000206).

multiple stage mass spectrometryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000270

This child of the former purgatory term m/z Separation Method was made obsolete.

MultiQuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000674

has super-classes
SCIEX softwarec
analysis softwarec
data processing softwarec

MyCompoundIDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002881

has super-classes
small molecule analysis softwarec

MyriMatchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001585

has super-classes
analysis softwarec

MyriMatch:MVHc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001589

has super-classes
PSM-level search engine specific statisticc

MyriMatch:mzFidelityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001590

has super-classes
PSM-level search engine specific statisticc

mz5 formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001881

has super-classes
mass spectrometer file formatc

mzIdentML formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002073

has super-classes
intermediate analysis formatc

mzidLibc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002237

has super-classes
analysis softwarec
has sub-classes
mzidLib:CombineSearchEnginesc, mzidLib:Csv2Mzidc, mzidLib:FalseDiscoveryRatec, mzidLib:InsertMetaDataFromFastac, mzidLib:Mzidentml2Csvc, mzidLib:Omssa2Mzidc, mzidLib:Perform emPAI on mzidc, mzidLib:ProteoGrouperc, mzidLib:Tandem2Mzidc, mzidLib:Thresholderc

mzidLib:CombineSearchEnginesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002246

has super-classes
mzidLibc

mzidLib:Csv2Mzidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002240

has super-classes
mzidLibc

mzidLib:FalseDiscoveryRatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002244

has super-classes
mzidLibc

mzidLib:InsertMetaDataFromFastac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002247

has super-classes
mzidLibc

mzidLib:Mzidentml2Csvc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002245

has super-classes
mzidLibc

mzidLib:Omssa2Mzidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002238

has super-classes
mzidLibc

mzidLib:Perform emPAI on mzidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002243

has super-classes
mzidLibc

mzidLib:ProteoGrouperc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002241

has super-classes
mzidLibc

mzidLib:Tandem2Mzidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002239

has super-classes
mzidLibc

mzidLib:Thresholderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002242

has super-classes
mzidLibc

MZminec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002342

has super-classes
analysis softwarec
data processing softwarec

mzML formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000584

has super-classes
mass spectrometer file formatc

mzML unique identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001530

A unique identifier of a spectrum stored in an mzML file.
has super-classes
spectra data detailsc

mzML unique identifier, combined spectrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002657

A unique identifier of a spectrum stored in an mzML file.
has super-classes
native spectrum identifier format, combined spectrac
has value typeop some xsd stringc

mzMLb formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002838

has super-classes
mass spectrometer file formatc

mzQC formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003160

has super-classes
quality control data formatc

mzQuantML formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002075

has super-classes
quantification file formatc

mzRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002869

has super-classes
analysis softwarec
data processing softwarec

MzStarc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000542

has super-classes
data processing softwarec

mzTabc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002601

has super-classes
tab delimited text formatc

MzWiffc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000591

has super-classes
data processing softwarec

n-terminal flanking residuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001112

has super-classes
peptide sequence-level identification attributec
peptide-to-protein mapping attributec
has value typeop some xsd stringc

NA sequencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001343

has super-classes
database sequence detailsc

named elementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003025

has super-classes
part_ofop some Proteomics Standards Initiative Mass Spectrometry Vocabulariesc
has sub-classes
named element in mzIdentMLc, named element in mzMLc

named element in mzIdentMLc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003026

has super-classes
named elementc
has sub-classes
Fixed modificationc, Variable modificationc

named element in mzMLc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003027

has super-classes
named elementc

nanoACQUITY UPLCc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001766

has super-classes
Waters instrument modelc

nanoACQUITY UPLC System with 1D Technologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001767

has super-classes
Waters instrument modelc

nanoACQUITY UPLC with HDX Technologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001768

has super-classes
Waters instrument modelc

nanoelectrosprayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000398

has super-classes
electrospray ionizationc

nanospray inletc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000485

has super-classes
electrospray inletc

native source pathc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002046

has super-classes
spectrum generation informationc
has value typeop some xsd stringc

native spectrum identifier formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000767

has super-classes
part_ofop some source data filec
has sub-classes
Agilent MassHunter nativeID formatc, Bruker BAF nativeID formatc, Bruker Container nativeID formatc, Bruker FID nativeID formatc, Bruker TDF nativeID formatc, Bruker U2 nativeID formatc, Bruker/Agilent YEP nativeID formatc, Mascot query numberc, SCIEX TOF/TOF T2D nativeID formatc, SCIEX TOF/TOF nativeID formatc, Scaffold nativeID formatc, Shimadzu Biotech QTOF nativeID formatc, Shimadzu Biotech nativeID formatc, Thermo nativeID formatc, UIMF nativeID formatc, WIFF nativeID formatc, Waters nativeID formatc, multiple peak list nativeID formatc, no nativeID formatc, scan number only nativeID formatc, single peak list nativeID formatc, spectrum from ProteinScape database nativeID formatc, spectrum from database integer nativeID formatc, spectrum from database string nativeID formatc, spectrum identifier nativeID formatc

native spectrum identifier format, combined spectrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002646

has super-classes
part_ofop some source data filec
has sub-classes
Bruker BAF nativeID format, combined spectrac, Bruker FID nativeID format, combined spectrac, Bruker TDF nativeID format, combined spectrac, Bruker/Agilent YEP nativeID format, combined spectrac, Thermo nativeID format, combined spectrac, WIFF nativeID format, combined spectrac, Waters nativeID format, combined spectrac, multiple peak list nativeID format, combined spectrac, mzML unique identifier, combined spectrac, scan number only nativeID format, combined spectrac, single peak list nativeID format, combined spectrac, spectrum identifier nativeID format, combined spectrac

NBRF PIRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001353

has super-classes
database file formatsc

NCBI *.p*c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001350

has super-classes
database file formatsc

NcbiTaxIdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001003

has super-classes
PEFF file sequence entry termc
has value typeop some xsd intc

negative ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000370

This child of the former purgatory term ion chemical type was made obsolete.

Negative Ion chemical ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000271

has super-classes
ionization typec

negative ion modec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000076

This term was made obsolete because it was replaced by negative scan (MS:1000129).

negative mode adduct ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002808

has super-classes
adduct ionc
has sub-classes
M-H ionc

negative scanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000129

has super-classes
scan polarityc
chromatogram attributec

neptunec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000179

has super-classes
Thermo Finnigan instrument modelc

neutral lossc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000336

has super-classes
modification parametersc
has value typeop some xsd stringc
has sub-classes
H2O neutral lossc, H3PO4 neutral lossc, NH3 neutral lossc

neutral lossc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001061

has super-classes
modification parametersc

neutralization reionization mass spectrometryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000272

has super-classes
ionization typec

NG-5400c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000180

has super-classes
Waters instrument modelc

NH3 neutral lossc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002456

This term was obsoleted because it should be replaced by MS:1000336 with value NH3.
has super-classes
neutral lossc
ion series considered in searchc

nier-johnson geometryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000296

This former purgatory term was made obsolete.

NIST msp commentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003102

has super-classes
spectrum attributec
has value typeop some xsd stringc

NIST MSP formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002751

has super-classes
database file formatsc

NIST MSPepSearchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002750

has super-classes
analysis softwarec

nitrogen rulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000228

This child of the former purgatory term ion reaction was made obsolete.

no cleavagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001955

has super-classes
cleavage agent namec

no combinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000795

has super-classes
spectra combinationc

no compressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000576

has super-classes
binary data compression typec

No fixed modifications searchedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002453

has super-classes
common search engine input parameterc

no modification thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002672

has super-classes
PTM localization score thresholdc

no nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000824

has super-classes
native spectrum identifier formatc

no peptide-level thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002502

has super-classes
peptide sequence-level identification attributec

no PSM thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002501

has super-classes
PSM-level result list statisticc

No PTMs are included in the datasetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002864

has super-classes
Experiment additional parameterc

no special processingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002495

has super-classes
special processingc

no thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001494

has super-classes
statistical thresholdc

No variable modifications searchedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002454

has super-classes
common search engine input parameterc

NoEnzymec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001091

This term was made obsolete because it is ambiguous and is replaced by NoCleavage (MS:1001955) and unspecific cleavage (MS:1001956).
has super-classes
cleavage agent namec

noise arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002742

has super-classes
binary data arrayc

NoiseFilterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000762

This term was made obsolete, because it is replaced by the terms under the 'TOPP noise filter' (MS:1002131) branch.
has super-classes
TOPP softwarec

nominal massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000229

This child of the former purgatory term ion attribute was made obsolete.
has super-classes
has value typeop some xsd floatc
has_unitsop some u o 0000002c

Non peer-reviewed datasetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002855

has super-classes
Experiment additional parameterc

non-classical ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000371

This child of the former purgatory term ion chemical type was made obsolete.

non-identified ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001240

has super-classes
product ion attributec

non-leading proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002402

has super-classes
protein group or subset relationshipc

non-standard data arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000786

has super-classes
binary data arrayc
has value typeop some xsd stringc

None ??c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000104

This term was made obsolete because .

normalization to mean of sum of all proteinsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001862

has super-classes
quantification data processingc

normalized collision energyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000138

has super-classes
precursor activation attributec
has value typeop some xsd floatc
has_unitsop some u o 0000187c
has sub-classes
percent collision energy ramp endc, percent collision energy ramp startc

normalized peptide valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001850

has super-classes
peptide-level quantification datatypec
has value typeop some xsd doublec

normalized protein valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001852

has super-classes
protein-level quantification datatypec
has value typeop some xsd doublec

normalized retention timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000896

has super-classes
retention timec
has_unitsop some u o 0000010c
has_unitsop some u o 0000031c
has value typeop some xsd floatc

normalized spectral abundance factorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002547

has super-classes
quantification datatypec

normalized XIC areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001859

has super-classes
quantification datatypec
has value typeop some xsd doublec

Novorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002984

has super-classes
analysis softwarec

nth generation product ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000337

This child of the former purgatory term product ion was made obsolete.

nth generation product ion scanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000338

This former purgatory term was made obsolete.

nth generation product ion spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000339

This term was made obsolete because it was merged with MSn spectrum (MS:1000580).

nucleic acidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003041

has super-classes
moleculec

nucleic acid base modificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002028

has super-classes
peptide modification detailsc
has value typeop some xsd stringc

null-terminated ASCII stringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001479

has super-classes
binary data typec

number of data pointsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003060

has super-classes
spectrum propertyc

number of decoy sequencesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002437

has super-classes
search database detailsc
has value typeop some xsd positive integerc

number of detector countsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000131

has super-classes
intensity unitc

number of distinct protein sequencesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002408

has super-classes
protein group-level result list attributec
has value typeop some xsd intc

number of enzymatic terminic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003048

has super-classes
peptide-to-protein mapping attributec

number of mantissa bits truncatedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003092

has super-classes
binary data compression parameterc
has value typeop some xsd positive integerc

number of matched peaksc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001121

has super-classes
peptide sequence-level identification attributec
has value typeop some xsd non negative integerc

number of missed cleavagesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003044

has super-classes
peptide attributec

number of molecular hypothesis consideredc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001177

has super-classes
search statisticsc
has value typeop some xsd non negative integerc

number of peaksc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003059

has super-classes
spectrum propertyc

number of peaks submittedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001124

has super-classes
peptide sequence-level identification attributec
has value typeop some xsd non negative integerc

number of peaks usedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001123

has super-classes
peptide sequence-level identification attributec
has value typeop some xsd non negative integerc

number of peptide seqs compared to each spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001030

has super-classes
search database detailsc
spectrum identification result detailsc
has value typeop some xsd non negative integerc

number of precursor ion observationsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002228

has super-classes
SRM transition attributec
has value typeop some xsd intc

number of product ion observationsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002227

has super-classes
SRM transition attributec
has value typeop some xsd intc

number of replicate spectra availablec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003069

has super-classes
spectrum aggregation attributec

number of replicate spectra usedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003070

has super-classes
spectrum aggregation attributec

number of residuesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003043

has super-classes
peptide attributec

number of sequences searchedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001029

has super-classes
search database detailsc
has value typeop some xsd positive integerc

number of spectra searchedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002434

has super-classes
search input detailsc
has value typeop some xsd intc

number of unmatched peaksc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001362

has super-classes
PSM-level attributec
has value typeop some xsd non negative integerc

NumberOfEntriesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000015

has super-classes
PEFF file header section termc
has value typeop some xsd integerc

numerator data type attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002151

has super-classes
quantification object attributec

numeric attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003173

has super-classes
object attributec
has value typeop some xsd floatc
has value typeop some xsd intc

object attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000547

has super-classes
part_ofop some spectrum generation informationc
has sub-classes
chromatogram attributec, contact attributec, inlet attributec, instrument attributec, ion selection attributec, isolation window attributec, numeric attributec, run attributec, sample attributec, sample preparationc, scan attributec, selection window attributec

observed spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003073

has super-classes
spectrum origin typec

OBSOLETE charge numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000211

has super-classes
has value typeop some xsd intc

odd-electron rulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000230

This child of the former purgatory term ion reaction was made obsolete.

offset voltagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001879

has super-classes
source attributec
has_unitsop some u o 0000218c
has value typeop some xsd floatc

OMEGAc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000181

has super-classes
IonSpec instrument modelc

OMEGA-2001c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000182

has super-classes
IonSpec instrument modelc

OmniFlexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000183

has super-classes
Bruker Daltonics flex seriesc

OMSSAc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001475

has super-classes
analysis softwarec

OMSSA csv formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001399

has super-classes
intermediate analysis formatc

OMSSA e-value thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001449

has super-classes
OMSSA input parameterc
has value typeop some xsd doublec

OMSSA input parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002099

has super-classes
search engine specific input parameterc
has sub-classes
OMSSA e-value thresholdc

OMSSA xml formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001400

has super-classes
intermediate analysis formatc

OMSSA:evaluec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001328

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

OMSSA:pvaluec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001329

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

one sample runc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001818

has super-classes
raw file attributec

onium ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000372

This child of the former purgatory term ion chemical type was made obsolete.

open splitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000065

has super-classes
inlet typec

OpenMS file formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002822

has super-classes
file formatc
has sub-classes
consensusXMLc, featureXMLc, idXMLc

OpenMS:Best PSM Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003114

has super-classes
search engine specific peptide sequence-level identification statisticc
has value typeop some xsd doublec

OpenMS:ConsensusID PEPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003113

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

OpenMS:LFQ intensityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003120

has super-classes
quantification datatypec
has value typeop some xsd doublec

OpenMS:LFQ spectral countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003121

has super-classes
quantification datatypec
has value typeop some xsd doublec

OpenMS:Target-decoy peptide q-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003116

has super-classes
search engine specific peptide sequence-level identification statisticc
has value typeop some xsd doublec

OpenMS:Target-decoy protein q-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003117

has super-classes
search engine specific score for proteinsc
has value typeop some xsd doublec

OpenMS:Target-decoy PSM q-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003115

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

OpenPepXLc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003023

has super-classes
TOPP softwarec

OpenPepXL:scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003024

has super-classes
PSM-level search engine specific statisticc
search engine specific scorec
has value typeop some xsd doublec
has_orderop some higher score betterc

OpenXQuestc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002673

has super-classes
TOPP softwarec

OpenXQuest:combined scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002681

has super-classes
PSM-level search engine specific statisticc
search engine specific scorec
has value typeop some xsd doublec
has_orderop some higher score betterc

OpenXQuest:intsumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002685

has super-classes
PSM-level search engine specific statisticc
search engine specific scorec
has_domainop some value greater than zeroc
has value typeop some xsd doublec
has_orderop some higher score betterc

OpenXQuest:match-oddsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002684

has super-classes
PSM-level search engine specific statisticc
search engine specific scorec
has_orderop some higher score betterc
has_domainop some value greater than zeroc
has value typeop some xsd doublec

OpenXQuest:wTICc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002686

has super-classes
PSM-level search engine specific statisticc
search engine specific scorec
has value typeop some xsd doublec
has_orderop some higher score betterc
has_domainop some value between 0 and 1 inclusivec

OpenXQuest:xcorr commonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002683

has super-classes
PSM-level search engine specific statisticc
search engine specific scorec
has value typeop some xsd doublec
has_orderop some higher score betterc

OpenXQuest:xcorr xlinkc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002682

has super-classes
PSM-level search engine specific statisticc
search engine specific scorec
has value typeop some xsd doublec
has_orderop some higher score betterc

OptionalTagDefc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000023

has super-classes
PEFF file header section termc
has value typeop some xsd stringc

orbitrapc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000484

has super-classes
mass analyzer typec

Orbitrap Eclipsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003029

has super-classes
Thermo Scientific instrument modelc

Orbitrap Exploris 120c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003095

has super-classes
Thermo Scientific instrument modelc

Orbitrap Exploris 240c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003094

has super-classes
Thermo Scientific instrument modelc

Orbitrap Exploris 480c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003028

has super-classes
Thermo Scientific instrument modelc

Orbitrap Fusionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002416

has super-classes
Thermo Scientific instrument modelc

Orbitrap Fusion ETDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002417

has super-classes
Thermo Scientific instrument modelc

Orbitrap Fusion Lumosc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002732

has super-classes
Thermo Scientific instrument modelc

Orbitrap ID-Xc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003112

has super-classes
Thermo Scientific instrument modelc

Original datac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002868

has super-classes
Experiment additional parameterc

original nucleic acid sequencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002029

has super-classes
peptide modification detailsc
has value typeop some xsd stringc

orthogonal extractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000317

This child of the former purgatory term m/z Separation Method was made obsolete.

Other type file URIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002851

has super-classes
Associated file URIc
has value typeop some xsd stringc

overlayer MALDI sample preparationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001990

has super-classes
matrix application typec

p-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001191

This term was made obsolete because now is split into peptide and protein terms.
has super-classes
peptide sequence-level identification statisticc
protein identification confidence metricc
has value typeop some xsd doublec

p-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002072

has super-classes
quantification datatypec
has_domainop some value between 0 and 1 inclusivec
has value typeop some xsd doublec
has sub-classes
ANOVA p-valuec, t-test p-valuec

p-value (protein diff from 1 randomly)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001136

This term was made obsolete because it is replaced by 't-test p-value' (MS:1001855).
has super-classes
protein-level quantification datatypec
has value typeop some xsd doublec

PAnalyzerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002076

has super-classes
analysis softwarec

PAnalyzer:ambiguous group memberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002216

has super-classes
protein inference confidence categoryc
has value typeop some xsd stringc

PAnalyzer:conclusive proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002213

has super-classes
protein inference confidence categoryc
has value typeop some xsd stringc

PAnalyzer:indistinguishable proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002214

has super-classes
protein inference confidence categoryc
has value typeop some xsd stringc

PAnalyzer:non-conclusive proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002215

has super-classes
protein inference confidence categoryc
has value typeop some xsd stringc

Panorama Public dataset identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002872

has super-classes
external reference identifierc
has value typeop some xsd stringc

Panorama Public dataset URIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002873

has super-classes
external reference identifierc
has value typeop some xsd any u r ic

Paragon input parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002421

has super-classes
search engine specific input parameterc
has sub-classes
Paragon: FDR analysisc, Paragon: ID focusc, Paragon: background correctionc, Paragon: bias correctionc, Paragon: channel to use as denominator in ratiosc, Paragon: cysteine alkylationc, Paragon: instrument settingc, Paragon: quantitationc, Paragon: sample typec, Paragon: search effortc, Paragon:special factorc

Paragon: background correctionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002429

has super-classes
Paragon input parameterc
has value typeop some xsd booleanc

Paragon: bias correctionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002430

has super-classes
Paragon input parameterc
has value typeop some xsd booleanc

Paragon: channel to use as denominator in ratiosc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002431

has super-classes
Paragon input parameterc
has value typeop some xsd stringc

Paragon: cysteine alkylationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002423

has super-classes
Paragon input parameterc
has value typeop some xsd stringc

Paragon: digestionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002436

has super-classes
search input detailsc
has value typeop some xsd stringc

Paragon: FDR analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002427

has super-classes
Paragon input parameterc
has value typeop some xsd booleanc

Paragon: ID focusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002426

has super-classes
Paragon input parameterc
has value typeop some xsd stringc

Paragon: instrument settingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002424

has super-classes
Paragon input parameterc
has value typeop some xsd stringc

Paragon: modified data dictionary or parameter translationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002433

has super-classes
search engine specific input metadatac
has value typeop some xsd booleanc

Paragon: quantitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002428

has super-classes
Paragon input parameterc
has value typeop some xsd booleanc

Paragon: sample typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002422

has super-classes
Paragon input parameterc
has value typeop some xsd stringc

Paragon: search effortc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002425

has super-classes
Paragon input parameterc
has value typeop some xsd stringc

Paragon:confidencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001167

has super-classes
search engine specific score for proteinsc
has value typeop some xsd doublec

Paragon:contribc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001170

has super-classes
search engine specific score for proteinsc
has value typeop some xsd doublec

Paragon:expression change p-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001169

has super-classes
search engine specific score for proteinsc
has value typeop some xsd doublec

Paragon:expression error factorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001168

has super-classes
search engine specific score for proteinsc
has value typeop some xsd doublec

Paragon:scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001166

has super-classes
search engine specific score for proteinsc
has value typeop some xsd doublec

Paragon:special factorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002447

has super-classes
Paragon input parameterc
has value typeop some xsd stringc

Paragon:total protscorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001165

has super-classes
search engine specific score for proteinsc
search engine specific score for protein groupsc
has value typeop some xsd doublec

Paragon:unused protscorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001164

has super-classes
search engine specific score for proteinsc
search engine specific score for protein groupsc
has value typeop some xsd doublec

param: a ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001108

has super-classes
ion series considered in searchc

param: a ion-H2O DEPRECATEDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001148

has super-classes
ions series considered in searchc

param: a ion-NH3 DEPRECATEDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001146

has super-classes
ions series considered in searchc

param: b ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001118

has super-classes
ion series considered in searchc

param: b ion-H2O DEPRECATEDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001150

has super-classes
ions series considered in searchc

param: b ion-H3PO4 DEPRECATEDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002450

has super-classes
ions series considered in searchc

param: b ion-NH3 DEPRECATEDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001149

has super-classes
ions series considered in searchc

param: c ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001119

has super-classes
ion series considered in searchc

param: d ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001258

has super-classes
ion series considered in searchc

param: immonium ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001259

has super-classes
ion series considered in searchc

param: internal ya ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001407

has super-classes
ion series considered in searchc

param: internal yb ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001406

has super-classes
ion series considered in searchc

param: v ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001257

has super-classes
ion series considered in searchc

param: w ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001260

has super-classes
ion series considered in searchc

param: x ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001261

has super-classes
ion series considered in searchc

param: y ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001262

has super-classes
ion series considered in searchc

param: y ion-H2O DEPRECATEDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001152

This term was made obsolete - use MS:1001262 and MS:1002455 instead.
has super-classes
ions series considered in searchc

param: y ion-H3PO4 DEPRECATEDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002451

has super-classes
ions series considered in searchc

param: y ion-NH3 DEPRECATEDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001151

has super-classes
ions series considered in searchc

param: z ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001263

has super-classes
ion series considered in searchc

param: z+1 ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001408

has super-classes
ion series considered in searchc

param: z+2 ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001409

has super-classes
ion series considered in searchc

parameter filec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000740

has super-classes
mass spectrometer file formatc

parent mass type averagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001212

has super-classes
mass type settingsc

parent mass type monoc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001211

has super-classes
mass type settingsc

partial charge transfer reactionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000436

This child of the former purgatory term ion reaction was made obsolete.

particle beamc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000066

has super-classes
inlet typec

PASSEL experiment URIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002420

has super-classes
external reference identifierc
has value typeop some xsd any u r ic

PASSEL transition group browser URIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002031

has super-classes
external reference identifierc
has value typeop some xsd any u r ic

PatternLabc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003108

has super-classes
quantitation software namec
analysis softwarec

paul ion trapc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000297

This term was made obsolete because it is redundant to quadrupole ion trap.

