Classes
- ((?<=D))|((?=D))
- (?<=[^E]E)
- (?<=[ALIV])(?
- (?<=[BDEZ])(?!P)
- (?<=[EZ])(?!P)
- (?<=[FL])
- (?<=[FYWL])(?!P)
- (?<=[FYWLKR])(?!P)
- (?<=[HKR]P)(?
- (?<=[KR])
- (?<=[KR])(?!P)
- (?<=K)
- (?<=K)(?!P)
- (?<=M)
- (?<=R)(?!P)
- (?<=W)
- (?=[BD])
- (?=[DE])
- (?=[KR])
- 1200 series LC/MSD SL
- 1200 series LC/MSD VL
- 16-bit float
- 2-iodobenzoate
- 2000 QTRAP
- 2500 QTRAP
- 2E Mass Spectrum
- 3100
- 32-bit float
- 32-bit integer
- 3200 QTRAP
- 3500 QTRAP
- 4000 QTRAP
- 4000 QTRAP
- 4000 Series Explorer Software
- 4700 Explorer
- 4700 Proteomics Analyzer
- 4800 Plus MALDI TOF/TOF
- 4800 Proteomics Analyzer
- 5800 TOF/TOF
- 6110 Quadrupole LC/MS
- 6120A Quadrupole LC/MS
- 6120B Quadrupole LC/MS
- 6130 Quadrupole LC/MS
- 6140 Quadrupole LC/MS
- 6150 Quadrupole LC/MS
- 6210 Time-of-Flight LC/MS
- 6220 Time-of-Flight LC/MS
- 6224 Time-of-Flight LC/MS
- 6230A Time-of-Flight LC/MS
- 6230B Time-of-Flight LC/MS
- 6300 Series Ion Trap Data Analysis Software
- 6310 Ion Trap LC/MS
- 6320 Ion Trap LC/MS
- 6330 Ion Trap LC/MS
- 6340 Ion Trap LC/MS
- 64-bit float
- 64-bit integer
- 6410 Triple Quadrupole LC/MS
- 6420 Triple Quadrupole LC/MS
- 6430 Triple Quadrupole LC/MS
- 6460 Triple Quadrupole LC/MS
- 6490 Triple Quadrupole LC/MS
- 6495A Triple Quadrupole LC/MS
- 6495B Triple Quadrupole LC/MS
- 6510 Quadrupole Time-of-Flight LC/MS
- 6520A Quadrupole Time-of-Flight LC/MS
- 6520B Q-TOF LC/MS
- 6530A Q-TOF LC/MS
- 6530B Q-TOF LC/MS
- 6538 Q-TOF LC/MS
- 6540 Q-TOF LC/MS
- 6542 Q-TOF LC/MS
- 6545 Q-TOF LC/MS
- 6550 iFunnel Q-TOF LC/MS
- 6550A iFunnel Q-TOF LC/MS
- 6560 Q-TOF LC/MS
- 6570 Q-TOF LC/MS
- 7000A Triple Quadrupole GC/MS
- 7000B Triple Quadrupole GC/MS
- 7800 Quadrupole ICP-MS
- 8800 Triple Quadrupole ICP-MS
- AA sequence
- AAIndex mass table
- ABI WIFF format
- absolute quantitation analysis
- absolute quantity
- absorption chromatogram
- absorption spectrum
- Accela PDA
- accelerating voltage
- accelerator mass spectrometry
- Accepted manuscript
- accuracy
- accurate mass
- acquisition parameter
- acquisition software
- Acquity SQD
- Acquity TQD
- ACQUITY UPLC
- Acquity UPLC FLR
- ACQUITY UPLC H-Class
- ACQUITY UPLC H-Class Bio
- ACQUITY UPLC I-Class
- Acquity UPLC PDA
- ACQUITY UPLC Systems with 2D Technology
- activation energy
- add_others
- Additional associated raw file URI
- additional description
- adduct
- adduct deconvolution
- adduct ion
- adduct ion attribute
- adduct ion formula
- adduct ion isotope
- adduct ion mass
- adduct ion property
- adduct ion X m/z
- adiabatic ionization
- Agilent instrument model
- Agilent MassHunter format
- Agilent MassHunter nativeID format
- Agilent software
- ALEX
- ALEX123
- alpha-cleavage
- AltAC
- alternate mass
- alternate single letter codes
- alternating
- alternating polarity mode
- Amanda
- Amanda:AmandaScore
- amaZon ETD
- amaZon Speed
- amaZon Speed ETD
- amaZon X
- ambiguous residues
- amino acid
- aminoxyTMT quantitation analysis
- analog ion
- analog-digital converter
- analysis attribute
- analysis software
- Analyst
- analyte mixture members
- analyzer scan offset
- analyzer type
- anchor protein
- Andi-CHROM format
- Andi-MS format
- Andromeda
- Andromeda peptide PEP
- Andromeda result format
- Andromeda:apl file format
- Andromeda:PEP
- Andromeda:score
- ANOVA p-value
- ANOVA-test
- anti-aromatic ion
- Anubis
- apex IV
- apex Q
- apex ultra
- APEX value
- apexControl
- API 100
- API 100LC
- API 150EX
- API 150EX Prep
- API 165
- API 2000
- API 300
- API 3000
- API 3200
- API 350
- API 365
- API 4000
- API 5000
- appearance energy
- Applied Biosystems instrument model
- Applied Biosystems software
- area normalization
- area peak picking
- Arg-C
- aromatic ion
- array detector
- ASAPRatio
- Ascore
- Ascore software
- Ascore threshold
- ASN.1
- Asp-N
- Asp-N_ambic
- assay attribute
- assay label attribute
- assigned intensity fraction
- Associated file URI
- Associated raw file URI
- association reaction
- associative ionization
- ATAQS
- atmospheric pressure chemical ionization
- atmospheric pressure ionization
- atmospheric pressure matrix-assisted laser desorption ionization
- atmospheric pressure photoionization
- Atmostpheric Pressure Photoionization
- atom
- attenuation
- attribute coefficient of variation
- attribute maximum
- attribute mean
- attribute median
- attribute minimum
- attribute standard deviation
- attribute summary value
- Auto Spec Ultima NT
- autodetachment
- autoflex
- autoflex II
- autoflex II TOF/TOF
- autoflex III smartbeam
- autoflex III TOF/TOF smartbeam
- autoflex TOF/TOF
- autoionization
- AutoSpec Premier
- average m/z deviation
- average mass
- average product ion intensity
- axial ejection linear ion trap
- AXIMA Assurance Linear MALDI-TOF
- AXIMA CFR MALDI-TOF
- AXIMA Confidence MALDI-TOF
- AXIMA Performance MALDI-TOF/TOF
- AXIMA-CFR plus
- AXIMA-QIT
- base peak
- base peak intensity
- base peak m/z
- baseline
- baseline array
- baseline reduction
- BaselineFilter
- basepeak chromatogram
- beam-type collision-induced dissociation
- below precursor intensity dominance charge state calculation
- best replicate spectrum
- beta-cleavage
- binary data array
- binary data compression parameter
- binary data compression type
- binary data type
- BioAnalyst
- biological replicate
- BioTOF
- BioTOF II
- BioTOF III
- BioTOF-Q
- BioTools
- Bioworks
- Bioworks SRF format
- blackbody infrared radiative dissociation
- Bruker BAF format
- Bruker BAF nativeID format
- Bruker BAF nativeID format, combined spectra
- Bruker Container format
- Bruker Container nativeID format
- Bruker Daltonics amaZon series
- Bruker Daltonics apex series
- Bruker Daltonics BioTOF series
- Bruker Daltonics esquire series
- Bruker Daltonics EVOQ series
- Bruker Daltonics flex series
- Bruker Daltonics HCT Series
- Bruker Daltonics instrument model
- Bruker Daltonics maXis series
- Bruker Daltonics micrOTOF series
- Bruker Daltonics SCION series
- Bruker Daltonics solarix series
- Bruker Daltonics timsTOF series
- Bruker FID format
- Bruker FID nativeID format
- Bruker FID nativeID format, combined spectra
- Bruker software
- Bruker TDF format
- Bruker TDF nativeID format
- Bruker TDF nativeID format, combined spectra
- Bruker U2 format
- Bruker U2 nativeID format
- Bruker XML format
- Bruker/Agilent YEP format
- Bruker/Agilent YEP nativeID format
- Bruker/Agilent YEP nativeID format, combined spectra
- BSI software
- buffer gas
- Byonic
- Byonic: Peptide AbsLogProb
- Byonic: Peptide AbsLogProb2D
- Byonic: Protein AbsLogProb
- Byonic:Best LogProb
- Byonic:Best Score
- Byonic:Delta Score
- Byonic:DeltaMod Score
- Byonic:PEP
- Byonic:Peptide LogProb
- Byonic:Protein LogProb
- Byonic:Score
- c-terminal flanking residue
- Calculate Probability Scores
- calibration spectrum
- CAMERA
- cationized molecule
- CC
- centroid spectrum
- change log
- channeltron
- charge array
- charge deconvolution
- charge exchange ionization
- charge inversion mass spectrum
- charge inversion reaction
- charge permutation reaction
- charge state
- charge state calculation
- charge stripping
- charge stripping reaction
- charge transfer reaction
- charge-induced fragmentation
- charge-remote fragmentation
- chemi-ionization
- chemical formula
- chemical ionization
- chrom format
- ChromaTOF HRT software
- ChromaTOF software
- chromatogram
- chromatogram attribute
- chromatogram metric
- chromatogram title
- chromatogram type
- chromatograph file format
- chromatography
- chromatography duration
- chromatography separation
- chromosome name
- chromosome strand
- Chymotrypsin
- Citius HRT
- cleavage agent details
- cleavage agent name
- Cleavage agent regular expression
- CLINPROT
- CLINPROT micro
- CLINPROT robot
- ClinProTools
- Cliquid
- clustal aln
- cluster identifier
- cluster ion
- CNBr
- co-author
- co-eluting ion
- coated glass plate
- coefficient of variation
- Collision cell exit potential
- collision energy
- collision energy ramp end
- collision energy ramp start
- collision gas
- collision gas pressure
- collision quadrupole
- collision-induced dissociation
- collisional cross sectional area
- collisional excitation
- combined dissociation method
- combined FDRScore
- combined FDRScore for proteins
- combined ms-ms + spectral library search
- combined pmf + ms-ms search
- Comet
- Comet:deltacn
- Comet:deltacnstar
- Comet:expectation value
- Comet:matched ions
- Comet:sprank
- Comet:spscore
- Comet:total ions
- Comet:xcorr
- command-line parameters
- Comment
- common search engine input parameter
- common software input parameter
- compact
- Compass
- Compass for HCT/esquire
- Compass for micrOTOF
- Compass OpenAccess
- Compass Security Pack
- CompassXport
- CompassXtract
- completion time
- compound data type
- Compound Discoverer
- compound identification confidence code in MS-DIAL
- compound identification confidence level
- cone voltage
- confidence score
- confident distinct peptide sequences
- confident peptide qualification
- confident peptide sequence number
- Conflict
- consecutive reaction monitoring
- consecutive reaction monitoring
- consecutive reaction monitoring chromatogram
- consensus result
- consensus scoring
- consensus spectrum
- consensusXML
- constant
- constant neutral gain scan
- constant neutral gain spectrum
- constant neutral loss scan
- constant neutral loss spectrum
- constant neutral mass loss
- constituent identification file
- constituent library file
- constituent spectrum file
- contact address
- contact affiliation
- contact attribute
- contact email
- contact fax number
- contact name
- contact phone number
- contact role
- contact toll-free phone number
- contact URL
- continuous flow fast atom bombardment
- Conventional ion
- Conversion
- conversion dynode
- conversion dynode electron multiplier
- conversion dynode photomultiplier
- conversion software
- Conversion to dta
- Conversion to mzData
- Conversion to mzML
- Conversion to mzMLb
- Conversion to mzXML
- convex hull baseline reduction
- copyright notice
- count of identified clusters
- count of identified proteins
- counts per second
- counts reporting
- Cover
- CPTAC accession number
- Crc64
- CRM spectrum
- cross-link acceptor
- cross-link donor
- cross-link spectrum identification item
- cross-linked peptide ion interpretation format
- cross-linking attribute
- cross-linking result details
- cross-linking score
- cross-linking search
- crushed crystal MALDI sample preparation
- curator keyword
- custom unreleased software tool
- customization
- cyclotron
- cyclotron motion
- D-Score
- D-Score threshold
- dalton
- daly detector
- Data derived from previous dataset
- Data Explorer
- data file checksum type
- data file content
- data filtering
- data independent acquisition from dissociation of full mass range
- data independent acquisition from dissociation of full mass range after ion mobility separation
- data independent acquisition from dissociation of scanning quadrupole across mass range
- data independent acquisition from dissociation of sequential mass ranges
- data independent acquisition from dissociation of sequential mass ranges after ion mobility separation
- data processing action
- data processing parameter
- data processing software
- data processing start time
- data stored in database
- data transformation
- data-dependent acquisition
- data-independent acquisition
- DataAnalysis
- database EST
- database file formats
- database filtering
- database IPI_arabidopsis
- database IPI_chicken
- database IPI_cow
- database IPI_human
- database IPI_mouse
- database IPI_rat
- database IPI_zebrafish
- database local file path
- database name
- database nr
- database original uri
- database sequence details
- database source
- database type
- database type amino acid
- database type nucleotide
- database type spectral library
- database UniProtKB
- database UniProtKB/Swiss-Prot
- database UniProtKB/TrEMBL
- database version
- DatabaseDescription
- Dataset FTP location
- dataset submitter