PDA spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000620

This term was made obsolete because it was replaced by absorption spectrum (MS:1000806).
has super-classes
data file contentc
spectrum typec

PEc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001009

has super-classes
PEFF file sequence entry termc
has value typeop some xsd intc

peakc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000231

has super-classes
part_ofop some spectrumc
has sub-classes
base peakc, isotopic ion MS peakc, isotopomer peakc

peak areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001845

This term was made obsolete because it was a duplication of MS:1001844.
has super-classes
quantification datatypec
has value typeop some xsd doublec

peak intensityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000042

has super-classes
ion selection attributec
has_unitsop some percent of base peakc
has_unitsop some counts per secondc
has_unitsop some u o 0000269c
part_ofop some peakc
has_unitsop some number of detector countsc
has value typeop some xsd floatc
has_unitsop some percent of base peak times 100c

peak intensityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000232

This term was made obsolete because it was replaced by base peak intensity (MS:1000505).

peak intensity rankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000906

has super-classes
ion selection attributec
has value typeop some xsd positive integerc
part_ofop some peakc

Peak list file URIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002850

has super-classes
Associated file URIc
has value typeop some xsd stringc

peak list raw scansc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000798

This is the preferred storage place for the spectrum RAWSCANS attribute from an MGF peak list.
has super-classes
spectrum identification result detailsc
spectrum propertyc
has value typeop some xsd stringc

peak list scansc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000797

This is the preferred storage place for the spectrum SCANS attribute from an MGF peak list.
has super-classes
spectrum identification result detailsc
spectrum propertyc
has value typeop some xsd stringc

peak pickingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000035

has super-classes
data processing actionc
has sub-classes
area peak pickingc, height peak pickingc

peak targeting suitability rankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000907

has super-classes
ion selection attributec
part_ofop some peakc
has value typeop some xsd positive integerc

PeakForestc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003232

has super-classes
analysis softwarec
small molecule analysis softwarec
library creation softwarec

PeakPickerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000763

This term was made obsolete, because it is replaced by the terms under the 'TOPP peak picker' (MS:1002134) branch.
has super-classes
TOPP softwarec

PEAKS Nodec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001948

has super-classes
quantitation software namec
analysis softwarec
data processing softwarec

PEAKS Onlinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001947

has super-classes
quantitation software namec
analysis softwarec
data processing softwarec

PEAKS Studioc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001946

has super-classes
quantitation software namec
analysis softwarec
data processing softwarec

PEAKS:inChorusPeptideScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002448

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

PEAKS:inChorusProteinScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002449

has super-classes
search engine specific score for proteinsc
has value typeop some xsd doublec

PEAKS:peptideScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001950

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

PEAKS:proteinScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001951

has super-classes
search engine specific score for proteinsc
has value typeop some xsd doublec

Peer-reviewed datasetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002854

has super-classes
Experiment additional parameterc

PEFF CV termc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000001

has super-classes
part_ofop some Proteomics Standards Initiative Mass Spectrometry Vocabulariesc
has sub-classes
PEFF file header section termc, PEFF file sequence entry termc

PEFF file header section termc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000002

has super-classes
PEFF CV termc
has sub-classes
Conversionc, DatabaseDescriptionc, DbDatec, DbDescriptionc, DbNamec, DbSourcec, DbVersionc, Decoyc, GeneralCommentc, HasAnnotationIdentifiersc, NumberOfEntriesc, OptionalTagDefc, Prefixc, ProteoformDbc, SequenceTypec, SpecificKeyc, SpecificValuec

PEFF file sequence entry termc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000003

has super-classes
PEFF CV termc
has sub-classes
AltACc, CCc, Commentc, Conflictc, Crc64c, DbUniqueIdc, DisulfideBondc, Domainc, EVc, GNamec, GOc, IDc, KWc, Lengthc, ModResc, ModResPsic, ModResUnimodc, NcbiTaxIdc, PEc, PEFF molecule processing keywordc, PNamec, Processedc, Proteoformc, SVc, SeqStatusc, TaxNamec, Variantc, VariantComplexc, VariantSimplec, XRefc

PEFF formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001462

has super-classes
database file formatsc

PEFF molecule processing keywordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001032

has super-classes
PEFF file sequence entry termc
has sub-classes
initiator methioninec, mature proteinc, propeptidec, signal peptidec, transit peptidec

Pegasusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001803

has super-classes
LECO instrument modelc

Pegasus 4Dc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001945

has super-classes
LECO instrument modelc

Pegasus BTc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002719

has super-classes
LECO instrument modelc

Pegasus HRTc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001801

has super-classes
LECO instrument modelc

Pegasus IIIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002278

has super-classes
LECO instrument modelc

penning ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000399

has super-classes
ionization typec

pep:FDR thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001448

has super-classes
peptide-level statistical thresholdc
has value typeop some xsd doublec

PepFinderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002524

has super-classes
data processing softwarec

Pepitomec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001588

has super-classes
analysis softwarec

PepNovoc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002982

has super-classes
analysis softwarec

PepsinAc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001311

has super-classes
cleavage agent namec
has regexpop some (?<=[FL])c

peptidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000860

has super-classes
moleculec
has sub-classes
peptidoformc, razor peptidec

peptide attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000887

has super-classes
part_ofop some peptidec
has sub-classes
number of missed cleavagesc, number of residuesc, peptide-to-protein mappingc

peptide attribute calculation softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000873

has super-classes
softwarec
has sub-classes
SSRCalcc

peptide consensus attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002116

has super-classes
quantification object attributec

peptide consensus list attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002115

has super-classes
quantification object attributec

peptide consensus m/zc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002065

has super-classes
peptide-level quantification datatypec
has value typeop some xsd doublec

peptide consensus RTc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002064

has super-classes
peptide-level quantification datatypec
has value typeop some xsd doublec

peptide descriptionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001355

has super-classes
peptide sequence-level identification attributec

peptide end on chromosomec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002640

has super-classes
proteogenomics attributec
has value typeop some xsd intc

peptide exon countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002641

has super-classes
proteogenomics attributec
has value typeop some xsd intc

peptide exon nucleotide sizesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002642

has super-classes
proteogenomics attributec
has value typeop some xsd stringc

peptide group IDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002520

has super-classes
peptide sequence-level identification attributec
has value typeop some xsd stringc

peptide ion interpretation formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003104

has super-classes
ion interpretation formatc

peptide ion-level spectral countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002734

has super-classes
peptide-level quantification datatypec
has value typeop some xsd intc

peptide level scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002499

This term was obsoleted because it was never intended to go in the CV.
has super-classes
search engine specific peptide sequence-level identification statisticc

peptide modification detailsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001471

has super-classes
part_ofop some spectrum interpretationc
has sub-classes
PTM scoring algorithm versionc, fragment neutral lossc, modified nucleic acid sequencec, nucleic acid base modificationc, original nucleic acid sequencec, precursor neutral lossc, unidentified modification monoisotopic mass deltac, unknown modificationc

peptide passes thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002500

has super-classes
peptide sequence-level identification attributec
has value typeop some xsd booleanc

peptide ratioc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001132

has super-classes
peptide-level quantification datatypec
has value typeop some xsd doublec

peptide raw areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001130

This term was made obsolete because it is replaced by 'MS1 feature area' (MS:1001844).
has super-classes
peptide-level quantification datatypec
has value typeop some xsd doublec

peptide sequence-level e-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001872

has super-classes
peptide sequence-level identification statisticc
has value typeop some xsd doublec
has_domainop some value greater than zeroc

peptide sequence-level global confidencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002463

has super-classes
peptide sequence-level result list statisticc

peptide sequence-level global FDRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001364

has super-classes
peptide sequence-level result list statisticc
has value typeop some xsd doublec
has_domainop some value between 0 and 1 inclusivec

peptide sequence-level global FNRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002462

has super-classes
peptide sequence-level result list statisticc
has_domainop some value between 0 and 1 inclusivec

peptide sequence-level identification attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001105

has super-classes
single identification result attributec
has sub-classes
MRMaid:peptide scorec, PSM is used for peptide-level scoringc, c-terminal flanking residuec, decoy peptidec, ions series consideredc, n-terminal flanking residuec, no peptide-level thresholdc, number of matched peaksc, number of peaks submittedc, number of peaks usedc, peptide descriptionsc, peptide group IDc, peptide passes thresholdc, peptide sequence-level identification statisticc, peptide sharing detailsc, proteogenomics attributec, retention time(s)c, second-pass peptide identificationc, theoretical massc

peptide sequence-level identification statisticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001092

has super-classes
peptide sequence-level identification attributec
has sub-classes
Expect valuec, confidence scorec, local FDRc, manual validationc, p-valuec, peptide sequence-level e-valuec, peptide sequence-level local FDRc, peptide sequence-level p-valuec, peptide sequence-level probabilityc, search engine specific peptide sequence-level identification statisticc

peptide sequence-level local FDRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002359

has super-classes
peptide sequence-level identification statisticc
has value typeop some xsd doublec
has_domainop some value between 0 and 1 inclusivec

peptide sequence-level p-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001870

has super-classes
peptide sequence-level identification statisticc
has value typeop some xsd doublec
has_domainop some value between 0 and 1 inclusivec

peptide sequence-level probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002362

has super-classes
peptide sequence-level identification statisticc
has_domainop some value between 0 and 1 inclusivec
has value typeop some xsd doublec

peptide sequence-level result list attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002702

has super-classes
result list attributec
has sub-classes
peptide sequence-level result list statisticc

peptide sequence-level result list statisticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002703

has super-classes
peptide sequence-level result list attributec
has sub-classes
peptide sequence-level global FDRc, peptide sequence-level global FNRc, peptide sequence-level global confidencec

peptide shared in multiple proteinsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001175

has super-classes
peptide sharing detailsc

peptide sharing detailsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001127

has super-classes
peptide sequence-level identification attributec
has sub-classes
peptide shared in multiple proteinsc, peptide unique to one proteinc

peptide spectrum match scoring algorithmc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001961

has super-classes
part_ofop some spectrum generation informationc
has value typeop some xsd stringc

peptide start on chromosomec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002639

This term was obsoleted because it contains redundant info contained in term MS:1002643 - peptide start positions on chromosome.
has super-classes
proteogenomics attributec
has value typeop some xsd intc

peptide start positions on chromosomec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002643

has super-classes
proteogenomics attributec
has value typeop some xsd stringc

peptide unique to one proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001363

has super-classes
peptide sharing detailsc

peptide-level quantification datatypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002737

has super-classes
quantification datatypec
has sub-classes
MaxQuant:peptide counts (all)c, MaxQuant:peptide counts (razor+unique)c, MaxQuant:peptide counts (unique)c, MaxQuant:sequence lengthc, Progenesis:peptide countc, Progenesis:peptide normalised abundancec, Progenesis:peptide raw abundancec, error on peptide areac, error on peptide ratioc, normalized peptide valuec, peptide consensus RTc, peptide consensus m/zc, peptide ion-level spectral countc, peptide ratioc, peptide raw areac, peptide-level spectral countc, sequence-level spectral countc, total XIC areac

peptide-level scoringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002490

has super-classes
special processingc
has sub-classes
ProteinProphet:peptide group weightc, ProteinProphet:peptide weightc

peptide-level spectral countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002733

has super-classes
peptide-level quantification datatypec
has value typeop some xsd intc

peptide-level statistical thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002484

has super-classes
spectrum identification statistical thresholdc
has sub-classes
distinct peptide-level q-valuec, pep:FDR thresholdc

peptide-to-protein mappingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003045

has super-classes
peptide attributec
has sub-classes
peptide-to-protein mapping attributec

peptide-to-protein mapping attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003046

has super-classes
peptide-to-protein mappingc
has sub-classes
c-terminal flanking residuec, n-terminal flanking residuec, number of enzymatic terminic, protein accessionc, protein sequence offsetc

peptide:Ascorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002551

has super-classes
PTM localization distinct peptide-level statisticc
has regexpop some regular expression for modification localization scoringc
has value typeop some xsd stringc

peptide:D-Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002553

has super-classes
PTM localization distinct peptide-level statisticc
has regexpop some regular expression for modification localization scoringc
has value typeop some xsd stringc

peptide:H-Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002552

has super-classes
PTM localization distinct peptide-level statisticc
has value typeop some xsd stringc
has regexpop some regular expression for modification localization scoringc

peptide:MD-Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002554

has super-classes
PTM localization distinct peptide-level statisticc
has regexpop some regular expression for modification localization scoringc
has value typeop some xsd stringc

peptide:phosphoRS scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002550

has super-classes
PTM localization distinct peptide-level statisticc
has value typeop some xsd stringc
has regexpop some regular expression for modification localization scoringc

PeptideAtlas dataset URIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002032

has super-classes
external reference identifierc
has value typeop some xsd any u r ic

PeptideProphetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002287

has super-classes
Trans-Proteomic Pipeline softwarec

PeptideShakerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002458

has super-classes
analysis softwarec

PeptideShaker peptide confidencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002469

has super-classes
search engine specific score for proteinsc
has_orderop some higher score betterc
has value typeop some xsd floatc

PeptideShaker peptide confidence typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002541

has super-classes
search engine specific peptide sequence-level identification statisticc
has value typeop some xsd stringc

PeptideShaker peptide scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002468

has super-classes
search engine specific peptide sequence-level identification statisticc
search engine specific score for proteinsc
has value typeop some xsd floatc
has_orderop some higher score betterc

PeptideShaker protein confidence typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002542

has super-classes
single protein identification statisticc
has value typeop some xsd stringc

PeptideShaker protein group confidencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002471

has super-classes
search engine specific score for proteinsc
has value typeop some xsd floatc
has_orderop some higher score betterc

PeptideShaker protein group scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002470

has super-classes
search engine specific score for proteinsc
search engine specific score for protein groupsc
has value typeop some xsd floatc
has_orderop some higher score betterc

PeptideShaker PSM confidencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002467

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd floatc
has_orderop some higher score betterc

PeptideShaker PSM confidence typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002540

has super-classes
PSM-level identification statisticc
has value typeop some xsd stringc

PeptideShaker PSM scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002466

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd floatc
has_orderop some higher score betterc

PeptideShaker PTM confidence typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002539

has super-classes
PTM localization confidence metricc
has value typeop some xsd stringc

peptidoformc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003049

has super-classes
peptidec
has sub-classes
peptidoform ionc

peptidoform attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003050

has super-classes
part_ofop some peptidoformc
has sub-classes
peptidoform group labelc, peptidoform labeling statec, peptidoform sequencec, retention timec, stripped peptide sequencec

peptidoform group labelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000893

has super-classes
peptidoform attributec
has value typeop some xsd stringc

peptidoform ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003051

has super-classes
peptidoformc

peptidoform ion propertyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003052

has super-classes
part_ofop some peptidoform ionc
has sub-classes
theoretical average m/zc, theoretical monoisotopic m/zc

peptidoform labeling statec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000890

has super-classes
peptidoform attributec
has sub-classes
heavy labeled peptidoformc, unlabeled peptidoformc

peptidoform sequencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000889

Make it more general as there are actually many other ways to display a modified peptide sequence.
has super-classes
peptidoform attributec
has value typeop some xsd stringc
has sub-classes
proforma peptidoform sequencec

pepXML formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001421

has super-classes
intermediate analysis formatc

percent collision energy ramp endc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002219

has super-classes
normalized collision energyc
has value typeop some xsd floatc
has_unitsop some u o 0000187c

percent collision energy ramp startc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002218

has super-classes
normalized collision energyc
has_unitsop some u o 0000187c
has value typeop some xsd floatc

percent of base peakc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000132

has super-classes
intensity unitc
has value typeop some xsd floatc

percent of base peak times 100c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000905

has super-classes
intensity unitc
has value typeop some xsd floatc

Percolatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001490

has super-classes
analysis softwarec

Percolator input parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002107

has super-classes
software specific input parameterc
has sub-classes
Percolator:Validation based onc, Percolator:featuresc

Percolator:featuresc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001760

has super-classes
Percolator input parameterc
has value typeop some xsd stringc

percolator:PEPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001493

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

percolator:Q valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001491

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

percolator:scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001492

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

Percolator:Validation based onc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002092

has super-classes
Percolator input parameterc
has value typeop some xsd stringc

PerSeptive PKS formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001245

has super-classes
mass spectrometer file formatc

pFindc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003011

has super-classes
analysis softwarec

Phenyxc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001209

has super-classes
analysis softwarec

Phenyx input parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002097

has super-classes
search engine specific input parameterc
has sub-classes
Phenyx:AC Scorec, Phenyx:Conflict Resolutionc, Phenyx:Default Parent Chargec, Phenyx:Instrument Typec, Phenyx:MaxPepPvaluec, Phenyx:MinPepLengthc, Phenyx:MinPepzscorec, Phenyx:Scoring Modelc, Phenyx:Trust Parent Chargec, Phenyx:Turboc, Phenyx:Turbo:Coveragec, Phenyx:Turbo:ErrorTolc, Phenyx:Turbo:Seriesc

Phenyx XML formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001463

has super-classes
mass spectrometer file formatc
intermediate analysis formatc

Phenyx:ACc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001388

has super-classes
search engine specific score for proteinsc
has value typeop some xsd stringc

Phenyx:AC Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001386

has super-classes
Phenyx input parameterc
has value typeop some xsd doublec

Phenyx:Autoc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001393

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd booleanc

Phenyx:Conflict Resolutionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001387

has super-classes
Phenyx input parameterc
has value typeop some xsd booleanc

Phenyx:Default Parent Chargec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001377

has super-classes
Phenyx input parameterc
has value typeop some xsd stringc

Phenyx:IDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001389

has super-classes
search engine specific score for proteinsc
has value typeop some xsd stringc

Phenyx:Instrument Typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001375

has super-classes
Phenyx input parameterc
has value typeop some xsd stringc

Phenyx:MaxPepPvaluec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001385

has super-classes
Phenyx input parameterc
has value typeop some xsd doublec

Phenyx:MinPepLengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001383

has super-classes
Phenyx input parameterc
has value typeop some xsd positive integerc

Phenyx:MinPepzscorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001384

has super-classes
Phenyx input parameterc
has value typeop some xsd doublec

Phenyx:Modifc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001398

has super-classes
PSM-level search engine specific statisticc
search engine specific score for proteinsc
has value typeop some xsd stringc

Phenyx:NumberOfMCc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001397

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd positive integerc

Phenyx:PepPvaluec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001396

has super-classes
PSM-level search engine specific statisticc
search engine specific peptide sequence-level identification statisticc
has value typeop some xsd doublec

Phenyx:Peptides1c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001391

has super-classes
search engine specific score for proteinsc
has value typeop some xsd positive integerc

Phenyx:Peptides2c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001392

has super-classes
search engine specific score for proteinsc
has value typeop some xsd positive integerc

Phenyx:Pepzscorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001395

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

Phenyx:Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001390

has super-classes
search engine specific score for proteinsc
has value typeop some xsd doublec

Phenyx:Scoring Modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001376

has super-classes
Phenyx input parameterc
has value typeop some xsd stringc

Phenyx:Trust Parent Chargec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001378

has super-classes
Phenyx input parameterc
has value typeop some xsd stringc

Phenyx:Turboc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001379

has super-classes
Phenyx input parameterc
has value typeop some xsd booleanc

Phenyx:Turbo:Coveragec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001381

has super-classes
Phenyx input parameterc
has value typeop some xsd doublec

Phenyx:Turbo:ErrorTolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001380

has super-classes
Phenyx input parameterc
has value typeop some xsd doublec

Phenyx:Turbo:Seriesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001382

has super-classes
Phenyx input parameterc
has value typeop some xsd stringc

Phenyx:Userc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001394

has super-classes
PSM-level search engine specific statisticc
search engine specific score for proteinsc
has value typeop some xsd booleanc

Philosopherc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003018

has super-classes
analysis softwarec

phosphoRS scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001969

has super-classes
PTM localization PSM-level statisticc
has value typeop some xsd stringc
has regexpop some regular expression for modification localization scoringc

phosphoRS score thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002567

has super-classes
PTM localization score thresholdc
has value typeop some xsd doublec

phosphoRS sequence probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001970

has super-classes
PTM localization PSM-level statisticc
has regexpop some regular expression for modification localization scoringc
has value typeop some xsd stringc

phosphoRS site probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001971

has super-classes
PTM localization PSM-level statisticc
has regexpop some regular expression for modification localization scoringc
has value typeop some xsd stringc

phosphoRS site probability thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002568

has super-classes
PTM localization score thresholdc
has value typeop some xsd doublec

photodiode array detectorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000621

has super-classes
array detectorc
has sub-classes
Acquity UPLC PDAc

photodissociationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000435

has super-classes
dissociation methodc

photoionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000273

has super-classes
ionization typec

photomultiplierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000116

has super-classes
detector typec

PIAc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002387

has super-classes
analysis softwarec
postprocessing softwarec

PIA workflow parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002389

has super-classes
search engine specific input parameterc
software specific input parameterc
has sub-classes
PIA:Combined FDRScore calculatedc, PIA:FDRScore calculatedc, PIA:PSM sets createdc, PIA:filterc, PIA:protein inferencec, PIA:protein inference filterc, PIA:protein inference scoringc, PIA:protein inference used PSMsc, PIA:protein inference used scorec, PIA:used top identifications for FDRc

PIA XML formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002388

has super-classes
intermediate analysis formatc

PIA:Combined FDRScore calculatedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002391

has super-classes
PIA workflow parameterc
has value typeop some xsd booleanc

PIA:FDRScore calculatedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002390

has super-classes
PIA workflow parameterc
has value typeop some xsd booleanc

PIA:filterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002400

has super-classes
PIA workflow parameterc
has value typeop some xsd stringc

PIA:protein inferencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002395

has super-classes
PIA workflow parameterc
has value typeop some xsd stringc

PIA:protein inference filterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002396

has super-classes
PIA workflow parameterc
has value typeop some xsd stringc

PIA:protein inference scoringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002397

has super-classes
PIA workflow parameterc
has value typeop some xsd stringc

PIA:protein inference used PSMsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002399

has super-classes
PIA workflow parameterc
has value typeop some xsd stringc

PIA:protein inference used scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002398

has super-classes
PIA workflow parameterc
has value typeop some xsd stringc

PIA:protein scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002394

has super-classes
search engine specific score for proteinsc
has_orderop some higher score betterc
has value typeop some xsd doublec

PIA:PSM sets createdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002392

has super-classes
PIA workflow parameterc
has value typeop some xsd booleanc

PIA:used top identifications for FDRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002393

has super-classes
PIA workflow parameterc
has value typeop some xsd positive integerc

PinPointc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001912

has super-classes
Thermo Finnigan softwarec
analysis softwarec
data processing softwarec

plasma desorptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000134

has super-classes
dissociation methodc

plasma desorption ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000400

has super-classes
ionization typec

Platform ICPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000184

has super-classes
Waters instrument modelc

pmf searchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001081

has super-classes
search typec

PNamec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001002

has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc

pNovoc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002983

has super-classes
analysis softwarec

point collectorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000350

has super-classes
detector typec

PolarisQc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000185

has super-classes
Thermo Finnigan instrument modelc

polarityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000037

This term was made obsolete because it was redundant with the Pato Ontology term polarity (UO:0002186).

polysaccharidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003042

has super-classes
moleculec

PolyToolsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000727

has super-classes
Bruker softwarec

positive ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000374

This child of the former purgatory term ion chemical type was made obsolete.

positive ion modec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000077

This term was made obsolete because it was replaced by positive scan (MS:1000130).

positive mode adduct ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002807

has super-classes
adduct ionc
has sub-classes
M+H ionc

positive scanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000130

has super-classes
scan polarityc
chromatogram attributec

possible charge statec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000633

has super-classes
ion selection attributec
has value typeop some xsd intc

post-source decayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000135

has super-classes
dissociation methodc

postacceleration detectorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000351

has super-classes
detector typec

postprocessing softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002414

has super-classes
data processing softwarec
has sub-classes
PIAc

pre-ionization statec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000401

This child of the former purgatory term ion reaction was made obsolete.

precoated MALDI sample platec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000839

has super-classes
matrix application typec
sample plate typec

precursor activationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000456

has super-classes
part_ofop some spectrumc

precursor activation attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000510

has super-classes
part_ofop some precursor activationc
has sub-classes
Collision cell exit potentialc, activation energyc, buffer gasc, charge strippingc, collision energyc, collision gasc, collision gas pressurec, normalized collision energyc, supplemental collision energyc

precursor apex intensityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003086

has super-classes
spectrum attributec
intensity of precursor ionc
has value typeop some xsd stringc

precursor ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000340

This child of the former purgatory term ion role was made obsolete.

precursor ion detection probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002223

has super-classes
SRM transition attributec
has value typeop some xsd floatc

precursor ion scanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000100

This former purgatory term was made obsolete.

precursor ion spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000341

has super-classes
mass spectrumc

precursor neutral lossc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001525

has super-classes
peptide modification detailsc
has value typeop some xsd doublec
has_unitsop some u o 0000221c

precursor recalculationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000780

has super-classes
data processing actionc
has sub-classes
msPrefix precursor recalculationc

precursor shift decoy spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003194

has super-classes
decoy spectrumc

predicted isoelectric pointc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000863

has super-classes
isoelectric pointc
has value typeop some xsd floatc

predicted retention timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000897

has super-classes
retention timec
has_unitsop some u o 0000031c
has value typeop some xsd floatc
has_unitsop some u o 0000010c

predicted spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003074

has super-classes
spectrum origin typec

Prefixc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000009

has super-classes
PEFF file header section termc
has value typeop some xsd stringc

preprocessing softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002386

has super-classes
data processing softwarec

preset scan configurationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000616

has super-classes
scan attributec
has value typeop some xsd stringc

pressure arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000821

has super-classes
binary data arrayc
has_unitsop some u o 0000110c

pressure chromatogramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003019

has super-classes
chromatogram typec

previous MSn-1 scan precursor intensityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003085

has super-classes
spectrum attributec
intensity of precursor ionc
has value typeop some xsd stringc

PRIDE Converter2c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002335

has super-classes
conversion softwarec

PRIDE experiment URIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001929

has super-classes
external reference identifierc
has value typeop some xsd any u r ic

PRIDE project URIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001930

has super-classes
external reference identifierc
has value typeop some xsd any u r ic

PRIDE XMLc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002600

has super-classes
spectrum identification result detailsc
identification file formatc

principal ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000373

This child of the former purgatory term ion chemical type was made obsolete.

printed MALDI matrix preparationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000837

has super-classes
matrix application typec

Pro BLASTc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000671

has super-classes
SCIEX softwarec
analysis softwarec
data processing softwarec

Pro ICATc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000669

has super-classes
SCIEX softwarec
analysis softwarec
data processing softwarec

Pro IDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000668

has super-classes
SCIEX softwarec
analysis softwarec
data processing softwarec

Pro Quantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000670

has super-classes
SCIEX softwarec
analysis softwarec
data processing softwarec

probability for proteinsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002367

has super-classes
single protein identification statisticc
has value typeop some xsd doublec
has_domainop some value between 0 and 1 inclusivec

Processedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001010

has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc
has regexpop some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional commentc

processed data filec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003084

has super-classes
source data filec
has value typeop some xsd stringc

ProConc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002334

has super-classes
conversion softwarec

product backgroundc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002413

has super-classes
quantification datatypec
has value typeop some xsd doublec

product interpretation rankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000926

has super-classes
product ion attributec
has value typeop some xsd positive integerc

product ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000342

This child of the former purgatory term ion role was made obsolete.

product ion attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001221

has super-classes
single identification result attributec
has sub-classes
co-eluting ionc, fragmentation ion typec, non-identified ionc, product interpretation rankc, product ion intensityc, product ion m/zc, product ion m/z deltac, product ion m/z errorc, product ion mobilityc, product ion series ordinalc

product ion detection probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002224

has super-classes
SRM transition attributec
has value typeop some xsd floatc

product ion drift timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001967

This term was made obsolete because it was replaced by ion mobility drift time (MS:1002476).
has super-classes
SRM transition attributec
has value typeop some xsd floatc
has_unitsop some u o 0000028c

product ion intensityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001226

has super-classes
product ion attributec
has_unitsop some percent of base peak times 100c
has_unitsop some percent of base peakc
has_unitsop some number of detector countsc
has_unitsop some counts per secondc
has sub-classes
average product ion intensityc, product ion intensity standard deviationc

product ion intensity standard deviationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002226

has super-classes
product ion intensityc
has_unitsop some counts per secondc
has_unitsop some percent of base peak times 100c
has_unitsop some number of detector countsc
has_unitsop some percent of base peakc

product ion m/zc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001225

has super-classes
product ion attributec
has_unitsop some m/zc

product ion m/z deltac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000904

has super-classes
product ion attributec
has_unitsop some m/zc

product ion m/z errorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001227

has super-classes
product ion attributec
has_unitsop some m/zc
has_unitsop some u o 0000166c

product ion mobilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001966

has super-classes
product ion attributec

product ion scanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000101

This former purgatory term was made obsolete.

product ion series ordinalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000903

has super-classes
product ion attributec
has value typeop some xsd positive integerc

product ion spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000343

This term was made obsolete because it was merged with MSn spectrum (MS:1000580).
has super-classes
mass spectrumc

profile spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000128

has super-classes
spectrum representationc

ProfileAnalysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000728

has super-classes
Bruker softwarec
analysis softwarec
data processing softwarec

proforma peptidoform sequencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003169

has super-classes
peptidoform sequencec
has value typeop some xsd stringc

Profound:Clusterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001499

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

Profound:ClusterRankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001500

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd positive integerc

Profound:z valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001498

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

Progenesis automatic alignmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001865

has super-classes
quantification data processingc

Progenesis LC-MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001830

has super-classes
quantitation software namec

Progenesis manual alignmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001866

has super-classes
quantification data processingc

Progenesis MetaScope scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002889

has super-classes
small molecule confidence measurec
has value typeop some xsd floatc

Progenesis normalizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001867

has super-classes
quantification data processingc

Progenesis QIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002879

has super-classes
small molecule analysis softwarec

Progenesis QI normalised abundancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002887

has super-classes
small molecule quantification datatypec
has value typeop some xsd doublec

Progenesis:confidence scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001894

has super-classes
quantification datatypec
has value typeop some xsd doublec

Progenesis:feature intensityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001896

has super-classes
feature-level quantification datatypec
has value typeop some xsd doublec

Progenesis:peptide countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001895

has super-classes
peptide-level quantification datatypec
has value typeop some xsd intc

Progenesis:peptide normalised abundancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001891

has super-classes
peptide-level quantification datatypec
has value typeop some xsd doublec

Progenesis:peptide raw abundancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001893

has super-classes
peptide-level quantification datatypec
has value typeop some xsd doublec

Progenesis:protein group normalised abundancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002518

has super-classes
protein group-level quantification datatypec
has value typeop some xsd doublec

Progenesis:protein group raw abundancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002519

has super-classes
protein group-level quantification datatypec
has value typeop some xsd doublec

Progenesis:protein normalised abundancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001890

has super-classes
protein-level quantification datatypec
has value typeop some xsd doublec

Progenesis:protein raw abundancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001892

has super-classes
protein-level quantification datatypec
has value typeop some xsd doublec

progeny ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000344

This child of the former purgatory term ion chemical type was made obsolete.

programmerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001268

has super-classes
role typec
has value typeop some xsd stringc

prolate traochoidal mass spectrometerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000298

This child of the former purgatory term mass spectrometer was made obsolete.

Prolinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002981

has super-classes
analysis softwarec

proline endopeptidasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001916

has super-classes
cleavage agent namec
has regexpop some (?<=[HKR]P)(?c

ProLuCIDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002596

has super-classes
analysis softwarec

ProLuCID:deltacnc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002535

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

ProLuCID:xcorrc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002534

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec
has_orderop some higher score betterc

propeptidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001034

has super-classes
PEFF molecule processing keywordc
has value typeop some xsd stringc
has regexpop some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional commentc

proportionalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000089

This child of the former purgatory term resolution type was made obsolete.

ProSightc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003141

has super-classes
analysis softwarec

ProSight input parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003136

has super-classes
search engine specific input parameterc
has sub-classes
ProSight:Run Annotated Proteoform Search modec, ProSight:Run Subsequence Search modec, ProSight:Run delta m modec

ProSight:isoform Q-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003134

has super-classes
isoform-level Q-valuec
has_orderop some lower score betterc
has value typeop some xsd doublec

ProSight:protein Q-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003135

has super-classes
protein-level q-valuec
has_orderop some lower score betterc
has value typeop some xsd doublec

ProSight:proteoform Q-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003130

has super-classes
proteoform-level Q-valuec
has_orderop some lower score betterc
has value typeop some xsd doublec

ProSight:Run Annotated Proteoform Search modec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003140

has super-classes
ProSight input parameterc
TDPortal input parameterc
has value typeop some xsd booleanc

ProSight:Run delta m modec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003138

has super-classes
ProSight input parameterc
TDPortal input parameterc
has value typeop some xsd booleanc

ProSight:Run Subsequence Search modec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003139

has super-classes
ProSight input parameterc
TDPortal input parameterc
has value typeop some xsd booleanc

ProSight:spectral C-scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003128

has super-classes
PSM-level search engine specific statisticc
has_orderop some higher score betterc
has value typeop some xsd doublec

ProSight:spectral E-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003127

has super-classes
PSM-level search engine specific statisticc
PSM-level e-valuec
has_orderop some lower score betterc
has value typeop some xsd doublec

ProSight:spectral P-scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003126

has super-classes
PSM-level search engine specific statisticc
has_orderop some lower score betterc
has value typeop some xsd doublec

ProSight:spectral Q-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003125

has super-classes
PSM-level search engine specific statisticc
PSM-level q-valuec
has_orderop some lower score betterc
has value typeop some xsd doublec

prot:FDR thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001447

has super-classes
protein-level statistical thresholdc
has value typeop some xsd doublec

proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000882

has super-classes
moleculec

protein accessionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000885

has super-classes
protein attributec
peptide-to-protein mapping attributec
has value typeop some xsd stringc

protein ambiguity group result detailsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001147

has super-classes
protein-level identification attributec
search engine specific scorec

protein attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000884

has super-classes
quantification object attributec
part_ofop some proteinc
has sub-classes
gene namec, protein accessionc, protein modificationsc, protein namec, protein short namec

protein cluster identification attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002698

has super-classes
single identification result attributec
has sub-classes
cluster identifierc

protein descriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001088

has super-classes
protein-level identification attributec
database sequence detailsc
has value typeop some xsd stringc

protein detection statistical thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002572

has super-classes
statistical thresholdc
has sub-classes
protein group-level statistical thresholdc, protein-level statistical thresholdc

protein group attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002113

has super-classes
quantification object attributec

protein group list attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002112

has super-classes
quantification object attributec

protein group or subset relationshipc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001101

has super-classes
protein-level identification attributec
has sub-classes
anchor proteinc, family member proteinc, group member with undefined relationship OR ortholog proteinc, group representativec, leading proteinc, marginally distinguished proteinc, non-leading proteinc, protein inference confidence categoryc, sequence multiply subsumable proteinc, sequence same-set proteinc, sequence sub-set proteinc, sequence subsumable proteinc, spectrum multiply subsumable proteinc, spectrum same-set proteinc, spectrum sub-set proteinc, spectrum subsumable proteinc

protein group passes thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002415

has super-classes
protein group-level identification attributec
has value typeop some xsd booleanc

protein group-level combined FDRScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002375

has super-classes
search engine specific score for protein groupsc
has value typeop some xsd doublec
has_domainop some value greater than zero but less than or equal to onec

protein group-level confidencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002461

has super-classes
protein group-level identification statisticc

protein group-level e-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002372

has super-classes
protein group-level identification statisticc
has_domainop some value greater than zeroc
has value typeop some xsd doublec

protein group-level FDRScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002374

has super-classes
search engine specific score for protein groupsc
has value typeop some xsd doublec
has_domainop some value greater than zero but less than or equal to onec

protein group-level global FDRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002369

has super-classes
protein group-level result list statisticc
has value typeop some xsd doublec

protein group-level global FNRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002460

has super-classes
protein group-level result list statisticc
has_domainop some value between 0 and 1 inclusivec

protein group-level identification attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002346

has super-classes
single identification result attributec
has sub-classes
protein group passes thresholdc, protein group-level identification statisticc

protein group-level identification statisticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002348

has super-classes
protein group-level identification attributec
has sub-classes
protein group-level confidencec, protein group-level e-valuec, protein group-level local FDRc, protein group-level p-valuec, protein group-level probabilityc, protein group-level q-valuec, search engine specific score for protein groupsc

protein group-level local FDRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002370

has super-classes
protein group-level identification statisticc
has value typeop some xsd doublec

protein group-level p-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002371

has super-classes
protein group-level identification statisticc
has value typeop some xsd doublec
has_domainop some value between 0 and 1 inclusivec

protein group-level probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002376

has super-classes
protein group-level identification statisticc
has_domainop some value between 0 and 1 inclusivec
has value typeop some xsd doublec

protein group-level q-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002373

has super-classes
protein group-level identification statisticc
has value typeop some xsd doublec
has_domainop some value between 0 and 1 inclusivec

protein group-level quantification datatypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002739

has super-classes
quantification datatypec
has sub-classes
Progenesis:protein group normalised abundancec, Progenesis:protein group raw abundancec

protein group-level result list attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002405

has super-classes
result list attributec
has sub-classes
count of identified clustersc, number of distinct protein sequencesc, protein group-level result list statisticc

protein group-level result list statisticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002706

has super-classes
protein group-level result list attributec
has sub-classes
protein group-level global FDRc, protein group-level global FNRc

protein group-level statistical thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002486

has super-classes
protein detection statistical thresholdc

protein identification confidence metricc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001198

has super-classes
single protein identification statisticc
has sub-classes
p-valuec

protein inference confidence categoryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001600

has super-classes
protein group or subset relationshipc
has value typeop some xsd stringc
has sub-classes
PAnalyzer:ambiguous group memberc, PAnalyzer:conclusive proteinc, PAnalyzer:indistinguishable proteinc, PAnalyzer:non-conclusive proteinc

protein level PSM countsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002153

has super-classes
protein-level quantification datatypec
has value typeop some xsd intc

protein list attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002114

has super-classes
quantification object attributec

protein modificationsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000933

has super-classes
protein attributec
has value typeop some xsd stringc

protein namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000886

has super-classes
protein attributec
has value typeop some xsd stringc

protein rankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001301

has super-classes
protein-level identification attributec
has value typeop some xsd intc

protein ratioc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001134

has super-classes
protein-level quantification datatypec
has value typeop some xsd doublec

protein sequence offsetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003047

has super-classes
peptide-to-protein mapping attributec

protein short namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000883

has super-classes
protein attributec
has value typeop some xsd stringc

protein value: mean of peptide ratiosc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001860

has super-classes
protein-level quantification datatypec
has value typeop some xsd doublec

protein value: median of peptide ratiosc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002067

has super-classes
protein-level quantification datatypec
has value typeop some xsd doublec

protein value: sum of peptide valuesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001851

has super-classes
protein-level quantification datatypec
has value typeop some xsd doublec

protein-level e-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001873

has super-classes
single protein identification statisticc
has value typeop some xsd doublec
has_domainop some value greater than zeroc

protein-level global FDRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001214

has super-classes
protein-level result list statisticc
has value typeop some xsd doublec
has_domainop some value between 0 and 1 inclusivec

protein-level identification attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001085

has super-classes
single identification result attributec
has sub-classes
confident distinct peptide sequencesc, confident peptide qualificationc, confident peptide sequence numberc, distinct peptide sequencesc, molecule taxonomyc, protein ambiguity group result detailsc, protein descriptionc, protein group or subset relationshipc, protein rankc, sequence coveragec, single protein identification statisticc

protein-level local FDRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002364

has super-classes
single protein identification statisticc
has value typeop some xsd doublec

protein-level p-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001871

has super-classes
single protein identification statisticc
has_domainop some value between 0 and 1 inclusivec
has value typeop some xsd doublec

protein-level q-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001869

has super-classes
single protein identification statisticc
has_domainop some value between 0 and 1 inclusivec
has value typeop some xsd doublec
has sub-classes
ProSight:protein Q-valuec

protein-level quantification datatypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002738

has super-classes
quantification datatypec
has sub-classes
APEX valuec, Progenesis:protein normalised abundancec, Progenesis:protein raw abundancec, emPAI valuec, error on protein ratioc, normalized protein valuec, p-value (protein diff from 1 randomly)c, protein level PSM countsc, protein ratioc, protein value: mean of peptide ratiosc, protein value: median of peptide ratiosc, protein value: sum of peptide valuesc

protein-level result list attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002704

has super-classes
result list attributec
has sub-classes
count of identified proteinsc, protein-level result list statisticc

protein-level result list statisticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002705

has super-classes
protein-level result list attributec
has sub-classes
protein-level global FDRc

protein-level statistical thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002485

has super-classes
protein detection statistical thresholdc
has sub-classes
prot:FDR thresholdc

protein-pair-level global FDRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002676

has super-classes
interaction score derived from cross-linkingc
has value typeop some xsd doublec
has_domainop some value between 0 and 1 inclusivec
has regexpop some regular expression for interaction scores derived from cross-linkingc

PROTEINEERc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000729

has super-classes
Bruker softwarec

PROTEINEER dpc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000730

has super-classes
Bruker softwarec

PROTEINEER fcc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000731

has super-classes
Bruker softwarec

PROTEINEER spIIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000732

has super-classes
Bruker softwarec

PROTEINEER-LCc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000733

has super-classes
Bruker softwarec

ProteinExtractorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001487

has super-classes
Bruker softwarec
analysis softwarec

ProteinExtractor input parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002098

has super-classes
search engine specific input parameterc
has sub-classes
ProteinExtractor:GenerateNonRedundantc, ProteinExtractor:IncludeIdentifiedc, ProteinExtractor:MascotPeptideScoreThresholdc, ProteinExtractor:MascotUniqueScorec, ProteinExtractor:MascotUseIdentityScorec, ProteinExtractor:MascotWeightingc, ProteinExtractor:MaxNumberOfProteinsc, ProteinExtractor:MaxProteinMassc, ProteinExtractor:Methodnamec, ProteinExtractor:MinNumberOfPeptidesc, ProteinExtractor:PhenyxPeptideScoreThresholdc, ProteinExtractor:PhenyxUniqueScorec, ProteinExtractor:PhenyxWeightingc, ProteinExtractor:ProteinSolverPeptideScoreThresholdc, ProteinExtractor:ProteinSolverUniqueScorec, ProteinExtractor:ProteinSolverWeightingc, ProteinExtractor:SequestPeptideScoreThresholdc, ProteinExtractor:SequestUniqueScorec, ProteinExtractor:SequestWeightingc, ProteinExtractor:UseMascotc, ProteinExtractor:UsePhenyxc, ProteinExtractor:UseProteinSolverc, ProteinExtractor:UseSequestc, ProteinExtractor:Weightingc

ProteinExtractor:GenerateNonRedundantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001425

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd booleanc

ProteinExtractor:IncludeIdentifiedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001426

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd booleanc

ProteinExtractor:MascotPeptideScoreThresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001431

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd doublec

ProteinExtractor:MascotUniqueScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001432

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd doublec

ProteinExtractor:MascotUseIdentityScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001433

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd booleanc

ProteinExtractor:MascotWeightingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001434

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd doublec

ProteinExtractor:MaxNumberOfProteinsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001427

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd positive integerc

ProteinExtractor:MaxProteinMassc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001428

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd doublec

ProteinExtractor:Methodnamec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001424

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd stringc

ProteinExtractor:MinNumberOfPeptidesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001429

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd positive integerc

ProteinExtractor:PhenyxPeptideScoreThresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001444

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd doublec

ProteinExtractor:PhenyxUniqueScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001445

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd doublec

ProteinExtractor:PhenyxWeightingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001446

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd doublec

ProteinExtractor:ProteinSolverPeptideScoreThresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001440

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd doublec

ProteinExtractor:ProteinSolverUniqueScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001441

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd doublec

ProteinExtractor:ProteinSolverWeightingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001442

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd doublec

ProteinExtractor:Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001507

has super-classes
search engine specific score for proteinsc
has value typeop some xsd doublec

ProteinExtractor:SequestPeptideScoreThresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001436

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd doublec

ProteinExtractor:SequestUniqueScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001437

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd doublec

ProteinExtractor:SequestWeightingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001438

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd doublec

ProteinExtractor:UseMascotc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001430

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd booleanc

ProteinExtractor:UsePhenyxc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001443

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd booleanc

ProteinExtractor:UseProteinSolverc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001439

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd booleanc

ProteinExtractor:UseSequestc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001435

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd booleanc

ProteinExtractor:Weightingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001963

has super-classes
ProteinExtractor input parameterc
has value typeop some xsd floatc

ProteinLynx Global Serverc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000601

has super-classes
Waters softwarec
analysis softwarec
data processing softwarec

ProteinLynx Global Server mass spectrum XML formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000614

has super-classes
mass spectrometer file formatc

ProteinLynx XML formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001566

has super-classes
intermediate analysis formatc

ProteinLynx:Ladder Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001571

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

ProteinLynx:Log Likelihoodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001570

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

ProteinPilot Softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000663

has super-classes
SCIEX softwarec
analysis softwarec
data processing softwarec

ProteinProphetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002289

has super-classes
Trans-Proteomic Pipeline softwarec

ProteinProphet:peptide group weightc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003017

has super-classes
search engine specific scorec
peptide-level scoringc
has_orderop some higher score betterc
has_domainop some value between 0 and 1 inclusivec
has value typeop some xsd floatc

ProteinProphet:peptide weightc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003016

has super-classes
search engine specific scorec
peptide-level scoringc
has_domainop some value between 0 and 1 inclusivec
has_orderop some higher score betterc
has value typeop some xsd floatc

ProteinProspectorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002043

has super-classes
analysis softwarec

ProteinProspector:expectation valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002045

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

ProteinProspector:scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002044

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

ProteinScapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000734

has super-classes
Bruker softwarec
analysis softwarec

ProteinScape Gelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001276

has super-classes
intermediate analysis formatc

ProteinScape input parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002100

has super-classes
search engine specific input parameterc
has sub-classes
ProteinScape:second round Mascotc, ProteinScape:second round Phenyxc

ProteinScape SearchEventc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001275

has super-classes
intermediate analysis formatc

Proteinscape spectrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001527

has super-classes
mass spectrometer file formatc

ProteinScape:IntensityCoveragec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001505

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

ProteinScape:PFFSolverExpc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001503

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

ProteinScape:PFFSolverScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001504

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

ProteinScape:ProfoundProbabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001497

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

ProteinScape:SearchEventIdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001496

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd positive integerc

ProteinScape:SearchResultIdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001495

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd positive integerc

ProteinScape:second round Mascotc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001964

has super-classes
ProteinScape input parameterc
has value typeop some xsd booleanc

ProteinScape:second round Phenyxc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001965

has super-classes
ProteinScape input parameterc
has value typeop some xsd booleanc

ProteinScape:SequestMetaScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001506

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

Proteiosc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000600

has super-classes
analysis softwarec
data processing softwarec

ProteoAnnotator:count alternative peptidesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002475

has super-classes
search engine specific score for protein groupsc
has value typeop some xsd intc

ProteoAnnotator:non-canonical gene model scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002474

has super-classes
search engine specific score for protein groupsc
has value typeop some xsd doublec
has_orderop some higher score betterc

Proteoformc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001030

has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc

proteoform-level global FDRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002907

has super-classes
proteoform-level identification statisticc
has value typeop some xsd doublec
has_domainop some value between 0 and 1 inclusivec

proteoform-level global FDR thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002910

has super-classes
proteoform-level statistical thresholdc
has value typeop some xsd doublec

proteoform-level identification attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002904

has super-classes
single identification result attributec
has sub-classes
proteoform-level identification statisticc

proteoform-level identification statisticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002905

has super-classes
proteoform-level identification attributec
has sub-classes
proteoform-level Q-valuec, proteoform-level global FDRc, proteoform-level local FDRc, search engine specific score for proteoformsc

proteoform-level local FDRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002908

has super-classes
proteoform-level identification statisticc
has value typeop some xsd doublec
has_domainop some value between 0 and 1 inclusivec
has sub-classes
TopMG:proteoform-level FDRc, TopPIC:proteoform-level FDRc

proteoform-level local FDR thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002911

has super-classes
proteoform-level statistical thresholdc
has value typeop some xsd doublec

proteoform-level Q-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003129

has super-classes
proteoform-level identification statisticc
has_domainop some value between 0 and 1 inclusivec
has_orderop some lower score betterc
has value typeop some xsd doublec
has sub-classes
ProSight:proteoform Q-valuec

proteoform-level statistical thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002909

has super-classes
spectrum identification statistical thresholdc
has sub-classes
proteoform-level global FDR thresholdc, proteoform-level local FDR thresholdc

ProteoformDbc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000022

has super-classes
PEFF file header section termc
has value typeop some xsd stringc

proteogenomics attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002636

has super-classes
peptide sequence-level identification attributec
has sub-classes
chromosome namec, chromosome strandc, genome reference versionc, peptide end on chromosomec, peptide exon countc, peptide exon nucleotide sizesc, peptide start on chromosomec, peptide start positions on chromosomec, unmapped peptidec, unmapped proteinc

proteogenomics searchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002635

has super-classes
special processingc

ProteoGrouper:PAG scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002236

has super-classes
search engine specific score for protein groupsc
has value typeop some xsd doublec

ProteoGrouper:PDH scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002235

has super-classes
search engine specific score for proteinsc
has value typeop some xsd doublec

Proteome Discovererc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000650

has super-classes
Thermo Finnigan softwarec
analysis softwarec
data processing softwarec

ProteomeCentral dataset URIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002847

has super-classes
Experiment additional parameterc
has value typeop some xsd stringc

ProteomeDiscoverer input parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002101

has super-classes
search engine specific input parameterc
has sub-classes
ProteomeDiscoverer:1. Dynamic Modificationc, ProteomeDiscoverer:1. Static Modificationc, ProteomeDiscoverer:1. Static Terminal Modificationc, ProteomeDiscoverer:2. Dynamic Modificationc, ProteomeDiscoverer:2. Static Modificationc, ProteomeDiscoverer:3. Dynamic Modificationc, ProteomeDiscoverer:3. Static Modificationc, ProteomeDiscoverer:4. Dynamic Modificationc, ProteomeDiscoverer:5. Dynamic Modificationc, ProteomeDiscoverer:Absolute XCorr Thresholdc, ProteomeDiscoverer:Activation Typec, ProteomeDiscoverer:Amanda:high confidence thresholdc, ProteomeDiscoverer:Amanda:middle confidence thresholdc, ProteomeDiscoverer:Default FDR calculatorc, ProteomeDiscoverer:Dynamic Modificationc, ProteomeDiscoverer:Enzyme Namec, ProteomeDiscoverer:Fragment Mass Tolerancec, ProteomeDiscoverer:Highest Charge Statec, ProteomeDiscoverer:Initial minimal peptide probabilityc, ProteomeDiscoverer:Lowest Charge Statec, ProteomeDiscoverer:MS Orderc, ProteomeDiscoverer:Mascot:Decoy Searchc, ProteomeDiscoverer:Mascot:Error tolerant Searchc, ProteomeDiscoverer:Mascot:Mascot Server URLc, ProteomeDiscoverer:Mascot:Max MGF File Sizec, ProteomeDiscoverer:Mascot:Number of attempts to submit the searchc, ProteomeDiscoverer:Mascot:Peptide CutOff Scorec, ProteomeDiscoverer:Mascot:Please Do not Touch thisc, ProteomeDiscoverer:Mascot:Protein CutOff Scorec, ProteomeDiscoverer:Mascot:Protein Relevance Factorc, ProteomeDiscoverer:Mascot:Significance Highc, ProteomeDiscoverer:Mascot:Significance Middlec, ProteomeDiscoverer:Mascot:Taxonomyc, ProteomeDiscoverer:Mascot:Time interval between attempts to submit a searchc, ProteomeDiscoverer:Mascot:User Namec, ProteomeDiscoverer:Mascot:Weight of A Ionsc, ProteomeDiscoverer:Mascot:Weight of B Ionsc, ProteomeDiscoverer:Mascot:Weight of C Ionsc, ProteomeDiscoverer:Mascot:Weight of D Ionsc, ProteomeDiscoverer:Mascot:Weight of V Ionsc, ProteomeDiscoverer:Mascot:Weight of W Ionsc, ProteomeDiscoverer:Mascot:Weight of X Ionsc, ProteomeDiscoverer:Mascot:Weight of Y Ionsc, ProteomeDiscoverer:Mascot:Weight of Z Ionsc, ProteomeDiscoverer:Mascot:X Static Modificationc, ProteomeDiscoverer:Mass Analyzerc, ProteomeDiscoverer:Max Modifications Per Peptidec, ProteomeDiscoverer:Max Precursor Massc, ProteomeDiscoverer:Maximum Delta Cnc, ProteomeDiscoverer:Maximum Missed Cleavage Sitesc, ProteomeDiscoverer:Maximum Peptides Outputc, ProteomeDiscoverer:Maximum Protein References Per Peptidec, ProteomeDiscoverer:Min Precursor Massc, ProteomeDiscoverer:Minimal peptide probabilityc, ProteomeDiscoverer:Minimal peptide weightc, ProteomeDiscoverer:Non-Fragment Filter:Mass Window Offsetc, ProteomeDiscoverer:Non-Fragment Filter:Maximum Neutral Loss Massc, ProteomeDiscoverer:Non-Fragment Filter:Remove Charge Reduced Precursorc, ProteomeDiscoverer:Non-Fragment Filter:Remove Neutral Loss Peaksc, ProteomeDiscoverer:Non-Fragment Filter:Remove Only Known Massesc, ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Overtonesc, ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Peakc, ProteomeDiscoverer:Number of Spectra Processed At Oncec, ProteomeDiscoverer:Number of input1 spectrac, ProteomeDiscoverer:Number of input2 spectrac, ProteomeDiscoverer:Number of input3 spectrac, ProteomeDiscoverer:Number of input4 spectrac, ProteomeDiscoverer:Number of input5 spectrac, ProteomeDiscoverer:Number of predicted correct proteinsc, ProteomeDiscoverer:Organismc, ProteomeDiscoverer:Peptide CTerminusc, ProteomeDiscoverer:Peptide NTerminusc, ProteomeDiscoverer:Peptide Without Protein Cut Off Scorec, ProteomeDiscoverer:Peptide Without Protein XCorr Thresholdc, ProteomeDiscoverer:Polarity Modec, ProteomeDiscoverer:Precursor Mass Tolerancec, ProteomeDiscoverer:Protein Databasec, ProteomeDiscoverer:Protein Relevance Thresholdc, ProteomeDiscoverer:Reference Databasec, ProteomeDiscoverer:Relaxed Score Thresholdc, ProteomeDiscoverer:Reporter Ions Quantizer:Integration Methodc, ProteomeDiscoverer:Reporter Ions Quantizer:Integration Window Tolerancec, ProteomeDiscoverer:Reporter Ions Quantizer:Quantitation Methodc, ProteomeDiscoverer:Residue substitution listc, ProteomeDiscoverer:SEQUEST:CTerminal Modificationc, ProteomeDiscoverer:SEQUEST:Calculate Probability Scorec, ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge1c, ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge2c, ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge3c, ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge4c, ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge1c, ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge2c, ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge3c, ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge4c, ProteomeDiscoverer:SEQUEST:Fragment Ion Cutoff Percentagec, ProteomeDiscoverer:SEQUEST:Low resolution spectra containedc, ProteomeDiscoverer:SEQUEST:Max Identical Modifications Per Peptidec, ProteomeDiscoverer:SEQUEST:Maximum Peptides Consideredc, ProteomeDiscoverer:SEQUEST:NTerminal Modificationc, ProteomeDiscoverer:SEQUEST:Peptide Relevance Factorc, ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge1c, ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge2c, ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge3c, ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge4c, ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge1c, ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge2c, ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge3c, ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge4c, ProteomeDiscoverer:SEQUEST:Use Average Fragment Massesc, ProteomeDiscoverer:SEQUEST:Weight of a Ionsc, ProteomeDiscoverer:SEQUEST:Weight of b Ionsc, ProteomeDiscoverer:SEQUEST:Weight of c Ionsc, ProteomeDiscoverer:SEQUEST:Weight of d Ionsc, ProteomeDiscoverer:SEQUEST:Weight of v Ionsc, ProteomeDiscoverer:SEQUEST:Weight of w Ionsc, ProteomeDiscoverer:SEQUEST:Weight of x Ionsc, ProteomeDiscoverer:SEQUEST:Weight of y Ionsc, ProteomeDiscoverer:SEQUEST:Weight of z Ionsc, ProteomeDiscoverer:SN Thresholdc, ProteomeDiscoverer:SRF File Selector:SRF File Pathc, ProteomeDiscoverer:Scan Typec, ProteomeDiscoverer:Search Against Decoy Databasec, ProteomeDiscoverer:Search Modifications Only For Identified Proteinsc, ProteomeDiscoverer:Source Filesc, ProteomeDiscoverer:Source Files oldc, ProteomeDiscoverer:Source file extensionc, ProteomeDiscoverer:Spectrum Exporter:Export Formatc, ProteomeDiscoverer:Spectrum Exporter:File namec, ProteomeDiscoverer:Spectrum Files:Raw File namesc, ProteomeDiscoverer:Spectrum Grouper:Allow MS Order Mismatchc, ProteomeDiscoverer:Spectrum Grouper:Allow Mass Analyzer Mismatchc, ProteomeDiscoverer:Spectrum Grouper:Max RT Differencec, ProteomeDiscoverer:Spectrum Grouper:Precursor Mass Criterionc, ProteomeDiscoverer:Spectrum Score Filter:Let Pass Above Scoresc, ProteomeDiscoverer:Spectrum Selector:Ionization Sourcec, ProteomeDiscoverer:Spectrum Selector:Lower RT Limitc, ProteomeDiscoverer:Spectrum Selector:Minimum Peak Countc, ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range Afterc, ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range Beforec, ProteomeDiscoverer:Spectrum Selector:Precursor Selectionc, ProteomeDiscoverer:Spectrum Selector:SN Threshold FTonlyc, ProteomeDiscoverer:Spectrum Selector:Total Intensity Thresholdc, ProteomeDiscoverer:Spectrum Selector:Unrecognized Activation Type Replacementsc, ProteomeDiscoverer:Spectrum Selector:Unrecognized Charge Replacementsc, ProteomeDiscoverer:Spectrum Selector:Unrecognized MS Order Replacementsc, ProteomeDiscoverer:Spectrum Selector:Unrecognized Mass Analyzer Replacementsc, ProteomeDiscoverer:Spectrum Selector:Unrecognized Polarity Replacementsc, ProteomeDiscoverer:Spectrum Selector:Upper RT Limitc, ProteomeDiscoverer:Spectrum Selector:Use New Precursor Reevaluationc, ProteomeDiscoverer:Static Modificationc, ProteomeDiscoverer:Static Modification for Xc, ProteomeDiscoverer:Strict Score Thresholdc, ProteomeDiscoverer:Target FDR Relaxedc, ProteomeDiscoverer:Target FDR Strictc, ProteomeDiscoverer:Use Average Precursor Massc, ProteomeDiscoverer:Use Neutral Loss a Ionsc, ProteomeDiscoverer:Use Neutral Loss b Ionsc, ProteomeDiscoverer:Use Neutral Loss y Ionsc, ProteomeDiscoverer:Use Neutral Loss z Ionsc, ProteomeDiscoverer:WinCyg reference databasec, ProteomeDiscoverer:WinCyg source filesc, ProteomeDiscoverer:Xtract:Highest Chargec, ProteomeDiscoverer:Xtract:Highest MZc, ProteomeDiscoverer:Xtract:Lowest Chargec, ProteomeDiscoverer:Xtract:Lowest MZc, ProteomeDiscoverer:Xtract:Monoisotopic Mass Onlyc, ProteomeDiscoverer:Xtract:Overlapping Remainderc, ProteomeDiscoverer:Xtract:Required Fitting Accuracyc, ProteomeDiscoverer:Xtract:Resolution At 400c, ProteomeDiscoverer:ZCore:Protein Score Cutoffc, ProteomeDiscoverer:automatic workloadc, ProteomeDiscoverer:ion settingsc, ProteomeDiscoverer:max differential modificationsc, ProteomeDiscoverer:max equal modificationsc, ProteomeDiscoverer:max number neutral lossc, ProteomeDiscoverer:max number neutral loss modificationsc, ProteomeDiscoverer:max number of same modifsc, ProteomeDiscoverer:max peptide lengthc, ProteomeDiscoverer:min peptide lengthc, ProteomeDiscoverer:perform deisotopingc, ProteomeDiscoverer:use flanking ionsc

ProteomeDiscoverer:1. Dynamic Modificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001720

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:1. Static Modificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002078

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Static Modification (MS:1001645) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:1. Static Terminal Modificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002522

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:2. Dynamic Modificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001721

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:2. Static Modificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002079

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Static Modification (MS:1001645) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:3. Dynamic Modificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001722

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:3. Static Modificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002330

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Static Modification (MS:1001645) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:4. Dynamic Modificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001723

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:5. Dynamic Modificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002331

This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Absolute XCorr Thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001668

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Activation Typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001604

This term was made obsolete because it's recommended to use one of the 'ionization type' terms (MS:1000008) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Amanda:high confidence thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002316

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:Amanda:middle confidence thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002317

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:automatic workloadc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002318

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Default FDR calculatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002232

has super-classes
ProteomeDiscoverer input parameterc
has regexpop some regular expressions for a GUIDc

ProteomeDiscoverer:Delta Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002834

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd floatc

ProteomeDiscoverer:Dynamic Modificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001644

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Enzyme Namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001654

This term was made obsolete because it's recommended to use cleavage agent name (MS:1001045) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Fragment Mass Tolerancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001655

This term was made obsolete because it's recommended to use search tolerance minus value (MS:1001413) or search tolerance plus value (MS:1001412) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Highest Charge Statec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001642

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:Initial minimal peptide probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001725

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:ion settingsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002329

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Lowest Charge Statec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001641

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:Mascot:Decoy Searchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001646

This term was made obsolete because it's recommended to use quality estimation with decoy database (MS:1001194) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Mascot:Error tolerant Searchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001647

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Mascot:Mascot Server URLc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001649

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Mascot:Max MGF File Sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001648

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:Mascot:Number of attempts to submit the searchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001650

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:Mascot:Peptide CutOff Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001658

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Mascot:Please Do not Touch thisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001754

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Mascot:Protein CutOff Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001660

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Mascot:Protein Relevance Factorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001662

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Mascot:Significance Highc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002230

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Mascot:Significance Middlec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002229

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Mascot:Taxonomyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001665

This term was made obsolete because it's recommended to use taxonomy: scientific name (MS:1001469) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Mascot:Time interval between attempts to submit a searchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001653

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Mascot:User Namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001652

This term was made obsolete because it's recommended to use researcher (MS:1001271) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Mascot:Weight of A Ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001743

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Mascot:Weight of B Ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001744

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Mascot:Weight of C Ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001745

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Mascot:Weight of D Ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001746

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Mascot:Weight of V Ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001747

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Mascot:Weight of W Ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001748

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Mascot:Weight of X Ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001749

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Mascot:Weight of Y Ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001750

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Mascot:Weight of Z Ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001751

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Mascot:X Static Modificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001651

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Mass Analyzerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001606

This term was made obsolete because it's recommended to use mass analyzer type (MS:1000443) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:max differential modificationsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002320

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:max equal modificationsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002321

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:Max Modifications Per Peptidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001673

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:max number neutral lossc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002324

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:max number neutral loss modificationsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002325

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:max number of same modifsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002327

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:max peptide lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002323

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:Max Precursor Massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001607

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Maximum Delta Cnc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002091

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Maximum Missed Cleavage Sitesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001657

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:Maximum Peptides Outputc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001675

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:Maximum Protein References Per Peptidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001676

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:min peptide lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002322

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:Min Precursor Massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001608

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Minimal peptide probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001726

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Minimal peptide weightc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001727

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:MS Orderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001610

This term was made obsolete because it's recommended to use MS1 spectrum (MS:1000579) or MSn spectrum (MS:1000580) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Non-Fragment Filter:Mass Window Offsetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001622

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Non-Fragment Filter:Maximum Neutral Loss Massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001623

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Non-Fragment Filter:Remove Charge Reduced Precursorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001624

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Non-Fragment Filter:Remove Neutral Loss Peaksc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001625

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Non-Fragment Filter:Remove Only Known Massesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001626

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Overtonesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001627

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Peakc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001628

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Number of input1 spectrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001728

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:Number of input2 spectrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001729

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:Number of input3 spectrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001730

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:Number of input4 spectrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001731

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:Number of input5 spectrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001732

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:Number of predicted correct proteinsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001733

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Number of Spectra Processed At Oncec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002569

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:Organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001734

This term was made obsolete because it's recommended to use taxonomy: scientific name (MS:1001469) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Peptide CTerminusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001678

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Peptide NTerminusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001679

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Peptide Without Protein Cut Off Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002379

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Peptide Without Protein XCorr Thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002089

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:perform deisotopingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002328

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Polarity Modec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001611

This term was made obsolete because it's recommended to use scan polarity (MS:1000465) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Precursor Mass Tolerancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001659

This term was made obsolete because it's recommended to use search tolerance minus value (MS:1001413) or search tolerance plus value (MS:1001412) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Protein Databasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001661

This term was made obsolete because it's recommended to use database name (MS:1001013) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Protein Relevance Thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001681

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Reference Databasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001735

This term was made obsolete. Use attribute in mzIdentML / mzQuantML instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Relaxed Score Thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002377

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Reporter Ions Quantizer:Integration Methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001698

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Reporter Ions Quantizer:Integration Window Tolerancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001699

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Reporter Ions Quantizer:Quantitation Methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001700

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Residue substitution listc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001736

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Scan Typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001614

This term was made obsolete because it's recommended to use MS1 spectrum (MS:1000579), MSn spectrum (MS:1000580), CRM spectrum (MS:1000581), SIM spectrum (MS:1000582) or SRM spectrum (MS:1000583) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Search Against Decoy Databasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001682

This term was made obsolete because it's recommended to use quality estimation with decoy database (MS:1001194) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Search Modifications Only For Identified Proteinsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001703

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:SEQUEST:Calculate Probability Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001669

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:SEQUEST:CTerminal Modificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001670

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:SEQUEST:Fragment Ion Cutoff Percentagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001671

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge1c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001712

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge2c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001713

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge3c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001714

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge4c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001715

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge1c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001716

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge2c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001717

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge3c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001718

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge4c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001719

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:Low resolution spectra containedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002233

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:SEQUEST:Max Identical Modifications Per Peptidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001672

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:SEQUEST:Maximum Peptides Consideredc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001674

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:SEQUEST:NTerminal Modificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001677

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:SEQUEST:Peptide Relevance Factorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001680

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge1c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001704

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge2c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001705

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge3c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001706

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge4c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001707

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge1c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001708

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge2c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001709

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge3c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001710

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge4c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001711

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:Use Average Fragment Massesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001683

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:SEQUEST:Weight of a Ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001688

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:Weight of b Ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001689

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:Weight of c Ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001690

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:Weight of d Ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001691

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:Weight of v Ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001692

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:Weight of w Ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001693

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:Weight of x Ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001694

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:Weight of y Ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001695

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SEQUEST:Weight of z Ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001696

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:SN Thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001613

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Source file extensionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001737

This term was made obsolete because it's recommended to use mass spectrometer file format (MS:1000560) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Source Filesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001738

This term was made obsolete because it's recommended to use pepXML file (MS:1001421) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Source Files oldc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001739

This term was made obsolete because it's recommended to use pepXML file (MS:1001421) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Spectrum Exporter:Export Formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001701

This term was made obsolete because it's recommended to use one of the 'mass spectrometer file format' terms (MS:1000560) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Spectrum Exporter:File namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001702

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Spectrum Files:Raw File namesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001601

This term was made obsolete because it's recommended to use one of the 'mass spectrometer file format' terms (MS:1000560) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Spectrum Grouper:Allow Mass Analyzer Mismatchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001629

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Spectrum Grouper:Allow MS Order Mismatchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001630

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Spectrum Grouper:Max RT Differencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001631

This term was made obsolete because it's recommended to use retention time window width (MS:1001907) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Spectrum Grouper:Precursor Mass Criterionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001632

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Spectrum Score Filter:Let Pass Above Scoresc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001643

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Spectrum Selector:Ionization Sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001603

This term was made obsolete because it's recommended to use one of the 'inlet type' (MS:1000007) or 'ionization type' (MS:1000008) terms instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Spectrum Selector:Lower RT Limitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001605

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Spectrum Selector:Minimum Peak Countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001609

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range Afterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002081

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd doublec
has_unitsop some u o 0000221c

ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range Beforec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002080

has super-classes
ProteomeDiscoverer input parameterc
has_unitsop some u o 0000221c
has value typeop some xsd doublec

ProteomeDiscoverer:Spectrum Selector:Precursor Selectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001612

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Spectrum Selector:SN Threshold FTonlyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001753

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Spectrum Selector:Total Intensity Thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001615

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Spectrum Selector:Unrecognized Activation Type Replacementsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001616

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Spectrum Selector:Unrecognized Charge Replacementsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001617

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:Spectrum Selector:Unrecognized Mass Analyzer Replacementsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001618

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Spectrum Selector:Unrecognized MS Order Replacementsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001619

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Spectrum Selector:Unrecognized Polarity Replacementsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001620

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Spectrum Selector:Upper RT Limitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001621

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Spectrum Selector:Use New Precursor Reevaluationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001752

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:SRF File Selector:SRF File Pathc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001602

This term was made obsolete. Use attribute in mzIdentML / mzQuantML instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Static Modificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001645

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Static Modification for Xc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001724

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Strict Score Thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002378

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Target FDR Relaxedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001663

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Target FDR Strictc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001664

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Use Average Precursor Massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001666

This term was made obsolete because it's recommended to use parent mass type average (MS:1001212) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:use flanking ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002326

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Use Neutral Loss a Ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001684

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Use Neutral Loss b Ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001685

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Use Neutral Loss y Ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001686

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Use Neutral Loss z Ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001687

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:WinCyg reference databasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001740

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:WinCyg source filesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001741

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd stringc

ProteomeDiscoverer:Xtract:Highest Chargec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001633

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:Xtract:Highest MZc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001634

This term was made obsolete because it's recommended to use scan window upper limit (MS:1000500) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Xtract:Lowest Chargec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001635

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd intc

ProteomeDiscoverer:Xtract:Lowest MZc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001636

This term was made obsolete because it's recommended to use scan window lower limit (MS:1000501) instead.
has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Xtract:Monoisotopic Mass Onlyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001637

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd booleanc

ProteomeDiscoverer:Xtract:Overlapping Remainderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001638

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Xtract:Required Fitting Accuracyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001639

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:Xtract:Resolution At 400c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001640

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeDiscoverer:ZCore:Protein Score Cutoffc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001697

has super-classes
ProteomeDiscoverer input parameterc
has value typeop some xsd floatc

ProteomeXchange accession numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001919

has super-classes
external reference identifierc
has value typeop some xsd stringc

ProteomeXchange accession number version numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001921

has super-classes
external reference identifierc
has value typeop some xsd non negative integerc

ProteomeXchange dataset identifier reanalysis numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002997

has super-classes
external reference identifierc
has value typeop some xsd non negative integerc

ProteomeXchange project tagc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002340

has super-classes
external reference identifierc
has value typeop some xsd stringc

proteomics solution 1c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000186

has super-classes
SCIEX instrument modelc

Proteomics Standards Initiative Mass Spectrometry Vocabulariesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_0000000

ProteoSuitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002124

has super-classes
quantitation software namec

ProteoWizard chainsawc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002207

has super-classes
ProteoWizard softwarec

ProteoWizard idconvertc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002206

has super-classes
ProteoWizard softwarec

ProteoWizard msaccessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002208

has super-classes
ProteoWizard softwarec

ProteoWizard msconvertc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002205

has super-classes
ProteoWizard softwarec

ProteoWizard SeeMSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002209

has super-classes
ProteoWizard softwarec

ProteoWizard softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000615

has super-classes
analysis softwarec
data processing softwarec
has sub-classes
ProteoWizard SeeMSc, ProteoWizard chainsawc, ProteoWizard idconvertc, ProteoWizard msaccessc, ProteoWizard msconvertc

proton affinityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000233

This child of the former purgatory term ion attribute was made obsolete.
has super-classes
has value typeop some xsd floatc

protonated moleculec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000375

This child of the former purgatory term ion chemical type was made obsolete.

protXML formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001422

has super-classes
intermediate analysis formatc

PSI mzData formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000564

has super-classes
mass spectrometer file formatc

PSM is used for peptide-level scoringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002503

has super-classes
peptide sequence-level identification attributec

PSM-level attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002345

has super-classes
single identification result attributec
has sub-classes
PSM-level identification statisticc, ion mobility attributec, number of unmatched peaksc, scan start timec

PSM-level combined FDRScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002356

has super-classes
PSM-level search engine specific statisticc
search engine specific score for proteinsc
has_domainop some value greater than zero but less than or equal to onec
has value typeop some xsd doublec

PSM-level e-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002353

has super-classes
PSM-level identification statisticc
has value typeop some xsd doublec
has_domainop some value greater than zeroc
has sub-classes
MS-GF:EValuec, MS-GF:SpecEValuec, MSPathFinder:EValuec, MSPathFinder:SpecEValuec, ProSight:spectral E-valuec, TopMG:spectral E-valuec, TopPIC:spectral E-valuec

PSM-level FDRScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002355

has super-classes
PSM-level search engine specific statisticc
search engine specific score for proteinsc
has_domainop some value greater than zero but less than or equal to onec
has value typeop some xsd doublec

PSM-level global confidencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002465

has super-classes
PSM-level result list statisticc

PSM-level global FDRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002350

has super-classes
PSM-level result list statisticc
has_domainop some value between 0 and 1 inclusivec
has value typeop some xsd doublec

PSM-level global FNRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002464

has super-classes
PSM-level result list statisticc
has_domainop some value between 0 and 1 inclusivec

PSM-level identification statisticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002347

has super-classes
PSM-level attributec
has sub-classes
PSM-level e-valuec, PSM-level local FDRc, PSM-level p-valuec, PSM-level probabilityc, PSM-level q-valuec, PSM-level search engine specific statisticc, PeptideShaker PSM confidence typec

PSM-level local FDRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002351

has super-classes
PSM-level identification statisticc
has value typeop some xsd doublec
has_domainop some value between 0 and 1 inclusivec
has sub-classes
TopMG:spectral FDRc, TopPIC:spectral FDRc

PSM-level p-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002352

has super-classes
PSM-level identification statisticc
has_domainop some value between 0 and 1 inclusivec
has value typeop some xsd doublec
has sub-classes
TopMG:spectral p-valuec, TopPIC:spectral p-valuec

PSM-level probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002357

has super-classes
PSM-level identification statisticc
has_domainop some value between 0 and 1 inclusivec
has value typeop some xsd doublec

PSM-level q-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002354

has super-classes
PSM-level identification statisticc
has value typeop some xsd doublec
has_domainop some value between 0 and 1 inclusivec
has sub-classes
MS-GF:QValuec, MSPathFinder:QValuec, ProSight:spectral Q-valuec

PSM-level quantification datatypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002736

has super-classes
quantification datatypec

PSM-level result list attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002700

has super-classes
result list attributec
has sub-classes
PSM-level result list statisticc

PSM-level result list statisticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002701

has super-classes
PSM-level result list attributec
has sub-classes
PSM-level global FDRc, PSM-level global FNRc, PSM-level global confidencec, no PSM thresholdc

PSM-level search engine specific statisticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001143

has super-classes
PSM-level identification statisticc
has sub-classes
Amanda:AmandaScorec, Andromeda:PEPc, Andromeda:scorec, Byonic: Peptide AbsLogProbc, Byonic: Peptide AbsLogProb2Dc, Byonic:Delta Scorec, Byonic:DeltaMod Scorec, Byonic:PEPc, Byonic:Peptide LogProbc, Byonic:Scorec, Comet:deltacnc, Comet:deltacnstarc, Comet:matched ionsc, Comet:sprankc, Comet:spscorec, Comet:total ionsc, Comet:xcorrc, DeBunker:scorec, FDRScorec, IdentityE Scorec, KSDP scorec, MS-GF:EValuec, MS-GF:Energyc, MS-GF:PEPc, MS-GF:PepQValuec, MS-GF:QValuec, MS-GF:RawScorec, MS-GF:SpecEValuec, MSFit:Mowse scorec, MSPathFinder:EValuec, MSPathFinder:PepQValuec, MSPathFinder:QValuec, MSPathFinder:RawScorec, MSPathFinder:SpecEValuec, MSPepSearch:scorec, Mascot:expectation valuec, Mascot:homology thresholdc, Mascot:identity thresholdc, Mascot:matched ionsc, Mascot:scorec, Mascot:total ionsc, MaxQuant-DIA PEPc, MaxQuant-DIA scorec, MetaMorpheus:scorec, Morpheus:Morpheus scorec, MyriMatch:MVHc, MyriMatch:mzFidelityc, OMSSA:evaluec, OMSSA:pvaluec, OpenMS:ConsensusID PEPc, OpenMS:Target-decoy PSM q-valuec, OpenPepXL:scorec, OpenXQuest:combined scorec, OpenXQuest:intsumc, OpenXQuest:match-oddsc, OpenXQuest:wTICc, OpenXQuest:xcorr commonc, OpenXQuest:xcorr xlinkc, PEAKS:inChorusPeptideScorec, PEAKS:peptideScorec, PSM-level FDRScorec, PSM-level combined FDRScorec, PeptideShaker PSM confidencec, PeptideShaker PSM scorec, Phenyx:Autoc, Phenyx:Modifc, Phenyx:NumberOfMCc, Phenyx:PepPvaluec, Phenyx:Pepzscorec, Phenyx:Userc, ProLuCID:deltacnc, ProLuCID:xcorrc, ProSight:spectral C-scorec, ProSight:spectral E-valuec, ProSight:spectral P-scorec, ProSight:spectral Q-valuec, Profound:Clusterc, Profound:ClusterRankc, Profound:z valuec, ProteinLynx:Ladder Scorec, ProteinLynx:Log Likelihoodc, ProteinProspector:expectation valuec, ProteinProspector:scorec, ProteinScape:IntensityCoveragec, ProteinScape:PFFSolverExpc, ProteinScape:PFFSolverScorec, ProteinScape:ProfoundProbabilityc, ProteinScape:SearchEventIdc, ProteinScape:SearchResultIdc, ProteinScape:SequestMetaScorec, ProteomeDiscoverer:Delta Scorec, SEQUEST:PeptideIdnumberc, SEQUEST:PeptideNumberc, SEQUEST:PeptideRankSpc, SEQUEST:PeptideSpc, SEQUEST:deltacnc, SEQUEST:deltacnstarc, SEQUEST:matched ionsc, SEQUEST:probabilityc, SEQUEST:sfc, SEQUEST:sprankc, SEQUEST:spscorec, SEQUEST:total ionsc, SEQUEST:xcorrc, SIM-XL scorec, SQID:deltaScorec, SQID:scorec, Scaffold:Peptide Probabilityc, Sonar:Scorec, SpectraST:deltac, SpectraST:discriminant score Fc, SpectraST:dotc, SpectraST:dot_biasc, SpectrumMill:Discriminant Scorec, SpectrumMill:SPIc, SpectrumMill:Scorec, TopMG:spectral E-valuec, TopMG:spectral FDRc, TopMG:spectral p-valuec, TopPIC:spectral E-valuec, TopPIC:spectral FDRc, TopPIC:spectral p-valuec, X!Tandem:expectc, X!Tandem:hyperscorec, ZCore:probScorec, combined FDRScorec, percolator:PEPc, percolator:Q valuec, percolator:scorec, xi:scorec

PSM-level statistical thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002483

has super-classes
spectrum identification statistical thresholdc
has sub-classes
PSM:FDR thresholdc

PSM:FDR thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002260

has super-classes
PSM-level statistical thresholdc
has value typeop some xsd doublec

PTM localization attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002688

has super-classes
analysis attributec
has sub-classes
PTM localization result list statisticc, PTM localization single result statisticc

PTM localization confidence metricc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002538

has super-classes
spectrum identification result detailsc
has value typeop some xsd stringc
has sub-classes
PeptideShaker PTM confidence typec