- Dataset with its publication pending
- Dataset with no associated published manuscript
- date / time search performed
- DB accession filter string
- DB composition only decoy
- DB composition target+decoy
- DB filter on accession numbers
- DB filter on sequence pattern
- DB filter taxonomy
- DB MW filter
- DB MW filter maximum
- DB MW filter minimum
- DB PI filter
- DB PI filter maximum
- DB PI filter minimum
- DB sequence filter pattern
- DB source EBI
- DB source NCBI
- DB source UniProt
- DbDate
- DbDescription
- DBExporter
- DBImporter
- DbName
- DbSource
- DbUniqueId
- DbVersion
- de facto standard
- de novo search
- DeBunker
- DeBunker:score
- DeBunker:score threshold
- declustering potential
- deconvoluted inverse reduced ion mobility array
- deconvoluted ion mobility array
- deconvoluted ion mobility drift time array
- Decoy
- decoy DB accession regexp
- decoy DB derived from
- decoy DB details
- decoy DB from EST
- decoy DB from IPI_arabidopsis
- decoy DB from IPI_chicken
- decoy DB from IPI_cow
- decoy DB from IPI_human
- decoy DB from IPI_mouse
- decoy DB from IPI_rat
- decoy DB from IPI_zebrafish
- decoy DB from nr
- decoy DB from UniProtKB/Swiss-Prot
- decoy DB from UniProtKB/TrEMBL
- decoy DB generation algorithm
- decoy DB type randomized
- decoy DB type reverse
- decoy DB type shuffle
- decoy peptide
- decoy spectrum
- decoy SRM transition
- decreasing m/z scan
- deisotoping
- delayed extraction
- delta M
- delta m/z
- DELTA plusAdvantage
- DELTAplusXP
- demultiplexed spectrum
- denominator data type attribute
- Density
- deoxyribonucleotide
- desorption electrospray ionization
- desorption ionization
- desorption/ionization on silicon
- detector
- detector acquisition mode
- detector attribute
- detector potential
- detector resolution
- detector type
- DFS
- diagnostic ion
- DiART quantitation analysis
- DiART reagent
- DiART reagent 114
- DiART reagent 115
- DiART reagent 116
- DiART reagent 117
- DiART reagent 118
- DiART reagent 119
- Digital Object Identifier (DOI)
- DiLeu quantitation analysis
- DiLeu reagent
- DiLeu reagent 115
- DiLeu reagent 116
- DiLeu reagent 117
- DiLeu reagent 118
- dilution series, concentration X
- dimeric ion
- Dionex instrument model
- direct inlet
- direct insertion probe
- direct liquid introduction
- DirecTag
- Discoverer MSF format
- dissociation method
- dissociation of full mass range
- dissociation of scanning quadrupole across a specified mass range
- dissociation of sequential mass ranges
- dissociative ionization
- distinct peptide sequences
- distinct peptide-level combined FDRScore
- distinct peptide-level FDRScore
- distinct peptide-level q-value
- distonic ion
- distributed normalized spectral abundance factor
- DisulfideBond
- Domain
- domain range
- double-focusing mass spectrometer
- dpControl
- dried droplet MALDI matrix preparation
- DSQ
- DSQ II
- DTA format
- DTASelect
- DTASelect format
- Duration
- dwell time
- dye-laser
- dynamic mass spectrometry
- dynode
- e/2 mass spectrum
- eight sample run
- einzel lens
- electric field strength
- electromagnetic radiation chromatogram
- electromagnetic radiation spectrum
- electron affinity
- electron capture dissociation
- electron energy obsolete
- electron ionization
- electron multiplier
- electron multiplier tube
- electron transfer dissociation
- electron volt
- electron-induced excitation in organics
- electron-transfer/collision-induced dissociation
- electron-transfer/higher-energy collision dissociation
- Electronic Ionization
- electrospray inlet
- electrospray ionization
- electrospray supply type
- electrostatic energy analyzer
- Element 2
- Element GD
- Element XR
- ELEMENT2
- elution time
- embl em
- emission chromatogram
- emission spectrum
- emPAI value
- empirical formula
- Empower
- emulsion
- energy unit
- enhanced multiply charged spectrum
- enhanced resolution scan
- enium ion
- environment metric
- EPIFANY
- EPIFANY:Protein posterior probability
- error on absolute quantity
- error on peptide area
- error on peptide ratio
- error on protein ratio
- esquire 4000
- esquire 6000
- esquireControl
- EV
- even-electron ion
- EVOQ Elite
- EVOQ Qube
- exact mass
- Exactive
- Exactive Plus
- excludes supersede includes
- Expect value
- Experiment additional parameter
- experiment name
- experimental condition 'case'
- experimental condition 'control'
- experimental condition 'disease'
- experimental condition 'healthy'
- Experimental information has been refined since this experiment was originally made publicly available
- experimental precursor monoisotopic m/z
- explorer
- exponential
- external array length
- external HDF5 dataset
- external offset
- external reference data
- external reference identifier
- external reference keyword
- FAIMS compensation voltage
- false localization rate
- family member protein
- faraday cup
- fast atom bombardment ionization
- fast evaporation MALDI sample preparation
- fast ion bombardment
- FASTA format
- fastest frequency for MS level 1 collection
- fastest frequency for MS level 2 collection
- FDRScore
- FDRScore for proteins
- feature attribute
- feature format
- feature list attribute
- feature-level quantification datatype
- featureXML
- fed supply electrospray
- field desorption
- field ionization
- field-free region
- file format
- file format conversion
- FileConverter
- FileFilter
- FileMerger
- filter string
- final MS exponent
- final PSM list
- FindPairs
- Finnigan MAT instrument model
- first author
- first column elution time
- first stability region
- Fixed modification
- FlexAnalysis
- FlexControl
- flexImaging
- flow injection analysis
- flow rate array
- flow rate chromatogram
- flowing afterglow
- fluorescence detector
- focal plane array
- focal plane collector
- focus diameter x
- focus diameter y
- Formic_acid
- four sample run
- fourier transform ion cyclotron resonance mass spectrometer
- fraction identifier
- frag: a ion
- frag: a ion - H2O
- frag: a ion - NH3
- frag: b ion
- frag: b ion - H2O
- frag: b ion - NH3
- frag: c ion
- frag: c ion - H2O
- frag: c ion - NH3
- frag: d ion
- frag: immonium ion
- frag: internal ya ion
- frag: internal yb ion
- frag: isobaric label ion
- frag: iTRAQ 4plex reporter ion
- frag: iTRAQ 8plex reporter ion
- frag: precursor ion
- frag: precursor ion - H2O
- frag: precursor ion - NH3
- frag: TMT ETD reporter ion
- frag: TMT reporter ion
- frag: v ion
- frag: w ion
- frag: x ion
- frag: x ion - H2O
- frag: x ion - NH3
- frag: y ion
- frag: y ion - H2O
- frag: y ion - NH3
- frag: z ion
- frag: z ion - H2O
- frag: z ion - NH3
- frag: z+1 ion
- frag: z+2 ion
- fragment ion
- fragment mass type average
- fragment mass type mono
- fragment neutral loss
- fragmentation ion type
- fragmentation score
- free electron laser
- fringing field
- full scan
- full width at half-maximum
- gas chromatography separation
- gas laser
- gaseous sample state
- Gaussian smoothing
- GC IsoLink
- GC Quantum
- GCMS-QP2010SE
- GCT
- GCT Premier
- Gel image file URI
- gene name
- GeneralComment
- generic experimental condition
- Genespring MS
- GENOLINK
- genome reference version
- GenoTools
- global FLR
- glow discharge ionization
- glutamyl endopeptidase
- glycan ion interpretation format
- glyco-TMT quantitation analysis
- GName
- GO
- GPS Explorer
- Greazy
- greylag
- group member with undefined relationship OR ortholog protein
- group PSMs by sequence
- group PSMs by sequence with modifications
- group PSMs by sequence with modifications and charge
- group representative
- H-PINS retention time normalization standard
- H-Score
- H-Score threshold
- H2O neutral loss
- H3PO4 neutral loss
- HasAnnotationIdentifiers
- HCT
- HCTcontrol
- HCTplus
- HCTultra
- HCTultra ETD II
- HCTultra PTM
- heavy labeled peptidoform
- height peak picking
- heterolytic cleavage
- high energy collision
- high intensity data point removal
- high intensity threshold
- high-field asymmetric waveform ion mobility spectrometry
- higher energy beam-type collision-induced dissociation
- higher score better
- highest observed m/z
- highest observed wavelength
- HiRes ESI
- HiRes MALDI
- Hitachi instrument model
- homolytic cleavage
- hr-ms compound identification confidence level
- hybrid mass spectrometer
- hydrazideTMT quantitation analysis
- hydrogen/deuterium exchange
- HyStar
- i3tms
- ICAT heavy reagent
- ICAT light reagent
- ICAT reagent
- ICPL reagent
- ICPL reagent 0
- ICPL reagent 10
- ICPL reagent 4
- ICPL reagent 6
- ID
- ID based metric
- ID free metric
- identification attribute
- identification file attribute
- identification file format
- identification parameter
- IdentiPy
- IdentiPy:hyperscore
- IdentiPy:RHNS
- IdentityE Score
- IdentityE XML format
- idXML
- iMonDB
- impact
- impact angle
- impact HD
- impact II
- in-gel digestion
- in-solution digestion
- in-source collision-induced dissociation
- InChIKey
- includes supersede excludes
- inclusive high intensity threshold
- inclusive low intensity threshold
- increasing m/z scan
- inductive detector
- inductively coupled plasma
- infrared multiphoton dissociation
- infusion
- initiator methionine
- inlet attribute
- inlet temperature
- inlet type
- instrument
- instrument additional description
- instrument attribute
- instrument model
- instrument serial number
- instrument specific scan attribute
- instrument vendor
- intensity array
- intensity normalization
- intensity of precursor ion
- intensity unit
- interaction score derived from cross-linking
- interchannel delay
- intermediate analysis format
- intermediate PSM list
- internal peptide reference used
- internal protein reference used
- internal reference abundance
- InternalCalibration
- interpreted spectrum
- interpreted spectrum attribute
- inverse reduced ion mobility
- iodoTMT quantitation analysis
- ion
- ion chemical type
- ion current chromatogram
- ion desolvation
- ion energy loss spectrum
- ion injection time
- ion interpretation format
- ion kinetic energy spectrometry
- ion mobility array
- ion mobility attribute
- ion mobility deconvolution
- ion mobility drift time
- ion mobility separation
- ion mobility spectrometry
- ion optics
- ion optics attribute
- ion optics type
- ion property
- ion reaction
- ion role
- ion selection attribute
- ion series considered in search
- ion source metric
- ion stability type
- ion trap
- ion-pair formation
- ion-to-photon detector
- ion/molecule reaction
- ion/neutral complex
- ion/neutral species exchange reaction
- ion/neutral species reaction
- ion?
- ionization cross section
- ionization efficiency
- ionization efficiency
- ionization energy
- ionization mode
- ionization type
- ionizing collision
- ions series considered
- ions series considered in search
- IonSpec instrument model
- iProphet
- iProX dataset identifier
- iProX dataset URI
- IPTL quantitation analysis
- iRT retention time normalization standard
- ISB mzXML format
- isobaric label quantitation analysis
- IsobariQ
- isoelectric point
- isoform-level identification attribute
- isoform-level identification statistic
- isoform-level Q-value
- isolation width
- isolation window attribute
- isolation window full range
- isolation window lower limit
- isolation window lower offset
- isolation window target m/z
- isolation window upper limit
- isolation window upper offset
- isomer
- IsoPrime
- IsoProbe
- IsoProbe T
- isotope dilution mass spectrometry
- isotope ratio mass spectrometry
- isotopic fit score
- isotopic ion MS peak
- isotopic pattern area
- isotopologue
- Isotopologue ion
- isotopologue MS peak
- isotopomer
- isotopomer MS peak
- isotopomer peak
- Isotopomeric ion
- ISQ
- ITQ 1100
- ITQ 700
- ITQ 900
- iTRAQ quantitation analysis
- iTRAQ reagent
- iTRAQ reagent 113
- iTRAQ reagent 114
- iTRAQ reagent 115
- iTRAQ reagent 116
- iTRAQ reagent 117
- iTRAQ reagent 118
- iTRAQ reagent 119
- iTRAQ reagent 121
- ITRAQAnalyzer
- iTRAQH quantitation analysis
- jet separator
- journal article keyword
- jPOST dataset identifier
- jPOST dataset URI
- kinetic energy analyzer
- kinetic energy release distribution
- kinetic method
- KSDP score
- KW
- lab head
- lab personnel
- label free sample
- label-free peptide level quantitation
- label-free protein level quantitation
- label-free proteingroup level quantitation
- label-free raw feature quantitation
- laser
- laser attribute
- Laser Desorption
- laser desorption ionization
- laser type
- LC-MS feature intensity
- LC-MS feature volume
- LC-MS label-free quantitation analysis
- LCMS-2010A
- LCMS-2010EV
- LCMS-2020
- LCMS-8040
- LCMS-8045
- LCMS-8050
- LCMS-8060
- LCMS-9030
- LCMS-IT-TOF
- LCQ Advantage
- LCQ Classic
- LCQ Deca
- LCQ Deca XP Plus
- LCQ Fleet
- leading protein
- LECO instrument model
- LECO software
- Length
- leukocyte elastase
- Libra
- library analyte attribute set
- library attribute set name
- library creation log
- library creation software
- library description
- library entry
- library entry attribute
- library entry comment
- library entry index
- library entry key
- library format version
- library identifier
- library interpretation attribute set
- library name
- library provenance attribute
- library spectrum attribute set
- library URI
- library version
- license URI
- LIFT
- LightSight Software
- LIMSA
- linear
- linear ion trap
- linked scan
- linked scan at constant b/e
- Linked Scan at Constant B2/E
- Linked Scan at Constant B[1-(E/E0)]^1/2 / E
- Linked Scan at Constant E2/V
- Lipid Data Analyzer
- lipid ion interpretation format
- Lipid-Pro
- LipidBlast
- LipiDex
- LipidFinder
- LipidHunter
- LipidMatch
- lipidomics analysis software
- LipidQA
- LipidXplorer
- LIQUID
- liquid chromatography separation
- liquid sample state
- liquid secondary ionization
- list of floats
- list of integers
- list of strings
- list of type
- LOBSTAHS
- local FDR
- local FLR at threshold
- local retention time
- low energy collisions
- low intensity data point removal
- low intensity threshold
- low-energy collision-induced dissociation
- lower score better
- LOWESS smoothing
- lowest observed m/z
- lowest observed wavelength
- LPPtiger
- LTQ
- LTQ FT
- LTQ FT Ultra
- LTQ Orbitrap
- LTQ Orbitrap Classic
- LTQ Orbitrap Discovery
- LTQ Orbitrap Elite
- LTQ Orbitrap Velos
- LTQ Orbitrap Velos Pro
- LTQ Orbitrap XL
- LTQ Orbitrap XL ETD
- LTQ Velos
- LTQ Velos ETD
- LTQ XL
- LTQ XL ETD
- LXQ
- Lys-C
- Lys-C/P
- Lys-N
- LysargiNase
- M+H ion
- M-H ion
- m/z
- m/z array
- m/z calibration
- m/z Separation Method
- M@LDI L
- M@LDI LR
- magnetic deflection
- magnetic field strength
- magnetic sector
- MALDI LTQ Orbitrap
- MALDI LTQ XL
- MALDI matrix application
- MALDI Solutions
- MALDI Solutions LC-MALDI
- MALDI Solutions Microbial Identification
- maldi spot identifier
- MALDI Synapt G2 HDMS
- MALDI Synapt G2 MS
- MALDI Synapt G2-S HDMS
- MALDI Synapt G2-S MS
- MALDI SYNAPT G2-Si
- MALDI Synapt HDMS
- MALDI Synapt MS
- Maltcms
- manual validation
- MapAligner
- MapNormalizer
- marginally distinguished protein
- MaRiMba
- MaRiMba
- MarkerView Software
- Mascot
- Mascot DAT format
- Mascot Distiller
- Mascot input parameter
- Mascot Integra
- Mascot MGF format
- Mascot Parser
- Mascot query number
- Mascot:C13 counts
- Mascot:expectation value
- Mascot:homology threshold
- Mascot:identity threshold
- Mascot:IncludeErrorTolerantMatches
- Mascot:Instrument
- Mascot:IntegratedSpectralLibrarySearch
- Mascot:matched ions
- Mascot:MaxProteinHits
- Mascot:MinMSMSThreshold
- Mascot:MinNumSigUniqueSeqs
- Mascot:PreferredTaxonomy
- Mascot:ProteinGrouping
- Mascot:ProteinScoringMethod
- Mascot:PTM site assignment confidence
- Mascot:PTM site assignment confidence threshold
- Mascot:RequireBoldRed
- Mascot:score
- Mascot:ShowDecoyMatches
- Mascot:ShowHomologousProteinsWithSamePeptides
- Mascot:ShowHomologousProteinsWithSubsetOfPeptides
- Mascot:SigThreshold
- Mascot:SigThresholdType
- Mascot:total ions
- Mascot:use MudPIT scoring
- Mascot:UseUnigeneClustering
- mass analyzed ion kinetic energy spectrometry
- mass analyzer
- mass analyzer attribute
- mass analyzer type
- mass array
- mass defect
- mass limit
- mass number
- mass resolution
- mass resolving power
- mass resolving power
- mass scan
- mass selective axial ejection
- mass selective instability
- mass spectrograph obsolete
- mass spectrometer
- mass spectrometer file format
- mass spectrometry
- mass spectrometry acquisition method
- mass spectrometry acquisition method aspect
- mass spectrometry imaging
- mass spectrometry/mass spectrometry
- mass spectrum
- mass table options
- mass table source
- mass trace reporting: polygons
- mass trace reporting: rectangles
- mass type settings
- mass unit
- MassHunter BioConfirm
- MassHunter Data Acquisition
- MassHunter Easy Access
- MassHunter Mass Profiler
- MassHunter Metabolite ID
- MassHunter Qualitative Analysis
- MassHunter Quantitative Analysis
- MassIVE dataset identifier
- MassIVE dataset URI
- MassLynx
- massWolf
- MAT253
- MAT900XP
- MAT900XP Trap
- MAT95XP
- MAT95XP Trap
- mathieu stability diagram
- matrix
- matrix application type
- matrix solution
- matrix solution concentration
- matrix-assisted laser desorption ionization
- mattauch-herzog geometry
- mature protein
- Maui
- max fold change
- maXis
- maXis 4G
- maXis II
- MaxQuant
- MaxQuant protein group-level score
- MaxQuant-DIA PEP
- MaxQuant-DIA peptide PEP
- MaxQuant-DIA score
- MaxQuant:feature intensity
- MaxQuant:LFQ intensity
- MaxQuant:MS/MS count
- MaxQuant:P-site localization probability
- MaxQuant:P-site localization probability threshold
- MaxQuant:PEP
- MaxQuant:peptide counts (all)
- MaxQuant:peptide counts (razor+unique)
- MaxQuant:peptide counts (unique)
- MaxQuant:Phospho (STY) Probabilities
- MaxQuant:Phospho (STY) Probabilities threshold
- MaxQuant:Phospho (STY) Score Diffs
- MaxQuant:PTM Delta Score
- MaxQuant:PTM Delta Score threshold
- MaxQuant:PTM Score
- MaxQuant:PTM Score threshold
- MaxQuant:sequence length
- McLafferty Rearrangement
- MD-Score
- MD-Score threshold
- MD5
- mean
- mean charge array
- mean inverse reduced ion mobility array
- mean ion mobility array
- mean ion mobility drift time array
- mean of spectra
- measurement method
- median
- median baseline reduction
- median of spectra
- membrane inlet
- membrane separator
- merge of runs of 1D gel bands
- metabolic labeling 14N / 15N quantitation analysis
- metabolic labelling purity
- metabolic labelling: heavy N (mainly 15N)
- metabolic labelling: natural N (mainly 14N)
- metabolite
- MetaMorpheus
- MetaMorpheus:protein score
- MetaMorpheus:score
- metastable ion
- method file format
- METLIN
- MGF raw scans
- MGF scans
- microchannel plate detector
- microelectrospray
- microflex
- microflex II
- microflex LRF
- microflex LT
- Micromass PKL format
- Microsoft Excel
- micrOTOF
- micrOTOF II
- microTOF LC
- micrOTOF-Q
- micrOTOF-Q II
- micrOTOF-Q III
- micrOTOFcontrol
- MIDAS Workflow Designer
- minimum information standard
- minimum number of enzymatic termini
- minute
- modification index
- modification localization scoring
- modification motif
- modification parameters
- modification position score
- modification probability
- modification rescoring:false localization rate
- modification specificity peptide C-term
- modification specificity peptide N-term
- modification specificity protein C-term
- modification specificity protein N-term
- modification specificity rule
- modified nucleic acid sequence
- ModRes
- ModResPsi
- ModResUnimod
- modulation time
- molecular beam mass spectrometry
- molecular entity
- molecular entity attribute
- molecular entity property
- molecular formula
- molecular ion
- molecular mass
- molecule
- molecule taxonomy
- molecules per cell
- monoisotopic m/z deviation
- monoisotopic mass
- monosaccharide
- Morpheus
- Morpheus:Morpheus score
- Morpheus:summed Morpheus score
- moving average smoothing
- moving belt
- moving wire
- MRMaid
- MRMaid:peptide score
- MRMPilot Software
- MS Amanda csv format
- ms level
- MS metric
- MS run duration
- MS-DIAL
- MS-GF
- MS-GF+
- MS-GF:DeNovoScore
- MS-GF:Energy
- MS-GF:EValue
- MS-GF:PEP
- MS-GF:PepQValue
- MS-GF:QValue
- MS-GF:RawScore
- MS-GF:SpecEValue
- ms-ms search
- MS-Numpress linear prediction compression
- MS-Numpress linear prediction compression followed by zlib compression
- MS-Numpress positive integer compression
- MS-Numpress positive integer compression followed by zlib compression
- MS-Numpress short logged float compression
- MS-Numpress short logged float compression followed by zlib compression
- MS/MS in Space
- MS/MS in Time
- MS1 density quantiles
- MS1 feature area
- MS1 feature maximum intensity
- MS1 format
- MS1 label-based analysis
- MS1 label-based peptide level quantitation
- MS1 label-based protein level quantitation
- MS1 label-based proteingroup level quantitation
- MS1 label-based raw feature quantitation
- MS1 metric
- MS1 quarter RT fraction
- MS1 spectrum
- MS1 TIC quartile ratios
- MS1 TIC-change quartile ratios
- MS2 density quantiles
- MS2 format
- MS2 known precursor charges fractions
- MS2 metric
- MS2 quarter RT fraction
- MS2 tag-based analysis
- MS2 tag-based feature level quantitation
- MS2 tag-based peptide level quantitation
- MS2 tag-based protein level quantitation
- MS2 tag-based proteingroup level quantitation
- MS2 unknown and likely precursor charges fractions
- ms_deisotope
- msalign format
- MSDK
- MSFit:Mowse score
- MSFragger
- msmsEval quality
- MSn spectrum
- MSn-1 isolation window precursor purity
- MSnbase
- MSPathFinder
- MSPathFinder:EValue
- MSPathFinder:PepQValue
- MSPathFinder:QValue
- MSPathFinder:RawScore
- MSPathFinder:SpecEValue
- MSPepSearch:score
- msPrefix precursor recalculation
- MSQuant
- MSQuant:PTM-score
- MSQuant:PTM-score threshold
- multi-collector
- multidimensional chromatography modulation description
- multiphoton ionization
- multiple enzyme combination rules
- multiple ion monitoring
- multiple peak list nativeID format
- multiple peak list nativeID format, combined spectra
- multiple reaction monitoring
- multiple runs based metric
- multiple spectra based metric
- multiple stage mass spectrometry
- MultiQuant
- MyCompoundID
- MyriMatch
- MyriMatch:MVH
- MyriMatch:mzFidelity
- mz5 format
- mzIdentML format
- mzidLib
- mzidLib:CombineSearchEngines
- mzidLib:Csv2Mzid
- mzidLib:FalseDiscoveryRate
- mzidLib:InsertMetaDataFromFasta
- mzidLib:Mzidentml2Csv
- mzidLib:Omssa2Mzid
- mzidLib:Perform emPAI on mzid
- mzidLib:ProteoGrouper
- mzidLib:Tandem2Mzid
- mzidLib:Thresholder
- MZmine
- mzML format
- mzML unique identifier
- mzML unique identifier, combined spectra
- mzMLb format
- mzQC format
- mzQuantML format
- mzR
- MzStar
- mzTab
- MzWiff
- n-terminal flanking residue
- n-tuple
- NA sequence
- named element
- named element in mzIdentML
- named element in mzML
- nanoACQUITY UPLC
- nanoACQUITY UPLC System with 1D Technology
- nanoACQUITY UPLC with HDX Technology
- nanoelectrospray
- nanospray inlet
- native source path
- native spectrum identifier format
- native spectrum identifier format, combined spectra
- NBRF PIR
- NCBI *.p*
- NcbiTaxId
- negative electron transfer dissociation
- negative ion
- Negative Ion chemical ionization
- negative ion mode
- negative mode adduct ion
- negative scan
- neptune
- neutral loss
- neutral loss
- neutralization reionization mass spectrometry
- NG-5400
- NH3 neutral loss
- nier-johnson geometry
- NIST msp comment
- NIST MSP format
- NIST MSPepSearch
- nitrogen rule
- no cleavage
- no combination
- no compression
- No fixed modifications searched
- no modification threshold
- no nativeID format
- no peptide-level threshold
- no PSM threshold
- No PTMs are included in the dataset
- no special processing
- no threshold
- No variable modifications searched
- NoEnzyme
- noise array
- NoiseFilter
- nominal mass
- Non peer-reviewed dataset
- non-classical ion
- non-identified ion
- non-leading protein
- non-standard data array
- None ??