PTM localization distinct peptide-level statisticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002549

has super-classes
PTM localization single result statisticc
has sub-classes
peptide:Ascorec, peptide:D-Scorec, peptide:H-Scorec, peptide:MD-Scorec, peptide:phosphoRS scorec

PTM localization PSM-level statisticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001968

has super-classes
PTM localization single result statisticc
has sub-classes
Ascorec, D-Scorec, DeBunker:scorec, H-Scorec, MD-Scorec, MSQuant:PTM-scorec, Mascot:PTM site assignment confidencec, MaxQuant:P-site localization probabilityc, MaxQuant:PTM Delta Scorec, MaxQuant:PTM Scorec, MaxQuant:Phospho (STY) Probabilitiesc, MaxQuant:Phospho (STY) Score Diffsc, PTMProphet information contentc, PTMProphet mean best probabilityc, PTMProphet normalized information contentc, PTMProphet probabilityc, TopPIC:MIScorec, phosphoRS scorec, phosphoRS sequence probabilityc, phosphoRS site probabilityc

PTM localization result list statisticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002690

has super-classes
PTM localization attributec
has sub-classes
global FLRc, local FLR at thresholdc

PTM localization score thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002555

has super-classes
spectrum identification result detailsc
has sub-classes
Ascore thresholdc, D-Score thresholdc, DeBunker:score thresholdc, H-Score thresholdc, MD-Score thresholdc, MSQuant:PTM-score thresholdc, Mascot:PTM site assignment confidence thresholdc, MaxQuant:P-site localization probability thresholdc, MaxQuant:PTM Delta Score thresholdc, MaxQuant:PTM Score thresholdc, MaxQuant:Phospho (STY) Probabilities thresholdc, TopPIC:MIScore thresholdc, no modification thresholdc, phosphoRS score thresholdc, phosphoRS site probability thresholdc

PTM localization single result statisticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002689

has super-classes
PTM localization attributec
has sub-classes
PTM localization PSM-level statisticc, PTM localization distinct peptide-level statisticc

PTM scoring algorithm versionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001972

has super-classes
peptide modification detailsc
has value typeop some xsd stringc

PTMProphetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002292

has super-classes
Trans-Proteomic Pipeline softwarec

PTMProphet information contentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003150

has super-classes
PTM localization PSM-level statisticc
has regexpop some regular expression for modification localization scoringc

PTMProphet mean best probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003148

has super-classes
PTM localization PSM-level statisticc
has regexpop some regular expression for modification localization scoringc

PTMProphet normalized information contentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003149

has super-classes
PTM localization PSM-level statisticc
has regexpop some regular expression for modification localization scoringc

PTMProphet probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003147

has super-classes
PTM localization PSM-level statisticc
has regexpop some regular expression for modification localization scoringc

PTX-QCc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003162

has super-classes
analysis softwarec

PubMed identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000879

has super-classes
external reference identifierc
has value typeop some xsd integerc

pulse countingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000118

has super-classes
detector acquisition modec

pulse durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000847

has super-classes
laser attributec
has_unitsop some u o 0000150c
has value typeop some xsd floatc

pulse energyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000846

has super-classes
laser attributec
has value typeop some xsd floatc
has_unitsop some u o 0000112c

pulsed q dissociationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000599

has super-classes
dissociation methodc

PureDiskc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000735

has super-classes
Bruker softwarec

purgatoryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000479

The whole branch purgatory term was made obsolete.

pymzMLc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001914

has super-classes
data processing softwarec

pyrolysis mass spectrometryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000274

has super-classes
ionization typec

pyteomicsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003146

has super-classes
analysis softwarec

python-psimsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002991

has super-classes
conversion softwarec

Q Exactivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001911

has super-classes
Thermo Scientific instrument modelc

Q Exactive HFc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002523

has super-classes
Thermo Scientific instrument modelc

Q Exactive HF-Xc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002877

has super-classes
Thermo Scientific instrument modelc

Q Exactive Plusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002634

has super-classes
Thermo Scientific instrument modelc

Q TRAPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000187

has super-classes
SCIEX instrument modelc

Q-Tof microc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000188

has super-classes
Waters instrument modelc

Q-Tof Premierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000632

has super-classes
Waters instrument modelc

Q-Tof Ultimac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000189

has super-classes
Waters instrument modelc

QSTARc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000190

has super-classes
SCIEX instrument modelc

QSTAR Elitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000655

has super-classes
SCIEX instrument modelc

QSTAR Pulsarc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000656

has super-classes
SCIEX instrument modelc

QSTAR XLc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000657

has super-classes
SCIEX instrument modelc

QTRAP 4500c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002580

has super-classes
SCIEX instrument modelc

QTRAP 5500c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000931

has super-classes
SCIEX instrument modelc

QTRAP 6500c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002581

has super-classes
SCIEX instrument modelc

QTRAP 6500+c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002582

has super-classes
SCIEX instrument modelc

quadraticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000096

has super-classes
scan lawc

quadrupolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000081

has super-classes
mass analyzer typec

quadrupole ion trapc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000082

has super-classes
ion trapc

quality control data formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003161

has super-classes
file formatc
has sub-classes
mzQC formatc

quality estimation by manual validationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001058

has super-classes
quality estimation method detailsc

quality estimation method detailsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001060

has super-classes
search input detailsc
has sub-classes
quality estimation by manual validationc, quality estimation with decoy databasec, quality estimation with implicite decoy sequencesc, report only spectra assigned to identified proteinsc, statistical thresholdc

quality estimation with decoy databasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001194

has super-classes
quality estimation method detailsc
has value typeop some xsd booleanc

quality estimation with implicite decoy sequencesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001454

has super-classes
quality estimation method detailsc

QuaMeter IDFreec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003164

has super-classes
analysis softwarec

QuantAnalysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000736

has super-classes
Bruker softwarec
analysis softwarec
data processing softwarec

quantification data processingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001861

has super-classes
part_ofop some spectrum interpretationc
has sub-classes
ANOVA-testc, Progenesis automatic alignmentc, Progenesis manual alignmentc, Progenesis normalizationc, Variance stabilizing normalizationc, normalization to mean of sum of all proteinsc, quantile normalization, peptidesc, quantile normalization, proteinsc, t-testc

quantification datatypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001805

has super-classes
quantification informationc
has sub-classes
MaxQuant:LFQ intensityc, MaxQuant:MS/MS countc, MaxQuant:PEPc, OpenMS:LFQ intensityc, OpenMS:LFQ spectral countc, PSM-level quantification datatypec, Progenesis:confidence scorec, XIC areac, absolute quantityc, distributed normalized spectral abundance factorc, error on absolute quantityc, feature-level quantification datatypec, intensity of precursor ionc, internal reference abundancec, isotopic pattern areac, max fold changec, molecules per cellc, normalized XIC areac, normalized spectral abundance factorc, p-valuec, peak areac, peptide-level quantification datatypec, product backgroundc, protein group-level quantification datatypec, protein-level quantification datatypec, ratio calculation methodc, reporter ion intensityc, reporter ion normalized valuec, reporter ion raw valuec, small molecule quantification datatypec

quantification file formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002074

has super-classes
file formatc
has sub-classes
mzQuantML formatc

quantification informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001129

has super-classes
part_ofop some spectrum interpretationc
has sub-classes
quantification datatypec, quantification object attributec, quantitation analysis summaryc, quantitation software comment or customizationsc, quantitation software namec, quantitation software versionc

quantification object attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001806

has super-classes
quantification informationc
has sub-classes
assay attributec, assay label attributec, denominator data type attributec, experiment namec, feature attributec, feature list attributec, identification file attributec, numerator data type attributec, peptide consensus attributec, peptide consensus list attributec, protein attributec, protein group attributec, protein group list attributec, protein list attributec, raw file attributec, raw files group attributec, small molecule attributec, small molecule list attributec, small molecule modification attributec, study variable attributec

quantile normalization, peptidesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001864

has super-classes
quantification data processingc

quantile normalization, proteinsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001863

has super-classes
quantification data processingc

quantitation analysis summaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001833

has super-classes
quantification informationc
has sub-classes
LC-MS label-free quantitation analysisc, MS1 label-based analysisc, MS2 tag-based analysisc, SILAC quantitation analysisc, SRM quantitation analysisc, absolute quantitation analysisc, isobaric label quantitation analysisc, metabolic labeling 14N / 15N quantitation analysisc, spectral counting quantitation analysisc

quantitation software comment or customizationsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001832

has super-classes
quantification informationc
has value typeop some xsd stringc
has sub-classes
internal peptide reference usedc, internal protein reference usedc

quantitation software namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001139

has super-classes
softwarec
quantification informationc
has sub-classes
Anubisc, FindPairsc, ITRAQAnalyzerc, IsobariQc, Mascot Distillerc, MaxQuantc, Microsoft Excelc, PEAKS Nodec, PEAKS Onlinec, PEAKS Studioc, PatternLabc, Progenesis LC-MSc, ProteoSuitec, QUIN-XLc, SILACAnalyzerc, Skylinec, Skyline mzQuantML converterc, WARP-LCc, x-Trackerc

quantitation software versionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001140

This term was made obsolete because part of mzQuantML schema.
has super-classes
quantification informationc

quattro microc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000191

has super-classes
Waters instrument modelc

Quattro micro GCc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001789

has super-classes
Waters instrument modelc

Quattro Ultimac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000192

has super-classes
Waters instrument modelc

quick and dirty MALDI sample preparationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001993

has super-classes
matrix application typec

QUIN-XLc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003111

has super-classes
quantitation software namec

quistorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000299

This former purgatory term was made obsolete.

radial ejection linear ion trapc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000083

has super-classes
linear ion trapc

radical ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000376

This child of the former purgatory term ion chemical type was made obsolete.

rapifleXc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003122

has super-classes
Bruker Daltonics flex seriesc

ratio calculation methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002066

has super-classes
quantification datatypec
has value typeop some xsd doublec
has sub-classes
simple ratio of two valuesc

raw data filec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003083

has super-classes
source data filec

raw file attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001817

has super-classes
quantification object attributec
has sub-classes
eight sample runc, four sample runc, one sample runc, three sample runc, two sample runc

raw files group attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001823

has super-classes
quantification object attributec
has sub-classes
merge of runs of 1D gel bandsc

raw inverse reduced ion mobility arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003008

has super-classes
ion mobility arrayc
has_unitsop some volt-second per square centimeterc
has value typeop some xsd floatc

raw ion mobility arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003007

has super-classes
ion mobility arrayc
has_unitsop some u o 0000010c
has value typeop some xsd floatc
has_unitsop some u o 0000028c

raw ion mobility drift time arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003153

has super-classes
ion mobility arrayc
has_unitsop some u o 0000010c
has value typeop some xsd floatc
has_unitsop some u o 0000028c

razor peptidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003015

has super-classes
peptidec

ReAdWc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000541

has super-classes
data processing softwarec

Referencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002866

has super-classes
Experiment additional parameterc
has value typeop some xsd stringc

reference ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000377

This child of the former purgatory term ion chemical type was made obsolete.

reflectronc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000300

has super-classes
ion optics typec

reflectron offc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000105

has super-classes
reflectron statec

reflectron onc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000106

has super-classes
reflectron statec

reflectron statec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000021

has super-classes
mass analyzer attributec
has sub-classes
reflectron offc, reflectron onc

regular expressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002479

has super-classes
part_ofop some Proteomics Standards Initiative Mass Spectrometry Vocabulariesc
has sub-classes
Cleavage agent regular expressionc, Regular expression for adduct ion formulac, regular expression for PEFF molecular sequence typec, regular expression for PEFF sequence statusc, regular expression for a digital object identifier (DOI)c, regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional commentc, regular expression for interaction scores derived from cross-linkingc, regular expression for modification localization scoringc, regular expressions for a GUIDc

regular expression for a digital object identifier (DOI)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002480

has super-classes
regular expressionc

regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional commentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_1002001

has super-classes
regular expressionc

Regular expression for adduct ion formulac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002812

has super-classes
regular expressionc

regular expression for interaction scores derived from cross-linkingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002665

has super-classes
regular expressionc

regular expression for modification localization scoringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002505

has super-classes
regular expressionc

regular expression for PEFF molecular sequence typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_1002002

has super-classes
regular expressionc

regular expression for PEFF sequence statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_1002003

has super-classes
regular expressionc

regular expressions for a GUIDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002231

has super-classes
regular expressionc

report only spectra assigned to identified proteinsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001574

has super-classes
quality estimation method detailsc

reporter ion intensityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001847

has super-classes
quantification datatypec
has value typeop some xsd doublec

reporter ion normalized valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001857

has super-classes
quantification datatypec
has value typeop some xsd doublec

reporter ion raw valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001856

has super-classes
quantification datatypec
has value typeop some xsd doublec

Reprocessed complete datasetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002861

has super-classes
Experiment additional parameterc
has value typeop some xsd stringc

Reprocessed subset datasetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002862

has super-classes
Experiment additional parameterc
has value typeop some xsd stringc

Resamplerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000764

has super-classes
TOPP softwarec

researcherc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001271

has super-classes
role typec

reservoirc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000067

has super-classes
inlet typec

residual gas analyzerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000277

This child of the former purgatory term mass spectrometer was made obsolete.

residue-pair-level global FDRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002677

has super-classes
interaction score derived from cross-linkingc
has_domainop some value between 0 and 1 inclusivec
has regexpop some regular expression for interaction scores derived from cross-linkingc
has value typeop some xsd doublec

resolution arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002529

has super-classes
binary data arrayc

resolution measurement methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000012

has super-classes
measurement methodc
has sub-classes
baselinec, full width at half-maximumc, ten percent valleyc

resolution typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000013

This former purgatory term was made obsolete.

resonance enhanced multiphoton ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000276

has super-classes
ionization typec

resonance ion ejectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000318

This child of the former purgatory term m/z Separation Method was made obsolete.

Result file URIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002848

has super-classes
Associated file URIc
has value typeop some xsd stringc

result list attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002699

has super-classes
identification attributec
has sub-classes
PSM-level result list attributec, peptide sequence-level result list attributec, protein group-level result list attributec, protein-level result list attributec

retention timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000894

has super-classes
peptidoform attributec
has value typeop some xsd floatc
has_unitsop some u o 0000010c
has_unitsop some u o 0000031c
has sub-classes
local retention timec, normalized retention timec, predicted retention timec

retention time alignmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000745

has super-classes
data processing actionc

retention time normalization standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000901

has super-classes
standardc
has sub-classes
H-PINS retention time normalization standardc, iRT retention time normalization standardc

retention time window attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000915

has super-classes
part_ofop some retention timec
has sub-classes
retention time window lower offsetc, retention time window upper offsetc, retention time window widthc

retention time window lower offsetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000916

has super-classes
retention time window attributec
has value typeop some xsd floatc
has_unitsop some u o 0000010c
has_unitsop some u o 0000031c

retention time window upper offsetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000917

has super-classes
retention time window attributec
has_unitsop some u o 0000031c
has value typeop some xsd floatc
has_unitsop some u o 0000010c

retention time window widthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001907

has super-classes
retention time window attributec
has_unitsop some u o 0000031c
has_unitsop some u o 0000010c
has value typeop some xsd floatc

retention time(s)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001114

This term was made obsolete because scan start time (MS:1000016) should be used instead.
has super-classes
peptide sequence-level identification attributec
has value typeop some xsd doublec
has_unitsop some u o 0000010c
has_unitsop some u o 0000031c

ribonucleotidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003037

has super-classes
small moleculec

role typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001266

has super-classes
contact attributec
has sub-classes
instrument vendorc, lab personnelc, programmerc, researcherc, software vendorc

run attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000857

has super-classes
object attributec
has sub-classes
alternating polarity modec, chromatography separationc, fraction identifierc, mass spectrometry imagingc, modulation timec, multidimensional chromatography modulation descriptionc

S-lens voltagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001913

has super-classes
source attributec
has_unitsop some u o 0000218c
has value typeop some xsd floatc

samplec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000457

has super-classes
part_ofop some spectrum generation informationc

sample attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000548

has super-classes
object attributec
part_ofop some samplec
has sub-classes
label free samplec, sample batchc, sample concentrationc, sample labelc, sample massc, sample namec, sample numberc, sample statec, sample volumec

sample batchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000053

has super-classes
sample attributec
has value typeop some xsd stringc

sample concentrationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000006

has super-classes
sample attributec
has value typeop some xsd floatc
has_unitsop some u o 0000175c

sample labelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002602

has super-classes
sample attributec
assay label attributec
has sub-classes
DiART reagentc, DiLeu reagentc, ICAT reagentc, ICPL reagentc, SILAC reagentc, TMT reagentc, iTRAQ reagentc

sample massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000004

has super-classes
sample attributec
has value typeop some xsd floatc
has_unitsop some u o 0000021c

sample namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000002

has super-classes
sample attributec
has value typeop some xsd stringc

sample numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000001

has super-classes
sample attributec
has value typeop some xsd stringc

sample platec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001937

has super-classes
part_ofop some sourcec

sample plate typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001938

has super-classes
part_ofop some sample platec
has sub-classes
coated glass platec, precoated MALDI sample platec, stainless steel platec

sample pre-fractionationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002493

has super-classes
special processingc

sample preparationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000831

has super-classes
object attributec
part_ofop some sample attributec
has sub-classes
in-gel digestionc, in-solution digestionc

sample statec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000003

has super-classes
sample attributec
has sub-classes
emulsionc, gaseous sample statec, liquid sample statec, solid sample statec, solutionc, suspensionc

sample volumec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000005

has super-classes
sample attributec
has_unitsop some u o 0000098c
has value typeop some xsd floatc

sampled noise baseline arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002745

has super-classes
binary data arrayc

sampled noise intensity arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002744

has super-classes
binary data arrayc
has_unitsop some number of detector countsc

sampled noise m/z arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002743

has super-classes
binary data arrayc
has_unitsop some m/zc

sampling frequencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000029

has super-classes
detector attributec
has_unitsop some u o 0000106c
has value typeop some xsd floatc

sandwich MALDI sample preparationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001991

has super-classes
matrix application typec

Savitzky-Golay smoothingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000782

has super-classes
smoothingc

Scaffoldc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001561

has super-classes
analysis softwarec

Scaffold input parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002106

has super-classes
software specific input parameterc
has sub-classes
Scaffold: Minimum Peptide Countc, Scaffold: Minimum Peptide Probabilityc, Scaffold: Minimum Protein Probabilityc

Scaffold nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001562

has super-classes
native spectrum identifier formatc

Scaffold: Minimum Peptide Countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001575

has super-classes
Scaffold input parameterc
has value typeop some xsd positive integerc

Scaffold: Minimum Peptide Probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001577

has super-classes
Scaffold input parameterc
has value typeop some xsd doublec

Scaffold: Minimum Protein Probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001576

has super-classes
Scaffold input parameterc
has value typeop some xsd doublec

Scaffold:Peptide Probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001568

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

Scaffold:Protein Probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001579

has super-classes
search engine specific score for proteinsc
has value typeop some xsd doublec

scanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000441

has super-classes
part_ofop some spectrum generation informationc

scan attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000503

has super-classes
object attributec
part_ofop some scanc
has sub-classes
analyzer scan offsetc, dwell timec, elution timec, filter stringc, first column elution timec, instrument specific scan attributec, interchannel delayc, ion injection timec, ion mobility attributec, mass resolutionc, mass resolving powerc, preset scan configurationc, scan numberc, scan ratec, scan start timec, second column elution timec, zoom scanc

scan directionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000018

has super-classes
part_ofop some scanc
has sub-classes
decreasing m/z scanc, increasing m/z scanc

Scan Functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000017

OBSOLETE This former purgatory term was made obsolete.

scan lawc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000019

has super-classes
part_ofop some scanc
has sub-classes
exponentialc, linearc, quadraticc

scan m/z range?c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000313

This former purgatory term was made obsolete.

scan modec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000036

This term was made obsolete because .

scan numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003057

has super-classes
scan attributec

scan number only nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000776

Used for conversion from mzXML, or DTA folder where native scan numbers can be derived.
has super-classes
native spectrum identifier formatc

scan number only nativeID format, combined spectrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002655

Used for conversion from mzXML, or DTA folder where native scan numbers can be derived.
has super-classes
native spectrum identifier format, combined spectrac
has value typeop some xsd stringc

scan number(s)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001115

This former purgatory term was made obsolete.

scan polarityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000465

has super-classes
part_ofop some scanc
has sub-classes
negative scanc, positive scanc

scan ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000015

has super-classes
scan attributec
has_unitsop some Th/sc
has value typeop some xsd floatc

scan start timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000016

has super-classes
scan attributec
PSM-level attributec
has_unitsop some u o 0000010c
has_unitsop some u o 0000031c
has value typeop some xsd floatc

scan window lower limitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000501

has super-classes
selection window attributec
has value typeop some xsd floatc
has_unitsop some m/zc

scan window upper limitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000500

has super-classes
selection window attributec
has_unitsop some m/zc
has value typeop some xsd floatc

scanning methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000020

OBSOLETE This former purgatory term was made obsolete.

scanning quadrupole position lower bound m/z arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003157

has super-classes
binary data arrayc
has_unitsop some m/zc
has value typeop some xsd floatc

scanning quadrupole position upper bound m/z arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003158

has super-classes
binary data arrayc
has value typeop some xsd floatc
has_unitsop some m/zc

SCIEX API III formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001246

has super-classes
mass spectrometer file formatc

SCIEX instrument modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000121

has super-classes
instrument modelc
has sub-classes
2000 QTRAPc, 2500 QTRAPc, 3200 QTRAPc, 3500 QTRAPc, 4000 QTRAPc, 4000 QTRAPc, 4800 Plus MALDI TOF/TOFc, 5800 TOF/TOFc, API 100c, API 100LCc, API 150EXc, API 150EX Prepc, API 165c, API 2000c, API 300c, API 3000c, API 3200c, API 350c, API 365c, API 4000c, API 5000c, Q TRAPc, QSTARc, QSTAR Elitec, QSTAR Pulsarc, QSTAR XLc, QTRAP 4500c, QTRAP 5500c, QTRAP 6500c, QTRAP 6500+c, SymBiot Ic, SymBiot XVIc, Triple Quad 3500c, Triple Quad 4500c, Triple Quad 5500c, Triple Quad 6500c, Triple Quad 6500+c, Triple Quad 7500c, TripleTOF 4600c, TripleTOF 5600c, TripleTOF 5600+c, TripleTOF 6600c, X500R QTOFc, proteomics solution 1c

SCIEX softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000690

has super-classes
softwarec
has sub-classes
4000 Series Explorer Softwarec, Analystc, BioAnalystc, Cliquidc, GPS Explorerc, LightSight Softwarec, MIDAS Workflow Designerc, MRMPilot Softwarec, MarkerView Softwarec, MultiQuantc, Pro BLASTc, Pro ICATc, Pro IDc, Pro Quantc, ProteinPilot Softwarec, SCIEX TOF/TOF Series Explorer Softwarec, TissueView Softwarec

SCIEX TOF/TOF databasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001481

has super-classes
mass spectrometer file formatc

SCIEX TOF/TOF nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001480

has super-classes
native spectrum identifier formatc

SCIEX TOF/TOF Series Explorer Softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001483

has super-classes
SCIEX softwarec
acquisition softwarec
analysis softwarec
data processing softwarec

SCIEX TOF/TOF T2D formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001560

has super-classes
mass spectrometer file formatc

SCIEX TOF/TOF T2D nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001559

has super-classes
native spectrum identifier formatc

SCiLS Labc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002384

has super-classes
analysis softwarec
data processing softwarec
SCiLS softwarec

SCiLS Lab formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002385

has super-classes
mass spectrometer file formatc

SCiLS softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002383

has super-classes
softwarec
has sub-classes
SCiLS Labc

SCION SQc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002295

has super-classes
Bruker Daltonics SCION seriesc

SCION TQc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002296

has super-classes
Bruker Daltonics SCION seriesc

search database detailsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001011

has super-classes
search input detailsc
has sub-classes
database file formatsc, database filteringc, database local file pathc, database namec, database original uric, database release datec, database sequence detailsc, database sourcec, database typec, database versionc, decoy DB detailsc, number of decoy sequencesc, number of peptide seqs compared to each spectrumc, number of sequences searchedc, translation framec, translation start codonsc, translation tablec, translation table descriptionc

search engine input parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002093

has super-classes
search input detailsc
has sub-classes
common search engine input parameterc, search engine specific input parameterc