- normalization to mean of sum of all proteins
- normalized collision energy
- normalized peptide value
- normalized protein value
- normalized retention time
- normalized spectral abundance factor
- normalized XIC area
- Novor
- nth generation product ion
- nth generation product ion scan
- nth generation product ion spectrum
- nucleic acid
- nucleic acid base modification
- null-terminated ASCII string
- number of data points
- number of decoy sequences
- number of detector counts
- number of distinct protein sequences
- number of enzymatic termini
- number of mantissa bits truncated
- number of matched peaks
- number of missed cleavages
- number of molecular hypothesis considered
- number of MS1 spectra
- number of MS2 spectra
- number of peaks
- number of peaks submitted
- number of peaks used
- number of peptide seqs compared to each spectrum
- number of precursor ion observations
- number of product ion observations
- number of replicate spectra available
- number of replicate spectra used
- number of residues
- number of sequences searched
- number of spectra searched
- number of unmatched peaks
- NumberOfEntries
- numerator data type attribute
- numeric attribute
- object attribute
- observed spectrum
- OBSOLETE charge number
- odd-electron rule
- offset voltage
- OMEGA
- OMEGA-2001
- OmniFlex
- OMSSA
- OMSSA csv format
- OMSSA e-value threshold
- OMSSA input parameter
- OMSSA xml format
- OMSSA:evalue
- OMSSA:pvalue
- one sample run
- onium ion
- open split
- OpenMS file format
- OpenMS:Best PSM Score
- OpenMS:ConsensusID PEP
- OpenMS:LFQ intensity
- OpenMS:LFQ spectral count
- OpenMS:Target-decoy peptide q-value
- OpenMS:Target-decoy protein q-value
- OpenMS:Target-decoy PSM q-value
- OpenPepXL
- OpenPepXL:score
- OpenXQuest
- OpenXQuest:combined score
- OpenXQuest:intsum
- OpenXQuest:match-odds
- OpenXQuest:wTIC
- OpenXQuest:xcorr common
- OpenXQuest:xcorr xlink
- OptionalTagDef
- orbitrap
- Orbitrap Eclipse
- Orbitrap Exploris 120
- Orbitrap Exploris 240
- Orbitrap Exploris 480
- Orbitrap Fusion
- Orbitrap Fusion ETD
- Orbitrap Fusion Lumos
- Orbitrap ID-X
- Original data
- original nucleic acid sequence
- orthogonal extraction
- Other type file URI
- Outlier
- overlayer MALDI sample preparation
- p-value
- p-value
- p-value (protein diff from 1 randomly)
- PAnalyzer
- PAnalyzer:ambiguous group member
- PAnalyzer:conclusive protein
- PAnalyzer:indistinguishable protein
- PAnalyzer:non-conclusive protein
- Panorama Public dataset identifier
- Panorama Public dataset URI
- paper spray ionization
- Paragon input parameter
- Paragon: background correction
- Paragon: bias correction
- Paragon: channel to use as denominator in ratios
- Paragon: cysteine alkylation
- Paragon: digestion
- Paragon: FDR analysis
- Paragon: ID focus
- Paragon: instrument setting
- Paragon: modified data dictionary or parameter translation
- Paragon: quantitation
- Paragon: sample type
- Paragon: search effort
- Paragon:confidence
- Paragon:contrib
- Paragon:expression change p-value
- Paragon:expression error factor
- Paragon:score
- Paragon:special factor
- Paragon:total protscore
- Paragon:unused protscore
- param: a ion
- param: a ion-H2O DEPRECATED
- param: a ion-NH3 DEPRECATED
- param: b ion
- param: b ion-H2O DEPRECATED
- param: b ion-H3PO4 DEPRECATED
- param: b ion-NH3 DEPRECATED
- param: c ion
- param: d ion
- param: immonium ion
- param: internal ya ion
- param: internal yb ion
- param: v ion
- param: w ion
- param: x ion
- param: y ion
- param: y ion-H2O DEPRECATED
- param: y ion-H3PO4 DEPRECATED
- param: y ion-NH3 DEPRECATED
- param: z ion
- param: z+1 ion
- param: z+2 ion
- parameter file
- parent mass type average
- parent mass type mono
- partial charge transfer reaction
- particle beam
- PASSEL experiment URI
- PASSEL transition group browser URI
- PatternLab
- paul ion trap
- PDA spectrum
- PE
- peak
- peak area
- peak intensity
- peak intensity
- peak intensity rank
- peak intensity transform
- Peak list file URI
- peak list raw scans
- peak list scans
- peak picking
- peak targeting suitability rank
- PeakForest
- PeakPicker
- PEAKS Node
- PEAKS Online
- PEAKS Studio
- PEAKS:inChorusPeptideScore
- PEAKS:inChorusProteinScore
- PEAKS:peptideScore
- PEAKS:proteinScore
- Peer-reviewed dataset
- PEFF CV term
- PEFF file header section term
- PEFF file sequence entry term
- PEFF format
- PEFF molecule processing keyword
- Pegasus
- Pegasus 4D
- Pegasus BT
- Pegasus HRT
- Pegasus III
- penning ionization
- pep:FDR threshold
- PepFinder
- Pepitome
- PepNovo
- PepsinA
- peptide
- peptide accession number
- peptide attribute
- peptide attribute calculation software
- peptide consensus attribute
- peptide consensus list attribute
- peptide consensus m/z
- peptide consensus RT
- peptide descriptions
- peptide end on chromosome
- peptide exon count
- peptide exon nucleotide sizes
- peptide group ID
- peptide ion interpretation format
- peptide ion-level spectral count
- peptide level score
- peptide modification details
- peptide passes threshold
- peptide ratio
- peptide raw area
- peptide sequence-level e-value
- peptide sequence-level global confidence
- peptide sequence-level global FDR
- peptide sequence-level global FNR
- peptide sequence-level identification attribute
- peptide sequence-level identification statistic
- peptide sequence-level local FDR
- peptide sequence-level p-value
- peptide sequence-level probability
- peptide sequence-level result list attribute
- peptide sequence-level result list statistic
- peptide shared in multiple proteins
- peptide sharing details
- peptide spectrum match scoring algorithm
- peptide start on chromosome
- peptide start positions on chromosome
- peptide unique to one protein
- peptide-level quantification datatype
- peptide-level scoring
- peptide-level spectral count
- peptide-level statistical threshold
- peptide-to-protein mapping
- peptide-to-protein mapping attribute
- peptide:Ascore
- peptide:D-Score
- peptide:H-Score
- peptide:MD-Score
- peptide:phosphoRS score
- PeptideAtlas dataset URI
- PeptideProphet
- PeptideShaker
- PeptideShaker peptide confidence
- PeptideShaker peptide confidence type
- PeptideShaker peptide score
- PeptideShaker protein confidence type
- PeptideShaker protein group confidence
- PeptideShaker protein group score
- PeptideShaker PSM confidence
- PeptideShaker PSM confidence type
- PeptideShaker PSM score
- PeptideShaker PTM confidence type
- peptidoform
- peptidoform attribute
- peptidoform group label
- peptidoform ion
- peptidoform ion property
- peptidoform labeling state
- peptidoform sequence
- pepXML format
- percent collision energy ramp end
- percent collision energy ramp start
- percent of base peak
- percent of base peak times 100
- Percolator
- Percolator input parameter
- Percolator:features
- percolator:PEP
- percolator:Q value
- percolator:score
- Percolator:Validation based on
- PerSeptive PKS format
- pFind
- Phenyx
- Phenyx input parameter
- Phenyx XML format
- Phenyx:AC
- Phenyx:AC Score
- Phenyx:Auto
- Phenyx:Conflict Resolution
- Phenyx:Default Parent Charge
- Phenyx:ID
- Phenyx:Instrument Type
- Phenyx:MaxPepPvalue
- Phenyx:MinPepLength
- Phenyx:MinPepzscore
- Phenyx:Modif
- Phenyx:NumberOfMC
- Phenyx:PepPvalue
- Phenyx:Peptides1
- Phenyx:Peptides2
- Phenyx:Pepzscore
- Phenyx:Score
- Phenyx:Scoring Model
- Phenyx:Trust Parent Charge
- Phenyx:Turbo
- Phenyx:Turbo:Coverage
- Phenyx:Turbo:ErrorTol
- Phenyx:Turbo:Series
- Phenyx:User
- Philosopher
- phosphoRS score
- phosphoRS score threshold
- phosphoRS sequence probability
- phosphoRS site probability
- phosphoRS site probability threshold
- photodiode array detector
- photodissociation
- photoionization
- photomultiplier
- PIA
- PIA workflow parameter
- PIA XML format
- PIA:Combined FDRScore calculated
- PIA:FDRScore calculated
- PIA:filter
- PIA:protein inference
- PIA:protein inference filter
- PIA:protein inference scoring
- PIA:protein inference used PSMs
- PIA:protein inference used score
- PIA:protein score
- PIA:PSM sets created
- PIA:used top identifications for FDR
- PinPoint
- plasma desorption
- plasma desorption ionization
- Platform ICP
- pmf search
- PName
- pNovo
- point collector
- PolarisQ
- polarity
- polysaccharide
- PolyTools
- positive ion
- positive ion mode
- positive mode adduct ion
- positive scan
- possible charge state
- post-source decay
- postacceleration detector
- postprocessing software
- pre-ionization state
- precoated MALDI sample plate
- precursor activation
- precursor activation attribute
- precursor apex intensity
- precursor ion
- precursor ion detection probability
- precursor ion scan
- precursor ion spectrum
- precursor neutral loss
- precursor recalculation
- precursor shift decoy spectrum
- predicted isoelectric point
- predicted retention time
- predicted spectrum
- Prefix
- preprocessing software
- preset scan configuration
- pressure array
- pressure chromatogram
- previous MSn-1 scan precursor intensity
- PRIDE Converter2
- PRIDE experiment URI
- PRIDE project URI
- PRIDE XML
- principal ion
- printed MALDI matrix preparation
- Pro BLAST
- Pro ICAT
- Pro ID
- Pro Quant
- probability for proteins
- Processed
- processed data file
- ProCon
- product background
- product interpretation rank
- product ion
- product ion attribute
- product ion detection probability
- product ion drift time
- product ion intensity
- product ion intensity standard deviation
- product ion m/z
- product ion m/z delta
- product ion m/z error
- product ion mobility
- product ion scan
- product ion series ordinal
- product ion spectrum
- profile spectrum
- ProfileAnalysis
- proforma peptidoform sequence
- Profound:Cluster
- Profound:ClusterRank
- Profound:z value
- Progenesis automatic alignment
- Progenesis LC-MS
- Progenesis manual alignment
- Progenesis MetaScope score
- Progenesis normalization
- Progenesis QI
- Progenesis QI normalised abundance
- Progenesis:confidence score
- Progenesis:feature intensity
- Progenesis:peptide count
- Progenesis:peptide normalised abundance
- Progenesis:peptide raw abundance
- Progenesis:protein group normalised abundance
- Progenesis:protein group raw abundance
- Progenesis:protein normalised abundance
- Progenesis:protein raw abundance
- progeny ion
- programmer
- prolate traochoidal mass spectrometer
- Proline
- proline endopeptidase
- ProLuCID
- ProLuCID:deltacn
- ProLuCID:xcorr
- propeptide
- proportional
- ProSight
- ProSight input parameter
- ProSight:isoform Q-value
- ProSight:protein Q-value
- ProSight:proteoform Q-value
- ProSight:Run Annotated Proteoform Search mode
- ProSight:Run delta m mode
- ProSight:Run Subsequence Search mode
- ProSight:spectral C-score
- ProSight:spectral E-value
- ProSight:spectral P-score
- ProSight:spectral Q-value
- prot:FDR threshold
- protein
- protein accession
- protein ambiguity group result details
- protein attribute
- protein cluster identification attribute
- protein description
- protein detection statistical threshold
- protein group attribute
- protein group list attribute
- protein group or subset relationship
- protein group passes threshold
- protein group-level combined FDRScore
- protein group-level confidence
- protein group-level e-value
- protein group-level FDRScore
- protein group-level global FDR
- protein group-level global FNR
- protein group-level identification attribute
- protein group-level identification statistic
- protein group-level local FDR
- protein group-level p-value
- protein group-level probability
- protein group-level q-value
- protein group-level quantification datatype
- protein group-level result list attribute
- protein group-level result list statistic
- protein group-level statistical threshold
- protein identification confidence metric
- protein inference confidence category
- protein level PSM counts
- protein list attribute
- protein modifications
- protein name
- protein rank
- protein ratio
- protein sequence offset
- protein short name
- protein value: mean of peptide ratios
- protein value: median of peptide ratios
- protein value: sum of peptide values
- protein-level e-value
- protein-level global FDR
- protein-level identification attribute
- protein-level local FDR
- protein-level p-value
- protein-level q-value
- protein-level quantification datatype
- protein-level result list attribute
- protein-level result list statistic
- protein-level statistical threshold
- protein-pair-level global FDR
- PROTEINEER
- PROTEINEER dp
- PROTEINEER fc
- PROTEINEER spII
- PROTEINEER-LC
- ProteinExtractor
- ProteinExtractor input parameter
- ProteinExtractor:GenerateNonRedundant
- ProteinExtractor:IncludeIdentified
- ProteinExtractor:MascotPeptideScoreThreshold
- ProteinExtractor:MascotUniqueScore
- ProteinExtractor:MascotUseIdentityScore
- ProteinExtractor:MascotWeighting
- ProteinExtractor:MaxNumberOfProteins
- ProteinExtractor:MaxProteinMass
- ProteinExtractor:Methodname
- ProteinExtractor:MinNumberOfPeptides
- ProteinExtractor:PhenyxPeptideScoreThreshold
- ProteinExtractor:PhenyxUniqueScore
- ProteinExtractor:PhenyxWeighting
- ProteinExtractor:ProteinSolverPeptideScoreThreshold
- ProteinExtractor:ProteinSolverUniqueScore
- ProteinExtractor:ProteinSolverWeighting
- ProteinExtractor:Score
- ProteinExtractor:SequestPeptideScoreThreshold
- ProteinExtractor:SequestUniqueScore
- ProteinExtractor:SequestWeighting
- ProteinExtractor:UseMascot
- ProteinExtractor:UsePhenyx
- ProteinExtractor:UseProteinSolver
- ProteinExtractor:UseSequest
- ProteinExtractor:Weighting
- ProteinLynx Global Server
- ProteinLynx Global Server mass spectrum XML format
- ProteinLynx XML format
- ProteinLynx:Ladder Score
- ProteinLynx:Log Likelihood
- ProteinPilot Software
- ProteinProphet
- ProteinProphet:peptide group weight
- ProteinProphet:peptide weight
- ProteinProspector
- ProteinProspector:expectation value
- ProteinProspector:score
- ProteinScape
- ProteinScape Gel
- ProteinScape input parameter
- ProteinScape SearchEvent
- Proteinscape spectra
- ProteinScape:IntensityCoverage
- ProteinScape:PFFSolverExp
- ProteinScape:PFFSolverScore
- ProteinScape:ProfoundProbability
- ProteinScape:SearchEventId
- ProteinScape:SearchResultId
- ProteinScape:second round Mascot
- ProteinScape:second round Phenyx
- ProteinScape:SequestMetaScore
- Proteios
- ProteoAnnotator:count alternative peptides
- ProteoAnnotator:non-canonical gene model score
- Proteoform
- proteoform-level global FDR
- proteoform-level global FDR threshold
- proteoform-level identification attribute
- proteoform-level identification statistic
- proteoform-level local FDR
- proteoform-level local FDR threshold
- proteoform-level Q-value
- proteoform-level statistical threshold
- ProteoformDb