Search engine output file URIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002849

has super-classes
Associated file URIc
has value typeop some xsd stringc

search engine specific input metadatac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002432

has super-classes
search input detailsc
has sub-classes
Paragon: modified data dictionary or parameter translationc

search engine specific input parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001302

has super-classes
search engine input parameterc
has sub-classes
Mascot input parameterc, OMSSA input parameterc, PIA workflow parameterc, Paragon input parameterc, Phenyx input parameterc, ProSight input parameterc, ProteinExtractor input parameterc, ProteinScape input parameterc, ProteomeDiscoverer input parameterc, SEQUEST input parameterc, TDPortal input parameterc, TopMG input parameterc, TopPIC input parameterc

search engine specific peptide sequence-level identification statisticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002358

has super-classes
peptide sequence-level identification statisticc
has sub-classes
Andromeda peptide PEPc, MaxQuant-DIA peptide PEPc, OpenMS:Best PSM Scorec, OpenMS:Target-decoy peptide q-valuec, PeptideShaker peptide confidence typec, PeptideShaker peptide scorec, Phenyx:PepPvaluec, distinct peptide-level FDRScorec, distinct peptide-level combined FDRScorec, peptide level scorec

search engine specific scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001153

has super-classes
single identification result attributec
has sub-classes
Byonic:Best LogProbc, Comet:expectation valuec, FDRScorec, IdentiPy:RHNSc, IdentiPy:hyperscorec, OpenPepXL:scorec, OpenXQuest:combined scorec, OpenXQuest:intsumc, OpenXQuest:match-oddsc, OpenXQuest:wTICc, OpenXQuest:xcorr commonc, OpenXQuest:xcorr xlinkc, ProteinProphet:peptide group weightc, ProteinProphet:peptide weightc, SEQUEST:consensus scorec, SEQUEST:expectation valuec, combined FDRScorec, protein ambiguity group result detailsc

search engine specific score for protein groupsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002368

has super-classes
protein group-level identification statisticc
has sub-classes
MaxQuant protein group-level scorec, MetaMorpheus:protein scorec, Morpheus:summed Morpheus scorec, Paragon:total protscorec, Paragon:unused protscorec, PeptideShaker protein group scorec, ProteoAnnotator:count alternative peptidesc, ProteoAnnotator:non-canonical gene model scorec, ProteoGrouper:PAG scorec, protein group-level FDRScorec, protein group-level combined FDRScorec

search engine specific score for proteinsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002363

has super-classes
single protein identification statisticc
has sub-classes
Byonic: Protein AbsLogProbc, Byonic:Best Scorec, Byonic:Protein LogProbc, EPIFANY:Protein posterior probabilityc, FDRScore for proteinsc, MRMaid:peptide scorec, MS-GF:DeNovoScorec, OpenMS:Target-decoy protein q-valuec, PEAKS:inChorusProteinScorec, PEAKS:proteinScorec, PIA:protein scorec, PSM-level FDRScorec, PSM-level combined FDRScorec, Paragon:confidencec, Paragon:contribc, Paragon:expression change p-valuec, Paragon:expression error factorc, Paragon:scorec, Paragon:total protscorec, Paragon:unused protscorec, PeptideShaker peptide confidencec, PeptideShaker peptide scorec, PeptideShaker protein group confidencec, PeptideShaker protein group scorec, Phenyx:ACc, Phenyx:IDc, Phenyx:Modifc, Phenyx:Peptides1c, Phenyx:Peptides2c, Phenyx:Scorec, Phenyx:Userc, ProteinExtractor:Scorec, ProteoGrouper:PDH scorec, SEQUEST:Sequencesc, SEQUEST:Sumc, SEQUEST:TICc, SEQUEST:Uniqc, SEQUEST:spc, SQID:protein scorec, Scaffold:Protein Probabilityc, combined FDRScore for proteinsc, cross-linking scorec, distinct peptide-level FDRScorec, distinct peptide-level combined FDRScorec

search engine specific score for proteoformsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002906

has super-classes
proteoform-level identification statisticc
has sub-classes
TopMG:proteoform-level FDRc, TopPIC:proteoform-level FDRc

search input detailsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001249

has super-classes
part_ofop some spectrum interpretationc
has sub-classes
Paragon: digestionc, TODOscoring modelc, cleavage agent detailsc, ion series considered in searchc, ions series considered in searchc, mass type settingsc, number of spectra searchedc, quality estimation method detailsc, search database detailsc, search engine input parameterc, search engine specific input metadatac, search tolerance specificationc, search typec, software input parameterc, spectra data detailsc, spectrum descriptionsc

search result detailsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001213

This former purgatory term was made obsolete.

search statisticsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001184

has super-classes
spectrum identification result detailsc
has sub-classes
date / time search performedc, number of molecular hypothesis consideredc, search time takenc, study variable average functionc, study variable variation functionc

search time takenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001036

has super-classes
search statisticsc
has value typeop some xsd positive integerc

search tolerance minus valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001413

has super-classes
search tolerance specificationc
has value typeop some xsd doublec
has_unitsop some u o 0000169c
has_unitsop some u o 0000221c
has_unitsop some u o 0000187c
has_unitsop some u o 0000166c

search tolerance plus valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001412

has super-classes
search tolerance specificationc
has_unitsop some u o 0000221c
has_unitsop some u o 0000166c
has_unitsop some u o 0000187c
has value typeop some xsd doublec
has_unitsop some u o 0000169c

search tolerance specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001411

has super-classes
search input detailsc
has sub-classes
search tolerance minus valuec, search tolerance plus valuec

search typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001080

has super-classes
search input detailsc
has sub-classes
combined ms-ms + spectral library searchc, combined pmf + ms-ms searchc, de novo searchc, ms-ms searchc, pmf searchc, special processingc, spectral library searchc, tag searchc

secondc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000039

This term was made obsolete because it was redundant with Unit Ontology second (UO:0000010).

second column elution timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002083

has super-classes
scan attributec
has_unitsop some u o 0000031c
has value typeop some xsd floatc
has_unitsop some u o 0000010c

second-pass peptide identificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002341

has super-classes
peptide sequence-level identification attributec
has value typeop some xsd booleanc

secondary electronc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000352

This former purgatory term was made obsolete.

secondary ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000402

has super-classes
ionization typec

secondary isotope peakc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002697

has super-classes
fragmentation ion typec

sector mass spectrometerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000301

This child of the former purgatory term mass spectrometer was made obsolete.

SELECT SERIES Cyclic IMSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003184

has super-classes
Waters instrument modelc

SELECT SERIES MRTc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003185

has super-classes
Waters instrument modelc

selected ion current chromatogramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000627

has super-classes
ion current chromatogramc

selected ion detectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000091

This child of the former purgatory term Scan Function was made obsolete.

selected ion flow tubec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000281

has super-classes
ion optics typec

selected ion m/zc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000744

has super-classes
ion selection attributec
has_unitsop some m/zc
has value typeop some xsd floatc

selected ion monitoringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000205

has super-classes
mass spectrometry acquisition methodc
data-independent acquisitionc

selected ion monitoring chromatogramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001472

has super-classes
ion current chromatogramc

selected precursor m/zc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002234

has super-classes
ion selection attributec
has value typeop some xsd floatc
has_unitsop some m/zc

selected reaction monitoringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000206

has super-classes
mass spectrometry acquisition methodc
data-independent acquisitionc

selected reaction monitoring chromatogramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001473

has super-classes
ion current chromatogramc

selection window attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000549

has super-classes
object attributec
part_ofop some scanc
has sub-classes
scan window lower limitc, scan window upper limitc

senior authorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002035

has super-classes
contact rolec

septumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000068

has super-classes
inlet typec

SeqStatusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001015

has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc
has regexpop some regular expression for PEFF sequence statusc

sequence coveragec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001093

has super-classes
protein-level identification attributec
has value typeop some xsd decimalc

Sequence database filter typesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001511

has super-classes
database filteringc
has sub-classes
DB MW filterc, DB PI filterc, DB filter on accession numbersc, DB filter on sequence patternc, DB filter taxonomyc

Sequence database filtersc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001512

has super-classes
database filteringc
has sub-classes
DB MW filter maximumc, DB MW filter minimumc, DB PI filter maximumc, DB PI filter minimumc, DB accession filter stringc, DB sequence filter patternc, molecule taxonomyc

sequence multiply subsumable proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002570

has super-classes
protein group or subset relationshipc
has value typeop some xsd stringc

sequence same-set proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001594

has super-classes
protein group or subset relationshipc
has value typeop some xsd stringc

sequence sub-set proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001596

has super-classes
protein group or subset relationshipc
has value typeop some xsd stringc

sequence subsumable proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001598

has super-classes
protein group or subset relationshipc
has value typeop some xsd stringc

sequence-level spectral countc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001842

has super-classes
peptide-level quantification datatypec
has value typeop some xsd intc

SequenceTypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000017

has super-classes
PEFF file header section termc
has value typeop some xsd stringc
has regexpop some regular expression for PEFF molecular sequence typec

sequential m/z separation methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000445

This former purgatory term was made obsolete.

SEQUESTc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001208

has super-classes
analysis softwarec

SEQUEST input parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002096

has super-classes
search engine specific input parameterc
has sub-classes
SEQUEST:CleavesAtc, SEQUEST:DescriptionLinesc, SEQUEST:LimitToc, SEQUEST:NormalizeXCorrValuesc, SEQUEST:OutputLinesc, SEQUEST:ProcessCVc, SEQUEST:SequenceHeaderFilterc, SEQUEST:SequencePartialFilterc, SEQUEST:ShowFragmentIonsc, SEQUEST:ViewCVc, SEQUEST:modeCVc, SEQUEST:selectCVc

SEQUEST out file formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001200

has super-classes
intermediate analysis formatc

SEQUEST out folderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001242

has super-classes
intermediate analysis formatc

SEQUEST SQT formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001563

has super-classes
intermediate analysis formatc

SEQUEST summaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001243

has super-classes
intermediate analysis formatc

SEQUEST:Chromatogramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001102

has super-classes
SEQUEST:ViewCVc
has value typeop some xsd booleanc

SEQUEST:CleavesAtc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001005

has super-classes
SEQUEST input parameterc
has value typeop some xsd stringc

SEQUEST:Consensusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001038

has super-classes
SEQUEST:ViewCVc
has value typeop some xsd positive integerc

SEQUEST:consensus scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001163

has super-classes
search engine specific scorec
has value typeop some xsd doublec

SEQUEST:CullToc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001109

has super-classes
SEQUEST:ProcessCVc
has value typeop some xsd stringc

SEQUEST:deltacnc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001156

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

SEQUEST:deltacnstarc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002250

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

SEQUEST:DescriptionLinesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001009

has super-classes
SEQUEST input parameterc
has value typeop some xsd stringc

SEQUEST:expectation valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001159

has super-classes
search engine specific scorec
has value typeop some xsd doublec

SEQUEST:Fastc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001126

has super-classes
SEQUEST:modeCVc
has value typeop some xsd booleanc

SEQUEST:FormatAndLinksc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001120

has super-classes
SEQUEST:modeCVc
has value typeop some xsd booleanc

SEQUEST:Fullc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001111

has super-classes
SEQUEST:modeCVc
has value typeop some xsd booleanc

SEQUEST:InfoAndLogc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001103

has super-classes
SEQUEST:ViewCVc
has value typeop some xsd booleanc

SEQUEST:LimitToc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001042

has super-classes
SEQUEST input parameterc
has value typeop some xsd positive integerc

SEQUEST:matched ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001161

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd integerc

SEQUEST:modeCVc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001110

has super-classes
SEQUEST input parameterc
has sub-classes
SEQUEST:Fastc, SEQUEST:FormatAndLinksc, SEQUEST:Fullc

SEQUEST:NormalizeXCorrValuesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001026

has super-classes
SEQUEST input parameterc
has value typeop some xsd booleanc

SEQUEST:OutputLinesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001007

has super-classes
SEQUEST input parameterc
has value typeop some xsd non negative integerc

SEQUEST:PeptideIdnumberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001219

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd integerc

SEQUEST:PeptideNumberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001218

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd integerc

SEQUEST:PeptideRankSpc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001217

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd integerc

SEQUEST:PeptideSpc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001215

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

SEQUEST:probabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001154

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

SEQUEST:ProcessAllc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001095

has super-classes
SEQUEST:ProcessCVc
has value typeop some xsd booleanc

SEQUEST:ProcessCVc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001087

has super-classes
SEQUEST input parameterc
has sub-classes
SEQUEST:CullToc, SEQUEST:ProcessAllc, SEQUEST:TopNumberc, SEQUEST:TopPercentMostIntensec

SEQUEST:SelectAdvancedCVc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001145

has super-classes
SEQUEST:selectCVc

SEQUEST:selectCVc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001128

has super-classes
SEQUEST input parameterc
has sub-classes
SEQUEST:SelectAdvancedCVc, SEQUEST:SelectDefaultc

SEQUEST:SelectDefaultc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001144

has super-classes
SEQUEST:selectCVc

SEQUEST:SequenceHeaderFilterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001028

has super-classes
SEQUEST input parameterc
has value typeop some xsd stringc

SEQUEST:SequencePartialFilterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001032

has super-classes
SEQUEST input parameterc
has value typeop some xsd stringc

SEQUEST:Sequencesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001372

has super-classes
search engine specific score for proteinsc
has value typeop some xsd positive integerc

SEQUEST:sfc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001160

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

SEQUEST:ShowFragmentIonsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001037

has super-classes
SEQUEST input parameterc
has value typeop some xsd booleanc

SEQUEST:sort by dCnc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001046

has super-classes
SEQUEST:sortCVc
has value typeop some xsd booleanc

SEQUEST:sort by dMc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001047

has super-classes
SEQUEST:sortCVc
has value typeop some xsd booleanc

SEQUEST:sort by Ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001048

has super-classes
SEQUEST:sortCVc
has value typeop some xsd booleanc

SEQUEST:sort by MH+c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001049

has super-classes
SEQUEST:sortCVc
has value typeop some xsd booleanc

SEQUEST:sort by Pc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001050

has super-classes
SEQUEST:sortCVc
has value typeop some xsd booleanc

SEQUEST:sort by PreviousAminoAcidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001052

has super-classes
SEQUEST:sortCVc
has value typeop some xsd booleanc

SEQUEST:sort by Refc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001053

has super-classes
SEQUEST:sortCVc
has value typeop some xsd booleanc

SEQUEST:sort by RSpc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001059

has super-classes
SEQUEST:sortCVc
has value typeop some xsd booleanc

SEQUEST:sort by Scanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001070

has super-classes
SEQUEST:sortCVc
has value typeop some xsd booleanc

SEQUEST:sort by Sequencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001071

has super-classes
SEQUEST:sortCVc
has value typeop some xsd booleanc

SEQUEST:sort by Sfc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001072

has super-classes
SEQUEST:sortCVc
has value typeop some xsd booleanc

SEQUEST:sort by Spc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001068

has super-classes
SEQUEST:sortCVc
has value typeop some xsd booleanc

SEQUEST:sort by TICc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001069

has super-classes
SEQUEST:sortCVc
has value typeop some xsd booleanc

SEQUEST:sort by XCorrc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001086

has super-classes
SEQUEST:sortCVc
has value typeop some xsd booleanc

SEQUEST:sort by zc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001094

has super-classes
SEQUEST:sortCVc
has value typeop some xsd booleanc

SEQUEST:sortCVc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001041

has super-classes
SEQUEST:ViewCVc
has sub-classes
SEQUEST:sort by Ionsc, SEQUEST:sort by MH+c, SEQUEST:sort by Pc, SEQUEST:sort by PreviousAminoAcidc, SEQUEST:sort by RSpc, SEQUEST:sort by Refc, SEQUEST:sort by Scanc, SEQUEST:sort by Sequencec, SEQUEST:sort by Sfc, SEQUEST:sort by Spc, SEQUEST:sort by TICc, SEQUEST:sort by XCorrc, SEQUEST:sort by dCnc, SEQUEST:sort by dMc, SEQUEST:sort by zc

SEQUEST:spc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001157

has super-classes
search engine specific score for proteinsc
has value typeop some xsd doublec

SEQUEST:sprankc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002249

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd intc

SEQUEST:spscorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002248

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

SEQUEST:Sumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001374

has super-classes
search engine specific score for proteinsc
has value typeop some xsd doublec

SEQUEST:TICc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001373

has super-classes
search engine specific score for proteinsc
has value typeop some xsd doublec

SEQUEST:TopNumberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001106

has super-classes
SEQUEST:ProcessCVc
has value typeop some xsd positive integerc

SEQUEST:TopPercentMostIntensec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001096

has super-classes
SEQUEST:ProcessCVc
has value typeop some xsd doublec

SEQUEST:total ionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001162

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd integerc

SEQUEST:Uniqc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001158

has super-classes
search engine specific score for proteinsc
has value typeop some xsd doublec

SEQUEST:ViewCVc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001006

has super-classes
SEQUEST input parameterc
has sub-classes
SEQUEST:Chromatogramc, SEQUEST:Consensusc, SEQUEST:InfoAndLogc, SEQUEST:sortCVc

SEQUEST:xcorrc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001155

has super-classes
PSM-level search engine specific statisticc
has_orderop some higher score betterc
has value typeop some xsd doublec

SHA-1c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000569

has super-classes
data file checksum typec
has value typeop some xsd stringc

SHA-256c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003151

has super-classes
data file checksum typec
has value typeop some xsd stringc

Shimadzu Biotech database entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000930

has super-classes
mass spectrometer file formatc

Shimadzu Biotech LCD formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003009

has super-classes
mass spectrometer file formatc

Shimadzu Biotech nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000929

has super-classes
native spectrum identifier formatc

Shimadzu Biotech QTOF nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002898

has super-classes
native spectrum identifier formatc

Shimadzu Corporation softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001557

has super-classes
softwarec
has sub-classes
MALDI Solutionsc, MALDI Solutions LC-MALDIc

Shimadzu instrument modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000124

has super-classes
instrument modelc
has sub-classes
Shimadzu MALDI-TOF instrument modelc, Shimadzu Scientific Instruments instrument modelc

Shimadzu MALDI-7090c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002382

has super-classes
Shimadzu MALDI-TOF instrument modelc

Shimadzu MALDI-TOF instrument modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000602

has super-classes
Shimadzu instrument modelc
has sub-classes
AXIMA Assurance Linear MALDI-TOFc, AXIMA CFR MALDI-TOFc, AXIMA Confidence MALDI-TOFc, AXIMA Performance MALDI-TOF/TOFc, AXIMA-CFR plusc, AXIMA-QITc, Shimadzu MALDI-7090c

Shimadzu Scientific Instruments instrument modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000603

has super-classes
Shimadzu instrument modelc
has sub-classes
GCMS-QP2010SEc, LCMS-2010Ac, LCMS-2010EVc, LCMS-2020c, LCMS-8040c, LCMS-8045c, LCMS-8050c, LCMS-8060c, LCMS-9030c, LCMS-IT-TOFc

shuffle-and-reposition decoy spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003193

has super-classes
decoy spectrumc

signal peptidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001021

has super-classes
PEFF molecule processing keywordc
has regexpop some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional commentc
has value typeop some xsd stringc

signal to noise arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000517

has super-classes
binary data arrayc

signal-to-noise ratioc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001884

has super-classes
transition validation attributec
has value typeop some xsd floatc

SILAC heavy reagentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002612

has super-classes
SILAC reagentc

SILAC light reagentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002614

has super-classes
SILAC reagentc

SILAC medium reagentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002613

has super-classes
SILAC reagentc

SILAC quantitation analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001835

has super-classes
quantitation analysis summaryc

SILAC reagentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002611

has super-classes
sample labelc
has sub-classes
SILAC heavy reagentc, SILAC light reagentc, SILAC medium reagentc

SILACAnalyzerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001831

has super-classes
TOPP softwarec
quantitation software namec

SIM spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000582

has super-classes
mass spectrumc

SIM-XLc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003109

has super-classes
analysis softwarec

SIM-XL scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003110

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec
has_orderop some higher score betterc

simple ratio of two valuesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001848

has super-classes
ratio calculation methodc

single identification result attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002694

has super-classes
identification attributec
has sub-classes
PSM-level attributec, cross-linking attributec, isoform-level identification attributec, peptide sequence-level identification attributec, product ion attributec, protein cluster identification attributec, protein group-level identification attributec, protein-level identification attributec, proteoform-level identification attributec, search engine specific scorec, small molecule confidence measurec, small molecule identification attributec

single ion monitoringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000102

This term was made obsolete because it was replaced by single ion monitoring (MS:100205).

single peak list nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000775

The nativeID must be the same as the source file ID. Used for conversion of peak list files with one spectrum per file, typically folder of PKL or DTAs, each sourceFileRef is different.
has super-classes
native spectrum identifier formatc

single peak list nativeID format, combined spectrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002654

The nativeID must be the same as the source file ID. Used for conversion of peak list files with one spectrum per file, typically folder of PKL or DTAs, each sourceFileRef is different.
has super-classes
native spectrum identifier format, combined spectrac
has value typeop some xsd stringc

single protein identification statisticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001116

has super-classes
protein-level identification attributec
has sub-classes
Byonic:Best LogProbc, Expect valuec, PeptideShaker protein confidence typec, confidence scorec, local FDRc, manual validationc, probability for proteinsc, protein identification confidence metricc, protein-level e-valuec, protein-level local FDRc, protein-level p-valuec, protein-level q-valuec, search engine specific score for proteinsc

single reaction monitoringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000103

This term was made obsolete because it was replaced by selected reaction monitoring (MS:1000206).

singleton spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003066

has super-classes
spectrum aggregation typec

site:global FDRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002339

has super-classes
spectrum identification result detailsc
has value typeop some xsd doublec

Skylinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000922

has super-classes
SRM softwarec
quantitation software namec

Skyline mzQuantML converterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002546

has super-classes
quantitation software namec
analysis softwarec

small moleculec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003035

has super-classes
moleculec
has sub-classes
amino acidc, deoxyribonucleotidec, metabolitec, monosaccharidec, ribonucleotidec

small molecule analysis softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002878

has super-classes
analysis softwarec
has sub-classes
Compound Discovererc, MS-DIALc, MyCompoundIDc, PeakForestc, Progenesis QIc, lipidomics analysis softwarec

small molecule attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002118

has super-classes
quantification object attributec

small molecule confidence measurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002888

has super-classes
single identification result attributec
has sub-classes
Progenesis MetaScope scorec, fragmentation scorec, isotopic fit scorec

small molecule identification attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002895

has super-classes
single identification result attributec
has sub-classes
compound identification confidence code in MS-DIALc, compound identification confidence levelc, hr-ms compound identification confidence levelc

small molecule list attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002117

has super-classes
quantification object attributec

small molecule modification attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002119

has super-classes
quantification object attributec

small molecule quantification datatypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002886

has super-classes
quantification datatypec
has sub-classes
Progenesis QI normalised abundancec

SMILES formulac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000868

has super-classes
chemical formulac
has value typeop some xsd stringc

smoothingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000592

has super-classes
data processing actionc
has sub-classes
Gaussian smoothingc, LOWESS smoothingc, Savitzky-Golay smoothingc, moving average smoothingc, wavelet transformation smoothingc

soft ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000403

has super-classes
ionization typec

softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000531

has super-classes
part_ofop some Proteomics Standards Initiative Mass Spectrometry Vocabulariesc
has sub-classes
Agilent softwarec, Applied Biosystems softwarec, BSI softwarec, Bruker softwarec, LECO softwarec, SCIEX softwarec, SCiLS softwarec, SRM softwarec, Shimadzu Corporation softwarec, Thermo Finnigan softwarec, Waters softwarec, acquisition softwarec, analysis softwarec, custom unreleased software toolc, data processing softwarec, library creation softwarec, peptide attribute calculation softwarec, quantitation software namec

software input parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002103

has super-classes
search input detailsc
has sub-classes
common software input parameterc, software specific input parameterc

software specific input parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002105

has super-classes
software input parameterc
has sub-classes
PIA workflow parameterc, Percolator input parameterc, Scaffold input parameterc

software vendorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001267

has super-classes
role typec

software versionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003200

has super-classes
spectral library attributec
has value typeop some xsd stringc

solariXc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001549

has super-classes
Bruker Daltonics solarix seriesc

solid sample statec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000050

has super-classes
sample statec

solid-state laserc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000851

has super-classes
laser typec

solutionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000051

has super-classes
sample statec

Sonar:Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001502

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

sophisticated numerical annotation procedurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001998

has super-classes
area peak pickingc

sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000458

has super-classes
part_ofop some instrumentc

source attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000482

has super-classes
part_ofop some sourcec
has sub-classes
S-lens voltagec, cone voltagec, declustering potentialc, inlet temperaturec, ionization efficiencyc, offset voltagec, source potentialc, source temperaturec, tube lens voltagec

source data filec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000577

has super-classes
spectrum attributec
part_ofop some spectrum generation informationc
has sub-classes
processed data filec, raw data filec

source interfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001931

has super-classes
part_ofop some sourcec

source interface manufacturerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001953

has super-classes
part_ofop some source interfacec
has value typeop some xsd stringc

source interface modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001932

has super-classes
part_ofop some source interfacec
has value typeop some xsd stringc

source potentialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000486

has super-classes
source attributec
has value typeop some xsd floatc
has_unitsop some u o 0000218c

source sprayerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001933

has super-classes
part_ofop some sourcec
has value typeop some xsd stringc

source sprayer manufacturerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001935

has super-classes
has value typeop some xsd stringc
part_ofop some source sprayerc

source sprayer modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001936

has super-classes
has value typeop some xsd stringc
part_ofop some source sprayerc

source sprayer typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001934

has super-classes
part_ofop some source sprayerc

source temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002041

has super-classes
source attributec
has_unitsop some u o 0000027c
has_unitsop some u o 0000012c
has value typeop some xsd floatc

space charge effectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000319

has super-classes
ion optics attributec

spark ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000404

has super-classes
ionization typec

Spark Source Mass Spectrometryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000283

This term was made obsolete because it was replaced by spark ionization (MS:1000404).

spControlc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000737

has super-classes
Bruker softwarec
acquisition softwarec

special processingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002489

has super-classes
search typec
part_ofop some spectrum interpretationc
has sub-classes
consensus scoringc, cross-linking searchc, modification localization scoringc, no special processingc, peptide-level scoringc, proteogenomics searchc, sample pre-fractionationc

SpecificKeyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000018

has super-classes
PEFF file header section termc
has value typeop some xsd stringc

SpecificValuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0000019

has super-classes
PEFF file header section termc
has value typeop some xsd stringc

spectra combinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000570

has super-classes
part_ofop some spectrumc
has sub-classes
mean of spectrac, median of spectrac, no combinationc, sum of spectrac

spectra data detailsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001529

has super-classes
search input detailsc
has sub-classes
mzML unique identifierc, spectrum from ProteinScape database nativeID formatc, spectrum from database string nativeID formatc

SpectraFilterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000765

This term was made obsolete, because it is replaced by the terms under the 'TOPP spectra filter' (MS:1002137) branch.
has super-classes
TOPP softwarec

spectral count featurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002121

has super-classes
feature attributec

spectral count peptide level quantitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002015

has super-classes
spectral counting quantitation analysisc
has value typeop some xsd booleanc

spectral count protein level quantitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002016

has super-classes
spectral counting quantitation analysisc
has value typeop some xsd booleanc

spectral count proteingroup level quantitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002017

has super-classes
spectral counting quantitation analysisc
has value typeop some xsd booleanc

spectral counting quantitation analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001836

has super-classes
quantitation analysis summaryc
has sub-classes
spectral count peptide level quantitationc, spectral count protein level quantitationc, spectral count proteingroup level quantitationc

spectral libraryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003170

has super-classes
part_ofop some Proteomics Standards Initiative Mass Spectrometry Vocabulariesc

spectral library attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003171

has super-classes
part_ofop some library entry commentc
has sub-classes
change logc, copyright noticec, library URIc, library creation softwarec, library descriptionc, library entry classc, library format versionc, library identifierc, library namec, library provenance attributec, library versionc, license URIc, software versionc

spectral library searchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001031

has super-classes
search typec

SpectraSTc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001477

has super-classes
analysis softwarec

SpectraST:deltac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001420

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

SpectraST:discriminant score Fc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001419

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

SpectraST:dotc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001417

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

SpectraST:dot_biasc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001418

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000442

has super-classes
part_ofop some spectrum generation informationc
has sub-classes
interpreted spectrumc, uninterpreted spectrumc

spectrum aggregation attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003064

has super-classes
spectrum attributec
has sub-classes
number of replicate spectra availablec, number of replicate spectra usedc, spectrum aggregation typec

spectrum aggregation typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003065

has super-classes
spectrum aggregation attributec
has sub-classes
best replicate spectrumc, consensus spectrumc, singleton spectrumc

spectrum attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000499

has super-classes
part_ofop some spectrumc
has sub-classes
NIST msp commentc, ms levelc, precursor apex intensityc, previous MSn-1 scan precursor intensityc, source data filec, spectrum aggregation attributec, spectrum indexc, spectrum namec, spectrum origin attributec, spectrum titlec, universal spectrum identifierc

spectrum descriptionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001356

has super-classes
search input detailsc
has sub-classes
spectrum quality descriptionsc

spectrum from database integer nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001526

A unique identifier of a spectrum stored in a database (e.g. a PRIMARY KEY identifier).
has super-classes
native spectrum identifier formatc

spectrum from database string nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001532

A unique identifier of a spectrum stored in a database (e.g. a PRIMARY KEY identifier).
has super-classes
native spectrum identifier formatc
spectra data detailsc

spectrum from ProteinScape database nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001531

A unique identifier of a spectrum stored in a ProteinScape database.
has super-classes
native spectrum identifier formatc
spectra data detailsc

spectrum generation informationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001458

has super-classes
part_ofop some Proteomics Standards Initiative Mass Spectrometry Vocabulariesc
has sub-classes
Experiment additional parameterc, mass spectrometry acquisition method aspectc, native source pathc

spectrum identification list result detailsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002438

has super-classes
part_ofop some spectrum interpretationc
has sub-classes
final PSM listc, intermediate PSM listc

spectrum identification result detailsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001405

has super-classes
part_ofop some spectrum interpretationc
has sub-classes
InChIKeyc, MGF raw scansc, MGF scansc, Mascot query numberc, PRIDE XMLc, PTM localization confidence metricc, PTM localization score thresholdc, analysis attributec, consensus resultc, delta Mc, delta m/zc, false localization ratec, number of peptide seqs compared to each spectrumc, peak list raw scansc, peak list scansc, search statisticsc, site:global FDRc, spectrum titlec, spectrum titlec, splash keyc

spectrum identification statistical thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002573

has super-classes
statistical thresholdc
has sub-classes
PSM-level statistical thresholdc, peptide-level statistical thresholdc, proteoform-level statistical thresholdc

spectrum identifier nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000777

Used for conversion from mzData. The spectrum id attribute is referenced.
has super-classes
native spectrum identifier formatc

spectrum identifier nativeID format, combined spectrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002656

Used for conversion from mzData. The spectrum id attribute is referenced.
has super-classes
native spectrum identifier format, combined spectrac
has value typeop some xsd stringc

spectrum indexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003062

has super-classes
spectrum attributec

spectrum instrument descriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000459

This former purgatory term was made obsolete.

spectrum interpretationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001000

has super-classes
part_ofop some Proteomics Standards Initiative Mass Spectrometry Vocabulariesc

Spectrum Mill for MassHunter Workstationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000687

has super-classes
Agilent softwarec
analysis softwarec
data processing softwarec

spectrum multiply subsumable proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002571

has super-classes
protein group or subset relationshipc
has value typeop some xsd stringc

spectrum namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003061

has super-classes
spectrum attributec

spectrum origin attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003071

has super-classes
spectrum attributec
has sub-classes
spectrum origin typec

spectrum origin typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003072

has super-classes
spectrum origin attributec
has sub-classes
decoy spectrumc, demultiplexed spectrumc, observed spectrumc, predicted spectrumc

spectrum propertyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003058

has super-classes
part_ofop some spectrumc
has sub-classes
base peak intensityc, base peak m/zc, highest observed m/zc, highest observed wavelengthc, lowest observed m/zc, lowest observed wavelengthc, number of data pointsc, number of peaksc, peak list raw scansc, peak list scansc, total ion currentc

spectrum quality descriptionsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001357

has super-classes
spectrum descriptionsc
has sub-classes
msmsEval qualityc

spectrum representationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000525

has super-classes
part_ofop some spectrumc
has sub-classes
centroid spectrumc, profile spectrumc

spectrum same-set proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001595

has super-classes
protein group or subset relationshipc
has value typeop some xsd stringc

spectrum sub-set proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001597

has super-classes
protein group or subset relationshipc
has value typeop some xsd stringc

spectrum subsumable proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001599

has super-classes
protein group or subset relationshipc
has value typeop some xsd stringc

spectrum titlec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000796

This is the preferred storage place for the spectrum TITLE from an MGF peak list.
has super-classes
spectrum attributec
spectrum identification result detailsc
has value typeop some xsd stringc

spectrum titlec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001416

has super-classes
spectrum identification result detailsc
has value typeop some xsd stringc

spectrum typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000559

has super-classes
part_ofop some spectrumc
has sub-classes
PDA spectrumc, absorption spectrumc, calibration spectrumc, electromagnetic radiation spectrumc, emission spectrumc, mass spectrumc

SpectrumMill directoriesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001567

has super-classes
intermediate analysis formatc

SpectrumMill:Discriminant Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001580

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

SpectrumMill:Scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001572

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

SpectrumMill:SPIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001573

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

spin coating MALDI sample preparationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001992

has super-classes
matrix application typec

splash keyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002599

has super-classes
spectrum identification result detailsc
has value typeop some xsd stringc

sprayed MALDI matrix preparationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000838

has super-classes
matrix application typec

SQ Detector 2c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002274

has super-classes
Waters instrument modelc

SQIDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001886

has super-classes
analysis softwarec
data processing softwarec

SQID:deltaScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001888

has super-classes
PSM-level search engine specific statisticc

SQID:protein scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001889

has super-classes
search engine specific score for proteinsc

SQID:scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001887

has super-classes
PSM-level search engine specific statisticc

SRM feature level quantitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002281

has super-classes
SRM quantitation analysisc

SRM peptide level quantitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002282

has super-classes
SRM quantitation analysisc

SRM protein level quantitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002283

has super-classes
SRM quantitation analysisc

SRM proteingroup level quantitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002284

has super-classes
SRM quantitation analysisc

SRM quantitation analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001838

has super-classes
quantitation analysis summaryc
has sub-classes
SRM feature level quantitationc, SRM peptide level quantitationc, SRM protein level quantitationc, SRM proteingroup level quantitationc

SRM softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000871

has super-classes
softwarec
has sub-classes
ATAQSc, Anubisc, MRMaidc, MaRiMbac, Skylinec, TIQAMc

SRM spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000583

has super-classes
mass spectrumc

SRM transition attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002222

has super-classes
ion selection attributec
part_ofop some transitionc
has sub-classes
number of precursor ion observationsc, number of product ion observationsc, precursor ion detection probabilityc, product ion detection probabilityc, product ion drift timec

SRM transition IDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001829

has super-classes
feature attributec
has value typeop some xsd stringc

SRM transition typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002006

has super-classes
part_ofop some transitionc
has sub-classes
decoy SRM transitionc, target SRM transitionc

SSQ 7000c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000748

has super-classes
Finnigan MAT instrument modelc

SSRCalcc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000874

has super-classes
peptide attribute calculation softwarec

stable ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000378

This child of the former purgatory term ion stability type was made obsolete.

stainless steel platec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001939

has super-classes
sample plate typec

standardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000898

has super-classes
part_ofop some Proteomics Standards Initiative Mass Spectrometry Vocabulariesc
has sub-classes
de facto standardc, minimum information standardc, retention time normalization standardc

standard errorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002885

has super-classes
study variable variation functionc

static fieldc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000320

has super-classes
ion optics typec

static supply electrosprayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001942

has super-classes
electrospray supply typec

statistical thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002482

has super-classes
quality estimation method detailsc
has sub-classes
no thresholdc, protein detection statistical thresholdc, spectrum identification statistical thresholdc

stored waveform inverse fourier transformc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000284

has super-classes
mass analyzer typec

stripped peptide sequencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000888

has super-classes
peptidoform attributec
has value typeop some xsd stringc

structural formulac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000867

has super-classes
chemical formulac
has value typeop some xsd stringc

study variable attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001807

has super-classes
quantification object attributec
has sub-classes
biological replicatec, dilution series, concentration Xc, experimental condition 'case'c, experimental condition 'control'c, experimental condition 'disease'c, experimental condition 'healthy'c, generic experimental conditionc, technical replicatec, time series, time point Xc

study variable average functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002882

has super-classes
search statisticsc
has sub-classes
meanc, medianc

study variable variation functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002884

has super-classes
search statisticsc
has sub-classes
standard errorc, variation coefficientc

submitter keywordc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001925

has super-classes
external reference keywordc
has value typeop some xsd stringc

suface ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000280

This term was made obsolete because it was replaced by surface ionization (MS:1000406).

sum of MatchedFeature valuesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001849

This term was made obsolete because the concept MatchedFeature was dropped.
has super-classes
feature-level quantification datatypec
has value typeop some xsd doublec

sum of spectrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000571

has super-classes
spectra combinationc

superelastic collisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000438

This child of the former purgatory term ion reaction was made obsolete.

supplemental beam-type collision-induced dissociationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002678

has super-classes
beam-type collision-induced dissociationc

supplemental collision energyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002680

has super-classes
precursor activation attributec
has value typeop some xsd floatc
has_unitsop some u o 0000266c

supplemental collision-induced dissociationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002679

has super-classes
collision-induced dissociationc

supported by repository but incomplete data and/or metadatac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003087

has super-classes
Experiment additional parameterc

Supported dataset by repositoryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002856

has super-classes
Experiment additional parameterc

surface enhanced laser desorption ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000278

has super-classes
surface ionizationc

surface enhanced neat desorptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000279

has super-classes
surface ionizationc

surface ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000406

has super-classes
ionization typec
has sub-classes
surface enhanced laser desorption ionizationc, surface enhanced neat desorptionc

surface-assisted laser desorption ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000405

has super-classes
desorption ionizationc

surface-induced dissociationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000136

has super-classes
dissociation methodc

surface-induced reactionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000439

This child of the former purgatory term ion reaction was made obsolete.

Surveyor MSQc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000193

has super-classes
Thermo Finnigan instrument modelc

Surveyor PDAc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000622

has super-classes
Thermo Scientific instrument modelc

suspensionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000052

has super-classes
sample statec

sustained off-resonance irradiationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000282

has super-classes
dissociation methodc

SVc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001007

has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc

SymBiot Ic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000194

has super-classes
SCIEX instrument modelc

SymBiot XVIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000195

has super-classes
SCIEX instrument modelc

Synapt G2 HDMSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001777

has super-classes
Waters instrument modelc

Synapt G2 MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001778

has super-classes
Waters instrument modelc

Synapt G2-S HDMSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001779

has super-classes
Waters instrument modelc

Synapt G2-S MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001780

has super-classes
Waters instrument modelc

SYNAPT G2-Sic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002726

has super-classes
Waters instrument modelc

Synapt HDMSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001781

has super-classes
Waters instrument modelc

Synapt MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001782

has super-classes
Waters instrument modelc

Synapt XSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003183

has super-classes
Waters instrument modelc

synchronous prefilter selectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002528

has super-classes
instrument specific scan attributec

t-testc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002070

has super-classes
quantification data processingc
has value typeop some xsd stringc

t-test p-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001855

has super-classes
p-valuec
has value typeop some xsd doublec

tab delimited text formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000914

has super-classes
intermediate analysis formatc
file formatc
has sub-classes
mzTabc

tag searchc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001082

has super-classes
search typec

TagReconc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001587

has super-classes
analysis softwarec

tandem mass spectrometerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000302

This child of the former purgatory term mass spectrometer was made obsolete.

target inclusion exclusion priorityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000919

has super-classes
part_ofop some target listc
has sub-classes
excludes supersede includesc, includes supersede excludesc

target listc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000918

has super-classes
part_ofop some spectrum generation informationc

target SRM transitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002007

has super-classes
SRM transition typec

TargetAnalysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000738

has super-classes
Bruker softwarec

TaxNamec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001004

has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc

taxonomy nomenclaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001090

has super-classes
molecule taxonomyc

taxonomy: common namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001468

has super-classes
molecule taxonomyc
has value typeop some xsd stringc

taxonomy: NCBI TaxIDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001467

has super-classes
molecule taxonomyc
has value typeop some xsd positive integerc

taxonomy: scientific namec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001469

has super-classes
molecule taxonomyc
has value typeop some xsd stringc

taxonomy: Swiss-Prot IDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001470

has super-classes
molecule taxonomyc
has value typeop some xsd stringc

TDPortalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003142

has super-classes
analysis softwarec

TDPortal input parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003137

has super-classes
search engine specific input parameterc
has sub-classes
ProSight:Run Annotated Proteoform Search modec, ProSight:Run Subsequence Search modec, ProSight:Run delta m modec

technical replicatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001808

has super-classes
study variable attributec
has value typeop some xsd stringc

temperature arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000822

has super-classes
binary data arrayc
has_unitsop some u o 0000012c

TEMPUS TOFc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000196

has super-classes
Thermo Finnigan instrument modelc

ten percent valleyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000087

has super-classes
resolution measurement methodc

text formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001369

has super-classes
mass spectrometer file formatc

Th/sc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000807

has super-classes
u o 0000000

theoretical average m/zc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003054

has super-classes
peptidoform ion propertyc

theoretical massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001117

has super-classes
peptide sequence-level identification attributec
has value typeop some xsd doublec
has_unitsop some u o 0000221c

theoretical monoisotopic m/zc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003053

has super-classes
peptidoform ion propertyc

thermal ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000407

has super-classes
ionization typec

Thermo Electron instrument modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000492

has super-classes
Thermo Fisher Scientific instrument modelc

Thermo Finnigan instrument modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000125

has super-classes
Thermo Fisher Scientific instrument modelc
has sub-classes
DELTA plusAdvantagec, DELTAplusXPc, DSQc, GC Quantumc, LCQ Advantagec, LCQ Classicc, LCQ Decac, LCQ Deca XP Plusc, LCQ Fleetc, PolarisQc, Surveyor MSQc, TEMPUS TOFc, TRACE DSQc, TRITONc, TSQ Quantumc, neptunec

Thermo Finnigan softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000693

has super-classes
softwarec
has sub-classes
Bioworksc, PinPointc, Proteome Discovererc, Xcaliburc

Thermo Fisher Scientific instrument modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000483

has super-classes
instrument modelc
has sub-classes
Finnigan MAT instrument modelc, Thermo Electron instrument modelc, Thermo Finnigan instrument modelc, Thermo Scientific instrument modelc

Thermo nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000768

has super-classes
native spectrum identifier formatc

Thermo nativeID format, combined spectrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002647

has super-classes
native spectrum identifier format, combined spectrac
has value typeop some xsd stringc

Thermo RAW formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000563

has super-classes
mass spectrometer file formatc

Thermo Scientific instrument modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000494

has super-classes
Thermo Fisher Scientific instrument modelc
has sub-classes
Accela PDAc, DFSc, DSQ IIc, Element 2c, Element GDc, Element XRc, Exactivec, Exactive Plusc, GC IsoLinkc, ISQc, ITQ 1100c, ITQ 700c, ITQ 900c, LTQc, LTQ FTc, LTQ FT Ultrac, LTQ Orbitrapc, LTQ Orbitrap Classicc, LTQ Orbitrap Discoveryc, LTQ Orbitrap Elitec, LTQ Orbitrap Velosc, LTQ Orbitrap Velos Proc, LTQ Orbitrap XLc, LTQ Orbitrap XL ETDc, LTQ Velosc, LTQ Velos ETDc, LTQ XLc, LTQ XL ETDc, LXQc, MALDI LTQ Orbitrapc, MALDI LTQ XLc, Orbitrap Eclipsec, Orbitrap Exploris 120c, Orbitrap Exploris 240c, Orbitrap Exploris 480c, Orbitrap Fusionc, Orbitrap Fusion ETDc, Orbitrap Fusion Lumosc, Orbitrap ID-Xc, Q Exactivec, Q Exactive HFc, Q Exactive HF-Xc, Q Exactive Plusc, Surveyor PDAc, TSQ 8000 Evoc, TSQ 9000c, TSQ Altisc, TSQ Endurac, TSQ Quantisc, TSQ Quantivac, TSQ Quantum Accessc, TSQ Quantum Ultrac, TSQ Quantum Ultra AMc, TSQ Vantagec, Velos Plusc

ThermoRawFileParserc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003145

has super-classes
data processing softwarec

thermospray inletc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000069

has super-classes
inlet typec

three sample runc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001820

has super-classes
raw file attributec

Tidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002575

has super-classes
analysis softwarec

time arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000595

has super-classes
binary data arrayc
has_unitsop some u o 0000010c
has_unitsop some u o 0000031c

time lag focusingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000286

has super-classes
ion optics typec

time series, time point Xc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001815

has super-classes
study variable attributec
has value typeop some xsd intc

time unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000550

This term was made obsolete because it was redundant with the Unit Ontology term time unit (UO:0000003).

time-delayed fragmentation spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000790

has super-classes
MSn spectrumc

time-digital converterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000119

has super-classes
detector acquisition modec

time-of-flightc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000084

has super-classes
mass analyzer typec

time-of-flight mass spectrometerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000287

This child of the former purgatory term mass spectrometer was made obsolete.

timsTOFc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003229

has super-classes
Bruker Daltonics timsTOF seriesc

timsTOF fleXc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003124

has super-classes
Bruker Daltonics timsTOF seriesc

timsTOF Proc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003005

has super-classes
Bruker Daltonics timsTOF seriesc

timsTOF Pro 2c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003230

has super-classes
Bruker Daltonics timsTOF seriesc

timsTOF SCPc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003231

has super-classes
Bruker Daltonics timsTOF seriesc

TIQAMc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000923

has super-classes
SRM softwarec

TissueView Softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000664

has super-classes
SCIEX softwarec
analysis softwarec
data processing softwarec

TMT quantitation analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002010

has super-classes
isobaric label quantitation analysisc

TMT reagentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002615

has super-classes
sample labelc
has sub-classes
TMT reagent 126c, TMT reagent 127c, TMT reagent 127Cc, TMT reagent 127Nc, TMT reagent 128c, TMT reagent 128Cc, TMT reagent 128Nc, TMT reagent 129c, TMT reagent 129Cc, TMT reagent 129Nc, TMT reagent 130c, TMT reagent 130Cc, TMT reagent 130Nc, TMT reagent 131c

TMT reagent 126c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002616

has super-classes
TMT reagentc

TMT reagent 127c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002617

has super-classes
TMT reagentc

TMT reagent 127Cc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002764

has super-classes
TMT reagentc

TMT reagent 127Nc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002763

has super-classes
TMT reagentc

TMT reagent 128c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002618

has super-classes
TMT reagentc

TMT reagent 128Cc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002766

has super-classes
TMT reagentc

TMT reagent 128Nc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002765

has super-classes
TMT reagentc

TMT reagent 129c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002619

has super-classes
TMT reagentc

TMT reagent 129Cc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002768

has super-classes
TMT reagentc

TMT reagent 129Nc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002767

has super-classes
TMT reagentc

TMT reagent 130c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002620

has super-classes
TMT reagentc

TMT reagent 130Cc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002770

has super-classes
TMT reagentc

TMT reagent 130Nc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002769

has super-classes
TMT reagentc

TMT reagent 131c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002621

has super-classes
TMT reagentc

TODOscoring modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001065

This term was made obsolete and is replaced by the term (MS:1001961).
has super-classes
search input detailsc

TOF Total Path Lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000022

has super-classes
mass analyzer attributec
has value typeop some xsd floatc
has_unitsop some u o 0000008c

TOFCalibrationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000766

has super-classes
TOPP softwarec

tolerance on typesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001057

has super-classes
modification parametersc

top 20 peak unassigned intensity fractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003080

has super-classes
interpreted spectrum attributec

top hat baseline reductionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001994

has super-classes
baseline reductionc

TopFDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002902

has super-classes
analysis softwarec

TopMGc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002903

has super-classes
analysis softwarec

TopMG input parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002934

has super-classes
search engine specific input parameterc
has sub-classes
TopMG:N-term formc, TopMG:error tolerancec, TopMG:fixed modificationc, TopMG:max shiftc, TopMG:mod filec, TopMG:proteoform graph gap sizec, TopMG:proteoform-level cutoff typec, TopMG:proteoform-level cutoff valuec, TopMG:spectral cutoff typec, TopMG:spectral cutoff valuec, TopMG:thread numberc, TopMG:use ASF-DIAGONALc, TopMG:use TopFD featurec, TopMG:variable PTM numberc, TopMG:variable PTM number in proteoform graph gapc

TopMG:error tolerancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002937

has super-classes
TopMG input parameterc
has value typeop some xsd integerc

TopMG:fixed modificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002935

has super-classes
TopMG input parameterc

TopMG:max shiftc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002938

has super-classes
TopMG input parameterc
has value typeop some xsd integerc

TopMG:mod filec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002943

has super-classes
TopMG input parameterc

TopMG:N-term formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002936

has super-classes
TopMG input parameterc

TopMG:proteoform graph gap sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002946

has super-classes
TopMG input parameterc
has value typeop some xsd integerc

TopMG:proteoform-level cutoff typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002941

has super-classes
TopMG input parameterc
has value typeop some xsd stringc

TopMG:proteoform-level cutoff valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002942

has super-classes
TopMG input parameterc
has value typeop some xsd doublec

TopMG:proteoform-level FDRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002952

has super-classes
search engine specific score for proteoformsc
proteoform-level local FDRc
has value typeop some xsd doublec

TopMG:spectral cutoff typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002939

has super-classes
TopMG input parameterc
has value typeop some xsd stringc

TopMG:spectral cutoff valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002940

has super-classes
TopMG input parameterc
has value typeop some xsd doublec

TopMG:spectral E-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002950

has super-classes
PSM-level search engine specific statisticc
PSM-level e-valuec
has value typeop some xsd doublec
has_orderop some lower score betterc

TopMG:spectral FDRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002951

has super-classes
PSM-level search engine specific statisticc
PSM-level local FDRc
has value typeop some xsd doublec

TopMG:spectral p-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002953

has super-classes
PSM-level search engine specific statisticc
PSM-level p-valuec
has value typeop some xsd doublec

TopMG:thread numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002944

has super-classes
TopMG input parameterc
has value typeop some xsd integerc

TopMG:use ASF-DIAGONALc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002949

has super-classes
TopMG input parameterc
has value typeop some xsd booleanc

TopMG:use TopFD featurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002945

has super-classes
TopMG input parameterc
has value typeop some xsd booleanc

TopMG:variable PTM numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002947

has super-classes
TopMG input parameterc
has value typeop some xsd integerc

TopMG:variable PTM number in proteoform graph gapc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002948

has super-classes
TopMG input parameterc
has value typeop some xsd integerc

TOPP AdditiveSeriesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002162

has super-classes
TOPP softwarec

TOPP CompNovoc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002178

has super-classes
TOPP softwarec

TOPP CompNovoCIDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002179

has super-classes
TOPP softwarec

TOPP ConsensusIDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002188

has super-classes
TOPP softwarec

TOPP ConsensusMapNormalizerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002172

has super-classes
TOPP softwarec

TOPP Dechargerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002163

has super-classes
TOPP softwarec

TOPP DTAExtractorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002154

has super-classes
TOPP softwarec

TOPP EICExtractorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002164

has super-classes
TOPP softwarec

TOPP FalseDiscoveryRatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002204

has super-classes
TOPP softwarec

TOPP feature finderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002165

has super-classes
TOPP softwarec
has sub-classes
TOPP FeatureFinderCentroidedc, TOPP FeatureFinderIsotopeWaveletc, TOPP FeatureFinderMRMc, TOPP FeatureFinderMetaboc, TOPP FeatureFinderRawc

TOPP feature linkerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002174

has super-classes
TOPP softwarec
has sub-classes
TOPP FeatureLinkerLabeledc, TOPP FeatureLinkerUnlabeledc, TOPP FeatureLinkerUnlabeledQTc

TOPP FeatureFinderCentroidedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002166

has super-classes
TOPP feature finderc

TOPP FeatureFinderIsotopeWaveletc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002168

has super-classes
TOPP feature finderc

TOPP FeatureFinderMetaboc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002169

has super-classes
TOPP feature finderc

TOPP FeatureFinderMRMc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002170

has super-classes
TOPP feature finderc

TOPP FeatureFinderRawc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002167

has super-classes
TOPP feature finderc

TOPP FeatureLinkerLabeledc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002175

has super-classes
TOPP feature linkerc

TOPP FeatureLinkerUnlabeledc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002176

has super-classes
TOPP feature linkerc

TOPP FeatureLinkerUnlabeledQTc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002177

has super-classes
TOPP feature linkerc

TOPP HighResPrecursorMassCorrectorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002161

has super-classes
TOPP softwarec

TOPP IDConflictResolverc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002189

has super-classes
TOPP softwarec

TOPP IDFileConverterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002156

has super-classes
TOPP softwarec

TOPP IDFilterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002190

has super-classes
TOPP softwarec

TOPP IDMapperc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002191

has super-classes
TOPP softwarec

TOPP IDMergerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002155

has super-classes
TOPP softwarec

TOPP IDPosteriorErrorProbabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002192

has super-classes
TOPP softwarec

TOPP IDRTCalibrationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002193

has super-classes
TOPP softwarec

TOPP InspectAdapterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002181

has super-classes
TOPP software adaptorc

TOPP map alignerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002147

has super-classes
TOPP softwarec
has sub-classes
TOPP MapAlignerIdentificationc, TOPP MapAlignerPoseClusteringc, TOPP MapAlignerSpectrumc