- proteogenomics attribute
- proteogenomics search
- ProteoGrouper:PAG score
- ProteoGrouper:PDH score
- Proteome Discoverer
- ProteomeCentral dataset URI
- ProteomeDiscoverer input parameter
- ProteomeDiscoverer:1. Dynamic Modification
- ProteomeDiscoverer:1. Static Modification
- ProteomeDiscoverer:1. Static Terminal Modification
- ProteomeDiscoverer:2. Dynamic Modification
- ProteomeDiscoverer:2. Static Modification
- ProteomeDiscoverer:3. Dynamic Modification
- ProteomeDiscoverer:3. Static Modification
- ProteomeDiscoverer:4. Dynamic Modification
- ProteomeDiscoverer:5. Dynamic Modification
- ProteomeDiscoverer:Absolute XCorr Threshold
- ProteomeDiscoverer:Activation Type
- ProteomeDiscoverer:Amanda:high confidence threshold
- ProteomeDiscoverer:Amanda:middle confidence threshold
- ProteomeDiscoverer:automatic workload
- ProteomeDiscoverer:Default FDR calculator
- ProteomeDiscoverer:Delta Score
- ProteomeDiscoverer:Dynamic Modification
- ProteomeDiscoverer:Enzyme Name
- ProteomeDiscoverer:Fragment Mass Tolerance
- ProteomeDiscoverer:Highest Charge State
- ProteomeDiscoverer:Initial minimal peptide probability
- ProteomeDiscoverer:ion settings
- ProteomeDiscoverer:Lowest Charge State
- ProteomeDiscoverer:Mascot:Decoy Search
- ProteomeDiscoverer:Mascot:Error tolerant Search
- ProteomeDiscoverer:Mascot:Mascot Server URL
- ProteomeDiscoverer:Mascot:Max MGF File Size
- ProteomeDiscoverer:Mascot:Number of attempts to submit the search
- ProteomeDiscoverer:Mascot:Peptide CutOff Score
- ProteomeDiscoverer:Mascot:Please Do not Touch this
- ProteomeDiscoverer:Mascot:Protein CutOff Score
- ProteomeDiscoverer:Mascot:Protein Relevance Factor
- ProteomeDiscoverer:Mascot:Significance High
- ProteomeDiscoverer:Mascot:Significance Middle
- ProteomeDiscoverer:Mascot:Taxonomy
- ProteomeDiscoverer:Mascot:Time interval between attempts to submit a search
- ProteomeDiscoverer:Mascot:User Name
- ProteomeDiscoverer:Mascot:Weight of A Ions
- ProteomeDiscoverer:Mascot:Weight of B Ions
- ProteomeDiscoverer:Mascot:Weight of C Ions
- ProteomeDiscoverer:Mascot:Weight of D Ions
- ProteomeDiscoverer:Mascot:Weight of V Ions
- ProteomeDiscoverer:Mascot:Weight of W Ions
- ProteomeDiscoverer:Mascot:Weight of X Ions
- ProteomeDiscoverer:Mascot:Weight of Y Ions
- ProteomeDiscoverer:Mascot:Weight of Z Ions
- ProteomeDiscoverer:Mascot:X Static Modification
- ProteomeDiscoverer:Mass Analyzer
- ProteomeDiscoverer:max differential modifications
- ProteomeDiscoverer:max equal modifications
- ProteomeDiscoverer:Max Modifications Per Peptide
- ProteomeDiscoverer:max number neutral loss
- ProteomeDiscoverer:max number neutral loss modifications
- ProteomeDiscoverer:max number of same modifs
- ProteomeDiscoverer:max peptide length
- ProteomeDiscoverer:Max Precursor Mass
- ProteomeDiscoverer:Maximum Delta Cn
- ProteomeDiscoverer:Maximum Missed Cleavage Sites
- ProteomeDiscoverer:Maximum Peptides Output
- ProteomeDiscoverer:Maximum Protein References Per Peptide
- ProteomeDiscoverer:min peptide length
- ProteomeDiscoverer:Min Precursor Mass
- ProteomeDiscoverer:Minimal peptide probability
- ProteomeDiscoverer:Minimal peptide weight
- ProteomeDiscoverer:MS Order
- ProteomeDiscoverer:Non-Fragment Filter:Mass Window Offset
- ProteomeDiscoverer:Non-Fragment Filter:Maximum Neutral Loss Mass
- ProteomeDiscoverer:Non-Fragment Filter:Remove Charge Reduced Precursor
- ProteomeDiscoverer:Non-Fragment Filter:Remove Neutral Loss Peaks
- ProteomeDiscoverer:Non-Fragment Filter:Remove Only Known Masses
- ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Overtones
- ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Peak
- ProteomeDiscoverer:Number of input1 spectra
- ProteomeDiscoverer:Number of input2 spectra
- ProteomeDiscoverer:Number of input3 spectra
- ProteomeDiscoverer:Number of input4 spectra
- ProteomeDiscoverer:Number of input5 spectra
- ProteomeDiscoverer:Number of predicted correct proteins
- ProteomeDiscoverer:Number of Spectra Processed At Once
- ProteomeDiscoverer:Organism
- ProteomeDiscoverer:Peptide CTerminus
- ProteomeDiscoverer:Peptide NTerminus
- ProteomeDiscoverer:Peptide Without Protein Cut Off Score
- ProteomeDiscoverer:Peptide Without Protein XCorr Threshold
- ProteomeDiscoverer:perform deisotoping
- ProteomeDiscoverer:Polarity Mode
- ProteomeDiscoverer:Precursor Mass Tolerance
- ProteomeDiscoverer:Protein Database
- ProteomeDiscoverer:Protein Relevance Threshold
- ProteomeDiscoverer:Reference Database
- ProteomeDiscoverer:Relaxed Score Threshold
- ProteomeDiscoverer:Reporter Ions Quantizer:Integration Method
- ProteomeDiscoverer:Reporter Ions Quantizer:Integration Window Tolerance
- ProteomeDiscoverer:Reporter Ions Quantizer:Quantitation Method
- ProteomeDiscoverer:Residue substitution list
- ProteomeDiscoverer:Scan Type
- ProteomeDiscoverer:Search Against Decoy Database
- ProteomeDiscoverer:Search Modifications Only For Identified Proteins
- ProteomeDiscoverer:SEQUEST:Calculate Probability Score
- ProteomeDiscoverer:SEQUEST:CTerminal Modification
- ProteomeDiscoverer:SEQUEST:Fragment Ion Cutoff Percentage
- ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge1
- ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge2
- ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge3
- ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge4
- ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge1
- ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge2
- ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge3
- ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge4
- ProteomeDiscoverer:SEQUEST:Low resolution spectra contained
- ProteomeDiscoverer:SEQUEST:Max Identical Modifications Per Peptide
- ProteomeDiscoverer:SEQUEST:Maximum Peptides Considered
- ProteomeDiscoverer:SEQUEST:NTerminal Modification
- ProteomeDiscoverer:SEQUEST:Peptide Relevance Factor
- ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge1
- ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge2
- ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge3
- ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge4
- ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge1
- ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge2
- ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge3
- ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge4
- ProteomeDiscoverer:SEQUEST:Use Average Fragment Masses
- ProteomeDiscoverer:SEQUEST:Weight of a Ions
- ProteomeDiscoverer:SEQUEST:Weight of b Ions
- ProteomeDiscoverer:SEQUEST:Weight of c Ions
- ProteomeDiscoverer:SEQUEST:Weight of d Ions
- ProteomeDiscoverer:SEQUEST:Weight of v Ions
- ProteomeDiscoverer:SEQUEST:Weight of w Ions
- ProteomeDiscoverer:SEQUEST:Weight of x Ions
- ProteomeDiscoverer:SEQUEST:Weight of y Ions
- ProteomeDiscoverer:SEQUEST:Weight of z Ions
- ProteomeDiscoverer:SN Threshold
- ProteomeDiscoverer:Source file extension
- ProteomeDiscoverer:Source Files
- ProteomeDiscoverer:Source Files old
- ProteomeDiscoverer:Spectrum Exporter:Export Format
- ProteomeDiscoverer:Spectrum Exporter:File name
- ProteomeDiscoverer:Spectrum Files:Raw File names
- ProteomeDiscoverer:Spectrum Grouper:Allow Mass Analyzer Mismatch
- ProteomeDiscoverer:Spectrum Grouper:Allow MS Order Mismatch
- ProteomeDiscoverer:Spectrum Grouper:Max RT Difference
- ProteomeDiscoverer:Spectrum Grouper:Precursor Mass Criterion
- ProteomeDiscoverer:Spectrum Score Filter:Let Pass Above Scores
- ProteomeDiscoverer:Spectrum Selector:Ionization Source
- ProteomeDiscoverer:Spectrum Selector:Lower RT Limit
- ProteomeDiscoverer:Spectrum Selector:Minimum Peak Count
- ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range After
- ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range Before
- ProteomeDiscoverer:Spectrum Selector:Precursor Selection
- ProteomeDiscoverer:Spectrum Selector:SN Threshold FTonly
- ProteomeDiscoverer:Spectrum Selector:Total Intensity Threshold
- ProteomeDiscoverer:Spectrum Selector:Unrecognized Activation Type Replacements
- ProteomeDiscoverer:Spectrum Selector:Unrecognized Charge Replacements
- ProteomeDiscoverer:Spectrum Selector:Unrecognized Mass Analyzer Replacements
- ProteomeDiscoverer:Spectrum Selector:Unrecognized MS Order Replacements
- ProteomeDiscoverer:Spectrum Selector:Unrecognized Polarity Replacements
- ProteomeDiscoverer:Spectrum Selector:Upper RT Limit
- ProteomeDiscoverer:Spectrum Selector:Use New Precursor Reevaluation
- ProteomeDiscoverer:SRF File Selector:SRF File Path
- ProteomeDiscoverer:Static Modification
- ProteomeDiscoverer:Static Modification for X
- ProteomeDiscoverer:Strict Score Threshold
- ProteomeDiscoverer:Target FDR Relaxed
- ProteomeDiscoverer:Target FDR Strict
- ProteomeDiscoverer:Use Average Precursor Mass
- ProteomeDiscoverer:use flanking ions
- ProteomeDiscoverer:Use Neutral Loss a Ions
- ProteomeDiscoverer:Use Neutral Loss b Ions
- ProteomeDiscoverer:Use Neutral Loss y Ions
- ProteomeDiscoverer:Use Neutral Loss z Ions
- ProteomeDiscoverer:WinCyg reference database
- ProteomeDiscoverer:WinCyg source files
- ProteomeDiscoverer:Xtract:Highest Charge
- ProteomeDiscoverer:Xtract:Highest MZ
- ProteomeDiscoverer:Xtract:Lowest Charge
- ProteomeDiscoverer:Xtract:Lowest MZ
- ProteomeDiscoverer:Xtract:Monoisotopic Mass Only
- ProteomeDiscoverer:Xtract:Overlapping Remainder
- ProteomeDiscoverer:Xtract:Required Fitting Accuracy
- ProteomeDiscoverer:Xtract:Resolution At 400
- ProteomeDiscoverer:ZCore:Protein Score Cutoff
- ProteomeXchange accession number
- ProteomeXchange accession number version number
- ProteomeXchange dataset identifier reanalysis number
- ProteomeXchange project tag
- proteomics solution 1
- Proteomics Standards Initiative Mass Spectrometry Vocabularies
- ProteoSuite
- ProteoWizard chainsaw
- ProteoWizard idconvert
- ProteoWizard msaccess
- ProteoWizard msconvert
- ProteoWizard SeeMS
- ProteoWizard software
- proton affinity
- proton transfer charge reduction
- proton transfer reaction
- protonated molecule
- protXML format
- PSI mzData format
- PSI-MS CV Quality Control Vocabulary
- PSM is used for peptide-level scoring
- PSM-level attribute
- PSM-level combined FDRScore
- PSM-level e-value
- PSM-level FDRScore
- PSM-level global confidence
- PSM-level global FDR
- PSM-level global FNR
- PSM-level identification statistic
- PSM-level local FDR
- PSM-level p-value
- PSM-level probability
- PSM-level q-value
- PSM-level quantification datatype
- PSM-level result list attribute
- PSM-level result list statistic
- PSM-level search engine specific statistic
- PSM-level statistical threshold
- PSM:FDR threshold
- PTM localization attribute
- PTM localization confidence metric
- PTM localization distinct peptide-level statistic
- PTM localization PSM-level statistic
- PTM localization result list statistic
- PTM localization score threshold
- PTM localization single result statistic
- PTM scoring algorithm version
- PTMProphet
- PTMProphet information content
- PTMProphet mean best probability
- PTMProphet normalized information content
- PTMProphet probability
- PTX-QC
- PubMed identifier
- pulse counting
- pulse duration
- pulse energy
- pulsed q dissociation
- PureDisk
- purgatory
- pymzML
- pyrolysis mass spectrometry
- pyteomics
- python-psims
- Q Exactive
- Q Exactive HF
- Q Exactive HF-X
- Q Exactive Plus
- Q Exactive UHMR
- Q TRAP
- Q-Tof micro
- Q-Tof Premier
- Q-Tof Ultima
- QC metric
- QC metric category
- QC metric value type
- QSTAR
- QSTAR Elite
- QSTAR Pulsar
- QSTAR XL
- QTRAP 4500
- QTRAP 5500
- QTRAP 6500
- QTRAP 6500+
- quadratic
- quadrupole
- quadrupole ion trap
- quality control data format
- quality estimation by manual validation
- quality estimation method details
- quality estimation with decoy database
- quality estimation with implicite decoy sequences
- QuaMeter IDFree
- QuantAnalysis
- quantification based metric
- quantification data processing
- quantification datatype
- quantification file format
- quantification information
- quantification object attribute
- quantile normalization, peptides
- quantile normalization, proteins
- quantitation analysis summary
- quantitation software comment or customizations
- quantitation software name
- quantitation software version
- quattro micro
- Quattro micro GC
- Quattro Ultima
- quick and dirty MALDI sample preparation
- QUIN-XL
- quistor
- radial ejection linear ion trap
- radical ion
- rank transform
- rapifleX
- ratio calculation method
- raw data file
- raw file attribute
- raw files group attribute
- raw inverse reduced ion mobility array
- raw ion mobility array
- raw ion mobility drift time array
- razor peptide
- ReAdW
- Reference
- reference ion
- reflectron
- reflectron off
- reflectron on
- reflectron state
- regular expression
- regular expression for a digital object identifier (DOI)
- regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment
- Regular expression for adduct ion formula
- regular expression for interaction scores derived from cross-linking
- regular expression for modification localization scoring
- regular expression for PEFF molecular sequence type
- regular expression for PEFF sequence status
- regular expressions for a GUID
- release date
- report only spectra assigned to identified proteins
- reporter ion intensity
- reporter ion normalized value
- reporter ion raw value
- Reprocessed complete dataset
- Reprocessed subset dataset
- Resampler
- researcher
- reservoir
- residual gas analyzer
- residue-pair-level global FDR
- resolution array
- resolution measurement method
- resolution type
- resonance enhanced multiphoton ionization
- resonance ion ejection
- Result file URI
- result list attribute
- retention time
- retention time alignment
- retention time metric
- retention time normalization standard
- retention time window attribute
- retention time window lower offset
- retention time window upper offset
- retention time window width
- retention time(s)
- ribonucleotide
- role type
- run attribute
- S-lens voltage
- sample
- sample attribute
- sample batch
- sample concentration
- sample label
- sample mass
- sample name
- sample number
- sample plate
- sample plate type
- sample pre-fractionation
- sample preparation
- sample preparation metric
- sample state
- sample volume
- sampled noise baseline array
- sampled noise intensity array
- sampled noise m/z array
- sampling frequency
- sandwich MALDI sample preparation
- Savitzky-Golay smoothing
- Scaffold
- Scaffold input parameter
- Scaffold nativeID format
- Scaffold: Minimum Peptide Count
- Scaffold: Minimum Peptide Probability
- Scaffold: Minimum Protein Probability
- Scaffold:Peptide Probability
- Scaffold:Protein Probability
- scan
- scan attribute
- scan direction
- Scan Function
- scan law
- scan m/z range?
- scan mode
- scan number
- scan number only nativeID format
- scan number only nativeID format, combined spectra
- scan number(s)
- scan polarity
- scan rate
- scan start time
- scan window lower limit
- scan window upper limit
- scanning method
- scanning quadrupole position lower bound m/z array
- scanning quadrupole position upper bound m/z array
- SCIEX API III format
- SCIEX instrument model
- SCIEX software
- SCIEX TOF/TOF database
- SCIEX TOF/TOF nativeID format
- SCIEX TOF/TOF Series Explorer Software
- SCIEX TOF/TOF T2D format
- SCIEX TOF/TOF T2D nativeID format
- SCiLS Lab
- SCiLS Lab format
- SCiLS software
- SCION SQ
- SCION TQ
- search database details
- search engine input parameter
- Search engine output file URI
- search engine specific input metadata
- search engine specific input parameter
- search engine specific peptide sequence-level identification statistic
- search engine specific score
- search engine specific score for protein groups
- search engine specific score for proteins
- search engine specific score for proteoforms
- search input details
- search result details
- search statistics
- search time taken
- search tolerance minus value
- search tolerance plus value
- search tolerance specification
- search type
- second
- second column elution time
- second-pass peptide identification
- secondary electron
- secondary ionization
- secondary isotope peak
- sector mass spectrometer
- SELECT SERIES Cyclic IMS
- SELECT SERIES MRT
- selected ion current chromatogram
- selected ion detection
- selected ion flow tube
- selected ion m/z
- selected ion monitoring
- selected ion monitoring chromatogram
- selected precursor m/z
- selected reaction monitoring
- selected reaction monitoring chromatogram
- selection window attribute
- senior author
- septum
- SeqStatus
- sequence coverage
- Sequence database filter types
- Sequence database filters
- sequence multiply subsumable protein
- sequence same-set protein
- sequence sub-set protein
- sequence subsumable protein
- sequence-level spectral count
- SequenceType
- sequential m/z separation method
- SEQUEST
- SEQUEST input parameter
- SEQUEST out file format
- SEQUEST out folder
- SEQUEST SQT format
- SEQUEST summary
- SEQUEST:Chromatogram
- SEQUEST:CleavesAt
- SEQUEST:Consensus
- SEQUEST:consensus score
- SEQUEST:CullTo
- SEQUEST:deltacn
- SEQUEST:deltacnstar
- SEQUEST:DescriptionLines
- SEQUEST:expectation value
- SEQUEST:Fast
- SEQUEST:FormatAndLinks
- SEQUEST:Full
- SEQUEST:InfoAndLog
- SEQUEST:LimitTo
- SEQUEST:matched ions
- SEQUEST:modeCV
- SEQUEST:NormalizeXCorrValues
- SEQUEST:OutputLines
- SEQUEST:PeptideIdnumber
- SEQUEST:PeptideNumber
- SEQUEST:PeptideRankSp
- SEQUEST:PeptideSp
- SEQUEST:probability
- SEQUEST:ProcessAll
- SEQUEST:ProcessCV
- SEQUEST:SelectAdvancedCV
- SEQUEST:selectCV
- SEQUEST:SelectDefault
- SEQUEST:SequenceHeaderFilter
- SEQUEST:SequencePartialFilter
- SEQUEST:Sequences
- SEQUEST:sf
- SEQUEST:ShowFragmentIons
- SEQUEST:sort by dCn
- SEQUEST:sort by dM
- SEQUEST:sort by Ions
- SEQUEST:sort by MH+
- SEQUEST:sort by P
- SEQUEST:sort by PreviousAminoAcid
- SEQUEST:sort by Ref
- SEQUEST:sort by RSp
- SEQUEST:sort by Scan
- SEQUEST:sort by Sequence
- SEQUEST:sort by Sf
- SEQUEST:sort by Sp
- SEQUEST:sort by TIC
- SEQUEST:sort by XCorr
- SEQUEST:sort by z
- SEQUEST:sortCV
- SEQUEST:sp
- SEQUEST:sprank
- SEQUEST:spscore
- SEQUEST:Sum
- SEQUEST:TIC
- SEQUEST:TopNumber
- SEQUEST:TopPercentMostIntense
- SEQUEST:total ions
- SEQUEST:Uniq
- SEQUEST:ViewCV
- SEQUEST:xcorr
- SHA-1
- SHA-256
- Shimadzu Biotech database entity
- Shimadzu Biotech LCD format
- Shimadzu Biotech nativeID format
- Shimadzu Biotech QTOF nativeID format
- Shimadzu Corporation software
- Shimadzu instrument model
- Shimadzu MALDI-7090
- Shimadzu MALDI-TOF instrument model
- Shimadzu Scientific Instruments instrument model
- shuffle-and-reposition decoy spectrum
- signal peptide
- signal to noise array
- signal-to-noise ratio
- SILAC heavy reagent
- SILAC light reagent
- SILAC medium reagent
- SILAC quantitation analysis
- SILAC reagent
- SILACAnalyzer
- SIM spectrum
- SIM-XL
- SIM-XL score
- simple ratio of two values
- single identification result attribute
- single ion monitoring
- single peak list nativeID format
- single peak list nativeID format, combined spectra
- single protein identification statistic
- single reaction monitoring
- single run based metric
- single spectrum based metric
- single value
- singleton spectrum
- site:global FDR
- Skyline
- Skyline mzQuantML converter
- small molecule
- small molecule analysis software
- small molecule attribute
- small molecule confidence measure
- small molecule identification attribute
- small molecule list attribute
- small molecule modification attribute
- small molecule quantification datatype
- SMILES formula
- smoothing
- soft ionization
- software
- software input parameter
- software specific input parameter
- software vendor
- software version
- solariX
- solid sample state
- solid-state laser
- solution
- Sonar:Score
- sophisticated numerical annotation procedure
- source
- source attribute
- source data file
- source interface
- source interface manufacturer
- source interface model
- source potential
- source sprayer
- source sprayer manufacturer
- source sprayer model
- source sprayer type
- source temperature
- space charge effect
- spark ionization
- Spark Source Mass Spectrometry
- spControl
- special processing
- SpecificKey
- SpecificValue
- spectra combination
- spectra data details
- spectra half-TIC
- SpectraFilter
- spectral count feature
- spectral count peptide level quantitation
- spectral count protein level quantitation
- spectral count proteingroup level quantitation
- spectral counting quantitation analysis
- spectral library
- spectral library attribute
- spectral library search
- SpectraST
- SpectraST:delta
- SpectraST:discriminant score F
- SpectraST:dot
- SpectraST:dot_bias
- spectrum
- spectrum aggregation attribute
- spectrum aggregation type
- spectrum attribute
- spectrum descriptions
- spectrum from database integer nativeID format
- spectrum from database string nativeID format
- spectrum from ProteinScape database nativeID format
- spectrum generation information
- spectrum identification list result details
- spectrum identification result details
- spectrum identification statistical threshold
- spectrum identifier nativeID format
- spectrum identifier nativeID format, combined spectra
- spectrum instrument description
- spectrum interpretation
- Spectrum Mill for MassHunter Workstation
- spectrum multiply subsumable protein
- spectrum name
- spectrum origin attribute
- spectrum origin type
- spectrum property
- spectrum quality descriptions
- spectrum representation
- spectrum same-set protein
- spectrum sub-set protein
- spectrum subsumable protein
- spectrum title
- spectrum title
- spectrum type
- SpectrumMill directories
- SpectrumMill:Discriminant Score
- SpectrumMill:Score
- SpectrumMill:SPI
- spin coating MALDI sample preparation
- splash key
- sprayed MALDI matrix preparation
- SQ Detector 2
- SQID
- SQID:deltaScore
- SQID:protein score
- SQID:score
- square root transform
- SRM feature level quantitation
- SRM peptide level quantitation
- SRM protein level quantitation
- SRM proteingroup level quantitation
- SRM quantitation analysis
- SRM software
- SRM spectrum
- SRM transition attribute
- SRM transition ID
- SRM transition type
- SSQ 7000
- SSRCalc
- stable ion
- stainless steel plate
- standard
- standard error
- static field
- static supply electrospray
- statistical threshold
- stored waveform inverse fourier transform
- stripped peptide sequence
- structural formula
- study variable attribute
- study variable average function
- study variable variation function
- submitter keyword
- suface ionization
- sum of MatchedFeature values
- sum of spectra
- superelastic collision
- supplemental beam-type collision-induced dissociation
- supplemental collision energy
- supplemental collision-induced dissociation
- supported by repository but incomplete data and/or metadata
- Supported dataset by repository
- surface enhanced laser desorption ionization
- surface enhanced neat desorption
- surface ionization
- surface-assisted laser desorption ionization
- surface-induced dissociation
- surface-induced reaction
- Surveyor MSQ
- Surveyor PDA
- suspension
- sustained off-resonance irradiation
- SV
- SymBiot I
- SymBiot XVI
- Synapt G2 HDMS
- Synapt G2 MS
- Synapt G2-S HDMS
- Synapt G2-S MS
- SYNAPT G2-Si
- Synapt HDMS
- Synapt MS
- Synapt XS
- synchronous prefilter selection
- t-test
- t-test p-value
- tab delimited text format
- table
- tag search
- TagRecon
- tandem mass spectrometer
- target inclusion exclusion priority
- target list
- target SRM transition
- TargetAnalysis
- TaxName
- taxonomy nomenclature
- taxonomy: common name
- taxonomy: NCBI TaxID
- taxonomy: scientific name
- taxonomy: Swiss-Prot ID
- TDPortal
- TDPortal input parameter
- technical replicate
- temperature array
- TEMPUS TOF
- ten percent valley
- text format
- Th/s
- theoretical average m/z
- theoretical mass
- theoretical monoisotopic m/z
- thermal ionization
- Thermo Electron instrument model
- Thermo Finnigan instrument model
- Thermo Finnigan software
- Thermo Fisher Scientific instrument model
- Thermo nativeID format
- Thermo nativeID format, combined spectra
- Thermo RAW format
- Thermo Scientific instrument model
- ThermoRawFileParser
- thermospray inlet
- three sample run
- TIC quarters RT fraction
- Tide
- time array
- time lag focusing
- time series, time point X
- time unit
- time-delayed fragmentation spectrum
- time-digital converter
- time-of-flight
- time-of-flight mass spectrometer
- timsTOF
- timsTOF fleX
- timsTOF Pro
- timsTOF Pro 2
- timsTOF SCP
- TIQAM
- TissueView Software
- TMT quantitation analysis
- TMT reagent
- TMT reagent 126
- TMT reagent 127
- TMT reagent 127C
- TMT reagent 127N
- TMT reagent 128
- TMT reagent 128C
- TMT reagent 128N
- TMT reagent 129
- TMT reagent 129C
- TMT reagent 129N
- TMT reagent 130
- TMT reagent 130C
- TMT reagent 130N
- TMT reagent 131
- TODOscoring model
- TOF Total Path Length
- TOFCalibration
- tolerance on types
- top 20 peak unassigned intensity fraction
- top hat baseline reduction
- TopFD
- TopMG
- TopMG input parameter
- TopMG:error tolerance
- TopMG:fixed modification
- TopMG:max shift
- TopMG:mod file
- TopMG:N-term form
- TopMG:proteoform graph gap size
- TopMG:proteoform-level cutoff type
- TopMG:proteoform-level cutoff value
- TopMG:proteoform-level FDR
- TopMG:spectral cutoff type
- TopMG:spectral cutoff value
- TopMG:spectral E-value
- TopMG:spectral FDR
- TopMG:spectral p-value
- TopMG:thread number
- TopMG:use ASF-DIAGONAL
- TopMG:use TopFD feature
- TopMG:variable PTM number
- TopMG:variable PTM number in proteoform graph gap
- TOPP AdditiveSeries
- TOPP CompNovo
- TOPP CompNovoCID
- TOPP ConsensusID
- TOPP ConsensusMapNormalizer
- TOPP Decharger
- TOPP DTAExtractor
- TOPP EICExtractor
- TOPP FalseDiscoveryRate
- TOPP feature finder
- TOPP feature linker
- TOPP FeatureFinderCentroided
- TOPP FeatureFinderIsotopeWavelet
- TOPP FeatureFinderMetabo
- TOPP FeatureFinderMRM
- TOPP FeatureFinderRaw
- TOPP FeatureLinkerLabeled
- TOPP FeatureLinkerUnlabeled
- TOPP FeatureLinkerUnlabeledQT
- TOPP HighResPrecursorMassCorrector
- TOPP IDConflictResolver
- TOPP IDFileConverter
- TOPP IDFilter
- TOPP IDMapper
- TOPP IDMerger
- TOPP IDPosteriorErrorProbability
- TOPP IDRTCalibration
- TOPP InspectAdapter
- TOPP map aligner
- TOPP MapAlignerIdentification
- TOPP MapAlignerPoseClustering
- TOPP MapAlignerSpectrum
- TOPP MapRTTransformer
- TOPP MascotAdapter
- TOPP MascotAdapterOnline
- TOPP MassTraceExtractor
- TOPP MRMMapper
- TOPP MzTabExporter
- TOPP noise filter
- TOPP NoiseFilterGaussian
- TOPP NoiseFilterSGolay
- TOPP OMSSAAdapter
- TOPP OpenSwath component
- TOPP OpenSwathAnalyzer
- TOPP OpenSwathChromatogramExtractor
- TOPP OpenSwathDecoyGenerator
- TOPP OpenSwathFeatureXMLToTSV
- TOPP OpenSwathRTNormalizer
- TOPP peak picker
- TOPP PeakPickerHiRes
- TOPP PeakPickerWavelet
- TOPP PepNovoAdapter
- TOPP PeptideIndexer
- TOPP PrecursorIonSelector
- TOPP PrecursorMassCorrector
- TOPP ProteinInference
- TOPP ProteinQuantifier
- TOPP software
- TOPP software adaptor
- TOPP SpecLibSearcher
- TOPP spectra filter
- TOPP SpectraFilterBernNorm
- TOPP SpectraFilterMarkerMower
- TOPP SpectraFilterNLargest
- TOPP SpectraFilterNormalizer
- TOPP SpectraFilterParentPeakMower
- TOPP SpectraFilterScaler
- TOPP SpectraFilterSqrtMower
- TOPP SpectraFilterThresholdMower
- TOPP SpectraFilterWindowMower
- TOPP SpectraMerger
- TOPP XTandemAdapter
- TopPIC
- TopPIC input parameter
- TopPIC:combined spectrum number
- TopPIC:error tolerance
- TopPIC:fixed modification
- TopPIC:generating function
- TopPIC:max shift
- TopPIC:min shift
- TopPIC:MIScore
- TopPIC:MIScore threshold
- TopPIC:mod file
- TopPIC:N-term form
- TopPIC:proteoform-level cutoff type
- TopPIC:proteoform-level cutoff value
- TopPIC:proteoform-level FDR
- TopPIC:shift num
- TopPIC:spectral cutoff type
- TopPIC:spectral cutoff value
- TopPIC:spectral E-value
- TopPIC:spectral FDR
- TopPIC:spectral p-value
- TopPIC:thread number
- TopPIC:use TopFD feature
- total ion current
- total ion current chromatogram
- total unassigned intensity fraction
- total XIC area
- TRACE DSQ
- TraML format
- Tranche file hash
- Tranche project hash
- Trans-Proteomic Pipeline
- Trans-Proteomic Pipeline software
- transient recorder
- transit peptide
- transition
- transition optimized on specified instrument
- transition predicted by informatic analysis
- transition purported from an MS/MS spectrum on a different, specified instrument
- transition validated with an MS/MS spectrum on specified instrument
- transition validation attribute
- transition validation method
- translation frame
- translation start codons
- translation table
- translation table description
- transmission
- transmission quadrupole mass spectrometer
- trap-type collision-induced dissociation
- Trapper
- travelling wave ion mobility mass spectrometer
- Triple Quad 3500
- Triple Quad 4500
- Triple Quad 5500
- Triple Quad 6500
- Triple Quad 6500+
- Triple Quad 7500
- TripleTOF 4600
- TripleTOF 5600
- TripleTOF 5600+
- TripleTOF 6600
- TRITON
- TRIZAIC UPLC nanoTile
- truncation and zlib compression
- truncation, delta prediction and zlib compression
- truncation, linear prediction and zlib compression
- TruTOF
- TrypChymo
- Trypsin
- Trypsin/P
- TSQ
- TSQ 7000
- TSQ 8000 Evo
- TSQ 9000
- TSQ Altis
- TSQ Endura
- TSQ Quantis
- TSQ Quantiva
- TSQ Quantum
- TSQ Quantum Access
- TSQ Quantum Ultra
- TSQ Quantum Ultra AM
- TSQ Vantage
- tube lens voltage
- two sample run
- two-dimensional gas chromatography with discrete modulation time steps
- two-dimensional gas chromatography with fixed modulation time
- two-dimensional liquid chromatography with discrete modulation time steps
- two-dimensional liquid chromatography with fixed modulation time
- UIMF format
- UIMF nativeID format
- ultima
- ultraflex
- ultraflex III TOF/TOF
- ultraflex TOF/TOF
- ultrafleXtreme
- ultraviolet photodissociation
- UltroTOF-Q
- unidentified modification monoisotopic mass delta
- unified atomic mass unit
- UNIFY
- unimolecular dissociation
- uninterpreted spectrum
- UniProtKB text sequence format
- UniProtKB XML sequence format
- unit
- universal spectrum identifier
- unknown modification
- unlabeled peptidoform
- unmapped peptide
- unmapped protein
- unnatural peptidoform decoy spectrum
- unrelated species decoy spectrum
- unspecific cleavage
- unstable ion
- Unsupported dataset by repository
- V8-DE
- V8-E
- vacuum drying MALDI sample preparation
- value between 0 and 1 inclusive
- value between 0 and 1000 inclusive
- value greater than zero
- value greater than zero but less than or equal to one
- Variable modification
- Varian instrument model
- Variance stabilizing normalization
- Variant
- VariantComplex
- VariantSimple
- variation coefficient
- Velos Plus
- vendor
- vertical ionization
- Vion IMS QTof
- volt-second per square centimeter
- Voyager Biospectrometry Workstation System
- Voyager-DE PRO
- Voyager-DE STR
- WARP-LC
- Waters instrument model
- Waters nativeID format
- Waters nativeID format, combined spectra
- Waters raw format
- Waters software
- wavelength
- wavelength array
- wavelet transformation smoothing
- WIFF nativeID format
- WIFF nativeID format, combined spectra
- X!Tandem
- X!Tandem xml format
- X!Tandem:expect
- X!Tandem:hyperscore
- x-Tracker
- X500R QTOF
- Xcalibur
- XCMS
- XCMS:area
- XCMS:intf
- XCMS:into
- XCMS:maxo
- Xevo G2 Q-Tof
- Xevo G2 Tof
- Xevo G2 XS Tof
- Xevo G2-S QTof
- Xevo G2-S Tof
- Xevo Q-Tof
- Xevo TQ MS
- Xevo TQ-S
- Xevo TQ-S micro
- Xevo TQ-XS
- Xevo TQD
- xi
- xi:score
- XIC area
- XIC metric
- XIC-FWHM quantiles
- XIC-Height quartile ratios
- XIC50 fraction
- xiFDR
- XPRESS
- XRef
- ZCore:probScore
- zlib compression
- zoom scan
2E Mass Spectrumc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000321
accelerator mass spectrometryc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000238
acquisition softwarec back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1001455
- has super-classes
- softwarec
- has sub-classes
- 4000 Series Explorer Softwarec, 4700 Explorerc, 6300 Series Ion Trap Data Analysis Softwarec, Analystc, ChromaTOF HRT softwarec, ChromaTOF softwarec, Data Explorerc, FlexControlc, GPS Explorerc, HCTcontrolc, MALDI Solutionsc, MALDI Solutions LC-MALDIc, MassHunter Data Acquisitionc, MassHunter Easy Accessc, MassLynxc, SCIEX TOF/TOF Series Explorer Softwarec, Voyager Biospectrometry Workstation Systemc, Xcaliburc, apexControlc, dpControlc, esquireControlc, micrOTOFcontrolc, spControlc
IRI: http://purl.obolibrary.org/obo/MS_1001326
additional descriptionc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000461
IRI: http://purl.obolibrary.org/obo/MS_1003055
- has super-classes
- moleculec
- has sub-classes
- adduct ionc
Agilent instrument modelc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000490
- has super-classes
- instrument modelc
- has sub-classes
- 1200 series LC/MSD SLc, 1200 series LC/MSD VLc, 6110 Quadrupole LC/MSc, 6120A Quadrupole LC/MSc, 6120B Quadrupole LC/MSc, 6130 Quadrupole LC/MSc, 6140 Quadrupole LC/MSc, 6150 Quadrupole LC/MSc, 6210 Time-of-Flight LC/MSc, 6220 Time-of-Flight LC/MSc, 6224 Time-of-Flight LC/MSc, 6230A Time-of-Flight LC/MSc, 6230B Time-of-Flight LC/MSc, 6310 Ion Trap LC/MSc, 6320 Ion Trap LC/MSc, 6330 Ion Trap LC/MSc, 6340 Ion Trap LC/MSc, 6410 Triple Quadrupole LC/MSc, 6420 Triple Quadrupole LC/MSc, 6430 Triple Quadrupole LC/MSc, 6460 Triple Quadrupole LC/MSc, 6490 Triple Quadrupole LC/MSc, 6495A Triple Quadrupole LC/MSc, 6495B Triple Quadrupole LC/MSc, 6510 Quadrupole Time-of-Flight LC/MSc, 6520A Quadrupole Time-of-Flight LC/MSc, 6520B Q-TOF LC/MSc, 6530A Q-TOF LC/MSc, 6530B Q-TOF LC/MSc, 6538 Q-TOF LC/MSc, 6540 Q-TOF LC/MSc, 6542 Q-TOF LC/MSc, 6545 Q-TOF LC/MSc, 6550 iFunnel Q-TOF LC/MSc, 6550A iFunnel Q-TOF LC/MSc, 6560 Q-TOF LC/MSc, 6570 Q-TOF LC/MSc, 7000A Triple Quadrupole GC/MSc, 7000B Triple Quadrupole GC/MSc, 7800 Quadrupole ICP-MSc, 8800 Triple Quadrupole ICP-MSc
Agilent softwarec back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000689
- has super-classes
- softwarec
- has sub-classes
- 6300 Series Ion Trap Data Analysis Softwarec, Genespring MSc, METLINc, MassHunter BioConfirmc, MassHunter Data Acquisitionc, MassHunter Easy Accessc, MassHunter Mass Profilerc, MassHunter Metabolite IDc, MassHunter Qualitative Analysisc, MassHunter Quantitative Analysisc, Spectrum Mill for MassHunter Workstationc
alpha-cleavagec back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000410
alternatingc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000466
alternating polarity modec back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1002833
- has super-classes
- run attributec
IRI: http://purl.obolibrary.org/obo/MS_1003039
- has super-classes
- small moleculec
IRI: http://purl.obolibrary.org/obo/MS_1000355
analysis softwarec back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1001456
- has super-classes
- softwarec
- has sub-classes
- 4000 Series Explorer Softwarec, 4700 Explorerc, 6300 Series Ion Trap Data Analysis Softwarec, Amandac, Analystc, Andromedac, Ascore softwarec, BioAnalystc, BioToolsc, Bioworksc, Byonicc, CAMERAc, CLINPROTc, CLINPROT microc, ChromaTOF HRT softwarec, ChromaTOF softwarec, Cometc, Compassc, Compass OpenAccessc, Compass for HCT/esquirec, Compass for micrOTOFc, DTASelectc, Data Explorerc, DataAnalysisc, DeBunkerc, DirecTagc, EPIFANYc, Empowerc, FlexAnalysisc, GPS Explorerc, Genespring MSc, IdentiPyc, IsobariQc, LightSight Softwarec, MALDI Solutionsc, MALDI Solutions LC-MALDIc, METLINc, MRMPilot Softwarec, MS-GFc, MS-GF+c, MSDKc, MSFraggerc, MSPathFinderc, MSQuantc, MSnbasec, MZminec, Maltcmsc, MarkerView Softwarec, Mascotc, Mascot Distillerc, Mascot Integrac, Mascot Parserc, MassHunter BioConfirmc, MassHunter Mass Profilerc, MassHunter Metabolite IDc, MassHunter Qualitative Analysisc, MassHunter Quantitative Analysisc, MassLynxc, Mauic, MaxQuantc, MetaMorpheusc, Morpheusc, MultiQuantc, MyriMatchc, NIST MSPepSearchc, Novorc, OMSSAc, PAnalyzerc, PEAKS Nodec, PEAKS Onlinec, PEAKS Studioc, PIAc, PTX-QCc, PatternLabc, PeakForestc, PepNovoc, Pepitomec, PeptideShakerc, Percolatorc, Phenyxc, Philosopherc, PinPointc, Pro BLASTc, Pro ICATc, Pro IDc, Pro Quantc, ProLuCIDc, ProSightc, ProfileAnalysisc, Prolinec, ProteinExtractorc, ProteinLynx Global Serverc, ProteinPilot Softwarec, ProteinProspectorc, ProteinScapec, Proteiosc, ProteoWizard softwarec, Proteome Discovererc, QuaMeter IDFreec, QuantAnalysisc, SCIEX TOF/TOF Series Explorer Softwarec, SCiLS Labc, SEQUESTc, SIM-XLc, SQIDc, Scaffoldc, Skyline mzQuantML converterc, SpectraSTc, Spectrum Mill for MassHunter Workstationc, TDPortalc, TOPP softwarec, TagReconc, Tidec, TissueView Softwarec, TopFDc, TopMGc, TopPICc, Trans-Proteomic Pipelinec, Trans-Proteomic Pipeline softwarec, UNIFYc, Voyager Biospectrometry Workstation Systemc, X!Tandemc, XCMSc, Xcaliburc, flexImagingc, greylagc, i3tmsc, iMonDBc, mzRc, mzidLibc, pFindc, pNovoc, pyteomicsc, small molecule analysis softwarec, xic, xiFDRc
analyzer typec back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000010
anti-aromatic ionc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000356
aromatic ionc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000354
association reactionc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000409
IRI: http://purl.obolibrary.org/obo/MS_1000925
- has super-classes
- SRM softwarec
Atmostpheric Pressure Photoionizationc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000241
IRI: http://purl.obolibrary.org/obo/MS_1003034
- has super-classes
- molecular entityc
axial ejection linear ion trapc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000078
- has super-classes
- linear ion trapc
IRI: http://purl.obolibrary.org/obo/MS_1000210
- has super-classes
- peakc
beta-cleavagec back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000411
binary data arrayc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000513
- has super-classes
- part_ofop some spectrumc
- part_ofop some chromatogramc
- has sub-classes
- baseline arrayc, charge arrayc, flow rate arrayc, intensity arrayc, ion mobility arrayc, m/z arrayc, mass arrayc, mean charge arrayc, noise arrayc, non-standard data arrayc, pressure arrayc, resolution arrayc, sampled noise baseline arrayc, sampled noise intensity arrayc, sampled noise m/z arrayc, scanning quadrupole position lower bound m/z arrayc, scanning quadrupole position upper bound m/z arrayc, signal to noise arrayc, temperature arrayc, time arrayc, wavelength arrayc
binary data compression typec back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000572
- has super-classes
- part_ofop some spectrumc
- part_ofop some chromatogramc
- has sub-classes
- MS-Numpress linear prediction compressionc, MS-Numpress linear prediction compression followed by zlib compressionc, MS-Numpress positive integer compressionc, MS-Numpress positive integer compression followed by zlib compressionc, MS-Numpress short logged float compressionc, MS-Numpress short logged float compression followed by zlib compressionc, no compressionc, truncation and zlib compressionc, truncation, delta prediction and zlib compressionc, truncation, linear prediction and zlib compressionc, zlib compressionc
Bruker Daltonics flex seriesc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1001534
- has super-classes
- Bruker Daltonics instrument modelc
- has sub-classes
- OmniFlexc, autoflexc, autoflex IIc, autoflex II TOF/TOFc, autoflex III TOF/TOF smartbeamc, autoflex III smartbeamc, autoflex TOF/TOFc, microflexc, microflex IIc, microflex LRFc, microflex LTc, rapifleXc, ultrafleXtremec, ultraflexc, ultraflex III TOF/TOFc, ultraflex TOF/TOFc
Bruker Daltonics instrument modelc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000122
- has super-classes
- instrument modelc
- has sub-classes
- Bruker Daltonics BioTOF seriesc, Bruker Daltonics EVOQ seriesc, Bruker Daltonics HCT Seriesc, Bruker Daltonics SCION seriesc, Bruker Daltonics amaZon seriesc, Bruker Daltonics apex seriesc, Bruker Daltonics esquire seriesc, Bruker Daltonics flex seriesc, Bruker Daltonics maXis seriesc, Bruker Daltonics micrOTOF seriesc, Bruker Daltonics solarix seriesc, Bruker Daltonics timsTOF seriesc
Bruker softwarec back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000692
- has super-classes
- softwarec
- has sub-classes
- BioToolsc, CLINPROTc, CLINPROT microc, CLINPROT robotc, ClinProToolsc, Compassc, Compass OpenAccessc, Compass Security Packc, Compass for HCT/esquirec, Compass for micrOTOFc, CompassXportc, CompassXtractc, DataAnalysisc, FlexAnalysisc, FlexControlc, GENOLINKc, GenoToolsc, HCTcontrolc, HyStarc, PROTEINEERc, PROTEINEER dpc, PROTEINEER fcc, PROTEINEER spIIc, PROTEINEER-LCc, PolyToolsc, ProfileAnalysisc, ProteinExtractorc, ProteinScapec, PureDiskc, QuantAnalysisc, TargetAnalysisc, WARP-LCc, apexControlc, dpControlc, esquireControlc, flexImagingc, micrOTOFcontrolc, spControlc
BSI softwarec back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1001949
- has super-classes
- softwarec
cationized moleculec back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000357
charge inversion mass spectrumc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000322
- has super-classes
- mass spectrumc
charge inversion reactionc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000414
charge permutation reactionc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000415
charge stripping reactionc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000416
charge transfer reactionc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000417
charge-induced fragmentationc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000413
charge-remote fragmentationc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000243
chromatographyc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000054
cleavage agent namec back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1001045
- has super-classes
- cleavage agent detailsc
- has sub-classes
- 2-iodobenzoatec, Arg-Cc, Asp-Nc, Asp-N_ambicc, CNBrc, Chymotrypsinc, Formic_acidc, Lys-Cc, Lys-C/Pc, Lys-Nc, LysargiNasec, NoEnzymec, PepsinAc, TrypChymoc, Trypsinc, Trypsin/Pc, V8-DEc, V8-Ec, glutamyl endopeptidasec, leukocyte elastasec, no cleavagec, proline endopeptidasec, unspecific cleavagec
Cleavage agent regular expressionc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1001180
- has super-classes
- regular expressionc
- part_ofop some cleavage agent detailsc
- has sub-classes
- ((?<=D))|((?=D))c, (?<=K)c, (?<=K)(?!P)c, (?<=M)c, (?<=R)(?!P)c, (?<=W)c, (?<=[ALIV])(?c, (?<=[BDEZ])(?!P)c, (?<=[EZ])(?!P)c, (?<=[FL])c, (?<=[FYWLKR])(?!P)c, (?<=[FYWL])(?!P)c, (?<=[HKR]P)(?c, (?<=[KR])c, (?<=[KR])(?!P)c, (?<=[^E]E)c, (?=[BD])c, (?=[DE])c, (?=[KR])c
IRI: http://purl.obolibrary.org/obo/MS_1000672
- has super-classes
- SCIEX softwarec
cluster ionc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000358
IRI: http://purl.obolibrary.org/obo/MS_1002036
- has super-classes
- contact rolec
collisional excitationc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000418
combined ms-ms + spectral library searchc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1002755
- has super-classes
- search typec
combined pmf + ms-ms searchc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1001584
- has super-classes
- search typec
consecutive reaction monitoringc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000244
consecutive reaction monitoringc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000327
IRI: http://purl.obolibrary.org/obo/MS_1000088
constant neutral gain scanc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000324
constant neutral gain spectrumc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000325
- has super-classes
- mass spectrumc
constant neutral loss scanc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000323
constant neutral loss spectrumc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000326
- has super-classes
- mass spectrumc
constant neutral mass lossc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000097
continuous flow fast atom bombardmentc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000055
- has super-classes
- inlet typec
Conventional ionc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000359
IRI: http://purl.obolibrary.org/obo/NCIT_C68811
- has super-classes
- n c i t c25404c
cyclotron motionc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000305
IRI: http://purl.obolibrary.org/obo/MS_1000212
data processing actionc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000543
- has super-classes
- data transformationc
- has sub-classes
- adduct deconvolutionc, baseline reductionc, charge deconvolutionc, charge state calculationc, data filteringc, deisotopingc, intensity normalizationc, ion mobility deconvolutionc, m/z calibrationc, peak intensity transformc, peak pickingc, precursor recalculationc, retention time alignmentc, smoothingc
data processing softwarec back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1001457
- has super-classes
- softwarec
- has sub-classes
- 4000 Series Explorer Softwarec, 4700 Explorerc, 6300 Series Ion Trap Data Analysis Softwarec, ALEXc, ALEX123c, Analystc, BioAnalystc, BioToolsc, Bioworksc, CAMERAc, CLINPROTc, CLINPROT microc, ChromaTOF HRT softwarec, ChromaTOF softwarec, Compassc, Compass OpenAccessc, Compass for HCT/esquirec, Compass for micrOTOFc, CompassXportc, CompassXtractc, Data Explorerc, DataAnalysisc, Empowerc, FlexAnalysisc, GPS Explorerc, Genespring MSc, Greazyc, LIMSAc, LIQUIDc, LOBSTAHSc, LPPtigerc, LightSight Softwarec, LipiDexc, Lipid Data Analyzerc, Lipid-Proc, LipidBlastc, LipidFinderc, LipidHunterc, LipidMatchc, LipidQAc, LipidXplorerc, MALDI Solutionsc, MALDI Solutions LC-MALDIc, METLINc, MRMPilot Softwarec, MS-DIALc, MSDKc, MSnbasec, MZminec, Maltcmsc, MarkerView Softwarec, MassHunter BioConfirmc, MassHunter Mass Profilerc, MassHunter Metabolite IDc, MassHunter Qualitative Analysisc, MassHunter Quantitative Analysisc, MassLynxc, Mauic, MultiQuantc, MzStarc, MzWiffc, PEAKS Nodec, PEAKS Onlinec, PEAKS Studioc, PepFinderc, PinPointc, Pro BLASTc, Pro ICATc, Pro IDc, Pro Quantc, ProfileAnalysisc, ProteinLynx Global Serverc, ProteinPilot Softwarec, Proteiosc, ProteoWizard softwarec, Proteome Discovererc, QuantAnalysisc, ReAdWc, SCIEX TOF/TOF Series Explorer Softwarec, SCiLS Labc, SQIDc, Spectrum Mill for MassHunter Workstationc, TOPP softwarec, ThermoRawFileParserc, TissueView Softwarec, Trapperc, UNIFYc, Voyager Biospectrometry Workstation Systemc, XCMSc, Xcaliburc, conversion softwarec, flexImagingc, massWolfc, ms_deisotopec, mzRc, postprocessing softwarec, preprocessing softwarec, pymzMLc
database IPI_arabidopsisc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1001290
- has super-classes
- database namec
database IPI_zebrafishc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1001287
- has super-classes
- database namec
IRI: http://purl.obolibrary.org/obo/MS_1000754
- has super-classes
- TOPP softwarec
IRI: http://purl.obolibrary.org/obo/MS_1000755
- has super-classes
- TOPP softwarec
de facto standardc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000899
- has super-classes
- standardc
de novo searchc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1001010
- has super-classes
- search typec
decoy DB from ESTc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1001295
decoy DB from IPI_arabidopsisc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1001294
decoy DB from IPI_chickenc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1001298
decoy DB from IPI_cowc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1001299
decoy DB from IPI_humanc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1001300
decoy DB from IPI_mousec back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1001293
decoy DB from IPI_ratc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1001292
decoy DB from IPI_zebrafishc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1001296
decoy DB from nrc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1001291
decoy DB from UniProtKB/Swiss-Protc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1001297
decoy DB from UniProtKB/TrEMBLc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1002061
IRI: http://purl.obolibrary.org/obo/NCIT_C45781
- has super-classes
- n c i t c25447c
IRI: http://purl.obolibrary.org/obo/MS_1000453
- has super-classes
- part_ofop some instrumentc
detector typec back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000026
- has super-classes
- part_ofop some detectorc
- has sub-classes
- array detectorc, channeltronc, conversion dynodec, daly detectorc, dynodec, electron multiplierc, faraday cupc, fluorescence detectorc, focal plane collectorc, inductive detectorc, ion-to-photon detectorc, multi-collectorc, photomultiplierc, point collectorc, postacceleration detectorc
diagnostic ionc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000360
dimeric ionc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000361
direct inletc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000056
- has super-classes
- inlet typec
direct insertion probec back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000248
- has super-classes
- inlet typec
direct liquid introductionc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000249
- has super-classes
- inlet typec
dissociation methodc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000044
- has super-classes
- part_ofop some precursor activationc
- has sub-classes
- LIFTc, blackbody infrared radiative dissociationc, collision-induced dissociationc, combined dissociation methodc, electron capture dissociationc, electron transfer dissociationc, in-source collision-induced dissociationc, low-energy collision-induced dissociationc, negative electron transfer dissociationc, photodissociationc, plasma desorptionc, post-source decayc, pulsed q dissociationc, surface-induced dissociationc, sustained off-resonance irradiationc
distonic ionc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000362
double-focusing mass spectrometerc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000289
IRI: http://purl.obolibrary.org/obo/NCIT_C25330
- has super-classes
- n c i t c21514c
IRI: http://purl.obolibrary.org/obo/MS_1000852
- has super-classes
- laser typec
dynamic mass spectrometryc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000306
IRI: http://purl.obolibrary.org/obo/MS_1000347
- has super-classes
- detector typec
electron affinityc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000213
- has super-classes
- has value typeop some xsd floatc
electron energy obsoletec back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000214
electron voltc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000137
electron-induced excitation in organicsc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000252
Electronic Ionizationc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000072
IRI: http://purl.obolibrary.org/obo/MS_1000155
IRI: http://purl.obolibrary.org/obo/MS_1000047
- has super-classes
- sample statec
energy unitc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000046
- has super-classes
- u o 0000000
enhanced multiply charged spectrumc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000789
- has super-classes
- MS1 spectrumc
enhanced resolution scanc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000791
IRI: http://purl.obolibrary.org/obo/MS_1000363
environment metricc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_4000024
- has super-classes
- QC metricc
even-electron ionc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000251
IRI: http://purl.obolibrary.org/obo/MS_1000215
- has super-classes
- has_unitsop some u o 0000002c
- has value typeop some xsd floatc
Experiment additional parameterc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1002844
- has super-classes
- spectrum generation informationc
- has sub-classes
- Accepted manuscriptc, Associated file URIc, Data derived from previous datasetc, Dataset FTP locationc, Dataset with its publication pendingc, Dataset with no associated published manuscriptc, Experimental information has been refined since this experiment was originally made publicly availablec, No PTMs are included in the datasetc, Non peer-reviewed datasetc, Original datac, Peer-reviewed datasetc, ProteomeCentral dataset URIc, Referencec, Reprocessed complete datasetc, Reprocessed subset datasetc, Supported dataset by repositoryc, Unsupported dataset by repositoryc, supported by repository but incomplete data and/or metadatac
Experimental information has been refined since this experiment was originally made publicly availablec back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1002867
- has super-classes
- Experiment additional parameterc
exponentialc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000094
- has super-classes
- scan lawc
external reference identifierc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000878
- has super-classes
- external reference datac
- has sub-classes
- CPTAC accession numberc, Digital Object Identifier (DOI)c, MassIVE dataset URIc, MassIVE dataset identifierc, PASSEL experiment URIc, PASSEL transition group browser URIc, PRIDE experiment URIc, PRIDE project URIc, Panorama Public dataset URIc, Panorama Public dataset identifierc, PeptideAtlas dataset URIc, ProteomeXchange accession numberc, ProteomeXchange accession number version numberc, ProteomeXchange dataset identifier reanalysis numberc, ProteomeXchange project tagc, PubMed identifierc, Tranche file hashc, Tranche project hashc, iProX dataset URIc, iProX dataset identifierc, jPOST dataset URIc, jPOST dataset identifierc
fast atom bombardment ionizationc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000074
- has super-classes
- ionization typec
feature-level quantification datatypec back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1002735
- has super-classes
- quantification datatypec
- has sub-classes
- LC-MS feature intensityc, LC-MS feature volumec, MS1 feature areac, MS1 feature maximum intensityc, MaxQuant:feature intensityc, Progenesis:feature intensityc, XCMS:areac, XCMS:intfc, XCMS:intoc, XCMS:maxoc, sum of MatchedFeature valuesc
IRI: http://purl.obolibrary.org/obo/MS_1000757
- has super-classes
- TOPP softwarec
IRI: http://purl.obolibrary.org/obo/MS_1000758
- has super-classes
- TOPP softwarec
flow injection analysisc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000058
- has super-classes
- inlet typec
fourier transform ion cyclotron resonance mass spectrometerc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000079
- has super-classes
- mass analyzer typec
fragment ionc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000364
fragmentation ion typec back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1002307
- has super-classes
- product ion attributec
- has sub-classes
- frag: TMT ETD reporter ionc, frag: TMT reporter ionc, frag: a ionc, frag: a ion - H2Oc, frag: a ion - NH3c, frag: b ionc, frag: b ion - H2Oc, frag: b ion - NH3c, frag: c ionc, frag: c ion - H2Oc, frag: c ion - NH3c, frag: d ionc, frag: iTRAQ 4plex reporter ionc, frag: iTRAQ 8plex reporter ionc, frag: immonium ionc, frag: internal ya ionc, frag: internal yb ionc, frag: isobaric label ionc, frag: precursor ionc, frag: precursor ion - H2Oc, frag: precursor ion - NH3c, frag: v ionc, frag: w ionc, frag: x ionc, frag: x ion - H2Oc, frag: x ion - NH3c, frag: y ionc, frag: y ion - H2Oc, frag: y ion - NH3c, frag: z ionc, frag: z ion - H2Oc, frag: z ion - NH3c, frag: z+1 ionc, frag: z+2 ionc, secondary isotope peakc
free electron laserc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000853
- has super-classes
- laser typec
IRI: http://purl.obolibrary.org/obo/MS_1000498
IRI: http://purl.obolibrary.org/obo/MS_1000850
- has super-classes
- laser typec
gaseous sample statec back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000048
- has super-classes
- sample statec
Gaussian smoothingc back to ToC or Class ToC
IRI: http://purl.obolibrary.org/obo/MS_1000784
- has super-classes
- smoothingc
IRI: http://purl.obolibrary.org/obo/MS_1000723
- has super-classes
- Bruker softwarec
IRI: http://purl.obolibrary.org/obo/MS_1000724
- has super-classes
- Bruker softwarec