TOPP MapAlignerIdentificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002148

has super-classes
TOPP map alignerc

TOPP MapAlignerPoseClusteringc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002149

has super-classes
TOPP map alignerc

TOPP MapAlignerSpectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002150

has super-classes
TOPP map alignerc

TOPP MapRTTransformerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002173

has super-classes
TOPP softwarec

TOPP MascotAdapterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002182

has super-classes
TOPP software adaptorc

TOPP MascotAdapterOnlinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002183

has super-classes
TOPP software adaptorc

TOPP MassTraceExtractorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002159

has super-classes
TOPP softwarec

TOPP MRMMapperc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002196

has super-classes
TOPP softwarec

TOPP MzTabExporterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002158

has super-classes
TOPP softwarec

TOPP noise filterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002131

has super-classes
TOPP softwarec
has sub-classes
TOPP NoiseFilterGaussianc, TOPP NoiseFilterSGolayc

TOPP NoiseFilterGaussianc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002132

has super-classes
TOPP noise filterc

TOPP NoiseFilterSGolayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002133

has super-classes
TOPP noise filterc

TOPP OMSSAAdapterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002184

has super-classes
TOPP software adaptorc

TOPP OpenSwath componentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002197

has super-classes
TOPP softwarec
has sub-classes
TOPP OpenSwathAnalyzerc, TOPP OpenSwathChromatogramExtractorc, TOPP OpenSwathDecoyGeneratorc, TOPP OpenSwathFeatureXMLToTSVc, TOPP OpenSwathRTNormalizerc

TOPP OpenSwathAnalyzerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002198

has super-classes
TOPP OpenSwath componentc

TOPP OpenSwathChromatogramExtractorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002199

has super-classes
TOPP OpenSwath componentc

TOPP OpenSwathDecoyGeneratorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002200

has super-classes
TOPP OpenSwath componentc

TOPP OpenSwathFeatureXMLToTSVc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002201

has super-classes
TOPP OpenSwath componentc

TOPP OpenSwathRTNormalizerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002202

has super-classes
TOPP OpenSwath componentc

TOPP peak pickerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002134

has super-classes
TOPP softwarec
has sub-classes
TOPP PeakPickerHiResc, TOPP PeakPickerWaveletc

TOPP PeakPickerHiResc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002135

has super-classes
TOPP peak pickerc

TOPP PeakPickerWaveletc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002136

has super-classes
TOPP peak pickerc

TOPP PepNovoAdapterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002185

has super-classes
TOPP software adaptorc

TOPP PeptideIndexerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002194

has super-classes
TOPP softwarec

TOPP PrecursorIonSelectorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002195

has super-classes
TOPP softwarec

TOPP PrecursorMassCorrectorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002160

has super-classes
TOPP softwarec

TOPP ProteinInferencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002203

has super-classes
TOPP softwarec

TOPP ProteinQuantifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002171

has super-classes
TOPP softwarec

TOPP softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000752

has super-classes
analysis softwarec
data processing softwarec
has sub-classes
BaselineFilterc, DBExporterc, DBImporterc, EPIFANYc, FileConverterc, FileFilterc, FileMergerc, ITRAQAnalyzerc, InternalCalibrationc, MapAlignerc, MapNormalizerc, NoiseFilterc, OpenPepXLc, OpenXQuestc, PeakPickerc, Resamplerc, SILACAnalyzerc, SpectraFilterc, TOFCalibrationc, TOPP AdditiveSeriesc, TOPP CompNovoc, TOPP CompNovoCIDc, TOPP ConsensusIDc, TOPP ConsensusMapNormalizerc, TOPP DTAExtractorc, TOPP Dechargerc, TOPP EICExtractorc, TOPP FalseDiscoveryRatec, TOPP HighResPrecursorMassCorrectorc, TOPP IDConflictResolverc, TOPP IDFileConverterc, TOPP IDFilterc, TOPP IDMapperc, TOPP IDMergerc, TOPP IDPosteriorErrorProbabilityc, TOPP IDRTCalibrationc, TOPP MRMMapperc, TOPP MapRTTransformerc, TOPP MassTraceExtractorc, TOPP MzTabExporterc, TOPP OpenSwath componentc, TOPP PeptideIndexerc, TOPP PrecursorIonSelectorc, TOPP PrecursorMassCorrectorc, TOPP ProteinInferencec, TOPP ProteinQuantifierc, TOPP SpecLibSearcherc, TOPP SpectraMergerc, TOPP feature finderc, TOPP feature linkerc, TOPP map alignerc, TOPP noise filterc, TOPP peak pickerc, TOPP software adaptorc, TOPP spectra filterc

TOPP software adaptorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002180

has super-classes
TOPP softwarec
has sub-classes
TOPP InspectAdapterc, TOPP MascotAdapterc, TOPP MascotAdapterOnlinec, TOPP OMSSAAdapterc, TOPP PepNovoAdapterc, TOPP XTandemAdapterc

TOPP SpecLibSearcherc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002187

has super-classes
TOPP softwarec

TOPP spectra filterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002137

has super-classes
TOPP softwarec
has sub-classes
TOPP SpectraFilterBernNormc, TOPP SpectraFilterMarkerMowerc, TOPP SpectraFilterNLargestc, TOPP SpectraFilterNormalizerc, TOPP SpectraFilterParentPeakMowerc, TOPP SpectraFilterScalerc, TOPP SpectraFilterSqrtMowerc, TOPP SpectraFilterThresholdMowerc, TOPP SpectraFilterWindowMowerc

TOPP SpectraFilterBernNormc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002138

has super-classes
TOPP spectra filterc

TOPP SpectraFilterMarkerMowerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002139

has super-classes
TOPP spectra filterc

TOPP SpectraFilterNLargestc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002140

has super-classes
TOPP spectra filterc

TOPP SpectraFilterNormalizerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002141

has super-classes
TOPP spectra filterc

TOPP SpectraFilterParentPeakMowerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002142

has super-classes
TOPP spectra filterc

TOPP SpectraFilterScalerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002143

has super-classes
TOPP spectra filterc

TOPP SpectraFilterSqrtMowerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002144

has super-classes
TOPP spectra filterc

TOPP SpectraFilterThresholdMowerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002145

has super-classes
TOPP spectra filterc

TOPP SpectraFilterWindowMowerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002146

has super-classes
TOPP spectra filterc

TOPP SpectraMergerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002157

has super-classes
TOPP softwarec

TOPP XTandemAdapterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002186

has super-classes
TOPP software adaptorc

TopPICc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002901

has super-classes
analysis softwarec

TopPIC input parameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002912

has super-classes
search engine specific input parameterc
has sub-classes
TopPIC:N-term formc, TopPIC:combined spectrum numberc, TopPIC:error tolerancec, TopPIC:fixed modificationc, TopPIC:generating functionc, TopPIC:max shiftc, TopPIC:min shiftc, TopPIC:mod filec, TopPIC:proteoform-level cutoff typec, TopPIC:proteoform-level cutoff valuec, TopPIC:shift numc, TopPIC:spectral cutoff typec, TopPIC:spectral cutoff valuec, TopPIC:thread numberc, TopPIC:use TopFD featurec

TopPIC:combined spectrum numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002924

has super-classes
TopPIC input parameterc
has value typeop some xsd integerc

TopPIC:error tolerancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002915

has super-classes
TopPIC input parameterc
has value typeop some xsd integerc

TopPIC:fixed modificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002913

has super-classes
TopPIC input parameterc

TopPIC:generating functionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002923

has super-classes
TopPIC input parameterc
has value typeop some xsd booleanc

TopPIC:max shiftc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002916

has super-classes
TopPIC input parameterc
has value typeop some xsd integerc

TopPIC:min shiftc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002917

has super-classes
TopPIC input parameterc
has value typeop some xsd integerc

TopPIC:MIScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002932

has super-classes
PTM localization PSM-level statisticc
has value typeop some xsd stringc

TopPIC:MIScore thresholdc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002933

has super-classes
PTM localization score thresholdc
has value typeop some xsd doublec

TopPIC:mod filec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002925

has super-classes
TopPIC input parameterc

TopPIC:N-term formc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002914

has super-classes
TopPIC input parameterc

TopPIC:proteoform-level cutoff typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002921

has super-classes
TopPIC input parameterc
has value typeop some xsd stringc

TopPIC:proteoform-level cutoff valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002922

has super-classes
TopPIC input parameterc
has value typeop some xsd doublec

TopPIC:proteoform-level FDRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002930

has super-classes
search engine specific score for proteoformsc
proteoform-level local FDRc
has value typeop some xsd doublec

TopPIC:shift numc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002918

has super-classes
TopPIC input parameterc
has value typeop some xsd integerc

TopPIC:spectral cutoff typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002919

has super-classes
TopPIC input parameterc
has value typeop some xsd stringc

TopPIC:spectral cutoff valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002920

has super-classes
TopPIC input parameterc
has value typeop some xsd doublec

TopPIC:spectral E-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002928

has super-classes
PSM-level search engine specific statisticc
PSM-level e-valuec
has value typeop some xsd doublec
has_orderop some lower score betterc

TopPIC:spectral FDRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002929

has super-classes
PSM-level search engine specific statisticc
PSM-level local FDRc
has value typeop some xsd doublec

TopPIC:spectral p-valuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002931

has super-classes
PSM-level search engine specific statisticc
PSM-level p-valuec
has value typeop some xsd doublec

TopPIC:thread numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002926

has super-classes
TopPIC input parameterc
has value typeop some xsd integerc

TopPIC:use TopFD featurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002927

has super-classes
TopPIC input parameterc
has value typeop some xsd booleanc

total ion currentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000285

has super-classes
spectrum propertyc
has value typeop some xsd floatc

total ion current chromatogramc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000235

has super-classes
ion current chromatogramc

total unassigned intensity fractionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003079

has super-classes
interpreted spectrum attributec

total XIC areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002412

has super-classes
peptide-level quantification datatypec
has value typeop some xsd doublec

TRACE DSQc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000197

has super-classes
Thermo Finnigan instrument modelc

TraML formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002411

has super-classes
method file formatc

Tranche file hashc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001927

has super-classes
external reference identifierc
has value typeop some xsd stringc

Tranche project hashc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001928

has super-classes
external reference identifierc
has value typeop some xsd stringc

Trans-Proteomic Pipelinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002285

has super-classes
analysis softwarec

Trans-Proteomic Pipeline softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002286

has super-classes
analysis softwarec
part_ofop some Trans-Proteomic Pipelinec
has sub-classes
ASAPRatioc, Librac, PTMProphetc, PeptideProphetc, ProteinProphetc, XPRESSc, iProphetc

transient recorderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000120

has super-classes
detector acquisition modec

transit peptidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001022

has super-classes
PEFF molecule processing keywordc
has value typeop some xsd stringc
has regexpop some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional commentc

transitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000908

has super-classes
part_ofop some spectrum generation informationc

transition optimized on specified instrumentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000910

has super-classes
transition validation methodc

transition predicted by informatic analysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000913

has super-classes
transition validation methodc

transition purported from an MS/MS spectrum on a different, specified instrumentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000912

has super-classes
transition validation methodc

transition validated with an MS/MS spectrum on specified instrumentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000911

has super-classes
transition validation methodc

transition validation attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001882

has super-classes
part_ofop some transitionc
has sub-classes
coefficient of variationc, signal-to-noise ratioc

transition validation methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000909

has super-classes
part_ofop some transitionc
has sub-classes
transition optimized on specified instrumentc, transition predicted by informatic analysisc, transition purported from an MS/MS spectrum on a different, specified instrumentc, transition validated with an MS/MS spectrum on specified instrumentc

translation framec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001024

has super-classes
search database detailsc

translation start codonsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001410

has super-classes
search database detailsc
has value typeop some xsd stringc

translation tablec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001025

has super-classes
search database detailsc
has value typeop some xsd stringc

translation table descriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001423

has super-classes
search database detailsc
has value typeop some xsd any u r ic

transmissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000236

has super-classes
instrument attributec
has value typeop some xsd floatc

transmission quadrupole mass spectrometerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000303

This child of the former purgatory term mass spectrometer was made obsolete.

trap-type collision-induced dissociationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002472

has super-classes
collision-induced dissociationc

Trapperc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000553

has super-classes
data processing softwarec

travelling wave ion mobility mass spectrometerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001797

This child of the former purgatory term ion mobility spectrometry was made obsolete.

Triple Quad 3500c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002591

has super-classes
SCIEX instrument modelc

Triple Quad 4500c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002592

has super-classes
SCIEX instrument modelc

Triple Quad 5500c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002593

has super-classes
SCIEX instrument modelc

Triple Quad 6500c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002594

has super-classes
SCIEX instrument modelc

Triple Quad 6500+c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002595

has super-classes
SCIEX instrument modelc

Triple Quad 7500c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003144

has super-classes
SCIEX instrument modelc

TripleTOF 4600c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002583

has super-classes
SCIEX instrument modelc

TripleTOF 5600c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000932

has super-classes
SCIEX instrument modelc

TripleTOF 5600+c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002584

has super-classes
SCIEX instrument modelc

TripleTOF 6600c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002533

has super-classes
SCIEX instrument modelc

TRITONc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000198

has super-classes
Thermo Finnigan instrument modelc

TRIZAIC UPLC nanoTilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001769

has super-classes
Waters instrument modelc

truncation and zlib compressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003088

has super-classes
binary data compression typec

truncation, delta prediction and zlib compressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003089

has super-classes
binary data compression typec

truncation, linear prediction and zlib compressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003090

has super-classes
binary data compression typec

TruTOFc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001804

has super-classes
LECO instrument modelc

TrypChymoc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001312

has super-classes
cleavage agent namec
has regexpop some (?<=[FYWLKR])(?!P)c

Trypsinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001251

has super-classes
cleavage agent namec
has regexpop some (?<=[KR])(?!P)c

Trypsin/Pc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001313

has super-classes
cleavage agent namec
has regexpop some (?<=[KR])c

TSQc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000750

has super-classes
Finnigan MAT instrument modelc

TSQ 7000c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000749

has super-classes
Finnigan MAT instrument modelc

TSQ 8000 Evoc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002525

has super-classes
Thermo Scientific instrument modelc

TSQ 9000c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002876

has super-classes
Thermo Scientific instrument modelc

TSQ Altisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002874

has super-classes
Thermo Scientific instrument modelc

TSQ Endurac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002419

has super-classes
Thermo Scientific instrument modelc

TSQ Quantisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002875

has super-classes
Thermo Scientific instrument modelc

TSQ Quantivac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002418

has super-classes
Thermo Scientific instrument modelc

TSQ Quantumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000199

has super-classes
Thermo Finnigan instrument modelc

TSQ Quantum Accessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000644

has super-classes
Thermo Scientific instrument modelc

TSQ Quantum Ultrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000751

has super-classes
Thermo Scientific instrument modelc

TSQ Quantum Ultra AMc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000743

has super-classes
Thermo Scientific instrument modelc

TSQ Vantagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001510

has super-classes
Thermo Scientific instrument modelc

tube lens voltagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000877

has super-classes
source attributec
has_unitsop some u o 0000218c
has value typeop some xsd floatc

two sample runc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001819

has super-classes
raw file attributec

two-dimensional gas chromatography with discrete modulation time stepsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002086

has super-classes
multidimensional chromatography modulation descriptionc

two-dimensional gas chromatography with fixed modulation timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002085

has super-classes
multidimensional chromatography modulation descriptionc

two-dimensional liquid chromatography with discrete modulation time stepsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002088

has super-classes
multidimensional chromatography modulation descriptionc

two-dimensional liquid chromatography with fixed modulation timec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002087

has super-classes
multidimensional chromatography modulation descriptionc

UIMF formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002531

has super-classes
mass spectrometer file formatc

UIMF nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002532

has super-classes
native spectrum identifier formatc

ultimac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000200

has super-classes
IonSpec instrument modelc

ultraflexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000201

has super-classes
Bruker Daltonics flex seriesc

ultraflex III TOF/TOFc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000705

has super-classes
Bruker Daltonics flex seriesc

ultraflex TOF/TOFc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000202

has super-classes
Bruker Daltonics flex seriesc

ultrafleXtremec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001544

has super-classes
Bruker Daltonics flex seriesc

UltroTOF-Qc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001539

has super-classes
Bruker Daltonics BioTOF seriesc

unidentified modification monoisotopic mass deltac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003081

has super-classes
peptide modification detailsc
has value typeop some xsd doublec
has_unitsop some u o 0000221c

unified atomic mass unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000237

This term was made obsolete because it was redundant with Unit Ontology dalton (UO:0000221).

UNIFYc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001796

has super-classes
Waters softwarec
analysis softwarec
data processing softwarec

unimolecular dissociationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000440

This child of the former purgatory term ion reaction was made obsolete.

uninterpreted spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003076

has super-classes
spectrumc

UniProtKB text sequence formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002659

has super-classes
database file formatsc

UniProtKB XML sequence formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002660

has super-classes
database file formatsc

unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000460

This term was made obsolete because it was redundant with the Unit Ontology term unit (UO:0000000).
has super-classes
part_ofop some spectrum generation informationc

universal spectrum identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003063

has super-classes
spectrum attributec

unknown modificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001460

has super-classes
peptide modification detailsc

unlabeled peptidoformc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000892

has super-classes
peptidoform labeling statec

unmapped peptidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002740

has super-classes
proteogenomics attributec

unmapped proteinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002741

has super-classes
proteogenomics attributec

unnatural peptidoform decoy spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003195

has super-classes
decoy spectrumc

unrelated species decoy spectrumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003196

has super-classes
decoy spectrumc

unspecific cleavagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001956

has super-classes
cleavage agent namec

unstable ionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000379

This child of the former purgatory term ion stability type was made obsolete.

Unsupported dataset by repositoryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002857

has super-classes
Experiment additional parameterc

V8-DEc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001314

has super-classes
cleavage agent namec
has regexpop some (?<=[BDEZ])(?!P)c

V8-Ec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001315

has super-classes
cleavage agent namec
has regexpop some (?<=[EZ])(?!P)c

vacuum drying MALDI sample preparationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001987

has super-classes
matrix application typec

value between 0 and 1 inclusivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002305

has super-classes
domain rangec

value between 0 and 1000 inclusivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002753

has super-classes
domain rangec

value greater than zeroc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002306

has super-classes
domain rangec

value greater than zero but less than or equal to onec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002349

has super-classes
domain rangec

Variable modificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1003022

has super-classes
modification parametersc
named element in mzIdentMLc

Varian instrument modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000489

has super-classes
instrument modelc
has sub-classes
IonSpec instrument modelc

Variance stabilizing normalizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002211

has super-classes
quantification data processingc

Variantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001011

This term was made obsolete in favor of VariantSimple and VariantComplex.
has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc
has regexpop some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional commentc

VariantComplexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001029

has super-classes
PEFF file sequence entry termc
has regexpop some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional commentc
has value typeop some xsd stringc

VariantSimplec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001028

has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc
has regexpop some regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional commentc

variation coefficientc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002963

has super-classes
study variable variation functionc

Velos Plusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001909

has super-classes
Thermo Scientific instrument modelc

vendorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000030

This term was made obsolete because it was replaced by instrument model (MS:1000031).

vertical ionizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000408

has super-classes
ionization typec

Vion IMS QTofc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002728

has super-classes
Waters instrument modelc

volt-second per square centimeterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002814

has super-classes
u o 0000000

Voyager Biospectrometry Workstation Systemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000539

has super-classes
Applied Biosystems softwarec
acquisition softwarec
analysis softwarec
data processing softwarec

Voyager-DE PROc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000203

has super-classes
Applied Biosystems instrument modelc

Voyager-DE STRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000204

has super-classes
Applied Biosystems instrument modelc

WARP-LCc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000739

has super-classes
Bruker softwarec
quantitation software namec

Waters instrument modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000126

has super-classes
instrument modelc
has sub-classes
3100c, ACQUITY UPLCc, ACQUITY UPLC H-Classc, ACQUITY UPLC H-Class Bioc, ACQUITY UPLC I-Classc, ACQUITY UPLC Systems with 2D Technologyc, Acquity SQDc, Acquity TQDc, Acquity UPLC FLRc, Acquity UPLC PDAc, Auto Spec Ultima NTc, AutoSpec Premierc, GCTc, GCT Premierc, IsoPrimec, IsoProbec, IsoProbe Tc, M@LDI Lc, M@LDI LRc, MALDI SYNAPT G2-Sic, MALDI Synapt G2 HDMSc, MALDI Synapt G2 MSc, MALDI Synapt G2-S HDMSc, MALDI Synapt G2-S MSc, MALDI Synapt HDMSc, MALDI Synapt MSc, NG-5400c, Platform ICPc, Q-Tof Premierc, Q-Tof Ultimac, Q-Tof microc, Quattro Ultimac, Quattro micro GCc, SELECT SERIES Cyclic IMSc, SELECT SERIES MRTc, SQ Detector 2c, SYNAPT G2-Sic, Synapt G2 HDMSc, Synapt G2 MSc, Synapt G2-S HDMSc, Synapt G2-S MSc, Synapt HDMSc, Synapt MSc, Synapt XSc, TRIZAIC UPLC nanoTilec, Vion IMS QTofc, Xevo G2 Q-Tofc, Xevo G2 Tofc, Xevo G2 XS Tofc, Xevo G2-S QTofc, Xevo G2-S Tofc, Xevo Q-Tofc, Xevo TQ MSc, Xevo TQ-Sc, Xevo TQ-S microc, Xevo TQ-XSc, Xevo TQDc, nanoACQUITY UPLCc, nanoACQUITY UPLC System with 1D Technologyc, nanoACQUITY UPLC with HDX Technologyc, quattro microc

Waters nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000769

has super-classes
native spectrum identifier formatc

Waters nativeID format, combined spectrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002648

has super-classes
native spectrum identifier format, combined spectrac
has value typeop some xsd stringc

Waters raw formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000526

has super-classes
mass spectrometer file formatc

Waters softwarec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000694

has super-classes
softwarec
has sub-classes
Empowerc, MassLynxc, ProteinLynx Global Serverc, UNIFYc

wavelengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000843

This term was made obsolete because it was redundant with the Pato Ontology term wavelength (UO:0001242).
has super-classes
laser attributec
has_unitsop some u o 0000018c
has value typeop some xsd floatc

wavelength arrayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000617

has super-classes
binary data arrayc
has_unitsop some u o 0000018c

wavelet transformation smoothingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001997

has super-classes
smoothingc

WIFF nativeID formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000770

has super-classes
native spectrum identifier formatc

WIFF nativeID format, combined spectrac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002649

has super-classes
native spectrum identifier format, combined spectrac
has value typeop some xsd stringc

X!Tandemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001476

has super-classes
analysis softwarec

X!Tandem xml formatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001401

has super-classes
intermediate analysis formatc

X!Tandem:expectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001330

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

X!Tandem:hyperscorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001331

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

x-Trackerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002123

has super-classes
quantitation software namec

X500R QTOFc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002674

has super-classes
SCIEX instrument modelc

Xcaliburc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000532

has super-classes
Thermo Finnigan softwarec
acquisition softwarec
analysis softwarec
data processing softwarec

XCMSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001582

has super-classes
analysis softwarec
data processing softwarec

XCMS:areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002832

has super-classes
feature-level quantification datatypec
has value typeop some xsd doublec

XCMS:intfc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002830

has super-classes
feature-level quantification datatypec
has value typeop some xsd doublec

XCMS:intoc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002829

has super-classes
feature-level quantification datatypec
has value typeop some xsd doublec

XCMS:maxoc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002831

has super-classes
feature-level quantification datatypec
has value typeop some xsd doublec

Xevo G2 Q-Tofc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001783

has super-classes
Waters instrument modelc

Xevo G2 Tofc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001784

has super-classes
Waters instrument modelc

Xevo G2 XS Tofc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002729

has super-classes
Waters instrument modelc

Xevo G2-S QTofc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002276

has super-classes
Waters instrument modelc

Xevo G2-S Tofc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002275

has super-classes
Waters instrument modelc

Xevo Q-Tofc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001785

has super-classes
Waters instrument modelc

Xevo TQ MSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001790

has super-classes
Waters instrument modelc

Xevo TQ-Sc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001792

has super-classes
Waters instrument modelc

Xevo TQ-S microc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002731

has super-classes
Waters instrument modelc

Xevo TQ-XSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002730

has super-classes
Waters instrument modelc

Xevo TQDc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001791

has super-classes
Waters instrument modelc

xic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002544

has super-classes
analysis softwarec

xi:scorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002545

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec
has_orderop some higher score betterc

XIC areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001858

has super-classes
quantification datatypec
has value typeop some xsd doublec

xiFDRc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002543

has super-classes
analysis softwarec

XPRESSc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1002290

has super-classes
Trans-Proteomic Pipeline softwarec

XRefc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PEFF_0001019

has super-classes
PEFF file sequence entry termc
has value typeop some xsd stringc

ZCore:probScorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1001952

has super-classes
PSM-level search engine specific statisticc
has value typeop some xsd doublec

zlib compressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000574

has super-classes
binary data compression typec

zoom scanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000497

has super-classes
scan attributec

Object Properties

has regexpop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/ms#has_regexp

has value typeop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/ms#has_value_type

has_domainop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/ms#has_domain

has_orderop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/ms#has_order

has_unitsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/ms#has_units

part_ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/ms#part_of

Annotation Properties

auto generated byap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#auto-generated-by

commentap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#comment

database_cross_referenceap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasDbXref

dateap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#date

default namespaceap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#default-namespace

definitionap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000115

deprecatedap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2002/07/owl#deprecated

has_exact_synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasExactSynonym

has_narrow_synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym

has_obo_format_versionap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion

has_obo_namespaceap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasOBONamespace

has_related_synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym

idap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#id

ion massap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/ionMass_

labelap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#label

namespace-id-ruleap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#NamespaceIdRule

saved byap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#saved-by

term replaced byap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0100001

Namespace Declarations back to ToC

default namespace
http://purl.obolibrary.org/obo/ms.owl#
4-1-67
http://purl.obolibrary.org/obo/ms/4.1.67/
ms
http://purl.obolibrary.org/obo/ms#
obo
http://purl.obolibrary.org/obo/
oboInOwl
http://www.geneontology.org/formats/oboInOwl#
owl
http://www.w3.org/2002/07/owl#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
xsd
http://www.w3.org/2001/XMLSchema#

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni.