@prefix rdf: . @prefix : . @prefix cl: . @prefix dc: . @prefix go: . @prefix obo: . @prefix owl: . @prefix xml: . @prefix xsd: . @prefix cito: . @prefix core: . @prefix doap: . @prefix doku: . @prefix foaf: . @prefix obo2: . @prefix pato: . @prefix rdfs: . @prefix skos: . @prefix chebi: . @prefix swrla: . @prefix terms: . @prefix chebi3: . @prefix chebi4: . @prefix chebi5: . @prefix ubprop: . @prefix protege: . @prefix subsets: . @prefix oboInOwl: . @prefix ncbitaxon: . @prefix oboInOwl1: . obo:IAO_0000115 a owl:AnnotationProperty ; rdfs:label "definition"^^xsd:string . obo:IAO_0100001 a owl:AnnotationProperty ; rdfs:label "term replaced by"^^xsd:string . obo:MS_0000000 obo:IAO_0000115 "Proteomics Standards Initiative Mass Spectrometry Vocabularies."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:0000000"^^xsd:string ; a owl:Class ; rdfs:label "Proteomics Standards Initiative Mass Spectrometry Vocabularies"^^xsd:string . obo:MS_1000001 obo:IAO_0000115 "A reference number relevant to the sample under study."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000001"^^xsd:string ; a owl:Class ; rdfs:label "sample number"^^xsd:string ; rdfs:subClassOf obo:MS_1000548, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000002 obo:IAO_0000115 "A reference string relevant to the sample under study."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000002"^^xsd:string ; a owl:Class ; rdfs:label "sample name"^^xsd:string ; rdfs:subClassOf obo:MS_1000548, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000003 obo:IAO_0000115 "The chemical phase of a pure sample, or the state of a mixed sample."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000003"^^xsd:string ; a owl:Class ; rdfs:label "sample state"^^xsd:string ; rdfs:subClassOf obo:MS_1000548 . obo:MS_1000004 obo:IAO_0000115 "Total mass of sample used."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000004"^^xsd:string ; a owl:Class ; rdfs:label "sample mass"^^xsd:string ; rdfs:subClassOf obo:MS_1000548, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000021 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000005 obo:IAO_0000115 "Total volume of solution used."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000005"^^xsd:string ; a owl:Class ; rdfs:label "sample volume"^^xsd:string ; rdfs:subClassOf obo:MS_1000548, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000098 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000006 obo:IAO_0000115 "Concentration of sample in picomol/ul, femtomol/ul or attomol/ul solution used."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000006"^^xsd:string ; a owl:Class ; rdfs:label "sample concentration"^^xsd:string ; rdfs:subClassOf obo:MS_1000548, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000175 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000007 obo:IAO_0000115 "The nature of the sample inlet."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000007"^^xsd:string ; a owl:Class ; rdfs:label "inlet type"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000458 ] . obo:MS_1000008 obo:IAO_0000115 "The method by which gas phase ions are generated from the sample."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000008"^^xsd:string ; a owl:Class ; rdfs:label "ionization type"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000458 ] . obo:MS_1000009 obo:IAO_0000115 "OBSOLETE Whether positive or negative ions are selected for analysis by the spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000009"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was replaced by scan polarity (MS:1000465)."^^xsd:string ; rdfs:label "ionization mode"^^xsd:string ; owl:deprecated true . obo:MS_1000010 obo:IAO_0000115 "OBSOLETE The common name of the particular analyzer stage being described. Synonym of mass analyzer, should be obsoleted."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000010"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "analyzer type"^^xsd:string ; owl:deprecated true . obo:MS_1000011 obo:IAO_0000115 "Smallest mass difference between two equal magnitude peaks so that the valley between them is a specified fraction of the peak height."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000011"^^xsd:string ; a owl:Class ; rdfs:label "mass resolution"^^xsd:string ; rdfs:subClassOf obo:MS_1000503, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000012 obo:IAO_0000115 "Which of the available standard measures is used to define whether two peaks are separate."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000012"^^xsd:string ; a owl:Class ; rdfs:label "resolution measurement method"^^xsd:string ; rdfs:subClassOf obo:MS_1000596 . obo:MS_1000013 obo:IAO_0000115 "OBSOLETE Specify the nature of resolution for the mass analyzer. Resolution is usually either constant with respect to m/z or proportional to m/z."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000013"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "resolution type"^^xsd:string ; owl:deprecated true . obo:MS_1000014 obo:IAO_0000115 "Accuracy is the degree of conformity of a measured mass to its actual value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000014"^^xsd:string ; a owl:Class ; rdfs:label "accuracy"^^xsd:string ; rdfs:subClassOf obo:MS_1000480, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000169 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000015 obo:IAO_0000115 "Rate in Th/sec for scanning analyzers."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000015"^^xsd:string ; a owl:Class ; rdfs:label "scan rate"^^xsd:string ; rdfs:subClassOf obo:MS_1000503, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000807 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000016 obo:IAO_0000115 "The time that an analyzer started a scan, relative to the start of the MS run."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000016"^^xsd:string ; a owl:Class ; rdfs:label "scan start time"^^xsd:string ; rdfs:subClassOf obo:MS_1000503, obo:MS_1002345, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000031 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000017 obo:IAO_0000115 "OBSOLETE Describes the type of mass analysis being performed. Two primary modes are: typical acquisition over a range of masses (Mass Scan), and Selected Ion Detection. The primary difference is that Selected Ion Detection produces a single value for the signal at the selected mass rather than producing a mass spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000017"^^xsd:string ; a owl:Class ; rdfs:comment "OBSOLETE This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "Scan Function"^^xsd:string ; owl:deprecated true . obo:MS_1000018 obo:IAO_0000115 "Direction in terms of m/z of the scan for scanning analyzers (low to high, or high to low)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000018"^^xsd:string ; a owl:Class ; rdfs:label "scan direction"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000441 ] . obo:MS_1000019 obo:IAO_0000115 "Describes the function in control of the m/z scan (for scanning instruments). Commonly the scan function is linear, but in principle any function can be used."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000019"^^xsd:string ; a owl:Class ; rdfs:label "scan law"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000441 ] . obo:MS_1000020 obo:IAO_0000115 "Describes the acquisition data type produced by a tandem mass spectrometry experiment."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "Tandem Scanning Method"^^xsd:string ; oboInOwl:id "MS:1000020"^^xsd:string ; a owl:Class ; rdfs:comment "OBSOLETE This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "scanning method"^^xsd:string ; owl:deprecated true . obo:MS_1000021 obo:IAO_0000115 "Status of the reflectron, turned on or off."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000021"^^xsd:string ; a owl:Class ; rdfs:label "reflectron state"^^xsd:string ; rdfs:subClassOf obo:MS_1000480 . obo:MS_1000022 obo:IAO_0000115 "The length of the field free drift space in a time of flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000022"^^xsd:string ; a owl:Class ; rdfs:label "TOF Total Path Length"^^xsd:string ; rdfs:subClassOf obo:MS_1000480, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000008 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000023 obo:IAO_0000115 "OBSOLETE The total width (i.e. not half for plus-or-minus) of the gate applied around a selected precursor ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000023"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "isolation width"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] ; owl:deprecated true . obo:MS_1000024 obo:IAO_0000115 "Final MS level achieved when performing PFF with the ion trap (e.g. MS E10)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000024"^^xsd:string ; a owl:Class ; rdfs:label "final MS exponent"^^xsd:string ; rdfs:subClassOf obo:MS_1000480, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1000025 obo:IAO_0000115 "A property of space that produces a force on a charged particle equal to qv x B where q is the particle charge and v its velocity."^^xsd:string ; oboInOwl:hasExactSynonym "B"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "Magnetic Field"^^xsd:string ; oboInOwl:id "MS:1000025"^^xsd:string ; a owl:Class ; rdfs:label "magnetic field strength"^^xsd:string ; rdfs:subClassOf obo:MS_1000480, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000228 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000026 obo:IAO_0000115 "Type of detector used in the mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000026"^^xsd:string ; a owl:Class ; rdfs:label "detector type"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000453 ] . obo:MS_1000027 obo:IAO_0000115 "Method by which detector signal is acquired by the data system."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000027"^^xsd:string ; a owl:Class ; rdfs:label "detector acquisition mode"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000453 ] . obo:MS_1000028 obo:IAO_0000115 "The resolving power of the detector to detect the smallest difference between two ions so that the valley between them is a specified fraction of the peak height."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000028"^^xsd:string ; a owl:Class ; rdfs:label "detector resolution"^^xsd:string ; rdfs:subClassOf obo:MS_1000481, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000029 obo:IAO_0000115 "The rate of signal sampling (measurement) with respect to time."^^xsd:string ; oboInOwl:hasNarrowSynonym "ADC Sampling Frequency"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000029"^^xsd:string ; a owl:Class ; rdfs:label "sampling frequency"^^xsd:string ; rdfs:subClassOf obo:MS_1000481, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000106 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000030 obo:IAO_0000115 "OBSOLETE Name of instrument vendor."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000030"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was replaced by instrument model (MS:1000031)."^^xsd:string ; rdfs:label "vendor"^^xsd:string ; owl:deprecated true . obo:MS_1000031 obo:IAO_0000115 "Instrument model name not including the vendor's name."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000031"^^xsd:string ; a owl:Class ; rdfs:label "instrument model"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000463 ] . obo:MS_1000032 obo:IAO_0000115 "Free text description of a single customization made to the instrument; for several modifications, use several entries."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000032"^^xsd:string ; a owl:Class ; rdfs:label "customization"^^xsd:string ; rdfs:subClassOf obo:MS_1000496, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000033 obo:IAO_0000115 "The removal of isotope peaks to represent the fragment ion as one data point and is commonly done to reduce complexity. It is done in conjunction with the charge state deconvolution."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000033"^^xsd:string ; a owl:Class ; rdfs:label "deisotoping"^^xsd:string ; rdfs:subClassOf obo:MS_1000543 . obo:MS_1000034 obo:IAO_0000115 "The determination of the mass of an ion based on the mass spectral peaks that represent multiple-charge ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000034"^^xsd:string ; a owl:Class ; rdfs:label "charge deconvolution"^^xsd:string ; rdfs:subClassOf obo:MS_1000543 . obo:MS_1000035 obo:IAO_0000115 "Spectral peak processing conducted on the acquired data to convert profile data to centroided data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000035"^^xsd:string ; a owl:Class ; rdfs:label "peak picking"^^xsd:string ; rdfs:subClassOf obo:MS_1000543 . obo:MS_1000036 obo:IAO_0000115 "OBSOLETE."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000036"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because ."^^xsd:string ; rdfs:label "scan mode"^^xsd:string ; owl:deprecated true . obo:MS_1000037 obo:IAO_0000115 "OBSOLETE Terms to describe the polarity setting of the instrument."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000037"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was redundant with the Pato Ontology term polarity (UO:0002186)."^^xsd:string ; rdfs:label "polarity"^^xsd:string ; owl:deprecated true . obo:MS_1000038 obo:IAO_0000115 "OBSOLETE Acquisition time in minutes."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000038"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was redundant with Unit Ontology minute (UO:0000031)."^^xsd:string ; rdfs:label "minute"^^xsd:string ; owl:deprecated true . obo:MS_1000039 obo:IAO_0000115 "OBSOLETE Acquisition time in seconds."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000039"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was redundant with Unit Ontology second (UO:0000010)."^^xsd:string ; rdfs:label "second"^^xsd:string ; owl:deprecated true . obo:MS_1000040 obo:IAO_0000115 "Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated."^^xsd:string ; oboInOwl:hasExactSynonym "Th"^^xsd:string, "mass-to-charge ratio"^^xsd:string, "thomson"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000040"^^xsd:string ; a owl:Class ; rdfs:label "m/z"^^xsd:string ; rdfs:subClassOf obo:UO_0000000 . obo:MS_1000041 obo:IAO_0000115 "Number of net charges, positive or negative, on an ion."^^xsd:string ; oboInOwl:hasExactSynonym "z"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000041"^^xsd:string ; a owl:Class ; rdfs:label "charge state"^^xsd:string ; rdfs:subClassOf obo:MS_1000455, obo:MS_1000507, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1000042 obo:IAO_0000115 "Intensity of ions as measured by the height or area of a peak in a mass spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000042"^^xsd:string ; a owl:Class ; rdfs:label "peak intensity"^^xsd:string ; rdfs:subClassOf obo:MS_1000455, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000131 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000132 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000814 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000905 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000269 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000231 ] . obo:MS_1000043 obo:IAO_0000115 "Intensity units are commonly arbitrary. Detected in counts per second (cps) when using counting detectors, but measured in volts when using analog detectors."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000043"^^xsd:string ; a owl:Class ; rdfs:label "intensity unit"^^xsd:string ; rdfs:subClassOf obo:UO_0000000 . obo:MS_1000044 obo:IAO_0000115 "Fragmentation method used for dissociation or fragmentation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "Activation Method"^^xsd:string ; oboInOwl:id "MS:1000044"^^xsd:string ; a owl:Class ; rdfs:label "dissociation method"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000456 ] . obo:MS_1000045 obo:IAO_0000115 "Energy for an ion experiencing collision with a stationary gas particle resulting in dissociation of the ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000045"^^xsd:string ; a owl:Class ; rdfs:label "collision energy"^^xsd:string ; rdfs:subClassOf obo:MS_1000510, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000266 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000046 obo:IAO_0000115 "OBSOLETE Energy units are represented in either eV or Joules."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000046"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was redundant with the Unit Ontology term energy unit (UO:0000111)."^^xsd:string ; rdfs:label "energy unit"^^xsd:string ; rdfs:subClassOf obo:UO_0000000 ; owl:deprecated true . obo:MS_1000047 obo:IAO_0000115 "State if the sample is in emulsion form."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000047"^^xsd:string ; a owl:Class ; rdfs:label "emulsion"^^xsd:string ; rdfs:subClassOf obo:MS_1000003 . obo:MS_1000048 obo:IAO_0000115 "State if the sample is in gaseous form."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000048"^^xsd:string ; a owl:Class ; rdfs:label "gaseous sample state"^^xsd:string ; rdfs:subClassOf obo:MS_1000003 . obo:MS_1000049 obo:IAO_0000115 "State if the sample is in liquid form."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000049"^^xsd:string ; a owl:Class ; rdfs:label "liquid sample state"^^xsd:string ; rdfs:subClassOf obo:MS_1000003 . obo:MS_1000050 obo:IAO_0000115 "State if the sample is in solid form."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000050"^^xsd:string ; a owl:Class ; rdfs:label "solid sample state"^^xsd:string ; rdfs:subClassOf obo:MS_1000003 . obo:MS_1000051 obo:IAO_0000115 "State if the sample is in solution form."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000051"^^xsd:string ; a owl:Class ; rdfs:label "solution"^^xsd:string ; rdfs:subClassOf obo:MS_1000003 . obo:MS_1000052 obo:IAO_0000115 "State if the sample is in suspension form."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000052"^^xsd:string ; a owl:Class ; rdfs:label "suspension"^^xsd:string ; rdfs:subClassOf obo:MS_1000003 . obo:MS_1000053 obo:IAO_0000115 "Sample batch lot identifier."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000053"^^xsd:string ; a owl:Class ; rdfs:label "sample batch"^^xsd:string ; rdfs:subClassOf obo:MS_1000548, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000054 obo:IAO_0000115 "OBSOLETE Chromatographic conditions used to obtain the sample."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000054"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "chromatography"^^xsd:string ; owl:deprecated true . obo:MS_1000055 obo:IAO_0000115 "Fast atom bombardment ionization in which the analyte in solution is entrained in a flowing liquid matrix."^^xsd:string ; oboInOwl:hasExactSynonym "CF-FAB"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000055"^^xsd:string ; a owl:Class ; rdfs:label "continuous flow fast atom bombardment"^^xsd:string ; rdfs:subClassOf obo:MS_1000007 . obo:MS_1000056 obo:IAO_0000115 "The sample is directly inserted into the ion source, usually on the end of a heatable probe."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000056"^^xsd:string ; a owl:Class ; rdfs:label "direct inlet"^^xsd:string ; rdfs:subClassOf obo:MS_1000007 . obo:MS_1000057 obo:IAO_0000115 "Inlet used for introducing the liquid sample into an electrospray ionization source."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000057"^^xsd:string ; a owl:Class ; rdfs:label "electrospray inlet"^^xsd:string ; rdfs:subClassOf obo:MS_1000007 . obo:MS_1000058 obo:IAO_0000115 "Sample is directly injected or infused into the ionization source."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000058"^^xsd:string ; a owl:Class ; rdfs:label "flow injection analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1000007 . obo:MS_1000059 obo:IAO_0000115 "A gas discharge ion source in which the energy to the plasma is supplied by electromagnetic induction."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000059"^^xsd:string ; a owl:Class ; rdfs:label "inductively coupled plasma"^^xsd:string ; rdfs:subClassOf obo:MS_1000007 . obo:MS_1000060 obo:IAO_0000115 "The continuous flow of solution of a sample into the ionization source."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000060"^^xsd:string ; a owl:Class ; rdfs:label "infusion"^^xsd:string ; rdfs:subClassOf obo:MS_1000007 . obo:MS_1000061 obo:IAO_0000115 "A device that separates carrier gas from gaseous analyte molecules on the basis of diffusivity."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000061"^^xsd:string ; a owl:Class ; rdfs:label "jet separator"^^xsd:string ; rdfs:subClassOf obo:MS_1000007 . obo:MS_1000062 obo:IAO_0000115 "A device to separate carrier molecules from analyte molecules on the basis of ease of diffusion across a semipermeable membrane."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000062"^^xsd:string ; a owl:Class ; rdfs:label "membrane separator"^^xsd:string ; rdfs:subClassOf obo:MS_1000007 . obo:MS_1000063 obo:IAO_0000115 "Continuous moving surface in the form of a belt which passes through an ion source carrying analyte molecules."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000063"^^xsd:string ; a owl:Class ; rdfs:label "moving belt"^^xsd:string ; rdfs:subClassOf obo:MS_1000007 . obo:MS_1000064 obo:IAO_0000115 "Continuous moving surface in the form of a wire which passes through an ion source carrying analyte molecules."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000064"^^xsd:string ; a owl:Class ; rdfs:label "moving wire"^^xsd:string ; rdfs:subClassOf obo:MS_1000007 . obo:MS_1000065 obo:IAO_0000115 "A division of flowing stream of liquid into two streams."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000065"^^xsd:string ; a owl:Class ; rdfs:label "open split"^^xsd:string ; rdfs:subClassOf obo:MS_1000007 . obo:MS_1000066 obo:IAO_0000115 "Method for generating ions from a solution of an analyte."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000066"^^xsd:string ; a owl:Class ; rdfs:label "particle beam"^^xsd:string ; rdfs:subClassOf obo:MS_1000007 . obo:MS_1000067 obo:IAO_0000115 "A sample inlet method involving a reservoir."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000067"^^xsd:string ; a owl:Class ; rdfs:label "reservoir"^^xsd:string ; rdfs:subClassOf obo:MS_1000007 . obo:MS_1000068 obo:IAO_0000115 "A disc composed of a flexible material that seals the entrance to the reservoir. Can also be entrance to the vacuum chamber."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000068"^^xsd:string ; a owl:Class ; rdfs:label "septum"^^xsd:string ; rdfs:subClassOf obo:MS_1000007 . obo:MS_1000069 obo:IAO_0000115 "A method for generating gas phase ions from a solution of an analyte by rapid heating of the sample."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000069"^^xsd:string ; a owl:Class ; rdfs:label "thermospray inlet"^^xsd:string ; rdfs:subClassOf obo:MS_1000007 . obo:MS_1000070 obo:IAO_0000115 "Chemical ionization that takes place at atmospheric pressure as opposed to the reduced pressure is normally used for chemical ionization."^^xsd:string ; oboInOwl:hasExactSynonym "APCI"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000070"^^xsd:string ; a owl:Class ; rdfs:label "atmospheric pressure chemical ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000240 . obo:MS_1000071 obo:IAO_0000115 "The formation of a new ion by the reaction of a neutral species with an ion. The process may involve transfer of an electron, a proton or other charged species between the reactants. When a positive ion results from chemical ionization the term may be used without qualification. When a negative ion results the term negative ion chemical ionization should be used. Note that this term is not synonymous with chemi-ionization."^^xsd:string ; oboInOwl:hasExactSynonym "CI"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000071"^^xsd:string ; a owl:Class ; rdfs:label "chemical ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000072 obo:IAO_0000115 "OBSOLETE The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended."^^xsd:string ; oboInOwl:hasExactSynonym "EI"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000072"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was replaced by electron ionization (MS:1000389)."^^xsd:string ; rdfs:label "Electronic Ionization"^^xsd:string ; owl:deprecated true . obo:MS_1000073 obo:IAO_0000115 "A process in which ionized species in the gas phase are produced from an analyte-containing solution via highly charged fine droplets, by means of spraying the solution from a narrow-bore needle tip at atmospheric pressure in the presence of a high electric field. When a pressurized gas is used to aid in the formation of a stable spray, the term pneumatically assisted electrospray ionization is used. The term ion spray is not recommended."^^xsd:string ; oboInOwl:hasExactSynonym "ESI"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000073"^^xsd:string ; a owl:Class ; rdfs:label "electrospray ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000074 obo:IAO_0000115 "The ionization of any species by the interaction of a focused beam of neutral atoms having a translational energy of several thousand eV with a sample that is typically dissolved in a solvent matrix. See also secondary ionization."^^xsd:string ; oboInOwl:hasExactSynonym "FAB"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000074"^^xsd:string ; a owl:Class ; rdfs:label "fast atom bombardment ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000075 obo:IAO_0000115 "The formation of gas-phase ions from molecules that are present in a solid or solvent matrix that is irradiated with a pulsed laser. See also laser desorption/ionization."^^xsd:string ; oboInOwl:hasExactSynonym "MALDI"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000075"^^xsd:string ; a owl:Class ; rdfs:label "matrix-assisted laser desorption ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000247 . obo:MS_1000076 obo:IAO_0000115 "OBSOLETE."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000076"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was replaced by negative scan (MS:1000129)."^^xsd:string ; rdfs:label "negative ion mode"^^xsd:string ; owl:deprecated true . obo:MS_1000077 obo:IAO_0000115 "OBSOLETE."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000077"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was replaced by positive scan (MS:1000130)."^^xsd:string ; rdfs:label "positive ion mode"^^xsd:string ; owl:deprecated true . obo:MS_1000078 obo:IAO_0000115 "A linear ion trap mass spectrometer where ions are ejected along the axis of the analyzer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000078"^^xsd:string ; a owl:Class ; rdfs:label "axial ejection linear ion trap"^^xsd:string ; rdfs:subClassOf obo:MS_1000291 . obo:MS_1000079 obo:IAO_0000115 "A mass spectrometer based on the principle of ion cyclotron resonance in which an ion in a magnetic field moves in a circular orbit at a frequency characteristic of its m/z value. Ions are coherently excited to a larger radius orbit using a pulse of radio frequency energy and their image charge is detected on receiver plates as a time domain signal. Fourier transformation of the time domain signal results in a frequency domain signal which is converted to a mass spectrum based in the inverse relationship between frequency and m/z."^^xsd:string ; oboInOwl:hasExactSynonym "FT_ICR"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000079"^^xsd:string ; a owl:Class ; rdfs:label "fourier transform ion cyclotron resonance mass spectrometer"^^xsd:string ; rdfs:subClassOf obo:MS_1000443 . obo:MS_1000080 obo:IAO_0000115 "A device that produces a magnetic field perpendicular to a charged particle beam that deflects the beam to an extent that is proportional to the particle momentum per unit charge. For a monoenergetic beam, the deflection is proportional to m/z."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000080"^^xsd:string ; a owl:Class ; rdfs:label "magnetic sector"^^xsd:string ; rdfs:subClassOf obo:MS_1000443 . obo:MS_1000081 obo:IAO_0000115 "A mass spectrometer that consists of four parallel rods whose centers form the corners of a square and whose opposing poles are connected. The voltage applied to the rods is a superposition of a static potential and a sinusoidal radio frequency potential. The motion of an ion in the x and y dimensions is described by the Matthieu equation whose solutions show that ions in a particular m/z range can be transmitted along the z axis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000081"^^xsd:string ; a owl:Class ; rdfs:label "quadrupole"^^xsd:string ; rdfs:subClassOf obo:MS_1000443 . obo:MS_1000082 obo:IAO_0000115 "Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials."^^xsd:string ; oboInOwl:hasExactSynonym "Paul Ion trap"^^xsd:string, "QIT"^^xsd:string, "Quistor"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000082"^^xsd:string ; a owl:Class ; rdfs:label "quadrupole ion trap"^^xsd:string ; rdfs:subClassOf obo:MS_1000264 . obo:MS_1000083 obo:IAO_0000115 "A linear ion trap mass spectrometer where ions are ejected along the radius of the analyzer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000083"^^xsd:string ; a owl:Class ; rdfs:label "radial ejection linear ion trap"^^xsd:string ; rdfs:subClassOf obo:MS_1000291 . obo:MS_1000084 obo:IAO_0000115 "Instrument that separates ions by m/z in a field-free region after acceleration to a fixed acceleration energy."^^xsd:string ; oboInOwl:hasExactSynonym "TOF"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000084"^^xsd:string ; a owl:Class ; rdfs:label "time-of-flight"^^xsd:string ; rdfs:subClassOf obo:MS_1000443 . obo:MS_1000085 obo:IAO_0000115 "An attribute of resolution when recording the detector response in absence of the analyte."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000085"^^xsd:string ; a owl:Class ; rdfs:label "baseline"^^xsd:string ; rdfs:subClassOf obo:MS_1000012 . obo:MS_1000086 obo:IAO_0000115 "A measure of resolution represented as width of the peak at half peak height."^^xsd:string ; oboInOwl:hasExactSynonym "FWHM"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000086"^^xsd:string ; a owl:Class ; rdfs:label "full width at half-maximum"^^xsd:string ; rdfs:subClassOf obo:MS_1000012 . obo:MS_1000087 obo:IAO_0000115 "An attribute of resolution when the ratio between adjacent signals is 10% of the signal height."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000087"^^xsd:string ; a owl:Class ; rdfs:label "ten percent valley"^^xsd:string ; rdfs:subClassOf obo:MS_1000012 . obo:MS_1000088 obo:IAO_0000115 "OBSOLETE When resolution is constant with respect to m/z."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000088"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term resolution type was made obsolete."^^xsd:string ; rdfs:label "constant"^^xsd:string ; owl:deprecated true . obo:MS_1000089 obo:IAO_0000115 "OBSOLETE When resolution is proportional with respect to m/z."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000089"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term resolution type was made obsolete."^^xsd:string ; rdfs:label "proportional"^^xsd:string ; owl:deprecated true . obo:MS_1000090 obo:IAO_0000115 "OBSOLETE A variation of instrument where a selected mass is scanned."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000090"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term Scan Function was made obsolete."^^xsd:string ; rdfs:label "mass scan"^^xsd:string ; owl:deprecated true . obo:MS_1000091 obo:IAO_0000115 "OBSOLETE Please see Single Ion Monitoring."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000091"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term Scan Function was made obsolete."^^xsd:string ; rdfs:label "selected ion detection"^^xsd:string ; owl:deprecated true . obo:MS_1000092 obo:IAO_0000115 "High to low direction in terms of m/z of the scan for scanning analyzers."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000092"^^xsd:string ; a owl:Class ; rdfs:label "decreasing m/z scan"^^xsd:string ; rdfs:subClassOf obo:MS_1000018 . obo:MS_1000093 obo:IAO_0000115 "Low to high direction in terms of m/z of the scan for scanning analyzers."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000093"^^xsd:string ; a owl:Class ; rdfs:label "increasing m/z scan"^^xsd:string ; rdfs:subClassOf obo:MS_1000018 . obo:MS_1000094 obo:IAO_0000115 "The mass scan is done in exponential mode."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000094"^^xsd:string ; a owl:Class ; rdfs:label "exponential"^^xsd:string ; rdfs:subClassOf obo:MS_1000019 . obo:MS_1000095 obo:IAO_0000115 "OBSOLETE The mass scan is done in linear mode."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000095"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was redundant with the Pato Ontology term linear (UO:0001199)."^^xsd:string ; rdfs:label "linear"^^xsd:string ; rdfs:subClassOf obo:MS_1000019 ; owl:deprecated true . obo:MS_1000096 obo:IAO_0000115 "The mass scan is done in quadratic mode."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000096"^^xsd:string ; a owl:Class ; rdfs:label "quadratic"^^xsd:string ; rdfs:subClassOf obo:MS_1000019 . obo:MS_1000097 obo:IAO_0000115 "OBSOLETE A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000097"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "constant neutral mass loss"^^xsd:string ; owl:deprecated true . obo:MS_1000098 obo:IAO_0000115 "OBSOLETE Data acquired when monitoring the ion current of a few specific m/z values. Remap to MS:1000205 -Selected Ion Monitoring."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000098"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "multiple ion monitoring"^^xsd:string ; owl:deprecated true . obo:MS_1000099 obo:IAO_0000115 "OBSOLETE This term is not recommended. See Selected Reaction Monitoring."^^xsd:string ; oboInOwl:hasExactSynonym "MRM"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000099"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was merged with selected reaction monitoring (MS:1000206)."^^xsd:string ; rdfs:label "multiple reaction monitoring"^^xsd:string ; owl:deprecated true . obo:MS_1000100 obo:IAO_0000115 "OBSOLETE The specific scan function or process that will record a precursor ion spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000100"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "precursor ion scan"^^xsd:string ; owl:deprecated true . obo:MS_1000101 obo:IAO_0000115 "OBSOLETE The specific scan function or process that records product ion spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000101"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "product ion scan"^^xsd:string ; owl:deprecated true . obo:MS_1000102 obo:IAO_0000115 "OBSOLETE The operation of a mass spectrometer to monitor a single ion rather than scanning entire mass spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000102"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was replaced by single ion monitoring (MS:100205)."^^xsd:string ; rdfs:label "single ion monitoring"^^xsd:string ; owl:deprecated true . obo:MS_1000103 obo:IAO_0000115 "OBSOLETE This term is not recommended. See Selected Reaction Monitoring."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000103"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was replaced by selected reaction monitoring (MS:1000206)."^^xsd:string ; rdfs:label "single reaction monitoring"^^xsd:string ; owl:deprecated true . obo:MS_1000104 obo:IAO_0000115 "OBSOLETE None."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000104"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because ."^^xsd:string ; rdfs:label "None ??"^^xsd:string ; owl:deprecated true . obo:MS_1000105 obo:IAO_0000115 "Reflectron is off."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000105"^^xsd:string ; a owl:Class ; rdfs:label "reflectron off"^^xsd:string ; rdfs:subClassOf obo:MS_1000021 . obo:MS_1000106 obo:IAO_0000115 "Reflectron is on."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000106"^^xsd:string ; a owl:Class ; rdfs:label "reflectron on"^^xsd:string ; rdfs:subClassOf obo:MS_1000021 . obo:MS_1000107 obo:IAO_0000115 "A horn-shaped (or cone-shaped) continuous dynode particle multiplier. The ion strikes the inner surface of the device and induces the production of secondary electrons that in turn impinge on the inner surfaces to produce more secondary electrons. This avalanche effect produces an increase in signal in the final measured current pulse."^^xsd:string ; oboInOwl:hasExactSynonym "Channeltron Detector"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000107"^^xsd:string ; a owl:Class ; rdfs:label "channeltron"^^xsd:string ; rdfs:subClassOf obo:MS_1000026 . obo:MS_1000108 obo:IAO_0000115 "A surface that is held at high potential so that ions striking the surface produce electrons that are subsequently detected."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000108"^^xsd:string ; a owl:Class ; rdfs:label "conversion dynode electron multiplier"^^xsd:string ; rdfs:subClassOf obo:MS_1000346 . obo:MS_1000109 obo:IAO_0000115 "A detector in which ions strike a conversion dynode to produce electrons that in turn generate photons through a phosphorescent screen that are detected by a photomultiplier."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "ion-to-photon detector"^^xsd:string ; oboInOwl:id "MS:1000109"^^xsd:string ; a owl:Class ; rdfs:label "conversion dynode photomultiplier"^^xsd:string ; rdfs:subClassOf obo:MS_1000346 . obo:MS_1000110 obo:IAO_0000115 "Detector consisting of a conversion dynode, scintillator and photomultiplier. The metal knob at high potential emits secondary electrons when ions impinge on the surface. The secondary electrons are accelerated onto the scintillator that produces light that is then detected by the photomultiplier detector."^^xsd:string ; oboInOwl:hasExactSynonym "Daly"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000110"^^xsd:string ; a owl:Class ; rdfs:label "daly detector"^^xsd:string ; rdfs:subClassOf obo:MS_1000026 . obo:MS_1000111 obo:IAO_0000115 "A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons."^^xsd:string ; oboInOwl:hasExactSynonym "EMT"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000111"^^xsd:string ; a owl:Class ; rdfs:label "electron multiplier tube"^^xsd:string ; rdfs:subClassOf obo:MS_1000253 . obo:MS_1000112 obo:IAO_0000115 "A conducting cup or chamber that intercepts a charged particle beam and is electrically connected to a current measuring device."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000112"^^xsd:string ; a owl:Class ; rdfs:label "faraday cup"^^xsd:string ; rdfs:subClassOf obo:MS_1000026 . obo:MS_1000113 obo:IAO_0000115 "An array of detectors for spatially disperse ion beams in which all ions simultaneously impinge on the detector plane."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000113"^^xsd:string ; a owl:Class ; rdfs:label "focal plane array"^^xsd:string ; rdfs:subClassOf obo:MS_1000348 . obo:MS_1000114 obo:IAO_0000115 "A thin plate that contains a closely spaced array of channels that each act as a continuous dynode particle multiplier. A charged particle, fast neutral particle, or photon striking the plate causes a cascade of secondary electrons that ultimately exits the opposite side of the plate."^^xsd:string ; oboInOwl:hasExactSynonym "multichannel plate"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000114"^^xsd:string ; a owl:Class ; rdfs:label "microchannel plate detector"^^xsd:string ; rdfs:subClassOf obo:MS_1000345 . obo:MS_1000115 obo:IAO_0000115 "A detector system commonly used in inductively coupled plasma mass spectrometers."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000115"^^xsd:string ; a owl:Class ; rdfs:label "multi-collector"^^xsd:string ; rdfs:subClassOf obo:MS_1000026 . obo:MS_1000116 obo:IAO_0000115 "A detector for conversion of the ion/electron signal into photon(s) which are then amplified and detected."^^xsd:string ; oboInOwl:hasExactSynonym "PMT"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000116"^^xsd:string ; a owl:Class ; rdfs:label "photomultiplier"^^xsd:string ; rdfs:subClassOf obo:MS_1000026 . obo:MS_1000117 obo:IAO_0000115 "Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an electronic integrated circuit (i/c) that converts continuous signals to discrete digital numbers."^^xsd:string ; oboInOwl:hasExactSynonym "ADC"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000117"^^xsd:string ; a owl:Class ; rdfs:label "analog-digital converter"^^xsd:string ; rdfs:subClassOf obo:MS_1000027 . obo:MS_1000118 obo:IAO_0000115 "Definition to do."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000118"^^xsd:string ; a owl:Class ; rdfs:label "pulse counting"^^xsd:string ; rdfs:subClassOf obo:MS_1000027 . obo:MS_1000119 obo:IAO_0000115 "A device for converting a signal of sporadic pluses into a digital representation of their time indices."^^xsd:string ; oboInOwl:hasExactSynonym "TDC"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000119"^^xsd:string ; a owl:Class ; rdfs:label "time-digital converter"^^xsd:string ; rdfs:subClassOf obo:MS_1000027 . obo:MS_1000120 obo:IAO_0000115 "A detector acquisition mode used for detecting transient signals."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000120"^^xsd:string ; a owl:Class ; rdfs:label "transient recorder"^^xsd:string ; rdfs:subClassOf obo:MS_1000027 . obo:MS_1000121 obo:IAO_0000115 "The brand of instruments from the joint venture between Applied Biosystems and MDS Analytical Technologies (formerly MDS SCIEX). Previously branded as \"Applied Biosystems|MDS SCIEX\"."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "Applied Biosystems|MDS SCIEX"^^xsd:string ; oboInOwl:id "MS:1000121"^^xsd:string ; a owl:Class ; rdfs:label "SCIEX instrument model"^^xsd:string ; rdfs:subClassOf obo:MS_1000031 . obo:MS_1000122 obo:IAO_0000115 "Bruker Daltonics' instrument model."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000122"^^xsd:string ; a owl:Class ; rdfs:label "Bruker Daltonics instrument model"^^xsd:string ; rdfs:subClassOf obo:MS_1000031 . obo:MS_1000123 obo:IAO_0000115 "IonSpec corporation instrument model."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000123"^^xsd:string ; a owl:Class ; rdfs:label "IonSpec instrument model"^^xsd:string ; rdfs:subClassOf obo:MS_1000489 . obo:MS_1000124 obo:IAO_0000115 "Shimadzu corporation instrument model."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000124"^^xsd:string ; a owl:Class ; rdfs:label "Shimadzu instrument model"^^xsd:string ; rdfs:subClassOf obo:MS_1000031 . obo:MS_1000125 obo:IAO_0000115 "ThermoFinnigan from Thermo Electron Corporation instrument model."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000125"^^xsd:string ; a owl:Class ; rdfs:label "Thermo Finnigan instrument model"^^xsd:string ; rdfs:subClassOf obo:MS_1000483 . obo:MS_1000126 obo:IAO_0000115 "Waters Corporation instrument model."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000126"^^xsd:string ; a owl:Class ; rdfs:label "Waters instrument model"^^xsd:string ; rdfs:subClassOf obo:MS_1000031 . obo:MS_1000127 obo:IAO_0000115 "Processing of profile data to produce spectra that contains discrete peaks of zero width. Often used to reduce the size of dataset."^^xsd:string ; oboInOwl:hasExactSynonym "Discrete Mass Spectrum"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000127"^^xsd:string ; a owl:Class ; rdfs:label "centroid spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1000525 . obo:MS_1000128 obo:IAO_0000115 "A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis."^^xsd:string ; oboInOwl:hasExactSynonym "Continuum Mass Spectrum"^^xsd:string, "continuous mass spectrum"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000128"^^xsd:string ; a owl:Class ; rdfs:label "profile spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1000525 . obo:MS_1000129 obo:IAO_0000115 "Polarity of the scan is negative."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000129"^^xsd:string ; a owl:Class ; rdfs:label "negative scan"^^xsd:string ; rdfs:subClassOf obo:MS_1000465, obo:MS_1000808 . obo:MS_1000130 obo:IAO_0000115 "Polarity of the scan is positive."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000130"^^xsd:string ; a owl:Class ; rdfs:label "positive scan"^^xsd:string ; rdfs:subClassOf obo:MS_1000465, obo:MS_1000808 . obo:MS_1000131 obo:IAO_0000115 "The number of counted events observed in one or a group of elements of a detector."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000131"^^xsd:string ; a owl:Class ; rdfs:label "number of detector counts"^^xsd:string ; rdfs:subClassOf obo:MS_1000043 . obo:MS_1000132 obo:IAO_0000115 "The magnitude of a peak or measurement element expressed in terms of the percentage of the magnitude of the base peak intensity."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000132"^^xsd:string ; a owl:Class ; rdfs:label "percent of base peak"^^xsd:string ; rdfs:subClassOf obo:MS_1000043, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000133 obo:IAO_0000115 "The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended."^^xsd:string ; oboInOwl:hasExactSynonym "CAD"^^xsd:string, "CID"^^xsd:string, "collisionally activated dissociation"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000133"^^xsd:string ; a owl:Class ; rdfs:label "collision-induced dissociation"^^xsd:string ; rdfs:subClassOf obo:MS_1000044 . obo:MS_1000134 obo:IAO_0000115 "The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization."^^xsd:string ; oboInOwl:hasExactSynonym "PD"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000134"^^xsd:string ; a owl:Class ; rdfs:label "plasma desorption"^^xsd:string ; rdfs:subClassOf obo:MS_1000044 . obo:MS_1000135 obo:IAO_0000115 "A technique specific to reflectron time-of-flight mass spectrometers where product ions of metastable transitions or collision-induced dissociations generated in the drift tube prior to entering the reflectron are m/z separated to yield product ion spectra."^^xsd:string ; oboInOwl:hasExactSynonym "PSD"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000135"^^xsd:string ; a owl:Class ; rdfs:label "post-source decay"^^xsd:string ; rdfs:subClassOf obo:MS_1000044 . obo:MS_1000136 obo:IAO_0000115 "Fragmentation that results from the collision of an ion with a surface."^^xsd:string ; oboInOwl:hasExactSynonym "SID"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000136"^^xsd:string ; a owl:Class ; rdfs:label "surface-induced dissociation"^^xsd:string ; rdfs:subClassOf obo:MS_1000044 . obo:MS_1000137 obo:IAO_0000115 "OBSOLETE A non-SI unit of energy (eV) defined as the energy acquired by a particle containing one unit of charge through a potential difference of one volt. An electron-volt is equal to 1.602 176 53(14) x 10^-19 J."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000137"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was redundant with the Unit Ontology term electron volt (UO:0000266)."^^xsd:string ; rdfs:label "electron volt"^^xsd:string ; owl:deprecated true . obo:MS_1000138 obo:IAO_0000115 "Instrument setting, expressed in percent, for adjusting collisional energies of ions in an effort to provide equivalent excitation of all ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000138"^^xsd:string ; a owl:Class ; rdfs:label "normalized collision energy"^^xsd:string ; rdfs:subClassOf obo:MS_1000510, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000187 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000139 obo:IAO_0000115 "Applied Biosystems/MDS SCIEX Q 4000 TRAP MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000139"^^xsd:string ; a owl:Class ; rdfs:label "4000 QTRAP"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1000140 obo:IAO_0000115 "Applied Biosystems/MDS SCIEX 4700 Proteomics Analyzer MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000140"^^xsd:string ; a owl:Class ; rdfs:label "4700 Proteomics Analyzer"^^xsd:string ; rdfs:subClassOf obo:MS_1000495 . obo:MS_1000141 obo:IAO_0000115 "Bruker Daltonics' apex IV: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000141"^^xsd:string ; a owl:Class ; rdfs:label "apex IV"^^xsd:string ; rdfs:subClassOf obo:MS_1001556 . obo:MS_1000142 obo:IAO_0000115 "Bruker Daltonics' apex Q: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000142"^^xsd:string ; a owl:Class ; rdfs:label "apex Q"^^xsd:string ; rdfs:subClassOf obo:MS_1001556 . obo:MS_1000143 obo:IAO_0000115 "Applied Biosystems/MDS SCIEX API 150EX MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000143"^^xsd:string ; a owl:Class ; rdfs:label "API 150EX"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1000144 obo:IAO_0000115 "Applied Biosystems/MDS SCIEX API 150EX Prep MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000144"^^xsd:string ; a owl:Class ; rdfs:label "API 150EX Prep"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1000145 obo:IAO_0000115 "Applied Biosystems/MDS SCIEX API 2000 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000145"^^xsd:string ; a owl:Class ; rdfs:label "API 2000"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1000146 obo:IAO_0000115 "Applied Biosystems/MDS SCIEX API 3000 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000146"^^xsd:string ; a owl:Class ; rdfs:label "API 3000"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1000147 obo:IAO_0000115 "Applied Biosystems/MDS SCIEX API 4000 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000147"^^xsd:string ; a owl:Class ; rdfs:label "API 4000"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1000148 obo:IAO_0000115 "Bruker Daltonics' autoflex II: MALDI TOF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000148"^^xsd:string ; a owl:Class ; rdfs:label "autoflex II"^^xsd:string ; rdfs:subClassOf obo:MS_1001534 . obo:MS_1000149 obo:IAO_0000115 "Bruker Daltonics' autoflex TOF/TOF MS: MALDI TOF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000149"^^xsd:string ; a owl:Class ; rdfs:label "autoflex TOF/TOF"^^xsd:string ; rdfs:subClassOf obo:MS_1001534 . obo:MS_1000150 obo:IAO_0000115 "Waters magnetic sector based AutoSpec Ultima NT MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000150"^^xsd:string ; a owl:Class ; rdfs:label "Auto Spec Ultima NT"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1000151 obo:IAO_0000115 "Bruker Daltonics' BioTOF II: ESI TOF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000151"^^xsd:string ; a owl:Class ; rdfs:label "BioTOF II"^^xsd:string ; rdfs:subClassOf obo:MS_1001535 . obo:MS_1000152 obo:IAO_0000115 "Bruker Daltonics' BioTOF-Q: ESI Q-TOF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000152"^^xsd:string ; a owl:Class ; rdfs:label "BioTOF-Q"^^xsd:string ; rdfs:subClassOf obo:MS_1001535 . obo:MS_1000153 obo:IAO_0000115 "ThermoFinnigan DELTA plusAdvantage MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000153"^^xsd:string ; a owl:Class ; rdfs:label "DELTA plusAdvantage"^^xsd:string ; rdfs:subClassOf obo:MS_1000125 . obo:MS_1000154 obo:IAO_0000115 "ThermoFinnigan DELTAplusXP MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000154"^^xsd:string ; a owl:Class ; rdfs:label "DELTAplusXP"^^xsd:string ; rdfs:subClassOf obo:MS_1000125 . obo:MS_1000155 obo:IAO_0000115 "OBSOLETE ThermoFinnigan ELEMENT2 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000155"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "ELEMENT2"^^xsd:string ; owl:deprecated true . obo:MS_1000156 obo:IAO_0000115 "Bruker Daltonics' esquire 4000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000156"^^xsd:string ; a owl:Class ; rdfs:label "esquire 4000"^^xsd:string ; rdfs:subClassOf obo:MS_1001533 . obo:MS_1000157 obo:IAO_0000115 "Bruker Daltonics' esquire 6000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000157"^^xsd:string ; a owl:Class ; rdfs:label "esquire 6000"^^xsd:string ; rdfs:subClassOf obo:MS_1001533 . obo:MS_1000158 obo:IAO_0000115 "IonSpec Explorer MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000158"^^xsd:string ; a owl:Class ; rdfs:label "explorer"^^xsd:string ; rdfs:subClassOf obo:MS_1000123 . obo:MS_1000159 obo:IAO_0000115 "Waters oa-ToF based GCT."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000159"^^xsd:string ; a owl:Class ; rdfs:label "GCT"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1000160 obo:IAO_0000115 "Bruker Daltonics' HCT: ESI Q-TOF, Nanospray, APCI, APPI."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000160"^^xsd:string ; a owl:Class ; rdfs:label "HCT"^^xsd:string ; rdfs:subClassOf obo:MS_1000697 . obo:MS_1000161 obo:IAO_0000115 "Bruker Daltonics' HCTplus: ESI Q-TOF, Nanospray, APCI, APPI."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000161"^^xsd:string ; a owl:Class ; rdfs:label "HCTplus"^^xsd:string ; rdfs:subClassOf obo:MS_1000697 . obo:MS_1000162 obo:IAO_0000115 "IonSpec HiResESI MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000162"^^xsd:string ; a owl:Class ; rdfs:label "HiRes ESI"^^xsd:string ; rdfs:subClassOf obo:MS_1000123 . obo:MS_1000163 obo:IAO_0000115 "IonSpec HiResMALDI MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000163"^^xsd:string ; a owl:Class ; rdfs:label "HiRes MALDI"^^xsd:string ; rdfs:subClassOf obo:MS_1000123 . obo:MS_1000164 obo:IAO_0000115 "Waters IsoPrime MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000164"^^xsd:string ; a owl:Class ; rdfs:label "IsoPrime"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1000165 obo:IAO_0000115 "Waters IsoProbe MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000165"^^xsd:string ; a owl:Class ; rdfs:label "IsoProbe"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1000166 obo:IAO_0000115 "Waters IsoProbe T MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000166"^^xsd:string ; a owl:Class ; rdfs:label "IsoProbe T"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1000167 obo:IAO_0000115 "ThermoFinnigan LCQ Advantage MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000167"^^xsd:string ; a owl:Class ; rdfs:label "LCQ Advantage"^^xsd:string ; rdfs:subClassOf obo:MS_1000125 . obo:MS_1000168 obo:IAO_0000115 "ThermoFinnigan LCQ Classic MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000168"^^xsd:string ; a owl:Class ; rdfs:label "LCQ Classic"^^xsd:string ; rdfs:subClassOf obo:MS_1000125 . obo:MS_1000169 obo:IAO_0000115 "ThermoFinnigan LCQ Deca XP Plus MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000169"^^xsd:string ; a owl:Class ; rdfs:label "LCQ Deca XP Plus"^^xsd:string ; rdfs:subClassOf obo:MS_1000125 . obo:MS_1000170 obo:IAO_0000115 "Waters oa-ToF based MALDI L."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000170"^^xsd:string ; a owl:Class ; rdfs:label "M@LDI L"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1000171 obo:IAO_0000115 "Waters oa-ToF based MALDI LR."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000171"^^xsd:string ; a owl:Class ; rdfs:label "M@LDI LR"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1000172 obo:IAO_0000115 "ThermoFinnigan MAT253 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000172"^^xsd:string ; a owl:Class ; rdfs:label "MAT253"^^xsd:string ; rdfs:subClassOf obo:MS_1000493 . obo:MS_1000173 obo:IAO_0000115 "ThermoFinnigan MAT900XP MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000173"^^xsd:string ; a owl:Class ; rdfs:label "MAT900XP"^^xsd:string ; rdfs:subClassOf obo:MS_1000493 . obo:MS_1000174 obo:IAO_0000115 "ThermoFinnigan MAT900XP Trap MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000174"^^xsd:string ; a owl:Class ; rdfs:label "MAT900XP Trap"^^xsd:string ; rdfs:subClassOf obo:MS_1000493 . obo:MS_1000175 obo:IAO_0000115 "ThermoFinnigan MAT95XP MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000175"^^xsd:string ; a owl:Class ; rdfs:label "MAT95XP"^^xsd:string ; rdfs:subClassOf obo:MS_1000493 . obo:MS_1000176 obo:IAO_0000115 "ThermoFinnigan MAT95XP Trap MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000176"^^xsd:string ; a owl:Class ; rdfs:label "MAT95XP Trap"^^xsd:string ; rdfs:subClassOf obo:MS_1000493 . obo:MS_1000177 obo:IAO_0000115 "Bruker Daltonics' microflex: MALDI TOF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000177"^^xsd:string ; a owl:Class ; rdfs:label "microflex"^^xsd:string ; rdfs:subClassOf obo:MS_1001534 . obo:MS_1000178 obo:IAO_0000115 "Bruker Daltonics' microTOF LC: ESI TOF, Nanospray, APCI, APPI."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000178"^^xsd:string ; a owl:Class ; rdfs:label "microTOF LC"^^xsd:string ; rdfs:subClassOf obo:MS_1001536 . obo:MS_1000179 obo:IAO_0000115 "ThermoFinnigan NEPTUNE MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000179"^^xsd:string ; a owl:Class ; rdfs:label "neptune"^^xsd:string ; rdfs:subClassOf obo:MS_1000125 . obo:MS_1000180 obo:IAO_0000115 "Waters NG-5400 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000180"^^xsd:string ; a owl:Class ; rdfs:label "NG-5400"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1000181 obo:IAO_0000115 "IonSpec OMEGA MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000181"^^xsd:string ; a owl:Class ; rdfs:label "OMEGA"^^xsd:string ; rdfs:subClassOf obo:MS_1000123 . obo:MS_1000182 obo:IAO_0000115 "IonSpec OMEGA-2001 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000182"^^xsd:string ; a owl:Class ; rdfs:label "OMEGA-2001"^^xsd:string ; rdfs:subClassOf obo:MS_1000123 . obo:MS_1000183 obo:IAO_0000115 "Bruker Daltonics' OmniFlex: MALDI TOF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000183"^^xsd:string ; a owl:Class ; rdfs:label "OmniFlex"^^xsd:string ; rdfs:subClassOf obo:MS_1001534 . obo:MS_1000184 obo:IAO_0000115 "Waters Platform ICP MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000184"^^xsd:string ; a owl:Class ; rdfs:label "Platform ICP"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1000185 obo:IAO_0000115 "ThermoFinnigan PolarisQ MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000185"^^xsd:string ; a owl:Class ; rdfs:label "PolarisQ"^^xsd:string ; rdfs:subClassOf obo:MS_1000125 . obo:MS_1000186 obo:IAO_0000115 "Applied Biosystems/MDS SCIEX Proteomics Solution 1 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000186"^^xsd:string ; a owl:Class ; rdfs:label "proteomics solution 1"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1000187 obo:IAO_0000115 "Applied Biosystems/MDS SCIEX Q TRAP MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000187"^^xsd:string ; a owl:Class ; rdfs:label "Q TRAP"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1000188 obo:IAO_0000115 "Waters oa-ToF based Q-Tof micro."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000188"^^xsd:string ; a owl:Class ; rdfs:label "Q-Tof micro"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1000189 obo:IAO_0000115 "Waters oa-ToF based Q-Tof Ultima."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000189"^^xsd:string ; a owl:Class ; rdfs:label "Q-Tof Ultima"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1000190 obo:IAO_0000115 "Applied Biosystems/MDS SCIEX QSTAR MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000190"^^xsd:string ; a owl:Class ; rdfs:label "QSTAR"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1000191 obo:IAO_0000115 "Waters (triple) quadrupole based micro."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000191"^^xsd:string ; a owl:Class ; rdfs:label "quattro micro"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1000192 obo:IAO_0000115 "Waters (triple) quadrupole based Ultima."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000192"^^xsd:string ; a owl:Class ; rdfs:label "Quattro Ultima"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1000193 obo:IAO_0000115 "ThermoFinnigan Surveyor MSQ MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000193"^^xsd:string ; a owl:Class ; rdfs:label "Surveyor MSQ"^^xsd:string ; rdfs:subClassOf obo:MS_1000125 . obo:MS_1000194 obo:IAO_0000115 "Applied Biosystems/MDS SCIEX SymBiot I MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000194"^^xsd:string ; a owl:Class ; rdfs:label "SymBiot I"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1000195 obo:IAO_0000115 "Applied Biosystems/MDS SCIEX SymBiot XVI MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000195"^^xsd:string ; a owl:Class ; rdfs:label "SymBiot XVI"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1000196 obo:IAO_0000115 "ThermoFinnigan TEMPUS TOF MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000196"^^xsd:string ; a owl:Class ; rdfs:label "TEMPUS TOF"^^xsd:string ; rdfs:subClassOf obo:MS_1000125 . obo:MS_1000197 obo:IAO_0000115 "ThermoFinnigan TRACE DSQ MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000197"^^xsd:string ; a owl:Class ; rdfs:label "TRACE DSQ"^^xsd:string ; rdfs:subClassOf obo:MS_1000125 . obo:MS_1000198 obo:IAO_0000115 "ThermoFinnigan TRITON MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000198"^^xsd:string ; a owl:Class ; rdfs:label "TRITON"^^xsd:string ; rdfs:subClassOf obo:MS_1000125 . obo:MS_1000199 obo:IAO_0000115 "ThermoFinnigan TSQ Quantum MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000199"^^xsd:string ; a owl:Class ; rdfs:label "TSQ Quantum"^^xsd:string ; rdfs:subClassOf obo:MS_1000125 . obo:MS_1000200 obo:IAO_0000115 "IonSpec Ultima MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000200"^^xsd:string ; a owl:Class ; rdfs:label "ultima"^^xsd:string ; rdfs:subClassOf obo:MS_1000123 . obo:MS_1000201 obo:IAO_0000115 "Bruker Daltonics' ultraflex: MALDI TOF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000201"^^xsd:string ; a owl:Class ; rdfs:label "ultraflex"^^xsd:string ; rdfs:subClassOf obo:MS_1001534 . obo:MS_1000202 obo:IAO_0000115 "Bruker Daltonics' ultraflex TOF/TOF: MALDI TOF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000202"^^xsd:string ; a owl:Class ; rdfs:label "ultraflex TOF/TOF"^^xsd:string ; rdfs:subClassOf obo:MS_1001534 . obo:MS_1000203 obo:IAO_0000115 "Applied Biosystems/MDS SCIEX Voyager-DE PRO MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000203"^^xsd:string ; a owl:Class ; rdfs:label "Voyager-DE PRO"^^xsd:string ; rdfs:subClassOf obo:MS_1000495 . obo:MS_1000204 obo:IAO_0000115 "Applied Biosystems/MDS SCIEX Voyager-DE STR MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000204"^^xsd:string ; a owl:Class ; rdfs:label "Voyager-DE STR"^^xsd:string ; rdfs:subClassOf obo:MS_1000495 . obo:MS_1000205 obo:IAO_0000115 "The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum."^^xsd:string ; oboInOwl:hasExactSynonym "Multiple Ion Monitoring"^^xsd:string, "SIM"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "MIM"^^xsd:string ; oboInOwl:id "MS:1000205"^^xsd:string ; a owl:Class ; rdfs:label "selected ion monitoring"^^xsd:string ; rdfs:subClassOf obo:MS_1003213, obo:MS_1003215 . obo:MS_1000206 obo:IAO_0000115 "Data acquired from specific product ions corresponding to m/z selected precursor ions recorded via multiple stages of mass spectrometry. Selected reaction monitoring can be performed in time or in space."^^xsd:string ; oboInOwl:hasExactSynonym "SRM"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "MRM"^^xsd:string, "Multiple Reaction Monitoring"^^xsd:string ; oboInOwl:id "MS:1000206"^^xsd:string ; a owl:Class ; rdfs:label "selected reaction monitoring"^^xsd:string ; rdfs:subClassOf obo:MS_1003213, obo:MS_1003215 . obo:MS_1000207 obo:IAO_0000115 "OBSOLETE An experimentally determined mass that is can be to determine a unique elemental formula. For ions less than 200 u, a measurement with 5 ppm accuracy is sufficient to determine the elemental composition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000207"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion attribute was made obsolete."^^xsd:string ; rdfs:label "accurate mass"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000002 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] ; owl:deprecated true . obo:MS_1000208 obo:IAO_0000115 "OBSOLETE The mass of an ion or molecule calculated using the average mass of each element weighted for its natural isotopic abundance."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000208"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion attribute was made obsolete."^^xsd:string ; rdfs:label "average mass"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000002 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] ; owl:deprecated true . obo:MS_1000209 obo:IAO_0000115 "OBSOLETE The minimum energy that must be imparted to an atom or molecule to produce a specified ion. The term appearance potential is not recommended."^^xsd:string ; oboInOwl:hasExactSynonym "AE"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000209"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion attribute was made obsolete."^^xsd:string ; rdfs:label "appearance energy"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000266 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] ; owl:deprecated true . obo:MS_1000210 obo:IAO_0000115 "The peak in a mass spectrum that has the greatest intensity. This term may be applied to the spectra of pure substances or mixtures."^^xsd:string ; oboInOwl:hasExactSynonym "BP"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000210"^^xsd:string ; a owl:Class ; rdfs:label "base peak"^^xsd:string ; rdfs:subClassOf obo:MS_1000231 . obo:MS_1000211 obo:IAO_0000115 "OBSOLETE The total charge on an ion divided by the electron charge e. OBSOLETED 2009-10-27 since this was viewed as a duplication of 00041 charge state."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000211"^^xsd:string ; a owl:Class ; rdfs:label "OBSOLETE charge number"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] ; owl:deprecated true . obo:MS_1000212 obo:IAO_0000115 "OBSOLETE A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1.660 538 86(28) x 10^-27 kg."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000212"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was redundant with the Unit Ontology term dalton (UO:0000221)."^^xsd:string ; rdfs:label "dalton"^^xsd:string ; owl:deprecated true . obo:MS_1000213 obo:IAO_0000115 "OBSOLETE The electron affinity of M is the minimum energy required for the process M- ? M + e where M- and M are in their ground rotational, vibrational and electronic states and the electron has zero kinetic energy."^^xsd:string ; oboInOwl:hasExactSynonym "EA"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000213"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion attribute was made obsolete."^^xsd:string ; rdfs:label "electron affinity"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] ; owl:deprecated true . obo:MS_1000214 obo:IAO_0000115 "OBSOLETE The potential difference through which electrons are accelerated before they are used to bring about electron ionization."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000214"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "electron energy obsolete"^^xsd:string ; owl:deprecated true . obo:MS_1000215 obo:IAO_0000115 "OBSOLETE The calculated mass of an ion or molecule containing a single isotope of each atom."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000215"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion attribute was made obsolete."^^xsd:string ; rdfs:label "exact mass"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000002 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] ; owl:deprecated true . obo:MS_1000216 obo:IAO_0000115 "A section of a mass spectrometer in which there are no electric or magnetic fields."^^xsd:string ; oboInOwl:hasExactSynonym "FFR"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000216"^^xsd:string ; a owl:Class ; rdfs:label "field-free region"^^xsd:string ; rdfs:subClassOf obo:MS_1000487 . obo:MS_1000217 obo:IAO_0000115 "OBSOLETE A measure of the probability that a given ionization process will occur when an atom or molecule interacts with a photon, electron, atom or molecule."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000217"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "ionization cross section"^^xsd:string ; owl:deprecated true . obo:MS_1000218 obo:IAO_0000115 "OBSOLETE The ratio of the number of ions formed to the number of electrons, molecules or photons used."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000218"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was replaced by ionization efficiency (MS:1000392)."^^xsd:string ; rdfs:label "ionization efficiency"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] ; owl:deprecated true . obo:MS_1000219 obo:IAO_0000115 "OBSOLETE The minimum energy required to remove an electron from an atom or molecule to produce a positive ion."^^xsd:string ; oboInOwl:hasExactSynonym "IE"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000219"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion attribute was made obsolete."^^xsd:string ; rdfs:label "ionization energy"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000266 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] ; owl:deprecated true . obo:MS_1000220 obo:IAO_0000115 "OBSOLETE A quantitative mass spectrometry technique in which an isotopically enriched compound is used as an internal standard."^^xsd:string ; oboInOwl:hasExactSynonym "IDMS"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000220"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term mass spectrometry was made obsolete."^^xsd:string ; rdfs:label "isotope dilution mass spectrometry"^^xsd:string ; owl:deprecated true . obo:MS_1000221 obo:IAO_0000115 "The deflection of charged particles in a magnetic field due to a force equal to qvxB where q is the particle charge, v its velocity and B the magnetic field. Magnetic deflection of an ion beam is used for m/z separation in a magnetic sector mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000221"^^xsd:string ; a owl:Class ; rdfs:label "magnetic deflection"^^xsd:string ; rdfs:subClassOf obo:MS_1000597 . obo:MS_1000222 obo:IAO_0000115 "OBSOLETE The difference between the monoisotopic and nominal mass of a molecule or atom."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000222"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion attribute was made obsolete."^^xsd:string ; rdfs:label "mass defect"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000002 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] ; owl:deprecated true . obo:MS_1000223 obo:IAO_0000115 "OBSOLETE The sum of the protons and neutrons in an atom, molecule or ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000223"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion attribute was made obsolete."^^xsd:string ; rdfs:label "mass number"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] ; owl:deprecated true . obo:MS_1000224 obo:IAO_0000115 "Mass of a molecule measured in unified atomic mass units (u or Da)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000224"^^xsd:string ; a owl:Class ; rdfs:label "molecular mass"^^xsd:string ; rdfs:subClassOf obo:MS_1000861, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000002 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000225 obo:IAO_0000115 "OBSOLETE The mass of an ion or molecule calculated using the mass of the most abundant isotope of each element."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000225"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion attribute was made obsolete."^^xsd:string ; rdfs:label "monoisotopic mass"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000002 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] ; owl:deprecated true . obo:MS_1000226 obo:IAO_0000115 "OBSOLETE A mass spectrometry technique in which the sample is introduced into the mass spectrometer as a molecular beam."^^xsd:string ; oboInOwl:hasExactSynonym "MBMS"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000226"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term mass spectrometer was made obsolete."^^xsd:string ; rdfs:label "molecular beam mass spectrometry"^^xsd:string ; owl:deprecated true . obo:MS_1000227 obo:IAO_0000115 "Photoionization of an atom or molecule in which in two or more photons are absorbed."^^xsd:string ; oboInOwl:hasExactSynonym "MPI"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000227"^^xsd:string ; a owl:Class ; rdfs:label "multiphoton ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000228 obo:IAO_0000115 "OBSOLETE An organic molecule containing the elements C, H, O, S, P, or halogen has an odd nominal mass if it contains an odd number of nitrogen atoms."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000228"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "nitrogen rule"^^xsd:string ; owl:deprecated true . obo:MS_1000229 obo:IAO_0000115 "OBSOLETE The mass of an ion or molecule calculated using the mass of the most abundant isotope of each element rounded to the nearest integer value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000229"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion attribute was made obsolete."^^xsd:string ; rdfs:label "nominal mass"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000002 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] ; owl:deprecated true . obo:MS_1000230 obo:IAO_0000115 "OBSOLETE Odd-electron ions may dissociate to form either odd or even-electron ions, whereas even-electron ions generally form even-electron fragment ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000230"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "odd-electron rule"^^xsd:string ; owl:deprecated true . obo:MS_1000231 obo:IAO_0000115 "A localized region of relatively large ion signal in a mass spectrum. Although peaks are often associated with particular ions, the terms peak and ion should not be used interchangeably."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000231"^^xsd:string ; a owl:Class ; rdfs:label "peak"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000442 ] . obo:MS_1000232 obo:IAO_0000115 "OBSOLETE The height or area of a peak in a mass spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000232"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was replaced by base peak intensity (MS:1000505)."^^xsd:string ; rdfs:label "peak intensity"^^xsd:string ; owl:deprecated true . obo:MS_1000233 obo:IAO_0000115 "OBSOLETE The proton affinity of a species M is defined as the negative of the enthalpy change for the reaction M + H+ ->[M+H]+, where all species are in their ground rotational, vibrational and electronic states."^^xsd:string ; oboInOwl:hasExactSynonym "PA"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000233"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion attribute was made obsolete."^^xsd:string ; rdfs:label "proton affinity"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] ; owl:deprecated true . obo:MS_1000234 obo:IAO_0000115 "OBSOLETE In a mass spectrum, the observed mass divided by the difference between two masses that can be separated. The method by which delta m was obtained and the mass at which the measurement was made should be reported."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000234"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was replaced by mass resolving power (MS:1000800)."^^xsd:string ; rdfs:label "mass resolving power"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] ; owl:deprecated true . obo:MS_1000235 obo:IAO_0000115 "Representation of the total ion current detected in each of a series of mass spectra versus time."^^xsd:string ; oboInOwl:hasExactSynonym "TIC chromatogram"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000235"^^xsd:string ; a owl:Class ; rdfs:label "total ion current chromatogram"^^xsd:string ; rdfs:subClassOf obo:MS_1000810 . obo:MS_1000236 obo:IAO_0000115 "The ratio of the number of ions leaving a region of a mass spectrometer to the number entering that region."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000236"^^xsd:string ; a owl:Class ; rdfs:label "transmission"^^xsd:string ; rdfs:subClassOf obo:MS_1000496, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000237 obo:IAO_0000115 "OBSOLETE A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground state and equal to 1.660 538 86(28) x 10^-27 kg."^^xsd:string ; oboInOwl:hasExactSynonym "u"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000237"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was redundant with Unit Ontology dalton (UO:0000221)."^^xsd:string ; rdfs:label "unified atomic mass unit"^^xsd:string ; owl:deprecated true . obo:MS_1000238 obo:IAO_0000115 "OBSOLETE A mass spectrometry technique in which atoms extracted from a sample are ionized, accelerated to MeV energies and separated according to their momentum, charge and energy."^^xsd:string ; oboInOwl:hasExactSynonym "AMS"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000238"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term mass spectrometer was made obsolete."^^xsd:string ; rdfs:label "accelerator mass spectrometry"^^xsd:string ; owl:deprecated true . obo:MS_1000239 obo:IAO_0000115 "Matrix-assisted laser desorption ionization in which the sample target is at atmospheric pressure and the ions formed by the pulsed laser are sampled through a small aperture into the mass spectrometer."^^xsd:string ; oboInOwl:hasExactSynonym "AP MALDI"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000239"^^xsd:string ; a owl:Class ; rdfs:label "atmospheric pressure matrix-assisted laser desorption ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000240 . obo:MS_1000240 obo:IAO_0000115 "Any ionization process in which ions are formed in the gas phase at atmospheric pressure."^^xsd:string ; oboInOwl:hasExactSynonym "API"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000240"^^xsd:string ; a owl:Class ; rdfs:label "atmospheric pressure ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000241 obo:IAO_0000115 "OBSOLETE Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization."^^xsd:string ; oboInOwl:hasExactSynonym "APPI"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000241"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was replaced by atmospheric pressure photoionization (MS:1000382)."^^xsd:string ; rdfs:label "Atmostpheric Pressure Photoionization"^^xsd:string ; owl:deprecated true . obo:MS_1000242 obo:IAO_0000115 "A special case of infrared multiphoton dissociation wherein excitation of the reactant ion is caused by absorption of infrared photons radiating from heated blackbody surroundings, which are usually the walls of a vacuum chamber. See also infrared multiphoton dissociation."^^xsd:string ; oboInOwl:hasExactSynonym "BIRD"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000242"^^xsd:string ; a owl:Class ; rdfs:label "blackbody infrared radiative dissociation"^^xsd:string ; rdfs:subClassOf obo:MS_1000044 . obo:MS_1000243 obo:IAO_0000115 "OBSOLETE A fragmentation of an even-electron ion in which the cleaved bond is not adjacent to the apparent charge site."^^xsd:string ; oboInOwl:hasExactSynonym "CRF"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000243"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "charge-remote fragmentation"^^xsd:string ; owl:deprecated true . obo:MS_1000244 obo:IAO_0000115 "OBSOLETE MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored."^^xsd:string ; oboInOwl:hasExactSynonym "CRM"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000244"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "consecutive reaction monitoring"^^xsd:string ; owl:deprecated true . obo:MS_1000245 obo:IAO_0000115 "The reaction of a positive ion with an atom or molecule that results in the removal of one or more electrons from the ion."^^xsd:string ; oboInOwl:hasExactSynonym "CS"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000245"^^xsd:string ; a owl:Class ; rdfs:label "charge stripping"^^xsd:string ; rdfs:subClassOf obo:MS_1000510 . obo:MS_1000246 obo:IAO_0000115 "The application of the accelerating voltage pulse after a time delay in desorption ionization from a surface. The extraction delay can produce energy focusing in a time-of-flight mass spectrometer."^^xsd:string ; oboInOwl:hasExactSynonym "DE"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000246"^^xsd:string ; a owl:Class ; rdfs:label "delayed extraction"^^xsd:string ; rdfs:subClassOf obo:MS_1000597 . obo:MS_1000247 obo:IAO_0000115 "The formation of ions from a solid or liquid material after the rapid vaporization of that sample."^^xsd:string ; oboInOwl:hasExactSynonym "DI"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000247"^^xsd:string ; a owl:Class ; rdfs:label "desorption ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000248 obo:IAO_0000115 "A device for introducing a solid or liquid sample into a mass spectrometer ion source for desorption ionization."^^xsd:string ; oboInOwl:hasExactSynonym "DIP"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000248"^^xsd:string ; a owl:Class ; rdfs:label "direct insertion probe"^^xsd:string ; rdfs:subClassOf obo:MS_1000007 . obo:MS_1000249 obo:IAO_0000115 "The delivery of a liquid sample into a mass spectrometer for spray or desorption ionization."^^xsd:string ; oboInOwl:hasExactSynonym "DLI"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000249"^^xsd:string ; a owl:Class ; rdfs:label "direct liquid introduction"^^xsd:string ; rdfs:subClassOf obo:MS_1000007 . obo:MS_1000250 obo:IAO_0000115 "A process in which a multiply protonated molecules interacts with a low energy electrons. Capture of the electron leads the liberation of energy and a reduction in charge state of the ion with the production of the (M + nH) (n-1)+ odd electron ion, which readily fragments."^^xsd:string ; oboInOwl:hasExactSynonym "ECD"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000250"^^xsd:string ; a owl:Class ; rdfs:label "electron capture dissociation"^^xsd:string ; rdfs:subClassOf obo:MS_1000044 . obo:MS_1000251 obo:IAO_0000115 "OBSOLETE An ion containing no unpaired electrons in its ground electronic state, e.g. CH3+ in its ground state."^^xsd:string ; oboInOwl:hasExactSynonym "EE"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000251"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion chemical type was made obsolete."^^xsd:string ; rdfs:label "even-electron ion"^^xsd:string ; owl:deprecated true . obo:MS_1000252 obo:IAO_0000115 "OBSOLETE The reaction of an ion with an electron in which the translational energy of the collision is converted into internal energy of the ion."^^xsd:string ; oboInOwl:hasExactSynonym "EIEIO"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000252"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "electron-induced excitation in organics"^^xsd:string ; owl:deprecated true . obo:MS_1000253 obo:IAO_0000115 "A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons. The secondary electrons are then accelerated to other electrodes or parts of a continuous electrode to produce further secondary electrons."^^xsd:string ; oboInOwl:hasExactSynonym "EM"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000253"^^xsd:string ; a owl:Class ; rdfs:label "electron multiplier"^^xsd:string ; rdfs:subClassOf obo:MS_1000026 . obo:MS_1000254 obo:IAO_0000115 "A device consisting of conducting parallel plates, concentric cylinders or concentric spheres that separates charged particles according to their kinetic energy by means of an electric field that is constant in time."^^xsd:string ; oboInOwl:hasExactSynonym "ESA"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000254"^^xsd:string ; a owl:Class ; rdfs:label "electrostatic energy analyzer"^^xsd:string ; rdfs:subClassOf obo:MS_1000443 . obo:MS_1000255 obo:IAO_0000115 "An ion source immersed in a flow of helium or other inert buffer gas that carries the ions through a meter-long reactor at pressures around 100 Pa."^^xsd:string ; oboInOwl:hasExactSynonym "FA"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000255"^^xsd:string ; a owl:Class ; rdfs:label "flowing afterglow"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000256 obo:IAO_0000115 "OBSOLETE The separation of ions between two concentric cylindrical electrodes due to application of a high voltage asymmetric waveform whereby ions migrate towards one of the two electrodes depending on the ratio of the high- to low-field mobility of the ion."^^xsd:string ; oboInOwl:hasExactSynonym "FAIMS"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000256"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term mass spectrometer was made obsolete."^^xsd:string ; rdfs:label "high-field asymmetric waveform ion mobility spectrometry"^^xsd:string ; owl:deprecated true . obo:MS_1000257 obo:IAO_0000115 "The formation of gas-phase ions from a material deposited on a solid surface in the presence of a high electric field. Because this process may encompass ionization by field ionization or other mechanisms, it is not recommended as a synonym for field desorption ionization."^^xsd:string ; oboInOwl:hasExactSynonym "FD"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000257"^^xsd:string ; a owl:Class ; rdfs:label "field desorption"^^xsd:string ; rdfs:subClassOf obo:MS_1000247 . obo:MS_1000258 obo:IAO_0000115 "The removal of electrons from any species by interaction with a high electric field."^^xsd:string ; oboInOwl:hasExactSynonym "FI"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000258"^^xsd:string ; a owl:Class ; rdfs:label "field ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000259 obo:IAO_0000115 "The formation of ions in the gas phase and from solid samples at the cathode by application of a voltage to a low pressure gas."^^xsd:string ; oboInOwl:hasExactSynonym "GD-MS"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000259"^^xsd:string ; a owl:Class ; rdfs:label "glow discharge ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000260 obo:IAO_0000115 "OBSOLETE A method of analysis in which a beam of ions is separated according to the ratio of its translational energy to charge."^^xsd:string ; oboInOwl:hasExactSynonym "IKES"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000260"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term mass spectrometer was made obsolete."^^xsd:string ; rdfs:label "ion kinetic energy spectrometry"^^xsd:string ; owl:deprecated true . obo:MS_1000261 obo:IAO_0000115 "OBSOLETE The separation of ions according to their velocity through a buffer gas under the influence of an electric field."^^xsd:string ; oboInOwl:hasExactSynonym "IMS"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000261"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term mass spectrometer was made obsolete."^^xsd:string ; rdfs:label "ion mobility spectrometry"^^xsd:string ; owl:deprecated true . obo:MS_1000262 obo:IAO_0000115 "Multiphoton ionization where the reactant ion dissociates as a result of the absorption of multiple infrared photons."^^xsd:string ; oboInOwl:hasExactSynonym "IRMPD"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000262"^^xsd:string ; a owl:Class ; rdfs:label "infrared multiphoton dissociation"^^xsd:string ; rdfs:subClassOf obo:MS_1000435 . obo:MS_1000263 obo:IAO_0000115 "OBSOLETE The measurement of the relative quantity of the different isotopes of an element in a material with a mass spectrometer."^^xsd:string ; oboInOwl:hasExactSynonym "IRMS"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000263"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term mass spectrometry was made obsolete."^^xsd:string ; rdfs:label "isotope ratio mass spectrometry"^^xsd:string ; owl:deprecated true . obo:MS_1000264 obo:IAO_0000115 "A device for spatially confining ions using electric and magnetic fields alone or in combination."^^xsd:string ; oboInOwl:hasExactSynonym "IT"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000264"^^xsd:string ; a owl:Class ; rdfs:label "ion trap"^^xsd:string ; rdfs:subClassOf obo:MS_1000443 . obo:MS_1000265 obo:IAO_0000115 "OBSOLETE Distribution of values of translational kinetic energy release for an ensemble of metastable ions undergoing a specific dissociation reaction."^^xsd:string ; oboInOwl:hasExactSynonym "KERD"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000265"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "kinetic energy release distribution"^^xsd:string ; owl:deprecated true . obo:MS_1000266 obo:IAO_0000115 "OBSOLETE The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules."^^xsd:string ; obo:IAO_0100001 "MS:1000393"^^xsd:string ; oboInOwl:hasExactSynonym "LD"^^xsd:string, "Laser Ionization MERGE"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000266"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was replaced by laser desorption ionization (MS:1000393)."^^xsd:string ; rdfs:label "Laser Desorption"^^xsd:string ; owl:deprecated true . obo:MS_1000267 obo:IAO_0000115 "OBSOLETE Spectra that are obtained from a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector in reverse geometry. The accelerating voltage, V, and the magnetic sector field, B, are set at fixed values to select the precursor ions, which are then allowed to dissociate or to react in a field free region between the two sectors. The kinetic energy product ions of m/z selected precursor ions is analyzed by scanning the electric sector field, E. The width of the product ion spectrum peaks is related to the kinetic energy release distribution (KERD) for the dissociation process."^^xsd:string ; oboInOwl:hasExactSynonym "MIKES"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000267"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term mass spectrometer was made obsolete."^^xsd:string ; rdfs:label "mass analyzed ion kinetic energy spectrometry"^^xsd:string ; owl:deprecated true . obo:MS_1000268 obo:IAO_0000115 "OBSOLETE The branch of science that deals with all aspects of mass spectrometers and the results obtained with these instruments."^^xsd:string ; oboInOwl:hasExactSynonym "MS"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000268"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "mass spectrometry"^^xsd:string ; owl:deprecated true . obo:MS_1000269 obo:IAO_0000115 "OBSOLETE The acquisition, study and spectra of the electrically charged products or precursors of a m/z selected ion or ions."^^xsd:string ; oboInOwl:hasExactSynonym "MS/MS"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000269"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term mass spectrometer was made obsolete."^^xsd:string ; rdfs:label "mass spectrometry/mass spectrometry"^^xsd:string ; owl:deprecated true . obo:MS_1000270 obo:IAO_0000115 "OBSOLETE Multiple stages of precursor ion m/z selection followed by product ion detection for successive progeny ions."^^xsd:string ; oboInOwl:hasExactSynonym "MSn"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000270"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term m/z Separation Method was made obsolete."^^xsd:string ; rdfs:label "multiple stage mass spectrometry"^^xsd:string ; owl:deprecated true . obo:MS_1000271 obo:IAO_0000115 "Chemical ionization that results in the formation of negative ions."^^xsd:string ; oboInOwl:hasExactSynonym "NICI"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000271"^^xsd:string ; a owl:Class ; rdfs:label "Negative Ion chemical ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000272 obo:IAO_0000115 "With this technique, m/z selected ions form neutrals by charge transfer to a collision gas or by dissociation. The neutrals are separated from the remaining ions and ionized in collisions with a second gas. This method is used to investigate reaction intermediates and other unstable species."^^xsd:string ; oboInOwl:hasExactSynonym "NRMS"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000272"^^xsd:string ; a owl:Class ; rdfs:label "neutralization reionization mass spectrometry"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000273 obo:IAO_0000115 "The ionization of an atom or molecule by a photon, written M + h? ? M^+ + e. The term photon impact is not recommended."^^xsd:string ; oboInOwl:hasExactSynonym "PI"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000273"^^xsd:string ; a owl:Class ; rdfs:label "photoionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000274 obo:IAO_0000115 "A mass spectrometry technique in which the sample is heated to the point of decomposition and the gaseous decomposition products are introduced into the ion source."^^xsd:string ; oboInOwl:hasExactSynonym "PyMS"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000274"^^xsd:string ; a owl:Class ; rdfs:label "pyrolysis mass spectrometry"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000275 obo:IAO_0000115 "A transmission quadrupole to which an oscillating potential is applied so as to focus a beam of ions through a collision gas with no m/z separation."^^xsd:string ; oboInOwl:hasExactSynonym "q"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000275"^^xsd:string ; a owl:Class ; rdfs:label "collision quadrupole"^^xsd:string ; rdfs:subClassOf obo:MS_1000597 . obo:MS_1000276 obo:IAO_0000115 "Multiphoton ionization in which the ionization cross section is significantly enhanced because the energy of the incident photons is resonant with an intermediate excited state of the neutral species."^^xsd:string ; oboInOwl:hasExactSynonym "REMPI"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000276"^^xsd:string ; a owl:Class ; rdfs:label "resonance enhanced multiphoton ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000277 obo:IAO_0000115 "OBSOLETE A mass spectrometer used to measure the composition and pressure of gasses in an evacuated chamber."^^xsd:string ; oboInOwl:hasExactSynonym "RGA"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000277"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term mass spectrometer was made obsolete."^^xsd:string ; rdfs:label "residual gas analyzer"^^xsd:string ; owl:deprecated true . obo:MS_1000278 obo:IAO_0000115 "The formation of ionized species in the gas phase from analytes deposited on a particular surface substrate which is irradiated with a laser beam of which wavelength is absorbed by the surface. See also desorption/ionization on silicon and laser desorption/ionization."^^xsd:string ; oboInOwl:hasExactSynonym "SELDI"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000278"^^xsd:string ; a owl:Class ; rdfs:label "surface enhanced laser desorption ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000406 . obo:MS_1000279 obo:IAO_0000115 "Matrix-assisted laser desorption ionization in which the matrix is covalently linked to the target surface."^^xsd:string ; oboInOwl:hasExactSynonym "SEND"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000279"^^xsd:string ; a owl:Class ; rdfs:label "surface enhanced neat desorption"^^xsd:string ; rdfs:subClassOf obo:MS_1000406 . obo:MS_1000280 obo:IAO_0000115 "OBSOLETE The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature."^^xsd:string ; oboInOwl:hasExactSynonym "SI"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000280"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was replaced by surface ionization (MS:1000406)."^^xsd:string ; rdfs:label "suface ionization"^^xsd:string ; owl:deprecated true . obo:MS_1000281 obo:IAO_0000115 "A device in which m/z selected ions are entrained in an inert carrier gas and undergo ion-molecule reactions."^^xsd:string ; oboInOwl:hasExactSynonym "SIFT"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000281"^^xsd:string ; a owl:Class ; rdfs:label "selected ion flow tube"^^xsd:string ; rdfs:subClassOf obo:MS_1000597 . obo:MS_1000282 obo:IAO_0000115 "A technique associated with Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry to carry out ion/neutral reactions such as low-energy collision-induced dissociation. A radio-frequency electric field of slightly off-resonance to the cyclotron frequency of the reactant ion cyclically accelerates and decelerates the reactant ion that is confined in the Penning ion trap. The ion's orbit does not exceed the dimensions of ion trap while the ion undergoes an ion/neutral species process that produces a high average translational energy for an extended time."^^xsd:string ; oboInOwl:hasExactSynonym "SORI"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000282"^^xsd:string ; a owl:Class ; rdfs:label "sustained off-resonance irradiation"^^xsd:string ; rdfs:subClassOf obo:MS_1000044 . obo:MS_1000283 obo:IAO_0000115 "OBSOLETE Mass spectrometry using spark ionization."^^xsd:string ; oboInOwl:hasExactSynonym "SSMS"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000283"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was replaced by spark ionization (MS:1000404)."^^xsd:string ; rdfs:label "Spark Source Mass Spectrometry"^^xsd:string ; owl:deprecated true . obo:MS_1000284 obo:IAO_0000115 "A technique to create excitation waveforms for ions in FT-ICR mass spectrometer or Paul ion trap. An excitation waveform in the time-domain is generated by taking the inverse Fourier transform of an appropriate frequency-domain programmed excitation spectrum, in which the resonance frequencies of ions to be excited are included. This technique may be used for selection of precursor ions in MS2 experiments."^^xsd:string ; oboInOwl:hasExactSynonym "SWIFT"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000284"^^xsd:string ; a owl:Class ; rdfs:label "stored waveform inverse fourier transform"^^xsd:string ; rdfs:subClassOf obo:MS_1000443 . obo:MS_1000285 obo:IAO_0000115 "The sum of all the separate ion currents carried by the ions of different m/z contributing to a complete mass spectrum or in a specified m/z range of a mass spectrum."^^xsd:string ; oboInOwl:hasExactSynonym "TIC"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000285"^^xsd:string ; a owl:Class ; rdfs:label "total ion current"^^xsd:string ; rdfs:subClassOf obo:MS_1003058, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000286 obo:IAO_0000115 "Energy focusing in a time-of-flight mass spectrometer that is accomplished by introducing a time delay between the formation of the ions and the application of the accelerating voltage pulse."^^xsd:string ; oboInOwl:hasExactSynonym "TLF"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000286"^^xsd:string ; a owl:Class ; rdfs:label "time lag focusing"^^xsd:string ; rdfs:subClassOf obo:MS_1000597 . obo:MS_1000287 obo:IAO_0000115 "OBSOLETE An instrument that separates ions by m/z in a field-free region after acceleration to a fixed kinetic energy."^^xsd:string ; oboInOwl:hasExactSynonym "TOF-MS"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000287"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term mass spectrometer was made obsolete."^^xsd:string ; rdfs:label "time-of-flight mass spectrometer"^^xsd:string ; owl:deprecated true . obo:MS_1000288 obo:IAO_0000115 "A device that uses an oscillating electric field and magnetic field to accelerate charged particles."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000288"^^xsd:string ; a owl:Class ; rdfs:label "cyclotron"^^xsd:string ; rdfs:subClassOf obo:MS_1000443 . obo:MS_1000289 obo:IAO_0000115 "OBSOLETE A mass spectrometer that uses a magnetic sector for m/z focusing and an electric sector for energy focusing of an ion beam."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000289"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term mass spectrometer was made obsolete."^^xsd:string ; rdfs:label "double-focusing mass spectrometer"^^xsd:string ; owl:deprecated true . obo:MS_1000290 obo:IAO_0000115 "OBSOLETE A mass spectrometer that combines m/z analyzers of different types to perform tandem mass spectrometry."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000290"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term mass spectrometer was made obsolete."^^xsd:string ; rdfs:label "hybrid mass spectrometer"^^xsd:string ; owl:deprecated true . obo:MS_1000291 obo:IAO_0000115 "A two dimensional Paul ion trap in which ions are confined in the axial dimension by means of an electric field at the ends of the trap."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000291"^^xsd:string ; a owl:Class ; rdfs:label "linear ion trap"^^xsd:string ; rdfs:subClassOf obo:MS_1000264 . obo:MS_1000292 obo:IAO_0000115 "OBSOLETE An instrument that separates a beam of ions according to their mass-to-charge ratio in which the ions are directed onto a focal plane detector such as a photographic plate."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000292"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "mass spectrograph obsolete"^^xsd:string ; owl:deprecated true . obo:MS_1000293 obo:IAO_0000115 "OBSOLETE An instrument that measures the mass-to-charge ratio and relative abundances of ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000293"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "mass spectrometer"^^xsd:string ; owl:deprecated true . obo:MS_1000294 obo:IAO_0000115 "A plot of the relative abundance of a beam or other collection of ions as a function of the mass-to-charge ratio (m/z)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000294"^^xsd:string ; a owl:Class ; rdfs:label "mass spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1000524, obo:MS_1000559 . obo:MS_1000295 obo:IAO_0000115 "OBSOLETE An arrangement for a double-focusing mass spectrometer in which a deflection of ?/(4 ?(2)) radians in a radial electric field is followed by a magnetic deflection of ?/2 radians."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000295"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "mattauch-herzog geometry"^^xsd:string ; owl:deprecated true . obo:MS_1000296 obo:IAO_0000115 "OBSOLETE An arrangement for a double-focusing mass spectrometer in which a deflection of ?/2 radians in a radial electric field analyzer is followed by a magnetic deflection of ?/3 radians."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000296"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "nier-johnson geometry"^^xsd:string ; owl:deprecated true . obo:MS_1000297 obo:IAO_0000115 "OBSOLETE A device that permits the trapping of ions by means of an alternating current voltage. The ejection of ions with a m/z less than a prescribed value and retention of those with higher mass depends on the application of radio frequency voltages between a ring electrode and two end-cap electrodes to confine the ions in a circular path. The choice of these voltages determines the m/z below which ions are ejected."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "quadrupole ion trap"^^xsd:string ; oboInOwl:id "MS:1000297"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it is redundant to quadrupole ion trap."^^xsd:string ; rdfs:label "paul ion trap"^^xsd:string ; owl:deprecated true . obo:MS_1000298 obo:IAO_0000115 "OBSOLETE A mass spectrometer in which the ions of different m/z are separated by means of crossed electric and magnetic fields in such a way that the selected ions follow a prolate trochoidal path."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000298"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term mass spectrometer was made obsolete."^^xsd:string ; rdfs:label "prolate traochoidal mass spectrometer"^^xsd:string ; owl:deprecated true . obo:MS_1000299 obo:IAO_0000115 "OBSOLETE An abbreviation of quadrupole ion storage trap. This term is synonymous with Paul Ion Trap. If so then add a synonym to paul and obsolete this term."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000299"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "quistor"^^xsd:string ; owl:deprecated true . obo:MS_1000300 obo:IAO_0000115 "A time-of-flight mass spectrometer that uses a static electric field to reverse the direction of travel of the ions entering it. A reflectron improves mass resolution by assuring that ions of the same m/z but different kinetic energy arrive at the detector at the same time."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000300"^^xsd:string ; a owl:Class ; rdfs:label "reflectron"^^xsd:string ; rdfs:subClassOf obo:MS_1000597 . obo:MS_1000301 obo:IAO_0000115 "OBSOLETE A mass spectrometer consisting of one or more magnetic sectors for m/z selection in a beam of ions. Such instruments may also have one or more electric sectors for energy selection."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000301"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term mass spectrometer was made obsolete."^^xsd:string ; rdfs:label "sector mass spectrometer"^^xsd:string ; owl:deprecated true . obo:MS_1000302 obo:IAO_0000115 "OBSOLETE A mass spectrometer designed for mass spectrometry/mass spectrometry."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000302"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term mass spectrometer was made obsolete."^^xsd:string ; rdfs:label "tandem mass spectrometer"^^xsd:string ; owl:deprecated true . obo:MS_1000303 obo:IAO_0000115 "OBSOLETE A mass spectrometer that consists of four parallel rods whose centers form the corners of a square and whose opposing poles are connected. The voltage applied to the rods is a superposition of a static potential and a sinusoidal radio frequency potential. The motion of an ion in the x and y dimensions is described by the Matthieu equation whose solutions show that ions in a particular m/z range can be transmitted along the z axis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000303"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term mass spectrometer was made obsolete."^^xsd:string ; rdfs:label "transmission quadrupole mass spectrometer"^^xsd:string ; owl:deprecated true . obo:MS_1000304 obo:IAO_0000115 "The electrical potential used to impart kinetic energy to ions in a mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000304"^^xsd:string ; a owl:Class ; rdfs:label "accelerating voltage"^^xsd:string ; rdfs:subClassOf obo:MS_1000487, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000218 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000305 obo:IAO_0000115 "OBSOLETE The circular motion of a charged particle moving at velocity v in a magnetic field B that results from the force qvB."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000305"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term m/z Separation Method was made obsolete."^^xsd:string ; rdfs:label "cyclotron motion"^^xsd:string ; owl:deprecated true . obo:MS_1000306 obo:IAO_0000115 "OBSOLETE A mass spectrometer in which m/z separation using one or more electric fields that vary with time."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000306"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term mass spectrometer was made obsolete."^^xsd:string ; rdfs:label "dynamic mass spectrometry"^^xsd:string ; owl:deprecated true . obo:MS_1000307 obo:IAO_0000115 "Three element charged particle lens in which the first and third elements are held at the same voltage. Such a lens produces focusing without changing the translational energy of the particle."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000307"^^xsd:string ; a owl:Class ; rdfs:label "einzel lens"^^xsd:string ; rdfs:subClassOf obo:MS_1000597 . obo:MS_1000308 obo:IAO_0000115 "The magnitude of the force per unit charge at a given point in space."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000308"^^xsd:string ; a owl:Class ; rdfs:label "electric field strength"^^xsd:string ; rdfs:subClassOf obo:MS_1000487, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000268 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000309 obo:IAO_0000115 "The region of a Mathieu stability diagram closest to the origin. Ions within this region can traverse the full length of a transmission quadrupole."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000309"^^xsd:string ; a owl:Class ; rdfs:label "first stability region"^^xsd:string ; rdfs:subClassOf obo:MS_1000597 . obo:MS_1000310 obo:IAO_0000115 "The electric or magnetic field that extends from the edge of a sector, lens or other ion optics element."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000310"^^xsd:string ; a owl:Class ; rdfs:label "fringing field"^^xsd:string ; rdfs:subClassOf obo:MS_1000597 . obo:MS_1000311 obo:IAO_0000115 "A device for measuring the kinetic energy of charged particles using a retarding field, time-of-flight, or the extent of deflection in an electric or magnetic field."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000311"^^xsd:string ; a owl:Class ; rdfs:label "kinetic energy analyzer"^^xsd:string ; rdfs:subClassOf obo:MS_1000597 . obo:MS_1000312 obo:IAO_0000115 "OBSOLETE The m/z value above which ions cannot be detected in a mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000312"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "mass limit"^^xsd:string ; owl:deprecated true . obo:MS_1000313 obo:IAO_0000115 "OBSOLETE The limit of m/z over which a mass spectrometer can detect ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000313"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "scan m/z range?"^^xsd:string ; owl:deprecated true . obo:MS_1000314 obo:IAO_0000115 "OBSOLETE The use of mass selective instability to eject ions of selected m/z values from an ion trap."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000314"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term m/z Separation Method was made obsolete."^^xsd:string ; rdfs:label "mass selective axial ejection"^^xsd:string ; owl:deprecated true . obo:MS_1000315 obo:IAO_0000115 "OBSOLETE A method for selective ejection of ions according to their m/z value in an ion trap."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000315"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term m/z Separation Method was made obsolete."^^xsd:string ; rdfs:label "mass selective instability"^^xsd:string ; owl:deprecated true . obo:MS_1000316 obo:IAO_0000115 "OBSOLETE A graphical representation expressed in terms of reduced coordinates that describes charged particle motion in a quadrupole mass filter or quadrupole ion trap mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000316"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term m/z Separation Method was made obsolete."^^xsd:string ; rdfs:label "mathieu stability diagram"^^xsd:string ; owl:deprecated true . obo:MS_1000317 obo:IAO_0000115 "OBSOLETE The pulsed acceleration of ions perpendicular to their direction of travel into a time-of-flight mass spectrometer. Ions may be extracted from a directional ion source, drift tube or m/z separation stage."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000317"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term m/z Separation Method was made obsolete."^^xsd:string ; rdfs:label "orthogonal extraction"^^xsd:string ; owl:deprecated true . obo:MS_1000318 obo:IAO_0000115 "OBSOLETE A mode of ion ejection in a quadrupole ion trap that relies on a auxiliary radio frequency voltage that is applied to the end-cap electrodes. The voltage is tuned to the secular frequency of a particular ion to eject it."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000318"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term m/z Separation Method was made obsolete."^^xsd:string ; rdfs:label "resonance ion ejection"^^xsd:string ; owl:deprecated true . obo:MS_1000319 obo:IAO_0000115 "The mutual repulsion of particles of like charge that limits the current in a charged-particle beam and causes beams or packets of charged particles to expand radially over time."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000319"^^xsd:string ; a owl:Class ; rdfs:label "space charge effect"^^xsd:string ; rdfs:subClassOf obo:MS_1000487 . obo:MS_1000320 obo:IAO_0000115 "An electric or magnetic field that does not change in time."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000320"^^xsd:string ; a owl:Class ; rdfs:label "static field"^^xsd:string ; rdfs:subClassOf obo:MS_1000597 . obo:MS_1000321 obo:IAO_0000115 "OBSOLETE A mass spectrum obtained by setting the electric sector field E to twice the value required to transmit the main ion-beam thereby allowing ions with a kinetic energy-to-charge ratio twice that of the main ion-beam to be transmitted. Product ions resulting from partial charge transfer reactions such as m^2+ + N ? m^+ + N^+ that occur in a collision cell (containing a gas, N) located in a field-free region preceding a magnetic and electric sector combination are detected. When the magnetic sector field B is scanned, a mass spectrum of singly charged product ions of doubly charged precursor ions is obtained."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000321"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term m/z Separation Method was made obsolete."^^xsd:string ; rdfs:label "2E Mass Spectrum"^^xsd:string ; owl:deprecated true . obo:MS_1000322 obo:IAO_0000115 "The measurement of the relative abundance of ions that result from a charge inversion reaction as a function of m/z."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000322"^^xsd:string ; a owl:Class ; rdfs:label "charge inversion mass spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1000294 . obo:MS_1000323 obo:IAO_0000115 "OBSOLETE Spectrum of all precursor ions that undergo a selected m/z decrement."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "constant neutral mass loss scan"^^xsd:string, "fixed neutral fragment scan"^^xsd:string ; oboInOwl:id "MS:1000323"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "constant neutral loss scan"^^xsd:string ; owl:deprecated true . obo:MS_1000324 obo:IAO_0000115 "OBSOLETE Spectrum of all precursor ions that undergo a selected m/z increment."^^xsd:string ; oboInOwl:hasExactSynonym "Constant Neutral Mass Gain Scan"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000324"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "constant neutral gain scan"^^xsd:string ; owl:deprecated true . obo:MS_1000325 obo:IAO_0000115 "A spectrum formed of all product ions that have been produced by gain of a pre-selected neutral mass following the reaction with and addition of the gas in a collision cell."^^xsd:string ; oboInOwl:hasExactSynonym "constant neutral mass gain spectrum"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000325"^^xsd:string ; a owl:Class ; rdfs:label "constant neutral gain spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1000294 . obo:MS_1000326 obo:IAO_0000115 "A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum."^^xsd:string ; oboInOwl:hasExactSynonym "constant neutral mass loss spectrum"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000326"^^xsd:string ; a owl:Class ; rdfs:label "constant neutral loss spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1000294 . obo:MS_1000327 obo:IAO_0000115 "OBSOLETE A type of MS2 experiments with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000327"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was replaced by consecutive reaction monitoring (MS:1000244)."^^xsd:string ; rdfs:label "consecutive reaction monitoring"^^xsd:string ; owl:deprecated true . obo:MS_1000328 obo:IAO_0000115 "A mass spectrum obtained using a sector mass spectrometer in which the electric sector field E is set to half the value required to transmit the main ion-beam. This spectrum records the signal from doubly charged product ions of charge-stripping reactions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000328"^^xsd:string ; a owl:Class ; rdfs:label "e/2 mass spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1000294 . obo:MS_1000329 obo:IAO_0000115 "OBSOLETE A scan in an instrument with two or more m/z analysers or in a sector mass spectrometer that incorporates at least one magnetic sector and one electric sector. Two or more of the analyzers are scanned simultaneously so as to preserve a predetermined relationship between scan parameters to produce a product ion, precursor ion or constant neutral loss spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000329"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "linked scan"^^xsd:string ; owl:deprecated true . obo:MS_1000330 obo:IAO_0000115 "OBSOLETE A linked scan at constant B/E may be performed on a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector. The magnetic field B and the electric field E are scanned simultaneously while the accelerating voltage V is held constant, so as to maintain the ratio of the two fields constant. This linked scan may record a product ion spectrum of dissociation or other reactions occurring in a field free region preceding the two sectors."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000330"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term linked scan was made obsolete."^^xsd:string ; rdfs:label "linked scan at constant b/e"^^xsd:string ; owl:deprecated true . obo:MS_1000331 obo:IAO_0000115 "OBSOLETE A linked scan performed on a sector instrument that incorporates at least one electric sector plus one magnetic sector. The electric sector field, E, and the accelerating voltage, V, are scanned simultaneously, so as to maintain the ratio E2/V at a constant value. This linked scan recordss a product ion spectrum of dissociation or other reactions occurring in a field free region (FFR) preceding the two sectors."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000331"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term linked scan was made obsolete."^^xsd:string ; rdfs:label "Linked Scan at Constant E2/V"^^xsd:string ; owl:deprecated true . obo:MS_1000332 obo:IAO_0000115 "OBSOLETE A linked scan performed on a sector mass spectrometer that incorporates at least one electric sector plus one magnetic sector in either order. The accelerating voltage is fixed and the magnetic field, B, and the electric field, E, are scanned simultaneously so as to maintain the ratio B2/E at a constant value. This linked scan records a precursor ion spectrum of dissociation or other reactions occurring in the field free region preceding the two sectors. The term B2/E linked scan is not recommended."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000332"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term linked scan was made obsolete."^^xsd:string ; rdfs:label "Linked Scan at Constant B2/E"^^xsd:string ; owl:deprecated true . obo:MS_1000333 obo:IAO_0000115 "OBSOLETE A linked scan performed on a sector instrument that incorporates at least one electric sector plus one magnetic sector placed in either order. The accelerating voltage is fixed while scanning the magnetic field, B, and electric field, E, simultaneously, so as to maintain the quantity B[1-(E/E0)]1/2/E at a constant value. This linked scan records a constant neutral mass loss (or gain) spectrum of dissociation or other reactions occurring in a field free region preceding the two sectors. E0 is the electric field required to transmit the singly charged analog of the desired neutral fragment. The term B[1-(E/E0)]1/2/E linked scan."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000333"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term linked scan was made obsolete."^^xsd:string ; rdfs:label "Linked Scan at Constant B[1-(E/E0)]^1/2 / E"^^xsd:string ; owl:deprecated true . obo:MS_1000334 obo:IAO_0000115 "OBSOLETE A tandem mass spectrometry method in which product ion spectra are recorded in a single m/z analyzer (such as a Paul Ion Trap or FTMS) in discreet steps over time. Ions in a specific m/z range are selected, dissociated, and the product ions analyzed sequentially in time."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000334"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term m/z Separation Method was made obsolete."^^xsd:string ; rdfs:label "MS/MS in Time"^^xsd:string ; owl:deprecated true . obo:MS_1000335 obo:IAO_0000115 "OBSOLETE A tandem mass spectrometry method in which product ion spectra are recorded in m/z analyzers separated in space. Specific m/z separation functions are designed such that in one section of the instrument ions are selected, dissociated in an intermediate region, and the product ions are then transmitted to another analyser for m/z separation and data acquisition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000335"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term m/z Separation Method was made obsolete."^^xsd:string ; rdfs:label "MS/MS in Space"^^xsd:string ; owl:deprecated true . obo:MS_1000336 obo:IAO_0000115 "The loss of an uncharged species during a rearrangement process. The value slot holds the molecular formula in Hill notation of the neutral loss molecule, see PMID: 21182243. This term must be used in conjunction with a child of the term MS:1002307 (fragmentation ion type)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000336"^^xsd:string ; a owl:Class ; rdfs:label "neutral loss"^^xsd:string ; rdfs:subClassOf obo:MS_1001055, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000337 obo:IAO_0000115 "OBSOLETE Serial product ions from dissociation of selected precursor ions where n refers to the number of stages of dissociation. The term granddaughter ion is deprecated."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "granddaughter ion"^^xsd:string ; oboInOwl:id "MS:1000337"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term product ion was made obsolete."^^xsd:string ; rdfs:label "nth generation product ion"^^xsd:string ; owl:deprecated true . obo:MS_1000338 obo:IAO_0000115 "OBSOLETE The specific scan functions or processes that record the appropriate generation of product ion or ions of any m/z selected precursor ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000338"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "nth generation product ion scan"^^xsd:string ; owl:deprecated true . obo:MS_1000339 obo:IAO_0000115 "OBSOLETE The mass spectrum recorded from any mass spectrometer in which the appropriate scan function can be set to record the appropriate generation product ion or ions of m/z selected precursor ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000339"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was merged with MSn spectrum (MS:1000580)."^^xsd:string ; rdfs:label "nth generation product ion spectrum"^^xsd:string ; owl:deprecated true . obo:MS_1000340 obo:IAO_0000115 "OBSOLETE An ion that reacts to form particular product ions. The reaction can be unimolecular dissociation, ion/molecule reaction, isomerization, or change in charge state. The term parent ion is deprecated."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "parent ion"^^xsd:string ; oboInOwl:id "MS:1000340"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion role was made obsolete."^^xsd:string ; rdfs:label "precursor ion"^^xsd:string ; owl:deprecated true . obo:MS_1000341 obo:IAO_0000115 "Spectrum generated by scanning precursor m/z while monitoring a fixed product m/z."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000341"^^xsd:string ; a owl:Class ; rdfs:label "precursor ion spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1000294 . obo:MS_1000342 obo:IAO_0000115 "OBSOLETE An ion formed as the product of a reaction involving a particular precursor ion. The reaction can be unimolecular dissociation to form fragment ions, an ion/molecule reaction, or simply involve a change in the number of charges. The term fragment ion is deprecated. The term daughter ion is deprecated."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "daughter ion"^^xsd:string ; oboInOwl:id "MS:1000342"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion role was made obsolete."^^xsd:string ; rdfs:label "product ion"^^xsd:string ; owl:deprecated true . obo:MS_1000343 obo:IAO_0000115 "OBSOLETE A mass spectrum recorded from any spectrometer in which the appropriate m/z separation scan function is set to record the product ion or ions of selected precursor ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000343"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was merged with MSn spectrum (MS:1000580)."^^xsd:string ; rdfs:label "product ion spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1000294 ; owl:deprecated true . obo:MS_1000344 obo:IAO_0000115 "OBSOLETE A charged product of a series of consecutive reactions that includes product ions, 1st generation product ions, 2nd generation product ions, etc. Given the sequential fragmentation scheme: M1+ -> M2+ -> M3+ -> M4+ -> M5+. M4+ is the precursor ion of M5+, a 1st generation product ion of M3+, a 2nd generation product ion of M2+ and a 3rd generation product ion of M1+."^^xsd:string ; oboInOwl:hasExactSynonym "Progeny Fragment Ion"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000344"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion chemical type was made obsolete."^^xsd:string ; rdfs:label "progeny ion"^^xsd:string ; owl:deprecated true . obo:MS_1000345 obo:IAO_0000115 "Detector comprising several ion collection elements, arranged in a line or grid where each element is an individual detector."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000345"^^xsd:string ; a owl:Class ; rdfs:label "array detector"^^xsd:string ; rdfs:subClassOf obo:MS_1000026 . obo:MS_1000346 obo:IAO_0000115 "A surface that is held at high potential such that ions striking the surface produce electrons that are subsequently detected."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000346"^^xsd:string ; a owl:Class ; rdfs:label "conversion dynode"^^xsd:string ; rdfs:subClassOf obo:MS_1000026 . obo:MS_1000347 obo:IAO_0000115 "One of a series of electrodes in a photomultiplier tube. Such an arrangement is able to amplify the current emitted by the photocathode."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000347"^^xsd:string ; a owl:Class ; rdfs:label "dynode"^^xsd:string ; rdfs:subClassOf obo:MS_1000026 . obo:MS_1000348 obo:IAO_0000115 "A detector for spatially disperse ion beams in which all ions simultaneously impinge on the detector plane."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000348"^^xsd:string ; a owl:Class ; rdfs:label "focal plane collector"^^xsd:string ; rdfs:subClassOf obo:MS_1000026 . obo:MS_1000349 obo:IAO_0000115 "A detector in which ions strike a conversion dynode to produce electrons that in turn strike a phosphor and the resulting photons are detected by a photomultiplier."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000349"^^xsd:string ; a owl:Class ; rdfs:label "ion-to-photon detector"^^xsd:string ; rdfs:subClassOf obo:MS_1000026 . obo:MS_1000350 obo:IAO_0000115 "A detector in which the ion beam is focused onto a point and the individual ions arrive sequentially."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000350"^^xsd:string ; a owl:Class ; rdfs:label "point collector"^^xsd:string ; rdfs:subClassOf obo:MS_1000026 . obo:MS_1000351 obo:IAO_0000115 "A detector in which the charged particles are accelerated to a high velocity and impinge on a conversion dynode, emitting secondary electrons. The electrons are accelerated onto a phosphor screen, which emits photons that are in turn detected using a photomultiplier or other photon detector."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000351"^^xsd:string ; a owl:Class ; rdfs:label "postacceleration detector"^^xsd:string ; rdfs:subClassOf obo:MS_1000026 . obo:MS_1000352 obo:IAO_0000115 "OBSOLETE Electrons that are ejected from a sample surface as a result of bombardment by a primary beam of atoms, ions or photons. WAS IN DETECTOR TYPE. Where should it go."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000352"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "secondary electron"^^xsd:string ; owl:deprecated true . obo:MS_1000353 obo:IAO_0000115 "Ion formed by the interaction of an ion with one or more atoms or molecules to form an ion containing all the constituent atoms of the precursor ion as well as the additional atoms from the associated atoms or molecules."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000353"^^xsd:string ; a owl:Class ; rdfs:label "adduct ion"^^xsd:string ; rdfs:subClassOf obo:MS_1003055 . obo:MS_1000354 obo:IAO_0000115 "OBSOLETE A planar cyclic ion that obeys the Hueckel (4n + 2) rule where n is a positive integer representing the number of conjugated Pi electrons. Charge delocalization leads to greater stability compared to a hypothetical localized structure."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000354"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion chemical type was made obsolete."^^xsd:string ; rdfs:label "aromatic ion"^^xsd:string ; owl:deprecated true . obo:MS_1000355 obo:IAO_0000115 "OBSOLETE Ions that have similar chemical valence, for example the acetyl cation CH3-CO+ and the thioacetyl cation CH3-CS+."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000355"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion chemical type was made obsolete."^^xsd:string ; rdfs:label "analog ion"^^xsd:string ; owl:deprecated true . obo:MS_1000356 obo:IAO_0000115 "OBSOLETE A planar cyclic ion with 4n ? electrons and is therefore not aromatic."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000356"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion chemical type was made obsolete."^^xsd:string ; rdfs:label "anti-aromatic ion"^^xsd:string ; owl:deprecated true . obo:MS_1000357 obo:IAO_0000115 "OBSOLETE An ion formed by the association of a cation with a neutral molecule, M, for example [M+ Na]+ and [M + K]+. The terms quasi-molecular ion and pseudo-molecular ion should not be used."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000357"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion chemical type was made obsolete."^^xsd:string ; rdfs:label "cationized molecule"^^xsd:string ; owl:deprecated true . obo:MS_1000358 obo:IAO_0000115 "OBSOLETE An ion formed by a multi-component atomic or molecular assembly of one or more ions with atoms or molecules, such as [(H20)nH]+, [(NaCl)nNa]+ and [(H3PO3)nHPO3]-."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000358"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion chemical type was made obsolete."^^xsd:string ; rdfs:label "cluster ion"^^xsd:string ; owl:deprecated true . obo:MS_1000359 obo:IAO_0000115 "OBSOLETE A radical cation or anion in which the charge site and the unpaired electron spin are both formally located in the same atom or group of atoms, as opposed to the spatially separate electronic configuration of distonic ions. The radical cation of methanol, CH3OH+, in which the charge and spin sites are formally located at the O atom is an example of a conventional ion, whereas .CH2-OH2+ is a distonic ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000359"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion chemical type was made obsolete."^^xsd:string ; rdfs:label "Conventional ion"^^xsd:string ; owl:deprecated true . obo:MS_1000360 obo:IAO_0000115 "OBSOLETE A product ion whose formation reveals structural or compositional information of its precursor. For instance, the phenyl cation in an electron ionization mass spectrum is a diagnostic ion for benzene and derivatives."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000360"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion chemical type was made obsolete."^^xsd:string ; rdfs:label "diagnostic ion"^^xsd:string ; owl:deprecated true . obo:MS_1000361 obo:IAO_0000115 "OBSOLETE An ion formed by ionization of a dimer or by the association of an ion with its neutral counterpart such as [M2]+ or [M-H-M]+."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000361"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion chemical type was made obsolete."^^xsd:string ; rdfs:label "dimeric ion"^^xsd:string ; owl:deprecated true . obo:MS_1000362 obo:IAO_0000115 "OBSOLETE A radical cation or anion in which the charge site and the unpaired electron spin cannot be both formally located in the same atom or group of atoms as it can be with a conventional ion. For example, CH2-OH2+ is a distonic ion whereas the radical cation of methanol, CH3OH+ is a conventional ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000362"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion chemical type was made obsolete."^^xsd:string ; rdfs:label "distonic ion"^^xsd:string ; owl:deprecated true . obo:MS_1000363 obo:IAO_0000115 "OBSOLETE A positively charged lower-valency ion of the nonmetallic elements. The methenium ion is CH3+. Other examples are the oxenium, sulfenium, nitrenium, phosphenium, and halenium ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000363"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion chemical type was made obsolete."^^xsd:string ; rdfs:label "enium ion"^^xsd:string ; owl:deprecated true . obo:MS_1000364 obo:IAO_0000115 "OBSOLETE A product ion that results from the dissociation of a precursor ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000364"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was replaced by product ion (MS:1000342)."^^xsd:string ; rdfs:label "fragment ion"^^xsd:string ; owl:deprecated true . obo:MS_1000365 obo:IAO_0000115 "OBSOLETE An atomic or molecular species having a net positive or negative electric charge."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000365"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "ion?"^^xsd:string ; owl:deprecated true . obo:MS_1000366 obo:IAO_0000115 "OBSOLETE An ion that differs only in the isotopic composition of one or more of its constituent atoms. For example CH4+ and CH3D+ or 10BF3 and 11BF3. The term isotopologue is a contraction of isotopic homologue."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000366"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion chemical type was made obsolete."^^xsd:string ; rdfs:label "Isotopologue ion"^^xsd:string ; owl:deprecated true . obo:MS_1000367 obo:IAO_0000115 "OBSOLETE Isomeric ion having the same numbers of each isotopic atom but differing in their positions. Isotopomeric ions can be either configurational isomers in which two atomic isotopes exchange positions or isotopic stereoisomers. The term isotopomer is a shortening of isotopic isomer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000367"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion chemical type was made obsolete."^^xsd:string ; rdfs:label "Isotopomeric ion"^^xsd:string ; owl:deprecated true . obo:MS_1000368 obo:IAO_0000115 "OBSOLETE An ion that is formed with internal energy higher than the threshold for dissociation but with a lifetime great enough to allow it to exit the ion source and enter the mass spectrometer where it dissociates before detection."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000368"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion stability type was made obsolete."^^xsd:string ; rdfs:label "metastable ion"^^xsd:string ; owl:deprecated true . obo:MS_1000369 obo:IAO_0000115 "OBSOLETE An ion formed by the removal of one or more electrons to form a positive ion or the addition off one or more electrons to form a negative ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000369"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion chemical type was made obsolete."^^xsd:string ; rdfs:label "molecular ion"^^xsd:string ; owl:deprecated true . obo:MS_1000370 obo:IAO_0000115 "OBSOLETE An atomic or molecular species having a net negative electric charge."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000370"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion chemical type was made obsolete."^^xsd:string ; rdfs:label "negative ion"^^xsd:string ; owl:deprecated true . obo:MS_1000371 obo:IAO_0000115 "OBSOLETE Hyper-coordinated carbonium ion such as the penta-coordinated norbornyl cation. Note: Tri-coordinated carbenium ions are termed classical ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000371"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion chemical type was made obsolete."^^xsd:string ; rdfs:label "non-classical ion"^^xsd:string ; owl:deprecated true . obo:MS_1000372 obo:IAO_0000115 "OBSOLETE A positively charged hypervalent ion of the nonmetallic elements. Examples are the methonium ion CH5+, the hydrogenonium ion H3+ and the hydronium ion H3O+. Other examples are the carbonium, oxonium, sulfonium, nitronium, diazonium, phosphonium, and halonium ions. Onium ions are not limited to monopositive ions; multiply-charged onium ions exist such as the gitonic (proximal) oxonium dication H4O2+ and the distonic oxonium dication H2O+-CH2-CH2-OH2+."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000372"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion chemical type was made obsolete."^^xsd:string ; rdfs:label "onium ion"^^xsd:string ; owl:deprecated true . obo:MS_1000373 obo:IAO_0000115 "OBSOLETE Most abundant ion of an isotope cluster, such as the 11B79Br2 81Br+ ion of m/z 250 of the cluster of isotopologue molecular ions of BBr3. The term principal ion has also been used to describe ions that have been artificially isotopically enriched in one or more positions such as CH3 13CH3+ or CH2D2 +, but those are best defined as isotopologue ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000373"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion chemical type was made obsolete."^^xsd:string ; rdfs:label "principal ion"^^xsd:string ; owl:deprecated true . obo:MS_1000374 obo:IAO_0000115 "OBSOLETE An atomic or molecular species having a net positive electric charge."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000374"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion chemical type was made obsolete."^^xsd:string ; rdfs:label "positive ion"^^xsd:string ; owl:deprecated true . obo:MS_1000375 obo:IAO_0000115 "OBSOLETE An ion formed by interaction of a neutral molecule with a proton and represented by the symbol [M + H]+, where M is the neutral molecule. The term 'protonated molecular ion,' 'quasi-molecular ion' and 'pseudo-molecular ion' are not recommended."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000375"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion chemical type was made obsolete."^^xsd:string ; rdfs:label "protonated molecule"^^xsd:string ; owl:deprecated true . obo:MS_1000376 obo:IAO_0000115 "OBSOLETE An ion, either a cation or anion, containing unpaired electrons in its ground state. The unpaired electron is denoted by a superscript dot alongside the superscript symbol for charge, such as for the molecular ion of a molecule M, that is, M+. Radical ions with more than one charge and/or more than one unpaired electron are denoted such as M(2+)(2). Unless the positions of the unpaired electron and charge can be associated with specific atoms, superscript charge designation should be placed before the superscript dot designation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000376"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion chemical type was made obsolete."^^xsd:string ; rdfs:label "radical ion"^^xsd:string ; owl:deprecated true . obo:MS_1000377 obo:IAO_0000115 "OBSOLETE A stable ion whose structure is known with certainty. These ions are usually formed by direct ionization of a neutral molecule of known structure and are used to verify by comparison the structure of an unknown ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000377"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion chemical type was made obsolete."^^xsd:string ; rdfs:label "reference ion"^^xsd:string ; owl:deprecated true . obo:MS_1000378 obo:IAO_0000115 "OBSOLETE An ion with internal energy sufficiently low that it does not rearrange or dissociate prior to detection in a mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000378"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion stability type was made obsolete."^^xsd:string ; rdfs:label "stable ion"^^xsd:string ; owl:deprecated true . obo:MS_1000379 obo:IAO_0000115 "OBSOLETE An ion with sufficient energy to dissociate within the ion source."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000379"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion stability type was made obsolete."^^xsd:string ; rdfs:label "unstable ion"^^xsd:string ; owl:deprecated true . obo:MS_1000380 obo:IAO_0000115 "A process whereby an electron is removed from an atom, ion, or molecule to produce an ion in its lowest energy state."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000380"^^xsd:string ; a owl:Class ; rdfs:label "adiabatic ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000381 obo:IAO_0000115 "An ionization process in which two excited atoms or molecules react to form a single positive ion and an electron."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000381"^^xsd:string ; a owl:Class ; rdfs:label "associative ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000382 obo:IAO_0000115 "Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000382"^^xsd:string ; a owl:Class ; rdfs:label "atmospheric pressure photoionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000240 . obo:MS_1000383 obo:IAO_0000115 "The formation of a neutral when a negative ion in a discrete state with an energy greater than the detachment threshold loses an electron spontaneously without further interaction with an energy source."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000383"^^xsd:string ; a owl:Class ; rdfs:label "autodetachment"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000384 obo:IAO_0000115 "The formation of an ion when an atom or molecule in a discrete state with an energy greater than the ionization threshold loses an electron spontaneously without further interaction with an energy source."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000384"^^xsd:string ; a owl:Class ; rdfs:label "autoionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000385 obo:IAO_0000115 "The interaction of an ion with an atom or molecule in which the charge on the ion is transferred to the neutral without the dissociation of either. Synonymous with charge transfer ionization."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000385"^^xsd:string ; a owl:Class ; rdfs:label "charge exchange ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000386 obo:IAO_0000115 "The reaction of a neutral molecule with an internally excited molecule to form an ion. Note that this term is not synonymous with chemical ionization."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000386"^^xsd:string ; a owl:Class ; rdfs:label "chemi-ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000387 obo:IAO_0000115 "The formation of ions by laser desorption ionization of a sample deposited on a porous silicon surface."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000387"^^xsd:string ; a owl:Class ; rdfs:label "desorption/ionization on silicon"^^xsd:string ; rdfs:subClassOf obo:MS_1000247 . obo:MS_1000388 obo:IAO_0000115 "The reaction of a gas-phase molecule that results in its decomposition to form products, one of which is an ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000388"^^xsd:string ; a owl:Class ; rdfs:label "dissociative ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000389 obo:IAO_0000115 "The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000389"^^xsd:string ; a owl:Class ; rdfs:label "electron ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000390 obo:IAO_0000115 "OBSOLETE The removal of solvent molecules clustered around a gas-phase ion by means of heating and/or collisions with gas molecules."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000390"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "ion desolvation"^^xsd:string ; owl:deprecated true . obo:MS_1000391 obo:IAO_0000115 "OBSOLETE The reaction of a molecule to form both a positive ion and negative ion fragment among the products."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000391"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "ion-pair formation"^^xsd:string ; owl:deprecated true . obo:MS_1000392 obo:IAO_0000115 "The ratio of the number of ions formed to the number of electrons, molecules or photons used."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000392"^^xsd:string ; a owl:Class ; rdfs:label "ionization efficiency"^^xsd:string ; rdfs:subClassOf obo:MS_1000482, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000393 obo:IAO_0000115 "The formation of gas-phase ions by the interaction of a pulsed laser with a solid or liquid material."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000393"^^xsd:string ; a owl:Class ; rdfs:label "laser desorption ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000247 . obo:MS_1000395 obo:IAO_0000115 "The ionization of any species by the interaction of a focused beam of ions with a sample that is dissolved in a solvent matrix. See also fast atom bombardment and secondary ionization."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000395"^^xsd:string ; a owl:Class ; rdfs:label "liquid secondary ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000396 obo:IAO_0000115 "A semi-permeable membrane separator that permits the passage of gas sample directly to the mass spectrometer ion source."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000396"^^xsd:string ; a owl:Class ; rdfs:label "membrane inlet"^^xsd:string ; rdfs:subClassOf obo:MS_1000007 . obo:MS_1000397 obo:IAO_0000115 "Electrospray ionization at a solvent flow rate of 300-800 nL/min where the flow is a result of a mechanical pump. See nanoelectrospray."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000397"^^xsd:string ; a owl:Class ; rdfs:label "microelectrospray"^^xsd:string ; rdfs:subClassOf obo:MS_1000073 . obo:MS_1000398 obo:IAO_0000115 "Electrospray ionization at a flow rate less than ~25 nL/min. Nanoelectrospray is synonymous with nanospray. The flow is dependent on the potenial on the tip of the electrospray needle and/or a gas presure to push the sample through the needle. See also electrospray ionization and microelectrospray."^^xsd:string ; oboInOwl:hasExactSynonym "nanospray"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000398"^^xsd:string ; a owl:Class ; rdfs:label "nanoelectrospray"^^xsd:string ; rdfs:subClassOf obo:MS_1000073 . obo:MS_1000399 obo:IAO_0000115 "Ionization that occurs through the interaction of two or more neutral gaseous species, at least one of which is internally excited."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000399"^^xsd:string ; a owl:Class ; rdfs:label "penning ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000400 obo:IAO_0000115 "The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000400"^^xsd:string ; a owl:Class ; rdfs:label "plasma desorption ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000401 obo:IAO_0000115 "OBSOLETE An electronic state capable of undergoing auto-Ionization."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000401"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "pre-ionization state"^^xsd:string ; owl:deprecated true . obo:MS_1000402 obo:IAO_0000115 "The process in which ions are ejected from a sample surface as a result of bombardment by a primary beam of atoms or ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000402"^^xsd:string ; a owl:Class ; rdfs:label "secondary ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000403 obo:IAO_0000115 "The formation of gas-phase ions without extensive fragmentation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000403"^^xsd:string ; a owl:Class ; rdfs:label "soft ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000404 obo:IAO_0000115 "The formation of ions from a solid material by an intermittent electrical discharge."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000404"^^xsd:string ; a owl:Class ; rdfs:label "spark ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000405 obo:IAO_0000115 "The formation of gas-phase ions from molecules that are deposited on a particular surface substrate that is irradiated with a pulsed laser. See also matrix-assisted laser desorption ionization."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000405"^^xsd:string ; a owl:Class ; rdfs:label "surface-assisted laser desorption ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000247 . obo:MS_1000406 obo:IAO_0000115 "The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000406"^^xsd:string ; a owl:Class ; rdfs:label "surface ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000407 obo:IAO_0000115 "The ionization of a neutral species through contact with a high temperature surface."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000407"^^xsd:string ; a owl:Class ; rdfs:label "thermal ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000408 obo:IAO_0000115 "A process in which an electron is removed from or added to a molecule without a change in the positions of the atoms. The resulting ion is typically in an excited vibrational state."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000408"^^xsd:string ; a owl:Class ; rdfs:label "vertical ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000409 obo:IAO_0000115 "OBSOLETE The reaction of an ion with a neutral species in which the reactants combine to form a single ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000409"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "association reaction"^^xsd:string ; owl:deprecated true . obo:MS_1000410 obo:IAO_0000115 "OBSOLETE A homolytic cleavage where the bond fission occurs between at the atom adjacent to the atom at the apparent charge site and an atom removed from the aparent charge site by two bonds."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000410"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "alpha-cleavage"^^xsd:string ; owl:deprecated true . obo:MS_1000411 obo:IAO_0000115 "OBSOLETE A homolytic cleavage where the bond fission occurs between at an atom removed from the apparent charge site atom by two bonds and an atom adjacent to that atom and removed from the aparent charge site by three bonds."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000411"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "beta-cleavage"^^xsd:string ; owl:deprecated true . obo:MS_1000412 obo:IAO_0000115 "An inert gas used for collisional deactivation of internally excited ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000412"^^xsd:string ; a owl:Class ; rdfs:label "buffer gas"^^xsd:string ; rdfs:subClassOf obo:MS_1000510, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000413 obo:IAO_0000115 "OBSOLETE Fragmentation of an odd electron ion in which the cleaved bond is adjacent to the apparent charge site. Synonymous with charge mediated fragmentation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000413"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "charge-induced fragmentation"^^xsd:string ; owl:deprecated true . obo:MS_1000414 obo:IAO_0000115 "OBSOLETE Reaction of an ion with a neutral species in which the charge on the product ion is reversed in sign with respect to the reactant ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000414"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "charge inversion reaction"^^xsd:string ; owl:deprecated true . obo:MS_1000415 obo:IAO_0000115 "OBSOLETE The reaction of an ion with a neutral species with a resulting change in the magnitude or sign of the charge on the reactant ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000415"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "charge permutation reaction"^^xsd:string ; owl:deprecated true . obo:MS_1000416 obo:IAO_0000115 "OBSOLETE Reaction of a positive ion with a neutral species in which the positive charge on the product ion is greater than that on the reactant ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000416"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "charge stripping reaction"^^xsd:string ; owl:deprecated true . obo:MS_1000417 obo:IAO_0000115 "OBSOLETE The reaction of an ion with a neutral species in which some or all of the charge of the reactant ion is transferred to the neutral species."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000417"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "charge transfer reaction"^^xsd:string ; owl:deprecated true . obo:MS_1000418 obo:IAO_0000115 "OBSOLETE The reaction of an ion with a neutral species in which the translational energy of the collision is converted into internal energy of the ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000418"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "collisional excitation"^^xsd:string ; owl:deprecated true . obo:MS_1000419 obo:IAO_0000115 "An inert gas used for collisional excitation. The term target gas is not recommended."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000419"^^xsd:string ; a owl:Class ; rdfs:label "collision gas"^^xsd:string ; rdfs:subClassOf obo:MS_1000510, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000420 obo:IAO_0000115 "OBSOLETE Fragmentation of a molecule or ion in which both electrons forming the single bond that is broken remain on one of the atoms that were originally bonded. This term is synonymous with heterolysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "heterolysis"^^xsd:string ; oboInOwl:id "MS:1000420"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "heterolytic cleavage"^^xsd:string ; owl:deprecated true . obo:MS_1000421 obo:IAO_0000115 "OBSOLETE Collision-induced dissociation process wherein the projectile ion has laboratory-frame translational energy higher than 1 keV."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000421"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "high energy collision"^^xsd:string ; owl:deprecated true . obo:MS_1000422 obo:IAO_0000115 "A collision-induced dissociation process that occurs in a beam-type collision cell."^^xsd:string ; oboInOwl:hasExactSynonym "HCD"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000422"^^xsd:string ; a owl:Class ; rdfs:label "beam-type collision-induced dissociation"^^xsd:string ; rdfs:subClassOf obo:MS_1000133 . obo:MS_1000423 obo:IAO_0000115 "OBSOLETE Fragmentation of an odd electron ion that results from one of a pair of electrons that form a bond between two atoms moving to form a pair with the odd electron on the atom at the apparent charge site. Fragmentation results in the formation of an even electron ion and a radical. This reaction involves the movement of a single electron and is symbolized by a single-barbed arrow. Synonymous with Homolysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "homolysis"^^xsd:string ; oboInOwl:id "MS:1000423"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "homolytic cleavage"^^xsd:string ; owl:deprecated true . obo:MS_1000424 obo:IAO_0000115 "OBSOLETE Exchange of hydrogen atoms with deuterium atoms in a molecule or pre-formed ion in solution prior to introduction into a mass spectrometer, or by reaction of an ion with a deuterated collision gas inside a mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000424"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "hydrogen/deuterium exchange"^^xsd:string ; owl:deprecated true . obo:MS_1000425 obo:IAO_0000115 "OBSOLETE A plot of the relative abundance of a beam or other collection of ions as a function their loss of translational energy in reactions with neutral species."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000425"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "ion energy loss spectrum"^^xsd:string ; owl:deprecated true . obo:MS_1000426 obo:IAO_0000115 "OBSOLETE The reaction of an ion with a neutral species in which one or more electrons are removed from either the ion or neutral."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000426"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "ionizing collision"^^xsd:string ; owl:deprecated true . obo:MS_1000427 obo:IAO_0000115 "OBSOLETE The reaction of an ion with a neutral molecule. The term ion-molecule reaction is not recommended because the hyphen suggests a single species that is that is both an ion and a molecule."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000427"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "ion/molecule reaction"^^xsd:string ; owl:deprecated true . obo:MS_1000428 obo:IAO_0000115 "OBSOLETE A particular type of transition state that lies between precursor and product ions on the reaction coordinate of some ion reactions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000428"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "ion/neutral complex"^^xsd:string ; owl:deprecated true . obo:MS_1000429 obo:IAO_0000115 "OBSOLETE A process wherein a charged species interacts with a neutral reactant to produce either chemically different species or changes in the internal energy of one or both of the reactants."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000429"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "ion/neutral species reaction"^^xsd:string ; owl:deprecated true . obo:MS_1000430 obo:IAO_0000115 "OBSOLETE In this reaction an association reaction is accompanied by the subsequent or simultaneous liberation of a different neutral species as a product."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000430"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "ion/neutral species exchange reaction"^^xsd:string ; owl:deprecated true . obo:MS_1000431 obo:IAO_0000115 "OBSOLETE An approach to determination of ion thermodynamic quantities by a bracketing procedure in which the relative probabilities of competing ion fragmentations are measured via the relative abundances of the reaction products. The extended kinetic method takes the associated entropy changes into account."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000431"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "kinetic method"^^xsd:string ; owl:deprecated true . obo:MS_1000432 obo:IAO_0000115 "OBSOLETE A collision between an ion and neutral species with translational energy approximately 1000 eV or lower."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000432"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "low energy collisions"^^xsd:string ; owl:deprecated true . obo:MS_1000433 obo:IAO_0000115 "A collision-induced dissociation process wherein the precursor ion has the translational energy lower than approximately 1000 eV. This process typically requires multiple collisions and the collisional excitation is cumulative."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000433"^^xsd:string ; a owl:Class ; rdfs:label "low-energy collision-induced dissociation"^^xsd:string ; rdfs:subClassOf obo:MS_1000044 . obo:MS_1000434 obo:IAO_0000115 "OBSOLETE A dissociation reaction triggered by transfer of a hydrogen atom via a 6-member transition state to the formal radical/charge site from a carbon atom four atoms removed from the charge/radical site (the gamma-carbon); subsequent rearrangement of electron density leads to expulsion of an olefin molecule. This term was originally applied to ketone ions where the charge/radical site is the carbonyl oxygen, but it is now more widely applied."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000434"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "McLafferty Rearrangement"^^xsd:string ; owl:deprecated true . obo:MS_1000435 obo:IAO_0000115 "A process wherein the reactant ion is dissociated as a result of absorption of one or more photons."^^xsd:string ; oboInOwl:hasExactSynonym "MPD"^^xsd:string, "multiphoton dissociation"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000435"^^xsd:string ; a owl:Class ; rdfs:label "photodissociation"^^xsd:string ; rdfs:subClassOf obo:MS_1000044 . obo:MS_1000436 obo:IAO_0000115 "OBSOLETE Reaction of an ion with a neutral species in which some but not all of the ion charge is transferred to the neutral."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000436"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "partial charge transfer reaction"^^xsd:string ; owl:deprecated true . obo:MS_1000437 obo:IAO_0000115 "OBSOLETE Chemical transformation involving an ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000437"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion was made obsolete."^^xsd:string ; rdfs:label "ion reaction"^^xsd:string ; owl:deprecated true . obo:MS_1000438 obo:IAO_0000115 "OBSOLETE Collision in which the translational energy of the fast-moving collision partner is increased at the expense of internal energy of one or both collision partners."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000438"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "superelastic collision"^^xsd:string ; owl:deprecated true . obo:MS_1000439 obo:IAO_0000115 "OBSOLETE A process wherein a reactant ion interacts with a surface to produce either chemically different species or a change in the internal energy of the reactant ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000439"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "surface-induced reaction"^^xsd:string ; owl:deprecated true . obo:MS_1000440 obo:IAO_0000115 "OBSOLETE Fragmentation reaction in which the molecularity is treated as one, irrespective of whether the dissociative state is that of a metastable ion produced in the ion source or results from collisional excitation of a stable ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000440"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion reaction was made obsolete."^^xsd:string ; rdfs:label "unimolecular dissociation"^^xsd:string ; owl:deprecated true . obo:MS_1000441 obo:IAO_0000115 "Function or process of the mass spectrometer where it records a spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000441"^^xsd:string ; a owl:Class ; rdfs:label "scan"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001458 ] . obo:MS_1000442 obo:IAO_0000115 "Representation of intensity values corresponding to a range of measurement space."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000442"^^xsd:string ; a owl:Class ; rdfs:label "spectrum"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001458 ] . obo:MS_1000443 obo:IAO_0000115 "Mass analyzer separates the ions according to their mass-to-charge ratio."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000443"^^xsd:string ; a owl:Class ; rdfs:label "mass analyzer type"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000451 ] . obo:MS_1000444 obo:IAO_0000115 "OBSOLETE Mass/charge separation Method."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000444"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "m/z Separation Method"^^xsd:string ; owl:deprecated true . obo:MS_1000445 obo:IAO_0000115 "OBSOLETE Sequential m/z separation method."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000445"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "sequential m/z separation method"^^xsd:string ; owl:deprecated true . obo:MS_1000446 obo:IAO_0000115 "The ionization of any species by the interaction of a focused beam of ions having a translational energy of several thousand eV with a solid sample."^^xsd:string ; oboInOwl:hasExactSynonym "FIB"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000446"^^xsd:string ; a owl:Class ; rdfs:label "fast ion bombardment"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1000447 obo:IAO_0000115 "Finnigan LTQ MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000447"^^xsd:string ; a owl:Class ; rdfs:label "LTQ"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000448 obo:IAO_0000115 "Finnigan LTQ FT MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000448"^^xsd:string ; a owl:Class ; rdfs:label "LTQ FT"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000449 obo:IAO_0000115 "Finnigan LTQ Orbitrap MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000449"^^xsd:string ; a owl:Class ; rdfs:label "LTQ Orbitrap"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000450 obo:IAO_0000115 "Finnigan LXQ MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000450"^^xsd:string ; a owl:Class ; rdfs:label "LXQ"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000451 obo:IAO_0000115 "Terms used to describe the Analyzer."^^xsd:string ; oboInOwl:hasExactSynonym "analyzer"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000451"^^xsd:string ; a owl:Class ; rdfs:label "mass analyzer"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000463 ] . obo:MS_1000452 obo:IAO_0000115 "Terms used to describe types of data processing."^^xsd:string ; oboInOwl:hasExactSynonym "data processing"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000452"^^xsd:string ; a owl:Class ; rdfs:label "data transformation"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001458 ] . obo:MS_1000453 obo:IAO_0000115 "The device that detects ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000453"^^xsd:string ; a owl:Class ; rdfs:label "detector"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000463 ] . obo:MS_1000454 obo:IAO_0000115 "OBSOLETE Additional terms to describe the instrument as outlined in the mass spec doc, Appendix 1, section 1.5."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000454"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "instrument additional description"^^xsd:string ; owl:deprecated true . obo:MS_1000455 obo:IAO_0000115 "Ion selection properties that are associated with a value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000455"^^xsd:string ; a owl:Class ; rdfs:label "ion selection attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1000547, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000442 ] . obo:MS_1000456 obo:IAO_0000115 "Terms to describe the precursor activation."^^xsd:string ; oboInOwl:hasExactSynonym "activation"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000456"^^xsd:string ; a owl:Class ; rdfs:label "precursor activation"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000442 ] . obo:MS_1000457 obo:IAO_0000115 "Terms to describe the sample."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000457"^^xsd:string ; a owl:Class ; rdfs:label "sample"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001458 ] . obo:MS_1000458 obo:IAO_0000115 "Terms to describe the source."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000458"^^xsd:string ; a owl:Class ; rdfs:label "source"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000463 ] . obo:MS_1000459 obo:IAO_0000115 "OBSOLETE Terms used to describe the spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000459"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "spectrum instrument description"^^xsd:string ; owl:deprecated true . obo:MS_1000460 obo:IAO_0000115 "OBSOLETE Terms to describe units."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000460"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was redundant with the Unit Ontology term unit (UO:0000000)."^^xsd:string ; rdfs:label "unit"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001458 ] ; owl:deprecated true . obo:MS_1000461 obo:IAO_0000115 "OBSOLETE Terms to describe Additional."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000461"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "additional description"^^xsd:string ; owl:deprecated true . obo:MS_1000462 obo:IAO_0000115 "Device used in the construction of a mass spectrometer to focus, contain or otherwise manipulate ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000462"^^xsd:string ; a owl:Class ; rdfs:label "ion optics"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000463 ] . obo:MS_1000463 obo:IAO_0000115 "Description of the instrument or the mass spectrometer."^^xsd:string ; oboInOwl:hasExactSynonym "instrument configuration"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000463"^^xsd:string ; a owl:Class ; rdfs:label "instrument"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001458 ] . obo:MS_1000464 obo:IAO_0000115 "OBSOLETE A unit of measurement for mass."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000464"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was redundant with Unit Ontology mass unit (UO:0000002)."^^xsd:string ; rdfs:label "mass unit"^^xsd:string ; owl:deprecated true . obo:MS_1000465 obo:IAO_0000115 "Relative orientation of the electromagnetic field during the selection and detection of ions in the mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000465"^^xsd:string ; a owl:Class ; rdfs:label "scan polarity"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000441 ] . obo:MS_1000466 obo:IAO_0000115 "OBSOLETE Alternating."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000466"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because ."^^xsd:string ; rdfs:label "alternating"^^xsd:string ; owl:deprecated true . obo:MS_1000467 obo:IAO_0000115 "The 1200 Series LC/MSD SL ion trap belongs to the Agilent LC/MSD ion trap family. It provides fast polarity switching and multisignal data acquisition capabilities in a single run while also providing 5 stages of automated data dependent MS2 and 11 stages of manual MS2."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000467"^^xsd:string ; a owl:Class ; rdfs:label "1200 series LC/MSD SL"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1000468 obo:IAO_0000115 "The 6110 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with an entry level single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6110 Quadrupole mass spectrometer has m/z range of 10-1500 and 2500 u/s scan speed. It proves useful for wide range of SIM quantitative applications."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000468"^^xsd:string ; a owl:Class ; rdfs:label "6110 Quadrupole LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1000469 obo:IAO_0000115 "The 6120A Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers. 6120 quadrupole mass spectrometer has m/z range of 10-1500, 2500 u/s scan speed and utilizes multiple signal acquisition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000469"^^xsd:string ; a owl:Class ; rdfs:label "6120A Quadrupole LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1000470 obo:IAO_0000115 "The 6130 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 series of Agilent mass spectrometers. The 6130 quadrupole mass spectrometer has m/z range of 2-3000, 2500 u/s scan speed in standard mode and 5250 u/s speed in fast-scan mode. It also uses multiple signal acquisition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000470"^^xsd:string ; a owl:Class ; rdfs:label "6130 Quadrupole LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1000471 obo:IAO_0000115 "The 6140 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6140 Quadrupole mass spectrometer has m/z range of 10-1350, 2500 u/s scan speed in standard mode and 10000 u/s speed in fast-scan mode. It also uses multiple signal acquisition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000471"^^xsd:string ; a owl:Class ; rdfs:label "6140 Quadrupole LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1000472 obo:IAO_0000115 "The 6210 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000472"^^xsd:string ; a owl:Class ; rdfs:label "6210 Time-of-Flight LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1000473 obo:IAO_0000115 "The 6310 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.35 resolution and mass range of 200-4000 with resolution of 3-4. The scan speed varies from 1650-27000 for the respective mass ranges."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000473"^^xsd:string ; a owl:Class ; rdfs:label "6310 Ion Trap LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1000474 obo:IAO_0000115 "The 6320 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000474"^^xsd:string ; a owl:Class ; rdfs:label "6320 Ion Trap LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1000475 obo:IAO_0000115 "The 6330 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000475"^^xsd:string ; a owl:Class ; rdfs:label "6330 Ion Trap LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1000476 obo:IAO_0000115 "The 6340 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000476"^^xsd:string ; a owl:Class ; rdfs:label "6340 Ion Trap LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1000477 obo:IAO_0000115 "The 6410 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. Mass range of the mass spectrometer is 15-1650 m/z, resolution is at three settings of 0.7 u (unit), 1.2 u (wide) and 2.5 u (widest). The mass accuracy for 6410 mass spectrometer is 0.1 across the mass range. The collision cell is a hexapole with linear acceleration."^^xsd:string ; oboInOwl:hasExactSynonym "6410 Triple Quad LC/MS"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000477"^^xsd:string ; a owl:Class ; rdfs:label "6410 Triple Quadrupole LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1000478 obo:IAO_0000115 "The LC/MSD VL ion trap is part of the family of Agilent ion trap mass spectrometers. It has ESI, APCI and APPI ion sources and is a useful ion trap when the amount of sample is not the limiting factor."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000478"^^xsd:string ; a owl:Class ; rdfs:label "1200 series LC/MSD VL"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1000479 obo:IAO_0000115 "OBSOLETE Terms that will likely become obsolete unless there are wails of dissent."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000479"^^xsd:string ; a owl:Class ; rdfs:comment "The whole branch purgatory term was made obsolete."^^xsd:string ; rdfs:label "purgatory"^^xsd:string ; owl:deprecated true . obo:MS_1000480 obo:IAO_0000115 "Analyzer properties that are associated with a value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000480"^^xsd:string ; a owl:Class ; rdfs:label "mass analyzer attribute"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000451 ] . obo:MS_1000481 obo:IAO_0000115 "Detector attribute recognized as a value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000481"^^xsd:string ; a owl:Class ; rdfs:label "detector attribute"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000453 ] . obo:MS_1000482 obo:IAO_0000115 "Property of a source device that need a value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000482"^^xsd:string ; a owl:Class ; rdfs:label "source attribute"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000458 ] . obo:MS_1000483 obo:IAO_0000115 "Thermo Fisher Scientific instrument model. The company has gone through several names including Thermo Finnigan, Thermo Scientific."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "Thermo Scientific"^^xsd:string ; oboInOwl:id "MS:1000483"^^xsd:string ; a owl:Class ; rdfs:label "Thermo Fisher Scientific instrument model"^^xsd:string ; rdfs:subClassOf obo:MS_1000031 . obo:MS_1000484 obo:IAO_0000115 "An ion trapping device that consists of an outer barrel-like electrode and a coaxial inner spindle-like electrode that form an electrostatic field with quadro-logarithmic potential distribution. The frequency of harmonic oscillations of the orbitally trapped ions along the axis of the electrostatic field is independent of the ion velocity and is inversely proportional to the square root of m/z so that the trap can be used as a mass analyzer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000484"^^xsd:string ; a owl:Class ; rdfs:label "orbitrap"^^xsd:string ; rdfs:subClassOf obo:MS_1000443 . obo:MS_1000485 obo:IAO_0000115 "Nanospray Inlet."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000485"^^xsd:string ; a owl:Class ; rdfs:label "nanospray inlet"^^xsd:string ; rdfs:subClassOf obo:MS_1000057 . obo:MS_1000486 obo:IAO_0000115 "Potential difference at the MS source in volts."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000486"^^xsd:string ; a owl:Class ; rdfs:label "source potential"^^xsd:string ; rdfs:subClassOf obo:MS_1000482, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000218 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000487 obo:IAO_0000115 "Ion optics involves components that help focus ion streams in mass spectrometry."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000487"^^xsd:string ; a owl:Class ; rdfs:label "ion optics attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1000462 . obo:MS_1000488 obo:IAO_0000115 "Hitachi instrument model."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000488"^^xsd:string ; a owl:Class ; rdfs:label "Hitachi instrument model"^^xsd:string ; rdfs:subClassOf obo:MS_1000031 . obo:MS_1000489 obo:IAO_0000115 "Varian instrument model."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000489"^^xsd:string ; a owl:Class ; rdfs:label "Varian instrument model"^^xsd:string ; rdfs:subClassOf obo:MS_1000031 . obo:MS_1000490 obo:IAO_0000115 "Agilent instrument model."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000490"^^xsd:string ; a owl:Class ; rdfs:label "Agilent instrument model"^^xsd:string ; rdfs:subClassOf obo:MS_1000031 . obo:MS_1000491 obo:IAO_0000115 "Dionex instrument model."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000491"^^xsd:string ; a owl:Class ; rdfs:label "Dionex instrument model"^^xsd:string ; rdfs:subClassOf obo:MS_1000031 . obo:MS_1000492 obo:IAO_0000115 "Thermo Electron Corporation instrument model."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000492"^^xsd:string ; a owl:Class ; rdfs:label "Thermo Electron instrument model"^^xsd:string ; rdfs:subClassOf obo:MS_1000483 . obo:MS_1000493 obo:IAO_0000115 "Finnigan MAT instrument model."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000493"^^xsd:string ; a owl:Class ; rdfs:label "Finnigan MAT instrument model"^^xsd:string ; rdfs:subClassOf obo:MS_1000483 . obo:MS_1000494 obo:IAO_0000115 "Thermo Scientific instrument model."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000494"^^xsd:string ; a owl:Class ; rdfs:label "Thermo Scientific instrument model"^^xsd:string ; rdfs:subClassOf obo:MS_1000483 . obo:MS_1000495 obo:IAO_0000115 "Applied Biosystems instrument model."^^xsd:string ; oboInOwl:hasExactSynonym "ABI"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000495"^^xsd:string ; a owl:Class ; rdfs:label "Applied Biosystems instrument model"^^xsd:string ; rdfs:subClassOf obo:MS_1000031 . obo:MS_1000496 obo:IAO_0000115 "Instrument properties that are associated with a value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000496"^^xsd:string ; a owl:Class ; rdfs:label "instrument attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1000547, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000463 ] . obo:MS_1000497 obo:IAO_0000115 "Special scan mode where data with improved resolution is acquired. This is typically achieved by scanning a more narrow m/z window or scanning with a lower scan rate."^^xsd:string ; oboInOwl:hasExactSynonym "enhanced resolution scan"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000497"^^xsd:string ; a owl:Class ; rdfs:label "zoom scan"^^xsd:string ; rdfs:subClassOf obo:MS_1000503 . obo:MS_1000498 obo:IAO_0000115 "OBSOLETE Feature of the ion trap mass spectrometer where MS data is acquired over a mass range."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000498"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "full scan"^^xsd:string ; owl:deprecated true . obo:MS_1000499 obo:IAO_0000115 "Nonphysical characteristic attributed to a spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000499"^^xsd:string ; a owl:Class ; rdfs:label "spectrum attribute"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000442 ] . obo:MS_1000500 obo:IAO_0000115 "The lower m/z bound of a mass spectrometer scan window."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "mzRangeStop"^^xsd:string ; oboInOwl:id "MS:1000500"^^xsd:string ; a owl:Class ; rdfs:label "scan window upper limit"^^xsd:string ; rdfs:subClassOf obo:MS_1000549, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000501 obo:IAO_0000115 "The upper m/z bound of a mass spectrometer scan window."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "mzRangeStart"^^xsd:string ; oboInOwl:id "MS:1000501"^^xsd:string ; a owl:Class ; rdfs:label "scan window lower limit"^^xsd:string ; rdfs:subClassOf obo:MS_1000549, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000502 obo:IAO_0000115 "The time spent gathering data across a peak."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "Scan Duration"^^xsd:string ; oboInOwl:id "MS:1000502"^^xsd:string ; a owl:Class ; rdfs:label "dwell time"^^xsd:string ; rdfs:subClassOf obo:MS_1000503, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000031 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000503 obo:IAO_0000115 "Nonphysical characteristic attributed to a spectrum acquisition scan."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000503"^^xsd:string ; a owl:Class ; rdfs:label "scan attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1000547, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000441 ] . obo:MS_1000504 obo:IAO_0000115 "M/z value of the signal of highest intensity in the mass spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000504"^^xsd:string ; a owl:Class ; rdfs:label "base peak m/z"^^xsd:string ; rdfs:subClassOf obo:MS_1003058, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000505 obo:IAO_0000115 "The intensity of the greatest peak in the mass spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000505"^^xsd:string ; a owl:Class ; rdfs:label "base peak intensity"^^xsd:string ; rdfs:subClassOf obo:MS_1003058, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000131 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000132 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000814 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000905 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000269 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000506 obo:IAO_0000115 "OBSOLETE Ion Role."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000506"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion was made obsolete."^^xsd:string ; rdfs:label "ion role"^^xsd:string ; owl:deprecated true . obo:MS_1000507 obo:IAO_0000115 "Nonphysical characteristic attributed to an ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000507"^^xsd:string ; a owl:Class ; rdfs:label "ion property"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002806 ] . obo:MS_1000508 obo:IAO_0000115 "OBSOLETE Ion Type."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000508"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion was made obsolete."^^xsd:string ; rdfs:label "ion chemical type"^^xsd:string ; owl:deprecated true . obo:MS_1000509 obo:IAO_0000115 "Activation Energy."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000509"^^xsd:string ; a owl:Class ; rdfs:label "activation energy"^^xsd:string ; rdfs:subClassOf obo:MS_1000510, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000266 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000510 obo:IAO_0000115 "Precursor Activation Attribute."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000510"^^xsd:string ; a owl:Class ; rdfs:label "precursor activation attribute"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000456 ] . obo:MS_1000511 obo:IAO_0000115 "Stage number achieved in a multi stage mass spectrometry acquisition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000511"^^xsd:string ; a owl:Class ; rdfs:label "ms level"^^xsd:string ; rdfs:subClassOf obo:MS_1000499, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1000512 obo:IAO_0000115 "A string unique to Thermo instrument describing instrument settings for the scan."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000512"^^xsd:string ; a owl:Class ; rdfs:label "filter string"^^xsd:string ; rdfs:subClassOf obo:MS_1000503, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000513 obo:IAO_0000115 "A data array of values."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000513"^^xsd:string ; a owl:Class ; rdfs:label "binary data array"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000442 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000625 ] . obo:MS_1000514 obo:IAO_0000115 "A data array of m/z values."^^xsd:string ; oboInOwl:hasDbXref "binary-data-type:MS:1000521"^^xsd:string, "binary-data-type:MS:1000523"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000514"^^xsd:string ; a owl:Class ; rdfs:label "m/z array"^^xsd:string ; rdfs:subClassOf obo:MS_1000513, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ] . obo:MS_1000515 obo:IAO_0000115 "A data array of intensity values."^^xsd:string ; oboInOwl:hasDbXref "binary-data-type:MS:1000521"^^xsd:string, "binary-data-type:MS:1000523"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000515"^^xsd:string ; a owl:Class ; rdfs:label "intensity array"^^xsd:string ; rdfs:subClassOf obo:MS_1000513, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000131 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000132 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000814 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000905 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000269 ] . obo:MS_1000516 obo:IAO_0000115 "A data array of charge values."^^xsd:string ; oboInOwl:hasDbXref "binary-data-type:MS:1000519"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000516"^^xsd:string ; a owl:Class ; rdfs:label "charge array"^^xsd:string ; rdfs:subClassOf obo:MS_1000513 . obo:MS_1000517 obo:IAO_0000115 "A data array of signal-to-noise values."^^xsd:string ; oboInOwl:hasDbXref "binary-data-type:MS:1000521"^^xsd:string, "binary-data-type:MS:1000523"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000517"^^xsd:string ; a owl:Class ; rdfs:label "signal to noise array"^^xsd:string ; rdfs:subClassOf obo:MS_1000513 . obo:MS_1000518 obo:IAO_0000115 "Encoding type of binary data specifying the binary representation and precision, e.g. 64-bit float."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000518"^^xsd:string ; a owl:Class ; rdfs:label "binary data type"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000442 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000625 ] . obo:MS_1000519 obo:IAO_0000115 "Signed 32-bit little-endian integer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000519"^^xsd:string ; a owl:Class ; rdfs:label "32-bit integer"^^xsd:string ; rdfs:subClassOf obo:MS_1000518 . obo:MS_1000520 obo:IAO_0000115 "OBSOLETE Signed 16-bit float."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000520"^^xsd:string ; a owl:Class ; rdfs:label "16-bit float"^^xsd:string ; rdfs:subClassOf obo:MS_1000518 ; owl:deprecated true . obo:MS_1000521 obo:IAO_0000115 "32-bit precision little-endian floating point conforming to IEEE-754."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000521"^^xsd:string ; a owl:Class ; rdfs:label "32-bit float"^^xsd:string ; rdfs:subClassOf obo:MS_1000518 . obo:MS_1000522 obo:IAO_0000115 "Signed 64-bit little-endian integer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000522"^^xsd:string ; a owl:Class ; rdfs:label "64-bit integer"^^xsd:string ; rdfs:subClassOf obo:MS_1000518 . obo:MS_1000523 obo:IAO_0000115 "64-bit precision little-endian floating point conforming to IEEE-754."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000523"^^xsd:string ; a owl:Class ; rdfs:label "64-bit float"^^xsd:string ; rdfs:subClassOf obo:MS_1000518 . obo:MS_1000524 obo:IAO_0000115 "Describes the data content on the file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000524"^^xsd:string ; a owl:Class ; rdfs:label "data file content"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000577 ] . obo:MS_1000525 obo:IAO_0000115 "Way in which the spectrum is represented, either with regularly spaced data points or with a list of centroided peaks."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000525"^^xsd:string ; a owl:Class ; rdfs:label "spectrum representation"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000442 ] . obo:MS_1000526 obo:IAO_0000115 "Waters data file format found in a Waters RAW directory, generated from an MS acquisition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000526"^^xsd:string ; a owl:Class ; rdfs:label "Waters raw format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1000527 obo:IAO_0000115 "Highest m/z value observed in the m/z array."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000527"^^xsd:string ; a owl:Class ; rdfs:label "highest observed m/z"^^xsd:string ; rdfs:subClassOf obo:MS_1000808, obo:MS_1003058, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000528 obo:IAO_0000115 "Lowest m/z value observed in the m/z array."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000528"^^xsd:string ; a owl:Class ; rdfs:label "lowest observed m/z"^^xsd:string ; rdfs:subClassOf obo:MS_1000808, obo:MS_1003058, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000529 obo:IAO_0000115 "Serial Number of the instrument."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000529"^^xsd:string ; a owl:Class ; rdfs:label "instrument serial number"^^xsd:string ; rdfs:subClassOf obo:MS_1000496, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000530 obo:IAO_0000115 "Conversion of one file format to another."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000530"^^xsd:string ; a owl:Class ; rdfs:label "file format conversion"^^xsd:string ; rdfs:subClassOf obo:MS_1000452 . obo:MS_1000531 obo:IAO_0000115 "Software related to the recording or transformation of spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000531"^^xsd:string ; a owl:Class ; rdfs:label "software"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_0000000 ] . obo:MS_1000532 obo:IAO_0000115 "Thermo Finnigan software for data acquisition and analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000532"^^xsd:string ; a owl:Class ; rdfs:label "Xcalibur"^^xsd:string ; rdfs:subClassOf obo:MS_1000693, obo:MS_1001455, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000533 obo:IAO_0000115 "Thermo Finnigan software for data analysis of peptides and proteins."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "Bioworks Browser"^^xsd:string ; oboInOwl:id "MS:1000533"^^xsd:string ; a owl:Class ; rdfs:label "Bioworks"^^xsd:string ; rdfs:subClassOf obo:MS_1000693, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000534 obo:IAO_0000115 "Micromass software for data acquisition and analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000534"^^xsd:string ; a owl:Class ; rdfs:label "MassLynx"^^xsd:string ; rdfs:subClassOf obo:MS_1000694, obo:MS_1001455, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000535 obo:IAO_0000115 "Bruker software for data analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000535"^^xsd:string ; a owl:Class ; rdfs:label "FlexAnalysis"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000536 obo:IAO_0000115 "Applied Biosystems software for data acquisition and analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000536"^^xsd:string ; a owl:Class ; rdfs:label "Data Explorer"^^xsd:string ; rdfs:subClassOf obo:MS_1000691, obo:MS_1001455, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000537 obo:IAO_0000115 "Applied Biosystems software for data acquisition and analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000537"^^xsd:string ; a owl:Class ; rdfs:label "4700 Explorer"^^xsd:string ; rdfs:subClassOf obo:MS_1000691, obo:MS_1001455, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000538 obo:IAO_0000115 "A software for converting Waters raw directory format to mzXML or mzML. MassWolf was originally developed at the Institute for Systems Biology."^^xsd:string ; oboInOwl:hasExactSynonym "wolf"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000538"^^xsd:string ; a owl:Class ; rdfs:label "massWolf"^^xsd:string ; rdfs:subClassOf obo:MS_1001457 . obo:MS_1000539 obo:IAO_0000115 "Applied Biosystems MALDI-TOF data acquisition and analysis system."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000539"^^xsd:string ; a owl:Class ; rdfs:label "Voyager Biospectrometry Workstation System"^^xsd:string ; rdfs:subClassOf obo:MS_1000691, obo:MS_1001455, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000540 obo:IAO_0000115 "Bruker software for data acquisition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000540"^^xsd:string ; a owl:Class ; rdfs:label "FlexControl"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001455 . obo:MS_1000541 obo:IAO_0000115 "A software program for converting Thermo Finnigan RAW file format to mzXML or mzML. ReAdW was originally developed at the Institute for Systems Biology. Its whimsical interleaved spelling and capitalization is pronounced \"readraw\"."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000541"^^xsd:string ; a owl:Class ; rdfs:label "ReAdW"^^xsd:string ; rdfs:subClassOf obo:MS_1001457 . obo:MS_1000542 obo:IAO_0000115 "A software program for converting Applied Biosystems wiff file format to mzXML format. MzStar was originally developed at the Institute for Systems Biology. It is now obsoleted by the MzWiff program."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000542"^^xsd:string ; a owl:Class ; rdfs:label "MzStar"^^xsd:string ; rdfs:subClassOf obo:MS_1001457 . obo:MS_1000543 obo:IAO_0000115 "Data processing attribute used to describe the type of data processing performed on the data file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000543"^^xsd:string ; a owl:Class ; rdfs:label "data processing action"^^xsd:string ; rdfs:subClassOf obo:MS_1000452 . obo:MS_1000544 obo:IAO_0000115 "Conversion of a file format to Proteomics Standards Initiative mzML file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000544"^^xsd:string ; a owl:Class ; rdfs:label "Conversion to mzML"^^xsd:string ; rdfs:subClassOf obo:MS_1000530 . obo:MS_1000545 obo:IAO_0000115 "Conversion of a file format to Institute of Systems Biology mzXML file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000545"^^xsd:string ; a owl:Class ; rdfs:label "Conversion to mzXML"^^xsd:string ; rdfs:subClassOf obo:MS_1000530 . obo:MS_1000546 obo:IAO_0000115 "Conversion of a file format to Proteomics Standards Initiative mzData file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000546"^^xsd:string ; a owl:Class ; rdfs:label "Conversion to mzData"^^xsd:string ; rdfs:subClassOf obo:MS_1000530 . obo:MS_1000547 obo:IAO_0000115 "Object Attribute."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000547"^^xsd:string ; a owl:Class ; rdfs:label "object attribute"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001458 ] . obo:MS_1000548 obo:IAO_0000115 "Sample properties that are associated with a value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000548"^^xsd:string ; a owl:Class ; rdfs:label "sample attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1000547, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000457 ] . obo:MS_1000549 obo:IAO_0000115 "Selection window properties that are associated with a value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000549"^^xsd:string ; a owl:Class ; rdfs:label "selection window attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1000547, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000441 ] . obo:MS_1000550 obo:IAO_0000115 "OBSOLETE Time Unit."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000550"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was redundant with the Unit Ontology term time unit (UO:0000003)."^^xsd:string ; rdfs:label "time unit"^^xsd:string ; owl:deprecated true . obo:MS_1000551 obo:IAO_0000115 "SCIEX or Applied Biosystems|MDS SCIEX software for data acquisition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000551"^^xsd:string ; a owl:Class ; rdfs:label "Analyst"^^xsd:string ; rdfs:subClassOf obo:MS_1000690, obo:MS_1001455, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000552 obo:IAO_0000115 "OBSOLETE Maldi Spot Identifier."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000552"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "maldi spot identifier"^^xsd:string ; owl:deprecated true . obo:MS_1000553 obo:IAO_0000115 "A software program for converting Agilent MassHunter format to mzXML or mzML. Trapper was originally developed at the Institute for Systems Biology."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000553"^^xsd:string ; a owl:Class ; rdfs:label "Trapper"^^xsd:string ; rdfs:subClassOf obo:MS_1001457 . obo:MS_1000554 obo:IAO_0000115 "ThermoFinnigan LCQ Deca."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000554"^^xsd:string ; a owl:Class ; rdfs:label "LCQ Deca"^^xsd:string ; rdfs:subClassOf obo:MS_1000125 . obo:MS_1000555 obo:IAO_0000115 "LTQ Orbitrap Discovery."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000555"^^xsd:string ; a owl:Class ; rdfs:label "LTQ Orbitrap Discovery"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000556 obo:IAO_0000115 "LTQ Orbitrap XL."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000556"^^xsd:string ; a owl:Class ; rdfs:label "LTQ Orbitrap XL"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000557 obo:IAO_0000115 "LTQ FT Ultra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000557"^^xsd:string ; a owl:Class ; rdfs:label "LTQ FT Ultra"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000558 obo:IAO_0000115 "GC Quantum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000558"^^xsd:string ; a owl:Class ; rdfs:label "GC Quantum"^^xsd:string ; rdfs:subClassOf obo:MS_1000125 . obo:MS_1000559 obo:IAO_0000115 "Spectrum type."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000559"^^xsd:string ; a owl:Class ; rdfs:label "spectrum type"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000442 ] . obo:MS_1000560 obo:IAO_0000115 "The format of the file being used. This could be a instrument or vendor specific proprietary file format or a converted open file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000560"^^xsd:string ; a owl:Class ; rdfs:label "mass spectrometer file format"^^xsd:string ; rdfs:subClassOf obo:MS_1001459 . obo:MS_1000561 obo:IAO_0000115 "Checksum is a form of redundancy check, a simple way to protect the integrity of data by detecting errors in data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000561"^^xsd:string ; a owl:Class ; rdfs:label "data file checksum type"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000577 ] . obo:MS_1000562 obo:IAO_0000115 "Applied Biosystems WIFF file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000562"^^xsd:string ; a owl:Class ; rdfs:label "ABI WIFF format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1000563 obo:IAO_0000115 "Thermo Scientific RAW file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000563"^^xsd:string ; a owl:Class ; rdfs:label "Thermo RAW format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1000564 obo:IAO_0000115 "Proteomics Standards Inititative mzData file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000564"^^xsd:string ; a owl:Class ; rdfs:label "PSI mzData format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1000565 obo:IAO_0000115 "Micromass PKL file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000565"^^xsd:string ; a owl:Class ; rdfs:label "Micromass PKL format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1000566 obo:IAO_0000115 "Institute of Systems Biology mzXML file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000566"^^xsd:string ; a owl:Class ; rdfs:label "ISB mzXML format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1000567 obo:IAO_0000115 "Bruker/Agilent YEP file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000567"^^xsd:string ; a owl:Class ; rdfs:label "Bruker/Agilent YEP format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1000568 obo:IAO_0000115 "MD5 (Message-Digest algorithm 5) is a (now deprecated) cryptographic hash function with a 128-bit hash value used to check the integrity of files."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000568"^^xsd:string ; a owl:Class ; rdfs:label "MD5"^^xsd:string ; rdfs:subClassOf obo:MS_1000561, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000569 obo:IAO_0000115 "SHA-1 (Secure Hash Algorithm-1) is a cryptographic hash function designed by the National Security Agency (NSA). It is also used to verify file integrity. Since 2011 it has been deprecated by the NIST as a U. S. government standard."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000569"^^xsd:string ; a owl:Class ; rdfs:label "SHA-1"^^xsd:string ; rdfs:subClassOf obo:MS_1000561, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000570 obo:IAO_0000115 "Method used to combine the mass spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000570"^^xsd:string ; a owl:Class ; rdfs:label "spectra combination"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000442 ] . obo:MS_1000571 obo:IAO_0000115 "Spectra Sum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000571"^^xsd:string ; a owl:Class ; rdfs:label "sum of spectra"^^xsd:string ; rdfs:subClassOf obo:MS_1000570 . obo:MS_1000572 obo:IAO_0000115 "Compression Type."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000572"^^xsd:string ; a owl:Class ; rdfs:label "binary data compression type"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000442 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000625 ] . obo:MS_1000573 obo:IAO_0000115 "Spectra is combined by calculating the median of the spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000573"^^xsd:string ; a owl:Class ; rdfs:label "median of spectra"^^xsd:string ; rdfs:subClassOf obo:MS_1000570 . obo:MS_1000574 obo:IAO_0000115 "Zlib."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000574"^^xsd:string ; a owl:Class ; rdfs:label "zlib compression"^^xsd:string ; rdfs:subClassOf obo:MS_1000572 . obo:MS_1000575 obo:IAO_0000115 "Spectra is combined by calculating the mean of the spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000575"^^xsd:string ; a owl:Class ; rdfs:label "mean of spectra"^^xsd:string ; rdfs:subClassOf obo:MS_1000570 . obo:MS_1000576 obo:IAO_0000115 "No Compression."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000576"^^xsd:string ; a owl:Class ; rdfs:label "no compression"^^xsd:string ; rdfs:subClassOf obo:MS_1000572 . obo:MS_1000577 obo:IAO_0000115 "Data file from which an entity is sourced."^^xsd:string ; oboInOwl:hasExactSynonym "source file"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000577"^^xsd:string ; a owl:Class ; rdfs:label "source data file"^^xsd:string ; rdfs:subClassOf obo:MS_1000499, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001458 ] . obo:MS_1000578 obo:IAO_0000115 "LCQ Fleet."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000578"^^xsd:string ; a owl:Class ; rdfs:label "LCQ Fleet"^^xsd:string ; rdfs:subClassOf obo:MS_1000125 . obo:MS_1000579 obo:IAO_0000115 "Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment."^^xsd:string ; oboInOwl:hasExactSynonym "Q1 spectrum"^^xsd:string, "Q3 spectrum"^^xsd:string, "Single-Stage Mass Spectrometry"^^xsd:string, "full spectrum"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000579"^^xsd:string ; a owl:Class ; rdfs:label "MS1 spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1000294 . obo:MS_1000580 obo:IAO_0000115 "MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n."^^xsd:string ; oboInOwl:hasExactSynonym "multiple-stage mass spectrometry spectrum"^^xsd:string, "nth generation product ion spectrum"^^xsd:string, "product ion spectrum"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000580"^^xsd:string ; a owl:Class ; rdfs:label "MSn spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1000294 . obo:MS_1000581 obo:IAO_0000115 "Spectrum generated from MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000581"^^xsd:string ; a owl:Class ; rdfs:label "CRM spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1000294 . obo:MS_1000582 obo:IAO_0000115 "Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring)."^^xsd:string ; oboInOwl:hasExactSynonym "MIM spectrum"^^xsd:string, "multiple ion monitoring spectrum"^^xsd:string, "selected ion monitoring spectrum"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000582"^^xsd:string ; a owl:Class ; rdfs:label "SIM spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1000294 . obo:MS_1000583 obo:IAO_0000115 "Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space."^^xsd:string ; oboInOwl:hasExactSynonym "MRM spectrum"^^xsd:string, "multiple reaction monitoring spectrum"^^xsd:string, "selected reaction monitoring spectrum"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000583"^^xsd:string ; a owl:Class ; rdfs:label "SRM spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1000294 . obo:MS_1000584 obo:IAO_0000115 "Proteomics Standards Inititative mzML file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000584"^^xsd:string ; a owl:Class ; rdfs:label "mzML format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1000585 obo:IAO_0000115 "Details about a person or organization to contact in case of concern or discussion about the file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000585"^^xsd:string ; a owl:Class ; rdfs:label "contact attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1000547, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_0000000 ] . obo:MS_1000586 obo:IAO_0000115 "Name of the contact person or organization."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000586"^^xsd:string ; a owl:Class ; rdfs:label "contact name"^^xsd:string ; rdfs:subClassOf obo:MS_1000585, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000587 obo:IAO_0000115 "Postal address of the contact person or organization."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000587"^^xsd:string ; a owl:Class ; rdfs:label "contact address"^^xsd:string ; rdfs:subClassOf obo:MS_1000585, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000588 obo:IAO_0000115 "Uniform Resource Locator related to the contact person or organization."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000588"^^xsd:string ; a owl:Class ; rdfs:label "contact URL"^^xsd:string ; rdfs:subClassOf obo:MS_1000585, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000589 obo:IAO_0000115 "Email address of the contact person or organization."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000589"^^xsd:string ; a owl:Class ; rdfs:label "contact email"^^xsd:string ; rdfs:subClassOf obo:MS_1000585, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000590 obo:IAO_0000115 "Home institution of the contact person."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000590"^^xsd:string ; a owl:Class ; rdfs:label "contact affiliation"^^xsd:string ; rdfs:subClassOf obo:MS_1000585, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000591 obo:IAO_0000115 "A software program for converting Applied Biosystems wiff file format to the mzXML or mzML format. MzWiff is currently maintained at the Institute for Systems Biology. It replaces the slower mzStar program."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000591"^^xsd:string ; a owl:Class ; rdfs:label "MzWiff"^^xsd:string ; rdfs:subClassOf obo:MS_1001457 . obo:MS_1000592 obo:IAO_0000115 "A process of reducing spikes of intensity in order to reduce noise while preserving real peak signal. Many algorithms can be applied for this process."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000592"^^xsd:string ; a owl:Class ; rdfs:label "smoothing"^^xsd:string ; rdfs:subClassOf obo:MS_1000543 . obo:MS_1000593 obo:IAO_0000115 "A process of removal of varying intensities generated due to variable energy absorption before further processing can take place. Baseline reduction facilitates meaningful comparision between intensities of m/z values."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000593"^^xsd:string ; a owl:Class ; rdfs:label "baseline reduction"^^xsd:string ; rdfs:subClassOf obo:MS_1000543 . obo:MS_1000594 obo:IAO_0000115 "The removal of very low intensity data points that are likely to be spurious noise rather than real signal."^^xsd:string ; oboInOwl:hasExactSynonym "thresholding"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000594"^^xsd:string ; a owl:Class ; rdfs:label "low intensity data point removal"^^xsd:string ; rdfs:subClassOf obo:MS_1001486 . obo:MS_1000595 obo:IAO_0000115 "A data array of relative time offset values from a reference time."^^xsd:string ; oboInOwl:hasDbXref "binary-data-type:MS:1000521"^^xsd:string, "binary-data-type:MS:1000523"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000595"^^xsd:string ; a owl:Class ; rdfs:label "time array"^^xsd:string ; rdfs:subClassOf obo:MS_1000513, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000031 ] . obo:MS_1000596 obo:IAO_0000115 "An attribute of resolution when recording the detector response in absence of the analyte."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000596"^^xsd:string ; a owl:Class ; rdfs:label "measurement method"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001458 ] . obo:MS_1000597 obo:IAO_0000115 "The electrical potential used to impart kinetic energy to ions in a mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000597"^^xsd:string ; a owl:Class ; rdfs:label "ion optics type"^^xsd:string ; rdfs:subClassOf obo:MS_1000462 . obo:MS_1000598 obo:IAO_0000115 "A process to fragment ions in a mass spectrometer by inducing fragmentation of cations (e.g. peptides or proteins) by transferring electrons from radical-anions."^^xsd:string ; oboInOwl:hasExactSynonym "ETD"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000598"^^xsd:string ; a owl:Class ; rdfs:label "electron transfer dissociation"^^xsd:string ; rdfs:subClassOf obo:MS_1000044 . obo:MS_1000599 obo:IAO_0000115 "A process that involves precursor ion activation at high Q, a time delay to allow the precursor to fragment, then a rapid pulse to low Q where all fragment ions are trapped. The product ions can then be scanned out of the ion trap and detected."^^xsd:string ; oboInOwl:hasExactSynonym "PQD"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000599"^^xsd:string ; a owl:Class ; rdfs:label "pulsed q dissociation"^^xsd:string ; rdfs:subClassOf obo:MS_1000044 . obo:MS_1000600 obo:IAO_0000115 "Database application and analysis platform for proteomics."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000600"^^xsd:string ; a owl:Class ; rdfs:label "Proteios"^^xsd:string ; rdfs:subClassOf obo:MS_1001456, obo:MS_1001457 . obo:MS_1000601 obo:IAO_0000115 "Waters software for data analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000601"^^xsd:string ; a owl:Class ; rdfs:label "ProteinLynx Global Server"^^xsd:string ; rdfs:subClassOf obo:MS_1000694, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000602 obo:IAO_0000115 "Shimadzu MALDI-TOF instrument model."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000602"^^xsd:string ; a owl:Class ; rdfs:label "Shimadzu MALDI-TOF instrument model"^^xsd:string ; rdfs:subClassOf obo:MS_1000124 . obo:MS_1000603 obo:IAO_0000115 "Shimadzu Scientific Instruments instrument model."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000603"^^xsd:string ; a owl:Class ; rdfs:label "Shimadzu Scientific Instruments instrument model"^^xsd:string ; rdfs:subClassOf obo:MS_1000124 . obo:MS_1000604 obo:IAO_0000115 "Shimadzu Scientific Instruments LCMS-IT-TOF MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000604"^^xsd:string ; a owl:Class ; rdfs:label "LCMS-IT-TOF"^^xsd:string ; rdfs:subClassOf obo:MS_1000603 . obo:MS_1000605 obo:IAO_0000115 "Shimadzu Scientific Instruments LCMS-2010EV MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000605"^^xsd:string ; a owl:Class ; rdfs:label "LCMS-2010EV"^^xsd:string ; rdfs:subClassOf obo:MS_1000603 . obo:MS_1000606 obo:IAO_0000115 "Shimadzu Scientific Instruments LCMS-2010A MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000606"^^xsd:string ; a owl:Class ; rdfs:label "LCMS-2010A"^^xsd:string ; rdfs:subClassOf obo:MS_1000603 . obo:MS_1000607 obo:IAO_0000115 "Shimadzu Biotech AXIMA CFR MALDI-TOF MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000607"^^xsd:string ; a owl:Class ; rdfs:label "AXIMA CFR MALDI-TOF"^^xsd:string ; rdfs:subClassOf obo:MS_1000602 . obo:MS_1000608 obo:IAO_0000115 "Shimadzu Biotech AXIMA-QIT MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000608"^^xsd:string ; a owl:Class ; rdfs:label "AXIMA-QIT"^^xsd:string ; rdfs:subClassOf obo:MS_1000602 . obo:MS_1000609 obo:IAO_0000115 "Shimadzu Biotech AXIMA-CFR plus MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000609"^^xsd:string ; a owl:Class ; rdfs:label "AXIMA-CFR plus"^^xsd:string ; rdfs:subClassOf obo:MS_1000602 . obo:MS_1000610 obo:IAO_0000115 "Shimadzu Biotech AXIMA Performance MALDI-TOF/TOF MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000610"^^xsd:string ; a owl:Class ; rdfs:label "AXIMA Performance MALDI-TOF/TOF"^^xsd:string ; rdfs:subClassOf obo:MS_1000602 . obo:MS_1000611 obo:IAO_0000115 "Shimadzu Biotech AXIMA Confidence MALDI-TOF (curved field reflectron) MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000611"^^xsd:string ; a owl:Class ; rdfs:label "AXIMA Confidence MALDI-TOF"^^xsd:string ; rdfs:subClassOf obo:MS_1000602 . obo:MS_1000612 obo:IAO_0000115 "Shimadzu Biotech AXIMA Assurance Linear MALDI-TOF MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000612"^^xsd:string ; a owl:Class ; rdfs:label "AXIMA Assurance Linear MALDI-TOF"^^xsd:string ; rdfs:subClassOf obo:MS_1000602 . obo:MS_1000613 obo:IAO_0000115 "SEQUEST DTA file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000613"^^xsd:string ; a owl:Class ; rdfs:label "DTA format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1000614 obo:IAO_0000115 "Peak list file format used by ProteinLynx Global Server."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000614"^^xsd:string ; a owl:Class ; rdfs:label "ProteinLynx Global Server mass spectrum XML format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1000615 obo:IAO_0000115 "ProteoWizard software for data processing and analysis. Primarily developed by the labs of P. Malick and D. Tabb."^^xsd:string ; oboInOwl:hasExactSynonym "pwiz"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000615"^^xsd:string ; a owl:Class ; rdfs:label "ProteoWizard software"^^xsd:string ; rdfs:subClassOf obo:MS_1001456, obo:MS_1001457 . obo:MS_1000616 obo:IAO_0000115 "A user-defined scan configuration that specifies the instrumental settings in which a spectrum is acquired. An instrument may cycle through a list of preset scan configurations to acquire data. This is a more generic term for the Thermo \"scan event\", which is defined in the Thermo Xcalibur glossary as: a mass spectrometer scan that is defined by choosing the necessary scan parameter settings. Multiple scan events can be defined for each segment of time."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000616"^^xsd:string ; a owl:Class ; rdfs:label "preset scan configuration"^^xsd:string ; rdfs:subClassOf obo:MS_1000503, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000617 obo:IAO_0000115 "A data array of electromagnetic radiation wavelength values."^^xsd:string ; oboInOwl:hasDbXref "binary-data-type:MS:1000521"^^xsd:string, "binary-data-type:MS:1000523"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000617"^^xsd:string ; a owl:Class ; rdfs:label "wavelength array"^^xsd:string ; rdfs:subClassOf obo:MS_1000513, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000018 ] . obo:MS_1000618 obo:IAO_0000115 "Highest wavelength observed in an EMR spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000618"^^xsd:string ; a owl:Class ; rdfs:label "highest observed wavelength"^^xsd:string ; rdfs:subClassOf obo:MS_1000808, obo:MS_1003058, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000018 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000619 obo:IAO_0000115 "Lowest wavelength observed in an EMR spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000619"^^xsd:string ; a owl:Class ; rdfs:label "lowest observed wavelength"^^xsd:string ; rdfs:subClassOf obo:MS_1000808, obo:MS_1003058, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000018 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000620 obo:IAO_0000115 "OBSOLETE Spectrum generated from a photodiode array detector (ultraviolet/visible spectrum)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000620"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was replaced by absorption spectrum (MS:1000806)."^^xsd:string ; rdfs:label "PDA spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1000524, obo:MS_1000559 ; owl:deprecated true . obo:MS_1000621 obo:IAO_0000115 "An array detector used to record spectra in the ultraviolet and visible region of light."^^xsd:string ; oboInOwl:hasExactSynonym "PDA"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000621"^^xsd:string ; a owl:Class ; rdfs:label "photodiode array detector"^^xsd:string ; rdfs:subClassOf obo:MS_1000345 . obo:MS_1000622 obo:IAO_0000115 "Surveyor PDA."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000622"^^xsd:string ; a owl:Class ; rdfs:label "Surveyor PDA"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000623 obo:IAO_0000115 "Accela PDA."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000623"^^xsd:string ; a owl:Class ; rdfs:label "Accela PDA"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000624 obo:IAO_0000115 "Inductive detector."^^xsd:string ; oboInOwl:hasExactSynonym "image current detector"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000624"^^xsd:string ; a owl:Class ; rdfs:label "inductive detector"^^xsd:string ; rdfs:subClassOf obo:MS_1000026 . obo:MS_1000625 obo:IAO_0000115 "Representation of a chromatographic separation attribute measurement versus time."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000625"^^xsd:string ; a owl:Class ; rdfs:label "chromatogram"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001458 ] . obo:MS_1000626 obo:IAO_0000115 "Type of chromatogram measurement being represented."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000626"^^xsd:string ; a owl:Class ; rdfs:label "chromatogram type"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000625 ] . obo:MS_1000627 obo:IAO_0000115 "Representation of an array of the measurements of a specific single ion current versus time."^^xsd:string ; oboInOwl:hasExactSynonym "SIC chromatogram"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000627"^^xsd:string ; a owl:Class ; rdfs:label "selected ion current chromatogram"^^xsd:string ; rdfs:subClassOf obo:MS_1000810 . obo:MS_1000628 obo:IAO_0000115 "Representation of an array of the most intense peaks versus time."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000628"^^xsd:string ; a owl:Class ; rdfs:label "basepeak chromatogram"^^xsd:string ; rdfs:subClassOf obo:MS_1000810 . obo:MS_1000629 obo:IAO_0000115 "Threshold below which some action is taken."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000629"^^xsd:string ; a owl:Class ; rdfs:label "low intensity threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1000630, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000131 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000132 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000814 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000905 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000269 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000630 obo:IAO_0000115 "Data processing parameter used in the data processing performed on the data file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000630"^^xsd:string ; a owl:Class ; rdfs:label "data processing parameter"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001458 ] . obo:MS_1000631 obo:IAO_0000115 "Threshold above which some action is taken."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000631"^^xsd:string ; a owl:Class ; rdfs:label "high intensity threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1000630, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000131 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000132 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000814 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000905 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000269 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000632 obo:IAO_0000115 "Waters oa-ToF based Q-Tof Premier."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000632"^^xsd:string ; a owl:Class ; rdfs:label "Q-Tof Premier"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1000633 obo:IAO_0000115 "A possible charge state of the ion in a situation where the charge of an ion is known to be one of several possible values rather than a completely unknown value or determined to be a specific charge with reasonable certainty."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000633"^^xsd:string ; a owl:Class ; rdfs:label "possible charge state"^^xsd:string ; rdfs:subClassOf obo:MS_1000455, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1000634 obo:IAO_0000115 "ThermoFinnigan DSQ GC-MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000634"^^xsd:string ; a owl:Class ; rdfs:label "DSQ"^^xsd:string ; rdfs:subClassOf obo:MS_1000125 . obo:MS_1000635 obo:IAO_0000115 "Thermo Scientific ITQ 700 GC-MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000635"^^xsd:string ; a owl:Class ; rdfs:label "ITQ 700"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000636 obo:IAO_0000115 "Thermo Scientific ITQ 900 GC-MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000636"^^xsd:string ; a owl:Class ; rdfs:label "ITQ 900"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000637 obo:IAO_0000115 "Thermo Scientific ITQ 1100 GC-MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000637"^^xsd:string ; a owl:Class ; rdfs:label "ITQ 1100"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000638 obo:IAO_0000115 "Thermo Scientific LTQ XL MS with ETD."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000638"^^xsd:string ; a owl:Class ; rdfs:label "LTQ XL ETD"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000639 obo:IAO_0000115 "Thermo Scientific LTQ Orbitrap XL MS with ETD."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000639"^^xsd:string ; a owl:Class ; rdfs:label "LTQ Orbitrap XL ETD"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000640 obo:IAO_0000115 "Thermo Scientific DFS HR GC-MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000640"^^xsd:string ; a owl:Class ; rdfs:label "DFS"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000641 obo:IAO_0000115 "Thermo Scientific DSQ II GC-MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000641"^^xsd:string ; a owl:Class ; rdfs:label "DSQ II"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000642 obo:IAO_0000115 "Thermo Scientific MALDI LTQ XL MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000642"^^xsd:string ; a owl:Class ; rdfs:label "MALDI LTQ XL"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000643 obo:IAO_0000115 "Thermo Scientific MALDI LTQ Orbitrap MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000643"^^xsd:string ; a owl:Class ; rdfs:label "MALDI LTQ Orbitrap"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000644 obo:IAO_0000115 "Thermo Scientific TSQ Quantum Access MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000644"^^xsd:string ; a owl:Class ; rdfs:label "TSQ Quantum Access"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000645 obo:IAO_0000115 "Thermo Scientific Element XR HR-ICP-MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000645"^^xsd:string ; a owl:Class ; rdfs:label "Element XR"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000646 obo:IAO_0000115 "Thermo Scientific Element 2 HR-ICP-MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000646"^^xsd:string ; a owl:Class ; rdfs:label "Element 2"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000647 obo:IAO_0000115 "Thermo Scientific Element GD Glow Discharge MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000647"^^xsd:string ; a owl:Class ; rdfs:label "Element GD"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000648 obo:IAO_0000115 "Thermo Scientific GC IsoLink Isotope Ratio MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000648"^^xsd:string ; a owl:Class ; rdfs:label "GC IsoLink"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000649 obo:IAO_0000115 "Thermo Scientific Exactive MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000649"^^xsd:string ; a owl:Class ; rdfs:label "Exactive"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000650 obo:IAO_0000115 "Thermo Scientific software for data analysis of peptides and proteins."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000650"^^xsd:string ; a owl:Class ; rdfs:label "Proteome Discoverer"^^xsd:string ; rdfs:subClassOf obo:MS_1000693, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000651 obo:IAO_0000115 "SCIEX or Applied Biosystems|MDS SCIEX QTRAP 3200."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000651"^^xsd:string ; a owl:Class ; rdfs:label "3200 QTRAP"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1000652 obo:IAO_0000115 "SCIEX or Applied Biosystems|MDS SCIEX 4800 Plus MALDI TOF-TOF Analyzer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000652"^^xsd:string ; a owl:Class ; rdfs:label "4800 Plus MALDI TOF/TOF"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1000653 obo:IAO_0000115 "SCIEX or Applied Biosystems|MDS SCIEX API 3200 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000653"^^xsd:string ; a owl:Class ; rdfs:label "API 3200"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1000654 obo:IAO_0000115 "SCIEX or Applied Biosystems|MDS SCIEX API 5000 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000654"^^xsd:string ; a owl:Class ; rdfs:label "API 5000"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1000655 obo:IAO_0000115 "SCIEX or Applied Biosystems|MDS SCIEX QSTAR Elite."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000655"^^xsd:string ; a owl:Class ; rdfs:label "QSTAR Elite"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1000656 obo:IAO_0000115 "Applied Biosystems|MDS SCIEX QSTAR Pulsar."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000656"^^xsd:string ; a owl:Class ; rdfs:label "QSTAR Pulsar"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1000657 obo:IAO_0000115 "Applied Biosystems|MDS SCIEX QSTAR XL."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000657"^^xsd:string ; a owl:Class ; rdfs:label "QSTAR XL"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1000658 obo:IAO_0000115 "Applied Biosystems|MDS SCIEX 4800 Proteomics Analyzer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000658"^^xsd:string ; a owl:Class ; rdfs:label "4800 Proteomics Analyzer"^^xsd:string ; rdfs:subClassOf obo:MS_1000495 . obo:MS_1000659 obo:IAO_0000115 "SCIEX or Applied Biosystems software for data acquisition and analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000659"^^xsd:string ; a owl:Class ; rdfs:label "4000 Series Explorer Software"^^xsd:string ; rdfs:subClassOf obo:MS_1000690, obo:MS_1001455, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000661 obo:IAO_0000115 "SCIEX or Applied Biosystems software for data acquisition and analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000661"^^xsd:string ; a owl:Class ; rdfs:label "GPS Explorer"^^xsd:string ; rdfs:subClassOf obo:MS_1000690, obo:MS_1001455, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000662 obo:IAO_0000115 "SCIEX or Applied Biosystems|MDS SCIEX software metabolite identification."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000662"^^xsd:string ; a owl:Class ; rdfs:label "LightSight Software"^^xsd:string ; rdfs:subClassOf obo:MS_1000690, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000663 obo:IAO_0000115 "SCIEX or Applied Biosystems|MDS SCIEX software for protein ID and quant."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000663"^^xsd:string ; a owl:Class ; rdfs:label "ProteinPilot Software"^^xsd:string ; rdfs:subClassOf obo:MS_1000690, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000664 obo:IAO_0000115 "Applied Biosystems|MDS SCIEX software for tissue imaging."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000664"^^xsd:string ; a owl:Class ; rdfs:label "TissueView Software"^^xsd:string ; rdfs:subClassOf obo:MS_1000690, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000665 obo:IAO_0000115 "Applied Biosystems|MDS SCIEX software for metabolomics and biomarker profiling."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000665"^^xsd:string ; a owl:Class ; rdfs:label "MarkerView Software"^^xsd:string ; rdfs:subClassOf obo:MS_1000690, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000666 obo:IAO_0000115 "Applied Biosystems|MDS SCIEX software for MRM assay development."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000666"^^xsd:string ; a owl:Class ; rdfs:label "MRMPilot Software"^^xsd:string ; rdfs:subClassOf obo:MS_1000690, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000667 obo:IAO_0000115 "Applied Biosystems|MDS SCIEX software for bio-related data exploration."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000667"^^xsd:string ; a owl:Class ; rdfs:label "BioAnalyst"^^xsd:string ; rdfs:subClassOf obo:MS_1000690, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000668 obo:IAO_0000115 "Applied Biosystems|MDS SCIEX software for protein identification."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000668"^^xsd:string ; a owl:Class ; rdfs:label "Pro ID"^^xsd:string ; rdfs:subClassOf obo:MS_1000690, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000669 obo:IAO_0000115 "Applied Biosystems|MDS SCIEX software for protein ID and quant by ICAT."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000669"^^xsd:string ; a owl:Class ; rdfs:label "Pro ICAT"^^xsd:string ; rdfs:subClassOf obo:MS_1000690, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000670 obo:IAO_0000115 "Applied Biosystems|MDS SCIEX software for protein ID and quant by iTRAQ."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000670"^^xsd:string ; a owl:Class ; rdfs:label "Pro Quant"^^xsd:string ; rdfs:subClassOf obo:MS_1000690, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000671 obo:IAO_0000115 "Applied Biosystems|MDS SCIEX software for MS-BLAST identification."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000671"^^xsd:string ; a owl:Class ; rdfs:label "Pro BLAST"^^xsd:string ; rdfs:subClassOf obo:MS_1000690, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000672 obo:IAO_0000115 "SCIEX Cliquid software for data analysis and quantitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000672"^^xsd:string ; a owl:Class ; rdfs:label "Cliquid"^^xsd:string ; rdfs:subClassOf obo:MS_1000690 . obo:MS_1000673 obo:IAO_0000115 "Applied Biosystems|MDS SCIEX software for MRM assay development."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000673"^^xsd:string ; a owl:Class ; rdfs:label "MIDAS Workflow Designer"^^xsd:string ; rdfs:subClassOf obo:MS_1000690 . obo:MS_1000674 obo:IAO_0000115 "Applied Biosystems|MDS SCIEX software for MRM-based quantitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000674"^^xsd:string ; a owl:Class ; rdfs:label "MultiQuant"^^xsd:string ; rdfs:subClassOf obo:MS_1000690, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000675 obo:IAO_0000115 "The 6220 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000675"^^xsd:string ; a owl:Class ; rdfs:label "6220 Time-of-Flight LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1000676 obo:IAO_0000115 "The 6510 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000676"^^xsd:string ; a owl:Class ; rdfs:label "6510 Quadrupole Time-of-Flight LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1000677 obo:IAO_0000115 "The 6520A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 26,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000677"^^xsd:string ; a owl:Class ; rdfs:label "6520A Quadrupole Time-of-Flight LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1000678 obo:IAO_0000115 "Software for data acquisition of 6000 series instruments."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000678"^^xsd:string ; a owl:Class ; rdfs:label "MassHunter Data Acquisition"^^xsd:string ; rdfs:subClassOf obo:MS_1000689, obo:MS_1001455 . obo:MS_1000679 obo:IAO_0000115 "Software for open access data acquisition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000679"^^xsd:string ; a owl:Class ; rdfs:label "MassHunter Easy Access"^^xsd:string ; rdfs:subClassOf obo:MS_1000689, obo:MS_1001455 . obo:MS_1000680 obo:IAO_0000115 "Software for data analysis of data from 6000 series instruments."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000680"^^xsd:string ; a owl:Class ; rdfs:label "MassHunter Qualitative Analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1000689, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000681 obo:IAO_0000115 "Software for quantitation of Triple Quadrupole and Quadrupole Time-of-Flight data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000681"^^xsd:string ; a owl:Class ; rdfs:label "MassHunter Quantitative Analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1000689, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000682 obo:IAO_0000115 "Software for identification of metabolites."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000682"^^xsd:string ; a owl:Class ; rdfs:label "MassHunter Metabolite ID"^^xsd:string ; rdfs:subClassOf obo:MS_1000689, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000683 obo:IAO_0000115 "Software for protein characterization."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000683"^^xsd:string ; a owl:Class ; rdfs:label "MassHunter BioConfirm"^^xsd:string ; rdfs:subClassOf obo:MS_1000689, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000684 obo:IAO_0000115 "Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000684"^^xsd:string ; a owl:Class ; rdfs:label "Genespring MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000689, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000685 obo:IAO_0000115 "Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000685"^^xsd:string ; a owl:Class ; rdfs:label "MassHunter Mass Profiler"^^xsd:string ; rdfs:subClassOf obo:MS_1000689, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000686 obo:IAO_0000115 "Personal Metabolite Database for MassHunter Workstation. Software for identification of human metabolites."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000686"^^xsd:string ; a owl:Class ; rdfs:label "METLIN"^^xsd:string ; rdfs:subClassOf obo:MS_1000689, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000687 obo:IAO_0000115 "Software for protein identification and characterization of complex protein digest mixtures."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000687"^^xsd:string ; a owl:Class ; rdfs:label "Spectrum Mill for MassHunter Workstation"^^xsd:string ; rdfs:subClassOf obo:MS_1000689, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000688 obo:IAO_0000115 "Software for data analysis of 6300 series ion trap mass spectrometers."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000688"^^xsd:string ; a owl:Class ; rdfs:label "6300 Series Ion Trap Data Analysis Software"^^xsd:string ; rdfs:subClassOf obo:MS_1000689, obo:MS_1001455, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000689 obo:IAO_0000115 "Agilent software for data acquisition and analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000689"^^xsd:string ; a owl:Class ; rdfs:label "Agilent software"^^xsd:string ; rdfs:subClassOf obo:MS_1000531 . obo:MS_1000690 obo:IAO_0000115 "SCIEX or Applied Biosystems software for data acquisition and analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000690"^^xsd:string ; a owl:Class ; rdfs:label "SCIEX software"^^xsd:string ; rdfs:subClassOf obo:MS_1000531 . obo:MS_1000691 obo:IAO_0000115 "Applied Biosystems|MDS SCIEX software for data acquisition and analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000691"^^xsd:string ; a owl:Class ; rdfs:label "Applied Biosystems software"^^xsd:string ; rdfs:subClassOf obo:MS_1000531 . obo:MS_1000692 obo:IAO_0000115 "Bruker software for data acquisition and analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000692"^^xsd:string ; a owl:Class ; rdfs:label "Bruker software"^^xsd:string ; rdfs:subClassOf obo:MS_1000531 . obo:MS_1000693 obo:IAO_0000115 "Thermo Finnigan software for data acquisition and analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "Bioworks Browser"^^xsd:string ; oboInOwl:id "MS:1000693"^^xsd:string ; a owl:Class ; rdfs:label "Thermo Finnigan software"^^xsd:string ; rdfs:subClassOf obo:MS_1000531 . obo:MS_1000694 obo:IAO_0000115 "Waters software for data acquisition and analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000694"^^xsd:string ; a owl:Class ; rdfs:label "Waters software"^^xsd:string ; rdfs:subClassOf obo:MS_1000531 . obo:MS_1000695 obo:IAO_0000115 "Bruker Daltonics' apex ultra: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000695"^^xsd:string ; a owl:Class ; rdfs:label "apex ultra"^^xsd:string ; rdfs:subClassOf obo:MS_1001556 . obo:MS_1000696 obo:IAO_0000115 "Bruker Daltonics' autoflex III smartbeam: MALDI TOF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000696"^^xsd:string ; a owl:Class ; rdfs:label "autoflex III smartbeam"^^xsd:string ; rdfs:subClassOf obo:MS_1001534 . obo:MS_1000697 obo:IAO_0000115 "Bruker Daltonics' HCT Series."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000697"^^xsd:string ; a owl:Class ; rdfs:label "Bruker Daltonics HCT Series"^^xsd:string ; rdfs:subClassOf obo:MS_1000122 . obo:MS_1000698 obo:IAO_0000115 "Bruker Daltonics' HCTultra: ESI TOF, Nanospray, APCI, APPI."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000698"^^xsd:string ; a owl:Class ; rdfs:label "HCTultra"^^xsd:string ; rdfs:subClassOf obo:MS_1000697 . obo:MS_1000699 obo:IAO_0000115 "Bruker Daltonics' HCTultra PTM: ESI TOF, Nanospray, APCI, APPI, PTR."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000699"^^xsd:string ; a owl:Class ; rdfs:label "HCTultra PTM"^^xsd:string ; rdfs:subClassOf obo:MS_1000697 . obo:MS_1000700 obo:IAO_0000115 "Bruker Daltonics' HCTultra ETD II: ESI Q-TOF, Nanospray, APCI, APPI, ETD."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000700"^^xsd:string ; a owl:Class ; rdfs:label "HCTultra ETD II"^^xsd:string ; rdfs:subClassOf obo:MS_1000697 . obo:MS_1000701 obo:IAO_0000115 "Bruker Daltonics' microflex LT: MALDI TOF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000701"^^xsd:string ; a owl:Class ; rdfs:label "microflex LT"^^xsd:string ; rdfs:subClassOf obo:MS_1001534 . obo:MS_1000702 obo:IAO_0000115 "Bruker Daltonics' micrOTOF: ESI TOF, APCI, APPI."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000702"^^xsd:string ; a owl:Class ; rdfs:label "micrOTOF"^^xsd:string ; rdfs:subClassOf obo:MS_1001536 . obo:MS_1000703 obo:IAO_0000115 "Bruker Daltonics' micrOTOF-Q: ESI Q-TOF, Nanospray, APCI, APPI."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000703"^^xsd:string ; a owl:Class ; rdfs:label "micrOTOF-Q"^^xsd:string ; rdfs:subClassOf obo:MS_1001536 . obo:MS_1000704 obo:IAO_0000115 "Bruker Daltonics' micrOTOF-Q II: ESI Q-TOF, Nanospray, APCI, APPI."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000704"^^xsd:string ; a owl:Class ; rdfs:label "micrOTOF-Q II"^^xsd:string ; rdfs:subClassOf obo:MS_1001536 . obo:MS_1000705 obo:IAO_0000115 "Bruker Daltonics' ultraflex III TOF/TOF: MALDI TOF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000705"^^xsd:string ; a owl:Class ; rdfs:label "ultraflex III TOF/TOF"^^xsd:string ; rdfs:subClassOf obo:MS_1001534 . obo:MS_1000706 obo:IAO_0000115 "Bruker software for data acquisition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000706"^^xsd:string ; a owl:Class ; rdfs:label "apexControl"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001455 . obo:MS_1000707 obo:IAO_0000115 "Bruker software for data analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000707"^^xsd:string ; a owl:Class ; rdfs:label "BioTools"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000708 obo:IAO_0000115 "Bruker CLINPROT software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000708"^^xsd:string ; a owl:Class ; rdfs:label "CLINPROT"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000709 obo:IAO_0000115 "Bruker CLINPROT micro software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000709"^^xsd:string ; a owl:Class ; rdfs:label "CLINPROT micro"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000710 obo:IAO_0000115 "Bruker CLINPROT robot software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000710"^^xsd:string ; a owl:Class ; rdfs:label "CLINPROT robot"^^xsd:string ; rdfs:subClassOf obo:MS_1000692 . obo:MS_1000711 obo:IAO_0000115 "Bruker ClinProTools software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000711"^^xsd:string ; a owl:Class ; rdfs:label "ClinProTools"^^xsd:string ; rdfs:subClassOf obo:MS_1000692 . obo:MS_1000712 obo:IAO_0000115 "Bruker Compass software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000712"^^xsd:string ; a owl:Class ; rdfs:label "Compass"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000713 obo:IAO_0000115 "Bruker Compass for HCT/esquire software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000713"^^xsd:string ; a owl:Class ; rdfs:label "Compass for HCT/esquire"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000714 obo:IAO_0000115 "Bruker Compass for micrOTOF software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000714"^^xsd:string ; a owl:Class ; rdfs:label "Compass for micrOTOF"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000715 obo:IAO_0000115 "Bruker compass OpenAccess software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000715"^^xsd:string ; a owl:Class ; rdfs:label "Compass OpenAccess"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000716 obo:IAO_0000115 "Bruker compass Security Pack software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000716"^^xsd:string ; a owl:Class ; rdfs:label "Compass Security Pack"^^xsd:string ; rdfs:subClassOf obo:MS_1000692 . obo:MS_1000717 obo:IAO_0000115 "Bruker stand-alone software for data conversion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000717"^^xsd:string ; a owl:Class ; rdfs:label "CompassXport"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001457 . obo:MS_1000718 obo:IAO_0000115 "Bruker software library for data access."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000718"^^xsd:string ; a owl:Class ; rdfs:label "CompassXtract"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001457 . obo:MS_1000719 obo:IAO_0000115 "Bruker software for data analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000719"^^xsd:string ; a owl:Class ; rdfs:label "DataAnalysis"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000720 obo:IAO_0000115 "Bruker software for data acquisition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000720"^^xsd:string ; a owl:Class ; rdfs:label "dpControl"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001455 . obo:MS_1000721 obo:IAO_0000115 "Bruker software for data acquisition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000721"^^xsd:string ; a owl:Class ; rdfs:label "esquireControl"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001455 . obo:MS_1000722 obo:IAO_0000115 "Bruker software for data analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000722"^^xsd:string ; a owl:Class ; rdfs:label "flexImaging"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000723 obo:IAO_0000115 "Bruker GENOLINK software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000723"^^xsd:string ; a owl:Class ; rdfs:label "GENOLINK"^^xsd:string ; rdfs:subClassOf obo:MS_1000692 . obo:MS_1000724 obo:IAO_0000115 "Bruker GenoTools software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000724"^^xsd:string ; a owl:Class ; rdfs:label "GenoTools"^^xsd:string ; rdfs:subClassOf obo:MS_1000692 . obo:MS_1000725 obo:IAO_0000115 "Bruker software for data acquisition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000725"^^xsd:string ; a owl:Class ; rdfs:label "HCTcontrol"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001455 . obo:MS_1000726 obo:IAO_0000115 "Bruker software for data acquisition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000726"^^xsd:string ; a owl:Class ; rdfs:label "micrOTOFcontrol"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001455 . obo:MS_1000727 obo:IAO_0000115 "Bruker PolyTools software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000727"^^xsd:string ; a owl:Class ; rdfs:label "PolyTools"^^xsd:string ; rdfs:subClassOf obo:MS_1000692 . obo:MS_1000728 obo:IAO_0000115 "Bruker software for data analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000728"^^xsd:string ; a owl:Class ; rdfs:label "ProfileAnalysis"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000729 obo:IAO_0000115 "Bruker PROTEINEER software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000729"^^xsd:string ; a owl:Class ; rdfs:label "PROTEINEER"^^xsd:string ; rdfs:subClassOf obo:MS_1000692 . obo:MS_1000730 obo:IAO_0000115 "Bruker PROTEINEER dp software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000730"^^xsd:string ; a owl:Class ; rdfs:label "PROTEINEER dp"^^xsd:string ; rdfs:subClassOf obo:MS_1000692 . obo:MS_1000731 obo:IAO_0000115 "Bruker PROTEINEER fc software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000731"^^xsd:string ; a owl:Class ; rdfs:label "PROTEINEER fc"^^xsd:string ; rdfs:subClassOf obo:MS_1000692 . obo:MS_1000732 obo:IAO_0000115 "Bruker PROTEINEER spII software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000732"^^xsd:string ; a owl:Class ; rdfs:label "PROTEINEER spII"^^xsd:string ; rdfs:subClassOf obo:MS_1000692 . obo:MS_1000733 obo:IAO_0000115 "Bruker PROTEINEER-LC software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000733"^^xsd:string ; a owl:Class ; rdfs:label "PROTEINEER-LC"^^xsd:string ; rdfs:subClassOf obo:MS_1000692 . obo:MS_1000734 obo:IAO_0000115 "Bruker ProteinScape software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000734"^^xsd:string ; a owl:Class ; rdfs:label "ProteinScape"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001456 . obo:MS_1000735 obo:IAO_0000115 "BrukerPureDisk software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000735"^^xsd:string ; a owl:Class ; rdfs:label "PureDisk"^^xsd:string ; rdfs:subClassOf obo:MS_1000692 . obo:MS_1000736 obo:IAO_0000115 "Bruker software for data analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000736"^^xsd:string ; a owl:Class ; rdfs:label "QuantAnalysis"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001456, obo:MS_1001457 . obo:MS_1000737 obo:IAO_0000115 "Bruker software for data acquisition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000737"^^xsd:string ; a owl:Class ; rdfs:label "spControl"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001455 . obo:MS_1000738 obo:IAO_0000115 "Bruker TargetAnalysis software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000738"^^xsd:string ; a owl:Class ; rdfs:label "TargetAnalysis"^^xsd:string ; rdfs:subClassOf obo:MS_1000692 . obo:MS_1000739 obo:IAO_0000115 "Bruker WARP-LC software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000739"^^xsd:string ; a owl:Class ; rdfs:label "WARP-LC"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001139 . obo:MS_1000740 obo:IAO_0000115 "Parameter file used to configure the acquisition of raw data on the instrument."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000740"^^xsd:string ; a owl:Class ; rdfs:label "parameter file"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1000741 obo:IAO_0000115 "Conversion to dta format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000741"^^xsd:string ; a owl:Class ; rdfs:label "Conversion to dta"^^xsd:string ; rdfs:subClassOf obo:MS_1000530 . obo:MS_1000742 obo:IAO_0000115 "Thermo Finnigan SRF file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000742"^^xsd:string ; a owl:Class ; rdfs:label "Bioworks SRF format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560, obo:MS_1001040 . obo:MS_1000743 obo:IAO_0000115 "Thermo Scientific TSQ Quantum Ultra AM."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000743"^^xsd:string ; a owl:Class ; rdfs:label "TSQ Quantum Ultra AM"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000744 obo:IAO_0000115 "Mass-to-charge ratio of an selected ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000744"^^xsd:string ; a owl:Class ; rdfs:label "selected ion m/z"^^xsd:string ; rdfs:subClassOf obo:MS_1000455, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000745 obo:IAO_0000115 "The correction of the spectrum scan times, as used e.g. in label-free proteomics."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000745"^^xsd:string ; a owl:Class ; rdfs:label "retention time alignment"^^xsd:string ; rdfs:subClassOf obo:MS_1000543 . obo:MS_1000746 obo:IAO_0000115 "The removal of very high intensity data points."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000746"^^xsd:string ; a owl:Class ; rdfs:label "high intensity data point removal"^^xsd:string ; rdfs:subClassOf obo:MS_1001486 . obo:MS_1000747 obo:IAO_0000115 "The time that a data processing action was finished."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000747"^^xsd:string ; a owl:Class ; rdfs:label "completion time"^^xsd:string ; rdfs:subClassOf obo:MS_1000630, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_dateTime ] . obo:MS_1000748 obo:IAO_0000115 "ThermoFinnigan SSQ 7000 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000748"^^xsd:string ; a owl:Class ; rdfs:label "SSQ 7000"^^xsd:string ; rdfs:subClassOf obo:MS_1000493 . obo:MS_1000749 obo:IAO_0000115 "ThermoFinnigan TSQ 7000 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000749"^^xsd:string ; a owl:Class ; rdfs:label "TSQ 7000"^^xsd:string ; rdfs:subClassOf obo:MS_1000493 . obo:MS_1000750 obo:IAO_0000115 "ThermoFinnigan TSQ MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000750"^^xsd:string ; a owl:Class ; rdfs:label "TSQ"^^xsd:string ; rdfs:subClassOf obo:MS_1000493 . obo:MS_1000751 obo:IAO_0000115 "Thermo Scientific TSQ Quantum Ultra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000751"^^xsd:string ; a owl:Class ; rdfs:label "TSQ Quantum Ultra"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000752 obo:IAO_0000115 "TOPP (The OpenMS proteomics pipeline) software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000752"^^xsd:string ; a owl:Class ; rdfs:label "TOPP software"^^xsd:string ; rdfs:subClassOf obo:MS_1001456, obo:MS_1001457 . obo:MS_1000753 obo:IAO_0000115 "Removes the baseline from profile spectra using a top-hat filter."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000753"^^xsd:string ; a owl:Class ; rdfs:label "BaselineFilter"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1000754 obo:IAO_0000115 "Exports data from an OpenMS database to a file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000754"^^xsd:string ; a owl:Class ; rdfs:label "DBExporter"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1000755 obo:IAO_0000115 "Imports data to an OpenMS database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000755"^^xsd:string ; a owl:Class ; rdfs:label "DBImporter"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1000756 obo:IAO_0000115 "Converts between different MS file formats."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000756"^^xsd:string ; a owl:Class ; rdfs:label "FileConverter"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1000757 obo:IAO_0000115 "Extracts or manipulates portions of data from peak, feature or consensus feature files."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000757"^^xsd:string ; a owl:Class ; rdfs:label "FileFilter"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1000758 obo:IAO_0000115 "Merges several MS files into one file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000758"^^xsd:string ; a owl:Class ; rdfs:label "FileMerger"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1000759 obo:IAO_0000115 "Applies an internal calibration."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000759"^^xsd:string ; a owl:Class ; rdfs:label "InternalCalibration"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1000760 obo:IAO_0000115 "OBSOLETE Corrects retention time distortions between maps."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000760"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete, because it is replaced by the terms under the 'TOPP map aligner' (MS:1002147) branch."^^xsd:string ; rdfs:label "MapAligner"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 ; owl:deprecated true . obo:MS_1000761 obo:IAO_0000115 "Normalizes peak intensities in an MS run."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000761"^^xsd:string ; a owl:Class ; rdfs:label "MapNormalizer"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1000762 obo:IAO_0000115 "OBSOLETE Removes noise from profile spectra by using different smoothing techniques."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000762"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete, because it is replaced by the terms under the 'TOPP noise filter' (MS:1002131) branch."^^xsd:string ; rdfs:label "NoiseFilter"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 ; owl:deprecated true . obo:MS_1000763 obo:IAO_0000115 "OBSOLETE Finds mass spectrometric peaks in profile mass spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000763"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete, because it is replaced by the terms under the 'TOPP peak picker' (MS:1002134) branch."^^xsd:string ; rdfs:label "PeakPicker"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 ; owl:deprecated true . obo:MS_1000764 obo:IAO_0000115 "Transforms an LC/MS map into a resampled map or a png image."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000764"^^xsd:string ; a owl:Class ; rdfs:label "Resampler"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1000765 obo:IAO_0000115 "OBSOLETE Applies a filter to peak spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000765"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete, because it is replaced by the terms under the 'TOPP spectra filter' (MS:1002137) branch."^^xsd:string ; rdfs:label "SpectraFilter"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 ; owl:deprecated true . obo:MS_1000766 obo:IAO_0000115 "Applies time of flight calibration."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000766"^^xsd:string ; a owl:Class ; rdfs:label "TOFCalibration"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1000767 obo:IAO_0000115 "Describes how the native spectrum identifiers are formated."^^xsd:string ; oboInOwl:hasExactSynonym "nativeID format"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000767"^^xsd:string ; a owl:Class ; rdfs:label "native spectrum identifier format"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000577 ] . obo:MS_1000768 obo:IAO_0000115 "Native format defined by controllerType=xsd:nonNegativeInteger controllerNumber=xsd:positiveInteger scan=xsd:positiveInteger."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000768"^^xsd:string ; a owl:Class ; rdfs:label "Thermo nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767 . obo:MS_1000769 obo:IAO_0000115 "Native format defined by function=xsd:positiveInteger process=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000769"^^xsd:string ; a owl:Class ; rdfs:label "Waters nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767 . obo:MS_1000770 obo:IAO_0000115 "Native format defined by sample=xsd:nonNegativeInteger period=xsd:nonNegativeInteger cycle=xsd:nonNegativeInteger experiment=xsd:nonNegativeInteger."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000770"^^xsd:string ; a owl:Class ; rdfs:label "WIFF nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767 . obo:MS_1000771 obo:IAO_0000115 "Native format defined by scan=xsd:nonNegativeInteger."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000771"^^xsd:string ; a owl:Class ; rdfs:label "Bruker/Agilent YEP nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767 . obo:MS_1000772 obo:IAO_0000115 "Native format defined by scan=xsd:nonNegativeInteger."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000772"^^xsd:string ; a owl:Class ; rdfs:label "Bruker BAF nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767 . obo:MS_1000773 obo:IAO_0000115 "Native format defined by file=xsd:IDREF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000773"^^xsd:string ; a owl:Class ; rdfs:comment "The nativeID must be the same as the source file ID."^^xsd:string ; rdfs:label "Bruker FID nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767 . obo:MS_1000774 obo:IAO_0000115 "Native format defined by index=xsd:nonNegativeInteger."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000774"^^xsd:string ; a owl:Class ; rdfs:comment "Used for conversion of peak list files with multiple spectra, i.e. MGF, PKL, merged DTA files. Index is the spectrum number in the file, starting from 0."^^xsd:string ; rdfs:label "multiple peak list nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767 . obo:MS_1000775 obo:IAO_0000115 "Native format defined by file=xsd:IDREF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000775"^^xsd:string ; a owl:Class ; rdfs:comment "The nativeID must be the same as the source file ID. Used for conversion of peak list files with one spectrum per file, typically folder of PKL or DTAs, each sourceFileRef is different."^^xsd:string ; rdfs:label "single peak list nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767 . obo:MS_1000776 obo:IAO_0000115 "Native format defined by scan=xsd:nonNegativeInteger."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000776"^^xsd:string ; a owl:Class ; rdfs:comment "Used for conversion from mzXML, or DTA folder where native scan numbers can be derived."^^xsd:string ; rdfs:label "scan number only nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767 . obo:MS_1000777 obo:IAO_0000115 "Native format defined by spectrum=xsd:nonNegativeInteger."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000777"^^xsd:string ; a owl:Class ; rdfs:comment "Used for conversion from mzData. The spectrum id attribute is referenced."^^xsd:string ; rdfs:label "spectrum identifier nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767 . obo:MS_1000778 obo:IAO_0000115 "A process that infers the charge state of an MSn spectrum's precursor(s) by the application of some algorithm."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000778"^^xsd:string ; a owl:Class ; rdfs:label "charge state calculation"^^xsd:string ; rdfs:subClassOf obo:MS_1000543 . obo:MS_1000779 obo:IAO_0000115 "Infers charge state as single or ambiguously multiple by determining the fraction of intensity below the precursor m/z."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000779"^^xsd:string ; a owl:Class ; rdfs:label "below precursor intensity dominance charge state calculation"^^xsd:string ; rdfs:subClassOf obo:MS_1000778 . obo:MS_1000780 obo:IAO_0000115 "A process that recalculates existing precursor selected ions with one or more algorithmically determined precursor selected ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000780"^^xsd:string ; a owl:Class ; rdfs:label "precursor recalculation"^^xsd:string ; rdfs:subClassOf obo:MS_1000543 . obo:MS_1000781 obo:IAO_0000115 "Recalculates one or more precursor selected ions by peak detection in the isolation windows of high accuracy MS precursor scans."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000781"^^xsd:string ; a owl:Class ; rdfs:label "msPrefix precursor recalculation"^^xsd:string ; rdfs:subClassOf obo:MS_1000780 . obo:MS_1000782 obo:IAO_0000115 "Reduces intensity spikes by applying local polynomial regression (of degree k) on a distribution (of at least k+1 equally spaced points) to determine the smoothed value for each point. It tends to preserve features of the distribution such as relative maxima, minima and width, which are usually 'flattened' by other adjacent averaging techniques."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000782"^^xsd:string ; a owl:Class ; rdfs:label "Savitzky-Golay smoothing"^^xsd:string ; rdfs:subClassOf obo:MS_1000592 . obo:MS_1000783 obo:IAO_0000115 "Reduces intensity spikes by applying a modelling method known as locally weighted polynomial regression. At each point in the data set a low-degree polynomial is fit to a subset of the data, with explanatory variable values near the point whose response is being estimated. The polynomial is fit using weighted least squares, giving more weight to points near the point whose response is being estimated and less weight to points further away. The value of the regression function for the point is then obtained by evaluating the local polynomial using the explanatory variable values for that data point. The LOESS fit is complete after regression function values have been computed for each of the n data points. Many of the details of this method, such as the degree of the polynomial model and the weights, are flexible."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000783"^^xsd:string ; a owl:Class ; rdfs:label "LOWESS smoothing"^^xsd:string ; rdfs:subClassOf obo:MS_1000592 . obo:MS_1000784 obo:IAO_0000115 "Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function."^^xsd:string ; oboInOwl:hasExactSynonym "Weierstrass transform"^^xsd:string, "binomial smoothing"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000784"^^xsd:string ; a owl:Class ; rdfs:label "Gaussian smoothing"^^xsd:string ; rdfs:subClassOf obo:MS_1000592 . obo:MS_1000785 obo:IAO_0000115 "Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect."^^xsd:string ; oboInOwl:hasExactSynonym "box smoothing"^^xsd:string, "boxcar smoothing"^^xsd:string, "sliding average smoothing"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000785"^^xsd:string ; a owl:Class ; rdfs:label "moving average smoothing"^^xsd:string ; rdfs:subClassOf obo:MS_1000592 . obo:MS_1000786 obo:IAO_0000115 "A data array that contains data not covered by any other term in this group. Please do not use this term, if the binary data array type might be commonly used - contact the PSI-MS working group in order to have another CV term added."^^xsd:string ; oboInOwl:hasDbXref "binary-data-type:MS:1000519"^^xsd:string, "binary-data-type:MS:1000521"^^xsd:string, "binary-data-type:MS:1000522"^^xsd:string, "binary-data-type:MS:1000523"^^xsd:string, "binary-data-type:MS:1001479"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000786"^^xsd:string ; a owl:Class ; rdfs:label "non-standard data array"^^xsd:string ; rdfs:subClassOf obo:MS_1000513, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000787 obo:IAO_0000115 "Threshold at or below which some action is taken."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000787"^^xsd:string ; a owl:Class ; rdfs:label "inclusive low intensity threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1000630, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000269 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000131 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000132 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000814 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000905 ] . obo:MS_1000788 obo:IAO_0000115 "Threshold at or above which some action is taken."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000788"^^xsd:string ; a owl:Class ; rdfs:label "inclusive high intensity threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1000630, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000131 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000132 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000814 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000905 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000269 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000789 obo:IAO_0000115 "MS1 spectrum that is enriched in multiply-charged ions compared to singly-charged ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000789"^^xsd:string ; a owl:Class ; rdfs:label "enhanced multiply charged spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1000579 . obo:MS_1000790 obo:IAO_0000115 "MSn spectrum in which the product ions are collected after a time delay, which allows the observation of lower energy fragmentation processes after precursor ion activation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000790"^^xsd:string ; a owl:Class ; rdfs:label "time-delayed fragmentation spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1000580 . obo:MS_1000791 obo:IAO_0000115 "OBSOLETE Scan with enhanced resolution."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000791"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was merged with zoom scan (MS:1000497)."^^xsd:string ; rdfs:label "enhanced resolution scan"^^xsd:string ; owl:deprecated true . obo:MS_1000792 obo:IAO_0000115 "Isolation window parameter."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000792"^^xsd:string ; a owl:Class ; rdfs:label "isolation window attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1000547, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000441 ] . obo:MS_1000793 obo:IAO_0000115 "OBSOLETE The highest m/z being isolated in an isolation window."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000793"^^xsd:string ; a owl:Class ; rdfs:comment "This term was obsoleted in favour of using a target, lower, upper offset scheme. See terms 1000827-1000829."^^xsd:string ; rdfs:label "isolation window upper limit"^^xsd:string ; rdfs:subClassOf obo:MS_1000792, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] ; owl:deprecated true . obo:MS_1000794 obo:IAO_0000115 "OBSOLETE The lowest m/z being isolated in an isolation window."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000794"^^xsd:string ; a owl:Class ; rdfs:comment "This term was obsoleted in favour of using a target, lower, upper offset scheme. See terms 1000827-1000829."^^xsd:string ; rdfs:label "isolation window lower limit"^^xsd:string ; rdfs:subClassOf obo:MS_1000792, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] ; owl:deprecated true . obo:MS_1000795 obo:IAO_0000115 "Use this term if only one scan was recorded or there is no information about scans available."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000795"^^xsd:string ; a owl:Class ; rdfs:label "no combination"^^xsd:string ; rdfs:subClassOf obo:MS_1000570 . obo:MS_1000796 obo:IAO_0000115 "Free-form text title describing a spectrum, usually a series of key value pairs as used in an MGF file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000796"^^xsd:string ; a owl:Class ; rdfs:comment "This is the preferred storage place for the spectrum TITLE from an MGF peak list."^^xsd:string ; rdfs:label "spectrum title"^^xsd:string ; rdfs:subClassOf obo:MS_1000499, obo:MS_1001405, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000797 obo:IAO_0000115 "A list of scan numbers and or scan ranges associated with a peak list. If possible the list of scans should be converted to native spectrum identifiers instead of using this term."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000797"^^xsd:string ; a owl:Class ; rdfs:comment "This is the preferred storage place for the spectrum SCANS attribute from an MGF peak list."^^xsd:string ; rdfs:label "peak list scans"^^xsd:string ; rdfs:subClassOf obo:MS_1001405, obo:MS_1003058, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000798 obo:IAO_0000115 "A list of raw scans and or scan ranges used to generate a peak list. If possible the list of scans should be converted to native spectrum identifiers instead of using this term."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000798"^^xsd:string ; a owl:Class ; rdfs:comment "This is the preferred storage place for the spectrum RAWSCANS attribute from an MGF peak list."^^xsd:string ; rdfs:label "peak list raw scans"^^xsd:string ; rdfs:subClassOf obo:MS_1001405, obo:MS_1003058, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000799 obo:IAO_0000115 "A software tool that has not yet been released. The value should describe the software. Please do not use this term for publicly available software - contact the PSI-MS working group in order to have another CV term added."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000799"^^xsd:string ; a owl:Class ; rdfs:label "custom unreleased software tool"^^xsd:string ; rdfs:subClassOf obo:MS_1000531, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000800 obo:IAO_0000115 "The observed mass divided by the difference between two masses that can be separated: m/dm. The procedure by which dm was obtained and the mass at which the measurement was made should be reported."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000800"^^xsd:string ; a owl:Class ; rdfs:label "mass resolving power"^^xsd:string ; rdfs:subClassOf obo:MS_1000503, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000801 obo:IAO_0000115 "Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The area defined by all raw data points that belong to the peak is reported."^^xsd:string ; oboInOwl:hasExactSynonym "sum peak picking"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000801"^^xsd:string ; a owl:Class ; rdfs:label "area peak picking"^^xsd:string ; rdfs:subClassOf obo:MS_1000035 . obo:MS_1000802 obo:IAO_0000115 "Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The maximum intensity of all raw data points that belong to the peak is reported."^^xsd:string ; oboInOwl:hasExactSynonym "max peak picking"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000802"^^xsd:string ; a owl:Class ; rdfs:label "height peak picking"^^xsd:string ; rdfs:subClassOf obo:MS_1000035 . obo:MS_1000803 obo:IAO_0000115 "Offset between two analyzers in a constant neutral loss or neutral gain scan. The value corresponds to the neutral loss or neutral gain value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000803"^^xsd:string ; a owl:Class ; rdfs:label "analyzer scan offset"^^xsd:string ; rdfs:subClassOf obo:MS_1000503, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000804 obo:IAO_0000115 "A plot of the relative intensity of electromagnetic radiation as a function of the wavelength."^^xsd:string ; oboInOwl:hasExactSynonym "EMR spectrum"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000804"^^xsd:string ; a owl:Class ; rdfs:label "electromagnetic radiation spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1000524, obo:MS_1000559 . obo:MS_1000805 obo:IAO_0000115 "A plot of the relative intensity of electromagnetic radiation emitted by atoms or molecules when excited."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000805"^^xsd:string ; a owl:Class ; rdfs:label "emission spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1000524, obo:MS_1000559 . obo:MS_1000806 obo:IAO_0000115 "A plot of the relative intensity of electromagnetic radiation absorbed by atoms or molecules when excited."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000806"^^xsd:string ; a owl:Class ; rdfs:label "absorption spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1000524, obo:MS_1000559 . obo:MS_1000807 obo:IAO_0000115 "Unit describing the scan rate of a spectrum in Thomson per second."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000807"^^xsd:string ; a owl:Class ; rdfs:label "Th/s"^^xsd:string ; rdfs:subClassOf obo:UO_0000000 . obo:MS_1000808 obo:IAO_0000115 "Chromatogram properties that are associated with a value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000808"^^xsd:string ; a owl:Class ; rdfs:label "chromatogram attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1000547, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000625 ] . obo:MS_1000809 obo:IAO_0000115 "A free-form text title describing a chromatogram."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000809"^^xsd:string ; a owl:Class ; rdfs:comment "This is the preferred storage place for the spectrum title."^^xsd:string ; rdfs:label "chromatogram title"^^xsd:string ; rdfs:subClassOf obo:MS_1000808, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000810 obo:IAO_0000115 "Representation of the current of ions versus time."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000810"^^xsd:string ; a owl:Class ; rdfs:label "ion current chromatogram"^^xsd:string ; rdfs:subClassOf obo:MS_1000524, obo:MS_1000626 . obo:MS_1000811 obo:IAO_0000115 "Representation of electromagnetic properties versus time."^^xsd:string ; oboInOwl:hasExactSynonym "EMR radiation chromatogram"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000811"^^xsd:string ; a owl:Class ; rdfs:label "electromagnetic radiation chromatogram"^^xsd:string ; rdfs:subClassOf obo:MS_1000524, obo:MS_1000626 . obo:MS_1000812 obo:IAO_0000115 "Representation of light absorbed by the sample versus time."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000812"^^xsd:string ; a owl:Class ; rdfs:label "absorption chromatogram"^^xsd:string ; rdfs:subClassOf obo:MS_1000811 . obo:MS_1000813 obo:IAO_0000115 "Representation of light emitted by the sample versus time."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000813"^^xsd:string ; a owl:Class ; rdfs:label "emission chromatogram"^^xsd:string ; rdfs:subClassOf obo:MS_1000811 . obo:MS_1000814 obo:IAO_0000115 "The number of counted events observed per second in one or a group of elements of a detector."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000814"^^xsd:string ; a owl:Class ; rdfs:label "counts per second"^^xsd:string ; rdfs:subClassOf obo:MS_1000043 . obo:MS_1000815 obo:IAO_0000115 "Bruker BAF raw file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000815"^^xsd:string ; a owl:Class ; rdfs:label "Bruker BAF format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1000816 obo:IAO_0000115 "Bruker HyStar U2 file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000816"^^xsd:string ; a owl:Class ; rdfs:label "Bruker U2 format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1000817 obo:IAO_0000115 "Bruker software for hyphenated experiments."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000817"^^xsd:string ; a owl:Class ; rdfs:label "HyStar"^^xsd:string ; rdfs:subClassOf obo:MS_1000692 . obo:MS_1000818 obo:IAO_0000115 "Acquity UPLC Photodiode Array Detector."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000818"^^xsd:string ; a owl:Class ; rdfs:label "Acquity UPLC PDA"^^xsd:string ; rdfs:subClassOf obo:MS_1000126, obo:MS_1000621 . obo:MS_1000819 obo:IAO_0000115 "Acquity UPLC Fluorescence Detector."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000819"^^xsd:string ; a owl:Class ; rdfs:label "Acquity UPLC FLR"^^xsd:string ; rdfs:subClassOf obo:MS_1000126, obo:MS_1002308 . obo:MS_1000820 obo:IAO_0000115 "A data array of flow rate measurements."^^xsd:string ; oboInOwl:hasDbXref "binary-data-type:MS:1000521"^^xsd:string, "binary-data-type:MS:1000523"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000820"^^xsd:string ; a owl:Class ; rdfs:label "flow rate array"^^xsd:string ; rdfs:subClassOf obo:MS_1000513, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000271 ] . obo:MS_1000821 obo:IAO_0000115 "A data array of pressure measurements."^^xsd:string ; oboInOwl:hasDbXref "binary-data-type:MS:1000521"^^xsd:string, "binary-data-type:MS:1000523"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000821"^^xsd:string ; a owl:Class ; rdfs:label "pressure array"^^xsd:string ; rdfs:subClassOf obo:MS_1000513, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000110 ] . obo:MS_1000822 obo:IAO_0000115 "A data array of temperature measurements."^^xsd:string ; oboInOwl:hasDbXref "binary-data-type:MS:1000521"^^xsd:string, "binary-data-type:MS:1000523"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000822"^^xsd:string ; a owl:Class ; rdfs:label "temperature array"^^xsd:string ; rdfs:subClassOf obo:MS_1000513, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000012 ] . obo:MS_1000823 obo:IAO_0000115 "Native format defined by declaration=xsd:nonNegativeInteger collection=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000823"^^xsd:string ; a owl:Class ; rdfs:label "Bruker U2 nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767 . obo:MS_1000824 obo:IAO_0000115 "No nativeID format indicates that the file tagged with this term does not contain spectra that can have a nativeID format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000824"^^xsd:string ; a owl:Class ; rdfs:label "no nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767 . obo:MS_1000825 obo:IAO_0000115 "Bruker FID file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000825"^^xsd:string ; a owl:Class ; rdfs:label "Bruker FID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1000826 obo:IAO_0000115 "The time of elution from all used chromatographic columns (one or more) in the chromatographic separation step, relative to the start of the chromatography."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000826"^^xsd:string ; a owl:Class ; rdfs:label "elution time"^^xsd:string ; rdfs:subClassOf obo:MS_1000503, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000031 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000827 obo:IAO_0000115 "The primary or reference m/z about which the isolation window is defined."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000827"^^xsd:string ; a owl:Class ; rdfs:label "isolation window target m/z"^^xsd:string ; rdfs:subClassOf obo:MS_1000792, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000828 obo:IAO_0000115 "The extent of the isolation window in m/z below the isolation window target m/z. The lower and upper offsets may be asymmetric about the target m/z."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000828"^^xsd:string ; a owl:Class ; rdfs:label "isolation window lower offset"^^xsd:string ; rdfs:subClassOf obo:MS_1000792, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000829 obo:IAO_0000115 "The extent of the isolation window in m/z above the isolation window target m/z. The lower and upper offsets may be asymmetric about the target m/z."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000829"^^xsd:string ; a owl:Class ; rdfs:label "isolation window upper offset"^^xsd:string ; rdfs:subClassOf obo:MS_1000792, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000831 obo:IAO_0000115 "Properties of the preparation steps which took place before the measurement was performed."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000831"^^xsd:string ; a owl:Class ; rdfs:label "sample preparation"^^xsd:string ; rdfs:subClassOf obo:MS_1000547, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000548 ] . obo:MS_1000832 obo:IAO_0000115 "Attributes to describe the technique how the sample is prepared with the matrix solution."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000832"^^xsd:string ; a owl:Class ; rdfs:label "MALDI matrix application"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000831 ] . obo:MS_1000833 obo:IAO_0000115 "Describes the technique how the matrix is put on the sample target."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000833"^^xsd:string ; a owl:Class ; rdfs:label "matrix application type"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000832 ] . obo:MS_1000834 obo:IAO_0000115 "Describes the chemical solution used as matrix."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000834"^^xsd:string ; a owl:Class ; rdfs:label "matrix solution"^^xsd:string ; rdfs:subClassOf obo:MS_1000832, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000835 obo:IAO_0000115 "Concentration of the chemical solution used as matrix."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000835"^^xsd:string ; a owl:Class ; rdfs:label "matrix solution concentration"^^xsd:string ; rdfs:subClassOf obo:MS_1000832, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000175 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000836 obo:IAO_0000115 "Dried droplet in MALDI matrix preparation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000836"^^xsd:string ; a owl:Class ; rdfs:label "dried droplet MALDI matrix preparation"^^xsd:string ; rdfs:subClassOf obo:MS_1000833 . obo:MS_1000837 obo:IAO_0000115 "Printed MALDI matrix preparation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000837"^^xsd:string ; a owl:Class ; rdfs:label "printed MALDI matrix preparation"^^xsd:string ; rdfs:subClassOf obo:MS_1000833 . obo:MS_1000838 obo:IAO_0000115 "Sprayed MALDI matrix preparation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000838"^^xsd:string ; a owl:Class ; rdfs:label "sprayed MALDI matrix preparation"^^xsd:string ; rdfs:subClassOf obo:MS_1000833 . obo:MS_1000839 obo:IAO_0000115 "Precoated MALDI sample plate."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000839"^^xsd:string ; a owl:Class ; rdfs:label "precoated MALDI sample plate"^^xsd:string ; rdfs:subClassOf obo:MS_1000833, obo:MS_1001938 . obo:MS_1000840 obo:IAO_0000115 "Device that emits light (electromagnetic radiation) through a process called stimulated emission. The term is an acronym for Light Amplification by Stimulated Emission of Radiation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000840"^^xsd:string ; a owl:Class ; rdfs:label "laser"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000482 ] . obo:MS_1000841 obo:IAO_0000115 "Laser properties that are associated with a value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000841"^^xsd:string ; a owl:Class ; rdfs:label "laser attribute"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000840 ] . obo:MS_1000842 obo:IAO_0000115 "Type of laser used for desorption purpose."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000842"^^xsd:string ; a owl:Class ; rdfs:label "laser type"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000840 ] . obo:MS_1000843 obo:IAO_0000115 "OBSOLETE The distance between two peaks of the emitted laser beam."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000843"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was redundant with the Pato Ontology term wavelength (UO:0001242)."^^xsd:string ; rdfs:label "wavelength"^^xsd:string ; rdfs:subClassOf obo:MS_1000841, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000018 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] ; owl:deprecated true . obo:MS_1000844 obo:IAO_0000115 "Describes the diameter of the laser beam in x direction."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000844"^^xsd:string ; a owl:Class ; rdfs:label "focus diameter x"^^xsd:string ; rdfs:subClassOf obo:MS_1000841, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000017 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000845 obo:IAO_0000115 "Describes the diameter of the laser beam in y direction."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000845"^^xsd:string ; a owl:Class ; rdfs:label "focus diameter y"^^xsd:string ; rdfs:subClassOf obo:MS_1000841, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000017 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000846 obo:IAO_0000115 "Describes output energy of the laser system. May be attenuated by filters or other means."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000846"^^xsd:string ; a owl:Class ; rdfs:label "pulse energy"^^xsd:string ; rdfs:subClassOf obo:MS_1000841, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000112 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000847 obo:IAO_0000115 "Describes how long the laser beam was emitted from the laser device."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000847"^^xsd:string ; a owl:Class ; rdfs:label "pulse duration"^^xsd:string ; rdfs:subClassOf obo:MS_1000841, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000150 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000848 obo:IAO_0000115 "Describes the reduction of the intensity of the laser beam energy."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000848"^^xsd:string ; a owl:Class ; rdfs:label "attenuation"^^xsd:string ; rdfs:subClassOf obo:MS_1000841, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000187 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000849 obo:IAO_0000115 "Describes the angle between the laser beam and the sample target."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000849"^^xsd:string ; a owl:Class ; rdfs:label "impact angle"^^xsd:string ; rdfs:subClassOf obo:MS_1000841, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000185 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000850 obo:IAO_0000115 "Laser which is powered by a gaseous medium."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000850"^^xsd:string ; a owl:Class ; rdfs:label "gas laser"^^xsd:string ; rdfs:subClassOf obo:MS_1000842 . obo:MS_1000851 obo:IAO_0000115 "Solid state laser materials are commonly made by doping a crystalline solid host with ions that provide the required energy states."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000851"^^xsd:string ; a owl:Class ; rdfs:label "solid-state laser"^^xsd:string ; rdfs:subClassOf obo:MS_1000842 . obo:MS_1000852 obo:IAO_0000115 "Dye lasers use an organic dye as the gain medium."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000852"^^xsd:string ; a owl:Class ; rdfs:label "dye-laser"^^xsd:string ; rdfs:subClassOf obo:MS_1000842 . obo:MS_1000853 obo:IAO_0000115 "Free electron laser uses a relativistic electron beam as the lasing medium which move freely through a magnetic structure, hence the term."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000853"^^xsd:string ; a owl:Class ; rdfs:label "free electron laser"^^xsd:string ; rdfs:subClassOf obo:MS_1000842 . obo:MS_1000854 obo:IAO_0000115 "Thermo Scientific LTQ XL MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000854"^^xsd:string ; a owl:Class ; rdfs:label "LTQ XL"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000855 obo:IAO_0000115 "Thermo Scientific LTQ Velos MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000855"^^xsd:string ; a owl:Class ; rdfs:label "LTQ Velos"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000856 obo:IAO_0000115 "Thermo Scientific LTQ Velos MS with ETD."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000856"^^xsd:string ; a owl:Class ; rdfs:label "LTQ Velos ETD"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1000857 obo:IAO_0000115 "Properties of the described run."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000857"^^xsd:string ; a owl:Class ; rdfs:label "run attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1000547 . obo:MS_1000858 obo:IAO_0000115 "Identier string that describes the sample fraction. This identifier should contain the fraction number(s) or similar information."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000858"^^xsd:string ; a owl:Class ; rdfs:label "fraction identifier"^^xsd:string ; rdfs:subClassOf obo:MS_1000857, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000859 obo:IAO_0000115 "Group of two or more atoms held together by chemical bonds."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000859"^^xsd:string ; a owl:Class ; rdfs:label "molecule"^^xsd:string ; rdfs:subClassOf obo:MS_1000881 . obo:MS_1000860 obo:IAO_0000115 "A molecule of low molecular weight that is composed of two or more amino acid residues."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000860"^^xsd:string ; a owl:Class ; rdfs:label "peptide"^^xsd:string ; rdfs:subClassOf obo:MS_1000859 . obo:MS_1000861 obo:IAO_0000115 "A physical characteristic of a molecular entity."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000861"^^xsd:string ; a owl:Class ; rdfs:label "molecular entity property"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000881 ] . obo:MS_1000862 obo:IAO_0000115 "The pH of a solution at which a charged molecule does not migrate in an electric field."^^xsd:string ; oboInOwl:hasExactSynonym "pI"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000862"^^xsd:string ; a owl:Class ; rdfs:label "isoelectric point"^^xsd:string ; rdfs:subClassOf obo:MS_1000861, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000863 obo:IAO_0000115 "The pH of a solution at which a charged molecule would not migrate in an electric field, as predicted by a software algorithm."^^xsd:string ; oboInOwl:hasExactSynonym "predicted pI"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000863"^^xsd:string ; a owl:Class ; rdfs:label "predicted isoelectric point"^^xsd:string ; rdfs:subClassOf obo:MS_1000862, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000864 obo:IAO_0000115 "A combination of symbols used to express the chemical composition of a molecule."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000864"^^xsd:string ; a owl:Class ; rdfs:label "chemical formula"^^xsd:string ; rdfs:subClassOf obo:MS_1003033 . obo:MS_1000865 obo:IAO_0000115 "A chemical formula which expresses the proportions of the elements present in a substance."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000865"^^xsd:string ; a owl:Class ; rdfs:label "empirical formula"^^xsd:string ; rdfs:subClassOf obo:MS_1000864, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000866 obo:IAO_0000115 "A chemical compound formula expressing the number of atoms of each element present in a compound, without indicating how they are linked."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000866"^^xsd:string ; a owl:Class ; rdfs:label "molecular formula"^^xsd:string ; rdfs:subClassOf obo:MS_1000864, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000867 obo:IAO_0000115 "A chemical formula showing the number of atoms of each element in a molecule, their spatial arrangement, and their linkage to each other."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000867"^^xsd:string ; a owl:Class ; rdfs:label "structural formula"^^xsd:string ; rdfs:subClassOf obo:MS_1000864, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000868 obo:IAO_0000115 "The simplified molecular input line entry specification or SMILES is a specification for unambiguously describing the structure of a chemical compound using a short ASCII string."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000868"^^xsd:string ; a owl:Class ; rdfs:label "SMILES formula"^^xsd:string ; rdfs:subClassOf obo:MS_1000864, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000869 obo:IAO_0000115 "The gas pressure of the collision gas used for collisional excitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000869"^^xsd:string ; a owl:Class ; rdfs:label "collision gas pressure"^^xsd:string ; rdfs:subClassOf obo:MS_1000510, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000110 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000870 obo:IAO_0000115 "OBSOLETE SCIEX or Applied Biosystems|MDS SCIEX QTRAP 4000."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000870"^^xsd:string ; a owl:Class ; rdfs:comment "This term was obsoleted because was redundant to MS:1000139."^^xsd:string ; rdfs:label "4000 QTRAP"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 ; owl:deprecated true . obo:MS_1000871 obo:IAO_0000115 "Software used to predict, select, or optimize transitions or analyze the results of selected reaction monitoring runs."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000871"^^xsd:string ; a owl:Class ; rdfs:label "SRM software"^^xsd:string ; rdfs:subClassOf obo:MS_1000531 . obo:MS_1000872 obo:IAO_0000115 "Software used to predict transitions for selected reaction monitoring experiments based on observed spectrum libraries developed and distributed by the Institute for Systems Biology."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000872"^^xsd:string ; a owl:Class ; rdfs:label "MaRiMba"^^xsd:string ; rdfs:subClassOf obo:MS_1000871 . obo:MS_1000873 obo:IAO_0000115 "Software used to predict or calculate numerical attributes of peptides."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000873"^^xsd:string ; a owl:Class ; rdfs:label "peptide attribute calculation software"^^xsd:string ; rdfs:subClassOf obo:MS_1000531 . obo:MS_1000874 obo:IAO_0000115 "Sequence Specific Retention Calculator estimates the retention time of peptides based on their sequence."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000874"^^xsd:string ; a owl:Class ; rdfs:label "SSRCalc"^^xsd:string ; rdfs:subClassOf obo:MS_1000873 . obo:MS_1000875 obo:IAO_0000115 "Potential difference between the orifice and the skimmer in volts."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000875"^^xsd:string ; a owl:Class ; rdfs:label "declustering potential"^^xsd:string ; rdfs:subClassOf obo:MS_1000482, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000218 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000876 obo:IAO_0000115 "Potential difference between the sampling cone/orifice in volts."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000876"^^xsd:string ; a owl:Class ; rdfs:label "cone voltage"^^xsd:string ; rdfs:subClassOf obo:MS_1000482, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000218 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000877 obo:IAO_0000115 "Potential difference setting of the tube lens in volts."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000877"^^xsd:string ; a owl:Class ; rdfs:label "tube lens voltage"^^xsd:string ; rdfs:subClassOf obo:MS_1000482, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000218 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000878 obo:IAO_0000115 "An identifier/accession number to an external reference database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000878"^^xsd:string ; a owl:Class ; rdfs:label "external reference identifier"^^xsd:string ; rdfs:subClassOf obo:MS_1002840 . obo:MS_1000879 obo:IAO_0000115 "A unique identifier for a publication in the PubMed database (MIR:00000015)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000879"^^xsd:string ; a owl:Class ; rdfs:label "PubMed identifier"^^xsd:string ; rdfs:subClassOf obo:MS_1000878, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1000880 obo:IAO_0000115 "The duration of intervals between scanning, during which the instrument configuration is switched."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000880"^^xsd:string ; a owl:Class ; rdfs:label "interchannel delay"^^xsd:string ; rdfs:subClassOf obo:MS_1000503, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000881 obo:IAO_0000115 "Constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer, etc., identifiable as a separately distinguishable entity."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000881"^^xsd:string ; a owl:Class ; rdfs:label "molecular entity"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_0000000 ] . obo:MS_1000882 obo:IAO_0000115 "A compound composed of one or more chains of amino acids in a specific order determined by the base sequence of nucleotides in the DNA of a gene."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000882"^^xsd:string ; a owl:Class ; rdfs:label "protein"^^xsd:string ; rdfs:subClassOf obo:MS_1000859 . obo:MS_1000883 obo:IAO_0000115 "A short name or symbol of a protein (e.g., HSF 1 or HSF1_HUMAN)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000883"^^xsd:string ; a owl:Class ; rdfs:label "protein short name"^^xsd:string ; rdfs:subClassOf obo:MS_1000884, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000884 obo:IAO_0000115 "An nonphysical characterstic attributed to a specific protein."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000884"^^xsd:string ; a owl:Class ; rdfs:label "protein attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1001806, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000882 ] . obo:MS_1000885 obo:IAO_0000115 "Identifier for a specific protein in a database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000885"^^xsd:string ; a owl:Class ; rdfs:label "protein accession"^^xsd:string ; rdfs:subClassOf obo:MS_1000884, obo:MS_1003046, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000886 obo:IAO_0000115 "A long name describing the function of the protein."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000886"^^xsd:string ; a owl:Class ; rdfs:label "protein name"^^xsd:string ; rdfs:subClassOf obo:MS_1000884, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000887 obo:IAO_0000115 "Nonphysical characteristic attributed to a peptide."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000887"^^xsd:string ; a owl:Class ; rdfs:label "peptide attribute"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000860 ] . obo:MS_1000888 obo:IAO_0000115 "Sequence of letter symbols denoting the order of amino acids that compose the peptide, with any amino acid mass modifications that might be present having been stripped away."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000888"^^xsd:string ; a owl:Class ; rdfs:label "stripped peptide sequence"^^xsd:string ; rdfs:subClassOf obo:MS_1003050, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000889 obo:IAO_0000115 "Sequence of letter symbols denoting the order of amino acid residues that compose the peptidoform including the encoding of any residue modifications that are present."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000889"^^xsd:string ; a owl:Class ; rdfs:comment "Make it more general as there are actually many other ways to display a modified peptide sequence."^^xsd:string ; rdfs:label "peptidoform sequence"^^xsd:string ; rdfs:subClassOf obo:MS_1003050, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000890 obo:IAO_0000115 "A state description of how a peptide might be isotopically or isobarically labelled."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000890"^^xsd:string ; a owl:Class ; rdfs:label "peptidoform labeling state"^^xsd:string ; rdfs:subClassOf obo:MS_1003050 . obo:MS_1000891 obo:IAO_0000115 "A peptide that has been created or labelled with some heavier-than-usual isotopes."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000891"^^xsd:string ; a owl:Class ; rdfs:label "heavy labeled peptidoform"^^xsd:string ; rdfs:subClassOf obo:MS_1000890 . obo:MS_1000892 obo:IAO_0000115 "A peptide that has not been labelled with heavier-than-usual isotopes. This is often referred to as \"light\" to distinguish from \"heavy\"."^^xsd:string ; oboInOwl:hasExactSynonym "light labeled peptide"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000892"^^xsd:string ; a owl:Class ; rdfs:label "unlabeled peptidoform"^^xsd:string ; rdfs:subClassOf obo:MS_1000890 . obo:MS_1000893 obo:IAO_0000115 "An arbitrary string label used to mark a set of peptides that belong together in a set, whereby the members are differentiated by different isotopic labels. For example, the heavy and light forms of the same peptide will both be assigned the same peptide group label."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000893"^^xsd:string ; a owl:Class ; rdfs:label "peptidoform group label"^^xsd:string ; rdfs:subClassOf obo:MS_1003050, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000894 obo:IAO_0000115 "A time interval from the start of chromatography when an analyte exits a chromatographic column."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000894"^^xsd:string ; a owl:Class ; rdfs:label "retention time"^^xsd:string ; rdfs:subClassOf obo:MS_1003050, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000031 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000895 obo:IAO_0000115 "A time interval from the start of chromatography when an analyte exits an unspecified local chromatographic column and instrumental setup."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000895"^^xsd:string ; a owl:Class ; rdfs:label "local retention time"^^xsd:string ; rdfs:subClassOf obo:MS_1000894, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000031 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000896 obo:IAO_0000115 "A time interval from the start of chromatography when an analyte exits a standardized reference chromatographic column and instrumental setup."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000896"^^xsd:string ; a owl:Class ; rdfs:label "normalized retention time"^^xsd:string ; rdfs:subClassOf obo:MS_1000894, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000031 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000897 obo:IAO_0000115 "A time interval from the start of chromatography when an analyte exits a chromatographic column as predicted by a referenced software application."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000897"^^xsd:string ; a owl:Class ; rdfs:label "predicted retention time"^^xsd:string ; rdfs:subClassOf obo:MS_1000894, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000031 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000898 obo:IAO_0000115 "Something, such as a practice or a product, that is widely recognized or employed, especially because of its excellence."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000898"^^xsd:string ; a owl:Class ; rdfs:label "standard"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_0000000 ] . obo:MS_1000899 obo:IAO_0000115 "A practice or product that has become a standard not because it has been approved by a standards organization but because it is widely used and recognized by the industry as being standard."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000899"^^xsd:string ; a owl:Class ; rdfs:label "de facto standard"^^xsd:string ; rdfs:subClassOf obo:MS_1000898 . obo:MS_1000900 obo:IAO_0000115 "A specification of a minimum amount of information needed to reproduce or fully interpret a scientific result."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000900"^^xsd:string ; a owl:Class ; rdfs:label "minimum information standard"^^xsd:string ; rdfs:subClassOf obo:MS_1000898 . obo:MS_1000901 obo:IAO_0000115 "A standard providing the retention times at which a set of reference compounds exit the reference chromatographic column."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000901"^^xsd:string ; a owl:Class ; rdfs:label "retention time normalization standard"^^xsd:string ; rdfs:subClassOf obo:MS_1000898 . obo:MS_1000902 obo:IAO_0000115 "The de facto standard providing the retention times at which a set of halogenated reference peptides exit the reference chromatographic column."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000902"^^xsd:string ; a owl:Class ; rdfs:label "H-PINS retention time normalization standard"^^xsd:string ; rdfs:subClassOf obo:MS_1000901 . obo:MS_1000903 obo:IAO_0000115 "The ordinal of the fragment within a specified ion series. (e.g. 8 for a y8 ion)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000903"^^xsd:string ; a owl:Class ; rdfs:label "product ion series ordinal"^^xsd:string ; rdfs:subClassOf obo:MS_1001221, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ] . obo:MS_1000904 obo:IAO_0000115 "The difference in m/z of the predicted m/z based on the assigned product ion minus the actual observed peak m/z."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000904"^^xsd:string ; a owl:Class ; rdfs:label "product ion m/z delta"^^xsd:string ; rdfs:subClassOf obo:MS_1001221, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ] . obo:MS_1000905 obo:IAO_0000115 "The magnitude of a peak expressed in terms of the percentage of the magnitude of the base peak intensity multiplied by 100. The base peak is therefore 10000. This unit is common in normalized spectrum libraries."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000905"^^xsd:string ; a owl:Class ; rdfs:label "percent of base peak times 100"^^xsd:string ; rdfs:subClassOf obo:MS_1000043, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000906 obo:IAO_0000115 "Ordinal specifying the rank in intensity of a peak in a spectrum. Base peak is 1. The next most intense peak is 2, etc."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000906"^^xsd:string ; a owl:Class ; rdfs:label "peak intensity rank"^^xsd:string ; rdfs:subClassOf obo:MS_1000455, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000231 ] . obo:MS_1000907 obo:IAO_0000115 "Ordinal specifying the rank of a peak in a spectrum in terms of suitability for targeting. The most suitable peak is 1. The next most suitability peak is 2, etc. Suitability is algorithm and context dependant."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000907"^^xsd:string ; a owl:Class ; rdfs:label "peak targeting suitability rank"^^xsd:string ; rdfs:subClassOf obo:MS_1000455, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000231 ] . obo:MS_1000908 obo:IAO_0000115 "A set of two m/z values corresponding to the precursor m/z and a fragment m/z that in combination can be used to identify or quantify a specific ion, although not necessarily uniquely."^^xsd:string ; oboInOwl:hasExactSynonym "reaction"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000908"^^xsd:string ; a owl:Class ; rdfs:label "transition"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001458 ] . obo:MS_1000909 obo:IAO_0000115 "The strategy used to validate that a transition is effective."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000909"^^xsd:string ; a owl:Class ; rdfs:label "transition validation method"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000908 ] . obo:MS_1000910 obo:IAO_0000115 "The transition has been optimized by direct injection of the peptide into an instrument specified in a separate term, and the optimum voltages and fragmentation energies have been determined."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000910"^^xsd:string ; a owl:Class ; rdfs:label "transition optimized on specified instrument"^^xsd:string ; rdfs:subClassOf obo:MS_1000909 . obo:MS_1000911 obo:IAO_0000115 "The transition has been validated by obtaining an MS2 spectrum and demonstrating that the peak is detectable on the instrument specified with a separate term."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000911"^^xsd:string ; a owl:Class ; rdfs:label "transition validated with an MS/MS spectrum on specified instrument"^^xsd:string ; rdfs:subClassOf obo:MS_1000909 . obo:MS_1000912 obo:IAO_0000115 "The transition has been purported by obtaining an MS2 spectrum and demonstrating that the peak is detectable on the instrument specified with a separate term. However, the detecting instrument is of a different type (e.g. ion trap) than the instrument that the transition will eventually be used on (e.g. triple quad)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000912"^^xsd:string ; a owl:Class ; rdfs:label "transition purported from an MS/MS spectrum on a different, specified instrument"^^xsd:string ; rdfs:subClassOf obo:MS_1000909 . obo:MS_1000913 obo:IAO_0000115 "The transition has been predicted by informatics software without any direct spectral evidence."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000913"^^xsd:string ; a owl:Class ; rdfs:label "transition predicted by informatic analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1000909 . obo:MS_1000914 obo:IAO_0000115 "A file format that has two or more columns of tabular data where each column is separated by a TAB character."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000914"^^xsd:string ; a owl:Class ; rdfs:label "tab delimited text format"^^xsd:string ; rdfs:subClassOf obo:MS_1001040, obo:MS_1001459 . obo:MS_1000915 obo:IAO_0000115 "An attribute of a window in time about which a peptide might elute from the column."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000915"^^xsd:string ; a owl:Class ; rdfs:label "retention time window attribute"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000894 ] . obo:MS_1000916 obo:IAO_0000115 "The extent of the retention time window in time units below the target retention time. The lower and upper offsets may be asymmetric about the target time."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000916"^^xsd:string ; a owl:Class ; rdfs:label "retention time window lower offset"^^xsd:string ; rdfs:subClassOf obo:MS_1000915, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000031 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000917 obo:IAO_0000115 "The extent of the retention time window in time units above the target retention time. The lower and upper offsets may be asymmetric about the target time."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000917"^^xsd:string ; a owl:Class ; rdfs:label "retention time window upper offset"^^xsd:string ; rdfs:subClassOf obo:MS_1000915, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000031 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000918 obo:IAO_0000115 "A list of peptides or compounds and their expected m/z coordinates that can be used to cause a mass spectrometry to obtain spectra of those molecules specifically."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000918"^^xsd:string ; a owl:Class ; rdfs:label "target list"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001458 ] . obo:MS_1000919 obo:IAO_0000115 "A priority setting specifying whether included or excluded targets have priority over the other."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000919"^^xsd:string ; a owl:Class ; rdfs:label "target inclusion exclusion priority"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000918 ] . obo:MS_1000920 obo:IAO_0000115 "A priority setting specifying that included targets have priority over the excluded targets if there is a conflict."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000920"^^xsd:string ; a owl:Class ; rdfs:label "includes supersede excludes"^^xsd:string ; rdfs:subClassOf obo:MS_1000919 . obo:MS_1000921 obo:IAO_0000115 "A priority setting specifying that excluded targets have priority over the included targets if there is a conflict."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000921"^^xsd:string ; a owl:Class ; rdfs:label "excludes supersede includes"^^xsd:string ; rdfs:subClassOf obo:MS_1000919 . obo:MS_1000922 obo:IAO_0000115 "Software used to predict, select, and optimize transitions as well as analyze the results of selected reaction monitoring runs developed and distributed by the MacCoss lab at the University of Washington."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000922"^^xsd:string ; a owl:Class ; rdfs:label "Skyline"^^xsd:string ; rdfs:subClassOf obo:MS_1000871, obo:MS_1001139 . obo:MS_1000923 obo:IAO_0000115 "Software used to predict, select, and optimize transitions for selected reaction monitoring experiments developed and distributed by the Institute for Systems Biology."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000923"^^xsd:string ; a owl:Class ; rdfs:label "TIQAM"^^xsd:string ; rdfs:subClassOf obo:MS_1000871 . obo:MS_1000924 obo:IAO_0000115 "OBSOLETE Software used to predict transitions for selected reaction monitoring experiments based on observed spectrum libraries developed and distributed by the Institute for Systems Biology."^^xsd:string ; obo:IAO_0100001 "MS:1000872"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000924"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was redundant with an existing term (MS:1000872)."^^xsd:string ; rdfs:label "MaRiMba"^^xsd:string ; owl:deprecated true . obo:MS_1000925 obo:IAO_0000115 "Software suite used to predict, select, and optimize transitions as well as analyze the results of selected reaction monitoring runs developed and distributed by the Institute for Systems Biology."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000925"^^xsd:string ; a owl:Class ; rdfs:label "ATAQS"^^xsd:string ; rdfs:subClassOf obo:MS_1000871 . obo:MS_1000926 obo:IAO_0000115 "The integer rank given an interpretation of an observed product ion. For example, if y8 is selected as the most likely interpretation of a peak, then it is assigned a rank of 1."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000926"^^xsd:string ; a owl:Class ; rdfs:label "product interpretation rank"^^xsd:string ; rdfs:subClassOf obo:MS_1001221, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ] . obo:MS_1000927 obo:IAO_0000115 "The length of time spent filling an ion trapping device."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000927"^^xsd:string ; a owl:Class ; rdfs:label "ion injection time"^^xsd:string ; rdfs:subClassOf obo:MS_1000503, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000028 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1000928 obo:IAO_0000115 "A spectrum derived from a special calibration source, rather than from the primary injected sample. A calibration spectrum is typically derived from a substance that can be used to correct systematic shift in m/z for spectra of the primary inject sample."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000928"^^xsd:string ; a owl:Class ; rdfs:label "calibration spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1000559 . obo:MS_1000929 obo:IAO_0000115 "Native format defined by source=xsd:string start=xsd:nonNegativeInteger end=xsd:nonNegativeInteger."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000929"^^xsd:string ; a owl:Class ; rdfs:label "Shimadzu Biotech nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767 . obo:MS_1000930 obo:IAO_0000115 "Shimadzu Biotech format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000930"^^xsd:string ; a owl:Class ; rdfs:label "Shimadzu Biotech database entity"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1000931 obo:IAO_0000115 "Applied Biosystems|MDS SCIEX QTRAP 5500."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000931"^^xsd:string ; a owl:Class ; rdfs:label "QTRAP 5500"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1000932 obo:IAO_0000115 "SCIEX TripleTOF 5600, a quadrupole - quadrupole - time-of-flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000932"^^xsd:string ; a owl:Class ; rdfs:label "TripleTOF 5600"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1000933 obo:IAO_0000115 "Encoding of modifications of the protein sequence from the specified accession, written in PEFF notation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000933"^^xsd:string ; a owl:Class ; rdfs:label "protein modifications"^^xsd:string ; rdfs:subClassOf obo:MS_1000884, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000934 obo:IAO_0000115 "Name of the gene from which the protein is translated."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000934"^^xsd:string ; a owl:Class ; rdfs:label "gene name"^^xsd:string ; rdfs:subClassOf obo:MS_1000884, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1000935 obo:IAO_0000115 "The 6470A Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000935"^^xsd:string ; a owl:Class ; rdfs:label "6470A Triple Quadrupole LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1000936 obo:IAO_0000115 "The 6470B Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000936"^^xsd:string ; a owl:Class ; rdfs:label "6470B Triple Quadrupole LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1000937 obo:IAO_0000115 "The 6495C Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1000937"^^xsd:string ; a owl:Class ; rdfs:label "6495C Triple Quadrupole LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1001000 obo:IAO_0000115 "Collection of terms from the PSI Proteome Informatics standards describing the interpretation of spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001000"^^xsd:string ; a owl:Class ; rdfs:label "spectrum interpretation"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_0000000 ] . obo:MS_1001005 oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001005"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:CleavesAt"^^xsd:string ; rdfs:subClassOf obo:MS_1002096, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001006 obo:IAO_0000115 "SEQUEST View Input Parameters."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001006"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:ViewCV"^^xsd:string ; rdfs:subClassOf obo:MS_1002096 . obo:MS_1001007 obo:IAO_0000115 "Number of peptide results to show."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001007"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:OutputLines"^^xsd:string ; rdfs:subClassOf obo:MS_1002096, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_nonNegativeInteger ] . obo:MS_1001009 obo:IAO_0000115 "Number of full protein descriptions to show for top N peptides."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001009"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:DescriptionLines"^^xsd:string ; rdfs:subClassOf obo:MS_1002096, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001010 obo:IAO_0000115 "A de novo sequencing search (without database)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001010"^^xsd:string ; a owl:Class ; rdfs:label "de novo search"^^xsd:string ; rdfs:subClassOf obo:MS_1001080 . obo:MS_1001011 obo:IAO_0000115 "Details about the database searched."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001011"^^xsd:string ; a owl:Class ; rdfs:label "search database details"^^xsd:string ; rdfs:subClassOf obo:MS_1001249 . obo:MS_1001012 obo:IAO_0000115 "The organisation, project or laboratory from where the database is obtained (UniProt, NCBI, EBI, other)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001012"^^xsd:string ; a owl:Class ; rdfs:label "database source"^^xsd:string ; rdfs:subClassOf obo:MS_1001011, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001013 obo:IAO_0000115 "The name of the search database (nr, SwissProt or est_human)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001013"^^xsd:string ; a owl:Class ; rdfs:label "database name"^^xsd:string ; rdfs:subClassOf obo:MS_1001011 . obo:MS_1001014 obo:IAO_0000115 "OBSOLETE: Use attribute in mzIdentML instead. Local file path of the search database from the search engine's point of view."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001014"^^xsd:string ; a owl:Class ; rdfs:label "database local file path"^^xsd:string ; rdfs:subClassOf obo:MS_1001011 ; owl:deprecated true . obo:MS_1001015 obo:IAO_0000115 "URI, from where the search database was originally downloaded."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001015"^^xsd:string ; a owl:Class ; rdfs:label "database original uri"^^xsd:string ; rdfs:subClassOf obo:MS_1001011, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_anyURI ] . obo:MS_1001016 obo:IAO_0000115 "Version of the search database. In mzIdentML use the attribute instead."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001016"^^xsd:string ; a owl:Class ; rdfs:label "database version"^^xsd:string ; rdfs:subClassOf obo:MS_1001011, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001017 obo:IAO_0000115 "Date and time at which a product was publicly released. For mzIdentML, use the database release date XML attribute instead of this term."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001017"^^xsd:string ; a owl:Class ; rdfs:label "release date"^^xsd:string ; rdfs:subClassOf obo:MS_1001011, obo:MS_1003171, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002073 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_dateTime ] . obo:MS_1001018 obo:IAO_0000115 "Database containing amino acid or nucleic acid sequences."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001018"^^xsd:string ; a owl:Class ; rdfs:label "database type"^^xsd:string ; rdfs:subClassOf obo:MS_1001011 . obo:MS_1001019 obo:IAO_0000115 "Was there filtering used on the database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001019"^^xsd:string ; a owl:Class ; rdfs:label "database filtering"^^xsd:string ; rdfs:subClassOf obo:MS_1001011 . obo:MS_1001020 obo:IAO_0000115 "A taxonomy filter was to the database search."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001020"^^xsd:string ; a owl:Class ; rdfs:label "DB filter taxonomy"^^xsd:string ; rdfs:subClassOf obo:MS_1001511 . obo:MS_1001021 obo:IAO_0000115 "Filtering applied specifically by accession number pattern."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001021"^^xsd:string ; a owl:Class ; rdfs:label "DB filter on accession numbers"^^xsd:string ; rdfs:subClassOf obo:MS_1001511 . obo:MS_1001022 obo:IAO_0000115 "Filtering applied specifically by protein molecular weight, specified as either a range or above/below a threshold value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001022"^^xsd:string ; a owl:Class ; rdfs:label "DB MW filter"^^xsd:string ; rdfs:subClassOf obo:MS_1001511 . obo:MS_1001023 obo:IAO_0000115 "Filtering applied specifically by predicted protein isoelectric focussing point (pI), specified as either a range or above/below a threshold value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001023"^^xsd:string ; a owl:Class ; rdfs:label "DB PI filter"^^xsd:string ; rdfs:subClassOf obo:MS_1001511 . obo:MS_1001024 obo:IAO_0000115 "The translated open reading frames from a nucleotide database considered in the search (range: 1-6)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001024"^^xsd:string ; a owl:Class ; rdfs:label "translation frame"^^xsd:string ; rdfs:subClassOf obo:MS_1001011 . obo:MS_1001025 obo:IAO_0000115 "The translation table used to translate the nucleotides to amino acids."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001025"^^xsd:string ; a owl:Class ; rdfs:label "translation table"^^xsd:string ; rdfs:subClassOf obo:MS_1001011, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001026 oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001026"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:NormalizeXCorrValues"^^xsd:string ; rdfs:subClassOf obo:MS_1002096, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001027 obo:IAO_0000115 "Filtering applied specifically by amino acid sequence pattern."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001027"^^xsd:string ; a owl:Class ; rdfs:label "DB filter on sequence pattern"^^xsd:string ; rdfs:subClassOf obo:MS_1001511 . obo:MS_1001028 obo:IAO_0000115 "String in the header of a sequence entry for that entry to be searched."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001028"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:SequenceHeaderFilter"^^xsd:string ; rdfs:subClassOf obo:MS_1002096, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001029 obo:IAO_0000115 "The number of sequences (proteins / nucleotides) from the database search after filtering."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001029"^^xsd:string ; a owl:Class ; rdfs:label "number of sequences searched"^^xsd:string ; rdfs:subClassOf obo:MS_1001011, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ] . obo:MS_1001030 obo:IAO_0000115 "Number of peptide seqs compared to each spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001030"^^xsd:string ; a owl:Class ; rdfs:label "number of peptide seqs compared to each spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1001011, obo:MS_1001405, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_nonNegativeInteger ] . obo:MS_1001031 obo:IAO_0000115 "A search using a library of spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001031"^^xsd:string ; a owl:Class ; rdfs:label "spectral library search"^^xsd:string ; rdfs:subClassOf obo:MS_1001080 . obo:MS_1001032 oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001032"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:SequencePartialFilter"^^xsd:string ; rdfs:subClassOf obo:MS_1002096, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001035 obo:IAO_0000115 "OBSOLETE: use attribute in mzIdentML instead. Date and time of the actual search run."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001035"^^xsd:string ; a owl:Class ; rdfs:label "date / time search performed"^^xsd:string ; rdfs:subClassOf obo:MS_1001184 ; owl:deprecated true . obo:MS_1001036 obo:IAO_0000115 "The time taken to complete the search in seconds."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001036"^^xsd:string ; a owl:Class ; rdfs:label "search time taken"^^xsd:string ; rdfs:subClassOf obo:MS_1001184, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ] . obo:MS_1001037 obo:IAO_0000115 "Flag indicating that fragment ions should be shown."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001037"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:ShowFragmentIons"^^xsd:string ; rdfs:subClassOf obo:MS_1002096, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001038 obo:IAO_0000115 "Specify depth as value of the CVParam."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001038"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:Consensus"^^xsd:string ; rdfs:subClassOf obo:MS_1001006, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ] . obo:MS_1001040 obo:IAO_0000115 "Type of the source file, the mzIdentML was created from."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001040"^^xsd:string ; a owl:Class ; rdfs:label "intermediate analysis format"^^xsd:string ; rdfs:subClassOf obo:MS_1001459 . obo:MS_1001041 obo:IAO_0000115 "SEQUEST View / Sort Input Parameters."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001041"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:sortCV"^^xsd:string ; rdfs:subClassOf obo:MS_1001006 . obo:MS_1001042 obo:IAO_0000115 "Specify \"number of dtas shown\" as value of the CVParam."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001042"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:LimitTo"^^xsd:string ; rdfs:subClassOf obo:MS_1002096, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ] . obo:MS_1001044 obo:IAO_0000115 "Details of cleavage agent (enzyme)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001044"^^xsd:string ; a owl:Class ; rdfs:label "cleavage agent details"^^xsd:string ; rdfs:subClassOf obo:MS_1001249 . obo:MS_1001045 obo:IAO_0000115 "The name of the cleavage agent."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001045"^^xsd:string ; a owl:Class ; rdfs:label "cleavage agent name"^^xsd:string ; rdfs:subClassOf obo:MS_1001044 . obo:MS_1001046 obo:IAO_0000115 "Sort order of SEQUEST search results by the delta of the normalized correlation score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001046"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:sort by dCn"^^xsd:string ; rdfs:subClassOf obo:MS_1001041, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001047 obo:IAO_0000115 "Sort order of SEQUEST search results by the difference between a theoretically calculated and the corresponding experimentally measured molecular mass M."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001047"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:sort by dM"^^xsd:string ; rdfs:subClassOf obo:MS_1001041, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001048 obo:IAO_0000115 "Sort order of SEQUEST search results given by the ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001048"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:sort by Ions"^^xsd:string ; rdfs:subClassOf obo:MS_1001041, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001049 obo:IAO_0000115 "Sort order of SEQUEST search results given by the mass of the protonated ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001049"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:sort by MH+"^^xsd:string ; rdfs:subClassOf obo:MS_1001041, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001050 obo:IAO_0000115 "Sort order of SEQUEST search results given by the probability."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001050"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:sort by P"^^xsd:string ; rdfs:subClassOf obo:MS_1001041, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001051 obo:IAO_0000115 "OBSOLETE: use attribute independent in mzIdentML instead. Description of multiple enzyme digestion protocol, if any."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001051"^^xsd:string ; a owl:Class ; rdfs:label "multiple enzyme combination rules"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001052 obo:IAO_0000115 "Sort order of SEQUEST search results given by the previous amino acid."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001052"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:sort by PreviousAminoAcid"^^xsd:string ; rdfs:subClassOf obo:MS_1001041, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001053 obo:IAO_0000115 "Sort order of SEQUEST search results given by the reference."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001053"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:sort by Ref"^^xsd:string ; rdfs:subClassOf obo:MS_1001041, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001055 obo:IAO_0000115 "Modification parameters for the search engine run."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001055"^^xsd:string ; a owl:Class ; rdfs:label "modification parameters"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001000 ] . obo:MS_1001056 obo:IAO_0000115 "The specificity rules for the modifications applied by the search engine."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001056"^^xsd:string ; a owl:Class ; rdfs:label "modification specificity rule"^^xsd:string ; rdfs:subClassOf obo:MS_1001055 . obo:MS_1001057 obo:IAO_0000115 "OBSOLETE: Tolerance on types."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001057"^^xsd:string ; a owl:Class ; rdfs:label "tolerance on types"^^xsd:string ; rdfs:subClassOf obo:MS_1001055 ; owl:deprecated true . obo:MS_1001058 obo:IAO_0000115 "The quality estimation was done manually."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001058"^^xsd:string ; a owl:Class ; rdfs:label "quality estimation by manual validation"^^xsd:string ; rdfs:subClassOf obo:MS_1001060 . obo:MS_1001059 obo:IAO_0000115 "Sort order of SEQUEST search results given by the result 'Sp' of 'Rank/Sp' in the out file (peptide)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001059"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:sort by RSp"^^xsd:string ; rdfs:subClassOf obo:MS_1001041, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001060 obo:IAO_0000115 "Method for quality estimation (manually or with decoy database)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001060"^^xsd:string ; a owl:Class ; rdfs:label "quality estimation method details"^^xsd:string ; rdfs:subClassOf obo:MS_1001249 . obo:MS_1001061 obo:IAO_0000115 "OBSOLETE: replaced by MS:1000336 (neutral loss): Leave this to PSI-MOD."^^xsd:string ; obo:IAO_0100001 "MS:1000336"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001061"^^xsd:string ; a owl:Class ; rdfs:label "neutral loss"^^xsd:string ; rdfs:subClassOf obo:MS_1001055 ; owl:deprecated true . obo:MS_1001062 obo:IAO_0000115 "Mascot MGF file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001062"^^xsd:string ; a owl:Class ; rdfs:label "Mascot MGF format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1001065 obo:IAO_0000115 "OBSOLETE: There is Phenyx:ScoringModel for Phenyx! Scoring model (more detailed granularity). TODO: add some child terms."^^xsd:string ; obo:IAO_0100001 "MS:1001961"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001065"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete and is replaced by the term (MS:1001961)."^^xsd:string ; rdfs:label "TODOscoring model"^^xsd:string ; rdfs:subClassOf obo:MS_1001249 ; owl:deprecated true . obo:MS_1001066 obo:IAO_0000115 "The description of the DEPRECATED ion fragment series (including charges and neutral losses) that are considered by the search engine."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001066"^^xsd:string ; a owl:Class ; rdfs:label "ions series considered in search"^^xsd:string ; rdfs:subClassOf obo:MS_1001249 . obo:MS_1001068 obo:IAO_0000115 "Sort order of SEQUEST search results by the Sp score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001068"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:sort by Sp"^^xsd:string ; rdfs:subClassOf obo:MS_1001041, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001069 obo:IAO_0000115 "Sort order of SEQUEST search results given by the total ion current."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001069"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:sort by TIC"^^xsd:string ; rdfs:subClassOf obo:MS_1001041, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001070 obo:IAO_0000115 "Sort order of SEQUEST search results given by the scan number."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001070"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:sort by Scan"^^xsd:string ; rdfs:subClassOf obo:MS_1001041, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001071 obo:IAO_0000115 "Sort order of SEQUEST search results given by the sequence."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001071"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:sort by Sequence"^^xsd:string ; rdfs:subClassOf obo:MS_1001041, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001072 obo:IAO_0000115 "Sort order of SEQUEST search results given by the SEQUEST result 'Sf'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001072"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:sort by Sf"^^xsd:string ; rdfs:subClassOf obo:MS_1001041, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001073 obo:IAO_0000115 "Database contains amino acid sequences."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001073"^^xsd:string ; a owl:Class ; rdfs:label "database type amino acid"^^xsd:string ; rdfs:subClassOf obo:MS_1001018 . obo:MS_1001079 obo:IAO_0000115 "Database contains nucleic acid sequences."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001079"^^xsd:string ; a owl:Class ; rdfs:label "database type nucleotide"^^xsd:string ; rdfs:subClassOf obo:MS_1001018 . obo:MS_1001080 obo:IAO_0000115 "Enumeration of type of search value (i.e. from PMF, sequence tag, MS2)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001080"^^xsd:string ; a owl:Class ; rdfs:label "search type"^^xsd:string ; rdfs:subClassOf obo:MS_1001249 . obo:MS_1001081 obo:IAO_0000115 "A peptide mass fingerprint search."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001081"^^xsd:string ; a owl:Class ; rdfs:label "pmf search"^^xsd:string ; rdfs:subClassOf obo:MS_1001080 . obo:MS_1001082 obo:IAO_0000115 "A sequence tag search."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001082"^^xsd:string ; a owl:Class ; rdfs:label "tag search"^^xsd:string ; rdfs:subClassOf obo:MS_1001080 . obo:MS_1001083 obo:IAO_0000115 "An MS2 search (with fragment ions)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001083"^^xsd:string ; a owl:Class ; rdfs:label "ms-ms search"^^xsd:string ; rdfs:subClassOf obo:MS_1001080 . obo:MS_1001084 obo:IAO_0000115 "Non-redundant GenBank sequence database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001084"^^xsd:string ; a owl:Class ; rdfs:label "database nr"^^xsd:string ; rdfs:subClassOf obo:MS_1001013 . obo:MS_1001085 obo:IAO_0000115 "Protein level information."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001085"^^xsd:string ; a owl:Class ; rdfs:label "protein-level identification attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1002694 . obo:MS_1001086 obo:IAO_0000115 "Sort order of SEQUEST search results by the correlation score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001086"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:sort by XCorr"^^xsd:string ; rdfs:subClassOf obo:MS_1001041, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001087 obo:IAO_0000115 "SEQUEST View / Process Input Parameters."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001087"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:ProcessCV"^^xsd:string ; rdfs:subClassOf obo:MS_1002096 . obo:MS_1001088 obo:IAO_0000115 "The protein description line from the sequence entry in the source database FASTA file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001088"^^xsd:string ; a owl:Class ; rdfs:label "protein description"^^xsd:string ; rdfs:subClassOf obo:MS_1001085, obo:MS_1001342, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001089 obo:IAO_0000115 "The taxonomy of the resultant molecule from the search."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001089"^^xsd:string ; a owl:Class ; rdfs:label "molecule taxonomy"^^xsd:string ; rdfs:subClassOf obo:MS_1001085, obo:MS_1001342, obo:MS_1001512, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001090 obo:IAO_0000115 "OBSOLETE: The system used to indicate taxonomy. There should be an enumerated list of options: latin name, NCBI TaxID, common name, Swiss-Prot species ID (ex. RABIT from the full protein ID ALBU_RABIT)."^^xsd:string ; obo:IAO_0100001 "MS:1001467"^^xsd:string, "MS:1001468"^^xsd:string, "MS:1001469"^^xsd:string, "MS:1001470"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001090"^^xsd:string ; a owl:Class ; rdfs:label "taxonomy nomenclature"^^xsd:string ; rdfs:subClassOf obo:MS_1001089 ; owl:deprecated true . obo:MS_1001091 oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001091"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it is ambiguous and is replaced by NoCleavage (MS:1001955) and unspecific cleavage (MS:1001956)."^^xsd:string ; rdfs:label "NoEnzyme"^^xsd:string ; rdfs:subClassOf obo:MS_1001045 ; owl:deprecated true . obo:MS_1001092 obo:IAO_0000115 "Identification confidence metric for a peptide."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001092"^^xsd:string ; a owl:Class ; rdfs:label "peptide sequence-level identification statistic"^^xsd:string ; rdfs:subClassOf obo:MS_1001105 . obo:MS_1001093 obo:IAO_0000115 "The percent coverage for the protein based upon the matched peptide sequences (can be calculated)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001093"^^xsd:string ; a owl:Class ; rdfs:label "sequence coverage"^^xsd:string ; rdfs:subClassOf obo:MS_1001085, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_decimal ] . obo:MS_1001094 obo:IAO_0000115 "Sort order of SEQUEST search results given by the charge."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001094"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:sort by z"^^xsd:string ; rdfs:subClassOf obo:MS_1001041, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001095 oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001095"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:ProcessAll"^^xsd:string ; rdfs:subClassOf obo:MS_1001087, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001096 obo:IAO_0000115 "Specify \"percentage\" as value of the CVParam."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001096"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:TopPercentMostIntense"^^xsd:string ; rdfs:subClassOf obo:MS_1001087, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001097 obo:IAO_0000115 "This counts distinct sequences hitting the protein without regard to a minimal confidence threshold."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001097"^^xsd:string ; a owl:Class ; rdfs:label "distinct peptide sequences"^^xsd:string ; rdfs:subClassOf obo:MS_1001085, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_nonNegativeInteger ] . obo:MS_1001098 obo:IAO_0000115 "This counts the number of distinct peptide sequences. Multiple charge states and multiple modification states do NOT count as multiple sequences. The definition of 'confident' must be qualified elsewhere."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001098"^^xsd:string ; a owl:Class ; rdfs:label "confident distinct peptide sequences"^^xsd:string ; rdfs:subClassOf obo:MS_1001085, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_nonNegativeInteger ] . obo:MS_1001099 obo:IAO_0000115 "The point of this entry is to define what is meant by confident for the term Confident distinct peptide sequence and/or Confident peptides. Example 1 - metric=Paragon:Confidence value=95 sense=greater than Example 2 - metric=Mascot:Eval value=0.05 sense=less than."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001099"^^xsd:string ; a owl:Class ; rdfs:label "confident peptide qualification"^^xsd:string ; rdfs:subClassOf obo:MS_1001085, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_nonNegativeInteger ] . obo:MS_1001100 obo:IAO_0000115 "This counts the number of peptide sequences without regard to whether they are distinct. Multiple charges states and multiple modification states DO count as multiple peptides. The definition of 'confident' must be qualified elsewhere."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001100"^^xsd:string ; a owl:Class ; rdfs:label "confident peptide sequence number"^^xsd:string ; rdfs:subClassOf obo:MS_1001085, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_nonNegativeInteger ] . obo:MS_1001101 obo:IAO_0000115 "Protein group or subset relationships."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001101"^^xsd:string ; a owl:Class ; rdfs:label "protein group or subset relationship"^^xsd:string ; rdfs:subClassOf obo:MS_1001085 . obo:MS_1001102 oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001102"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:Chromatogram"^^xsd:string ; rdfs:subClassOf obo:MS_1001006, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001103 oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001103"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:InfoAndLog"^^xsd:string ; rdfs:subClassOf obo:MS_1001006, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001104 obo:IAO_0000115 "The name of the UniProtKB/Swiss-Prot knowledgebase."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001104"^^xsd:string ; a owl:Class ; rdfs:label "database UniProtKB/Swiss-Prot"^^xsd:string ; rdfs:subClassOf obo:MS_1002126 . obo:MS_1001105 obo:IAO_0000115 "Peptide level information."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001105"^^xsd:string ; a owl:Class ; rdfs:label "peptide sequence-level identification attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1002694 . obo:MS_1001106 obo:IAO_0000115 "Specify \"number\" as value of the CVParam."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001106"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:TopNumber"^^xsd:string ; rdfs:subClassOf obo:MS_1001087, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ] . obo:MS_1001107 obo:IAO_0000115 "Source file for this mzIdentML was a data set in a database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001107"^^xsd:string ; a owl:Class ; rdfs:label "data stored in database"^^xsd:string ; rdfs:subClassOf obo:MS_1001040 . obo:MS_1001108 obo:IAO_0000115 "Parameter information, type of product: a ion with charge on the N-terminal side."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001108"^^xsd:string ; a owl:Class ; rdfs:label "param: a ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002473 . obo:MS_1001109 obo:IAO_0000115 "Specify cull string as value of the CVParam."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001109"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:CullTo"^^xsd:string ; rdfs:subClassOf obo:MS_1001087, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001110 obo:IAO_0000115 "SEQUEST Mode Input Parameters."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001110"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:modeCV"^^xsd:string ; rdfs:subClassOf obo:MS_1002096 . obo:MS_1001111 oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001111"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:Full"^^xsd:string ; rdfs:subClassOf obo:MS_1001110, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001112 obo:IAO_0000115 "Residue preceding the first amino acid in the peptide sequence as it occurs in the protein. Use 'N-term' to denote if the peptide starts at the N terminus of the protein."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001112"^^xsd:string ; a owl:Class ; rdfs:label "n-terminal flanking residue"^^xsd:string ; rdfs:subClassOf obo:MS_1001105, obo:MS_1003046, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001113 obo:IAO_0000115 "Residue following the last amino acid in the peptide sequence as it occurs in the protein. Use 'C-term' to denote if the peptide ends at the C terminus of the protein."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001113"^^xsd:string ; a owl:Class ; rdfs:label "c-terminal flanking residue"^^xsd:string ; rdfs:subClassOf obo:MS_1001105, obo:MS_1003046, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001114 obo:IAO_0000115 "OBSOLETE Retention time of the spectrum from the source file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001114"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because scan start time (MS:1000016) should be used instead."^^xsd:string ; rdfs:label "retention time(s)"^^xsd:string ; rdfs:subClassOf obo:MS_1001105, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000031 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] ; owl:deprecated true . obo:MS_1001115 obo:IAO_0000115 "OBSOLETE: use spectrumID attribute of SpectrumIdentificationResult. Take from mzData."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001115"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "scan number(s)"^^xsd:string ; owl:deprecated true . obo:MS_1001116 obo:IAO_0000115 "Results specific for one protein as part of a protein ambiguity group (a result not valid for all the other proteins in the protein ambiguity group)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001116"^^xsd:string ; a owl:Class ; rdfs:label "single protein identification statistic"^^xsd:string ; rdfs:subClassOf obo:MS_1001085 . obo:MS_1001117 obo:IAO_0000115 "The theoretical neutral mass of the molecule (e.g. the peptide sequence and its modifications) not including its charge carrier."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001117"^^xsd:string ; a owl:Class ; rdfs:label "theoretical mass"^^xsd:string ; rdfs:subClassOf obo:MS_1001105, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000221 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001118 obo:IAO_0000115 "Parameter information, type of product: b ion with charge on the N-terminal side."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001118"^^xsd:string ; a owl:Class ; rdfs:label "param: b ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002473 . obo:MS_1001119 obo:IAO_0000115 "Parameter information, type of product: c ion with charge on the N-terminal side."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001119"^^xsd:string ; a owl:Class ; rdfs:label "param: c ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002473 . obo:MS_1001120 oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001120"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:FormatAndLinks"^^xsd:string ; rdfs:subClassOf obo:MS_1001110, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001121 obo:IAO_0000115 "The number of peaks that were matched as qualified by the ion series considered field. If a peak matches multiple ions then only 1 would be added the count."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001121"^^xsd:string ; a owl:Class ; rdfs:label "number of matched peaks"^^xsd:string ; rdfs:subClassOf obo:MS_1001105, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_nonNegativeInteger ] . obo:MS_1001122 obo:IAO_0000115 "The ion series that were used during the calculation of the count (e.g. a, b, c, d, v, w, x, y, z, a-H2O, a-NH3, b-H2O, b-NH3, y-H2O, y-NH3, b-H20, b+, z-, z+1, z+2, b-H3PO4, y-H3PO4, immonium, internal ya, internal yb)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001122"^^xsd:string ; a owl:Class ; rdfs:label "ions series considered"^^xsd:string ; rdfs:subClassOf obo:MS_1001105 . obo:MS_1001123 obo:IAO_0000115 "The number of peaks from the original peak list that are used to calculate the scores for a particular search engine. All ions that have the opportunity to match or be counted even if they don't."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001123"^^xsd:string ; a owl:Class ; rdfs:label "number of peaks used"^^xsd:string ; rdfs:subClassOf obo:MS_1001105, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_nonNegativeInteger ] . obo:MS_1001124 obo:IAO_0000115 "The number of peaks from the original peaks listed that were submitted to the search engine."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001124"^^xsd:string ; a owl:Class ; rdfs:label "number of peaks submitted"^^xsd:string ; rdfs:subClassOf obo:MS_1001105, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_nonNegativeInteger ] . obo:MS_1001125 obo:IAO_0000115 "Result of quality estimation: decision of a manual validation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001125"^^xsd:string ; a owl:Class ; rdfs:label "manual validation"^^xsd:string ; rdfs:subClassOf obo:MS_1001092, obo:MS_1001116, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001126 oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001126"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:Fast"^^xsd:string ; rdfs:subClassOf obo:MS_1001110, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001127 obo:IAO_0000115 "Accessions Containing Sequence - Accessions for each protein containing this peptide."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001127"^^xsd:string ; a owl:Class ; rdfs:label "peptide sharing details"^^xsd:string ; rdfs:subClassOf obo:MS_1001105 . obo:MS_1001128 obo:IAO_0000115 "SEQUEST Select Input Parameters."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001128"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:selectCV"^^xsd:string ; rdfs:subClassOf obo:MS_1002096 . obo:MS_1001129 obo:IAO_0000115 "Quantification information."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001129"^^xsd:string ; a owl:Class ; rdfs:label "quantification information"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001000 ] . obo:MS_1001130 obo:IAO_0000115 "OBSOLETE Peptide raw area."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001130"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it is replaced by 'MS1 feature area' (MS:1001844)."^^xsd:string ; rdfs:label "peptide raw area"^^xsd:string ; rdfs:subClassOf obo:MS_1002737, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] ; owl:deprecated true . obo:MS_1001131 obo:IAO_0000115 "Error on peptide area."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001131"^^xsd:string ; a owl:Class ; rdfs:label "error on peptide area"^^xsd:string ; rdfs:subClassOf obo:MS_1002737, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001132 obo:IAO_0000115 "Peptide ratio."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001132"^^xsd:string ; a owl:Class ; rdfs:label "peptide ratio"^^xsd:string ; rdfs:subClassOf obo:MS_1002737, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001133 obo:IAO_0000115 "Error on peptide ratio."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001133"^^xsd:string ; a owl:Class ; rdfs:label "error on peptide ratio"^^xsd:string ; rdfs:subClassOf obo:MS_1002737, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001134 obo:IAO_0000115 "Protein ratio."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001134"^^xsd:string ; a owl:Class ; rdfs:label "protein ratio"^^xsd:string ; rdfs:subClassOf obo:MS_1002738, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001135 obo:IAO_0000115 "Error on protein ratio."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001135"^^xsd:string ; a owl:Class ; rdfs:label "error on protein ratio"^^xsd:string ; rdfs:subClassOf obo:MS_1002738, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001136 obo:IAO_0000115 "OBSOLETE P-value (protein diff from 1 randomly)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001136"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it is replaced by 't-test p-value' (MS:1001855)."^^xsd:string ; rdfs:label "p-value (protein diff from 1 randomly)"^^xsd:string ; rdfs:subClassOf obo:MS_1002738, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] ; owl:deprecated true . obo:MS_1001137 obo:IAO_0000115 "Absolute quantity in terms of real concentration or molecule copy number in sample."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001137"^^xsd:string ; a owl:Class ; rdfs:label "absolute quantity"^^xsd:string ; rdfs:subClassOf obo:MS_1001805, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001138 obo:IAO_0000115 "Error on absolute quantity."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001138"^^xsd:string ; a owl:Class ; rdfs:label "error on absolute quantity"^^xsd:string ; rdfs:subClassOf obo:MS_1001805, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001139 obo:IAO_0000115 "Quantitation software name."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001139"^^xsd:string ; a owl:Class ; rdfs:label "quantitation software name"^^xsd:string ; rdfs:subClassOf obo:MS_1000531, obo:MS_1001129 . obo:MS_1001140 obo:IAO_0000115 "OBSOLETE Quantitation software version."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001140"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because part of mzQuantML schema."^^xsd:string ; rdfs:label "quantitation software version"^^xsd:string ; rdfs:subClassOf obo:MS_1001129 ; owl:deprecated true . obo:MS_1001141 obo:IAO_0000115 "The intensity of the precursor ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001141"^^xsd:string ; a owl:Class ; rdfs:label "intensity of precursor ion"^^xsd:string ; rdfs:subClassOf obo:MS_1001805, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001142 obo:IAO_0000115 "International Protein Index database for Homo sapiens sequences."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001142"^^xsd:string ; a owl:Class ; rdfs:label "database IPI_human"^^xsd:string ; rdfs:subClassOf obo:MS_1001013 . obo:MS_1001143 obo:IAO_0000115 "Search engine specific peptide spectrum match scores."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001143"^^xsd:string ; a owl:Class ; rdfs:label "PSM-level search engine specific statistic"^^xsd:string ; rdfs:subClassOf obo:MS_1002347 . obo:MS_1001144 oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001144"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:SelectDefault"^^xsd:string ; rdfs:subClassOf obo:MS_1001128 . obo:MS_1001145 obo:IAO_0000115 "SEQUEST Select Advanced Input Parameters."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001145"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:SelectAdvancedCV"^^xsd:string ; rdfs:subClassOf obo:MS_1001128 . obo:MS_1001146 obo:IAO_0000115 "Ion a-NH3 parameter information, type of product: a ion with lost ammonia."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001146"^^xsd:string ; a owl:Class ; rdfs:label "param: a ion-NH3 DEPRECATED"^^xsd:string ; rdfs:subClassOf obo:MS_1001066 . obo:MS_1001147 oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001147"^^xsd:string ; a owl:Class ; rdfs:label "protein ambiguity group result details"^^xsd:string ; rdfs:subClassOf obo:MS_1001085, obo:MS_1001153 . obo:MS_1001148 obo:IAO_0000115 "Ion a-H2O if a significant and fragment includes STED."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001148"^^xsd:string ; a owl:Class ; rdfs:label "param: a ion-H2O DEPRECATED"^^xsd:string ; rdfs:subClassOf obo:MS_1001066 . obo:MS_1001149 obo:IAO_0000115 "Ion b-NH3 parameter information, type of product: b ion with lost ammonia."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001149"^^xsd:string ; a owl:Class ; rdfs:label "param: b ion-NH3 DEPRECATED"^^xsd:string ; rdfs:subClassOf obo:MS_1001066 . obo:MS_1001150 obo:IAO_0000115 "Ion b-H2O if b significant and fragment includes STED."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001150"^^xsd:string ; a owl:Class ; rdfs:label "param: b ion-H2O DEPRECATED"^^xsd:string ; rdfs:subClassOf obo:MS_1001066 . obo:MS_1001151 obo:IAO_0000115 "Ion y-NH3 parameter information, type of product: y ion with lost ammonia."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001151"^^xsd:string ; a owl:Class ; rdfs:label "param: y ion-NH3 DEPRECATED"^^xsd:string ; rdfs:subClassOf obo:MS_1001066 . obo:MS_1001152 oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001152"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete - use MS:1001262 and MS:1002455 instead."^^xsd:string ; rdfs:label "param: y ion-H2O DEPRECATED"^^xsd:string ; rdfs:subClassOf obo:MS_1001066 . obo:MS_1001153 obo:IAO_0000115 "Search engine specific scores."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001153"^^xsd:string ; a owl:Class ; rdfs:label "search engine specific score"^^xsd:string ; rdfs:subClassOf obo:MS_1002694 . obo:MS_1001154 obo:IAO_0000115 "The SEQUEST result 'Probability'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001154"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:probability"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001155 obo:IAO_0000115 "The SEQUEST result 'XCorr'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001155"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:xcorr"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001156 obo:IAO_0000115 "The SEQUEST result 'DeltaCn'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001156"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:deltacn"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001157 obo:IAO_0000115 "The SEQUEST result 'Sp' (protein)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001157"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:sp"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001158 oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001158"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:Uniq"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001159 obo:IAO_0000115 "The SEQUEST result 'Expectation value'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001159"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:expectation value"^^xsd:string ; rdfs:subClassOf obo:MS_1001153, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001160 obo:IAO_0000115 "The SEQUEST result 'Sf'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001160"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:sf"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001161 obo:IAO_0000115 "The SEQUEST result 'Matched Ions'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001161"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:matched ions"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1001162 obo:IAO_0000115 "The SEQUEST result 'Total Ions'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001162"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:total ions"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1001163 obo:IAO_0000115 "The SEQUEST result 'Consensus Score'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001163"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:consensus score"^^xsd:string ; rdfs:subClassOf obo:MS_1001153, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001164 obo:IAO_0000115 "The Paragon result 'Unused ProtScore'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001164"^^xsd:string ; a owl:Class ; rdfs:label "Paragon:unused protscore"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, obo:MS_1002368, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001165 obo:IAO_0000115 "The Paragon result 'Total ProtScore'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001165"^^xsd:string ; a owl:Class ; rdfs:label "Paragon:total protscore"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, obo:MS_1002368, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001166 obo:IAO_0000115 "The Paragon result 'Score'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001166"^^xsd:string ; a owl:Class ; rdfs:label "Paragon:score"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001167 obo:IAO_0000115 "The Paragon result 'Confidence'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001167"^^xsd:string ; a owl:Class ; rdfs:label "Paragon:confidence"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001168 obo:IAO_0000115 "The Paragon result 'Expression Error Factor'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001168"^^xsd:string ; a owl:Class ; rdfs:label "Paragon:expression error factor"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001169 obo:IAO_0000115 "The Paragon result 'Expression change P-value'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001169"^^xsd:string ; a owl:Class ; rdfs:label "Paragon:expression change p-value"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001170 obo:IAO_0000115 "The Paragon result 'Contrib'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001170"^^xsd:string ; a owl:Class ; rdfs:label "Paragon:contrib"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001171 obo:IAO_0000115 "The Mascot result 'Score'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001171"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001172 obo:IAO_0000115 "The Mascot result 'expectation value'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001172"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:expectation value"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001173 obo:IAO_0000115 "The Mascot result 'Matched ions'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001173"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:matched ions"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_nonNegativeInteger ] . obo:MS_1001174 obo:IAO_0000115 "The Mascot result 'Total ions'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001174"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:total ions"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_nonNegativeInteger ] . obo:MS_1001175 obo:IAO_0000115 "A peptide matching multiple proteins."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001175"^^xsd:string ; a owl:Class ; rdfs:label "peptide shared in multiple proteins"^^xsd:string ; rdfs:subClassOf obo:MS_1001127 . obo:MS_1001176 obo:IAO_0000115 "Regular expression for Trypsin."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001176"^^xsd:string ; a owl:Class ; rdfs:label "(?<=[KR])(?!P)"^^xsd:string ; rdfs:subClassOf obo:MS_1001180 . obo:MS_1001177 obo:IAO_0000115 "Number of Molecular Hypothesis Considered - This is the number of molecules (e.g. peptides for proteomics) considered for a particular search."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001177"^^xsd:string ; a owl:Class ; rdfs:label "number of molecular hypothesis considered"^^xsd:string ; rdfs:subClassOf obo:MS_1001184, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_nonNegativeInteger ] . obo:MS_1001178 obo:IAO_0000115 "Expressed sequence tag nucleotide sequence database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001178"^^xsd:string ; a owl:Class ; rdfs:label "database EST"^^xsd:string ; rdfs:subClassOf obo:MS_1001079 . obo:MS_1001180 obo:IAO_0000115 "Regular expressions for cleavage enzymes."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001180"^^xsd:string ; a owl:Class ; rdfs:label "Cleavage agent regular expression"^^xsd:string ; rdfs:subClassOf obo:MS_1002479, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001044 ] . obo:MS_1001184 obo:IAO_0000115 "The details of the actual run of the search."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001184"^^xsd:string ; a owl:Class ; rdfs:label "search statistics"^^xsd:string ; rdfs:subClassOf obo:MS_1001405 . obo:MS_1001189 obo:IAO_0000115 "As parameter for search engine: apply the modification only at the N-terminus of a peptide."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001189"^^xsd:string ; a owl:Class ; rdfs:label "modification specificity peptide N-term"^^xsd:string ; rdfs:subClassOf obo:MS_1001056 . obo:MS_1001190 obo:IAO_0000115 "As parameter for search engine: apply the modification only at the C-terminus of a peptide."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001190"^^xsd:string ; a owl:Class ; rdfs:label "modification specificity peptide C-term"^^xsd:string ; rdfs:subClassOf obo:MS_1001056 . obo:MS_1001191 obo:IAO_0000115 "OBSOLETE Quality estimation by p-value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001191"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because now is split into peptide and protein terms."^^xsd:string ; rdfs:label "p-value"^^xsd:string ; rdfs:subClassOf obo:MS_1001092, obo:MS_1001198, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] ; owl:deprecated true . obo:MS_1001192 obo:IAO_0000115 "Result of quality estimation: Expect value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001192"^^xsd:string ; a owl:Class ; rdfs:label "Expect value"^^xsd:string ; rdfs:subClassOf obo:MS_1001092, obo:MS_1001116, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001193 obo:IAO_0000115 "Result of quality estimation: confidence score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001193"^^xsd:string ; a owl:Class ; rdfs:label "confidence score"^^xsd:string ; rdfs:subClassOf obo:MS_1001092, obo:MS_1001116, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001194 obo:IAO_0000115 "Quality estimation by decoy database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001194"^^xsd:string ; a owl:Class ; rdfs:label "quality estimation with decoy database"^^xsd:string ; rdfs:subClassOf obo:MS_1001060, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001195 obo:IAO_0000115 "Decoy type: Amino acids of protein sequences are used in reverse order."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001195"^^xsd:string ; a owl:Class ; rdfs:label "decoy DB type reverse"^^xsd:string ; rdfs:subClassOf obo:MS_1001450 . obo:MS_1001196 obo:IAO_0000115 "Decoy type: Amino acids of protein sequences are randomized (keeping the original protein mass)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001196"^^xsd:string ; a owl:Class ; rdfs:label "decoy DB type randomized"^^xsd:string ; rdfs:subClassOf obo:MS_1001450 . obo:MS_1001197 obo:IAO_0000115 "Decoy database composition: database contains original (target) and decoy entries."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001197"^^xsd:string ; a owl:Class ; rdfs:label "DB composition target+decoy"^^xsd:string ; rdfs:subClassOf obo:MS_1001450 . obo:MS_1001198 obo:IAO_0000115 "Identification confidence metric for a protein."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001198"^^xsd:string ; a owl:Class ; rdfs:label "protein identification confidence metric"^^xsd:string ; rdfs:subClassOf obo:MS_1001116 . obo:MS_1001199 obo:IAO_0000115 "Source file for this mzIdentML was in Mascot DAT file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001199"^^xsd:string ; a owl:Class ; rdfs:label "Mascot DAT format"^^xsd:string ; rdfs:subClassOf obo:MS_1001040 . obo:MS_1001200 obo:IAO_0000115 "Source file for this mzIdentML was in SEQUEST out file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001200"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST out file format"^^xsd:string ; rdfs:subClassOf obo:MS_1001040 . obo:MS_1001201 obo:IAO_0000115 "Maximum value of molecular weight filter."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001201"^^xsd:string ; a owl:Class ; rdfs:label "DB MW filter maximum"^^xsd:string ; rdfs:subClassOf obo:MS_1001512, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000221 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000222 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001202 obo:IAO_0000115 "Minimum value of molecular weight filter."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001202"^^xsd:string ; a owl:Class ; rdfs:label "DB MW filter minimum"^^xsd:string ; rdfs:subClassOf obo:MS_1001512, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000221 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000222 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001203 obo:IAO_0000115 "Maximum value of isoelectric point filter."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001203"^^xsd:string ; a owl:Class ; rdfs:label "DB PI filter maximum"^^xsd:string ; rdfs:subClassOf obo:MS_1001512, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001204 obo:IAO_0000115 "Minimum value of isoelectric point filter."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001204"^^xsd:string ; a owl:Class ; rdfs:label "DB PI filter minimum"^^xsd:string ; rdfs:subClassOf obo:MS_1001512, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001207 obo:IAO_0000115 "The name of the Mascot search engine."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001207"^^xsd:string ; a owl:Class ; rdfs:label "Mascot"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1001208 obo:IAO_0000115 "The name of the SEQUEST search engine."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001208"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1001209 obo:IAO_0000115 "The name of the Phenyx search engine."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001209"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1001210 obo:IAO_0000115 "The type of mass difference value to be considered by the search engine (monoisotopic or average)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001210"^^xsd:string ; a owl:Class ; rdfs:label "mass type settings"^^xsd:string ; rdfs:subClassOf obo:MS_1001249 . obo:MS_1001211 obo:IAO_0000115 "Mass type setting for parent mass was monoisotopic."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001211"^^xsd:string ; a owl:Class ; rdfs:label "parent mass type mono"^^xsd:string ; rdfs:subClassOf obo:MS_1001210 . obo:MS_1001212 obo:IAO_0000115 "Mass type setting for parent mass was average isotopic."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001212"^^xsd:string ; a owl:Class ; rdfs:label "parent mass type average"^^xsd:string ; rdfs:subClassOf obo:MS_1001210 . obo:MS_1001213 obo:IAO_0000115 "OBSOLETE: Scores and global result characteristics."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001213"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "search result details"^^xsd:string ; owl:deprecated true . obo:MS_1001214 obo:IAO_0000115 "Estimation of the global false discovery rate of proteins."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001214"^^xsd:string ; a owl:Class ; rdfs:label "protein-level global FDR"^^xsd:string ; rdfs:subClassOf obo:MS_1002705, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001215 obo:IAO_0000115 "The SEQUEST result 'Sp' in out file (peptide)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001215"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:PeptideSp"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001217 obo:IAO_0000115 "The SEQUEST result 'Sp' of 'Rank/Sp' in out file (peptide). Also called 'rsp'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001217"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:PeptideRankSp"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1001218 obo:IAO_0000115 "The SEQUEST result '#' in out file (peptide)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001218"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:PeptideNumber"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1001219 obo:IAO_0000115 "The SEQUEST result 'Id#' in out file (peptide)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001219"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:PeptideIdnumber"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1001220 obo:IAO_0000115 "Fragmentation information, type of product: y ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001220"^^xsd:string ; a owl:Class ; rdfs:label "frag: y ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001221 obo:IAO_0000115 "Fragmentation information like ion types."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001221"^^xsd:string ; a owl:Class ; rdfs:label "product ion attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1002694 . obo:MS_1001222 obo:IAO_0000115 "Fragmentation information, type of product: b ion without water."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001222"^^xsd:string ; a owl:Class ; rdfs:label "frag: b ion - H2O"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001223 obo:IAO_0000115 "Fragmentation information, type of product: y ion without water."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001223"^^xsd:string ; a owl:Class ; rdfs:label "frag: y ion - H2O"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001224 obo:IAO_0000115 "Fragmentation information, type of product: b ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001224"^^xsd:string ; a owl:Class ; rdfs:label "frag: b ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001225 obo:IAO_0000115 "The m/z of the product ion."^^xsd:string ; oboInOwl:hasExactSynonym "fragment ion m/z"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001225"^^xsd:string ; a owl:Class ; rdfs:label "product ion m/z"^^xsd:string ; rdfs:subClassOf obo:MS_1001221, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ] . obo:MS_1001226 obo:IAO_0000115 "The intensity of a single product ion."^^xsd:string ; oboInOwl:hasExactSynonym "fragment ion intensity"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001226"^^xsd:string ; a owl:Class ; rdfs:label "product ion intensity"^^xsd:string ; rdfs:subClassOf obo:MS_1001221, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000131 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000132 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000814 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000905 ] . obo:MS_1001227 obo:IAO_0000115 "The product ion m/z error."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001227"^^xsd:string ; a owl:Class ; rdfs:label "product ion m/z error"^^xsd:string ; rdfs:subClassOf obo:MS_1001221, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000166 ] . obo:MS_1001228 obo:IAO_0000115 "Fragmentation information, type of product: x ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001228"^^xsd:string ; a owl:Class ; rdfs:label "frag: x ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001229 obo:IAO_0000115 "Fragmentation information, type of product: a ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001229"^^xsd:string ; a owl:Class ; rdfs:label "frag: a ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001230 obo:IAO_0000115 "Fragmentation information, type of product: z ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001230"^^xsd:string ; a owl:Class ; rdfs:label "frag: z ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001231 obo:IAO_0000115 "Fragmentation information, type of product: c ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001231"^^xsd:string ; a owl:Class ; rdfs:label "frag: c ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001232 obo:IAO_0000115 "Ion b-NH3 fragmentation information, type of product: b ion without ammonia."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001232"^^xsd:string ; a owl:Class ; rdfs:label "frag: b ion - NH3"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001233 obo:IAO_0000115 "Ion y-NH3 fragmentation information, type of product: y ion without ammonia."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001233"^^xsd:string ; a owl:Class ; rdfs:label "frag: y ion - NH3"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001234 obo:IAO_0000115 "Fragmentation information, type of product: a ion without water."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001234"^^xsd:string ; a owl:Class ; rdfs:label "frag: a ion - H2O"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001235 obo:IAO_0000115 "Ion a-NH3 fragmentation information, type of product: a ion without ammonia."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001235"^^xsd:string ; a owl:Class ; rdfs:label "frag: a ion - NH3"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001236 obo:IAO_0000115 "Fragmentation information, type of product: d ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001236"^^xsd:string ; a owl:Class ; rdfs:label "frag: d ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001237 obo:IAO_0000115 "Fragmentation information, type of product: v ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001237"^^xsd:string ; a owl:Class ; rdfs:label "frag: v ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001238 obo:IAO_0000115 "Fragmentation information, type of product: w ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001238"^^xsd:string ; a owl:Class ; rdfs:label "frag: w ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001239 obo:IAO_0000115 "Fragmentation information, type of product: immonium ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001239"^^xsd:string ; a owl:Class ; rdfs:label "frag: immonium ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001240 obo:IAO_0000115 "Non-identified ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001240"^^xsd:string ; a owl:Class ; rdfs:label "non-identified ion"^^xsd:string ; rdfs:subClassOf obo:MS_1001221 . obo:MS_1001241 obo:IAO_0000115 "Co-eluting ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001241"^^xsd:string ; a owl:Class ; rdfs:label "co-eluting ion"^^xsd:string ; rdfs:subClassOf obo:MS_1001221 . obo:MS_1001242 obo:IAO_0000115 "Source file for this mzIdentML was a SEQUEST folder with its out files."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001242"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST out folder"^^xsd:string ; rdfs:subClassOf obo:MS_1001040 . obo:MS_1001243 obo:IAO_0000115 "Source file for this mzIdentML was a SEQUEST summary page (proteins)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001243"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST summary"^^xsd:string ; rdfs:subClassOf obo:MS_1001040 . obo:MS_1001245 obo:IAO_0000115 "PerSeptive peak list file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001245"^^xsd:string ; a owl:Class ; rdfs:label "PerSeptive PKS format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1001246 obo:IAO_0000115 "PE SCIEX peak list file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001246"^^xsd:string ; a owl:Class ; rdfs:label "SCIEX API III format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1001247 obo:IAO_0000115 "Bruker data exchange XML format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001247"^^xsd:string ; a owl:Class ; rdfs:label "Bruker XML format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1001249 obo:IAO_0000115 "Details describing the search input."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001249"^^xsd:string ; a owl:Class ; rdfs:label "search input details"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001000 ] . obo:MS_1001250 obo:IAO_0000115 "Result of quality estimation: the local FDR at the current position of a sorted list."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001250"^^xsd:string ; a owl:Class ; rdfs:label "local FDR"^^xsd:string ; rdfs:subClassOf obo:MS_1001092, obo:MS_1001116, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001251 obo:IAO_0000115 "Enzyme trypsin."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001251"^^xsd:string ; a owl:Class ; rdfs:label "Trypsin"^^xsd:string ; rdfs:subClassOf obo:MS_1001045, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001176 ] . obo:MS_1001252 obo:IAO_0000115 "Database source EBI."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001252"^^xsd:string ; a owl:Class ; rdfs:label "DB source EBI"^^xsd:string ; rdfs:subClassOf obo:MS_1001012 . obo:MS_1001253 obo:IAO_0000115 "Database source NCBI."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001253"^^xsd:string ; a owl:Class ; rdfs:label "DB source NCBI"^^xsd:string ; rdfs:subClassOf obo:MS_1001012 . obo:MS_1001254 obo:IAO_0000115 "Database source UniProt."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001254"^^xsd:string ; a owl:Class ; rdfs:label "DB source UniProt"^^xsd:string ; rdfs:subClassOf obo:MS_1001012 . obo:MS_1001255 obo:IAO_0000115 "Mass type setting for fragment mass was average isotopic."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001255"^^xsd:string ; a owl:Class ; rdfs:label "fragment mass type average"^^xsd:string ; rdfs:subClassOf obo:MS_1001210 . obo:MS_1001256 obo:IAO_0000115 "Mass type setting for fragment mass was monoisotopic."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001256"^^xsd:string ; a owl:Class ; rdfs:label "fragment mass type mono"^^xsd:string ; rdfs:subClassOf obo:MS_1001210 . obo:MS_1001257 obo:IAO_0000115 "Parameter information, type of product: side chain loss v ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001257"^^xsd:string ; a owl:Class ; rdfs:label "param: v ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002473 . obo:MS_1001258 obo:IAO_0000115 "Parameter information, type of product: side chain loss d ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001258"^^xsd:string ; a owl:Class ; rdfs:label "param: d ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002473 . obo:MS_1001259 obo:IAO_0000115 "Parameter information, type of product: immonium ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001259"^^xsd:string ; a owl:Class ; rdfs:label "param: immonium ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002473 . obo:MS_1001260 obo:IAO_0000115 "Parameter information, type of product: side chain loss w ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001260"^^xsd:string ; a owl:Class ; rdfs:label "param: w ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002473 . obo:MS_1001261 obo:IAO_0000115 "Parameter information, type of product: x ion with charge on the C-terminal side."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001261"^^xsd:string ; a owl:Class ; rdfs:label "param: x ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002473 . obo:MS_1001262 obo:IAO_0000115 "Parameter information, type of product: y ion with charge on the C-terminal side."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001262"^^xsd:string ; a owl:Class ; rdfs:label "param: y ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002473 . obo:MS_1001263 obo:IAO_0000115 "Parameter information, type of product: z ion with charge on the C-terminal side."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001263"^^xsd:string ; a owl:Class ; rdfs:label "param: z ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002473 . obo:MS_1001266 obo:IAO_0000115 "Role of a Person or Organization."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001266"^^xsd:string ; a owl:Class ; rdfs:label "role type"^^xsd:string ; rdfs:subClassOf obo:MS_1000585 . obo:MS_1001267 obo:IAO_0000115 "Software vendor role."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001267"^^xsd:string ; a owl:Class ; rdfs:label "software vendor"^^xsd:string ; rdfs:subClassOf obo:MS_1001266 . obo:MS_1001268 obo:IAO_0000115 "Programmer role."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001268"^^xsd:string ; a owl:Class ; rdfs:label "programmer"^^xsd:string ; rdfs:subClassOf obo:MS_1001266, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001269 obo:IAO_0000115 "Instrument vendor role."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001269"^^xsd:string ; a owl:Class ; rdfs:label "instrument vendor"^^xsd:string ; rdfs:subClassOf obo:MS_1001266, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001270 obo:IAO_0000115 "Lab personnel role."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001270"^^xsd:string ; a owl:Class ; rdfs:label "lab personnel"^^xsd:string ; rdfs:subClassOf obo:MS_1001266, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001271 obo:IAO_0000115 "Researcher role."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001271"^^xsd:string ; a owl:Class ; rdfs:label "researcher"^^xsd:string ; rdfs:subClassOf obo:MS_1001266 . obo:MS_1001272 obo:IAO_0000115 "Regular expression for Arg-C."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001272"^^xsd:string ; a owl:Class ; rdfs:label "(?<=R)(?!P)"^^xsd:string ; rdfs:subClassOf obo:MS_1001180 . obo:MS_1001273 obo:IAO_0000115 "Regular expression for Asp-N."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001273"^^xsd:string ; a owl:Class ; rdfs:label "(?=[BD])"^^xsd:string ; rdfs:subClassOf obo:MS_1001180 . obo:MS_1001274 obo:IAO_0000115 "Regular expression for Asp-N-ambic."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001274"^^xsd:string ; a owl:Class ; rdfs:label "(?=[DE])"^^xsd:string ; rdfs:subClassOf obo:MS_1001180 . obo:MS_1001275 obo:IAO_0000115 "Source data for this mzIdentML was a ProteinScape SearchEvent."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001275"^^xsd:string ; a owl:Class ; rdfs:label "ProteinScape SearchEvent"^^xsd:string ; rdfs:subClassOf obo:MS_1001040 . obo:MS_1001276 obo:IAO_0000115 "Source data for this mzIdentML was a ProteinScape Gel."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001276"^^xsd:string ; a owl:Class ; rdfs:label "ProteinScape Gel"^^xsd:string ; rdfs:subClassOf obo:MS_1001040 . obo:MS_1001283 obo:IAO_0000115 "Specify the regular expression for decoy accession numbers."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001283"^^xsd:string ; a owl:Class ; rdfs:label "decoy DB accession regexp"^^xsd:string ; rdfs:subClassOf obo:MS_1001450, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001284 obo:IAO_0000115 "OBSOLETE The name of the database, the search database was derived from."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001284"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^xsd:string ; rdfs:label "decoy DB derived from"^^xsd:string ; rdfs:subClassOf obo:MS_1001450 ; owl:deprecated true . obo:MS_1001285 obo:IAO_0000115 "International Protein Index database for Mus musculus sequences."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001285"^^xsd:string ; a owl:Class ; rdfs:label "database IPI_mouse"^^xsd:string ; rdfs:subClassOf obo:MS_1001013 . obo:MS_1001286 obo:IAO_0000115 "International Protein Index database for Rattus norvegicus sequences."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001286"^^xsd:string ; a owl:Class ; rdfs:label "database IPI_rat"^^xsd:string ; rdfs:subClassOf obo:MS_1001013 . obo:MS_1001287 obo:IAO_0000115 "International Protein Index database for Danio rerio sequences."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001287"^^xsd:string ; a owl:Class ; rdfs:label "database IPI_zebrafish"^^xsd:string ; rdfs:subClassOf obo:MS_1001013 . obo:MS_1001288 obo:IAO_0000115 "International Protein Index database for Gallus gallus sequences."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001288"^^xsd:string ; a owl:Class ; rdfs:label "database IPI_chicken"^^xsd:string ; rdfs:subClassOf obo:MS_1001013 . obo:MS_1001289 obo:IAO_0000115 "International Protein Index database for Bos taurus sequences."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001289"^^xsd:string ; a owl:Class ; rdfs:label "database IPI_cow"^^xsd:string ; rdfs:subClassOf obo:MS_1001013 . obo:MS_1001290 obo:IAO_0000115 "International Protein Index database for Arabidopsis thaliana sequences."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001290"^^xsd:string ; a owl:Class ; rdfs:label "database IPI_arabidopsis"^^xsd:string ; rdfs:subClassOf obo:MS_1001013 . obo:MS_1001291 obo:IAO_0000115 "OBSOLETE Decoy database from a non-redundant GenBank sequence database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001291"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^xsd:string ; rdfs:label "decoy DB from nr"^^xsd:string ; owl:deprecated true . obo:MS_1001292 obo:IAO_0000115 "OBSOLETE Decoy database from a International Protein Index database for Rattus norvegicus."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001292"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^xsd:string ; rdfs:label "decoy DB from IPI_rat"^^xsd:string ; owl:deprecated true . obo:MS_1001293 obo:IAO_0000115 "OBSOLETE Decoy database from a International Protein Index database for Mus musculus."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001293"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^xsd:string ; rdfs:label "decoy DB from IPI_mouse"^^xsd:string ; owl:deprecated true . obo:MS_1001294 obo:IAO_0000115 "OBSOLETE Decoy database from a International Protein Index database for Arabidopsis thaliana."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001294"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^xsd:string ; rdfs:label "decoy DB from IPI_arabidopsis"^^xsd:string ; owl:deprecated true . obo:MS_1001295 obo:IAO_0000115 "OBSOLETE Decoy database from an expressed sequence tag nucleotide sequence database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001295"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^xsd:string ; rdfs:label "decoy DB from EST"^^xsd:string ; owl:deprecated true . obo:MS_1001296 obo:IAO_0000115 "OBSOLETE Decoy database from a International Protein Index database for Danio rerio."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001296"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^xsd:string ; rdfs:label "decoy DB from IPI_zebrafish"^^xsd:string ; owl:deprecated true . obo:MS_1001297 obo:IAO_0000115 "OBSOLETE Decoy database from a Swiss-Prot protein sequence database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001297"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^xsd:string ; rdfs:label "decoy DB from UniProtKB/Swiss-Prot"^^xsd:string ; owl:deprecated true . obo:MS_1001298 obo:IAO_0000115 "OBSOLETE Decoy database from a International Protein Index database for Gallus gallus."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001298"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^xsd:string ; rdfs:label "decoy DB from IPI_chicken"^^xsd:string ; owl:deprecated true . obo:MS_1001299 obo:IAO_0000115 "OBSOLETE Decoy database from a International Protein Index database for Bos taurus."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001299"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^xsd:string ; rdfs:label "decoy DB from IPI_cow"^^xsd:string ; owl:deprecated true . obo:MS_1001300 obo:IAO_0000115 "OBSOLETE Decoy database from a International Protein Index database for Homo sapiens."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001300"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^xsd:string ; rdfs:label "decoy DB from IPI_human"^^xsd:string ; owl:deprecated true . obo:MS_1001301 obo:IAO_0000115 "The rank of the protein in a list sorted by the search engine."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001301"^^xsd:string ; a owl:Class ; rdfs:label "protein rank"^^xsd:string ; rdfs:subClassOf obo:MS_1001085, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001302 obo:IAO_0000115 "Search engine specific input parameters."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001302"^^xsd:string ; a owl:Class ; rdfs:label "search engine specific input parameter"^^xsd:string ; rdfs:subClassOf obo:MS_1002093 . obo:MS_1001303 obo:IAO_0000115 "Endoproteinase Arg-C."^^xsd:string ; oboInOwl:hasExactSynonym "Clostripain"^^xsd:string, "Trypsin/R"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001303"^^xsd:string ; a owl:Class ; rdfs:label "Arg-C"^^xsd:string ; rdfs:subClassOf obo:MS_1001045, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001272 ] . obo:MS_1001304 obo:IAO_0000115 "Endoproteinase Asp-N."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001304"^^xsd:string ; a owl:Class ; rdfs:label "Asp-N"^^xsd:string ; rdfs:subClassOf obo:MS_1001045, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001273 ] . obo:MS_1001305 obo:IAO_0000115 "Enzyme Asp-N, Ammonium Bicarbonate (AmBic)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001305"^^xsd:string ; a owl:Class ; rdfs:label "Asp-N_ambic"^^xsd:string ; rdfs:subClassOf obo:MS_1001045, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001274 ] . obo:MS_1001306 obo:IAO_0000115 "Enzyme chymotrypsin."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001306"^^xsd:string ; a owl:Class ; rdfs:label "Chymotrypsin"^^xsd:string ; rdfs:subClassOf obo:MS_1001045, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001332 ] . obo:MS_1001307 obo:IAO_0000115 "Cyanogen bromide."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001307"^^xsd:string ; a owl:Class ; rdfs:label "CNBr"^^xsd:string ; rdfs:subClassOf obo:MS_1001045, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001333 ] . obo:MS_1001308 obo:IAO_0000115 "Formic acid."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001308"^^xsd:string ; a owl:Class ; rdfs:label "Formic_acid"^^xsd:string ; rdfs:subClassOf obo:MS_1001045, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001334 ] . obo:MS_1001309 obo:IAO_0000115 "Endoproteinase Lys-C."^^xsd:string ; oboInOwl:hasExactSynonym "Trypsin/K"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001309"^^xsd:string ; a owl:Class ; rdfs:label "Lys-C"^^xsd:string ; rdfs:subClassOf obo:MS_1001045, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001335 ] . obo:MS_1001310 obo:IAO_0000115 "Proteinase Lys-C/P."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001310"^^xsd:string ; a owl:Class ; rdfs:label "Lys-C/P"^^xsd:string ; rdfs:subClassOf obo:MS_1001045, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001336 ] . obo:MS_1001311 obo:IAO_0000115 "PepsinA proteinase."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001311"^^xsd:string ; a owl:Class ; rdfs:label "PepsinA"^^xsd:string ; rdfs:subClassOf obo:MS_1001045, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001337 ] . obo:MS_1001312 obo:IAO_0000115 "Cleavage agent TrypChymo."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001312"^^xsd:string ; a owl:Class ; rdfs:label "TrypChymo"^^xsd:string ; rdfs:subClassOf obo:MS_1001045, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001338 ] . obo:MS_1001313 obo:IAO_0000115 "Cleavage agent Trypsin/P."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001313"^^xsd:string ; a owl:Class ; rdfs:label "Trypsin/P"^^xsd:string ; rdfs:subClassOf obo:MS_1001045, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001339 ] . obo:MS_1001314 obo:IAO_0000115 "Cleavage agent V8-DE."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001314"^^xsd:string ; a owl:Class ; rdfs:label "V8-DE"^^xsd:string ; rdfs:subClassOf obo:MS_1001045, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001340 ] . obo:MS_1001315 obo:IAO_0000115 "Cleavage agent V8-E."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001315"^^xsd:string ; a owl:Class ; rdfs:label "V8-E"^^xsd:string ; rdfs:subClassOf obo:MS_1001045, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001341 ] . obo:MS_1001316 obo:IAO_0000115 "Significance threshold below which the p-value of a peptide match must lie to be considered statistically significant (default 0.05)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001316"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:SigThreshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002095, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001317 obo:IAO_0000115 "The number of protein hits to display in the report. If 'Auto', all protein hits that have a protein score exceeding the average peptide identity threshold are reported. Otherwise an integer at least 1."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001317"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:MaxProteinHits"^^xsd:string ; rdfs:subClassOf obo:MS_1002095, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001318 obo:IAO_0000115 "Mascot protein scoring method; either 'Standard' or 'MudPIT'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001318"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:ProteinScoringMethod"^^xsd:string ; rdfs:subClassOf obo:MS_1002095, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001319 obo:IAO_0000115 "Mascot peptide match ion score threshold. If between 0 and 1, then peptide matches whose expect value exceeds the thresholds are suppressed; if at least 1, then peptide matches whose ion score is below the threshold are suppressed."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001319"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:MinMSMSThreshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002095, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001320 obo:IAO_0000115 "If true, show (sequence or spectrum) same-set proteins. Otherwise they are suppressed."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001320"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:ShowHomologousProteinsWithSamePeptides"^^xsd:string ; rdfs:subClassOf obo:MS_1002095, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001321 obo:IAO_0000115 "If true, show (sequence or spectrum) sub-set and subsumable proteins. Otherwise they are suppressed."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001321"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:ShowHomologousProteinsWithSubsetOfPeptides"^^xsd:string ; rdfs:subClassOf obo:MS_1002095, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001322 obo:IAO_0000115 "Only used in Peptide Summary and Select Summary reports. If true, a peptide match must be 'bold red' to be included in the report; bold red means the peptide is a top ranking match in a query and appears for the first time (in linear order) in the list of protein hits."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001322"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:RequireBoldRed"^^xsd:string ; rdfs:subClassOf obo:MS_1002095, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001323 obo:IAO_0000115 "If true, then the search results are against a nucleic acid database and Unigene clustering is enabled. Otherwise UniGene clustering is not in use."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001323"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:UseUnigeneClustering"^^xsd:string ; rdfs:subClassOf obo:MS_1002095, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001324 obo:IAO_0000115 "If true, then the search results are error tolerant and peptide matches from the second pass are included in search results. Otherwise no error tolerant peptide matches are included."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001324"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:IncludeErrorTolerantMatches"^^xsd:string ; rdfs:subClassOf obo:MS_1002095, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001325 obo:IAO_0000115 "If true, then the search results are against an automatically generated decoy database and the reported peptide matches and protein hits come from the decoy database. Otherwise peptide matches and protein hits come from the original database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001325"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:ShowDecoyMatches"^^xsd:string ; rdfs:subClassOf obo:MS_1002095, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001326 obo:IAO_0000115 "OBSOLETE."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001326"^^xsd:string ; a owl:Class ; rdfs:comment "This former purgatory term was made obsolete."^^xsd:string ; rdfs:label "add_others"^^xsd:string ; owl:deprecated true . obo:MS_1001328 obo:IAO_0000115 "OMSSA E-value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001328"^^xsd:string ; a owl:Class ; rdfs:label "OMSSA:evalue"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001329 obo:IAO_0000115 "OMSSA p-value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001329"^^xsd:string ; a owl:Class ; rdfs:label "OMSSA:pvalue"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001330 obo:IAO_0000115 "The X!Tandem expectation value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001330"^^xsd:string ; a owl:Class ; rdfs:label "X!Tandem:expect"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001331 obo:IAO_0000115 "The X!Tandem hyperscore."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001331"^^xsd:string ; a owl:Class ; rdfs:label "X!Tandem:hyperscore"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001332 obo:IAO_0000115 "Regular expression for Chymotrypsin."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001332"^^xsd:string ; a owl:Class ; rdfs:label "(?<=[FYWL])(?!P)"^^xsd:string ; rdfs:subClassOf obo:MS_1001180 . obo:MS_1001333 obo:IAO_0000115 "Regular expression for CNBr."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001333"^^xsd:string ; a owl:Class ; rdfs:label "(?<=M)"^^xsd:string ; rdfs:subClassOf obo:MS_1001180 . obo:MS_1001334 obo:IAO_0000115 "Regular expression for formic acid."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001334"^^xsd:string ; a owl:Class ; rdfs:label "((?<=D))|((?=D))"^^xsd:string ; rdfs:subClassOf obo:MS_1001180 . obo:MS_1001335 obo:IAO_0000115 "Regular expression for Lys-C."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001335"^^xsd:string ; a owl:Class ; rdfs:label "(?<=K)(?!P)"^^xsd:string ; rdfs:subClassOf obo:MS_1001180 . obo:MS_1001336 obo:IAO_0000115 "Regular expression for Lys-C/P."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001336"^^xsd:string ; a owl:Class ; rdfs:label "(?<=K)"^^xsd:string ; rdfs:subClassOf obo:MS_1001180 . obo:MS_1001337 obo:IAO_0000115 "Regular expression for PepsinA."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001337"^^xsd:string ; a owl:Class ; rdfs:label "(?<=[FL])"^^xsd:string ; rdfs:subClassOf obo:MS_1001180 . obo:MS_1001338 obo:IAO_0000115 "Regular expression for TrypChymo."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001338"^^xsd:string ; a owl:Class ; rdfs:label "(?<=[FYWLKR])(?!P)"^^xsd:string ; rdfs:subClassOf obo:MS_1001180 . obo:MS_1001339 obo:IAO_0000115 "Regular expression for Trypsin/P."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001339"^^xsd:string ; a owl:Class ; rdfs:label "(?<=[KR])"^^xsd:string ; rdfs:subClassOf obo:MS_1001180 . obo:MS_1001340 obo:IAO_0000115 "Regular expression for V8-DE."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001340"^^xsd:string ; a owl:Class ; rdfs:label "(?<=[BDEZ])(?!P)"^^xsd:string ; rdfs:subClassOf obo:MS_1001180 . obo:MS_1001341 obo:IAO_0000115 "Regular expression for V8-E."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001341"^^xsd:string ; a owl:Class ; rdfs:label "(?<=[EZ])(?!P)"^^xsd:string ; rdfs:subClassOf obo:MS_1001180 . obo:MS_1001342 obo:IAO_0000115 "Details about a single database sequence."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001342"^^xsd:string ; a owl:Class ; rdfs:label "database sequence details"^^xsd:string ; rdfs:subClassOf obo:MS_1001011 . obo:MS_1001343 obo:IAO_0000115 "The sequence is a nucleic acid sequence."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001343"^^xsd:string ; a owl:Class ; rdfs:label "NA sequence"^^xsd:string ; rdfs:subClassOf obo:MS_1001342 . obo:MS_1001344 obo:IAO_0000115 "The sequence is a amino acid sequence."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001344"^^xsd:string ; a owl:Class ; rdfs:label "AA sequence"^^xsd:string ; rdfs:subClassOf obo:MS_1001342 . obo:MS_1001345 obo:IAO_0000115 "Children of this term specify the source of the mass table used."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001345"^^xsd:string ; a owl:Class ; rdfs:label "mass table source"^^xsd:string ; rdfs:subClassOf obo:MS_1001354 . obo:MS_1001346 obo:IAO_0000115 "The masses used in the mass table are taken from AAIndex."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001346"^^xsd:string ; a owl:Class ; rdfs:label "AAIndex mass table"^^xsd:string ; rdfs:subClassOf obo:MS_1001345 . obo:MS_1001347 obo:IAO_0000115 "The children of this term define file formats of the sequence database used."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001347"^^xsd:string ; a owl:Class ; rdfs:label "database file formats"^^xsd:string ; rdfs:subClassOf obo:MS_1001011 . obo:MS_1001348 obo:IAO_0000115 "The sequence database was stored in the FASTA format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001348"^^xsd:string ; a owl:Class ; rdfs:label "FASTA format"^^xsd:string ; rdfs:subClassOf obo:MS_1001347 . obo:MS_1001349 obo:IAO_0000115 "The sequence database was stored in the Abstract Syntax Notation 1 format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001349"^^xsd:string ; a owl:Class ; rdfs:label "ASN.1"^^xsd:string ; rdfs:subClassOf obo:MS_1001347 . obo:MS_1001350 obo:IAO_0000115 "The sequence database was stored in the NCBI formatdb (*.p*) format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001350"^^xsd:string ; a owl:Class ; rdfs:label "NCBI *.p*"^^xsd:string ; rdfs:subClassOf obo:MS_1001347 . obo:MS_1001351 obo:IAO_0000115 "ClustalW ALN (multiple alignment) format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001351"^^xsd:string ; a owl:Class ; rdfs:label "clustal aln"^^xsd:string ; rdfs:subClassOf obo:MS_1001347 . obo:MS_1001352 obo:IAO_0000115 "EMBL entry format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001352"^^xsd:string ; a owl:Class ; rdfs:label "embl em"^^xsd:string ; rdfs:subClassOf obo:MS_1001347 . obo:MS_1001353 obo:IAO_0000115 "The NBRF PIR was used as format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001353"^^xsd:string ; a owl:Class ; rdfs:label "NBRF PIR"^^xsd:string ; rdfs:subClassOf obo:MS_1001347 . obo:MS_1001354 obo:IAO_0000115 "Root node for options for the mass table used."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001354"^^xsd:string ; a owl:Class ; rdfs:label "mass table options"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001000 ] . obo:MS_1001355 obo:IAO_0000115 "Descriptions of peptides."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001355"^^xsd:string ; a owl:Class ; rdfs:label "peptide descriptions"^^xsd:string ; rdfs:subClassOf obo:MS_1001105 . obo:MS_1001356 obo:IAO_0000115 "Descriptions of the input spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001356"^^xsd:string ; a owl:Class ; rdfs:label "spectrum descriptions"^^xsd:string ; rdfs:subClassOf obo:MS_1001249 . obo:MS_1001357 obo:IAO_0000115 "Description of the quality of the input spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001357"^^xsd:string ; a owl:Class ; rdfs:label "spectrum quality descriptions"^^xsd:string ; rdfs:subClassOf obo:MS_1001356 . obo:MS_1001358 obo:IAO_0000115 "This term reports the quality of the spectrum assigned by msmsEval."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001358"^^xsd:string ; a owl:Class ; rdfs:label "msmsEval quality"^^xsd:string ; rdfs:subClassOf obo:MS_1001357, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001359 obo:IAO_0000115 "Children of this term describe ambiguous residues."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001359"^^xsd:string ; a owl:Class ; rdfs:label "ambiguous residues"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001000 ] . obo:MS_1001360 obo:IAO_0000115 "List of standard residue one letter codes which are used to replace a non-standard."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001360"^^xsd:string ; a owl:Class ; rdfs:label "alternate single letter codes"^^xsd:string ; rdfs:subClassOf obo:MS_1001359, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001361 obo:IAO_0000115 "List of masses a non-standard letter code is replaced with."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001361"^^xsd:string ; a owl:Class ; rdfs:label "alternate mass"^^xsd:string ; rdfs:subClassOf obo:MS_1001359, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000221 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001362 obo:IAO_0000115 "The number of unmatched peaks."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001362"^^xsd:string ; a owl:Class ; rdfs:label "number of unmatched peaks"^^xsd:string ; rdfs:subClassOf obo:MS_1002345, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_nonNegativeInteger ] . obo:MS_1001363 obo:IAO_0000115 "A peptide matching only one."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001363"^^xsd:string ; a owl:Class ; rdfs:label "peptide unique to one protein"^^xsd:string ; rdfs:subClassOf obo:MS_1001127 . obo:MS_1001364 obo:IAO_0000115 "Estimation of the global false discovery rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001364"^^xsd:string ; a owl:Class ; rdfs:label "peptide sequence-level global FDR"^^xsd:string ; rdfs:subClassOf obo:MS_1002703, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001365 obo:IAO_0000115 "Fragmentation information, type of product: internal yb ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001365"^^xsd:string ; a owl:Class ; rdfs:label "frag: internal yb ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001366 obo:IAO_0000115 "Fragmentation information, type of product: internal ya ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001366"^^xsd:string ; a owl:Class ; rdfs:label "frag: internal ya ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001367 obo:IAO_0000115 "Fragmentation information, type of product: z+1 ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001367"^^xsd:string ; a owl:Class ; rdfs:label "frag: z+1 ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001368 obo:IAO_0000115 "Fragmentation information, type of product: z+2 ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001368"^^xsd:string ; a owl:Class ; rdfs:label "frag: z+2 ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001369 obo:IAO_0000115 "Simple text file format of \"m/z [intensity]\" values for a PMF (or single MS2) search."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001369"^^xsd:string ; a owl:Class ; rdfs:label "text format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1001370 obo:IAO_0000115 "The Mascot result 'homology threshold'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001370"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:homology threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001371 obo:IAO_0000115 "The Mascot result 'identity threshold'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001371"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:identity threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001372 oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001372"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:Sequences"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ] . obo:MS_1001373 obo:IAO_0000115 "SEQUEST total ion current."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001373"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:TIC"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001374 oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001374"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:Sum"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001375 obo:IAO_0000115 "The instrument type parameter value in Phenyx."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001375"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:Instrument Type"^^xsd:string ; rdfs:subClassOf obo:MS_1002097, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001376 obo:IAO_0000115 "The selected scoring model in Phenyx."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001376"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:Scoring Model"^^xsd:string ; rdfs:subClassOf obo:MS_1002097, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001377 obo:IAO_0000115 "The default parent charge value in Phenyx."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001377"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:Default Parent Charge"^^xsd:string ; rdfs:subClassOf obo:MS_1002097, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001378 obo:IAO_0000115 "The parameter in Phenyx that specifies if the experimental charge state is to be considered as correct."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001378"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:Trust Parent Charge"^^xsd:string ; rdfs:subClassOf obo:MS_1002097, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001379 obo:IAO_0000115 "The turbo mode parameter in Phenyx."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001379"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:Turbo"^^xsd:string ; rdfs:subClassOf obo:MS_1002097, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001380 obo:IAO_0000115 "The maximal allowed fragment m/z error filter considered in the turbo mode of Phenyx."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001380"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:Turbo:ErrorTol"^^xsd:string ; rdfs:subClassOf obo:MS_1002097, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001381 obo:IAO_0000115 "The minimal peptide sequence coverage value, expressed in percent, considered in the turbo mode of Phenyx."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001381"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:Turbo:Coverage"^^xsd:string ; rdfs:subClassOf obo:MS_1002097, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001382 obo:IAO_0000115 "The list of ion series considered in the turbo mode of Phenyx."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001382"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:Turbo:Series"^^xsd:string ; rdfs:subClassOf obo:MS_1002097, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001383 obo:IAO_0000115 "The minimal number of residues for a peptide to be considered for a valid identification in Phenyx."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001383"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:MinPepLength"^^xsd:string ; rdfs:subClassOf obo:MS_1002097, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ] . obo:MS_1001384 obo:IAO_0000115 "The minimal peptide z-score for a peptide to be considered for a valid identification in Phenyx."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001384"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:MinPepzscore"^^xsd:string ; rdfs:subClassOf obo:MS_1002097, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001385 obo:IAO_0000115 "The maximal peptide p-value for a peptide to be considered for a valid identification in Phenyx."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001385"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:MaxPepPvalue"^^xsd:string ; rdfs:subClassOf obo:MS_1002097, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001386 obo:IAO_0000115 "The minimal protein score required for a protein database entry to be displayed in the list of identified proteins in Phenyx."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001386"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:AC Score"^^xsd:string ; rdfs:subClassOf obo:MS_1002097, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001387 obo:IAO_0000115 "The parameter in Phenyx that specifies if the conflict resolution algorithm is to be used."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001387"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:Conflict Resolution"^^xsd:string ; rdfs:subClassOf obo:MS_1002097, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001388 obo:IAO_0000115 "The primary sequence database identifier of a protein in Phenyx."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001388"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:AC"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001389 obo:IAO_0000115 "A secondary sequence database identifier of a protein in Phenyx."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001389"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:ID"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001390 obo:IAO_0000115 "The protein score of a protein match in Phenyx."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001390"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:Score"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001391 obo:IAO_0000115 "First number of phenyx result \"#Peptides\"."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001391"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:Peptides1"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ] . obo:MS_1001392 obo:IAO_0000115 "Second number of phenyx result \"#Peptides\"."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001392"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:Peptides2"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ] . obo:MS_1001393 obo:IAO_0000115 "The value of the automatic peptide acceptance filter in Phenyx."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001393"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:Auto"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001394 obo:IAO_0000115 "The value of the user-defined peptide acceptance filter in Phenyx."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001394"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:User"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001395 obo:IAO_0000115 "The z-score value of a peptide sequence match in Phenyx."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001395"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:Pepzscore"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001396 obo:IAO_0000115 "The p-value of a peptide sequence match in Phenyx."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001396"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:PepPvalue"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1002358, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001397 obo:IAO_0000115 "The number of missed cleavages of a peptide sequence in Phenyx."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001397"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:NumberOfMC"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ] . obo:MS_1001398 obo:IAO_0000115 "The expression of the nature and position(s) of modified residue(s) on a matched peptide sequence in Phenyx."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001398"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx:Modif"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001399 obo:IAO_0000115 "Source file for this mzIdentML was in OMSSA csv file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001399"^^xsd:string ; a owl:Class ; rdfs:label "OMSSA csv format"^^xsd:string ; rdfs:subClassOf obo:MS_1001040 . obo:MS_1001400 obo:IAO_0000115 "Source file for this mzIdentML was in OMSSA xml file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001400"^^xsd:string ; a owl:Class ; rdfs:label "OMSSA xml format"^^xsd:string ; rdfs:subClassOf obo:MS_1001040 . obo:MS_1001401 obo:IAO_0000115 "Source file for this mzIdentML was in X!Tandem xml file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001401"^^xsd:string ; a owl:Class ; rdfs:label "X!Tandem xml format"^^xsd:string ; rdfs:subClassOf obo:MS_1001040 . obo:MS_1001405 obo:IAO_0000115 "This subsection describes terms which can describe details of spectrum identification results."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001405"^^xsd:string ; a owl:Class ; rdfs:label "spectrum identification result details"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001000 ] . obo:MS_1001406 obo:IAO_0000115 "Parameter information, type of product: internal yb ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001406"^^xsd:string ; a owl:Class ; rdfs:label "param: internal yb ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002473 . obo:MS_1001407 obo:IAO_0000115 "Parameter information, type of product: internal ya ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001407"^^xsd:string ; a owl:Class ; rdfs:label "param: internal ya ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002473 . obo:MS_1001408 obo:IAO_0000115 "Parameter information, type of product: z+1 ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001408"^^xsd:string ; a owl:Class ; rdfs:label "param: z+1 ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002473 . obo:MS_1001409 obo:IAO_0000115 "Parameter information, type of product: z+2 ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001409"^^xsd:string ; a owl:Class ; rdfs:label "param: z+2 ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002473 . obo:MS_1001410 obo:IAO_0000115 "The translation start codons used to translate the nucleotides to amino acids."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001410"^^xsd:string ; a owl:Class ; rdfs:label "translation start codons"^^xsd:string ; rdfs:subClassOf obo:MS_1001011, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001411 obo:IAO_0000115 "Specification of the search tolerance."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001411"^^xsd:string ; a owl:Class ; rdfs:label "search tolerance specification"^^xsd:string ; rdfs:subClassOf obo:MS_1001249 . obo:MS_1001412 oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001412"^^xsd:string ; a owl:Class ; rdfs:label "search tolerance plus value"^^xsd:string ; rdfs:subClassOf obo:MS_1001411, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000166 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000169 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000187 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000221 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001413 oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001413"^^xsd:string ; a owl:Class ; rdfs:label "search tolerance minus value"^^xsd:string ; rdfs:subClassOf obo:MS_1001411, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000166 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000169 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000187 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000221 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001414 obo:IAO_0000115 "OBSOLETE: replaced by MS:1000797 (peak list scans): This term can hold the scans attribute from an MGF input file."^^xsd:string ; obo:IAO_0100001 "MS:1000797"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001414"^^xsd:string ; a owl:Class ; rdfs:label "MGF scans"^^xsd:string ; rdfs:subClassOf obo:MS_1001405, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001415 obo:IAO_0000115 "OBSOLETE: replaced by MS:1000798 (peak list raw scans): This term can hold the raw scans attribute from an MGF input file."^^xsd:string ; obo:IAO_0100001 "MS:1000798"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001415"^^xsd:string ; a owl:Class ; rdfs:label "MGF raw scans"^^xsd:string ; rdfs:subClassOf obo:MS_1001405, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001416 obo:IAO_0000115 "OBSOLETE: replaced by MS:1000796 (spectrum title): Holds the spectrum title from different input file formats, e.g. MGF TITLE."^^xsd:string ; obo:IAO_0100001 "MS:1000796"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001416"^^xsd:string ; a owl:Class ; rdfs:label "spectrum title"^^xsd:string ; rdfs:subClassOf obo:MS_1001405, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001417 obo:IAO_0000115 "SpectraST dot product of two spectra, measuring spectral similarity."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001417"^^xsd:string ; a owl:Class ; rdfs:label "SpectraST:dot"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001418 obo:IAO_0000115 "SpectraST measure of how much of the dot product is dominated by a few peaks."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001418"^^xsd:string ; a owl:Class ; rdfs:label "SpectraST:dot_bias"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001419 obo:IAO_0000115 "SpectraST spectrum score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001419"^^xsd:string ; a owl:Class ; rdfs:label "SpectraST:discriminant score F"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001420 obo:IAO_0000115 "SpectraST normalised difference between dot product of top hit and runner-up."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001420"^^xsd:string ; a owl:Class ; rdfs:label "SpectraST:delta"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001421 obo:IAO_0000115 "The XML-based pepXML file format for encoding PSM information, created and maintained by the Trans-Proteomic Pipeline developers."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001421"^^xsd:string ; a owl:Class ; rdfs:label "pepXML format"^^xsd:string ; rdfs:subClassOf obo:MS_1001040 . obo:MS_1001422 obo:IAO_0000115 "The XML-based protXML file format for encoding protein identifications, created and maintained by the Trans-Proteomic Pipeline developers."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001422"^^xsd:string ; a owl:Class ; rdfs:label "protXML format"^^xsd:string ; rdfs:subClassOf obo:MS_1001040 . obo:MS_1001423 obo:IAO_0000115 "A URL that describes the translation table used to translate the nucleotides to amino acids."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001423"^^xsd:string ; a owl:Class ; rdfs:label "translation table description"^^xsd:string ; rdfs:subClassOf obo:MS_1001011, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_anyURI ] . obo:MS_1001424 obo:IAO_0000115 "Name of the used method in the ProteinExtractor algorithm."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001424"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:Methodname"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001425 obo:IAO_0000115 "Flag indicating if a non redundant scoring should be generated."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001425"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:GenerateNonRedundant"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001426 obo:IAO_0000115 "Flag indicating if identified proteins should be included."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001426"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:IncludeIdentified"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001427 obo:IAO_0000115 "The maximum number of proteins to consider."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001427"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:MaxNumberOfProteins"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ] . obo:MS_1001428 obo:IAO_0000115 "The maximum considered mass for a protein."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001428"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:MaxProteinMass"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001429 obo:IAO_0000115 "The minimum number of proteins to consider."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001429"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:MinNumberOfPeptides"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ] . obo:MS_1001430 obo:IAO_0000115 "Flag indicating to include Mascot scoring for calculation of the ProteinExtractor meta score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001430"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:UseMascot"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001431 obo:IAO_0000115 "Only peptides with scores higher than that threshold are taken into account in Mascot scoring for calculation of the ProteinExtractor meta score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001431"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:MascotPeptideScoreThreshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001432 obo:IAO_0000115 "In the final result each protein must have at least one peptide above this Mascot score threshold in ProteinExtractor meta score calculation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001432"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:MascotUniqueScore"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001433 oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001433"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:MascotUseIdentityScore"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001434 obo:IAO_0000115 "Influence of Mascot search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001434"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:MascotWeighting"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001435 obo:IAO_0000115 "Flag indicating to include SEQUEST scoring for calculation of the ProteinExtractor meta score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001435"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:UseSequest"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001436 obo:IAO_0000115 "Only peptides with scores higher than that threshold are taken into account in SEQUEST scoring for calculation of the ProteinExtractor meta score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001436"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:SequestPeptideScoreThreshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001437 obo:IAO_0000115 "In the final result each protein must have at least one peptide above this SEQUEST score threshold in ProteinExtractor meta score calculation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001437"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:SequestUniqueScore"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001438 obo:IAO_0000115 "Influence of SEQUEST search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001438"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:SequestWeighting"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001439 obo:IAO_0000115 "Flag indicating to include ProteinSolver scoring for calculation of the ProteinExtractor meta score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001439"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:UseProteinSolver"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001440 obo:IAO_0000115 "Only peptides with scores higher than that threshold are taken into account in ProteinSolver scoring for calculation of the ProteinExtractor meta score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001440"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:ProteinSolverPeptideScoreThreshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001441 obo:IAO_0000115 "In the final result each protein must have at least one peptide above this ProteinSolver score threshold in ProteinExtractor meta score calculation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001441"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:ProteinSolverUniqueScore"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001442 obo:IAO_0000115 "Influence of ProteinSolver search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001442"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:ProteinSolverWeighting"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001443 obo:IAO_0000115 "Flag indicating to include Phenyx scoring for calculation of the ProteinExtractor meta score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001443"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:UsePhenyx"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001444 obo:IAO_0000115 "Only peptides with scores higher than that threshold are taken into account in Phenyx scoring for calculation of the ProteinExtractor meta score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001444"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:PhenyxPeptideScoreThreshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001445 obo:IAO_0000115 "In the final result each protein must have at least one peptide above this Phenyx score threshold in ProteinExtractor meta score calculation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001445"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:PhenyxUniqueScore"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001446 obo:IAO_0000115 "Influence of Phenyx search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001446"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:PhenyxWeighting"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001447 obo:IAO_0000115 "False-discovery rate threshold for proteins."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001447"^^xsd:string ; a owl:Class ; rdfs:label "prot:FDR threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002485, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001448 obo:IAO_0000115 "False-discovery rate threshold for peptides."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001448"^^xsd:string ; a owl:Class ; rdfs:label "pep:FDR threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002484, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001449 obo:IAO_0000115 "Threshold for OMSSA e-value for quality estimation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001449"^^xsd:string ; a owl:Class ; rdfs:label "OMSSA e-value threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002099, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001450 obo:IAO_0000115 "Details of decoy generation and database structure."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001450"^^xsd:string ; a owl:Class ; rdfs:label "decoy DB details"^^xsd:string ; rdfs:subClassOf obo:MS_1001011 . obo:MS_1001451 obo:IAO_0000115 "Name of algorithm used for decoy generation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001451"^^xsd:string ; a owl:Class ; rdfs:label "decoy DB generation algorithm"^^xsd:string ; rdfs:subClassOf obo:MS_1001450, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001452 obo:IAO_0000115 "Decoy type: Amino acids of protein sequences are used in a random order."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001452"^^xsd:string ; a owl:Class ; rdfs:label "decoy DB type shuffle"^^xsd:string ; rdfs:subClassOf obo:MS_1001450 . obo:MS_1001453 obo:IAO_0000115 "Decoy database composition: database contains only decoy entries."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001453"^^xsd:string ; a owl:Class ; rdfs:label "DB composition only decoy"^^xsd:string ; rdfs:subClassOf obo:MS_1001450 . obo:MS_1001454 obo:IAO_0000115 "Decoy entries are generated during the search, not explicitly stored in a database (like Mascot Decoy)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001454"^^xsd:string ; a owl:Class ; rdfs:label "quality estimation with implicite decoy sequences"^^xsd:string ; rdfs:subClassOf obo:MS_1001060 . obo:MS_1001455 obo:IAO_0000115 "Acquisition software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001455"^^xsd:string ; a owl:Class ; rdfs:label "acquisition software"^^xsd:string ; rdfs:subClassOf obo:MS_1000531 . obo:MS_1001456 obo:IAO_0000115 "Analysis software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001456"^^xsd:string ; a owl:Class ; rdfs:label "analysis software"^^xsd:string ; rdfs:subClassOf obo:MS_1000531 . obo:MS_1001457 obo:IAO_0000115 "Data processing software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001457"^^xsd:string ; a owl:Class ; rdfs:label "data processing software"^^xsd:string ; rdfs:subClassOf obo:MS_1000531 . obo:MS_1001458 obo:IAO_0000115 "Vocabularies describing the spectrum generation information."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001458"^^xsd:string ; a owl:Class ; rdfs:label "spectrum generation information"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_0000000 ] . obo:MS_1001459 obo:IAO_0000115 "Format of data files."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001459"^^xsd:string ; a owl:Class ; rdfs:label "file format"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_0000000 ] . obo:MS_1001460 obo:IAO_0000115 "This term should be given if the modification was unknown."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001460"^^xsd:string ; a owl:Class ; rdfs:label "unknown modification"^^xsd:string ; rdfs:subClassOf obo:MS_1001471 . obo:MS_1001461 obo:IAO_0000115 "Greylag identification software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001461"^^xsd:string ; a owl:Class ; rdfs:label "greylag"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1001462 obo:IAO_0000115 "The sequence database was stored in the PEFF (PSI enhanced FastA file) format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001462"^^xsd:string ; a owl:Class ; rdfs:label "PEFF format"^^xsd:string ; rdfs:subClassOf obo:MS_1001347 . obo:MS_1001463 obo:IAO_0000115 "Phenyx open XML file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001463"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx XML format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560, obo:MS_1001040 . obo:MS_1001464 obo:IAO_0000115 "DTASelect file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001464"^^xsd:string ; a owl:Class ; rdfs:label "DTASelect format"^^xsd:string ; rdfs:subClassOf obo:MS_1001040 . obo:MS_1001466 obo:IAO_0000115 "MS2 file format for MS2 spectral data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001466"^^xsd:string ; a owl:Class ; rdfs:label "MS2 format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1001467 obo:IAO_0000115 "This term is used if a NCBI TaxID is specified, e.g. 9606 for Homo sapiens."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001467"^^xsd:string ; a owl:Class ; rdfs:label "taxonomy: NCBI TaxID"^^xsd:string ; rdfs:subClassOf obo:MS_1001089, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ] . obo:MS_1001468 obo:IAO_0000115 "This term is used if a common name is specified, e.g. human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001468"^^xsd:string ; a owl:Class ; rdfs:label "taxonomy: common name"^^xsd:string ; rdfs:subClassOf obo:MS_1001089, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001469 obo:IAO_0000115 "This term is used if a scientific name is specified, e.g. Homo sapiens. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001469"^^xsd:string ; a owl:Class ; rdfs:label "taxonomy: scientific name"^^xsd:string ; rdfs:subClassOf obo:MS_1001089, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001470 obo:IAO_0000115 "This term is used if a swiss prot taxonomy id is specified, e.g. Human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001470"^^xsd:string ; a owl:Class ; rdfs:label "taxonomy: Swiss-Prot ID"^^xsd:string ; rdfs:subClassOf obo:MS_1001089, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001471 obo:IAO_0000115 "The children of this term can be used to describe modifications."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001471"^^xsd:string ; a owl:Class ; rdfs:label "peptide modification details"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001000 ] . obo:MS_1001472 obo:IAO_0000115 "Representation of an array of the measurements of a selectively monitored ion versus time."^^xsd:string ; oboInOwl:hasExactSynonym "SIM chromatogram"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001472"^^xsd:string ; a owl:Class ; rdfs:label "selected ion monitoring chromatogram"^^xsd:string ; rdfs:subClassOf obo:MS_1000810 . obo:MS_1001473 obo:IAO_0000115 "Representation of an array of the measurements of a selectively monitored reaction versus time."^^xsd:string ; oboInOwl:hasExactSynonym "SRM chromatogram"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001473"^^xsd:string ; a owl:Class ; rdfs:label "selected reaction monitoring chromatogram"^^xsd:string ; rdfs:subClassOf obo:MS_1000810 . obo:MS_1001474 obo:IAO_0000115 "OBSOLETE Representation of an array of the measurements of a series of monitored reactions versus time."^^xsd:string ; oboInOwl:hasExactSynonym "CRM chromatogram"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001474"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because, by design, it can't be properly represented in mzML 1.1. CRM experiments must be represented in a spectrum-centric way."^^xsd:string ; rdfs:label "consecutive reaction monitoring chromatogram"^^xsd:string ; rdfs:subClassOf obo:MS_1000810 ; owl:deprecated true . obo:MS_1001475 obo:IAO_0000115 "Open Mass Spectrometry Search Algorithm was used to analyze the spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001475"^^xsd:string ; a owl:Class ; rdfs:label "OMSSA"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1001476 obo:IAO_0000115 "X!Tandem was used to analyze the spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001476"^^xsd:string ; a owl:Class ; rdfs:label "X!Tandem"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1001477 obo:IAO_0000115 "Open-source software for mass spectral library creation and searching, developed at the Institute for Systems Biology and the Hong Kong University of Science and Technology. Part of the Trans-Proteomic Pipeline."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001477"^^xsd:string ; a owl:Class ; rdfs:label "SpectraST"^^xsd:string ; rdfs:subClassOf obo:MS_1001456, obo:MS_1003207 . obo:MS_1001478 obo:IAO_0000115 "Mascot Parser was used to analyze the spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001478"^^xsd:string ; a owl:Class ; rdfs:label "Mascot Parser"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1001479 obo:IAO_0000115 "Sequence of zero or more non-zero ASCII characters terminated by a single null (0) byte."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001479"^^xsd:string ; a owl:Class ; rdfs:label "null-terminated ASCII string"^^xsd:string ; rdfs:subClassOf obo:MS_1000518 . obo:MS_1001480 obo:IAO_0000115 "Native format defined by jobRun=xsd:nonNegativeInteger spotLabel=xsd:string spectrum=xsd:nonNegativeInteger."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001480"^^xsd:string ; a owl:Class ; rdfs:label "SCIEX TOF/TOF nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767 . obo:MS_1001481 obo:IAO_0000115 "Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001481"^^xsd:string ; a owl:Class ; rdfs:label "SCIEX TOF/TOF database"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1001482 obo:IAO_0000115 "SCIEX 5800 TOF-TOF Analyzer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001482"^^xsd:string ; a owl:Class ; rdfs:label "5800 TOF/TOF"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1001483 obo:IAO_0000115 "SCIEX or Applied Biosystems software for TOF/TOF data acquisition and analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001483"^^xsd:string ; a owl:Class ; rdfs:label "SCIEX TOF/TOF Series Explorer Software"^^xsd:string ; rdfs:subClassOf obo:MS_1000690, obo:MS_1001455, obo:MS_1001456, obo:MS_1001457 . obo:MS_1001484 obo:IAO_0000115 "Normalization of data point intensities."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001484"^^xsd:string ; a owl:Class ; rdfs:label "intensity normalization"^^xsd:string ; rdfs:subClassOf obo:MS_1000543 . obo:MS_1001485 obo:IAO_0000115 "Calibration of data point m/z positions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001485"^^xsd:string ; a owl:Class ; rdfs:label "m/z calibration"^^xsd:string ; rdfs:subClassOf obo:MS_1000543 . obo:MS_1001486 obo:IAO_0000115 "Filtering out part of the data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001486"^^xsd:string ; a owl:Class ; rdfs:label "data filtering"^^xsd:string ; rdfs:subClassOf obo:MS_1000543 . obo:MS_1001487 obo:IAO_0000115 "An algorithm for protein determination/assembly integrated into Bruker's ProteinScape."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001487"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor"^^xsd:string ; rdfs:subClassOf obo:MS_1000692, obo:MS_1001456 . obo:MS_1001488 obo:IAO_0000115 "Mascot Distiller."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001488"^^xsd:string ; a owl:Class ; rdfs:label "Mascot Distiller"^^xsd:string ; rdfs:subClassOf obo:MS_1001139, obo:MS_1001456 . obo:MS_1001489 obo:IAO_0000115 "Mascot Integra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001489"^^xsd:string ; a owl:Class ; rdfs:label "Mascot Integra"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1001490 obo:IAO_0000115 "Percolator."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001490"^^xsd:string ; a owl:Class ; rdfs:label "Percolator"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1001491 obo:IAO_0000115 "Percolator:Q value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001491"^^xsd:string ; a owl:Class ; rdfs:label "percolator:Q value"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001492 obo:IAO_0000115 "Percolator:score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001492"^^xsd:string ; a owl:Class ; rdfs:label "percolator:score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001493 obo:IAO_0000115 "Posterior error probability."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001493"^^xsd:string ; a owl:Class ; rdfs:label "percolator:PEP"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001494 obo:IAO_0000115 "In case no threshold was used."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001494"^^xsd:string ; a owl:Class ; rdfs:label "no threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002482 . obo:MS_1001495 obo:IAO_0000115 "The SearchResultId of this peptide as SearchResult in the ProteinScape database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001495"^^xsd:string ; a owl:Class ; rdfs:label "ProteinScape:SearchResultId"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ] . obo:MS_1001496 obo:IAO_0000115 "The SearchEventId of the SearchEvent in the ProteinScape database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001496"^^xsd:string ; a owl:Class ; rdfs:label "ProteinScape:SearchEventId"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ] . obo:MS_1001497 obo:IAO_0000115 "The Profound probability score stored by ProteinScape."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001497"^^xsd:string ; a owl:Class ; rdfs:label "ProteinScape:ProfoundProbability"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001498 obo:IAO_0000115 "The Profound z value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001498"^^xsd:string ; a owl:Class ; rdfs:label "Profound:z value"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001499 obo:IAO_0000115 "The Profound cluster score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001499"^^xsd:string ; a owl:Class ; rdfs:label "Profound:Cluster"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001500 obo:IAO_0000115 "The Profound cluster rank."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001500"^^xsd:string ; a owl:Class ; rdfs:label "Profound:ClusterRank"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ] . obo:MS_1001501 obo:IAO_0000115 "The MSFit Mowse score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001501"^^xsd:string ; a owl:Class ; rdfs:label "MSFit:Mowse score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001502 obo:IAO_0000115 "The Sonar score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001502"^^xsd:string ; a owl:Class ; rdfs:label "Sonar:Score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001503 obo:IAO_0000115 "The ProteinSolver exp value stored by ProteinScape."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001503"^^xsd:string ; a owl:Class ; rdfs:label "ProteinScape:PFFSolverExp"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001504 obo:IAO_0000115 "The ProteinSolver score stored by ProteinScape."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001504"^^xsd:string ; a owl:Class ; rdfs:label "ProteinScape:PFFSolverScore"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001505 obo:IAO_0000115 "The intensity coverage of the identified peaks in the spectrum calculated by ProteinScape."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001505"^^xsd:string ; a owl:Class ; rdfs:label "ProteinScape:IntensityCoverage"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001506 obo:IAO_0000115 "The SEQUEST meta score calculated by ProteinScape from the original SEQUEST scores."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001506"^^xsd:string ; a owl:Class ; rdfs:label "ProteinScape:SequestMetaScore"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001507 obo:IAO_0000115 "The score calculated by ProteinExtractor."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001507"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:Score"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001508 obo:IAO_0000115 "Native format defined by scanId=xsd:nonNegativeInteger."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001508"^^xsd:string ; a owl:Class ; rdfs:label "Agilent MassHunter nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767 . obo:MS_1001509 obo:IAO_0000115 "A data file format found in an Agilent MassHunter directory which contains raw data acquired by an Agilent mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001509"^^xsd:string ; a owl:Class ; rdfs:label "Agilent MassHunter format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1001510 obo:IAO_0000115 "TSQ Vantage."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001510"^^xsd:string ; a owl:Class ; rdfs:label "TSQ Vantage"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1001511 obo:IAO_0000115 "Filter types which are used to filter a sequence database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001511"^^xsd:string ; a owl:Class ; rdfs:label "Sequence database filter types"^^xsd:string ; rdfs:subClassOf obo:MS_1001019 . obo:MS_1001512 obo:IAO_0000115 "Sequence database filters which actually can contains values, e.g. to limit PI value of the sequences used to search."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001512"^^xsd:string ; a owl:Class ; rdfs:label "Sequence database filters"^^xsd:string ; rdfs:subClassOf obo:MS_1001019 . obo:MS_1001513 obo:IAO_0000115 "DB sequence filter pattern."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001513"^^xsd:string ; a owl:Class ; rdfs:label "DB sequence filter pattern"^^xsd:string ; rdfs:subClassOf obo:MS_1001512, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001514 obo:IAO_0000115 "DB accession filter string."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001514"^^xsd:string ; a owl:Class ; rdfs:label "DB accession filter string"^^xsd:string ; rdfs:subClassOf obo:MS_1001512, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001515 obo:IAO_0000115 "Fragmentation information, type of product: c ion without water."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001515"^^xsd:string ; a owl:Class ; rdfs:label "frag: c ion - H2O"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001516 obo:IAO_0000115 "Fragmentation information, type of product: c ion without ammonia."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001516"^^xsd:string ; a owl:Class ; rdfs:label "frag: c ion - NH3"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001517 obo:IAO_0000115 "Fragmentation information, type of product: z ion without water."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001517"^^xsd:string ; a owl:Class ; rdfs:label "frag: z ion - H2O"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001518 obo:IAO_0000115 "Fragmentation information, type of product: z ion without ammonia."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001518"^^xsd:string ; a owl:Class ; rdfs:label "frag: z ion - NH3"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001519 obo:IAO_0000115 "Fragmentation information, type of product: x ion without water."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001519"^^xsd:string ; a owl:Class ; rdfs:label "frag: x ion - H2O"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001520 obo:IAO_0000115 "Fragmentation information, type of product: x ion without ammonia."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001520"^^xsd:string ; a owl:Class ; rdfs:label "frag: x ion - NH3"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001521 obo:IAO_0000115 "Fragmentation information, type of product: precursor ion without water."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001521"^^xsd:string ; a owl:Class ; rdfs:label "frag: precursor ion - H2O"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001522 obo:IAO_0000115 "Fragmentation information, type of product: precursor ion without ammonia."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001522"^^xsd:string ; a owl:Class ; rdfs:label "frag: precursor ion - NH3"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001523 obo:IAO_0000115 "Fragmentation information, type of product: precursor ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001523"^^xsd:string ; a owl:Class ; rdfs:label "frag: precursor ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1001524 obo:IAO_0000115 "This term can describe a neutral loss m/z value that is lost from an ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001524"^^xsd:string ; a owl:Class ; rdfs:label "fragment neutral loss"^^xsd:string ; rdfs:subClassOf obo:MS_1001471, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000221 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001525 obo:IAO_0000115 "This term can describe a neutral loss m/z value that is lost from an ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001525"^^xsd:string ; a owl:Class ; rdfs:label "precursor neutral loss"^^xsd:string ; rdfs:subClassOf obo:MS_1001471, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000221 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001526 obo:IAO_0000115 "Native format defined by databasekey=xsd:long."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001526"^^xsd:string ; a owl:Class ; rdfs:comment "A unique identifier of a spectrum stored in a database (e.g. a PRIMARY KEY identifier)."^^xsd:string ; rdfs:label "spectrum from database integer nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767 . obo:MS_1001527 obo:IAO_0000115 "Spectra from Bruker/Protagen Proteinscape database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001527"^^xsd:string ; a owl:Class ; rdfs:label "Proteinscape spectra"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1001528 obo:IAO_0000115 "Native format defined by query=xsd:nonNegativeInteger."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001528"^^xsd:string ; a owl:Class ; rdfs:comment "The spectrum (query) number in a Mascot results file, starting from 1."^^xsd:string ; rdfs:label "Mascot query number"^^xsd:string ; rdfs:subClassOf obo:MS_1000767, obo:MS_1001405 . obo:MS_1001529 obo:IAO_0000115 "Child-terms contain information to map the results back to spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001529"^^xsd:string ; a owl:Class ; rdfs:label "spectra data details"^^xsd:string ; rdfs:subClassOf obo:MS_1001249 . obo:MS_1001530 obo:IAO_0000115 "Native format defined by mzMLid=xsd:IDREF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001530"^^xsd:string ; a owl:Class ; rdfs:comment "A unique identifier of a spectrum stored in an mzML file."^^xsd:string ; rdfs:label "mzML unique identifier"^^xsd:string ; rdfs:subClassOf obo:MS_1001529 . obo:MS_1001531 obo:IAO_0000115 "Native format defined by databasekey=xsd:long."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001531"^^xsd:string ; a owl:Class ; rdfs:comment "A unique identifier of a spectrum stored in a ProteinScape database."^^xsd:string ; rdfs:label "spectrum from ProteinScape database nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767, obo:MS_1001529 . obo:MS_1001532 obo:IAO_0000115 "Native format defined by databasekey=xsd:string."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001532"^^xsd:string ; a owl:Class ; rdfs:comment "A unique identifier of a spectrum stored in a database (e.g. a PRIMARY KEY identifier)."^^xsd:string ; rdfs:label "spectrum from database string nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767, obo:MS_1001529 . obo:MS_1001533 obo:IAO_0000115 "Bruker Daltonics' esquire series."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001533"^^xsd:string ; a owl:Class ; rdfs:label "Bruker Daltonics esquire series"^^xsd:string ; rdfs:subClassOf obo:MS_1000122 . obo:MS_1001534 obo:IAO_0000115 "Bruker Daltonics' flex series."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001534"^^xsd:string ; a owl:Class ; rdfs:label "Bruker Daltonics flex series"^^xsd:string ; rdfs:subClassOf obo:MS_1000122 . obo:MS_1001535 obo:IAO_0000115 "Bruker Daltonics' BioTOF series."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001535"^^xsd:string ; a owl:Class ; rdfs:label "Bruker Daltonics BioTOF series"^^xsd:string ; rdfs:subClassOf obo:MS_1000122 . obo:MS_1001536 obo:IAO_0000115 "Bruker Daltonics' micrOTOF series."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001536"^^xsd:string ; a owl:Class ; rdfs:label "Bruker Daltonics micrOTOF series"^^xsd:string ; rdfs:subClassOf obo:MS_1000122 . obo:MS_1001537 obo:IAO_0000115 "Bruker Daltonics' BioTOF: ESI TOF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001537"^^xsd:string ; a owl:Class ; rdfs:label "BioTOF"^^xsd:string ; rdfs:subClassOf obo:MS_1001535 . obo:MS_1001538 obo:IAO_0000115 "Bruker Daltonics' BioTOF III: ESI TOF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001538"^^xsd:string ; a owl:Class ; rdfs:label "BioTOF III"^^xsd:string ; rdfs:subClassOf obo:MS_1001535 . obo:MS_1001539 obo:IAO_0000115 "Bruker Daltonics' UltroTOF-Q: ESI Q-TOF (MALDI optional)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001539"^^xsd:string ; a owl:Class ; rdfs:label "UltroTOF-Q"^^xsd:string ; rdfs:subClassOf obo:MS_1001535 . obo:MS_1001540 obo:IAO_0000115 "Bruker Daltonics' micrOTOF II: ESI TOF, Nanospray, APCI, APPI."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001540"^^xsd:string ; a owl:Class ; rdfs:label "micrOTOF II"^^xsd:string ; rdfs:subClassOf obo:MS_1001536 . obo:MS_1001541 obo:IAO_0000115 "Bruker Daltonics' maXis: ESI Q-TOF, Nanospray, APCI, APPI."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001541"^^xsd:string ; a owl:Class ; rdfs:label "maXis"^^xsd:string ; rdfs:subClassOf obo:MS_1001547 . obo:MS_1001542 obo:IAO_0000115 "Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001542"^^xsd:string ; a owl:Class ; rdfs:label "amaZon ETD"^^xsd:string ; rdfs:subClassOf obo:MS_1001545 . obo:MS_1001543 obo:IAO_0000115 "Bruker Daltonics' microflex LRF: MALDI TOF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001543"^^xsd:string ; a owl:Class ; rdfs:label "microflex LRF"^^xsd:string ; rdfs:subClassOf obo:MS_1001534 . obo:MS_1001544 obo:IAO_0000115 "Bruker Daltonics' ultrafleXtreme: MALDI TOF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001544"^^xsd:string ; a owl:Class ; rdfs:label "ultrafleXtreme"^^xsd:string ; rdfs:subClassOf obo:MS_1001534 . obo:MS_1001545 obo:IAO_0000115 "Bruker Daltonics' amaZon series."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001545"^^xsd:string ; a owl:Class ; rdfs:label "Bruker Daltonics amaZon series"^^xsd:string ; rdfs:subClassOf obo:MS_1000122 . obo:MS_1001546 obo:IAO_0000115 "Bruker Daltonics' amaZon X: ESI quadrupole ion trap, APCI, APPI, ETD, PTR."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001546"^^xsd:string ; a owl:Class ; rdfs:label "amaZon X"^^xsd:string ; rdfs:subClassOf obo:MS_1001545 . obo:MS_1001547 obo:IAO_0000115 "Bruker Daltonics' maXis series."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001547"^^xsd:string ; a owl:Class ; rdfs:label "Bruker Daltonics maXis series"^^xsd:string ; rdfs:subClassOf obo:MS_1000122 . obo:MS_1001548 obo:IAO_0000115 "Bruker Daltonics' solarix: ESI quadrupole ion trap, APCI, APPI, ETD, PTR."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001548"^^xsd:string ; a owl:Class ; rdfs:label "Bruker Daltonics solarix series"^^xsd:string ; rdfs:subClassOf obo:MS_1000122 . obo:MS_1001549 obo:IAO_0000115 "Bruker Daltonics' solariX: ESI, MALDI, Qh-FT_ICR."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001549"^^xsd:string ; a owl:Class ; rdfs:label "solariX"^^xsd:string ; rdfs:subClassOf obo:MS_1001548 . obo:MS_1001550 obo:IAO_0000115 "Bruker Daltonics' microflex II: MALDI TOF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001550"^^xsd:string ; a owl:Class ; rdfs:label "microflex II"^^xsd:string ; rdfs:subClassOf obo:MS_1001534 . obo:MS_1001553 obo:IAO_0000115 "Bruker Daltonics' autoflex II TOF/TOF: MALDI TOF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001553"^^xsd:string ; a owl:Class ; rdfs:label "autoflex II TOF/TOF"^^xsd:string ; rdfs:subClassOf obo:MS_1001534 . obo:MS_1001554 obo:IAO_0000115 "Bruker Daltonics' autoflex III TOF/TOF smartbeam: MALDI TOF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001554"^^xsd:string ; a owl:Class ; rdfs:label "autoflex III TOF/TOF smartbeam"^^xsd:string ; rdfs:subClassOf obo:MS_1001534 . obo:MS_1001555 obo:IAO_0000115 "Bruker Daltonics' autoflex: MALDI TOF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001555"^^xsd:string ; a owl:Class ; rdfs:label "autoflex"^^xsd:string ; rdfs:subClassOf obo:MS_1001534 . obo:MS_1001556 obo:IAO_0000115 "Bruker Daltonics' apex series."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001556"^^xsd:string ; a owl:Class ; rdfs:label "Bruker Daltonics apex series"^^xsd:string ; rdfs:subClassOf obo:MS_1000122 . obo:MS_1001557 obo:IAO_0000115 "Shimadzu Corporation software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001557"^^xsd:string ; a owl:Class ; rdfs:label "Shimadzu Corporation software"^^xsd:string ; rdfs:subClassOf obo:MS_1000531 . obo:MS_1001558 obo:IAO_0000115 "Shimadzu Biotech software for data acquisition, processing, and analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001558"^^xsd:string ; a owl:Class ; rdfs:label "MALDI Solutions"^^xsd:string ; rdfs:subClassOf obo:MS_1001455, obo:MS_1001456, obo:MS_1001457, obo:MS_1001557 . obo:MS_1001559 obo:IAO_0000115 "Native format defined by file=xsd:IDREF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001559"^^xsd:string ; a owl:Class ; rdfs:label "SCIEX TOF/TOF T2D nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767 . obo:MS_1001560 obo:IAO_0000115 "Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument export format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001560"^^xsd:string ; a owl:Class ; rdfs:label "SCIEX TOF/TOF T2D format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1001561 obo:IAO_0000115 "Scaffold analysis software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001561"^^xsd:string ; a owl:Class ; rdfs:label "Scaffold"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1001562 obo:IAO_0000115 "Scaffold native ID format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001562"^^xsd:string ; a owl:Class ; rdfs:label "Scaffold nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767 . obo:MS_1001563 obo:IAO_0000115 "Source file for this mzIdentML was in SEQUEST SQT format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001563"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST SQT format"^^xsd:string ; rdfs:subClassOf obo:MS_1001040 . obo:MS_1001564 obo:IAO_0000115 "Source file for this mzIdentML was in Thermo Scientific Discoverer MSF format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001564"^^xsd:string ; a owl:Class ; rdfs:label "Discoverer MSF format"^^xsd:string ; rdfs:subClassOf obo:MS_1001040 . obo:MS_1001565 obo:IAO_0000115 "Source file for this mzIdentML was in Waters IdentityE XML format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001565"^^xsd:string ; a owl:Class ; rdfs:label "IdentityE XML format"^^xsd:string ; rdfs:subClassOf obo:MS_1001040 . obo:MS_1001566 obo:IAO_0000115 "Source file for this mzIdentML was in Waters ProteinLynx XML format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001566"^^xsd:string ; a owl:Class ; rdfs:label "ProteinLynx XML format"^^xsd:string ; rdfs:subClassOf obo:MS_1001040 . obo:MS_1001567 obo:IAO_0000115 "Source file for this mzIdentML was in Agilent SpectrumMill directory format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001567"^^xsd:string ; a owl:Class ; rdfs:label "SpectrumMill directories"^^xsd:string ; rdfs:subClassOf obo:MS_1001040 . obo:MS_1001568 obo:IAO_0000115 "Scaffold peptide probability score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001568"^^xsd:string ; a owl:Class ; rdfs:label "Scaffold:Peptide Probability"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001569 obo:IAO_0000115 "Waters IdentityE peptide score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001569"^^xsd:string ; a owl:Class ; rdfs:label "IdentityE Score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001570 obo:IAO_0000115 "ProteinLynx log likelihood score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001570"^^xsd:string ; a owl:Class ; rdfs:label "ProteinLynx:Log Likelihood"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001571 obo:IAO_0000115 "Waters ProteinLynx Ladder score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001571"^^xsd:string ; a owl:Class ; rdfs:label "ProteinLynx:Ladder Score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001572 obo:IAO_0000115 "Spectrum mill peptide score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001572"^^xsd:string ; a owl:Class ; rdfs:label "SpectrumMill:Score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001573 obo:IAO_0000115 "SpectrumMill SPI score (%)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001573"^^xsd:string ; a owl:Class ; rdfs:label "SpectrumMill:SPI"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001574 obo:IAO_0000115 "Flag indicating to report only the spectra assigned to identified proteins."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001574"^^xsd:string ; a owl:Class ; rdfs:label "report only spectra assigned to identified proteins"^^xsd:string ; rdfs:subClassOf obo:MS_1001060 . obo:MS_1001575 obo:IAO_0000115 "Minimum number of peptides a protein must have to be accepted."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001575"^^xsd:string ; a owl:Class ; rdfs:label "Scaffold: Minimum Peptide Count"^^xsd:string ; rdfs:subClassOf obo:MS_1002106, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ] . obo:MS_1001576 obo:IAO_0000115 "Minimum protein probability a protein must have to be accepted."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001576"^^xsd:string ; a owl:Class ; rdfs:label "Scaffold: Minimum Protein Probability"^^xsd:string ; rdfs:subClassOf obo:MS_1002106, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001577 obo:IAO_0000115 "Minimum probability a peptide must have to be accepted for protein scoring."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001577"^^xsd:string ; a owl:Class ; rdfs:label "Scaffold: Minimum Peptide Probability"^^xsd:string ; rdfs:subClassOf obo:MS_1002106, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001578 obo:IAO_0000115 "Minimum number of enzymatic termini a peptide must have to be accepted."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001578"^^xsd:string ; a owl:Class ; rdfs:label "minimum number of enzymatic termini"^^xsd:string ; rdfs:subClassOf obo:MS_1002094, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_nonNegativeInteger ] . obo:MS_1001579 obo:IAO_0000115 "Scaffold protein probability score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001579"^^xsd:string ; a owl:Class ; rdfs:label "Scaffold:Protein Probability"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001580 obo:IAO_0000115 "Discriminant score from Agilent SpectrumMill software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001580"^^xsd:string ; a owl:Class ; rdfs:label "SpectrumMill:Discriminant Score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001581 obo:IAO_0000115 "The DC potential applied to the asymmetric waveform in FAIMS that compensates for the difference between high and low field mobility of an ion."^^xsd:string ; oboInOwl:hasExactSynonym "FAIMS CV"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001581"^^xsd:string ; a owl:Class ; rdfs:label "FAIMS compensation voltage"^^xsd:string ; rdfs:subClassOf obo:MS_1002892, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000218 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001582 obo:IAO_0000115 "Bioconductor package XCMS for preprocessing high-throughput, untargeted analyte profiling data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001582"^^xsd:string ; a owl:Class ; rdfs:label "XCMS"^^xsd:string ; rdfs:subClassOf obo:MS_1001456, obo:MS_1001457 . obo:MS_1001583 obo:IAO_0000115 "MaxQuant is a quantitative proteomics software package designed for analyzing large mass spectrometric data sets. It is specifically aimed at high resolution MS data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001583"^^xsd:string ; a owl:Class ; rdfs:label "MaxQuant"^^xsd:string ; rdfs:subClassOf obo:MS_1001139, obo:MS_1001456 . obo:MS_1001584 obo:IAO_0000115 "Search that includes data from Peptide Mass Fingerprint (PMF) and MS2 (aka Peptide Fragment Fingerprint - PFF)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001584"^^xsd:string ; a owl:Class ; rdfs:label "combined pmf + ms-ms search"^^xsd:string ; rdfs:subClassOf obo:MS_1001080 . obo:MS_1001585 obo:IAO_0000115 "Tabb Lab software for directly comparing peptides in a database to tandem mass spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001585"^^xsd:string ; a owl:Class ; rdfs:label "MyriMatch"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1001586 obo:IAO_0000115 "Tabb Lab software for generating sequence tags from tandem mass spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001586"^^xsd:string ; a owl:Class ; rdfs:label "DirecTag"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1001587 obo:IAO_0000115 "Tabb Lab software for reconciling sequence tags to a protein database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001587"^^xsd:string ; a owl:Class ; rdfs:label "TagRecon"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1001588 obo:IAO_0000115 "Tabb Lab software for spectral library searches on tandem mass spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001588"^^xsd:string ; a owl:Class ; rdfs:label "Pepitome"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1001589 obo:IAO_0000115 "Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance."^^xsd:string ; oboInOwl:hasExactSynonym "Pepitome:MVH"^^xsd:string, "TagRecon:MVH"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001589"^^xsd:string ; a owl:Class ; rdfs:label "MyriMatch:MVH"^^xsd:string ; rdfs:subClassOf obo:MS_1001143 . obo:MS_1001590 obo:IAO_0000115 "The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution."^^xsd:string ; oboInOwl:hasExactSynonym "Pepitome:mzFidelity"^^xsd:string, "TagRecon:mzFidelity"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001590"^^xsd:string ; a owl:Class ; rdfs:label "MyriMatch:mzFidelity"^^xsd:string ; rdfs:subClassOf obo:MS_1001143 . obo:MS_1001591 obo:IAO_0000115 "A representative protein selected from a set of sequence same-set or spectrum same-set proteins."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001591"^^xsd:string ; a owl:Class ; rdfs:label "anchor protein"^^xsd:string ; rdfs:subClassOf obo:MS_1001101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001592 obo:IAO_0000115 "A protein with significant homology to another protein, but some distinguishing peptide matches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001592"^^xsd:string ; a owl:Class ; rdfs:label "family member protein"^^xsd:string ; rdfs:subClassOf obo:MS_1001101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001593 obo:IAO_0000115 "TO ENDETAIL: a really generic relationship OR ortholog protein."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001593"^^xsd:string ; a owl:Class ; rdfs:label "group member with undefined relationship OR ortholog protein"^^xsd:string ; rdfs:subClassOf obo:MS_1001101 . obo:MS_1001594 obo:IAO_0000115 "A protein which is indistinguishable or equivalent to another protein, having matches to an identical set of peptide sequences."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001594"^^xsd:string ; a owl:Class ; rdfs:label "sequence same-set protein"^^xsd:string ; rdfs:subClassOf obo:MS_1001101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001595 obo:IAO_0000115 "A protein which is indistinguishable or equivalent to another protein, having matches to a set of peptide sequences that cannot be distinguished using the evidence in the mass spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001595"^^xsd:string ; a owl:Class ; rdfs:label "spectrum same-set protein"^^xsd:string ; rdfs:subClassOf obo:MS_1001101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001596 obo:IAO_0000115 "A protein with a sub-set of the peptide sequence matches for another protein, and no distinguishing peptide matches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001596"^^xsd:string ; a owl:Class ; rdfs:label "sequence sub-set protein"^^xsd:string ; rdfs:subClassOf obo:MS_1001101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001597 obo:IAO_0000115 "A protein with a sub-set of the matched spectra for another protein, where the matches cannot be distinguished using the evidence in the mass spectra, and no distinguishing peptide matches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001597"^^xsd:string ; a owl:Class ; rdfs:label "spectrum sub-set protein"^^xsd:string ; rdfs:subClassOf obo:MS_1001101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001598 obo:IAO_0000115 "A sequence same-set or sequence sub-set protein where the matches are distributed across two or more proteins."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001598"^^xsd:string ; a owl:Class ; rdfs:label "sequence subsumable protein"^^xsd:string ; rdfs:subClassOf obo:MS_1001101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001599 obo:IAO_0000115 "A spectrum same-set or spectrum sub-set protein where the matches are distributed across two or more proteins."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001599"^^xsd:string ; a owl:Class ; rdfs:label "spectrum subsumable protein"^^xsd:string ; rdfs:subClassOf obo:MS_1001101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001600 obo:IAO_0000115 "Confidence category of inferred protein (conclusive, non conclusive, ambiguous group or indistinguishable)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001600"^^xsd:string ; a owl:Class ; rdfs:label "protein inference confidence category"^^xsd:string ; rdfs:subClassOf obo:MS_1001101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001601 obo:IAO_0000115 "OBSOLETE Name and location of the .raw file or files."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001601"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use one of the 'mass spectrometer file format' terms (MS:1000560) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Spectrum Files:Raw File names"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001602 obo:IAO_0000115 "OBSOLETE Path and name of the .srf (SEQUEST Result Format) file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001602"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete. Use attribute in mzIdentML / mzQuantML instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:SRF File Selector:SRF File Path"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001603 obo:IAO_0000115 "OBSOLETE Ionization source (electro-, nano-, thermospray, electron impact, APCI, MALDI, FAB etc)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001603"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use one of the 'inlet type' (MS:1000007) or 'ionization type' (MS:1000008) terms instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Spectrum Selector:Ionization Source"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001604 obo:IAO_0000115 "OBSOLETE Fragmentation method used (CID, MPD, ECD, PQD, ETD, HCD, Any)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001604"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use one of the 'ionization type' terms (MS:1000008) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Activation Type"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001605 obo:IAO_0000115 "Lower retention-time limit."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001605"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Spectrum Selector:Lower RT Limit"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001606 obo:IAO_0000115 "OBSOLETE Type of mass spectrometer used (ITMS, FTMS, TOFMS, SQMS, TQMS, SectorMS)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001606"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use mass analyzer type (MS:1000443) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Mass Analyzer"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001607 obo:IAO_0000115 "Maximum mass limit of a singly charged precursor ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001607"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Max Precursor Mass"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001608 obo:IAO_0000115 "Minimum mass limit of a singly charged precursor ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001608"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Min Precursor Mass"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001609 obo:IAO_0000115 "Minimum number of peaks in a tandem mass spectrum that is allowed to pass the filter and to be subjected to further processing in the workflow."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001609"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Spectrum Selector:Minimum Peak Count"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001610 obo:IAO_0000115 "OBSOLETE Level of the mass spectrum (MS2 ... MS10)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001610"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use MS1 spectrum (MS:1000579) or MSn spectrum (MS:1000580) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:MS Order"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001611 obo:IAO_0000115 "OBSOLETE Polarity mode (positive or negative)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001611"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use scan polarity (MS:1000465) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Polarity Mode"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001612 obo:IAO_0000115 "Determines which precursor mass to use for a given MSn scan. This option applies only to higher-order MSn scans (n >= 3)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001612"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Spectrum Selector:Precursor Selection"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001613 obo:IAO_0000115 "Signal-to-Noise ratio below which peaks are removed."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001613"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SN Threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001614 obo:IAO_0000115 "OBSOLETE Scan type for the precursor ion (full, Single Ion Monitoring (SIM), Single Reaction Monitoring (SRM))."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001614"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use MS1 spectrum (MS:1000579), MSn spectrum (MS:1000580), CRM spectrum (MS:1000581), SIM spectrum (MS:1000582) or SRM spectrum (MS:1000583) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Scan Type"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001615 obo:IAO_0000115 "Used to filter out tandem mass spectra that have a total intensity current(sum of the intensities of all peaks in a spectrum) below the specified value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001615"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Spectrum Selector:Total Intensity Threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001616 obo:IAO_0000115 "Specifies the fragmentation method to use in the search algorithm if it is not included in the scan header."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001616"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Spectrum Selector:Unrecognized Activation Type Replacements"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001617 obo:IAO_0000115 "Specifies the charge state of the precursor ions, if it is not defined in the scan header."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001617"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Spectrum Selector:Unrecognized Charge Replacements"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001618 obo:IAO_0000115 "Specifies the mass spectrometer to use to produce the spectra, if it is not included in the scan header."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001618"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Spectrum Selector:Unrecognized Mass Analyzer Replacements"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001619 obo:IAO_0000115 "Specifies the MS scan order used to produce the product spectra, if it is not included in the scan header."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001619"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Spectrum Selector:Unrecognized MS Order Replacements"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001620 obo:IAO_0000115 "Specifies the polarity of the ions monitored if it is not included in the scan header."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001620"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Spectrum Selector:Unrecognized Polarity Replacements"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001621 obo:IAO_0000115 "Upper retention-time limit."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001621"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Spectrum Selector:Upper RT Limit"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001622 obo:IAO_0000115 "Specifies the size of the mass-to-charge ratio (m/z) window in daltons used to remove precursors."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001622"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Non-Fragment Filter:Mass Window Offset"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001623 obo:IAO_0000115 "Maximum allowed mass of a neutral loss."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001623"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Non-Fragment Filter:Maximum Neutral Loss Mass"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001624 obo:IAO_0000115 "Determines whether the charge-reduced precursor peaks found in an ETD or ECD spectrum are removed."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001624"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Non-Fragment Filter:Remove Charge Reduced Precursor"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001625 obo:IAO_0000115 "Determines whether neutral loss peaks are removed from ETD and ECD spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001625"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Non-Fragment Filter:Remove Neutral Loss Peaks"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001626 obo:IAO_0000115 "Determines whether overtone peaks are removed from LTQ FT or LTQ FT Ultra ECD spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001626"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Non-Fragment Filter:Remove Only Known Masses"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001627 obo:IAO_0000115 "Determines whether precursor overtone peaks in the spectrum are removed from the input spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001627"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Overtones"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001628 obo:IAO_0000115 "Determines whether precursor artifact peaks from the MS2 input spectra are removed."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001628"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Peak"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001629 obo:IAO_0000115 "Determines whether the fragment spectrum for scans with the same precursor mass is grouped, regardless of mass analyzer and activation type."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001629"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Spectrum Grouper:Allow Mass Analyzer Mismatch"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001630 obo:IAO_0000115 "Determines whether spectra from different MS order scans can be grouped together."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001630"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Spectrum Grouper:Allow MS Order Mismatch"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001631 obo:IAO_0000115 "OBSOLETE Chromatographic window where precursors to be grouped must reside to be considered the same species."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001631"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use retention time window width (MS:1001907) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Spectrum Grouper:Max RT Difference"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] ; owl:deprecated true . obo:MS_1001632 obo:IAO_0000115 "Groups spectra measured within the given mass and retention-time tolerances into a single spectrum for analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001632"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Spectrum Grouper:Precursor Mass Criterion"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001633 obo:IAO_0000115 "Highest charge state that is allowed for the deconvolution of multiply charged data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001633"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Xtract:Highest Charge"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001634 obo:IAO_0000115 "OBSOLETE Highest mass-to-charge (mz) value for spectral peaks in the measured spectrum that are considered for Xtract."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001634"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use scan window upper limit (MS:1000500) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Xtract:Highest MZ"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] ; owl:deprecated true . obo:MS_1001635 obo:IAO_0000115 "Lowest charge state that is allowed for the deconvolution of multiply charged data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001635"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Xtract:Lowest Charge"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001636 obo:IAO_0000115 "OBSOLETE Lowest mass-to-charge (mz) value for spectral peaks in the measured spectrum that are considered for Xtract."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001636"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use scan window lower limit (MS:1000501) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Xtract:Lowest MZ"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] ; owl:deprecated true . obo:MS_1001637 obo:IAO_0000115 "Determines whether the isotopic pattern, i.e. all isotopes of a mass are removed from the spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001637"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Xtract:Monoisotopic Mass Only"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001638 obo:IAO_0000115 "Fraction of the more abundant peak that an overlapping multiplet must exceed in order to be processed (deconvoluted)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001638"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Xtract:Overlapping Remainder"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001639 obo:IAO_0000115 "Accuracy required for a pattern fit to be considered valid."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001639"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Xtract:Required Fitting Accuracy"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001640 obo:IAO_0000115 "Resolution at mass 400."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001640"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Xtract:Resolution At 400"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001641 obo:IAO_0000115 "Minimum charge state below which peptides are filtered out."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001641"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Lowest Charge State"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001642 obo:IAO_0000115 "Maximum charge above which peptides are filtered out."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001642"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Highest Charge State"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001643 obo:IAO_0000115 "Determines whether spectra with scores above the threshold score are retained rather than filtered out."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001643"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Spectrum Score Filter:Let Pass Above Scores"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001644 obo:IAO_0000115 "Determine dynamic post-translational modifications (PTMs)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001644"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Dynamic Modification"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001645 obo:IAO_0000115 "Static Modification to all occurrences of a named amino acid."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001645"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Static Modification"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001646 obo:IAO_0000115 "OBSOLETE Determines whether the Proteome Discoverer application searches an additional decoy database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001646"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use quality estimation with decoy database (MS:1001194) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Mascot:Decoy Search"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] ; owl:deprecated true . obo:MS_1001647 obo:IAO_0000115 "Determines whether to search error-tolerant."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001647"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Mascot:Error tolerant Search"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001648 obo:IAO_0000115 "Maximum size of the .mgf (Mascot Generic Format) file in MByte."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001648"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Mascot:Max MGF File Size"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001649 obo:IAO_0000115 "URL (Uniform resource Locator) of the Mascot server."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001649"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Mascot:Mascot Server URL"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001650 obo:IAO_0000115 "Number of attempts to submit the Mascot search."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001650"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Mascot:Number of attempts to submit the search"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001651 obo:IAO_0000115 "Number of attempts to submit the Mascot search."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001651"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Mascot:X Static Modification"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001652 obo:IAO_0000115 "OBSOLETE Name of the user submitting the Mascot search."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001652"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use researcher (MS:1001271) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Mascot:User Name"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001653 obo:IAO_0000115 "Time interval between attempts to submit a search in seconds."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001653"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Mascot:Time interval between attempts to submit a search"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001654 obo:IAO_0000115 "OBSOLETE Specifies the enzyme reagent used for protein digestion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001654"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use cleavage agent name (MS:1001045) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Enzyme Name"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001655 obo:IAO_0000115 "OBSOLETE Mass tolerance used for matching fragment peaks in Da or mmu."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001655"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use search tolerance minus value (MS:1001413) or search tolerance plus value (MS:1001412) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Fragment Mass Tolerance"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] ; owl:deprecated true . obo:MS_1001656 obo:IAO_0000115 "Type of instrument used to acquire the data in the raw file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001656"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:Instrument"^^xsd:string ; rdfs:subClassOf obo:MS_1002095, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001657 obo:IAO_0000115 "Maximum number of missed cleavage sites to consider during the digest."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001657"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Maximum Missed Cleavage Sites"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001658 obo:IAO_0000115 "Minimum score in the IonScore column that each peptide must exceed in order to be reported."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001658"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Mascot:Peptide CutOff Score"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001659 obo:IAO_0000115 "OBSOLETE Mass window for which precursor ions are considered to be the same species."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001659"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use search tolerance minus value (MS:1001413) or search tolerance plus value (MS:1001412) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Precursor Mass Tolerance"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] ; owl:deprecated true . obo:MS_1001660 obo:IAO_0000115 "Minimum protein score in the IonScore column that each protein must exceed in order to be reported."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001660"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Mascot:Protein CutOff Score"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001661 obo:IAO_0000115 "OBSOLETE Database to use in the search (configured on the Mascot server)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001661"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use database name (MS:1001013) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Protein Database"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001662 obo:IAO_0000115 "Specifies a factor that is used in calculating a threshold that determines whether a protein appears in the results report."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001662"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Mascot:Protein Relevance Factor"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001663 obo:IAO_0000115 "Specifies the relaxed target false discovery rate (FDR, 0.0 - 1.0) for peptide hits with moderate confidence."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001663"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Target FDR Relaxed"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001664 obo:IAO_0000115 "Specifies the strict target false discovery rate (FDR, 0.0 - 1.0) for peptide hits with high confidence."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001664"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Target FDR Strict"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001665 obo:IAO_0000115 "OBSOLETE Limits searches to entries from a particular species or group of species."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001665"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use taxonomy: scientific name (MS:1001469) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Mascot:Taxonomy"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001666 obo:IAO_0000115 "OBSOLETE Use average mass for the precursor."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001666"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use parent mass type average (MS:1001212) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Use Average Precursor Mass"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] ; owl:deprecated true . obo:MS_1001667 obo:IAO_0000115 "OBSOLETE Determines whether to use MudPIT or normal scoring."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001667"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use Mascot:ProteinScoringMethod (MS:1001318) instead."^^xsd:string ; rdfs:label "Mascot:use MudPIT scoring"^^xsd:string ; rdfs:subClassOf obo:MS_1002095, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] ; owl:deprecated true . obo:MS_1001668 obo:IAO_0000115 "Minimum cross-correlation threshold that determines whether peptides in an .srf file are imported."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001668"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Absolute XCorr Threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001669 obo:IAO_0000115 "Determines whether to calculate a probability score for every peptide match."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001669"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Calculate Probability Score"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001670 obo:IAO_0000115 "Dynamic C-terminal modification that is used during the search."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001670"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:CTerminal Modification"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001671 obo:IAO_0000115 "Percentage of the theoretical ions that must be found in order for a peptide to be scored and retained."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001671"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Fragment Ion Cutoff Percentage"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001672 obo:IAO_0000115 "Maximum number of identical modifications that a single peptide can have."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001672"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Max Identical Modifications Per Peptide"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001673 obo:IAO_0000115 "Maximum number of different modifications that a peptide can have, e.g. because of steric hindrance."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001673"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Max Modifications Per Peptide"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001674 obo:IAO_0000115 "Maximum number of peptides that are searched and scored per spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001674"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Maximum Peptides Considered"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001675 obo:IAO_0000115 "Maximum number of peptide matches reported per spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001675"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Maximum Peptides Output"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001676 obo:IAO_0000115 "Maximum number of proteins that a single identified peptide can be associated with during protein assembly."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001676"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Maximum Protein References Per Peptide"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001677 obo:IAO_0000115 "Dynamic N-terminal modification that is used during the search."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001677"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:NTerminal Modification"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001678 obo:IAO_0000115 "Static modification for the C terminal of the peptide used during the search."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001678"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Peptide CTerminus"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001679 obo:IAO_0000115 "Static modification for the N terminal of the peptide used during the search."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001679"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Peptide NTerminus"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001680 obo:IAO_0000115 "Specifies a factor to apply to the protein score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001680"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Peptide Relevance Factor"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001681 obo:IAO_0000115 "Specifies a peptide threshold that determines whether the protein that it is a part of is scored and retained in the report."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001681"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Protein Relevance Threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001682 obo:IAO_0000115 "OBSOLETE Determines whether the Proteome Discoverer application searches against a decoy database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001682"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use quality estimation with decoy database (MS:1001194) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Search Against Decoy Database"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] ; owl:deprecated true . obo:MS_1001683 obo:IAO_0000115 "Use average masses for the fragments."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001683"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Use Average Fragment Masses"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001684 obo:IAO_0000115 "Determines whether a ions with neutral loss are used for spectrum matching."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001684"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Use Neutral Loss a Ions"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001685 obo:IAO_0000115 "Determines whether b ions with neutral loss are used for spectrum matching."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001685"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Use Neutral Loss b Ions"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001686 obo:IAO_0000115 "Determines whether y ions with neutral loss are used for spectrum matching."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001686"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Use Neutral Loss y Ions"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001687 obo:IAO_0000115 "Determines whether z ions with neutral loss are used for spectrum matching."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001687"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Use Neutral Loss z Ions"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001688 obo:IAO_0000115 "Uses a ions for spectrum matching with this relative factor."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001688"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Weight of a Ions"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001689 obo:IAO_0000115 "Uses b ions for spectrum matching with this relative factor."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001689"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Weight of b Ions"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001690 obo:IAO_0000115 "Uses c ions for spectrum matching with this relative factor."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001690"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Weight of c Ions"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001691 obo:IAO_0000115 "Uses c ions for spectrum matching with this relative factor."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001691"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Weight of d Ions"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001692 obo:IAO_0000115 "Uses c ions for spectrum matching with this relative factor."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001692"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Weight of v Ions"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001693 obo:IAO_0000115 "Uses c ions for spectrum matching with this relative factor."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001693"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Weight of w Ions"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001694 obo:IAO_0000115 "Uses x ions for spectrum matching with this relative factor."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001694"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Weight of x Ions"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001695 obo:IAO_0000115 "Uses y ions for spectrum matching with this relative factor."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001695"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Weight of y Ions"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001696 obo:IAO_0000115 "Uses z ions for spectrum matching with this relative factor."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001696"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Weight of z Ions"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001697 obo:IAO_0000115 "Sets a minimum protein score that each protein must exceed in order to be reported."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001697"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:ZCore:Protein Score Cutoff"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001698 obo:IAO_0000115 "Specifies which peak to select if more than one peak is found inside the integration window."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001698"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Reporter Ions Quantizer:Integration Method"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001699 obo:IAO_0000115 "Specifies the mass-to-charge window that enables one to look for the reporter peaks."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001699"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Reporter Ions Quantizer:Integration Window Tolerance"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001700 obo:IAO_0000115 "Quantitation method for isobarically labeled quantitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001700"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Reporter Ions Quantizer:Quantitation Method"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001701 obo:IAO_0000115 "OBSOLETE Format of the exported spectra (dta, mgf or mzData)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001701"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use one of the 'mass spectrometer file format' terms (MS:1000560) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Spectrum Exporter:Export Format"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001702 obo:IAO_0000115 "Name of the output file that contains the exported data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001702"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Spectrum Exporter:File name"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001703 obo:IAO_0000115 "Influences the modifications search."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001703"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Search Modifications Only For Identified Proteins"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001704 obo:IAO_0000115 "Standard high confidence XCorr parameter for charge = 1."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001704"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge1"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001705 obo:IAO_0000115 "Standard high confidence XCorr parameter for charge = 2."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001705"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge2"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001706 obo:IAO_0000115 "Standard high confidence XCorr parameter for charge = 3."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001706"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge3"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001707 obo:IAO_0000115 "Standard high confidence XCorr parameter for charge >= 4."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001707"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge4"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001708 obo:IAO_0000115 "Standard medium confidence XCorr parameter for charge = 1."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001708"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge1"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001709 obo:IAO_0000115 "Standard medium confidence XCorr parameter for charge = 2."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001709"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge2"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001710 obo:IAO_0000115 "Standard medium confidence XCorr parameter for charge = 3."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001710"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge3"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001711 obo:IAO_0000115 "Standard medium confidence XCorr parameter for charge >= 4."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001711"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge4"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001712 obo:IAO_0000115 "FT high confidence XCorr parameter for charge = 1."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001712"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge1"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001713 obo:IAO_0000115 "FT high confidence XCorr parameter for charge = 2."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001713"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge2"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001714 obo:IAO_0000115 "FT high confidence XCorr parameter for charge = 3."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001714"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge3"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001715 obo:IAO_0000115 "FT high confidence XCorr parameter for charge >= 4."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001715"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge4"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001716 obo:IAO_0000115 "FT medium confidence XCorr parameter for charge = 1."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001716"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge1"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001717 obo:IAO_0000115 "FT medium confidence XCorr parameter for charge = 2."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001717"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge2"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001718 obo:IAO_0000115 "FT medium confidence XCorr parameter for charge = 3."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001718"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge3"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001719 obo:IAO_0000115 "FT medium confidence XCorr parameter for charge >= 4."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001719"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge4"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001720 obo:IAO_0000115 "OBSOLETE ProteomeDiscoverer's 1st dynamic post-translational modification (PTM) input parameter."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001720"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:1. Dynamic Modification"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001721 obo:IAO_0000115 "OBSOLETE ProteomeDiscoverer's 2nd dynamic post-translational modification (PTM) input parameter."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001721"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:2. Dynamic Modification"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001722 obo:IAO_0000115 "OBSOLETE ProteomeDiscoverer's 3rd dynamic post-translational modification (PTM) input parameter."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001722"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:3. Dynamic Modification"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001723 obo:IAO_0000115 "OBSOLETE ProteomeDiscoverer's 4th dynamic post-translational modification (PTM) input parameter."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001723"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:4. Dynamic Modification"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001724 obo:IAO_0000115 "Static Modification for X."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001724"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Static Modification for X"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001725 obo:IAO_0000115 "Minimal initial peptide probability to contribute to analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001725"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Initial minimal peptide probability"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001726 obo:IAO_0000115 "Minimum adjusted peptide probability contributing to protein probability."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001726"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Minimal peptide probability"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001727 obo:IAO_0000115 "Minimum peptide weight contributing to protein probability."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001727"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Minimal peptide weight"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001728 obo:IAO_0000115 "Number of spectra from 1+ precursor ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001728"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Number of input1 spectra"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001729 obo:IAO_0000115 "Number of spectra from 2+ precursor ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001729"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Number of input2 spectra"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001730 obo:IAO_0000115 "Number of spectra from 3+ precursor ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001730"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Number of input3 spectra"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001731 obo:IAO_0000115 "Number of spectra from 4+ precursor ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001731"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Number of input4 spectra"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001732 obo:IAO_0000115 "Number of spectra from 5+ precursor ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001732"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Number of input5 spectra"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001733 obo:IAO_0000115 "Total number of predicted correct protein ids (sum of probabilities)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001733"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Number of predicted correct proteins"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001734 obo:IAO_0000115 "OBSOLETE Sample organism (used for annotation purposes)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001734"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use taxonomy: scientific name (MS:1001469) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Organism"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001735 obo:IAO_0000115 "OBSOLETE Full path database name."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001735"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete. Use attribute in mzIdentML / mzQuantML instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Reference Database"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001736 obo:IAO_0000115 "Residues considered equivalent when comparing peptides."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001736"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Residue substitution list"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001737 obo:IAO_0000115 "OBSOLETE File type (if not pepXML)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001737"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use mass spectrometer file format (MS:1000560) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Source file extension"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001738 obo:IAO_0000115 "OBSOLETE Input pepXML files."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001738"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use pepXML file (MS:1001421) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Source Files"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001739 obo:IAO_0000115 "OBSOLETE Input pepXML files (old)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001739"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use pepXML file (MS:1001421) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:Source Files old"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1001740 obo:IAO_0000115 "Windows full path for database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001740"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:WinCyg reference database"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001741 obo:IAO_0000115 "Windows pepXML file names."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001741"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:WinCyg source files"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001742 obo:IAO_0000115 "Finnigan LTQ Orbitrap Velos MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001742"^^xsd:string ; a owl:Class ; rdfs:label "LTQ Orbitrap Velos"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1001743 obo:IAO_0000115 "Determines if to use A ions for spectrum matching."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001743"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Mascot:Weight of A Ions"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001744 obo:IAO_0000115 "Determines if to use B ions for spectrum matching."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001744"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Mascot:Weight of B Ions"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001745 obo:IAO_0000115 "Determines if to use C ions for spectrum matching."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001745"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Mascot:Weight of C Ions"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001746 obo:IAO_0000115 "Determines if to use D ions for spectrum matching."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001746"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Mascot:Weight of D Ions"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001747 obo:IAO_0000115 "Determines if to use V ions for spectrum matching."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001747"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Mascot:Weight of V Ions"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001748 obo:IAO_0000115 "Determines if to use W ions for spectrum matching."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001748"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Mascot:Weight of W Ions"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001749 obo:IAO_0000115 "Determines if to use X ions for spectrum matching."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001749"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Mascot:Weight of X Ions"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001750 obo:IAO_0000115 "Determines if to use Y ions for spectrum matching."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001750"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Mascot:Weight of Y Ions"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001751 obo:IAO_0000115 "Determines if to use z ions for spectrum matching."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001751"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Mascot:Weight of Z Ions"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001752 obo:IAO_0000115 "Determines if to use precursor reevaluation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001752"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Spectrum Selector:Use New Precursor Reevaluation"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001753 obo:IAO_0000115 "Signal-to-Noise ratio below which peaks are removed (in FT mode only)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001753"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Spectrum Selector:SN Threshold FTonly"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001754 obo:IAO_0000115 "Unknown Mascot parameter which ProteomeDiscoverer uses for mascot searches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001754"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Mascot:Please Do not Touch this"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001755 obo:IAO_0000115 "Phone number of the contact person or organization."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001755"^^xsd:string ; a owl:Class ; rdfs:label "contact phone number"^^xsd:string ; rdfs:subClassOf obo:MS_1000585, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001756 obo:IAO_0000115 "Fax number for the contact person or organization."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001756"^^xsd:string ; a owl:Class ; rdfs:label "contact fax number"^^xsd:string ; rdfs:subClassOf obo:MS_1000585, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001757 obo:IAO_0000115 "Toll-free phone number of the contact person or organization."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001757"^^xsd:string ; a owl:Class ; rdfs:label "contact toll-free phone number"^^xsd:string ; rdfs:subClassOf obo:MS_1000585, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001758 obo:IAO_0000115 "Significance threshold type used in Mascot reporting (either 'identity' or 'homology')."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001758"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:SigThresholdType"^^xsd:string ; rdfs:subClassOf obo:MS_1002095, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001759 obo:IAO_0000115 "Strategy used by Mascot to group proteins with same peptide matches (one of 'none', 'Occam's razor' or 'family clustering')."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001759"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:ProteinGrouping"^^xsd:string ; rdfs:subClassOf obo:MS_1002095, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001760 obo:IAO_0000115 "List of Percolator features that were used in processing the peptide matches. Typical Percolator features are 'retentionTime', 'dM', 'mScore', 'lgDScore', 'mrCalc', 'charge' and 'dMppm'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001760"^^xsd:string ; a owl:Class ; rdfs:label "Percolator:features"^^xsd:string ; rdfs:subClassOf obo:MS_1002107, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001761 obo:IAO_0000115 "Waters LC-system ACQUITY UPLC."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001761"^^xsd:string ; a owl:Class ; rdfs:label "ACQUITY UPLC"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001762 obo:IAO_0000115 "Waters LC-system ACQUITY UPLC H-Class."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001762"^^xsd:string ; a owl:Class ; rdfs:label "ACQUITY UPLC H-Class"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001763 obo:IAO_0000115 "Waters LC-system ACQUITY UPLC H-Class Bio."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001763"^^xsd:string ; a owl:Class ; rdfs:label "ACQUITY UPLC H-Class Bio"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001764 obo:IAO_0000115 "Waters LC-system ACQUITY UPLC I-Class."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001764"^^xsd:string ; a owl:Class ; rdfs:label "ACQUITY UPLC I-Class"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001765 obo:IAO_0000115 "Waters LC-system ACQUITY UPLC Systems with 2D Technology."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001765"^^xsd:string ; a owl:Class ; rdfs:label "ACQUITY UPLC Systems with 2D Technology"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001766 obo:IAO_0000115 "Waters LC-system nanoACQUITY UPLC."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001766"^^xsd:string ; a owl:Class ; rdfs:label "nanoACQUITY UPLC"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001767 obo:IAO_0000115 "Waters LC-system nanoACQUITY UPLC System with 1D Technology."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001767"^^xsd:string ; a owl:Class ; rdfs:label "nanoACQUITY UPLC System with 1D Technology"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001768 obo:IAO_0000115 "Waters LC-system nanoACQUITY UPLC with HDX Technology."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001768"^^xsd:string ; a owl:Class ; rdfs:label "nanoACQUITY UPLC with HDX Technology"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001769 obo:IAO_0000115 "Waters LC-system TRIZAIC UPLC nanoTile."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001769"^^xsd:string ; a owl:Class ; rdfs:label "TRIZAIC UPLC nanoTile"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001770 obo:IAO_0000115 "Waters oa-ToF based GCT Premier."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001770"^^xsd:string ; a owl:Class ; rdfs:label "GCT Premier"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001771 obo:IAO_0000115 "Waters oa-ToF based MALDI Synapt G2 HDMS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001771"^^xsd:string ; a owl:Class ; rdfs:label "MALDI Synapt G2 HDMS"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001772 obo:IAO_0000115 "Waters oa-ToF based MALDI Synapt G2 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001772"^^xsd:string ; a owl:Class ; rdfs:label "MALDI Synapt G2 MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001773 obo:IAO_0000115 "Waters oa-ToF based MALDI Synapt G2 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001773"^^xsd:string ; a owl:Class ; rdfs:label "MALDI Synapt G2-S HDMS"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001774 obo:IAO_0000115 "Waters oa-ToF based MALDI Synapt G2-S MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001774"^^xsd:string ; a owl:Class ; rdfs:label "MALDI Synapt G2-S MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001775 obo:IAO_0000115 "Waters oa-ToF based MALDI Synapt HDMS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001775"^^xsd:string ; a owl:Class ; rdfs:label "MALDI Synapt HDMS"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001776 obo:IAO_0000115 "Waters oa-ToF based MALDI Synapt MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001776"^^xsd:string ; a owl:Class ; rdfs:label "MALDI Synapt MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001777 obo:IAO_0000115 "Waters oa-ToF based Synapt G2 HDMS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001777"^^xsd:string ; a owl:Class ; rdfs:label "Synapt G2 HDMS"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001778 obo:IAO_0000115 "Waters oa-ToF based Synapt G2 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001778"^^xsd:string ; a owl:Class ; rdfs:label "Synapt G2 MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001779 obo:IAO_0000115 "Waters oa-ToF based Synapt G2-S HDMS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001779"^^xsd:string ; a owl:Class ; rdfs:label "Synapt G2-S HDMS"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001780 obo:IAO_0000115 "Waters oa-ToF based Synapt G2-S MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001780"^^xsd:string ; a owl:Class ; rdfs:label "Synapt G2-S MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001781 obo:IAO_0000115 "Waters oa-ToF based Synapt HDMS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001781"^^xsd:string ; a owl:Class ; rdfs:label "Synapt HDMS"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001782 obo:IAO_0000115 "Waters oa-ToF based Synapt MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001782"^^xsd:string ; a owl:Class ; rdfs:label "Synapt MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001783 obo:IAO_0000115 "Waters oa-ToF based Xevo G2 Q-Tof."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001783"^^xsd:string ; a owl:Class ; rdfs:label "Xevo G2 Q-Tof"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001784 obo:IAO_0000115 "Waters oa-ToF based Xevo G2 Tof."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001784"^^xsd:string ; a owl:Class ; rdfs:label "Xevo G2 Tof"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001785 obo:IAO_0000115 "Waters oa-ToF based Xevo Q-Tof."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001785"^^xsd:string ; a owl:Class ; rdfs:label "Xevo Q-Tof"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001786 obo:IAO_0000115 "Waters quadrupole based 3100."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001786"^^xsd:string ; a owl:Class ; rdfs:label "3100"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001787 obo:IAO_0000115 "Waters quadrupole based Acquity SQD."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001787"^^xsd:string ; a owl:Class ; rdfs:label "Acquity SQD"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001788 obo:IAO_0000115 "Waters quadrupole based Acquity TQD."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001788"^^xsd:string ; a owl:Class ; rdfs:label "Acquity TQD"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001789 obo:IAO_0000115 "Waters (triple) quadrupole based Quattro micro GC."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001789"^^xsd:string ; a owl:Class ; rdfs:label "Quattro micro GC"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001790 obo:IAO_0000115 "Waters quadrupole based Xevo TQ MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001790"^^xsd:string ; a owl:Class ; rdfs:label "Xevo TQ MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001791 obo:IAO_0000115 "Waters quadrupole based Xevo TQD."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001791"^^xsd:string ; a owl:Class ; rdfs:label "Xevo TQD"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001792 obo:IAO_0000115 "Waters quadrupole based Xevo TQ-S."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001792"^^xsd:string ; a owl:Class ; rdfs:label "Xevo TQ-S"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1001793 obo:IAO_0000115 "NCBI TaxID taxonomy ID to prefer when two or more proteins match the same set of peptides or when protein entry in database represents multiple sequences."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001793"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:PreferredTaxonomy"^^xsd:string ; rdfs:subClassOf obo:MS_1002095, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001795 obo:IAO_0000115 "Waters Empower software for liquid chromatography and mass spectrometry acquisition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001795"^^xsd:string ; a owl:Class ; rdfs:label "Empower"^^xsd:string ; rdfs:subClassOf obo:MS_1000694, obo:MS_1001456, obo:MS_1001457 . obo:MS_1001796 obo:IAO_0000115 "Waters UNIFY software for liquid chromatography and mass spectrometry acquisition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001796"^^xsd:string ; a owl:Class ; rdfs:label "UNIFY"^^xsd:string ; rdfs:subClassOf obo:MS_1000694, obo:MS_1001456, obo:MS_1001457 . obo:MS_1001797 obo:IAO_0000115 "OBSOLETE An ion mobility mass spectrometry technique based on the superimposition of travelling voltage waves on a radially-confining RF voltage in a gas-filled, stacked-ring ion guide."^^xsd:string ; oboInOwl:hasExactSynonym "TWIMS"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001797"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion mobility spectrometry was made obsolete."^^xsd:string ; rdfs:label "travelling wave ion mobility mass spectrometer"^^xsd:string ; owl:deprecated true . obo:MS_1001798 obo:IAO_0000115 "LECO software for data acquisition and analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001798"^^xsd:string ; a owl:Class ; rdfs:label "LECO software"^^xsd:string ; rdfs:subClassOf obo:MS_1000531 . obo:MS_1001799 obo:IAO_0000115 "Software for acquisition, processing and analysis of data for LECO instruments."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001799"^^xsd:string ; a owl:Class ; rdfs:label "ChromaTOF software"^^xsd:string ; rdfs:subClassOf obo:MS_1001455, obo:MS_1001456, obo:MS_1001457, obo:MS_1001798 . obo:MS_1001800 obo:IAO_0000115 "LECO instrument model."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001800"^^xsd:string ; a owl:Class ; rdfs:label "LECO instrument model"^^xsd:string ; rdfs:subClassOf obo:MS_1000031 . obo:MS_1001801 obo:IAO_0000115 "LECO high resolution time-of-flight GC mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001801"^^xsd:string ; a owl:Class ; rdfs:label "Pegasus HRT"^^xsd:string ; rdfs:subClassOf obo:MS_1001800 . obo:MS_1001802 obo:IAO_0000115 "LECO high resolution time-of-flight LC mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001802"^^xsd:string ; a owl:Class ; rdfs:label "Citius HRT"^^xsd:string ; rdfs:subClassOf obo:MS_1001800 . obo:MS_1001803 obo:IAO_0000115 "LECO GC time-of-flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001803"^^xsd:string ; a owl:Class ; rdfs:label "Pegasus"^^xsd:string ; rdfs:subClassOf obo:MS_1001800 . obo:MS_1001804 obo:IAO_0000115 "LECO bench-top GC time-of-flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001804"^^xsd:string ; a owl:Class ; rdfs:label "TruTOF"^^xsd:string ; rdfs:subClassOf obo:MS_1001800 . obo:MS_1001805 obo:IAO_0000115 "The data type of the value reported in a QuantLayer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001805"^^xsd:string ; a owl:Class ; rdfs:label "quantification datatype"^^xsd:string ; rdfs:subClassOf obo:MS_1001129 . obo:MS_1001806 obo:IAO_0000115 "Attributes describing the details of an object relevant for reporting quantification workflows or values."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001806"^^xsd:string ; a owl:Class ; rdfs:label "quantification object attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1001129 . obo:MS_1001807 obo:IAO_0000115 "Attribute describing a study variable."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001807"^^xsd:string ; a owl:Class ; rdfs:label "study variable attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1001806 . obo:MS_1001808 obo:IAO_0000115 "The study variable is 'technical replicate'. The string value denotes the category of technical replicate, e.g. 'run generated from same sample'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001808"^^xsd:string ; a owl:Class ; rdfs:label "technical replicate"^^xsd:string ; rdfs:subClassOf obo:MS_1001807, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001809 obo:IAO_0000115 "The study variable is 'biological replicate'. This means, the run was generated from another individual or sample."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001809"^^xsd:string ; a owl:Class ; rdfs:label "biological replicate"^^xsd:string ; rdfs:subClassOf obo:MS_1001807 . obo:MS_1001810 obo:IAO_0000115 "The experimental condition is 'case' in contrast to 'control'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001810"^^xsd:string ; a owl:Class ; rdfs:label "experimental condition 'case'"^^xsd:string ; rdfs:subClassOf obo:MS_1001807 . obo:MS_1001811 obo:IAO_0000115 "The experimental condition is 'control' in contrast to 'case'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001811"^^xsd:string ; a owl:Class ; rdfs:label "experimental condition 'control'"^^xsd:string ; rdfs:subClassOf obo:MS_1001807 . obo:MS_1001812 obo:IAO_0000115 "The experimental condition is 'disease' in contrast to 'healthy'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001812"^^xsd:string ; a owl:Class ; rdfs:label "experimental condition 'disease'"^^xsd:string ; rdfs:subClassOf obo:MS_1001807 . obo:MS_1001813 obo:IAO_0000115 "The experimental condition is 'healthy' in contrast to 'disease'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001813"^^xsd:string ; a owl:Class ; rdfs:label "experimental condition 'healthy'"^^xsd:string ; rdfs:subClassOf obo:MS_1001807 . obo:MS_1001814 obo:IAO_0000115 "The experimental condition is given in the value of this term."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001814"^^xsd:string ; a owl:Class ; rdfs:label "generic experimental condition"^^xsd:string ; rdfs:subClassOf obo:MS_1001807, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001815 obo:IAO_0000115 "The experimental design followed a time series design. The time point of this run is given in the value of this term."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001815"^^xsd:string ; a owl:Class ; rdfs:label "time series, time point X"^^xsd:string ; rdfs:subClassOf obo:MS_1001807, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001816 obo:IAO_0000115 "The experimental design followed a dilution series design. The concentration of this run is given in the value of this term."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001816"^^xsd:string ; a owl:Class ; rdfs:label "dilution series, concentration X"^^xsd:string ; rdfs:subClassOf obo:MS_1001807, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001817 obo:IAO_0000115 "Attribute describing a raw file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001817"^^xsd:string ; a owl:Class ; rdfs:label "raw file attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1001806 . obo:MS_1001818 obo:IAO_0000115 "The raw file contains the run of one sample (e.g. spectral counting, LC-MS label-free)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001818"^^xsd:string ; a owl:Class ; rdfs:label "one sample run"^^xsd:string ; rdfs:subClassOf obo:MS_1001817 . obo:MS_1001819 obo:IAO_0000115 "The raw file contains the run of two samples (e.g. SILAC, metabolic labelling)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001819"^^xsd:string ; a owl:Class ; rdfs:label "two sample run"^^xsd:string ; rdfs:subClassOf obo:MS_1001817 . obo:MS_1001820 obo:IAO_0000115 "The raw file contains the run of three samples (e.g. 3-plex SILAC)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001820"^^xsd:string ; a owl:Class ; rdfs:label "three sample run"^^xsd:string ; rdfs:subClassOf obo:MS_1001817 . obo:MS_1001821 obo:IAO_0000115 "The raw file contains the run of four samples (e.g. 4-plex iTraq)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001821"^^xsd:string ; a owl:Class ; rdfs:label "four sample run"^^xsd:string ; rdfs:subClassOf obo:MS_1001817 . obo:MS_1001822 obo:IAO_0000115 "The raw file contains the run of eight samples (e.g. 8-plex iTraq)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001822"^^xsd:string ; a owl:Class ; rdfs:label "eight sample run"^^xsd:string ; rdfs:subClassOf obo:MS_1001817 . obo:MS_1001823 obo:IAO_0000115 "Attribute describing, how raw files build a raw file group."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001823"^^xsd:string ; a owl:Class ; rdfs:label "raw files group attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1001806 . obo:MS_1001824 obo:IAO_0000115 "Attribute describing, how raw files build a raw file group."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001824"^^xsd:string ; a owl:Class ; rdfs:label "merge of runs of 1D gel bands"^^xsd:string ; rdfs:subClassOf obo:MS_1001823 . obo:MS_1001825 obo:IAO_0000115 "Attribute describing a feature list."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001825"^^xsd:string ; a owl:Class ; rdfs:label "feature list attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1001806 . obo:MS_1001826 obo:IAO_0000115 "The mass trace of the features of this feature list specifies rectangles. Each mass trace has the syntax (RT_start,MZ_start,RT_end,MZ_end), i.e. opposite corners are given."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001826"^^xsd:string ; a owl:Class ; rdfs:label "mass trace reporting: rectangles"^^xsd:string ; rdfs:subClassOf obo:MS_1001825 . obo:MS_1001827 obo:IAO_0000115 "The mass trace of the features of this feature list specifies polygons. Each mass trace has the syntax (RT_1, MZ_1, RT_2, MZ_2, ... , RT_i, MZ_i, ... , RT_n, MZ_n), where the line (RT_n, MZ_n)->(RT_1, MZ_1) is implicit."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001827"^^xsd:string ; a owl:Class ; rdfs:label "mass trace reporting: polygons"^^xsd:string ; rdfs:subClassOf obo:MS_1001825 . obo:MS_1001828 obo:IAO_0000115 "Attribute describing a feature."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001828"^^xsd:string ; a owl:Class ; rdfs:label "feature attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1001806 . obo:MS_1001829 obo:IAO_0000115 "Identifier for an SRM transition in an external document describing additional information about the transition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001829"^^xsd:string ; a owl:Class ; rdfs:label "SRM transition ID"^^xsd:string ; rdfs:subClassOf obo:MS_1001828, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001830 obo:IAO_0000115 "Software from Nonlinear Dynamics for LC-MS label-free workflow."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001830"^^xsd:string ; a owl:Class ; rdfs:label "Progenesis LC-MS"^^xsd:string ; rdfs:subClassOf obo:MS_1001139 . obo:MS_1001831 obo:IAO_0000115 "Software for SILAC workflow."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001831"^^xsd:string ; a owl:Class ; rdfs:label "SILACAnalyzer"^^xsd:string ; rdfs:subClassOf obo:MS_1000752, obo:MS_1001139 . obo:MS_1001832 obo:IAO_0000115 "Quantitation software comment or any customizations to the default setup of the software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001832"^^xsd:string ; a owl:Class ; rdfs:label "quantitation software comment or customizations"^^xsd:string ; rdfs:subClassOf obo:MS_1001129, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001833 obo:IAO_0000115 "The overall workflow of this quantitation report."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001833"^^xsd:string ; a owl:Class ; rdfs:label "quantitation analysis summary"^^xsd:string ; rdfs:subClassOf obo:MS_1001129 . obo:MS_1001834 obo:IAO_0000115 "LC-MS label-free workflow (RT m/z map)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001834"^^xsd:string ; a owl:Class ; rdfs:label "LC-MS label-free quantitation analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1001833 . obo:MS_1001835 obo:IAO_0000115 "SILAC workflow (heavy, light, and sometimes medium peak)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001835"^^xsd:string ; a owl:Class ; rdfs:label "SILAC quantitation analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1001833 . obo:MS_1001836 obo:IAO_0000115 "Spectral counting workflow (number of identified MS2 spectra as approximation of peptide / protein quant)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001836"^^xsd:string ; a owl:Class ; rdfs:label "spectral counting quantitation analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1001833 . obo:MS_1001837 obo:IAO_0000115 "Quantification analysis using the SCIEX amine-reactive isobaric tags for relative and absolute quantification (iTRAQ) labelling workflow, wherein 2-8 reporter ions are measured in MS2 spectra near in the 114-121 m/z range."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001837"^^xsd:string ; a owl:Class ; rdfs:label "iTRAQ quantitation analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1002009 . obo:MS_1001838 obo:IAO_0000115 "Selected Reaction Monitoring workflow (XIC quantitation of precursor / fragment mass pair)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001838"^^xsd:string ; a owl:Class ; rdfs:label "SRM quantitation analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1001833 . obo:MS_1001839 obo:IAO_0000115 "Metabolic labeling workflow (heavy and light versions of peptides, depending on number of nitrogens)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001839"^^xsd:string ; a owl:Class ; rdfs:label "metabolic labeling 14N / 15N quantitation analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1001833 . obo:MS_1001840 obo:IAO_0000115 "Maximum peak intensity of the LC-MS feature."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001840"^^xsd:string ; a owl:Class ; rdfs:label "LC-MS feature intensity"^^xsd:string ; rdfs:subClassOf obo:MS_1002735, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001841 obo:IAO_0000115 "Real (intensity times area) volume of the LC-MS feature."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001841"^^xsd:string ; a owl:Class ; rdfs:label "LC-MS feature volume"^^xsd:string ; rdfs:subClassOf obo:MS_1002735, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001842 obo:IAO_0000115 "The number of MS2 spectra identified for a raw peptide sequence without PTMs and charge state in spectral counting."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001842"^^xsd:string ; a owl:Class ; rdfs:label "sequence-level spectral count"^^xsd:string ; rdfs:subClassOf obo:MS_1002737, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001843 obo:IAO_0000115 "Maximum intensity of MS1 feature."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001843"^^xsd:string ; a owl:Class ; rdfs:label "MS1 feature maximum intensity"^^xsd:string ; rdfs:subClassOf obo:MS_1002735, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001844 obo:IAO_0000115 "Area of MS1 feature."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001844"^^xsd:string ; a owl:Class ; rdfs:label "MS1 feature area"^^xsd:string ; rdfs:subClassOf obo:MS_1002735, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001845 obo:IAO_0000115 "OBSOLETE Area of MS1 peak (e.g. SILAC, 15N)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001845"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was a duplication of MS:1001844."^^xsd:string ; rdfs:label "peak area"^^xsd:string ; rdfs:subClassOf obo:MS_1001805, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] ; owl:deprecated true . obo:MS_1001846 obo:IAO_0000115 "Area of all peaks belonging to the isotopic pattern of light or heavy peak (e.g. 15N)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001846"^^xsd:string ; a owl:Class ; rdfs:label "isotopic pattern area"^^xsd:string ; rdfs:subClassOf obo:MS_1001805, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001847 obo:IAO_0000115 "Intensity of MS2 reporter ion (e.g. iTraq)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001847"^^xsd:string ; a owl:Class ; rdfs:label "reporter ion intensity"^^xsd:string ; rdfs:subClassOf obo:MS_1001805, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001848 obo:IAO_0000115 "Simple ratio of two values (enumerator and denominator)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001848"^^xsd:string ; a owl:Class ; rdfs:label "simple ratio of two values"^^xsd:string ; rdfs:subClassOf obo:MS_1002066 . obo:MS_1001849 obo:IAO_0000115 "OBSOLETE Peptide quantification value calculated as sum of MatchedFeature quantification values."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001849"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because the concept MatchedFeature was dropped."^^xsd:string ; rdfs:label "sum of MatchedFeature values"^^xsd:string ; rdfs:subClassOf obo:MS_1002735, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] ; owl:deprecated true . obo:MS_1001850 obo:IAO_0000115 "Normalized peptide value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001850"^^xsd:string ; a owl:Class ; rdfs:label "normalized peptide value"^^xsd:string ; rdfs:subClassOf obo:MS_1002737, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001851 obo:IAO_0000115 "Protein quantification value calculated as sum of peptide values."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001851"^^xsd:string ; a owl:Class ; rdfs:label "protein value: sum of peptide values"^^xsd:string ; rdfs:subClassOf obo:MS_1002738, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001852 obo:IAO_0000115 "Normalized protein value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001852"^^xsd:string ; a owl:Class ; rdfs:label "normalized protein value"^^xsd:string ; rdfs:subClassOf obo:MS_1002738, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001853 obo:IAO_0000115 "Global datatype: Maximum of all pair-wise fold changes of group means (e.g. Progenesis)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001853"^^xsd:string ; a owl:Class ; rdfs:label "max fold change"^^xsd:string ; rdfs:subClassOf obo:MS_1001805, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001854 obo:IAO_0000115 "Global datatype: p-value of ANOVA of group means (e.g. Progenesis)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001854"^^xsd:string ; a owl:Class ; rdfs:label "ANOVA p-value"^^xsd:string ; rdfs:subClassOf obo:MS_1002072, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001855 obo:IAO_0000115 "P-value of t-Test of two groups."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001855"^^xsd:string ; a owl:Class ; rdfs:label "t-test p-value"^^xsd:string ; rdfs:subClassOf obo:MS_1002072, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001856 obo:IAO_0000115 "Intensity (or area) of MS2 reporter ion (e.g. iTraq)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001856"^^xsd:string ; a owl:Class ; rdfs:label "reporter ion raw value"^^xsd:string ; rdfs:subClassOf obo:MS_1001805, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001857 obo:IAO_0000115 "Normalized value of MS2 reporter ion (e.g. iTraq)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001857"^^xsd:string ; a owl:Class ; rdfs:label "reporter ion normalized value"^^xsd:string ; rdfs:subClassOf obo:MS_1001805, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001858 obo:IAO_0000115 "Area of the extracted ion chromatogram (e.g. of a transition in SRM)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001858"^^xsd:string ; a owl:Class ; rdfs:label "XIC area"^^xsd:string ; rdfs:subClassOf obo:MS_1001805, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001859 obo:IAO_0000115 "Normalized area of the extracted ion chromatogram (e.g. of a transition in SRM)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001859"^^xsd:string ; a owl:Class ; rdfs:label "normalized XIC area"^^xsd:string ; rdfs:subClassOf obo:MS_1001805, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001860 obo:IAO_0000115 "Protein quantification value calculated as mean of peptide ratios."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001860"^^xsd:string ; a owl:Class ; rdfs:label "protein value: mean of peptide ratios"^^xsd:string ; rdfs:subClassOf obo:MS_1002738, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001861 obo:IAO_0000115 "Terms used to describe types of quantification data processing."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001861"^^xsd:string ; a owl:Class ; rdfs:label "quantification data processing"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001000 ] . obo:MS_1001862 obo:IAO_0000115 "Normalization of protein values to the mean of the sum of all protein PSM counts (e.g. spectral counting)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001862"^^xsd:string ; a owl:Class ; rdfs:label "normalization to mean of sum of all proteins"^^xsd:string ; rdfs:subClassOf obo:MS_1001861 . obo:MS_1001863 obo:IAO_0000115 "Normalization of protein values to approach the same distribution."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001863"^^xsd:string ; a owl:Class ; rdfs:label "quantile normalization, proteins"^^xsd:string ; rdfs:subClassOf obo:MS_1001861 . obo:MS_1001864 obo:IAO_0000115 "Normalization of peptide values to approach the same distribution."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001864"^^xsd:string ; a owl:Class ; rdfs:label "quantile normalization, peptides"^^xsd:string ; rdfs:subClassOf obo:MS_1001861 . obo:MS_1001865 obo:IAO_0000115 "Automatic RT alignment of Progenesis software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001865"^^xsd:string ; a owl:Class ; rdfs:label "Progenesis automatic alignment"^^xsd:string ; rdfs:subClassOf obo:MS_1001861 . obo:MS_1001866 obo:IAO_0000115 "RT alignment of Progenesis software using automatic and manual vectors."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001866"^^xsd:string ; a owl:Class ; rdfs:label "Progenesis manual alignment"^^xsd:string ; rdfs:subClassOf obo:MS_1001861 . obo:MS_1001867 obo:IAO_0000115 "Normalization as performed by Progenesis LC-MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001867"^^xsd:string ; a owl:Class ; rdfs:label "Progenesis normalization"^^xsd:string ; rdfs:subClassOf obo:MS_1001861 . obo:MS_1001868 obo:IAO_0000115 "Estimation of the q-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs, possibly with different mass modifications, mapping to the same sequence have been collapsed to one entry)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001868"^^xsd:string ; a owl:Class ; rdfs:label "distinct peptide-level q-value"^^xsd:string ; rdfs:subClassOf obo:MS_1002484, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001869 obo:IAO_0000115 "Estimation of the q-value for proteins."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001869"^^xsd:string ; a owl:Class ; rdfs:label "protein-level q-value"^^xsd:string ; rdfs:subClassOf obo:MS_1001116, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001870 obo:IAO_0000115 "Estimation of the p-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001870"^^xsd:string ; a owl:Class ; rdfs:label "peptide sequence-level p-value"^^xsd:string ; rdfs:subClassOf obo:MS_1001092, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001871 obo:IAO_0000115 "Estimation of the p-value for proteins."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001871"^^xsd:string ; a owl:Class ; rdfs:label "protein-level p-value"^^xsd:string ; rdfs:subClassOf obo:MS_1001116, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001872 obo:IAO_0000115 "Estimation of the e-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001872"^^xsd:string ; a owl:Class ; rdfs:label "peptide sequence-level e-value"^^xsd:string ; rdfs:subClassOf obo:MS_1001092, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002306 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001873 obo:IAO_0000115 "Estimation of the e-value for proteins."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001873"^^xsd:string ; a owl:Class ; rdfs:label "protein-level e-value"^^xsd:string ; rdfs:subClassOf obo:MS_1001116, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002306 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001874 obo:IAO_0000115 "OBSOLETE A smoothing of the distribution of q-values calculated for PSMs from individual search engines, such that ordering of result quality is maintained and all FDRScore values are guaranteed to have a value > 0."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001874"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was split into the more specific terms for PSM-level FDRScore (1002355), distinct peptide-level FDRScore (MS:1002360), protein-level FDRScore (MS:1002365) and protein group-level FDRScore (MS:1002374)."^^xsd:string ; rdfs:label "FDRScore"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1001153, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] ; owl:deprecated true . obo:MS_1001875 obo:IAO_0000115 "The regular expression describing the sequence motif for a modification."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001875"^^xsd:string ; a owl:Class ; rdfs:label "modification motif"^^xsd:string ; rdfs:subClassOf obo:MS_1001056, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001876 obo:IAO_0000115 "The a priori probability of a modification."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001876"^^xsd:string ; a owl:Class ; rdfs:label "modification probability"^^xsd:string ; rdfs:subClassOf obo:MS_1001056 . obo:MS_1001877 obo:IAO_0000115 "Software for acquisition, processing and analysis of data for LECO instruments."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001877"^^xsd:string ; a owl:Class ; rdfs:label "ChromaTOF HRT software"^^xsd:string ; rdfs:subClassOf obo:MS_1001455, obo:MS_1001456, obo:MS_1001457, obo:MS_1001798 . obo:MS_1001878 obo:IAO_0000115 "Shimadzu Biotech software for data acquisition, processing, and analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001878"^^xsd:string ; a owl:Class ; rdfs:label "MALDI Solutions Microbial Identification"^^xsd:string ; rdfs:subClassOf obo:MS_1001558 . obo:MS_1001879 obo:IAO_0000115 "The potential difference between two adjacent interface voltages affecting in-source collision induced dissociation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001879"^^xsd:string ; a owl:Class ; rdfs:label "offset voltage"^^xsd:string ; rdfs:subClassOf obo:MS_1000482, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000218 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001880 obo:IAO_0000115 "The dissociation of an ion as a result of collisional excitation during ion transfer from an atmospheric pressure ion source and the mass spectrometer vacuum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001880"^^xsd:string ; a owl:Class ; rdfs:label "in-source collision-induced dissociation"^^xsd:string ; rdfs:subClassOf obo:MS_1000044 . obo:MS_1001881 obo:IAO_0000115 "mz5 file format, modelled after mzML."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001881"^^xsd:string ; a owl:Class ; rdfs:label "mz5 format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1001882 obo:IAO_0000115 "Attributes of the quality of a transition that affect its selection as appropriate."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001882"^^xsd:string ; a owl:Class ; rdfs:label "transition validation attribute"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000908 ] . obo:MS_1001883 obo:IAO_0000115 "Variation of a set of signal measurements calculated as the standard deviation relative to the mean."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001883"^^xsd:string ; a owl:Class ; rdfs:label "coefficient of variation"^^xsd:string ; rdfs:subClassOf obo:MS_1001882, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001884 obo:IAO_0000115 "Unitless number providing the ratio of the total measured intensity of a signal relative to the estimated noise level for that signal."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001884"^^xsd:string ; a owl:Class ; rdfs:label "signal-to-noise ratio"^^xsd:string ; rdfs:subClassOf obo:MS_1001882, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001885 obo:IAO_0000115 "Parameters string passed to a command-line interface software application, omitting the executable name."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001885"^^xsd:string ; a owl:Class ; rdfs:label "command-line parameters"^^xsd:string ; rdfs:subClassOf obo:MS_1000630, obo:MS_1003201, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001886 obo:IAO_0000115 "Software for data analysis of peptides and proteins."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001886"^^xsd:string ; a owl:Class ; rdfs:label "SQID"^^xsd:string ; rdfs:subClassOf obo:MS_1001456, obo:MS_1001457 . obo:MS_1001887 obo:IAO_0000115 "The SQID result 'Score'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001887"^^xsd:string ; a owl:Class ; rdfs:label "SQID:score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143 . obo:MS_1001888 obo:IAO_0000115 "The SQID result 'deltaScore'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001888"^^xsd:string ; a owl:Class ; rdfs:label "SQID:deltaScore"^^xsd:string ; rdfs:subClassOf obo:MS_1001143 . obo:MS_1001889 obo:IAO_0000115 "The SQID result 'protein score'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001889"^^xsd:string ; a owl:Class ; rdfs:label "SQID:protein score"^^xsd:string ; rdfs:subClassOf obo:MS_1002363 . obo:MS_1001890 obo:IAO_0000115 "The data type normalised abundance for proteins produced by Progenesis LC-MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001890"^^xsd:string ; a owl:Class ; rdfs:label "Progenesis:protein normalised abundance"^^xsd:string ; rdfs:subClassOf obo:MS_1002738, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001891 obo:IAO_0000115 "The data type normalised abundance for peptides produced by Progenesis LC-MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001891"^^xsd:string ; a owl:Class ; rdfs:label "Progenesis:peptide normalised abundance"^^xsd:string ; rdfs:subClassOf obo:MS_1002737, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001892 obo:IAO_0000115 "The data type raw abundance for proteins produced by Progenesis LC-MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001892"^^xsd:string ; a owl:Class ; rdfs:label "Progenesis:protein raw abundance"^^xsd:string ; rdfs:subClassOf obo:MS_1002738, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001893 obo:IAO_0000115 "The data type raw abundance for peptide produced by Progenesis LC-MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001893"^^xsd:string ; a owl:Class ; rdfs:label "Progenesis:peptide raw abundance"^^xsd:string ; rdfs:subClassOf obo:MS_1002737, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001894 obo:IAO_0000115 "The data type confidence score produced by Progenesis LC-MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001894"^^xsd:string ; a owl:Class ; rdfs:label "Progenesis:confidence score"^^xsd:string ; rdfs:subClassOf obo:MS_1001805, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001895 obo:IAO_0000115 "The data type peptide count produced by Progenesis LC-MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001895"^^xsd:string ; a owl:Class ; rdfs:label "Progenesis:peptide count"^^xsd:string ; rdfs:subClassOf obo:MS_1002737, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001896 obo:IAO_0000115 "The data type feature intensity produced by Progenesis LC-MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001896"^^xsd:string ; a owl:Class ; rdfs:label "Progenesis:feature intensity"^^xsd:string ; rdfs:subClassOf obo:MS_1002735, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001897 obo:IAO_0000115 "The data type peptide counts (unique) produced by MaxQuant."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001897"^^xsd:string ; a owl:Class ; rdfs:label "MaxQuant:peptide counts (unique)"^^xsd:string ; rdfs:subClassOf obo:MS_1002737, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001898 obo:IAO_0000115 "The data type peptide counts (all) produced by MaxQuant."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001898"^^xsd:string ; a owl:Class ; rdfs:label "MaxQuant:peptide counts (all)"^^xsd:string ; rdfs:subClassOf obo:MS_1002737, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001899 obo:IAO_0000115 "The data type peptide counts (razor+unique) produced by MaxQuant."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001899"^^xsd:string ; a owl:Class ; rdfs:label "MaxQuant:peptide counts (razor+unique)"^^xsd:string ; rdfs:subClassOf obo:MS_1002737, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001900 obo:IAO_0000115 "The data type sequence length produced by MaxQuant."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001900"^^xsd:string ; a owl:Class ; rdfs:label "MaxQuant:sequence length"^^xsd:string ; rdfs:subClassOf obo:MS_1002737, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001901 obo:IAO_0000115 "The data type PEP (posterior error probability) produced by MaxQuant."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001901"^^xsd:string ; a owl:Class ; rdfs:label "MaxQuant:PEP"^^xsd:string ; rdfs:subClassOf obo:MS_1001805, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001902 obo:IAO_0000115 "The data type LFQ intensity produced by MaxQuant."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001902"^^xsd:string ; a owl:Class ; rdfs:label "MaxQuant:LFQ intensity"^^xsd:string ; rdfs:subClassOf obo:MS_1001805, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001903 obo:IAO_0000115 "The data type feature intensity produced by MaxQuant."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001903"^^xsd:string ; a owl:Class ; rdfs:label "MaxQuant:feature intensity"^^xsd:string ; rdfs:subClassOf obo:MS_1002735, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001904 obo:IAO_0000115 "The data type MS2 count produced by MaxQuant."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001904"^^xsd:string ; a owl:Class ; rdfs:label "MaxQuant:MS/MS count"^^xsd:string ; rdfs:subClassOf obo:MS_1001805, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1001905 obo:IAO_0000115 "The emPAI value of protein abundance, produced from the emPAI algorithm."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001905"^^xsd:string ; a owl:Class ; rdfs:label "emPAI value"^^xsd:string ; rdfs:subClassOf obo:MS_1002738, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001906 obo:IAO_0000115 "The APEX value of protein abundance, produced from the APEX software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001906"^^xsd:string ; a owl:Class ; rdfs:label "APEX value"^^xsd:string ; rdfs:subClassOf obo:MS_1002738, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001907 obo:IAO_0000115 "The full width of a retention time window for a chromatographic peak."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001907"^^xsd:string ; a owl:Class ; rdfs:label "retention time window width"^^xsd:string ; rdfs:subClassOf obo:MS_1000915, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000031 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001908 obo:IAO_0000115 "Thermo Scientific ISQ single quadrupole MS with the ExtractraBrite source."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001908"^^xsd:string ; a owl:Class ; rdfs:label "ISQ"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1001909 obo:IAO_0000115 "Thermo Scientific second generation Velos."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001909"^^xsd:string ; a owl:Class ; rdfs:label "Velos Plus"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1001910 obo:IAO_0000115 "Thermo Scientific LTQ Orbitrap Elite, often just referred to as the Orbitrap Elite."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001910"^^xsd:string ; a owl:Class ; rdfs:label "LTQ Orbitrap Elite"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1001911 obo:IAO_0000115 "Thermo Scientific Q Exactive."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001911"^^xsd:string ; a owl:Class ; rdfs:label "Q Exactive"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1001912 obo:IAO_0000115 "Thermo Scientific PinPoint SRM analysis software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001912"^^xsd:string ; a owl:Class ; rdfs:label "PinPoint"^^xsd:string ; rdfs:subClassOf obo:MS_1000693, obo:MS_1001456, obo:MS_1001457 . obo:MS_1001913 obo:IAO_0000115 "Potential difference setting of the Thermo Scientific S-lens stacked-ring ion guide in volts."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001913"^^xsd:string ; a owl:Class ; rdfs:label "S-lens voltage"^^xsd:string ; rdfs:subClassOf obo:MS_1000482, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000218 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001914 obo:IAO_0000115 "Python module to interface mzML Data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001914"^^xsd:string ; a owl:Class ; rdfs:label "pymzML"^^xsd:string ; rdfs:subClassOf obo:MS_1001457 . obo:MS_1001915 obo:IAO_0000115 "Enzyme leukocyte elastase (EC 3.4.21.37)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001915"^^xsd:string ; a owl:Class ; rdfs:label "leukocyte elastase"^^xsd:string ; rdfs:subClassOf obo:MS_1001045, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001957 ] . obo:MS_1001916 obo:IAO_0000115 "Enzyme proline endopeptidase (EC 3.4.21.26)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001916"^^xsd:string ; a owl:Class ; rdfs:label "proline endopeptidase"^^xsd:string ; rdfs:subClassOf obo:MS_1001045, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001958 ] . obo:MS_1001917 obo:IAO_0000115 "Enzyme glutamyl endopeptidase (EC 3.4.21.19)."^^xsd:string ; oboInOwl:hasExactSynonym "Glu-C"^^xsd:string, "staphylococcal protease"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001917"^^xsd:string ; a owl:Class ; rdfs:label "glutamyl endopeptidase"^^xsd:string ; rdfs:subClassOf obo:MS_1001045, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001959 ] . obo:MS_1001918 obo:IAO_0000115 "Chemical iodobenzoate. Cleaves after W."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001918"^^xsd:string ; a owl:Class ; rdfs:label "2-iodobenzoate"^^xsd:string ; rdfs:subClassOf obo:MS_1001045, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001960 ] . obo:MS_1001919 obo:IAO_0000115 "Main identifier of a ProteomeXchange dataset."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001919"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeXchange accession number"^^xsd:string ; rdfs:subClassOf obo:MS_1000878, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001921 obo:IAO_0000115 "Version number of a ProteomeXchange accession number."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001921"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeXchange accession number version number"^^xsd:string ; rdfs:subClassOf obo:MS_1000878, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_nonNegativeInteger ] . obo:MS_1001922 obo:IAO_0000115 "DOI unique identifier of a publication."^^xsd:string ; oboInOwl:hasExactSynonym "doi"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001922"^^xsd:string ; a owl:Class ; rdfs:label "Digital Object Identifier (DOI)"^^xsd:string ; rdfs:subClassOf obo:MS_1000878, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002480 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001923 obo:IAO_0000115 "Free text attribute that can enrich the information about an entity."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001923"^^xsd:string ; a owl:Class ; rdfs:label "external reference keyword"^^xsd:string ; rdfs:subClassOf obo:MS_1002840, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001924 obo:IAO_0000115 "Keyword present in a scientific publication."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001924"^^xsd:string ; a owl:Class ; rdfs:label "journal article keyword"^^xsd:string ; rdfs:subClassOf obo:MS_1001923, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001925 obo:IAO_0000115 "Keyword assigned by the data submitter."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001925"^^xsd:string ; a owl:Class ; rdfs:label "submitter keyword"^^xsd:string ; rdfs:subClassOf obo:MS_1001923, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001926 obo:IAO_0000115 "Keyword assigned by a data curator."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001926"^^xsd:string ; a owl:Class ; rdfs:label "curator keyword"^^xsd:string ; rdfs:subClassOf obo:MS_1001923, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001927 obo:IAO_0000115 "Hash assigned by the Tranche resource to an individual file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001927"^^xsd:string ; a owl:Class ; rdfs:label "Tranche file hash"^^xsd:string ; rdfs:subClassOf obo:MS_1000878, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001928 obo:IAO_0000115 "Hash assigned by the Tranche resource to a whole project."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001928"^^xsd:string ; a owl:Class ; rdfs:label "Tranche project hash"^^xsd:string ; rdfs:subClassOf obo:MS_1000878, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001929 obo:IAO_0000115 "URI that allows the access to one experiment in the PRIDE database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001929"^^xsd:string ; a owl:Class ; rdfs:label "PRIDE experiment URI"^^xsd:string ; rdfs:subClassOf obo:MS_1000878, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_anyURI ] . obo:MS_1001930 obo:IAO_0000115 "URI that allows the access to one project in the PRIDE database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001930"^^xsd:string ; a owl:Class ; rdfs:label "PRIDE project URI"^^xsd:string ; rdfs:subClassOf obo:MS_1000878, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_anyURI ] . obo:MS_1001931 obo:IAO_0000115 "The source interface."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001931"^^xsd:string ; a owl:Class ; rdfs:label "source interface"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000458 ] . obo:MS_1001932 obo:IAO_0000115 "The source interface model."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001932"^^xsd:string ; a owl:Class ; rdfs:label "source interface model"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001931 ] . obo:MS_1001933 obo:IAO_0000115 "The source sprayer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001933"^^xsd:string ; a owl:Class ; rdfs:label "source sprayer"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000458 ] . obo:MS_1001934 obo:IAO_0000115 "The source sprayer type."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001934"^^xsd:string ; a owl:Class ; rdfs:label "source sprayer type"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001933 ] . obo:MS_1001935 obo:IAO_0000115 "The source sprayer manufacturer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001935"^^xsd:string ; a owl:Class ; rdfs:label "source sprayer manufacturer"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001933 ] . obo:MS_1001936 obo:IAO_0000115 "The source sprayer model."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001936"^^xsd:string ; a owl:Class ; rdfs:label "source sprayer model"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001933 ] . obo:MS_1001937 obo:IAO_0000115 "Plate where the sample solution is spotted in a MALDI or similar instrument."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001937"^^xsd:string ; a owl:Class ; rdfs:label "sample plate"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000458 ] . obo:MS_1001938 obo:IAO_0000115 "The sample plate type."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001938"^^xsd:string ; a owl:Class ; rdfs:label "sample plate type"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001937 ] . obo:MS_1001939 obo:IAO_0000115 "Stainless steel plate."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001939"^^xsd:string ; a owl:Class ; rdfs:label "stainless steel plate"^^xsd:string ; rdfs:subClassOf obo:MS_1001938 . obo:MS_1001940 obo:IAO_0000115 "Coated glass plate."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001940"^^xsd:string ; a owl:Class ; rdfs:label "coated glass plate"^^xsd:string ; rdfs:subClassOf obo:MS_1001938 . obo:MS_1001941 obo:IAO_0000115 "Whether the sprayer is fed or is loaded with sample once."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001941"^^xsd:string ; a owl:Class ; rdfs:label "electrospray supply type"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000458 ] . obo:MS_1001942 obo:IAO_0000115 "The sprayer is loaded with sample once."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001942"^^xsd:string ; a owl:Class ; rdfs:label "static supply electrospray"^^xsd:string ; rdfs:subClassOf obo:MS_1001941 . obo:MS_1001943 obo:IAO_0000115 "The sprayer is continuously fed with sample."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001943"^^xsd:string ; a owl:Class ; rdfs:label "fed supply electrospray"^^xsd:string ; rdfs:subClassOf obo:MS_1001941 . obo:MS_1001944 obo:IAO_0000115 "Potential difference between Q2 and Q3 in a triple quadrupole instrument in volts."^^xsd:string ; oboInOwl:hasExactSynonym "CXP"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001944"^^xsd:string ; a owl:Class ; rdfs:label "Collision cell exit potential"^^xsd:string ; rdfs:subClassOf obo:MS_1000510, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000218 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001945 obo:IAO_0000115 "LECO nominal mass resolution time-of-flight GCxGC mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001945"^^xsd:string ; a owl:Class ; rdfs:label "Pegasus 4D"^^xsd:string ; rdfs:subClassOf obo:MS_1001800 . obo:MS_1001946 obo:IAO_0000115 "PEAKS Studio software for data analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001946"^^xsd:string ; a owl:Class ; rdfs:label "PEAKS Studio"^^xsd:string ; rdfs:subClassOf obo:MS_1001139, obo:MS_1001456, obo:MS_1001457 . obo:MS_1001947 obo:IAO_0000115 "PEAKS Online software for high throughput data analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001947"^^xsd:string ; a owl:Class ; rdfs:label "PEAKS Online"^^xsd:string ; rdfs:subClassOf obo:MS_1001139, obo:MS_1001456, obo:MS_1001457 . obo:MS_1001948 obo:IAO_0000115 "PEAKS Node software for high throughput data analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001948"^^xsd:string ; a owl:Class ; rdfs:label "PEAKS Node"^^xsd:string ; rdfs:subClassOf obo:MS_1001139, obo:MS_1001456, obo:MS_1001457 . obo:MS_1001949 obo:IAO_0000115 "Bioinformatics Solutions Inc. Software for data processing and analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001949"^^xsd:string ; a owl:Class ; rdfs:label "BSI software"^^xsd:string ; rdfs:subClassOf obo:MS_1000531 . obo:MS_1001950 obo:IAO_0000115 "The PEAKS peptide '-10lgP Score'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001950"^^xsd:string ; a owl:Class ; rdfs:label "PEAKS:peptideScore"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001951 obo:IAO_0000115 "The PEAKS protein '-10lgP Score'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001951"^^xsd:string ; a owl:Class ; rdfs:label "PEAKS:proteinScore"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001952 obo:IAO_0000115 "The ZCore probability score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001952"^^xsd:string ; a owl:Class ; rdfs:label "ZCore:probScore"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001953 obo:IAO_0000115 "The source interface manufacturer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001953"^^xsd:string ; a owl:Class ; rdfs:label "source interface manufacturer"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001931 ] . obo:MS_1001954 obo:IAO_0000115 "Parameters used in the mass spectrometry acquisition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001954"^^xsd:string ; a owl:Class ; rdfs:label "acquisition parameter"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001458 ] . obo:MS_1001955 obo:IAO_0000115 "No cleavage."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001955"^^xsd:string ; a owl:Class ; rdfs:label "no cleavage"^^xsd:string ; rdfs:subClassOf obo:MS_1001045 . obo:MS_1001956 obo:IAO_0000115 "Unspecific cleavage."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001956"^^xsd:string ; a owl:Class ; rdfs:label "unspecific cleavage"^^xsd:string ; rdfs:subClassOf obo:MS_1001045 . obo:MS_1001957 obo:IAO_0000115 "Regular expression for leukocyte elastase."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001957"^^xsd:string ; a owl:Class ; rdfs:label "(?<=[ALIV])(?"^^xsd:string ; rdfs:subClassOf obo:MS_1001180 . obo:MS_1001958 obo:IAO_0000115 "Regular expression for proline endopeptidase."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001958"^^xsd:string ; a owl:Class ; rdfs:label "(?<=[HKR]P)(?"^^xsd:string ; rdfs:subClassOf obo:MS_1001180 . obo:MS_1001959 obo:IAO_0000115 "Regular expression for glutamyl endopeptidase."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001959"^^xsd:string ; a owl:Class ; rdfs:label "(?<=[^E]E)"^^xsd:string ; rdfs:subClassOf obo:MS_1001180 . obo:MS_1001960 obo:IAO_0000115 "Regular expression for 2-iodobenzoate."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001960"^^xsd:string ; a owl:Class ; rdfs:label "(?<=W)"^^xsd:string ; rdfs:subClassOf obo:MS_1001180 . obo:MS_1001961 obo:IAO_0000115 "Algorithm used to score the match between a spectrum and a peptide ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001961"^^xsd:string ; a owl:Class ; rdfs:label "peptide spectrum match scoring algorithm"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001458 ] . obo:MS_1001962 obo:IAO_0000115 "C13 peaks to use in peak detection."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001962"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:C13 counts"^^xsd:string ; rdfs:subClassOf obo:MS_1002095, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_nonNegativeInteger ] . obo:MS_1001963 obo:IAO_0000115 "Weighting factor for protein list compilation by ProteinExtractor."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001963"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor:Weighting"^^xsd:string ; rdfs:subClassOf obo:MS_1002098, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1001964 obo:IAO_0000115 "Flag indicating a second round search with Mascot."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001964"^^xsd:string ; a owl:Class ; rdfs:label "ProteinScape:second round Mascot"^^xsd:string ; rdfs:subClassOf obo:MS_1002100, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001965 obo:IAO_0000115 "Flag indicating a second round search with Phenyx."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001965"^^xsd:string ; a owl:Class ; rdfs:label "ProteinScape:second round Phenyx"^^xsd:string ; rdfs:subClassOf obo:MS_1002100, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1001966 obo:IAO_0000115 "The mobility of an MS2 product ion, as measured by ion mobility mass spectrometry."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001966"^^xsd:string ; a owl:Class ; rdfs:label "product ion mobility"^^xsd:string ; rdfs:subClassOf obo:MS_1001221 . obo:MS_1001967 obo:IAO_0000115 "OBSOLETE The ion drift time of an MS2 product ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001967"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was replaced by ion mobility drift time (MS:1002476)."^^xsd:string ; rdfs:label "product ion drift time"^^xsd:string ; rdfs:subClassOf obo:MS_1002222, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000028 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] ; owl:deprecated true . obo:MS_1001968 obo:IAO_0000115 "Statistic to convey the confidence of the localization of an amino acid modification on a peptide sequence at the PSM-level."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001968"^^xsd:string ; a owl:Class ; rdfs:label "PTM localization PSM-level statistic"^^xsd:string ; rdfs:subClassOf obo:MS_1002689 . obo:MS_1001969 obo:IAO_0000115 "phosphoRS score for PTM site location at the PSM-level."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001969"^^xsd:string ; a owl:Class ; rdfs:label "phosphoRS score"^^xsd:string ; rdfs:subClassOf obo:MS_1001968, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002505 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001970 obo:IAO_0000115 "Probability that the respective isoform is correct."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001970"^^xsd:string ; a owl:Class ; rdfs:label "phosphoRS sequence probability"^^xsd:string ; rdfs:subClassOf obo:MS_1001968, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002505 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001971 obo:IAO_0000115 "Estimate of the probability that the respective site is truly phosphorylated."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001971"^^xsd:string ; a owl:Class ; rdfs:label "phosphoRS site probability"^^xsd:string ; rdfs:subClassOf obo:MS_1001968, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002505 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001972 obo:IAO_0000115 "Version of the post-translational modification scoring algorithm."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001972"^^xsd:string ; a owl:Class ; rdfs:label "PTM scoring algorithm version"^^xsd:string ; rdfs:subClassOf obo:MS_1001471, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001973 obo:IAO_0000115 "DeBunker software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001973"^^xsd:string ; a owl:Class ; rdfs:label "DeBunker"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1001974 obo:IAO_0000115 "Score specific to DeBunker."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001974"^^xsd:string ; a owl:Class ; rdfs:label "DeBunker:score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1001968, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002505 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001975 obo:IAO_0000115 "The difference between a theoretically calculated m/z and the corresponding experimentally measured m/z. It can be expressed as absolute or relative value."^^xsd:string ; oboInOwl:hasExactSynonym "m/z difference"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001975"^^xsd:string ; a owl:Class ; rdfs:label "delta m/z"^^xsd:string ; rdfs:subClassOf obo:MS_1001405, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000166 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000187 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000221 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001976 obo:IAO_0000115 "The difference between a theoretically calculated molecular mass M and the corresponding experimentally measured M. It can be expressed as absolute or relative value."^^xsd:string ; oboInOwl:hasExactSynonym "mass difference"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001976"^^xsd:string ; a owl:Class ; rdfs:label "delta M"^^xsd:string ; rdfs:subClassOf obo:MS_1001405, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000166 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000187 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000221 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1001977 obo:IAO_0000115 "MSQuant software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001977"^^xsd:string ; a owl:Class ; rdfs:label "MSQuant"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1001978 obo:IAO_0000115 "The PTM score from MSQuant software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001978"^^xsd:string ; a owl:Class ; rdfs:label "MSQuant:PTM-score"^^xsd:string ; rdfs:subClassOf obo:MS_1001968, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002505 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001979 obo:IAO_0000115 "The PTM score from MaxQuant software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001979"^^xsd:string ; a owl:Class ; rdfs:label "MaxQuant:PTM Score"^^xsd:string ; rdfs:subClassOf obo:MS_1001968, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002505 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001980 obo:IAO_0000115 "The Phospho (STY) Probabilities from MaxQuant software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001980"^^xsd:string ; a owl:Class ; rdfs:label "MaxQuant:Phospho (STY) Probabilities"^^xsd:string ; rdfs:subClassOf obo:MS_1001968, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002505 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001981 obo:IAO_0000115 "The Phospho (STY) Score Diffs from MaxQuant software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001981"^^xsd:string ; a owl:Class ; rdfs:label "MaxQuant:Phospho (STY) Score Diffs"^^xsd:string ; rdfs:subClassOf obo:MS_1001968, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001982 obo:IAO_0000115 "The P-site localization probability value from MaxQuant software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001982"^^xsd:string ; a owl:Class ; rdfs:label "MaxQuant:P-site localization probability"^^xsd:string ; rdfs:subClassOf obo:MS_1001968, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002505 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001983 obo:IAO_0000115 "The PTM Delta Score value from MaxQuant software (Difference between highest scoring site and second highest)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001983"^^xsd:string ; a owl:Class ; rdfs:label "MaxQuant:PTM Delta Score"^^xsd:string ; rdfs:subClassOf obo:MS_1001968, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002505 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001984 obo:IAO_0000115 "Ascore software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001984"^^xsd:string ; a owl:Class ; rdfs:label "Ascore software"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1001985 obo:IAO_0000115 "A-score for PTM site location at the PSM-level."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001985"^^xsd:string ; a owl:Class ; rdfs:label "Ascore"^^xsd:string ; rdfs:subClassOf obo:MS_1001968, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002505 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001986 obo:IAO_0000115 "H-Score for peptide phosphorylation site location."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001986"^^xsd:string ; a owl:Class ; rdfs:label "H-Score"^^xsd:string ; rdfs:subClassOf obo:MS_1001968, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002505 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1001987 obo:IAO_0000115 "Vacuum-drying MALDI sample preparation crystallization method."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001987"^^xsd:string ; a owl:Class ; rdfs:label "vacuum drying MALDI sample preparation"^^xsd:string ; rdfs:subClassOf obo:MS_1000833 . obo:MS_1001988 obo:IAO_0000115 "Crushed-crystal MALDI sample preparation method."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001988"^^xsd:string ; a owl:Class ; rdfs:label "crushed crystal MALDI sample preparation"^^xsd:string ; rdfs:subClassOf obo:MS_1000833 . obo:MS_1001989 obo:IAO_0000115 "Fast-evaporation MALDI sample preparation method."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001989"^^xsd:string ; a owl:Class ; rdfs:label "fast evaporation MALDI sample preparation"^^xsd:string ; rdfs:subClassOf obo:MS_1000833 . obo:MS_1001990 obo:IAO_0000115 "Overlayer method combining features of the crushed-crystal method and the fast-evaporation method."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001990"^^xsd:string ; a owl:Class ; rdfs:label "overlayer MALDI sample preparation"^^xsd:string ; rdfs:subClassOf obo:MS_1000833 . obo:MS_1001991 obo:IAO_0000115 "Sandwich MALDI sample preparation method."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001991"^^xsd:string ; a owl:Class ; rdfs:label "sandwich MALDI sample preparation"^^xsd:string ; rdfs:subClassOf obo:MS_1000833 . obo:MS_1001992 obo:IAO_0000115 "Spin coating MALDI sample preparation method."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001992"^^xsd:string ; a owl:Class ; rdfs:label "spin coating MALDI sample preparation"^^xsd:string ; rdfs:subClassOf obo:MS_1000833 . obo:MS_1001993 obo:IAO_0000115 "Quick & dirty (Q&D) sample preparation separating matrix handling from sample handling."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001993"^^xsd:string ; a owl:Class ; rdfs:label "quick and dirty MALDI sample preparation"^^xsd:string ; rdfs:subClassOf obo:MS_1000833 . obo:MS_1001994 obo:IAO_0000115 "Top-hat morphological filter based on the basic morphological operations 'erosion' and 'dilatation'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001994"^^xsd:string ; a owl:Class ; rdfs:label "top hat baseline reduction"^^xsd:string ; rdfs:subClassOf obo:MS_1000593 . obo:MS_1001995 obo:IAO_0000115 "Constructs the baseline by fitting multiple parabolas to the spectrum starting with the large scale structures."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001995"^^xsd:string ; a owl:Class ; rdfs:label "convex hull baseline reduction"^^xsd:string ; rdfs:subClassOf obo:MS_1000593 . obo:MS_1001996 obo:IAO_0000115 "The spectrum that will be baseline subtracted is divided into a number of segments."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001996"^^xsd:string ; a owl:Class ; rdfs:label "median baseline reduction"^^xsd:string ; rdfs:subClassOf obo:MS_1000593 . obo:MS_1001997 obo:IAO_0000115 "The random noise is removed by using the undecimated wavelet transform."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001997"^^xsd:string ; a owl:Class ; rdfs:label "wavelet transformation smoothing"^^xsd:string ; rdfs:subClassOf obo:MS_1000592 . obo:MS_1001998 obo:IAO_0000115 "It searches for known patterns in the measured spectrum."^^xsd:string ; oboInOwl:hasExactSynonym "SNAP"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001998"^^xsd:string ; a owl:Class ; rdfs:label "sophisticated numerical annotation procedure"^^xsd:string ; rdfs:subClassOf obo:MS_1000801 . obo:MS_1001999 obo:IAO_0000115 "Normalization of areas below the curves."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1001999"^^xsd:string ; a owl:Class ; rdfs:label "area normalization"^^xsd:string ; rdfs:subClassOf obo:MS_1001484 . obo:MS_1002000 obo:IAO_0000115 "A Bruker's proprietary technique where molecular ions are initially accelerated at lower energy, then collide with inert gas in a collision cell that is then 'lifted' to high potential. The use of inert gas is optional, as it could lift also fragments provided by LID."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002000"^^xsd:string ; a owl:Class ; rdfs:label "LIFT"^^xsd:string ; rdfs:subClassOf obo:MS_1000044 . obo:MS_1002001 obo:IAO_0000115 "MS1 label-based raw feature quantitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002001"^^xsd:string ; a owl:Class ; rdfs:label "MS1 label-based raw feature quantitation"^^xsd:string ; rdfs:subClassOf obo:MS_1002018, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002002 obo:IAO_0000115 "MS1 label-based peptide level quantitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002002"^^xsd:string ; a owl:Class ; rdfs:label "MS1 label-based peptide level quantitation"^^xsd:string ; rdfs:subClassOf obo:MS_1002018, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002003 obo:IAO_0000115 "MS1 label-based protein level quantitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002003"^^xsd:string ; a owl:Class ; rdfs:label "MS1 label-based protein level quantitation"^^xsd:string ; rdfs:subClassOf obo:MS_1002018, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002004 obo:IAO_0000115 "MS1 label-based proteingroup level quantitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002004"^^xsd:string ; a owl:Class ; rdfs:label "MS1 label-based proteingroup level quantitation"^^xsd:string ; rdfs:subClassOf obo:MS_1002018, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002005 obo:IAO_0000115 "A de facto standard providing the retention times at which a specific set of 10 reference peptides exit the reference chromatographic column. The kit may be obtain from Biognosys."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002005"^^xsd:string ; a owl:Class ; rdfs:label "iRT retention time normalization standard"^^xsd:string ; rdfs:subClassOf obo:MS_1000901 . obo:MS_1002006 obo:IAO_0000115 "The type of the transitions, e.g. target or decoy."^^xsd:string ; oboInOwl:hasExactSynonym "MRM transition type"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002006"^^xsd:string ; a owl:Class ; rdfs:label "SRM transition type"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000908 ] . obo:MS_1002007 obo:IAO_0000115 "A transition used to target a specific compound that may be in the sample."^^xsd:string ; oboInOwl:hasExactSynonym "target MRM transition"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002007"^^xsd:string ; a owl:Class ; rdfs:label "target SRM transition"^^xsd:string ; rdfs:subClassOf obo:MS_1002006 . obo:MS_1002008 obo:IAO_0000115 "A transition not expected to be present in the sample and used to calculate statistical confidence of target transition detections in some workflows."^^xsd:string ; oboInOwl:hasExactSynonym "decoy MRM transition"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002008"^^xsd:string ; a owl:Class ; rdfs:label "decoy SRM transition"^^xsd:string ; rdfs:subClassOf obo:MS_1002006 . obo:MS_1002009 obo:IAO_0000115 "Quantitation analysis using an isobaric labelling workflow."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002009"^^xsd:string ; a owl:Class ; rdfs:label "isobaric label quantitation analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1001833 . obo:MS_1002010 obo:IAO_0000115 "Quantitation analysis using the Thermo Fisher amine-reactive tandem mass tag (TMT) labelling workflow, wherein 2-10 reporter ions are measured in MS2 spectra in the 126-131 m/z."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002010"^^xsd:string ; a owl:Class ; rdfs:label "TMT quantitation analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1002009 . obo:MS_1002011 obo:IAO_0000115 "Combination of electrospray and desorption ionization method that ionizes gases, liquids and solids in open air under atmospheric pressure."^^xsd:string ; oboInOwl:hasExactSynonym "DESI"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002011"^^xsd:string ; a owl:Class ; rdfs:label "desorption electrospray ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000240 . obo:MS_1002012 obo:IAO_0000115 "Relative probability that PTM site assignment is correct, derived from the Mascot score difference between matches to the same spectrum (Mascot Delta Score)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002012"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:PTM site assignment confidence"^^xsd:string ; rdfs:subClassOf obo:MS_1001968, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000187 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002013 obo:IAO_0000115 "Collision energy at the start of the collision energy ramp."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002013"^^xsd:string ; a owl:Class ; rdfs:label "collision energy ramp start"^^xsd:string ; rdfs:subClassOf obo:MS_1000045, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000266 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002014 obo:IAO_0000115 "Collision energy at the end of the collision energy ramp."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002014"^^xsd:string ; a owl:Class ; rdfs:label "collision energy ramp end"^^xsd:string ; rdfs:subClassOf obo:MS_1000045, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000266 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002015 obo:IAO_0000115 "Spectral count peptide level quantitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002015"^^xsd:string ; a owl:Class ; rdfs:label "spectral count peptide level quantitation"^^xsd:string ; rdfs:subClassOf obo:MS_1001836, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002016 obo:IAO_0000115 "Spectral count protein level quantitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002016"^^xsd:string ; a owl:Class ; rdfs:label "spectral count protein level quantitation"^^xsd:string ; rdfs:subClassOf obo:MS_1001836, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002017 obo:IAO_0000115 "Spectral count proteingroup level quantitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002017"^^xsd:string ; a owl:Class ; rdfs:label "spectral count proteingroup level quantitation"^^xsd:string ; rdfs:subClassOf obo:MS_1001836, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002018 obo:IAO_0000115 "MS1 label-based analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002018"^^xsd:string ; a owl:Class ; rdfs:label "MS1 label-based analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1001833 . obo:MS_1002019 obo:IAO_0000115 "Label-free raw feature quantitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002019"^^xsd:string ; a owl:Class ; rdfs:label "label-free raw feature quantitation"^^xsd:string ; rdfs:subClassOf obo:MS_1001834, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002020 obo:IAO_0000115 "Label-free peptide level quantitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002020"^^xsd:string ; a owl:Class ; rdfs:label "label-free peptide level quantitation"^^xsd:string ; rdfs:subClassOf obo:MS_1001834, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002021 obo:IAO_0000115 "Label-free protein level quantitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002021"^^xsd:string ; a owl:Class ; rdfs:label "label-free protein level quantitation"^^xsd:string ; rdfs:subClassOf obo:MS_1001834, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002022 obo:IAO_0000115 "Label-free proteingroup level quantitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002022"^^xsd:string ; a owl:Class ; rdfs:label "label-free proteingroup level quantitation"^^xsd:string ; rdfs:subClassOf obo:MS_1001834, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002023 obo:IAO_0000115 "MS2 tag-based analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002023"^^xsd:string ; a owl:Class ; rdfs:label "MS2 tag-based analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1001833 . obo:MS_1002024 obo:IAO_0000115 "MS2 tag-based feature level quantitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002024"^^xsd:string ; a owl:Class ; rdfs:label "MS2 tag-based feature level quantitation"^^xsd:string ; rdfs:subClassOf obo:MS_1002023, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002025 obo:IAO_0000115 "MS2 tag-based peptide level quantitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002025"^^xsd:string ; a owl:Class ; rdfs:label "MS2 tag-based peptide level quantitation"^^xsd:string ; rdfs:subClassOf obo:MS_1002023, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002026 obo:IAO_0000115 "MS2 tag-based protein level quantitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002026"^^xsd:string ; a owl:Class ; rdfs:label "MS2 tag-based protein level quantitation"^^xsd:string ; rdfs:subClassOf obo:MS_1002023, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002027 obo:IAO_0000115 "MS2 tag-based proteingroup level quantitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002027"^^xsd:string ; a owl:Class ; rdfs:label "MS2 tag-based proteingroup level quantitation"^^xsd:string ; rdfs:subClassOf obo:MS_1002023, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002028 obo:IAO_0000115 "Nucleic acid base modification (substitution, insertion or deletion)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002028"^^xsd:string ; a owl:Class ; rdfs:label "nucleic acid base modification"^^xsd:string ; rdfs:subClassOf obo:MS_1001471, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002029 obo:IAO_0000115 "Specification of the original nucleic acid sequence, prior to a modification. The value slot should hold the DNA or RNA sequence."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002029"^^xsd:string ; a owl:Class ; rdfs:label "original nucleic acid sequence"^^xsd:string ; rdfs:subClassOf obo:MS_1001471, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002030 obo:IAO_0000115 "Specification of the modified nucleic acid sequence. The value slot should hold the DNA or RNA sequence."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002030"^^xsd:string ; a owl:Class ; rdfs:label "modified nucleic acid sequence"^^xsd:string ; rdfs:subClassOf obo:MS_1001471, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002031 obo:IAO_0000115 "URI to retrieve transition group data for a PASSEL (PeptideAtlas SRM Experiment Library) experiment."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002031"^^xsd:string ; a owl:Class ; rdfs:label "PASSEL transition group browser URI"^^xsd:string ; rdfs:subClassOf obo:MS_1000878, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_anyURI ] . obo:MS_1002032 obo:IAO_0000115 "URI that allows access to a PeptideAtlas dataset."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002032"^^xsd:string ; a owl:Class ; rdfs:label "PeptideAtlas dataset URI"^^xsd:string ; rdfs:subClassOf obo:MS_1000878, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_anyURI ] . obo:MS_1002033 obo:IAO_0000115 "Role of the contact person."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002033"^^xsd:string ; a owl:Class ; rdfs:label "contact role"^^xsd:string ; rdfs:subClassOf obo:MS_1000585 . obo:MS_1002034 obo:IAO_0000115 "The first of a set of authors associated with a publication or release. There may be more than one first author in cases where several authors share primary attribution."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002034"^^xsd:string ; a owl:Class ; rdfs:label "first author"^^xsd:string ; rdfs:subClassOf obo:MS_1002033 . obo:MS_1002035 obo:IAO_0000115 "The last of a set of authors associated with a publication or release. There may be more than one senior author in cases where several authors share senior attribution."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002035"^^xsd:string ; a owl:Class ; rdfs:label "senior author"^^xsd:string ; rdfs:subClassOf obo:MS_1002033 . obo:MS_1002036 obo:IAO_0000115 "One of a set of authors associated with a publication or release."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002036"^^xsd:string ; a owl:Class ; rdfs:label "co-author"^^xsd:string ; rdfs:subClassOf obo:MS_1002033 . obo:MS_1002037 obo:IAO_0000115 "A person who submits a dataset to a repository."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002037"^^xsd:string ; a owl:Class ; rdfs:label "dataset submitter"^^xsd:string ; rdfs:subClassOf obo:MS_1002033 . obo:MS_1002038 obo:IAO_0000115 "A sample that has not been labelled or modified. This is often referred to as \"light\" to distinguish from \"heavy\"."^^xsd:string ; oboInOwl:hasExactSynonym "light sample"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002038"^^xsd:string ; a owl:Class ; rdfs:label "label free sample"^^xsd:string ; rdfs:subClassOf obo:MS_1000548 . obo:MS_1002039 obo:IAO_0000115 "Inlet properties that are associated with a value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002039"^^xsd:string ; a owl:Class ; rdfs:label "inlet attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1000547, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000458 ] . obo:MS_1002040 obo:IAO_0000115 "The temperature of the inlet of a mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002040"^^xsd:string ; a owl:Class ; rdfs:label "inlet temperature"^^xsd:string ; rdfs:subClassOf obo:MS_1000482, obo:MS_1002039, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000027 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002041 obo:IAO_0000115 "The temperature of the source of a mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002041"^^xsd:string ; a owl:Class ; rdfs:label "source temperature"^^xsd:string ; rdfs:subClassOf obo:MS_1000482, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000027 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002042 obo:IAO_0000115 "The duration of a complete cycle of modulation in a comprehensive two-dimensional separation system, equals the length of a second dimension chromatogram, i.e., the time between two successive injections into the second column."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002042"^^xsd:string ; a owl:Class ; rdfs:label "modulation time"^^xsd:string ; rdfs:subClassOf obo:MS_1000857, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000031 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002043 obo:IAO_0000115 "ProteinProspector software for data acquisition and analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002043"^^xsd:string ; a owl:Class ; rdfs:label "ProteinProspector"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002044 obo:IAO_0000115 "The ProteinProspector result 'Score'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002044"^^xsd:string ; a owl:Class ; rdfs:label "ProteinProspector:score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002045 obo:IAO_0000115 "The ProteinProspector result 'Expectation value'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002045"^^xsd:string ; a owl:Class ; rdfs:label "ProteinProspector:expectation value"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002046 obo:IAO_0000115 "The original source path used for directory-based sources."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002046"^^xsd:string ; a owl:Class ; rdfs:label "native source path"^^xsd:string ; rdfs:subClassOf obo:MS_1001458, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002047 obo:IAO_0000115 "MS-GF software used to re-score the peptide-spectrum matches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002047"^^xsd:string ; a owl:Class ; rdfs:label "MS-GF"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002048 obo:IAO_0000115 "MS-GF+ software used to analyze the spectra."^^xsd:string ; oboInOwl:hasExactSynonym "MS-GFDB"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002048"^^xsd:string ; a owl:Class ; rdfs:label "MS-GF+"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002049 obo:IAO_0000115 "MS-GF raw score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002049"^^xsd:string ; a owl:Class ; rdfs:label "MS-GF:RawScore"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002050 obo:IAO_0000115 "MS-GF de novo score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002050"^^xsd:string ; a owl:Class ; rdfs:label "MS-GF:DeNovoScore"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002051 obo:IAO_0000115 "MS-GF energy score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002051"^^xsd:string ; a owl:Class ; rdfs:label "MS-GF:Energy"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_nonNegativeInteger ] . obo:MS_1002052 obo:IAO_0000115 "MS-GF spectral E-value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002052"^^xsd:string ; a owl:Class ; rdfs:label "MS-GF:SpecEValue"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1002353, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002109 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002053 obo:IAO_0000115 "MS-GF E-value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002053"^^xsd:string ; a owl:Class ; rdfs:label "MS-GF:EValue"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1002353, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002109 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002054 obo:IAO_0000115 "MS-GF Q-value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002054"^^xsd:string ; a owl:Class ; rdfs:label "MS-GF:QValue"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1002354, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002055 obo:IAO_0000115 "MS-GF peptide-level Q-value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002055"^^xsd:string ; a owl:Class ; rdfs:label "MS-GF:PepQValue"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002056 obo:IAO_0000115 "MS-GF posterior error probability."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002056"^^xsd:string ; a owl:Class ; rdfs:label "MS-GF:PEP"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002057 obo:IAO_0000115 "As parameter for search engine: apply the modification only at the N-terminus of a protein."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002057"^^xsd:string ; a owl:Class ; rdfs:label "modification specificity protein N-term"^^xsd:string ; rdfs:subClassOf obo:MS_1001056 . obo:MS_1002058 obo:IAO_0000115 "As parameter for search engine: apply the modification only at the C-terminus of a protein."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002058"^^xsd:string ; a owl:Class ; rdfs:label "modification specificity protein C-term"^^xsd:string ; rdfs:subClassOf obo:MS_1001056 . obo:MS_1002059 obo:IAO_0000115 "Microsoft Excel (can be used for spectral counting)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002059"^^xsd:string ; a owl:Class ; rdfs:label "Microsoft Excel"^^xsd:string ; rdfs:subClassOf obo:MS_1001139 . obo:MS_1002060 obo:IAO_0000115 "The name of the UniProtKB/TrEMBL database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002060"^^xsd:string ; a owl:Class ; rdfs:label "database UniProtKB/TrEMBL"^^xsd:string ; rdfs:subClassOf obo:MS_1002126 . obo:MS_1002061 obo:IAO_0000115 "OBSOLETE Decoy database from a TrEMBL protein sequence database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002061"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^xsd:string ; rdfs:label "decoy DB from UniProtKB/TrEMBL"^^xsd:string ; owl:deprecated true . obo:MS_1002062 obo:IAO_0000115 "Metabolic labelling: natural N (mainly 14N)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002062"^^xsd:string ; a owl:Class ; rdfs:label "metabolic labelling: natural N (mainly 14N)"^^xsd:string ; rdfs:subClassOf obo:MS_1001055 . obo:MS_1002063 obo:IAO_0000115 "Software e.g. for SILAC and 14N/15N workflow, part of the PeakQuant suite."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002063"^^xsd:string ; a owl:Class ; rdfs:label "FindPairs"^^xsd:string ; rdfs:subClassOf obo:MS_1001139 . obo:MS_1002064 obo:IAO_0000115 "Peptide consensus retention time."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002064"^^xsd:string ; a owl:Class ; rdfs:label "peptide consensus RT"^^xsd:string ; rdfs:subClassOf obo:MS_1002737, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002065 obo:IAO_0000115 "Peptide consensus mass/charge ratio."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002065"^^xsd:string ; a owl:Class ; rdfs:label "peptide consensus m/z"^^xsd:string ; rdfs:subClassOf obo:MS_1002737, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002066 obo:IAO_0000115 "Method used to calculate the ratio."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002066"^^xsd:string ; a owl:Class ; rdfs:label "ratio calculation method"^^xsd:string ; rdfs:subClassOf obo:MS_1001805, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002067 obo:IAO_0000115 "Protein quantification value calculated as median of peptide ratios."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002067"^^xsd:string ; a owl:Class ; rdfs:label "protein value: median of peptide ratios"^^xsd:string ; rdfs:subClassOf obo:MS_1002738, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002068 obo:IAO_0000115 "Metabolic labelling: heavy N (mainly 15N)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002068"^^xsd:string ; a owl:Class ; rdfs:label "metabolic labelling: heavy N (mainly 15N)"^^xsd:string ; rdfs:subClassOf obo:MS_1001055 . obo:MS_1002069 obo:IAO_0000115 "Metabolic labelling: Description of labelling purity. Usually the purity of feeding material (e.g. 95%), or the inclusion rate derived from isotopic peak pattern shape."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002069"^^xsd:string ; a owl:Class ; rdfs:label "metabolic labelling purity"^^xsd:string ; rdfs:subClassOf obo:MS_1001055, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002070 obo:IAO_0000115 "Perform a t-test (two groups). Specify in string value, whether paired / unpaired, variance equal / different, one- / two-sided version is performed."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002070"^^xsd:string ; a owl:Class ; rdfs:label "t-test"^^xsd:string ; rdfs:subClassOf obo:MS_1001861, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002071 obo:IAO_0000115 "Perform an ANOVA-test (more than two groups). Specify in string value, which version is performed."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002071"^^xsd:string ; a owl:Class ; rdfs:label "ANOVA-test"^^xsd:string ; rdfs:subClassOf obo:MS_1001861, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002072 obo:IAO_0000115 "P-value as result of one of the processing steps described. Specify in the description, which processing step it was."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002072"^^xsd:string ; a owl:Class ; rdfs:label "p-value"^^xsd:string ; rdfs:subClassOf obo:MS_1001805, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002073 obo:IAO_0000115 "The mzIdentML format for peptide and protein identification data from the PSI. File extension '.mzid'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002073"^^xsd:string ; a owl:Class ; rdfs:label "mzIdentML format"^^xsd:string ; rdfs:subClassOf obo:MS_1001040 . obo:MS_1002074 obo:IAO_0000115 "File format containing quantification results."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002074"^^xsd:string ; a owl:Class ; rdfs:label "quantification file format"^^xsd:string ; rdfs:subClassOf obo:MS_1001459 . obo:MS_1002075 obo:IAO_0000115 "The mzQuantML format for quantification data from the PSI. File extension '.mzq'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002075"^^xsd:string ; a owl:Class ; rdfs:label "mzQuantML format"^^xsd:string ; rdfs:subClassOf obo:MS_1002074 . obo:MS_1002076 obo:IAO_0000115 "PAnalyzer software for getting protein evidence categories."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002076"^^xsd:string ; a owl:Class ; rdfs:label "PAnalyzer"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002077 obo:IAO_0000115 "Bruker Daltonics' impact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002077"^^xsd:string ; a owl:Class ; rdfs:label "impact"^^xsd:string ; rdfs:subClassOf obo:MS_1001536 . obo:MS_1002078 obo:IAO_0000115 "OBSOLETE ProteomeDiscoverer's 1st static post-translational modification (PTM) input parameter."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002078"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use ProteomeDiscoverer:Static Modification (MS:1001645) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:1. Static Modification"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1002079 obo:IAO_0000115 "OBSOLETE ProteomeDiscoverer's 2nd static post-translational modification (PTM) input parameter."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002079"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use ProteomeDiscoverer:Static Modification (MS:1001645) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:2. Static Modification"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1002080 obo:IAO_0000115 "Precursor clipping range before."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002080"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range Before"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000221 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002081 obo:IAO_0000115 "Precursor clipping range after."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002081"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range After"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000221 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002082 obo:IAO_0000115 "The time of elution from the first chromatographic column in the chromatographic separation step, relative to the start of chromatography on the first column."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002082"^^xsd:string ; a owl:Class ; rdfs:label "first column elution time"^^xsd:string ; rdfs:subClassOf obo:MS_1000503, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000031 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002083 obo:IAO_0000115 "The time of elution from the second chromatographic column in the chromatographic separation step, relative to the start of the chromatography on the second column."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002083"^^xsd:string ; a owl:Class ; rdfs:label "second column elution time"^^xsd:string ; rdfs:subClassOf obo:MS_1000503, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000031 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002084 obo:IAO_0000115 "Multidimensional chromatography modulation description."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002084"^^xsd:string ; a owl:Class ; rdfs:label "multidimensional chromatography modulation description"^^xsd:string ; rdfs:subClassOf obo:MS_1000857 . obo:MS_1002085 obo:IAO_0000115 "Two-dimensional gas chromatography where a single modulation time is used throughout the acquisition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002085"^^xsd:string ; a owl:Class ; rdfs:label "two-dimensional gas chromatography with fixed modulation time"^^xsd:string ; rdfs:subClassOf obo:MS_1002084 . obo:MS_1002086 obo:IAO_0000115 "Two-dimensional gas chromatography where the acquisition is divided into steps, each with a different modulation time."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002086"^^xsd:string ; a owl:Class ; rdfs:label "two-dimensional gas chromatography with discrete modulation time steps"^^xsd:string ; rdfs:subClassOf obo:MS_1002084 . obo:MS_1002087 obo:IAO_0000115 "Two-dimensional liquid chromatography where a single modulation time is used throughout the acquisition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002087"^^xsd:string ; a owl:Class ; rdfs:label "two-dimensional liquid chromatography with fixed modulation time"^^xsd:string ; rdfs:subClassOf obo:MS_1002084 . obo:MS_1002088 obo:IAO_0000115 "Two-dimensional liquid chromatography where the acquisition is divided into steps, each with a different modulation time."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002088"^^xsd:string ; a owl:Class ; rdfs:label "two-dimensional liquid chromatography with discrete modulation time steps"^^xsd:string ; rdfs:subClassOf obo:MS_1002084 . obo:MS_1002089 obo:IAO_0000115 "XCorr threshold for storing peptides that do not belong to a protein."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002089"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Peptide Without Protein XCorr Threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002090 obo:IAO_0000115 "Flag indicating that a probability score for the assessment that a reported peptide match is a random occurrence is calculated."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002090"^^xsd:string ; a owl:Class ; rdfs:label "Calculate Probability Scores"^^xsd:string ; rdfs:subClassOf obo:MS_1002094, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002091 obo:IAO_0000115 "Delta Cn threshold for filtering out PSM's."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002091"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Maximum Delta Cn"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002092 obo:IAO_0000115 "Algorithm (e.g. q-value or PEP) used for calculation of the validation score using Percolator."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002092"^^xsd:string ; a owl:Class ; rdfs:label "Percolator:Validation based on"^^xsd:string ; rdfs:subClassOf obo:MS_1002107, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002093 obo:IAO_0000115 "Search engine input parameter."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002093"^^xsd:string ; a owl:Class ; rdfs:label "search engine input parameter"^^xsd:string ; rdfs:subClassOf obo:MS_1001249 . obo:MS_1002094 obo:IAO_0000115 "Search engine input parameter that is shared by more than one search engine."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002094"^^xsd:string ; a owl:Class ; rdfs:label "common search engine input parameter"^^xsd:string ; rdfs:subClassOf obo:MS_1002093 . obo:MS_1002095 obo:IAO_0000115 "Search engine input parameters specific to Mascot."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002095"^^xsd:string ; a owl:Class ; rdfs:label "Mascot input parameter"^^xsd:string ; rdfs:subClassOf obo:MS_1001302 . obo:MS_1002096 obo:IAO_0000115 "Search engine input parameters specific to SEQUEST."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002096"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST input parameter"^^xsd:string ; rdfs:subClassOf obo:MS_1001302 . obo:MS_1002097 obo:IAO_0000115 "Search engine input parameters specific to Phenyx."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002097"^^xsd:string ; a owl:Class ; rdfs:label "Phenyx input parameter"^^xsd:string ; rdfs:subClassOf obo:MS_1001302 . obo:MS_1002098 obo:IAO_0000115 "Search engine input parameters specific to ProteinExtractor."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002098"^^xsd:string ; a owl:Class ; rdfs:label "ProteinExtractor input parameter"^^xsd:string ; rdfs:subClassOf obo:MS_1001302 . obo:MS_1002099 obo:IAO_0000115 "Search engine input parameters specific to OMSSA."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002099"^^xsd:string ; a owl:Class ; rdfs:label "OMSSA input parameter"^^xsd:string ; rdfs:subClassOf obo:MS_1001302 . obo:MS_1002100 obo:IAO_0000115 "Search engine input parameters specific to ProteinScape."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002100"^^xsd:string ; a owl:Class ; rdfs:label "ProteinScape input parameter"^^xsd:string ; rdfs:subClassOf obo:MS_1001302 . obo:MS_1002101 obo:IAO_0000115 "Search engine input parameters specific to ProteomeDiscoverer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002101"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer input parameter"^^xsd:string ; rdfs:subClassOf obo:MS_1001302 . obo:MS_1002103 obo:IAO_0000115 "Software input parameters."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002103"^^xsd:string ; a owl:Class ; rdfs:label "software input parameter"^^xsd:string ; rdfs:subClassOf obo:MS_1001249 . obo:MS_1002104 obo:IAO_0000115 "Software input parameter that is shared by more than one software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002104"^^xsd:string ; a owl:Class ; rdfs:label "common software input parameter"^^xsd:string ; rdfs:subClassOf obo:MS_1002103 . obo:MS_1002105 obo:IAO_0000115 "Software specific input parameter."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002105"^^xsd:string ; a owl:Class ; rdfs:label "software specific input parameter"^^xsd:string ; rdfs:subClassOf obo:MS_1002103 . obo:MS_1002106 obo:IAO_0000115 "Search engine input parameters specific to Scaffold."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002106"^^xsd:string ; a owl:Class ; rdfs:label "Scaffold input parameter"^^xsd:string ; rdfs:subClassOf obo:MS_1002105 . obo:MS_1002107 obo:IAO_0000115 "Search engine input parameters specific to Percolator."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002107"^^xsd:string ; a owl:Class ; rdfs:label "Percolator input parameter"^^xsd:string ; rdfs:subClassOf obo:MS_1002105 . obo:MS_1002108 obo:IAO_0000115 "Indicates that a higher score is better."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002108"^^xsd:string ; a owl:Class ; rdfs:label "higher score better"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001153 ] . obo:MS_1002109 obo:IAO_0000115 "Indicates that a lower score is better."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002109"^^xsd:string ; a owl:Class ; rdfs:label "lower score better"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001153 ] . obo:MS_1002110 obo:IAO_0000115 "Attribute describing an assay."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002110"^^xsd:string ; a owl:Class ; rdfs:label "assay attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1001806 . obo:MS_1002111 obo:IAO_0000115 "Attribute describing an assay label."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002111"^^xsd:string ; a owl:Class ; rdfs:label "assay label attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1001806 . obo:MS_1002112 obo:IAO_0000115 "Attribute describing a protein group list."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002112"^^xsd:string ; a owl:Class ; rdfs:label "protein group list attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1001806 . obo:MS_1002113 obo:IAO_0000115 "Attribute describing a protein group."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002113"^^xsd:string ; a owl:Class ; rdfs:label "protein group attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1001806 . obo:MS_1002114 obo:IAO_0000115 "Attribute describing a protein list."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002114"^^xsd:string ; a owl:Class ; rdfs:label "protein list attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1001806 . obo:MS_1002115 obo:IAO_0000115 "Attribute describing a peptide consensus list."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002115"^^xsd:string ; a owl:Class ; rdfs:label "peptide consensus list attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1001806 . obo:MS_1002116 obo:IAO_0000115 "Attribute describing a peptide consensus."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002116"^^xsd:string ; a owl:Class ; rdfs:label "peptide consensus attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1001806 . obo:MS_1002117 obo:IAO_0000115 "Attribute describing a small molecule list."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002117"^^xsd:string ; a owl:Class ; rdfs:label "small molecule list attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1001806 . obo:MS_1002118 obo:IAO_0000115 "Attribute describing a small molecule."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002118"^^xsd:string ; a owl:Class ; rdfs:label "small molecule attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1001806 . obo:MS_1002119 obo:IAO_0000115 "Attribute describing a small molecule modification."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002119"^^xsd:string ; a owl:Class ; rdfs:label "small molecule modification attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1001806 . obo:MS_1002120 obo:IAO_0000115 "The name for identifying an experiment."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002120"^^xsd:string ; a owl:Class ; rdfs:label "experiment name"^^xsd:string ; rdfs:subClassOf obo:MS_1001806 . obo:MS_1002121 obo:IAO_0000115 "Dummy decribing a spectral count feature."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002121"^^xsd:string ; a owl:Class ; rdfs:label "spectral count feature"^^xsd:string ; rdfs:subClassOf obo:MS_1001828 . obo:MS_1002122 obo:IAO_0000115 "FeatureList of spectral counts."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002122"^^xsd:string ; a owl:Class ; rdfs:label "counts reporting"^^xsd:string ; rdfs:subClassOf obo:MS_1001825 . obo:MS_1002123 obo:IAO_0000115 "X-Tracker generic tool for quantitative proteomics."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002123"^^xsd:string ; a owl:Class ; rdfs:label "x-Tracker"^^xsd:string ; rdfs:subClassOf obo:MS_1001139 . obo:MS_1002124 obo:IAO_0000115 "ProteoSuite software for the analysis of quantitative proteomics data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002124"^^xsd:string ; a owl:Class ; rdfs:label "ProteoSuite"^^xsd:string ; rdfs:subClassOf obo:MS_1001139 . obo:MS_1002125 obo:IAO_0000115 "OBSOLETE FDRScore values specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002125"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it was split into the more specific terms for PSM-level combined FDRScore (MS:1002356), distinct peptide-level combined FDRScore (MS:1002361), protein-level combined FDRScore (MS:1002366) and protein group-level combined FDRScore (MS:1002375)."^^xsd:string ; rdfs:label "combined FDRScore"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1001153, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] ; owl:deprecated true . obo:MS_1002126 obo:IAO_0000115 "The name of the UniProtKB knowledgebase."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002126"^^xsd:string ; a owl:Class ; rdfs:label "database UniProtKB"^^xsd:string ; rdfs:subClassOf obo:MS_1001013 . obo:MS_1002127 obo:IAO_0000115 "Attribute describing an identification file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002127"^^xsd:string ; a owl:Class ; rdfs:label "identification file attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1001806 . obo:MS_1002128 obo:IAO_0000115 "Attribute describing a method file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002128"^^xsd:string ; a owl:Class ; rdfs:label "method file format"^^xsd:string ; rdfs:subClassOf obo:MS_1001459 . obo:MS_1002129 obo:IAO_0000115 "Software for iTRAQ workflow. Extracts and normalizes iTRAQ information from an MS experiment."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002129"^^xsd:string ; a owl:Class ; rdfs:label "ITRAQAnalyzer"^^xsd:string ; rdfs:subClassOf obo:MS_1000752, obo:MS_1001139 . obo:MS_1002130 obo:IAO_0000115 "Attribute describing an identification file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002130"^^xsd:string ; a owl:Class ; rdfs:label "identification file format"^^xsd:string ; rdfs:subClassOf obo:MS_1001459 . obo:MS_1002131 obo:IAO_0000115 "Noise filter component of the TOPP software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002131"^^xsd:string ; a owl:Class ; rdfs:label "TOPP noise filter"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002132 obo:IAO_0000115 "Removes noise from profile spectra by using a gaussian smoothing."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002132"^^xsd:string ; a owl:Class ; rdfs:label "TOPP NoiseFilterGaussian"^^xsd:string ; rdfs:subClassOf obo:MS_1002131 . obo:MS_1002133 obo:IAO_0000115 "Removes noise from profile spectra by using a Savitzky-Golay smoothing."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002133"^^xsd:string ; a owl:Class ; rdfs:label "TOPP NoiseFilterSGolay"^^xsd:string ; rdfs:subClassOf obo:MS_1002131 . obo:MS_1002134 obo:IAO_0000115 "Peak picker component of the TOPP software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002134"^^xsd:string ; a owl:Class ; rdfs:label "TOPP peak picker"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002135 obo:IAO_0000115 "Finds mass spectrometric peaks in high-resoluted profile mass spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002135"^^xsd:string ; a owl:Class ; rdfs:label "TOPP PeakPickerHiRes"^^xsd:string ; rdfs:subClassOf obo:MS_1002134 . obo:MS_1002136 obo:IAO_0000115 "Finds mass spectrometric peaks with a wavelet algorithm in low-resoluted profile mass spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002136"^^xsd:string ; a owl:Class ; rdfs:label "TOPP PeakPickerWavelet"^^xsd:string ; rdfs:subClassOf obo:MS_1002134 . obo:MS_1002137 obo:IAO_0000115 "Spectra filter component of the TOPP software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002137"^^xsd:string ; a owl:Class ; rdfs:label "TOPP spectra filter"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002138 obo:IAO_0000115 "Applies a Bern et al normalization to peak spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002138"^^xsd:string ; a owl:Class ; rdfs:label "TOPP SpectraFilterBernNorm"^^xsd:string ; rdfs:subClassOf obo:MS_1002137 . obo:MS_1002139 obo:IAO_0000115 "Applies a filter to peak spectra for marked peaks."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002139"^^xsd:string ; a owl:Class ; rdfs:label "TOPP SpectraFilterMarkerMower"^^xsd:string ; rdfs:subClassOf obo:MS_1002137 . obo:MS_1002140 obo:IAO_0000115 "Retains the n largest peaks of a peak spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002140"^^xsd:string ; a owl:Class ; rdfs:label "TOPP SpectraFilterNLargest"^^xsd:string ; rdfs:subClassOf obo:MS_1002137 . obo:MS_1002141 obo:IAO_0000115 "Applies a TIC/maximal intensity normalization to peak spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002141"^^xsd:string ; a owl:Class ; rdfs:label "TOPP SpectraFilterNormalizer"^^xsd:string ; rdfs:subClassOf obo:MS_1002137 . obo:MS_1002142 obo:IAO_0000115 "Filters putative unfragmented precursor ions from tandem spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002142"^^xsd:string ; a owl:Class ; rdfs:label "TOPP SpectraFilterParentPeakMower"^^xsd:string ; rdfs:subClassOf obo:MS_1002137 . obo:MS_1002143 obo:IAO_0000115 "Applies a filter to peak spectra after intensity scaling according to rank."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002143"^^xsd:string ; a owl:Class ; rdfs:label "TOPP SpectraFilterScaler"^^xsd:string ; rdfs:subClassOf obo:MS_1002137 . obo:MS_1002144 obo:IAO_0000115 "Applies a filter to peak spectra after intensity scaling to the square root."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002144"^^xsd:string ; a owl:Class ; rdfs:label "TOPP SpectraFilterSqrtMower"^^xsd:string ; rdfs:subClassOf obo:MS_1002137 . obo:MS_1002145 obo:IAO_0000115 "Applies a filter of peaks below a given threshold to peak spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002145"^^xsd:string ; a owl:Class ; rdfs:label "TOPP SpectraFilterThresholdMower"^^xsd:string ; rdfs:subClassOf obo:MS_1002137 . obo:MS_1002146 obo:IAO_0000115 "Applies a filter of the largest peaks in a sliding window over a peak spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002146"^^xsd:string ; a owl:Class ; rdfs:label "TOPP SpectraFilterWindowMower"^^xsd:string ; rdfs:subClassOf obo:MS_1002137 . obo:MS_1002147 obo:IAO_0000115 "Map aligner component of the TOPP software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002147"^^xsd:string ; a owl:Class ; rdfs:label "TOPP map aligner"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002148 obo:IAO_0000115 "Corrects retention time distortions between maps based on common peptide identifications."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002148"^^xsd:string ; a owl:Class ; rdfs:label "TOPP MapAlignerIdentification"^^xsd:string ; rdfs:subClassOf obo:MS_1002147 . obo:MS_1002149 obo:IAO_0000115 "Corrects retention time distortions between maps using a pose clustering approach."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002149"^^xsd:string ; a owl:Class ; rdfs:label "TOPP MapAlignerPoseClustering"^^xsd:string ; rdfs:subClassOf obo:MS_1002147 . obo:MS_1002150 obo:IAO_0000115 "Corrects retention time distortions between maps by spectrum alignment."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002150"^^xsd:string ; a owl:Class ; rdfs:label "TOPP MapAlignerSpectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1002147 . obo:MS_1002151 obo:IAO_0000115 "Attribute describing the data type of the numerator of a ratio."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002151"^^xsd:string ; a owl:Class ; rdfs:label "numerator data type attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1001806 . obo:MS_1002152 obo:IAO_0000115 "Attribute describing the data type of the denominator of a ratio."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002152"^^xsd:string ; a owl:Class ; rdfs:label "denominator data type attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1001806 . obo:MS_1002153 obo:IAO_0000115 "The number of spectra identified for this protein in spectral counting."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002153"^^xsd:string ; a owl:Class ; rdfs:label "protein level PSM counts"^^xsd:string ; rdfs:subClassOf obo:MS_1002738, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002154 obo:IAO_0000115 "Extracts spectra of an MS run file to several files in DTA format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002154"^^xsd:string ; a owl:Class ; rdfs:label "TOPP DTAExtractor"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002155 obo:IAO_0000115 "Merges several protein/peptide identification files into one file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002155"^^xsd:string ; a owl:Class ; rdfs:label "TOPP IDMerger"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002156 obo:IAO_0000115 "Converts identification engine file formats."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002156"^^xsd:string ; a owl:Class ; rdfs:label "TOPP IDFileConverter"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002157 obo:IAO_0000115 "Merges spectra from an LC/MS map, either by precursor or by RT blocks."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002157"^^xsd:string ; a owl:Class ; rdfs:label "TOPP SpectraMerger"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002158 obo:IAO_0000115 "Exports various XML formats to an mzTab file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002158"^^xsd:string ; a owl:Class ; rdfs:label "TOPP MzTabExporter"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002159 obo:IAO_0000115 "Annotates mass traces in centroided LC/MS maps."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002159"^^xsd:string ; a owl:Class ; rdfs:label "TOPP MassTraceExtractor"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002160 obo:IAO_0000115 "Correct the precursor entries of tandem MS scans."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002160"^^xsd:string ; a owl:Class ; rdfs:label "TOPP PrecursorMassCorrector"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002161 obo:IAO_0000115 "Performs precursor mz correction on centroided high resolution data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002161"^^xsd:string ; a owl:Class ; rdfs:label "TOPP HighResPrecursorMassCorrector"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002162 obo:IAO_0000115 "Computes an additive series to quantify a peptide in a set of samples."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002162"^^xsd:string ; a owl:Class ; rdfs:label "TOPP AdditiveSeries"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002163 obo:IAO_0000115 "Decharges and merges different feature charge variants of the same chemical entity."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002163"^^xsd:string ; a owl:Class ; rdfs:label "TOPP Decharger"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002164 obo:IAO_0000115 "Quantifies signals at given positions in (raw or picked) LC/MS maps."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002164"^^xsd:string ; a owl:Class ; rdfs:label "TOPP EICExtractor"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002165 obo:IAO_0000115 "Feature finder component of the TOPP software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002165"^^xsd:string ; a owl:Class ; rdfs:label "TOPP feature finder"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002166 obo:IAO_0000115 "Detects two-dimensional features in centroided LC-MS data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002166"^^xsd:string ; a owl:Class ; rdfs:label "TOPP FeatureFinderCentroided"^^xsd:string ; rdfs:subClassOf obo:MS_1002165 . obo:MS_1002167 obo:IAO_0000115 "Detects two-dimensional features in uncentroided LC-MS data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002167"^^xsd:string ; a owl:Class ; rdfs:label "TOPP FeatureFinderRaw"^^xsd:string ; rdfs:subClassOf obo:MS_1002165 . obo:MS_1002168 obo:IAO_0000115 "Detects two-dimensional features in uncentroided LC-MS data with a wavelet algorithm."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002168"^^xsd:string ; a owl:Class ; rdfs:label "TOPP FeatureFinderIsotopeWavelet"^^xsd:string ; rdfs:subClassOf obo:MS_1002165 . obo:MS_1002169 obo:IAO_0000115 "Detects two-dimensional features in centroided LC-MS data of metabolites."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002169"^^xsd:string ; a owl:Class ; rdfs:label "TOPP FeatureFinderMetabo"^^xsd:string ; rdfs:subClassOf obo:MS_1002165 . obo:MS_1002170 obo:IAO_0000115 "Quantifies features LC-MS/MS MRM data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002170"^^xsd:string ; a owl:Class ; rdfs:label "TOPP FeatureFinderMRM"^^xsd:string ; rdfs:subClassOf obo:MS_1002165 . obo:MS_1002171 obo:IAO_0000115 "Computes protein abundances from annotated feature/consensus maps."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002171"^^xsd:string ; a owl:Class ; rdfs:label "TOPP ProteinQuantifier"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002172 obo:IAO_0000115 "Normalizes maps of one consensus XML file (after linking)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002172"^^xsd:string ; a owl:Class ; rdfs:label "TOPP ConsensusMapNormalizer"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002173 obo:IAO_0000115 "Applies retention time transformations to maps."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002173"^^xsd:string ; a owl:Class ; rdfs:label "TOPP MapRTTransformer"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002174 obo:IAO_0000115 "Feature linker component of the TOPP software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002174"^^xsd:string ; a owl:Class ; rdfs:label "TOPP feature linker"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002175 obo:IAO_0000115 "Groups corresponding isotope-labeled features in a feature map."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002175"^^xsd:string ; a owl:Class ; rdfs:label "TOPP FeatureLinkerLabeled"^^xsd:string ; rdfs:subClassOf obo:MS_1002174 . obo:MS_1002176 obo:IAO_0000115 "Groups corresponding features from multiple maps."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002176"^^xsd:string ; a owl:Class ; rdfs:label "TOPP FeatureLinkerUnlabeled"^^xsd:string ; rdfs:subClassOf obo:MS_1002174 . obo:MS_1002177 obo:IAO_0000115 "Groups corresponding features from multiple maps using a quality threshold clustering approach."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002177"^^xsd:string ; a owl:Class ; rdfs:label "TOPP FeatureLinkerUnlabeledQT"^^xsd:string ; rdfs:subClassOf obo:MS_1002174 . obo:MS_1002178 obo:IAO_0000115 "Performs a peptide/protein identification with the CompNovo engine."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002178"^^xsd:string ; a owl:Class ; rdfs:label "TOPP CompNovo"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002179 obo:IAO_0000115 "Performs a peptide/protein identification with the CompNovo engine in collision-induced dissociation (CID) mode."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002179"^^xsd:string ; a owl:Class ; rdfs:label "TOPP CompNovoCID"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002180 obo:IAO_0000115 "Software adaptor to an external program in the TOPP software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002180"^^xsd:string ; a owl:Class ; rdfs:label "TOPP software adaptor"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002181 obo:IAO_0000115 "Identifies MS2 spectra using the external program Inspect."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002181"^^xsd:string ; a owl:Class ; rdfs:label "TOPP InspectAdapter"^^xsd:string ; rdfs:subClassOf obo:MS_1002180 . obo:MS_1002182 obo:IAO_0000115 "Identifies MS2 spectra using the external program Mascot."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002182"^^xsd:string ; a owl:Class ; rdfs:label "TOPP MascotAdapter"^^xsd:string ; rdfs:subClassOf obo:MS_1002180 . obo:MS_1002183 obo:IAO_0000115 "Identifies MS2 spectra using the online version of the external program Mascot."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002183"^^xsd:string ; a owl:Class ; rdfs:label "TOPP MascotAdapterOnline"^^xsd:string ; rdfs:subClassOf obo:MS_1002180 . obo:MS_1002184 obo:IAO_0000115 "Identifies MS2 spectra using the external program OMSSA."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002184"^^xsd:string ; a owl:Class ; rdfs:label "TOPP OMSSAAdapter"^^xsd:string ; rdfs:subClassOf obo:MS_1002180 . obo:MS_1002185 obo:IAO_0000115 "Identifies MS2 spectra using the external program PepNovo."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002185"^^xsd:string ; a owl:Class ; rdfs:label "TOPP PepNovoAdapter"^^xsd:string ; rdfs:subClassOf obo:MS_1002180 . obo:MS_1002186 obo:IAO_0000115 "Identifies MS2 spectra using the external program XTandem."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002186"^^xsd:string ; a owl:Class ; rdfs:label "TOPP XTandemAdapter"^^xsd:string ; rdfs:subClassOf obo:MS_1002180 . obo:MS_1002187 obo:IAO_0000115 "Identifies peptide MS2 spectra by spectral matching with a searchable spectral library."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002187"^^xsd:string ; a owl:Class ; rdfs:label "TOPP SpecLibSearcher"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002188 obo:IAO_0000115 "Computes a consensus identification from peptide identifications of several identification engines."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002188"^^xsd:string ; a owl:Class ; rdfs:label "TOPP ConsensusID"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002189 obo:IAO_0000115 "Resolves ambiguous annotations of features with peptide identifications."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002189"^^xsd:string ; a owl:Class ; rdfs:label "TOPP IDConflictResolver"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002190 obo:IAO_0000115 "Filters results from protein or peptide identification engines based on different criteria."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002190"^^xsd:string ; a owl:Class ; rdfs:label "TOPP IDFilter"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002191 obo:IAO_0000115 "Assigns protein/peptide identifications to feature or consensus features."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002191"^^xsd:string ; a owl:Class ; rdfs:label "TOPP IDMapper"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002192 obo:IAO_0000115 "Estimates posterior error probabilities using a mixture model."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002192"^^xsd:string ; a owl:Class ; rdfs:label "TOPP IDPosteriorErrorProbability"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002193 obo:IAO_0000115 "Calibrate Retention times of peptide hits to standards."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002193"^^xsd:string ; a owl:Class ; rdfs:label "TOPP IDRTCalibration"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002194 obo:IAO_0000115 "Refreshes the protein references for all peptide hits."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002194"^^xsd:string ; a owl:Class ; rdfs:label "TOPP PeptideIndexer"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002195 obo:IAO_0000115 "A tool for precursor ion selection based on identification results."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002195"^^xsd:string ; a owl:Class ; rdfs:label "TOPP PrecursorIonSelector"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002196 obo:IAO_0000115 "MRMMapper maps measured chromatograms (mzML) and the transitions used (TraML)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002196"^^xsd:string ; a owl:Class ; rdfs:label "TOPP MRMMapper"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002197 obo:IAO_0000115 "OpenSwath component of the TOPP software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002197"^^xsd:string ; a owl:Class ; rdfs:label "TOPP OpenSwath component"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002198 obo:IAO_0000115 "Picks peaks and finds features in an SRM experiment."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002198"^^xsd:string ; a owl:Class ; rdfs:label "TOPP OpenSwathAnalyzer"^^xsd:string ; rdfs:subClassOf obo:MS_1002197 . obo:MS_1002199 obo:IAO_0000115 "Extract chromatograms (XIC) from a MS2 map file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002199"^^xsd:string ; a owl:Class ; rdfs:label "TOPP OpenSwathChromatogramExtractor"^^xsd:string ; rdfs:subClassOf obo:MS_1002197 . obo:MS_1002200 obo:IAO_0000115 "Generates decoys according to different models for a specific TraML."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002200"^^xsd:string ; a owl:Class ; rdfs:label "TOPP OpenSwathDecoyGenerator"^^xsd:string ; rdfs:subClassOf obo:MS_1002197 . obo:MS_1002201 obo:IAO_0000115 "Converts a featureXML to a mProphet tsv (tab separated values)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002201"^^xsd:string ; a owl:Class ; rdfs:label "TOPP OpenSwathFeatureXMLToTSV"^^xsd:string ; rdfs:subClassOf obo:MS_1002197 . obo:MS_1002202 obo:IAO_0000115 "Generates a transformation file for retention time space into normalized space."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002202"^^xsd:string ; a owl:Class ; rdfs:label "TOPP OpenSwathRTNormalizer"^^xsd:string ; rdfs:subClassOf obo:MS_1002197 . obo:MS_1002203 obo:IAO_0000115 "Infer proteins from a list of (high-confidence) peptides."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002203"^^xsd:string ; a owl:Class ; rdfs:label "TOPP ProteinInference"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002204 obo:IAO_0000115 "Estimates the false discovery rate on peptide and protein level using decoy searches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002204"^^xsd:string ; a owl:Class ; rdfs:label "TOPP FalseDiscoveryRate"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002205 obo:IAO_0000115 "Converts, filters, and processes mass spectrometry data in variety of formats."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002205"^^xsd:string ; a owl:Class ; rdfs:label "ProteoWizard msconvert"^^xsd:string ; rdfs:subClassOf obo:MS_1000615 . obo:MS_1002206 obo:IAO_0000115 "Converts, filters, and processes identifications from shotgun proteomics experiments."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002206"^^xsd:string ; a owl:Class ; rdfs:label "ProteoWizard idconvert"^^xsd:string ; rdfs:subClassOf obo:MS_1000615 . obo:MS_1002207 obo:IAO_0000115 "Filters and processes protein sequence databases."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002207"^^xsd:string ; a owl:Class ; rdfs:label "ProteoWizard chainsaw"^^xsd:string ; rdfs:subClassOf obo:MS_1000615 . obo:MS_1002208 obo:IAO_0000115 "Filters, processes, and displays mass spectrometry data in a variety of ways."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002208"^^xsd:string ; a owl:Class ; rdfs:label "ProteoWizard msaccess"^^xsd:string ; rdfs:subClassOf obo:MS_1000615 . obo:MS_1002209 obo:IAO_0000115 "An interactive GUI application to view and filter mass spectrometry data in a variety of formats."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002209"^^xsd:string ; a owl:Class ; rdfs:label "ProteoWizard SeeMS"^^xsd:string ; rdfs:subClassOf obo:MS_1000615 . obo:MS_1002210 obo:IAO_0000115 "A quantitative software package designed for analysis of IPTL, TMT and iTRAQ data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002210"^^xsd:string ; a owl:Class ; rdfs:label "IsobariQ"^^xsd:string ; rdfs:subClassOf obo:MS_1001139, obo:MS_1001456 . obo:MS_1002211 obo:IAO_0000115 "The model incorporates data calibration (normalization), a model for the dependence of the variance on the mean intensity, and a variance stabilizing data transformation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002211"^^xsd:string ; a owl:Class ; rdfs:label "Variance stabilizing normalization"^^xsd:string ; rdfs:subClassOf obo:MS_1001861 . obo:MS_1002212 obo:IAO_0000115 "Quantification analysis using a labelling strategy where both peptide termini are labelled so that the peptides from different labelling schema are isobaric."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002212"^^xsd:string ; a owl:Class ; rdfs:label "IPTL quantitation analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1002009 . obo:MS_1002213 obo:IAO_0000115 "A protein identified by at least one unique (distinct, discrete) peptide (peptides are considered different only if they can be distinguished by evidence in mass spectrum)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002213"^^xsd:string ; a owl:Class ; rdfs:label "PAnalyzer:conclusive protein"^^xsd:string ; rdfs:subClassOf obo:MS_1001600, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002214 obo:IAO_0000115 "A member of a group of proteins sharing all peptides that are exclusive to the group (peptides are considered different only if they can be distinguished by evidence in mass spectrum)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002214"^^xsd:string ; a owl:Class ; rdfs:label "PAnalyzer:indistinguishable protein"^^xsd:string ; rdfs:subClassOf obo:MS_1001600, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002215 obo:IAO_0000115 "A protein sharing all its matched peptides with either conclusive or indistinguishable proteins (peptides are considered different only if they can be distinguished by evidence in mass spectrum)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002215"^^xsd:string ; a owl:Class ; rdfs:label "PAnalyzer:non-conclusive protein"^^xsd:string ; rdfs:subClassOf obo:MS_1001600, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002216 obo:IAO_0000115 "A protein sharing at least one peptide not matched to either conclusive or indistinguishable proteins (peptides are considered different only if they can be distinguished by evidence in mass spectrum)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002216"^^xsd:string ; a owl:Class ; rdfs:label "PAnalyzer:ambiguous group member"^^xsd:string ; rdfs:subClassOf obo:MS_1001600, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002217 obo:IAO_0000115 "A putative identified peptide issued from a decoy sequence database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002217"^^xsd:string ; a owl:Class ; rdfs:label "decoy peptide"^^xsd:string ; rdfs:subClassOf obo:MS_1001105, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002218 obo:IAO_0000115 "Collision energy at the start of the collision energy ramp in percent, normalized to the mass of the ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002218"^^xsd:string ; a owl:Class ; rdfs:label "percent collision energy ramp start"^^xsd:string ; rdfs:subClassOf obo:MS_1000138, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000187 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002219 obo:IAO_0000115 "Collision energy at the end of the collision energy ramp in percent, normalized to the mass of the ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002219"^^xsd:string ; a owl:Class ; rdfs:label "percent collision energy ramp end"^^xsd:string ; rdfs:subClassOf obo:MS_1000138, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000187 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002220 obo:IAO_0000115 "A web-based SRM assay design tool whose transitions are generated by mining the millions of identified peptide spectra held in the EBI's PRIDE database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002220"^^xsd:string ; a owl:Class ; rdfs:label "MRMaid"^^xsd:string ; rdfs:subClassOf obo:MS_1000871 . obo:MS_1002221 obo:IAO_0000115 "Score in MRMaid to indicate the expected performance of the peptide in SRM."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002221"^^xsd:string ; a owl:Class ; rdfs:label "MRMaid:peptide score"^^xsd:string ; rdfs:subClassOf obo:MS_1001105, obo:MS_1002363 . obo:MS_1002222 obo:IAO_0000115 "Attribute associated with a SRM transition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002222"^^xsd:string ; a owl:Class ; rdfs:label "SRM transition attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1000455, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000908 ] . obo:MS_1002223 obo:IAO_0000115 "Probability of detecting precursor when parent protein is present."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002223"^^xsd:string ; a owl:Class ; rdfs:label "precursor ion detection probability"^^xsd:string ; rdfs:subClassOf obo:MS_1002222, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002224 obo:IAO_0000115 "Probability of detecting product ion when precursor ion is present."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002224"^^xsd:string ; a owl:Class ; rdfs:label "product ion detection probability"^^xsd:string ; rdfs:subClassOf obo:MS_1002222, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002225 obo:IAO_0000115 "Average value of product ion intensity in a collection of identified spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002225"^^xsd:string ; a owl:Class ; rdfs:label "average product ion intensity"^^xsd:string ; rdfs:subClassOf obo:MS_1001226, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000131 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000132 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000814 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000905 ] . obo:MS_1002226 obo:IAO_0000115 "Standard deviation of product ion intensity in a collection of identified spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002226"^^xsd:string ; a owl:Class ; rdfs:label "product ion intensity standard deviation"^^xsd:string ; rdfs:subClassOf obo:MS_1001226, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000131 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000132 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000814 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000905 ] . obo:MS_1002227 obo:IAO_0000115 "The number of times the specific product ion has been observed in a series of SRM experiments."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002227"^^xsd:string ; a owl:Class ; rdfs:label "number of product ion observations"^^xsd:string ; rdfs:subClassOf obo:MS_1002222, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002228 obo:IAO_0000115 "The number of times the specific precursor ion has been observed in a series of SRM experiments."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002228"^^xsd:string ; a owl:Class ; rdfs:label "number of precursor ion observations"^^xsd:string ; rdfs:subClassOf obo:MS_1002222, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002229 obo:IAO_0000115 "Calculated relaxed significance when performing a decoy search for high-confidence peptides."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002229"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Mascot:Significance Middle"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002230 obo:IAO_0000115 "Calculated relaxed significance when performing a decoy search for medium-confidence peptides."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002230"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Mascot:Significance High"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002231 obo:IAO_0000115 "([A-Fa-f0-9]{8}-([A-Fa-f0-9]{4}-){3}[A-Fa-f0-9]{12})."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002231"^^xsd:string ; a owl:Class ; rdfs:label "regular expressions for a GUID"^^xsd:string ; rdfs:subClassOf obo:MS_1002479 . obo:MS_1002232 obo:IAO_0000115 "The default FDR calculator as globally unique identifier (GUID)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002232"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Default FDR calculator"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002231 ] . obo:MS_1002233 obo:IAO_0000115 "Flag indicating if low-resolution spectra are taken into consideration."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002233"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:SEQUEST:Low resolution spectra contained"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002234 obo:IAO_0000115 "Mass-to-charge ratio of a precursor ion selected for fragmentation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "selected ion m/z"^^xsd:string ; oboInOwl:id "MS:1002234"^^xsd:string ; a owl:Class ; rdfs:label "selected precursor m/z"^^xsd:string ; rdfs:subClassOf obo:MS_1000455, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002235 obo:IAO_0000115 "A score assigned to a single protein accession (modelled as ProteinDetectionHypothesis in mzIdentML), based on summed peptide level scores."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002235"^^xsd:string ; a owl:Class ; rdfs:label "ProteoGrouper:PDH score"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002236 obo:IAO_0000115 "A score assigned to a protein group (modelled as ProteinAmbiguityGroup in mzIdentML), based on all summed peptide level scores that have been assigned to the group as unique or razor peptides."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002236"^^xsd:string ; a owl:Class ; rdfs:label "ProteoGrouper:PAG score"^^xsd:string ; rdfs:subClassOf obo:MS_1002368, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002237 obo:IAO_0000115 "A library of Java routines for manipulating mzIdentML files."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002237"^^xsd:string ; a owl:Class ; rdfs:label "mzidLib"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002238 obo:IAO_0000115 "A converter for OMSSA OMX to mzIdentML."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002238"^^xsd:string ; a owl:Class ; rdfs:label "mzidLib:Omssa2Mzid"^^xsd:string ; rdfs:subClassOf obo:MS_1002237 . obo:MS_1002239 obo:IAO_0000115 "A converter for Tandem XML to mzIdentML."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002239"^^xsd:string ; a owl:Class ; rdfs:label "mzidLib:Tandem2Mzid"^^xsd:string ; rdfs:subClassOf obo:MS_1002237 . obo:MS_1002240 obo:IAO_0000115 "A converter for CSV files (following OMSSA CSV style) to mzIdentML."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002240"^^xsd:string ; a owl:Class ; rdfs:label "mzidLib:Csv2Mzid"^^xsd:string ; rdfs:subClassOf obo:MS_1002237 . obo:MS_1002241 obo:IAO_0000115 "A generic and parameterizable protein inference algorithm for mzIdentML files."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002241"^^xsd:string ; a owl:Class ; rdfs:label "mzidLib:ProteoGrouper"^^xsd:string ; rdfs:subClassOf obo:MS_1002237 . obo:MS_1002242 obo:IAO_0000115 "A routine for keeping only identifications passing a given threshold or setting passThreshold to true or false for SpectrumIdentificationItem or ProteinDetectionHypothesis in mzIdentML files."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002242"^^xsd:string ; a owl:Class ; rdfs:label "mzidLib:Thresholder"^^xsd:string ; rdfs:subClassOf obo:MS_1002237 . obo:MS_1002243 obo:IAO_0000115 "A routine for adding emPAI quantitative values to an mzIdentML file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002243"^^xsd:string ; a owl:Class ; rdfs:label "mzidLib:Perform emPAI on mzid"^^xsd:string ; rdfs:subClassOf obo:MS_1002237 . obo:MS_1002244 obo:IAO_0000115 "A routine for calculating local FDR, q-value and FDRScore for mzIdentML files, based on a decoy search."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002244"^^xsd:string ; a owl:Class ; rdfs:label "mzidLib:FalseDiscoveryRate"^^xsd:string ; rdfs:subClassOf obo:MS_1002237 . obo:MS_1002245 obo:IAO_0000115 "A tool for converting mzIdentML files to CSV format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002245"^^xsd:string ; a owl:Class ; rdfs:label "mzidLib:Mzidentml2Csv"^^xsd:string ; rdfs:subClassOf obo:MS_1002237 . obo:MS_1002246 obo:IAO_0000115 "A tool for combining results analysed in parallel in two or three search engines into a single mzIdentML file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002246"^^xsd:string ; a owl:Class ; rdfs:label "mzidLib:CombineSearchEngines"^^xsd:string ; rdfs:subClassOf obo:MS_1002237 . obo:MS_1002247 obo:IAO_0000115 "A tool for adding additional meta data from a FASTA file to DBSequence entries (sequence and description) in mzIdentML files."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002247"^^xsd:string ; a owl:Class ; rdfs:label "mzidLib:InsertMetaDataFromFasta"^^xsd:string ; rdfs:subClassOf obo:MS_1002237 . obo:MS_1002248 obo:IAO_0000115 "The SEQUEST result 'SpScore'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002248"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:spscore"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002249 obo:IAO_0000115 "The SEQUEST result 'SpRank'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002249"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:sprank"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002250 obo:IAO_0000115 "The SEQUEST result 'DeltaCnStar'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002250"^^xsd:string ; a owl:Class ; rdfs:label "SEQUEST:deltacnstar"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002251 obo:IAO_0000115 "Comet open-source sequence search engine developed at the University of Washington."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002251"^^xsd:string ; a owl:Class ; rdfs:label "Comet"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002252 obo:IAO_0000115 "The Comet result 'XCorr'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002252"^^xsd:string ; a owl:Class ; rdfs:label "Comet:xcorr"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002253 obo:IAO_0000115 "The Comet result 'DeltaCn'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002253"^^xsd:string ; a owl:Class ; rdfs:label "Comet:deltacn"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002254 obo:IAO_0000115 "The Comet result 'DeltaCnStar'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002254"^^xsd:string ; a owl:Class ; rdfs:label "Comet:deltacnstar"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002255 obo:IAO_0000115 "The Comet result 'SpScore'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002255"^^xsd:string ; a owl:Class ; rdfs:label "Comet:spscore"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002256 obo:IAO_0000115 "The Comet result 'SpRank'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002256"^^xsd:string ; a owl:Class ; rdfs:label "Comet:sprank"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002257 obo:IAO_0000115 "The Comet result 'Expectation value'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002257"^^xsd:string ; a owl:Class ; rdfs:label "Comet:expectation value"^^xsd:string ; rdfs:subClassOf obo:MS_1001153, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002258 obo:IAO_0000115 "The Comet result 'Matched Ions'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002258"^^xsd:string ; a owl:Class ; rdfs:label "Comet:matched ions"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002259 obo:IAO_0000115 "The Comet result 'Total Ions'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002259"^^xsd:string ; a owl:Class ; rdfs:label "Comet:total ions"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002260 obo:IAO_0000115 "False-discovery rate threshold for peptide-spectrum matches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002260"^^xsd:string ; a owl:Class ; rdfs:label "PSM:FDR threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002483, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002261 obo:IAO_0000115 "Byonic search engine from Protein Metrics."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002261"^^xsd:string ; a owl:Class ; rdfs:label "Byonic"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002262 obo:IAO_0000115 "The Byonic score is the primary indicator of PSM correctness. The Byonic score reflects the absolute quality of the peptide-spectrum match, not the relative quality compared to other candidate peptides. Byonic scores range from 0 to about 1000, with 300 a good score, 400 a very good score, and PSMs with scores over 500 almost sure to be correct."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002262"^^xsd:string ; a owl:Class ; rdfs:label "Byonic:Score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002263 obo:IAO_0000115 "The drop in Byonic score from the top-scoring peptide to the next peptide with distinct sequence. In this computation, the same peptide with different modifications is not considered distinct."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002263"^^xsd:string ; a owl:Class ; rdfs:label "Byonic:Delta Score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002264 obo:IAO_0000115 "The drop in Byonic score from the top-scoring peptide to the next peptide different in any way, including placement of modifications. DeltaMod gives an indication of whether modifications are confidently localized; DeltaMod over 10.0 means that there is high likelihood that all modification placements are correct."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002264"^^xsd:string ; a owl:Class ; rdfs:label "Byonic:DeltaMod Score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002265 obo:IAO_0000115 "Byonic posterior error probability."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002265"^^xsd:string ; a owl:Class ; rdfs:label "Byonic:PEP"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002109 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002266 obo:IAO_0000115 "The log p-value of the PSM. This is the log of the probability that the PSM with such a score and delta would arise by chance in a search of this size (the size of the protein database, as expanded by the modification rules). A log p-value of -3.0 should happen by chance on only one of a thousand spectra. Caveat: it is very hard to compute a p-value that works for all searches and all spectra, so read Byonic p-values with a certain amount of skepticism."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002266"^^xsd:string ; a owl:Class ; rdfs:label "Byonic:Peptide LogProb"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002109 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002267 obo:IAO_0000115 "The log p-value of the protein."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002267"^^xsd:string ; a owl:Class ; rdfs:label "Byonic:Protein LogProb"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002109 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002268 obo:IAO_0000115 "Best (most negative) log p-value of an individual PSM."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002268"^^xsd:string ; a owl:Class ; rdfs:label "Byonic:Best LogProb"^^xsd:string ; rdfs:subClassOf obo:MS_1001116, obo:MS_1001153, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002109 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002269 obo:IAO_0000115 "Best (largest) Byonic score of a PSM."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002269"^^xsd:string ; a owl:Class ; rdfs:label "Byonic:Best Score"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002270 obo:IAO_0000115 "A technique by which molecules are separated by chemical and physical properties such as hydrophobicity or vapour pressure."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002270"^^xsd:string ; a owl:Class ; rdfs:label "chromatography separation"^^xsd:string ; rdfs:subClassOf obo:MS_1000857 . obo:MS_1002271 obo:IAO_0000115 "Liquid chromatography (LC) is a separation technique in which the mobile phase is a liquid."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002271"^^xsd:string ; a owl:Class ; rdfs:label "liquid chromatography separation"^^xsd:string ; rdfs:subClassOf obo:MS_1002270 . obo:MS_1002272 obo:IAO_0000115 "Gas chromatography (GC) is a separation technique in which the mobile phase is a gas."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002272"^^xsd:string ; a owl:Class ; rdfs:label "gas chromatography separation"^^xsd:string ; rdfs:subClassOf obo:MS_1002270 . obo:MS_1002273 obo:IAO_0000115 "Detector potential difference in volts."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002273"^^xsd:string ; a owl:Class ; rdfs:label "detector potential"^^xsd:string ; rdfs:subClassOf obo:MS_1000481, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000218 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002274 obo:IAO_0000115 "Waters quadrupole based SQ Detector 2."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002274"^^xsd:string ; a owl:Class ; rdfs:label "SQ Detector 2"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1002275 obo:IAO_0000115 "Waters oa-ToF based Xevo G2-S Tof."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002275"^^xsd:string ; a owl:Class ; rdfs:label "Xevo G2-S Tof"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1002276 obo:IAO_0000115 "Waters oa-ToF based Xevo G2-S QTof."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002276"^^xsd:string ; a owl:Class ; rdfs:label "Xevo G2-S QTof"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1002277 obo:IAO_0000115 "Waters AutoSpec Premier magnetic sector instrument."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002277"^^xsd:string ; a owl:Class ; rdfs:label "AutoSpec Premier"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1002278 obo:IAO_0000115 "LECO nominal mass resolution time-of-flight GC mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002278"^^xsd:string ; a owl:Class ; rdfs:label "Pegasus III"^^xsd:string ; rdfs:subClassOf obo:MS_1001800 . obo:MS_1002279 obo:IAO_0000115 "Bruker Daltonics' maXis 4G: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002279"^^xsd:string ; a owl:Class ; rdfs:label "maXis 4G"^^xsd:string ; rdfs:subClassOf obo:MS_1001547 . obo:MS_1002280 obo:IAO_0000115 "Bruker Daltonics' compact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002280"^^xsd:string ; a owl:Class ; rdfs:label "compact"^^xsd:string ; rdfs:subClassOf obo:MS_1001536 . obo:MS_1002281 obo:IAO_0000115 "Selected Reaction Monitoring feature level quantitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002281"^^xsd:string ; a owl:Class ; rdfs:label "SRM feature level quantitation"^^xsd:string ; rdfs:subClassOf obo:MS_1001838 . obo:MS_1002282 obo:IAO_0000115 "Selected Reaction Monitoring peptide level quantitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002282"^^xsd:string ; a owl:Class ; rdfs:label "SRM peptide level quantitation"^^xsd:string ; rdfs:subClassOf obo:MS_1001838 . obo:MS_1002283 obo:IAO_0000115 "Selected Reaction Monitoring protein level quantitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002283"^^xsd:string ; a owl:Class ; rdfs:label "SRM protein level quantitation"^^xsd:string ; rdfs:subClassOf obo:MS_1001838 . obo:MS_1002284 obo:IAO_0000115 "Selected Reaction Monitoring proteingroup level quantitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002284"^^xsd:string ; a owl:Class ; rdfs:label "SRM proteingroup level quantitation"^^xsd:string ; rdfs:subClassOf obo:MS_1001838 . obo:MS_1002285 obo:IAO_0000115 "A suite of open source tools for the processing of MS2 proteomics data developed by the Seattle Proteome Center at the Institute for Systems Biology."^^xsd:string ; oboInOwl:hasExactSynonym "TPP"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002285"^^xsd:string ; a owl:Class ; rdfs:label "Trans-Proteomic Pipeline"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002286 obo:IAO_0000115 "A software program that is a component of the Trans-Proteomic Pipeline."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002286"^^xsd:string ; a owl:Class ; rdfs:label "Trans-Proteomic Pipeline software"^^xsd:string ; rdfs:subClassOf obo:MS_1001456, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002285 ] . obo:MS_1002287 obo:IAO_0000115 "A program in the TPP that calculates PSM probabilities for MS2 proteomics data searched with any of the supported sequence or spectral library search engines via the pepXML format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002287"^^xsd:string ; a owl:Class ; rdfs:label "PeptideProphet"^^xsd:string ; rdfs:subClassOf obo:MS_1002286 . obo:MS_1002288 obo:IAO_0000115 "A program in the TPP that calculates distinct peptide probabilities based on several lines of corroborating evidence including search results from multiple search engines via the pepXML format."^^xsd:string ; oboInOwl:hasExactSynonym "InterProphet"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002288"^^xsd:string ; a owl:Class ; rdfs:label "iProphet"^^xsd:string ; rdfs:subClassOf obo:MS_1002286 . obo:MS_1002289 obo:IAO_0000115 "A program in the TPP that calculates protein-level probabilities based on input PSM or peptide-level probabilities from PeptideProphet or iProphet. The output is written in the protXML format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002289"^^xsd:string ; a owl:Class ; rdfs:label "ProteinProphet"^^xsd:string ; rdfs:subClassOf obo:MS_1002286 . obo:MS_1002290 obo:IAO_0000115 "A program in the TPP that calculates PSM-level abundances based on 2-channel isotope-labelled data such as ICAT, SILAC, etc."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002290"^^xsd:string ; a owl:Class ; rdfs:label "XPRESS"^^xsd:string ; rdfs:subClassOf obo:MS_1002286 . obo:MS_1002291 obo:IAO_0000115 "A program in the TPP that calculates PSM, peptide, and protein-level abundances based on N-channel isobaric label peptide data such as iTRAQ, TMT, etc."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002291"^^xsd:string ; a owl:Class ; rdfs:label "Libra"^^xsd:string ; rdfs:subClassOf obo:MS_1002286 . obo:MS_1002292 obo:IAO_0000115 "A program in the TPP that calculates PTM localization probabilities by re-analyzing the peaks that are available to distinguish between possible modification sites."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002292"^^xsd:string ; a owl:Class ; rdfs:label "PTMProphet"^^xsd:string ; rdfs:subClassOf obo:MS_1002286 . obo:MS_1002293 obo:IAO_0000115 "Bruker Daltonics' SCION series."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002293"^^xsd:string ; a owl:Class ; rdfs:label "Bruker Daltonics SCION series"^^xsd:string ; rdfs:subClassOf obo:MS_1000122 . obo:MS_1002294 obo:IAO_0000115 "Bruker Daltonics' EVOQ series."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002294"^^xsd:string ; a owl:Class ; rdfs:label "Bruker Daltonics EVOQ series"^^xsd:string ; rdfs:subClassOf obo:MS_1000122 . obo:MS_1002295 obo:IAO_0000115 "Bruker Daltonics' SCION SQ: GC-single quadrupole."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002295"^^xsd:string ; a owl:Class ; rdfs:label "SCION SQ"^^xsd:string ; rdfs:subClassOf obo:MS_1002293 . obo:MS_1002296 obo:IAO_0000115 "Bruker Daltonics' SCION TQ: GC-triple quadrupole."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002296"^^xsd:string ; a owl:Class ; rdfs:label "SCION TQ"^^xsd:string ; rdfs:subClassOf obo:MS_1002293 . obo:MS_1002297 obo:IAO_0000115 "Bruker Daltonics' EVOQ Elite: LC-triple quadrupole."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002297"^^xsd:string ; a owl:Class ; rdfs:label "EVOQ Elite"^^xsd:string ; rdfs:subClassOf obo:MS_1002294 . obo:MS_1002298 obo:IAO_0000115 "Bruker Daltonics' EVOQ Qube: LC-triple quadrupole."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002298"^^xsd:string ; a owl:Class ; rdfs:label "EVOQ Qube"^^xsd:string ; rdfs:subClassOf obo:MS_1002294 . obo:MS_1002299 obo:IAO_0000115 "Bruker Daltonics' micrOTOF-Q III: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002299"^^xsd:string ; a owl:Class ; rdfs:label "micrOTOF-Q III"^^xsd:string ; rdfs:subClassOf obo:MS_1001536 . obo:MS_1002300 obo:IAO_0000115 "Bruker Daltonics' amaZon Speed ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR, GC-APCI, CaptiveSpray."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002300"^^xsd:string ; a owl:Class ; rdfs:label "amaZon Speed ETD"^^xsd:string ; rdfs:subClassOf obo:MS_1001545 . obo:MS_1002301 obo:IAO_0000115 "Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002301"^^xsd:string ; a owl:Class ; rdfs:label "amaZon Speed"^^xsd:string ; rdfs:subClassOf obo:MS_1001545 . obo:MS_1002302 obo:IAO_0000115 "Bruker Container raw file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002302"^^xsd:string ; a owl:Class ; rdfs:label "Bruker Container format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1002303 obo:IAO_0000115 "Native identifier (UUID)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002303"^^xsd:string ; a owl:Class ; rdfs:label "Bruker Container nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002304 obo:IAO_0000115 "Domain range of a numerical value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002304"^^xsd:string ; a owl:Class ; rdfs:label "domain range"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_0000000 ] . obo:MS_1002305 obo:IAO_0000115 "Value range for probabilities."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002305"^^xsd:string ; a owl:Class ; rdfs:label "value between 0 and 1 inclusive"^^xsd:string ; rdfs:subClassOf obo:MS_1002304 . obo:MS_1002306 obo:IAO_0000115 "Positive value range."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002306"^^xsd:string ; a owl:Class ; rdfs:label "value greater than zero"^^xsd:string ; rdfs:subClassOf obo:MS_1002304 . obo:MS_1002307 obo:IAO_0000115 "Type of fragment ion based on where the backbone breaks, such as a y ion or a c ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002307"^^xsd:string ; a owl:Class ; rdfs:label "fragmentation ion type"^^xsd:string ; rdfs:subClassOf obo:MS_1001221 . obo:MS_1002308 obo:IAO_0000115 "A detector using a fluorescent signal after excitation with light."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002308"^^xsd:string ; a owl:Class ; rdfs:label "fluorescence detector"^^xsd:string ; rdfs:subClassOf obo:MS_1000026 . obo:MS_1002309 obo:IAO_0000115 "The absolute value of the log-base10 of the Byonic posterior error probability (PEP) of the PSM."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002309"^^xsd:string ; a owl:Class ; rdfs:label "Byonic: Peptide AbsLogProb"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002310 obo:IAO_0000115 "The absolute value of the log-base10 of the Byonic posterior error probability (PEP) of the protein."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002310"^^xsd:string ; a owl:Class ; rdfs:label "Byonic: Protein AbsLogProb"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002311 obo:IAO_0000115 "The absolute value of the log-base10 Byonic two-dimensional posterior error probability (PEP) of the PSM. The two-dimensional PEP takes into account protein ranking information as well as PSM information."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002311"^^xsd:string ; a owl:Class ; rdfs:label "Byonic: Peptide AbsLogProb2D"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002312 obo:IAO_0000115 "Compression using MS-Numpress linear prediction compression."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002312"^^xsd:string ; a owl:Class ; rdfs:label "MS-Numpress linear prediction compression"^^xsd:string ; rdfs:subClassOf obo:MS_1000572 . obo:MS_1002313 obo:IAO_0000115 "Compression using MS-Numpress positive integer compression."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002313"^^xsd:string ; a owl:Class ; rdfs:label "MS-Numpress positive integer compression"^^xsd:string ; rdfs:subClassOf obo:MS_1000572 . obo:MS_1002314 obo:IAO_0000115 "Compression using MS-Numpress short logged float compression."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002314"^^xsd:string ; a owl:Class ; rdfs:label "MS-Numpress short logged float compression"^^xsd:string ; rdfs:subClassOf obo:MS_1000572 . obo:MS_1002315 obo:IAO_0000115 "Indicates a consensus result from several search engine runs."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002315"^^xsd:string ; a owl:Class ; rdfs:label "consensus result"^^xsd:string ; rdfs:subClassOf obo:MS_1001405 . obo:MS_1002316 obo:IAO_0000115 "Strict confidence probability score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002316"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Amanda:high confidence threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002317 obo:IAO_0000115 "Relaxed confidence probability score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002317"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Amanda:middle confidence threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002318 obo:IAO_0000115 "Flag indicating automatic estimation of the workload level."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002318"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:automatic workload"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002319 obo:IAO_0000115 "The Amanda score of the scoring function for a PSM."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002319"^^xsd:string ; a owl:Class ; rdfs:label "Amanda:AmandaScore"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002320 obo:IAO_0000115 "Maximum dynamic modifications per PSM."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002320"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:max differential modifications"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002321 obo:IAO_0000115 "Maximum equal modifications per PSM."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002321"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:max equal modifications"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002322 obo:IAO_0000115 "Minimum peptide length."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002322"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:min peptide length"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002323 obo:IAO_0000115 "Maximum peptide length."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002323"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:max peptide length"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002324 obo:IAO_0000115 "Maximum number of same neutral losses."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002324"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:max number neutral loss"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002325 obo:IAO_0000115 "Max number of same neutral losses of modifications."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002325"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:max number neutral loss modifications"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002326 obo:IAO_0000115 "Flag for usage of flanking ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002326"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:use flanking ions"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002327 obo:IAO_0000115 "The maximum number of possible equal modifications per PSM."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002327"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:max number of same modifs"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002328 obo:IAO_0000115 "Defines whether a simple deisotoping shall be performed."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002328"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:perform deisotoping"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002329 obo:IAO_0000115 "Specifies the fragment ions and neutral losses that are calculated."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002329"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:ion settings"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002330 obo:IAO_0000115 "OBSOLETE ProteomeDiscoverer's 3rd static post-translational modification (PTM) input parameter."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002330"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use ProteomeDiscoverer:Static Modification (MS:1001645) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:3. Static Modification"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1002331 obo:IAO_0000115 "OBSOLETE ProteomeDiscoverer's 5th dynamic post-translational modification (PTM) input parameter."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002331"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead."^^xsd:string ; rdfs:label "ProteomeDiscoverer:5. Dynamic Modification"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1002332 obo:IAO_0000115 "The scientist responsible for personnel, grants, and instrumentation in a functional laboratory group."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002332"^^xsd:string ; a owl:Class ; rdfs:label "lab head"^^xsd:string ; rdfs:subClassOf obo:MS_1002033 . obo:MS_1002333 obo:IAO_0000115 "Computer software primarily designed to convert data represented in one format to another format, sometimes with minor data alterations in the process."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002333"^^xsd:string ; a owl:Class ; rdfs:label "conversion software"^^xsd:string ; rdfs:subClassOf obo:MS_1001457 . obo:MS_1002334 obo:IAO_0000115 "Java software designed to convert one of several proteomics identification results formats into mzIdentML or PRIDE XML."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002334"^^xsd:string ; a owl:Class ; rdfs:label "ProCon"^^xsd:string ; rdfs:subClassOf obo:MS_1002333 . obo:MS_1002335 obo:IAO_0000115 "Java software designed to convert one of several proteomics identification results formats into PRIDE XML."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002335"^^xsd:string ; a owl:Class ; rdfs:label "PRIDE Converter2"^^xsd:string ; rdfs:subClassOf obo:MS_1002333 . obo:MS_1002336 obo:IAO_0000115 "Amanda scoring system for PSM identification."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002336"^^xsd:string ; a owl:Class ; rdfs:label "Amanda"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002337 obo:IAO_0000115 "Andromeda is a peptide search engine."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002337"^^xsd:string ; a owl:Class ; rdfs:label "Andromeda"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002338 obo:IAO_0000115 "The probability based score of the Andromeda search engine."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002338"^^xsd:string ; a owl:Class ; rdfs:label "Andromeda:score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002339 obo:IAO_0000115 "Estimation of global false discovery rate of peptides with a post-translational modification."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002339"^^xsd:string ; a owl:Class ; rdfs:label "site:global FDR"^^xsd:string ; rdfs:subClassOf obo:MS_1001405, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002340 obo:IAO_0000115 "Tag that can be added to a ProteomeXchange dataset, to enable the grouping of datasets. One tag can be used for indicating that a given dataset is part of a bigger project, like e.g. the Human Proteome Project."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002340"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeXchange project tag"^^xsd:string ; rdfs:subClassOf obo:MS_1000878, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002341 obo:IAO_0000115 "A putative identified peptide found in a second-pass search of protein sequences selected from a first-pass search."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002341"^^xsd:string ; a owl:Class ; rdfs:label "second-pass peptide identification"^^xsd:string ; rdfs:subClassOf obo:MS_1001105, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002342 obo:IAO_0000115 "A framework for differential analysis of mass spectrometry data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002342"^^xsd:string ; a owl:Class ; rdfs:label "MZmine"^^xsd:string ; rdfs:subClassOf obo:MS_1001456, obo:MS_1001457 . obo:MS_1002343 obo:IAO_0000115 "OBSOLETE Stability type of the ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002343"^^xsd:string ; a owl:Class ; rdfs:comment "This child of the former purgatory term ion was made obsolete."^^xsd:string ; rdfs:label "ion stability type"^^xsd:string ; owl:deprecated true . obo:MS_1002344 obo:IAO_0000115 "Modular Application Toolkit for Chromatography Mass-Spectrometry is an application framework mainly for developers."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002344"^^xsd:string ; a owl:Class ; rdfs:label "Maltcms"^^xsd:string ; rdfs:subClassOf obo:MS_1001456, obo:MS_1001457 . obo:MS_1002345 obo:IAO_0000115 "Attribute of a single peptide-spectrum match."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002345"^^xsd:string ; a owl:Class ; rdfs:label "PSM-level attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1002694 . obo:MS_1002346 obo:IAO_0000115 "Protein group level information."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002346"^^xsd:string ; a owl:Class ; rdfs:label "protein group-level identification attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1002694 . obo:MS_1002347 obo:IAO_0000115 "Identification confidence metric for a peptide spectrum match."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002347"^^xsd:string ; a owl:Class ; rdfs:label "PSM-level identification statistic"^^xsd:string ; rdfs:subClassOf obo:MS_1002345 . obo:MS_1002348 obo:IAO_0000115 "Identification confidence metric for a protein group."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002348"^^xsd:string ; a owl:Class ; rdfs:label "protein group-level identification statistic"^^xsd:string ; rdfs:subClassOf obo:MS_1002346 . obo:MS_1002349 obo:IAO_0000115 "Positive value range less than or equal to 1."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002349"^^xsd:string ; a owl:Class ; rdfs:label "value greater than zero but less than or equal to one"^^xsd:string ; rdfs:subClassOf obo:MS_1002304 . obo:MS_1002350 obo:IAO_0000115 "Estimation of the global false discovery rate of peptide spectrum matches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002350"^^xsd:string ; a owl:Class ; rdfs:label "PSM-level global FDR"^^xsd:string ; rdfs:subClassOf obo:MS_1002701, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002351 obo:IAO_0000115 "Estimation of the local false discovery rate of peptide spectrum matches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002351"^^xsd:string ; a owl:Class ; rdfs:label "PSM-level local FDR"^^xsd:string ; rdfs:subClassOf obo:MS_1002347, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002352 obo:IAO_0000115 "Estimation of the p-value for peptide spectrum matches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002352"^^xsd:string ; a owl:Class ; rdfs:label "PSM-level p-value"^^xsd:string ; rdfs:subClassOf obo:MS_1002347, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002353 obo:IAO_0000115 "Estimation of the e-value for peptide spectrum matches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002353"^^xsd:string ; a owl:Class ; rdfs:label "PSM-level e-value"^^xsd:string ; rdfs:subClassOf obo:MS_1002347, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002306 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002354 obo:IAO_0000115 "Estimation of the q-value for peptide spectrum matches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002354"^^xsd:string ; a owl:Class ; rdfs:label "PSM-level q-value"^^xsd:string ; rdfs:subClassOf obo:MS_1002347, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002355 obo:IAO_0000115 "mzidLibrary FDRScore for peptide spectrum matches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002355"^^xsd:string ; a owl:Class ; rdfs:label "PSM-level FDRScore"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002349 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002356 obo:IAO_0000115 "mzidLibrary Combined FDRScore for peptide spectrum matches specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002356"^^xsd:string ; a owl:Class ; rdfs:label "PSM-level combined FDRScore"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002349 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002357 obo:IAO_0000115 "Probability that the reported peptide ion is truly responsible for some or all of the components of the specified mass spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002357"^^xsd:string ; a owl:Class ; rdfs:label "PSM-level probability"^^xsd:string ; rdfs:subClassOf obo:MS_1002347, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002358 obo:IAO_0000115 "Search engine specific distinct peptide score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002358"^^xsd:string ; a owl:Class ; rdfs:label "search engine specific peptide sequence-level identification statistic"^^xsd:string ; rdfs:subClassOf obo:MS_1001092 . obo:MS_1002359 obo:IAO_0000115 "Estimation of the local false discovery rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002359"^^xsd:string ; a owl:Class ; rdfs:label "peptide sequence-level local FDR"^^xsd:string ; rdfs:subClassOf obo:MS_1001092, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002360 obo:IAO_0000115 "MzidLibrary FDRScore for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002360"^^xsd:string ; a owl:Class ; rdfs:label "distinct peptide-level FDRScore"^^xsd:string ; rdfs:subClassOf obo:MS_1002358, obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002349 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002361 obo:IAO_0000115 "Combined FDRScore for peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry) specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given peptide, used for integrating results from these distinct pools."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002361"^^xsd:string ; a owl:Class ; rdfs:label "distinct peptide-level combined FDRScore"^^xsd:string ; rdfs:subClassOf obo:MS_1002358, obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002349 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002362 obo:IAO_0000115 "Probability that the reported distinct peptide sequence (irrespective of mass modifications) has been correctly identified via the referenced PSMs."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002362"^^xsd:string ; a owl:Class ; rdfs:label "peptide sequence-level probability"^^xsd:string ; rdfs:subClassOf obo:MS_1001092, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002363 obo:IAO_0000115 "Search engine specific protein scores."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002363"^^xsd:string ; a owl:Class ; rdfs:label "search engine specific score for proteins"^^xsd:string ; rdfs:subClassOf obo:MS_1001116 . obo:MS_1002364 obo:IAO_0000115 "Estimation of the local false discovery rate of proteins."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002364"^^xsd:string ; a owl:Class ; rdfs:label "protein-level local FDR"^^xsd:string ; rdfs:subClassOf obo:MS_1001116, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002365 obo:IAO_0000115 "MzidLibrary FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002365"^^xsd:string ; a owl:Class ; rdfs:label "FDRScore for proteins"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002349 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002366 obo:IAO_0000115 "MzidLibrary Combined FDRScore for proteins."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002366"^^xsd:string ; a owl:Class ; rdfs:label "combined FDRScore for proteins"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002349 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002367 obo:IAO_0000115 "Probability that a specific protein sequence has been correctly identified from the PSM and distinct peptide evidence, and based on the available protein sequences presented to the analysis software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002367"^^xsd:string ; a owl:Class ; rdfs:label "probability for proteins"^^xsd:string ; rdfs:subClassOf obo:MS_1001116, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002368 obo:IAO_0000115 "Search engine specific protein group scores."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002368"^^xsd:string ; a owl:Class ; rdfs:label "search engine specific score for protein groups"^^xsd:string ; rdfs:subClassOf obo:MS_1002348 . obo:MS_1002369 obo:IAO_0000115 "Estimation of the global false discovery rate of protein groups."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002369"^^xsd:string ; a owl:Class ; rdfs:label "protein group-level global FDR"^^xsd:string ; rdfs:subClassOf obo:MS_1002706, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002370 obo:IAO_0000115 "Estimation of the local false discovery rate of protein groups."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002370"^^xsd:string ; a owl:Class ; rdfs:label "protein group-level local FDR"^^xsd:string ; rdfs:subClassOf obo:MS_1002348, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002371 obo:IAO_0000115 "Estimation of the p-value for protein groups."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002371"^^xsd:string ; a owl:Class ; rdfs:label "protein group-level p-value"^^xsd:string ; rdfs:subClassOf obo:MS_1002348, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002372 obo:IAO_0000115 "Estimation of the e-value for protein groups."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002372"^^xsd:string ; a owl:Class ; rdfs:label "protein group-level e-value"^^xsd:string ; rdfs:subClassOf obo:MS_1002348, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002306 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002373 obo:IAO_0000115 "Estimation of the q-value for protein groups."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002373"^^xsd:string ; a owl:Class ; rdfs:label "protein group-level q-value"^^xsd:string ; rdfs:subClassOf obo:MS_1002348, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002374 obo:IAO_0000115 "mzidLibrary FDRScore for protein groups."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002374"^^xsd:string ; a owl:Class ; rdfs:label "protein group-level FDRScore"^^xsd:string ; rdfs:subClassOf obo:MS_1002368, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002349 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002375 obo:IAO_0000115 "mzidLibrary Combined FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002375"^^xsd:string ; a owl:Class ; rdfs:label "protein group-level combined FDRScore"^^xsd:string ; rdfs:subClassOf obo:MS_1002368, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002349 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002376 obo:IAO_0000115 "Probability that at least one of the members of a group of protein sequences has been correctly identified from the PSM and distinct peptide evidence, and based on the available protein sequences presented to the analysis software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002376"^^xsd:string ; a owl:Class ; rdfs:label "protein group-level probability"^^xsd:string ; rdfs:subClassOf obo:MS_1002348, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002377 obo:IAO_0000115 "Specifies the threshold value for relaxed scoring."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002377"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Relaxed Score Threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002378 obo:IAO_0000115 "Specifies the threshold value for strict scoring."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002378"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Strict Score Threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002379 obo:IAO_0000115 "Cut off score for storing peptides that do not belong to a protein."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002379"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Peptide Without Protein Cut Off Score"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002380 obo:IAO_0000115 "Estimation of the false localization rate for modification site assignment."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002380"^^xsd:string ; a owl:Class ; rdfs:label "false localization rate"^^xsd:string ; rdfs:subClassOf obo:MS_1001405, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002381 obo:IAO_0000115 "Software for automated LC-MALDI analysis and reporting."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002381"^^xsd:string ; a owl:Class ; rdfs:label "MALDI Solutions LC-MALDI"^^xsd:string ; rdfs:subClassOf obo:MS_1001455, obo:MS_1001456, obo:MS_1001457, obo:MS_1001557 . obo:MS_1002382 obo:IAO_0000115 "Shimadzu MALDI-7090: MALDI-TOF-TOF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002382"^^xsd:string ; a owl:Class ; rdfs:label "Shimadzu MALDI-7090"^^xsd:string ; rdfs:subClassOf obo:MS_1000602 . obo:MS_1002383 obo:IAO_0000115 "SCiLS software for data acquisition and analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002383"^^xsd:string ; a owl:Class ; rdfs:label "SCiLS software"^^xsd:string ; rdfs:subClassOf obo:MS_1000531 . obo:MS_1002384 obo:IAO_0000115 "SCiLS Lab software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002384"^^xsd:string ; a owl:Class ; rdfs:label "SCiLS Lab"^^xsd:string ; rdfs:subClassOf obo:MS_1001456, obo:MS_1001457, obo:MS_1002383 . obo:MS_1002385 obo:IAO_0000115 "SCiLS Lab file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002385"^^xsd:string ; a owl:Class ; rdfs:label "SCiLS Lab format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1002386 obo:IAO_0000115 "Preprocessing software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002386"^^xsd:string ; a owl:Class ; rdfs:label "preprocessing software"^^xsd:string ; rdfs:subClassOf obo:MS_1001457 . obo:MS_1002387 obo:IAO_0000115 "PIA - Protein Inference Algorithms, a toolbox for protein inference and identification analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002387"^^xsd:string ; a owl:Class ; rdfs:label "PIA"^^xsd:string ; rdfs:subClassOf obo:MS_1001456, obo:MS_1002414 . obo:MS_1002388 obo:IAO_0000115 "A compilation of search engine results in the PIA XML format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002388"^^xsd:string ; a owl:Class ; rdfs:label "PIA XML format"^^xsd:string ; rdfs:subClassOf obo:MS_1001040 . obo:MS_1002389 obo:IAO_0000115 "A parameter set for a single PIA analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002389"^^xsd:string ; a owl:Class ; rdfs:label "PIA workflow parameter"^^xsd:string ; rdfs:subClassOf obo:MS_1001302, obo:MS_1002105 . obo:MS_1002390 obo:IAO_0000115 "Indicates whether the FDR score was calculated for the input file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002390"^^xsd:string ; a owl:Class ; rdfs:label "PIA:FDRScore calculated"^^xsd:string ; rdfs:subClassOf obo:MS_1002389, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002391 obo:IAO_0000115 "Indicates whether the combined FDR score was calculated for the PIA compilation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002391"^^xsd:string ; a owl:Class ; rdfs:label "PIA:Combined FDRScore calculated"^^xsd:string ; rdfs:subClassOf obo:MS_1002389, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002392 obo:IAO_0000115 "Indicates whether PSM sets were created."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002392"^^xsd:string ; a owl:Class ; rdfs:label "PIA:PSM sets created"^^xsd:string ; rdfs:subClassOf obo:MS_1002389, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002393 obo:IAO_0000115 "The number of top identifications per spectrum used for the FDR calculation, 0 means all."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002393"^^xsd:string ; a owl:Class ; rdfs:label "PIA:used top identifications for FDR"^^xsd:string ; rdfs:subClassOf obo:MS_1002389, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ] . obo:MS_1002394 obo:IAO_0000115 "The score given to a protein by any protein inference."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002394"^^xsd:string ; a owl:Class ; rdfs:label "PIA:protein score"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002395 obo:IAO_0000115 "The used algorithm for the protein inference using PIA."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002395"^^xsd:string ; a owl:Class ; rdfs:label "PIA:protein inference"^^xsd:string ; rdfs:subClassOf obo:MS_1002389, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002396 obo:IAO_0000115 "A filter used by PIA for the protein inference."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002396"^^xsd:string ; a owl:Class ; rdfs:label "PIA:protein inference filter"^^xsd:string ; rdfs:subClassOf obo:MS_1002389, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002397 obo:IAO_0000115 "The used scoring method for the protein inference using PIA."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002397"^^xsd:string ; a owl:Class ; rdfs:label "PIA:protein inference scoring"^^xsd:string ; rdfs:subClassOf obo:MS_1002389, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002398 obo:IAO_0000115 "The used base score for the protein inference using PIA."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002398"^^xsd:string ; a owl:Class ; rdfs:label "PIA:protein inference used score"^^xsd:string ; rdfs:subClassOf obo:MS_1002389, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002399 obo:IAO_0000115 "The method to determine the PSMs used for scoring by the protein inference."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002399"^^xsd:string ; a owl:Class ; rdfs:label "PIA:protein inference used PSMs"^^xsd:string ; rdfs:subClassOf obo:MS_1002389, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002400 obo:IAO_0000115 "A filter used for the report generation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002400"^^xsd:string ; a owl:Class ; rdfs:label "PIA:filter"^^xsd:string ; rdfs:subClassOf obo:MS_1002389, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002401 obo:IAO_0000115 "At least one protein within each group should be annotated as a leading protein to indicate it has the strongest evidence, or approximately equal evidence as other group members."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002401"^^xsd:string ; a owl:Class ; rdfs:label "leading protein"^^xsd:string ; rdfs:subClassOf obo:MS_1001101 . obo:MS_1002402 obo:IAO_0000115 "Zero to many proteins within each group should be annotated as non-leading to indicate that other proteins have stronger evidence."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002402"^^xsd:string ; a owl:Class ; rdfs:label "non-leading protein"^^xsd:string ; rdfs:subClassOf obo:MS_1001101 . obo:MS_1002403 obo:IAO_0000115 "An arbitrary and optional flag applied to exactly one protein per group to indicate it can serve as the representative of the group, amongst leading proteins, in effect serving as a tiebreaker for approaches that require exactly one group representative."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002403"^^xsd:string ; a owl:Class ; rdfs:label "group representative"^^xsd:string ; rdfs:subClassOf obo:MS_1001101 . obo:MS_1002404 obo:IAO_0000115 "The number of proteins that have been identified, which must match the number of groups that pass the threshold in the file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002404"^^xsd:string ; a owl:Class ; rdfs:label "count of identified proteins"^^xsd:string ; rdfs:subClassOf obo:MS_1002704, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002405 obo:IAO_0000115 "Details describing a protein cluster."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002405"^^xsd:string ; a owl:Class ; rdfs:label "protein group-level result list attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1002699 . obo:MS_1002406 obo:IAO_0000115 "The number of protein clusters that have been identified, which must match the number of clusters that pass the threshold in the file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002406"^^xsd:string ; a owl:Class ; rdfs:label "count of identified clusters"^^xsd:string ; rdfs:subClassOf obo:MS_1002405, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002407 obo:IAO_0000115 "An identifier applied to protein groups to indicate that they are linked by shared peptides."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002407"^^xsd:string ; a owl:Class ; rdfs:label "cluster identifier"^^xsd:string ; rdfs:subClassOf obo:MS_1002698, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002408 obo:IAO_0000115 "The number of protein clusters that have been identified, which must match the number of clusters that pass the threshold in the file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002408"^^xsd:string ; a owl:Class ; rdfs:label "number of distinct protein sequences"^^xsd:string ; rdfs:subClassOf obo:MS_1002405, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002409 obo:IAO_0000115 "Assigned to a non-leading protein that has some independent evidence to support its presence relative to the leading protein(s), e.g. the protein may have a unique peptide but not sufficient to be promoted as a leading protein of another group."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002409"^^xsd:string ; a owl:Class ; rdfs:label "marginally distinguished protein"^^xsd:string ; rdfs:subClassOf obo:MS_1001101 . obo:MS_1002410 obo:IAO_0000115 "Anubis software for selected reaction monitoring data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002410"^^xsd:string ; a owl:Class ; rdfs:label "Anubis"^^xsd:string ; rdfs:subClassOf obo:MS_1000871, obo:MS_1001139 . obo:MS_1002411 obo:IAO_0000115 "The TraML format for transitions in SRM from the PSI. File extension '.TraML'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002411"^^xsd:string ; a owl:Class ; rdfs:label "TraML format"^^xsd:string ; rdfs:subClassOf obo:MS_1002128 . obo:MS_1002412 obo:IAO_0000115 "Summed area of all the extracted ion chromatogram for the peptide (e.g. of all the transitions in SRM)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002412"^^xsd:string ; a owl:Class ; rdfs:label "total XIC area"^^xsd:string ; rdfs:subClassOf obo:MS_1002737, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002413 obo:IAO_0000115 "The background area for the quantified transition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002413"^^xsd:string ; a owl:Class ; rdfs:label "product background"^^xsd:string ; rdfs:subClassOf obo:MS_1001805, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002414 obo:IAO_0000115 "Postprocessing software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002414"^^xsd:string ; a owl:Class ; rdfs:label "postprocessing software"^^xsd:string ; rdfs:subClassOf obo:MS_1001457 . obo:MS_1002415 obo:IAO_0000115 "A Boolean attribute to determine whether the protein group has passed the threshold indicated in the file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002415"^^xsd:string ; a owl:Class ; rdfs:label "protein group passes threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002346, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002416 obo:IAO_0000115 "Thermo Scientific Orbitrap Fusion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002416"^^xsd:string ; a owl:Class ; rdfs:label "Orbitrap Fusion"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1002417 obo:IAO_0000115 "Thermo Scientific Orbitrap Fusion with ETD."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002417"^^xsd:string ; a owl:Class ; rdfs:label "Orbitrap Fusion ETD"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1002418 obo:IAO_0000115 "Thermo Scientific TSQ Quantiva MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002418"^^xsd:string ; a owl:Class ; rdfs:label "TSQ Quantiva"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1002419 obo:IAO_0000115 "Thermo Scientific TSQ Endura MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002419"^^xsd:string ; a owl:Class ; rdfs:label "TSQ Endura"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1002420 obo:IAO_0000115 "URI that allows access to a PASSEL experiment."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002420"^^xsd:string ; a owl:Class ; rdfs:label "PASSEL experiment URI"^^xsd:string ; rdfs:subClassOf obo:MS_1000878, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_anyURI ] . obo:MS_1002421 obo:IAO_0000115 "Search engine input parameters specific to Paragon."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002421"^^xsd:string ; a owl:Class ; rdfs:label "Paragon input parameter"^^xsd:string ; rdfs:subClassOf obo:MS_1001302 . obo:MS_1002422 obo:IAO_0000115 "The Paragon method setting indicating the type of sample at the high level, generally meaning the type of quantitation labelling or lack thereof. 'Identification' is indicated for samples without any labels for quantitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002422"^^xsd:string ; a owl:Class ; rdfs:label "Paragon: sample type"^^xsd:string ; rdfs:subClassOf obo:MS_1002421, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002423 obo:IAO_0000115 "The Paragon method setting indicating the actual cysteine alkylation agent; 'None' is indicated if there was no cysteine alkylation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002423"^^xsd:string ; a owl:Class ; rdfs:label "Paragon: cysteine alkylation"^^xsd:string ; rdfs:subClassOf obo:MS_1002421, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002424 obo:IAO_0000115 "The Paragon method setting (translating to a large number of lower level settings) indicating the instrument used or a category of instrument."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002424"^^xsd:string ; a owl:Class ; rdfs:label "Paragon: instrument setting"^^xsd:string ; rdfs:subClassOf obo:MS_1002421, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002425 obo:IAO_0000115 "The Paragon method setting that controls the two major modes of search effort of the Paragon algorithm: the Rapid mode uses a conventional database search, while the Thorough mode uses a hybrid search, starting with the same approach as the Rapid mode but then follows it with a separate tag-based approach enabling a more extensive search."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002425"^^xsd:string ; a owl:Class ; rdfs:label "Paragon: search effort"^^xsd:string ; rdfs:subClassOf obo:MS_1002421, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002426 obo:IAO_0000115 "A Paragon method setting that allows the inclusion of large sets of features such as biological modification or substitutions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002426"^^xsd:string ; a owl:Class ; rdfs:label "Paragon: ID focus"^^xsd:string ; rdfs:subClassOf obo:MS_1002421, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002427 obo:IAO_0000115 "The Paragon method setting that controls whether FDR analysis is conducted."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002427"^^xsd:string ; a owl:Class ; rdfs:label "Paragon: FDR analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1002421, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002428 obo:IAO_0000115 "The Paragon method setting that controls whether quantitation analysis is conducted."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002428"^^xsd:string ; a owl:Class ; rdfs:label "Paragon: quantitation"^^xsd:string ; rdfs:subClassOf obo:MS_1002421, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002429 obo:IAO_0000115 "The Paragon method setting that controls whether the 'Background Correction' analysis is conducted; this processing estimates a correction to the attenuation in extremity ratios that can occur in isobaric quantatitation workflows on complex samples."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002429"^^xsd:string ; a owl:Class ; rdfs:label "Paragon: background correction"^^xsd:string ; rdfs:subClassOf obo:MS_1002421, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002430 obo:IAO_0000115 "The Paragon method setting that controls whether 'Bias Correction' is invoked in quantitation analysis; this correction is a normalization to set the central tendency of protein ratios to unity."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002430"^^xsd:string ; a owl:Class ; rdfs:label "Paragon: bias correction"^^xsd:string ; rdfs:subClassOf obo:MS_1002421, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002431 obo:IAO_0000115 "The Paragon method setting that controls which label channel is used as the denominator in calculating relative expression ratios."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002431"^^xsd:string ; a owl:Class ; rdfs:label "Paragon: channel to use as denominator in ratios"^^xsd:string ; rdfs:subClassOf obo:MS_1002421, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002432 obo:IAO_0000115 "Search engine specific metadata that are not user-controlled settings."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002432"^^xsd:string ; a owl:Class ; rdfs:label "search engine specific input metadata"^^xsd:string ; rdfs:subClassOf obo:MS_1001249 . obo:MS_1002433 obo:IAO_0000115 "This metric detects if any changes have been made to the originally installed key control files for the software; if no changes have been made, then the software version and settings are sufficient to enable exact reproduction; if changes have been made, then the modified ParameterTranslation- and ProteinPilot DataDictionary-XML files much also be provided in order to exactly reproduce a result."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002433"^^xsd:string ; a owl:Class ; rdfs:label "Paragon: modified data dictionary or parameter translation"^^xsd:string ; rdfs:subClassOf obo:MS_1002432, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002434 obo:IAO_0000115 "Number of spectra in a search."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002434"^^xsd:string ; a owl:Class ; rdfs:label "number of spectra searched"^^xsd:string ; rdfs:subClassOf obo:MS_1001249, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002435 obo:IAO_0000115 "The time that a data processing action was started."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002435"^^xsd:string ; a owl:Class ; rdfs:label "data processing start time"^^xsd:string ; rdfs:subClassOf obo:MS_1000630, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_dateTime ] . obo:MS_1002436 obo:IAO_0000115 "The Paragon method setting indicating the actual digestion agent - unlike other search tools, this setting does not include options that control partial specificity like 'semitrypsin'; if trypsin is used, trypsin is set, and partially conforming peptides are found in the Thorough mode of search; 'None' should be indicated only if there was really no digestion done."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002436"^^xsd:string ; a owl:Class ; rdfs:label "Paragon: digestion"^^xsd:string ; rdfs:subClassOf obo:MS_1001249, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002437 obo:IAO_0000115 "The number of decoy sequences, if the concatenated target-decoy approach is used."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002437"^^xsd:string ; a owl:Class ; rdfs:label "number of decoy sequences"^^xsd:string ; rdfs:subClassOf obo:MS_1001011, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ] . obo:MS_1002438 obo:IAO_0000115 "Information about the list of PSMs (SpectrumIdentificationList)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002438"^^xsd:string ; a owl:Class ; rdfs:label "spectrum identification list result details"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001000 ] . obo:MS_1002439 obo:IAO_0000115 "A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is the final set of identifications to be interpreted by consuming software. Amongst the set of SpectrumIdentificationList(s) that are flagged with the term, each spectrum must not be referenced from more than one SpectrumIdentificationResult."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002439"^^xsd:string ; a owl:Class ; rdfs:label "final PSM list"^^xsd:string ; rdfs:subClassOf obo:MS_1002438 . obo:MS_1002440 obo:IAO_0000115 "A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is not the final set of identifications to be interpreted by consuming software. This term should be used when results are provided from multiple search engines for the results from each search engine before they are combined to give consensus identifications. Amongst the set of SpectrumIdentificationList(s) that are flagged with the term, each spectrum may be referenced from more than one SpectrumIdentificationResult."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002440"^^xsd:string ; a owl:Class ; rdfs:label "intermediate PSM list"^^xsd:string ; rdfs:subClassOf obo:MS_1002438 . obo:MS_1002441 obo:IAO_0000115 "AIA Analytical Data Interchange file format for mass spectrometry data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002441"^^xsd:string ; a owl:Class ; rdfs:label "Andi-MS format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1002442 obo:IAO_0000115 "The format of the chromatography file being used. This could be a instrument or vendor specific proprietary file format or a converted open file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002442"^^xsd:string ; a owl:Class ; rdfs:label "chromatograph file format"^^xsd:string ; rdfs:subClassOf obo:MS_1001459 . obo:MS_1002443 obo:IAO_0000115 "AIA Analytical Data Interchange file format for chromatography data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002443"^^xsd:string ; a owl:Class ; rdfs:label "Andi-CHROM format"^^xsd:string ; rdfs:subClassOf obo:MS_1002442 . obo:MS_1002444 obo:IAO_0000115 "The 6420 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002444"^^xsd:string ; a owl:Class ; rdfs:label "6420 Triple Quadrupole LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002445 obo:IAO_0000115 "The 6460 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. It is similar to the 6420 but adds Agilent Jet Stream (AJS) technology to increase sensitivity."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002445"^^xsd:string ; a owl:Class ; rdfs:label "6460 Triple Quadrupole LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002446 obo:IAO_0000115 "The 6490 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. It is similar to the 6420 but adds the Agilent iFunnel technology to increase sensitivity."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002446"^^xsd:string ; a owl:Class ; rdfs:label "6490 Triple Quadrupole LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002447 obo:IAO_0000115 "The Paragon method setting indicating a list of one or more 'special factors', which generally capture secondary effects (relative to other settings) as a set of probabilities of modification features that override the assumed levels. For example the 'gel-based ID' special factor causes an increase probability of oxidation on several resides because of the air exposure impact on a gel, in addition to other effects."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002447"^^xsd:string ; a owl:Class ; rdfs:label "Paragon:special factor"^^xsd:string ; rdfs:subClassOf obo:MS_1002421, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002448 obo:IAO_0000115 "The PEAKS inChorus peptide score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002448"^^xsd:string ; a owl:Class ; rdfs:label "PEAKS:inChorusPeptideScore"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002449 obo:IAO_0000115 "The PEAKS inChorus protein score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002449"^^xsd:string ; a owl:Class ; rdfs:label "PEAKS:inChorusProteinScore"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002450 obo:IAO_0000115 "Ion b-H3PO4: b ion with lost phosphoric acid."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002450"^^xsd:string ; a owl:Class ; rdfs:label "param: b ion-H3PO4 DEPRECATED"^^xsd:string ; rdfs:subClassOf obo:MS_1001066 . obo:MS_1002451 obo:IAO_0000115 "Ion y-H3PO4: y ion with lost phosphoric acid."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002451"^^xsd:string ; a owl:Class ; rdfs:label "param: y ion-H3PO4 DEPRECATED"^^xsd:string ; rdfs:subClassOf obo:MS_1001066 . obo:MS_1002452 obo:IAO_0000115 "The Maltcms Graphical User Interface."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002452"^^xsd:string ; a owl:Class ; rdfs:label "Maui"^^xsd:string ; rdfs:subClassOf obo:MS_1001456, obo:MS_1001457 . obo:MS_1002453 obo:IAO_0000115 "No fixed modifications are included as a parameter for the search, and therefore they are not reported."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002453"^^xsd:string ; a owl:Class ; rdfs:label "No fixed modifications searched"^^xsd:string ; rdfs:subClassOf obo:MS_1002094 . obo:MS_1002454 obo:IAO_0000115 "No variable modifications are included as a parameter for the search, and therefore they are not reported."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002454"^^xsd:string ; a owl:Class ; rdfs:label "No variable modifications searched"^^xsd:string ; rdfs:subClassOf obo:MS_1002094 . obo:MS_1002455 obo:IAO_0000115 "OBSOLETE Neutral loss of water."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002455"^^xsd:string ; a owl:Class ; rdfs:comment "This term was obsoleted because it should be replaced by MS:1000336 with value H2O."^^xsd:string ; rdfs:label "H2O neutral loss"^^xsd:string ; rdfs:subClassOf obo:MS_1000336, obo:MS_1002473 ; owl:deprecated true . obo:MS_1002456 obo:IAO_0000115 "OBSOLETE Neutral loss of ammonia."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002456"^^xsd:string ; a owl:Class ; rdfs:comment "This term was obsoleted because it should be replaced by MS:1000336 with value NH3."^^xsd:string ; rdfs:label "NH3 neutral loss"^^xsd:string ; rdfs:subClassOf obo:MS_1000336, obo:MS_1002473 ; owl:deprecated true . obo:MS_1002457 obo:IAO_0000115 "OBSOLETE Neutral loss of phosphoric acid."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002457"^^xsd:string ; a owl:Class ; rdfs:comment "This term was obsoleted because it should be replaced by MS:1000336 with value H3PO4."^^xsd:string ; rdfs:label "H3PO4 neutral loss"^^xsd:string ; rdfs:subClassOf obo:MS_1000336, obo:MS_1002473 ; owl:deprecated true . obo:MS_1002458 obo:IAO_0000115 "PeptideShaker is a software for the interpretation of proteomics identification results."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002458"^^xsd:string ; a owl:Class ; rdfs:label "PeptideShaker"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002459 obo:IAO_0000115 "MS Amanda csv output format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002459"^^xsd:string ; a owl:Class ; rdfs:label "MS Amanda csv format"^^xsd:string ; rdfs:subClassOf obo:MS_1001040 . obo:MS_1002460 obo:IAO_0000115 "Estimation of the global false negative rate of protein groups."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002460"^^xsd:string ; a owl:Class ; rdfs:label "protein group-level global FNR"^^xsd:string ; rdfs:subClassOf obo:MS_1002706, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ] . obo:MS_1002461 obo:IAO_0000115 "Estimation of the global confidence of protein groups."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002461"^^xsd:string ; a owl:Class ; rdfs:label "protein group-level confidence"^^xsd:string ; rdfs:subClassOf obo:MS_1002348 . obo:MS_1002462 obo:IAO_0000115 "Estimation of the global false negative rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002462"^^xsd:string ; a owl:Class ; rdfs:label "peptide sequence-level global FNR"^^xsd:string ; rdfs:subClassOf obo:MS_1002703, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ] . obo:MS_1002463 obo:IAO_0000115 "Estimation of the global confidence for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002463"^^xsd:string ; a owl:Class ; rdfs:label "peptide sequence-level global confidence"^^xsd:string ; rdfs:subClassOf obo:MS_1002703 . obo:MS_1002464 obo:IAO_0000115 "Estimation of the global false negative rate of peptide spectrum matches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002464"^^xsd:string ; a owl:Class ; rdfs:label "PSM-level global FNR"^^xsd:string ; rdfs:subClassOf obo:MS_1002701, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ] . obo:MS_1002465 obo:IAO_0000115 "Estimation of the global confidence of peptide spectrum matches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002465"^^xsd:string ; a owl:Class ; rdfs:label "PSM-level global confidence"^^xsd:string ; rdfs:subClassOf obo:MS_1002701 . obo:MS_1002466 obo:IAO_0000115 "The probability based PeptideShaker PSM score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002466"^^xsd:string ; a owl:Class ; rdfs:label "PeptideShaker PSM score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002467 obo:IAO_0000115 "The probability based PeptideShaker PSM confidence."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002467"^^xsd:string ; a owl:Class ; rdfs:label "PeptideShaker PSM confidence"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002468 obo:IAO_0000115 "The probability based PeptideShaker peptide score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002468"^^xsd:string ; a owl:Class ; rdfs:label "PeptideShaker peptide score"^^xsd:string ; rdfs:subClassOf obo:MS_1002358, obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002469 obo:IAO_0000115 "The probability based PeptideShaker peptide confidence."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002469"^^xsd:string ; a owl:Class ; rdfs:label "PeptideShaker peptide confidence"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002470 obo:IAO_0000115 "The probability based PeptideShaker protein group score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002470"^^xsd:string ; a owl:Class ; rdfs:label "PeptideShaker protein group score"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, obo:MS_1002368, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002471 obo:IAO_0000115 "The probability based PeptideShaker protein group confidence."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002471"^^xsd:string ; a owl:Class ; rdfs:label "PeptideShaker protein group confidence"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002472 obo:IAO_0000115 "A collision-induced dissociation process that occurs in a trap-type collision cell."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002472"^^xsd:string ; a owl:Class ; rdfs:label "trap-type collision-induced dissociation"^^xsd:string ; rdfs:subClassOf obo:MS_1000133 . obo:MS_1002473 obo:IAO_0000115 "The description of the ion fragment series (including charges and neutral losses) that are considered by the search engine."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002473"^^xsd:string ; a owl:Class ; rdfs:label "ion series considered in search"^^xsd:string ; rdfs:subClassOf obo:MS_1001249 . obo:MS_1002474 obo:IAO_0000115 "The sum of peptide-level scores for peptides mapped only to non-canonical gene models within the group."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002474"^^xsd:string ; a owl:Class ; rdfs:label "ProteoAnnotator:non-canonical gene model score"^^xsd:string ; rdfs:subClassOf obo:MS_1002368, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002475 obo:IAO_0000115 "The count of the number of peptide sequences mapped to non-canonical gene models only within the group."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002475"^^xsd:string ; a owl:Class ; rdfs:label "ProteoAnnotator:count alternative peptides"^^xsd:string ; rdfs:subClassOf obo:MS_1002368, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002476 obo:IAO_0000115 "Drift time of an ion or spectrum of ions as measured in an ion mobility mass spectrometer. This time might refer to the central value of a bin into which all ions within a narrow range of drift time have been aggregated."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002476"^^xsd:string ; a owl:Class ; rdfs:label "ion mobility drift time"^^xsd:string ; rdfs:subClassOf obo:MS_1000455, obo:MS_1002892, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000028 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002477 obo:IAO_0000115 "Array of population mean ion mobility values from a drift time device, reported in seconds (or milliseconds), corresponding to a spectrum of individual peaks encoded with an m/z array."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002477"^^xsd:string ; a owl:Class ; rdfs:label "mean ion mobility drift time array"^^xsd:string ; rdfs:subClassOf obo:MS_1002893, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000028 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002478 obo:IAO_0000115 "Array of mean charge values where the mean charge is calculated as a weighted mean of the charges of individual peaks that are aggregated into a processed spectrum."^^xsd:string ; oboInOwl:hasDbXref "binary-data-type:MS:1000521"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002478"^^xsd:string ; a owl:Class ; rdfs:label "mean charge array"^^xsd:string ; rdfs:subClassOf obo:MS_1000513 . obo:MS_1002479 obo:IAO_0000115 "Regular expression."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002479"^^xsd:string ; a owl:Class ; rdfs:label "regular expression"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_0000000 ] . obo:MS_1002480 obo:IAO_0000115 """(10[.][0-9]{4,}(?:[.][0-9]+)*/(?:(?![\"&'<>])[^ \\r \\v\\f])+)."""^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002480"^^xsd:string ; a owl:Class ; rdfs:label "regular expression for a digital object identifier (DOI)"^^xsd:string ; rdfs:subClassOf obo:MS_1002479 . obo:MS_1002481 obo:IAO_0000115 "A collision-induced dissociation process wherein the projectile ion has the translational energy higher than approximately 1000 eV."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002481"^^xsd:string ; a owl:Class ; rdfs:label "higher energy beam-type collision-induced dissociation"^^xsd:string ; rdfs:subClassOf obo:MS_1000422 . obo:MS_1002482 obo:IAO_0000115 "Estimated statistical threshold."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002482"^^xsd:string ; a owl:Class ; rdfs:label "statistical threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1001060 . obo:MS_1002483 obo:IAO_0000115 "Estimated statistical threshold at PSM-level."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002483"^^xsd:string ; a owl:Class ; rdfs:label "PSM-level statistical threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002573 . obo:MS_1002484 obo:IAO_0000115 "Estimated statistical threshold at peptide-level."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002484"^^xsd:string ; a owl:Class ; rdfs:label "peptide-level statistical threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002573 . obo:MS_1002485 obo:IAO_0000115 "Estimated statistical threshold at protein-level."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002485"^^xsd:string ; a owl:Class ; rdfs:label "protein-level statistical threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002572 . obo:MS_1002486 obo:IAO_0000115 "Estimated statistical threshold at protein group-level."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002486"^^xsd:string ; a owl:Class ; rdfs:label "protein group-level statistical threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002572 . obo:MS_1002487 obo:IAO_0000115 "Dataset identifier issued by the MassIVE repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002487"^^xsd:string ; a owl:Class ; rdfs:label "MassIVE dataset identifier"^^xsd:string ; rdfs:subClassOf obo:MS_1000878, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002488 obo:IAO_0000115 "URI that allows the access to one dataset in the MassIVE repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002488"^^xsd:string ; a owl:Class ; rdfs:label "MassIVE dataset URI"^^xsd:string ; rdfs:subClassOf obo:MS_1000878, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_anyURI ] . obo:MS_1002489 obo:IAO_0000115 "Details describing a special processing."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002489"^^xsd:string ; a owl:Class ; rdfs:label "special processing"^^xsd:string ; rdfs:subClassOf obo:MS_1001080, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001000 ] . obo:MS_1002490 obo:IAO_0000115 "Peptide-level scoring performed."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002490"^^xsd:string ; a owl:Class ; rdfs:label "peptide-level scoring"^^xsd:string ; rdfs:subClassOf obo:MS_1002489 . obo:MS_1002491 obo:IAO_0000115 "Modification localization scoring performed."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002491"^^xsd:string ; a owl:Class ; rdfs:label "modification localization scoring"^^xsd:string ; rdfs:subClassOf obo:MS_1002489 . obo:MS_1002492 obo:IAO_0000115 "Consensus multiple search engine approach performed."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002492"^^xsd:string ; a owl:Class ; rdfs:label "consensus scoring"^^xsd:string ; rdfs:subClassOf obo:MS_1002489 . obo:MS_1002493 obo:IAO_0000115 "Sample pre-fractionation performed."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002493"^^xsd:string ; a owl:Class ; rdfs:label "sample pre-fractionation"^^xsd:string ; rdfs:subClassOf obo:MS_1002489 . obo:MS_1002494 obo:IAO_0000115 "Cross-linking search performed."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002494"^^xsd:string ; a owl:Class ; rdfs:label "cross-linking search"^^xsd:string ; rdfs:subClassOf obo:MS_1002489 . obo:MS_1002495 obo:IAO_0000115 "No special processing performed."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002495"^^xsd:string ; a owl:Class ; rdfs:label "no special processing"^^xsd:string ; rdfs:subClassOf obo:MS_1002489 . obo:MS_1002496 obo:IAO_0000115 "Group PSMs by distinct peptide sequence ignoring modifications."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002496"^^xsd:string ; a owl:Class ; rdfs:label "group PSMs by sequence"^^xsd:string ; rdfs:subClassOf obo:MS_1002658 . obo:MS_1002497 obo:IAO_0000115 "Group PSMs by distinct peptide sequence with taking modifications into account."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002497"^^xsd:string ; a owl:Class ; rdfs:label "group PSMs by sequence with modifications"^^xsd:string ; rdfs:subClassOf obo:MS_1002658 . obo:MS_1002498 obo:IAO_0000115 "Group PSMs by distinct peptide sequence with taking modifications and charge into account."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002498"^^xsd:string ; a owl:Class ; rdfs:label "group PSMs by sequence with modifications and charge"^^xsd:string ; rdfs:subClassOf obo:MS_1002658 . obo:MS_1002499 obo:IAO_0000115 "OBSOLETE Peptide level score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002499"^^xsd:string ; a owl:Class ; rdfs:comment "This term was obsoleted because it was never intended to go in the CV."^^xsd:string ; rdfs:label "peptide level score"^^xsd:string ; rdfs:subClassOf obo:MS_1002358 ; owl:deprecated true . obo:MS_1002500 obo:IAO_0000115 "A Boolean attribute to determine whether the peptide has passed the threshold indicated in the file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002500"^^xsd:string ; a owl:Class ; rdfs:label "peptide passes threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1001105, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002501 obo:IAO_0000115 "Indicating that no PSM threshold was used."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002501"^^xsd:string ; a owl:Class ; rdfs:label "no PSM threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002701 . obo:MS_1002502 obo:IAO_0000115 "Indicating that no peptide-level threshold was used."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002502"^^xsd:string ; a owl:Class ; rdfs:label "no peptide-level threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1001105 . obo:MS_1002503 obo:IAO_0000115 "Flags a PSM that it is used for peptide-level scoring."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002503"^^xsd:string ; a owl:Class ; rdfs:label "PSM is used for peptide-level scoring"^^xsd:string ; rdfs:subClassOf obo:MS_1001105 . obo:MS_1002504 obo:IAO_0000115 "The order of modifications to be referenced elsewhere in the document."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002504"^^xsd:string ; a owl:Class ; rdfs:label "modification index"^^xsd:string ; rdfs:subClassOf obo:MS_1001055, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002505 obo:IAO_0000115 "([:digit:]+:[0|1]{1}.[:digit:]+[Ee]{0,1}[+-]{0,1}[:digit:]*:[:digit:]+[|]{1}[:digit:]+:(true|false){1})."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002505"^^xsd:string ; a owl:Class ; rdfs:label "regular expression for modification localization scoring"^^xsd:string ; rdfs:subClassOf obo:MS_1002479 . obo:MS_1002506 obo:IAO_0000115 "Modification position score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002506"^^xsd:string ; a owl:Class ; rdfs:label "modification position score"^^xsd:string ; rdfs:subClassOf obo:MS_1001055 . obo:MS_1002507 obo:IAO_0000115 "Mod position score: false localization rate."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002507"^^xsd:string ; a owl:Class ; rdfs:label "modification rescoring:false localization rate"^^xsd:string ; rdfs:subClassOf obo:MS_1002506, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002505 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002508 obo:IAO_0000115 "Cross-linking attribute."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002508"^^xsd:string ; a owl:Class ; rdfs:label "cross-linking attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1002694 . obo:MS_1002509 obo:IAO_0000115 "The Cross-linking donor, assigned according to the following rules: the export software SHOULD use the following rules to choose the cross-link donor as the: longer peptide, then higher peptide neutral mass, then alphabetical order."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002509"^^xsd:string ; a owl:Class ; rdfs:label "cross-link donor"^^xsd:string ; rdfs:subClassOf obo:MS_1002508, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002510 obo:IAO_0000115 "Cross-linking acceptor, assigned according to the following rules: the export software SHOULD use the following rules to choose the cross-link donor as the: longer peptide, then higher peptide neutral mass, then alphabetical order."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002510"^^xsd:string ; a owl:Class ; rdfs:label "cross-link acceptor"^^xsd:string ; rdfs:subClassOf obo:MS_1002508, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002511 obo:IAO_0000115 "Cross-linked spectrum identification item."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002511"^^xsd:string ; a owl:Class ; rdfs:label "cross-link spectrum identification item"^^xsd:string ; rdfs:subClassOf obo:MS_1002508, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002512 obo:IAO_0000115 "Cross-linking scoring value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002512"^^xsd:string ; a owl:Class ; rdfs:label "cross-linking score"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002513 obo:IAO_0000115 "The absolute abundance of protein in a cell."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002513"^^xsd:string ; a owl:Class ; rdfs:label "molecules per cell"^^xsd:string ; rdfs:subClassOf obo:MS_1001805, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002514 obo:IAO_0000115 "Absolute quantitation analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002514"^^xsd:string ; a owl:Class ; rdfs:label "absolute quantitation analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1001833 . obo:MS_1002515 obo:IAO_0000115 "States whether an internal peptide reference is used or not in absolute quantitation analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002515"^^xsd:string ; a owl:Class ; rdfs:label "internal peptide reference used"^^xsd:string ; rdfs:subClassOf obo:MS_1001832, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002516 obo:IAO_0000115 "States whether an internal protein reference is used or not in absolute quantitation analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002516"^^xsd:string ; a owl:Class ; rdfs:label "internal protein reference used"^^xsd:string ; rdfs:subClassOf obo:MS_1001832, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002517 obo:IAO_0000115 "The absolute abundance of the spiked in reference peptide or protein used for absolute quantitation analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002517"^^xsd:string ; a owl:Class ; rdfs:label "internal reference abundance"^^xsd:string ; rdfs:subClassOf obo:MS_1001805, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002518 obo:IAO_0000115 "The data type normalised abundance for protein groups produced by Progenesis LC-MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002518"^^xsd:string ; a owl:Class ; rdfs:label "Progenesis:protein group normalised abundance"^^xsd:string ; rdfs:subClassOf obo:MS_1002739, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002519 obo:IAO_0000115 "The data type raw abundance for protein groups produced by Progenesis LC-MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002519"^^xsd:string ; a owl:Class ; rdfs:label "Progenesis:protein group raw abundance"^^xsd:string ; rdfs:subClassOf obo:MS_1002739, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002520 obo:IAO_0000115 "Peptide group identifier for peptide-level stats."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002520"^^xsd:string ; a owl:Class ; rdfs:label "peptide group ID"^^xsd:string ; rdfs:subClassOf obo:MS_1001105, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002521 obo:IAO_0000115 "A technique in which mass spectra are acquired in a spatially resolved manner. This is typically achieved by scanning a laser or primary ion beam over a sample and acquiring a mass spectrum at each position."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002521"^^xsd:string ; a owl:Class ; rdfs:label "mass spectrometry imaging"^^xsd:string ; rdfs:subClassOf obo:MS_1000857 . obo:MS_1002522 obo:IAO_0000115 "Determine 1st static terminal post-translational modifications (PTMs)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002522"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:1. Static Terminal Modification"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002523 obo:IAO_0000115 "Thermo Scientific Q Exactive."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002523"^^xsd:string ; a owl:Class ; rdfs:label "Q Exactive HF"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1002524 obo:IAO_0000115 "Thermo Scientific PepFinder BioPharma analysis software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002524"^^xsd:string ; a owl:Class ; rdfs:label "PepFinder"^^xsd:string ; rdfs:subClassOf obo:MS_1001457 . obo:MS_1002525 obo:IAO_0000115 "Thermo Scientific TSQ 8000 Evo MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002525"^^xsd:string ; a owl:Class ; rdfs:label "TSQ 8000 Evo"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1002526 obo:IAO_0000115 "Thermo Scientific Exactive Plus MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002526"^^xsd:string ; a owl:Class ; rdfs:label "Exactive Plus"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1002527 obo:IAO_0000115 "Instrument specific scan properties that are associated with a value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002527"^^xsd:string ; a owl:Class ; rdfs:label "instrument specific scan attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1000503 . obo:MS_1002528 obo:IAO_0000115 "Synchronous prefilter selection."^^xsd:string ; oboInOwl:hasExactSynonym "SPS"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002528"^^xsd:string ; a owl:Class ; rdfs:label "synchronous prefilter selection"^^xsd:string ; rdfs:subClassOf obo:MS_1002527 . obo:MS_1002529 obo:IAO_0000115 "A data array of resolution values."^^xsd:string ; oboInOwl:hasDbXref "binary-data-type:MS:1000521"^^xsd:string, "binary-data-type:MS:1000523"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002529"^^xsd:string ; a owl:Class ; rdfs:label "resolution array"^^xsd:string ; rdfs:subClassOf obo:MS_1000513 . obo:MS_1002530 obo:IAO_0000115 "A data array of signal baseline values (the signal in the absence of analytes)."^^xsd:string ; oboInOwl:hasDbXref "binary-data-type:MS:1000521"^^xsd:string, "binary-data-type:MS:1000523"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002530"^^xsd:string ; a owl:Class ; rdfs:label "baseline array"^^xsd:string ; rdfs:subClassOf obo:MS_1000513 . obo:MS_1002531 obo:IAO_0000115 "SQLite-based file format created at Pacific Northwest National Lab. It stores an intermediate analysis of ion-mobility mass spectrometry data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002531"^^xsd:string ; a owl:Class ; rdfs:label "UIMF format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1002532 obo:IAO_0000115 "Native format defined by frame=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger frameType=xsd:nonNegativeInteger."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002532"^^xsd:string ; a owl:Class ; rdfs:label "UIMF nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767 . obo:MS_1002533 obo:IAO_0000115 "SCIEX TripleTOF 6600, a quadrupole - quadrupole - time-of-flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002533"^^xsd:string ; a owl:Class ; rdfs:label "TripleTOF 6600"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1002534 obo:IAO_0000115 "The ProLuCID result 'XCorr'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002534"^^xsd:string ; a owl:Class ; rdfs:label "ProLuCID:xcorr"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002535 obo:IAO_0000115 "The ProLuCID result 'DeltaCn'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002535"^^xsd:string ; a owl:Class ; rdfs:label "ProLuCID:deltacn"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002536 obo:IAO_0000115 "D-Score for PTM site location at the PSM-level."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002536"^^xsd:string ; a owl:Class ; rdfs:label "D-Score"^^xsd:string ; rdfs:subClassOf obo:MS_1001968, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002505 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002537 obo:IAO_0000115 "MD-Score for PTM site location at the PSM-level."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002537"^^xsd:string ; a owl:Class ; rdfs:label "MD-Score"^^xsd:string ; rdfs:subClassOf obo:MS_1001968, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002505 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002538 obo:IAO_0000115 "Localization confidence metric for a post translational modification (PTM)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002538"^^xsd:string ; a owl:Class ; rdfs:label "PTM localization confidence metric"^^xsd:string ; rdfs:subClassOf obo:MS_1001405, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002539 obo:IAO_0000115 "PeptideShaker quality criteria for the confidence of PTM localizations."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002539"^^xsd:string ; a owl:Class ; rdfs:label "PeptideShaker PTM confidence type"^^xsd:string ; rdfs:subClassOf obo:MS_1002538, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002540 obo:IAO_0000115 "PeptideShaker quality criteria for the confidence of PSM's."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002540"^^xsd:string ; a owl:Class ; rdfs:label "PeptideShaker PSM confidence type"^^xsd:string ; rdfs:subClassOf obo:MS_1002347, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002541 obo:IAO_0000115 "PeptideShaker quality criteria for the confidence of peptide identifications."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002541"^^xsd:string ; a owl:Class ; rdfs:label "PeptideShaker peptide confidence type"^^xsd:string ; rdfs:subClassOf obo:MS_1002358, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002542 obo:IAO_0000115 "PeptideShaker quality criteria for the confidence of protein identifications."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002542"^^xsd:string ; a owl:Class ; rdfs:label "PeptideShaker protein confidence type"^^xsd:string ; rdfs:subClassOf obo:MS_1001116, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002543 obo:IAO_0000115 "Target/Decoy based FDR estimation for cross-linking peptide-identifications."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002543"^^xsd:string ; a owl:Class ; rdfs:label "xiFDR"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002544 obo:IAO_0000115 "Search engine for cross-linked peptides."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002544"^^xsd:string ; a owl:Class ; rdfs:label "xi"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002545 obo:IAO_0000115 "The xi result 'Score'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002545"^^xsd:string ; a owl:Class ; rdfs:label "xi:score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002546 obo:IAO_0000115 "A software package to convert Skyline report to mzQuantML."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002546"^^xsd:string ; a owl:Class ; rdfs:label "Skyline mzQuantML converter"^^xsd:string ; rdfs:subClassOf obo:MS_1001139, obo:MS_1001456 . obo:MS_1002547 obo:IAO_0000115 "A normalized spectral abundance factor (NSAF)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002547"^^xsd:string ; a owl:Class ; rdfs:label "normalized spectral abundance factor"^^xsd:string ; rdfs:subClassOf obo:MS_1001805 . obo:MS_1002548 obo:IAO_0000115 "A distributed normalized spectral abundance factor (dNSAF)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002548"^^xsd:string ; a owl:Class ; rdfs:label "distributed normalized spectral abundance factor"^^xsd:string ; rdfs:subClassOf obo:MS_1001805 . obo:MS_1002549 obo:IAO_0000115 "Statistic to convey the confidence of the localization of an amino acid modification on a peptide sequence."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002549"^^xsd:string ; a owl:Class ; rdfs:label "PTM localization distinct peptide-level statistic"^^xsd:string ; rdfs:subClassOf obo:MS_1002689 . obo:MS_1002550 obo:IAO_0000115 "phosphoRS score for PTM site location at the peptide-level."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002550"^^xsd:string ; a owl:Class ; rdfs:label "peptide:phosphoRS score"^^xsd:string ; rdfs:subClassOf obo:MS_1002549, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002505 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002551 obo:IAO_0000115 "A-score for PTM site location at the peptide-level."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002551"^^xsd:string ; a owl:Class ; rdfs:label "peptide:Ascore"^^xsd:string ; rdfs:subClassOf obo:MS_1002549, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002505 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002552 obo:IAO_0000115 "H-Score for peptide phosphorylation site location at the peptide-level."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002552"^^xsd:string ; a owl:Class ; rdfs:label "peptide:H-Score"^^xsd:string ; rdfs:subClassOf obo:MS_1002549, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002505 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002553 obo:IAO_0000115 "D-Score for PTM site location at the peptide-level."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002553"^^xsd:string ; a owl:Class ; rdfs:label "peptide:D-Score"^^xsd:string ; rdfs:subClassOf obo:MS_1002549, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002505 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002554 obo:IAO_0000115 "MD-Score for PTM site location at the peptide-level."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002554"^^xsd:string ; a owl:Class ; rdfs:label "peptide:MD-Score"^^xsd:string ; rdfs:subClassOf obo:MS_1002549, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002505 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002555 obo:IAO_0000115 "Threshold for PTM site location score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002555"^^xsd:string ; a owl:Class ; rdfs:label "PTM localization score threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1001405 . obo:MS_1002556 obo:IAO_0000115 "Threshold for Ascore PTM site location score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002556"^^xsd:string ; a owl:Class ; rdfs:label "Ascore threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002555, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002557 obo:IAO_0000115 "Threshold for D-score PTM site location score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002557"^^xsd:string ; a owl:Class ; rdfs:label "D-Score threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002555, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002558 obo:IAO_0000115 "Threshold for MD-score PTM site location score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002558"^^xsd:string ; a owl:Class ; rdfs:label "MD-Score threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002555, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002559 obo:IAO_0000115 "Threshold for H-score PTM site location score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002559"^^xsd:string ; a owl:Class ; rdfs:label "H-Score threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002555, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002560 obo:IAO_0000115 "Threshold for DeBunker PTM site location score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002560"^^xsd:string ; a owl:Class ; rdfs:label "DeBunker:score threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002555, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002561 obo:IAO_0000115 "Threshold for Mascot PTM site assignment confidence."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002561"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:PTM site assignment confidence threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002555, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002562 obo:IAO_0000115 "Threshold for MSQuant:PTM-score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002562"^^xsd:string ; a owl:Class ; rdfs:label "MSQuant:PTM-score threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002555, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002563 obo:IAO_0000115 "Threshold for MaxQuant:PTM Score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002563"^^xsd:string ; a owl:Class ; rdfs:label "MaxQuant:PTM Score threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002555, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002564 obo:IAO_0000115 "Threshold for MaxQuant:P-site localization probability."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002564"^^xsd:string ; a owl:Class ; rdfs:label "MaxQuant:P-site localization probability threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002555, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002565 obo:IAO_0000115 "Threshold for MaxQuant:PTM Delta Score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002565"^^xsd:string ; a owl:Class ; rdfs:label "MaxQuant:PTM Delta Score threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002555, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002566 obo:IAO_0000115 "Threshold for MaxQuant:Phospho (STY) Probabilities."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002566"^^xsd:string ; a owl:Class ; rdfs:label "MaxQuant:Phospho (STY) Probabilities threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002555, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002567 obo:IAO_0000115 "Threshold for phosphoRS score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002567"^^xsd:string ; a owl:Class ; rdfs:label "phosphoRS score threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002555, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002568 obo:IAO_0000115 "Threshold for phosphoRS site probability."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002568"^^xsd:string ; a owl:Class ; rdfs:label "phosphoRS site probability threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002555, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002569 obo:IAO_0000115 "Number of spectra processed at once in a ProteomeDiscoverer search."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002569"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Number of Spectra Processed At Once"^^xsd:string ; rdfs:subClassOf obo:MS_1002101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002570 obo:IAO_0000115 "A protein for which the matched peptide sequences are the same, or a subset of, the matched peptide sequences for two or more other proteins combined. These other proteins need not all be in the same group."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002570"^^xsd:string ; a owl:Class ; rdfs:label "sequence multiply subsumable protein"^^xsd:string ; rdfs:subClassOf obo:MS_1001101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002571 obo:IAO_0000115 "A protein for which the matched spectra are the same, or a subset of, the matched spectra for two or more other proteins combined. These other proteins need not all be in the same group."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002571"^^xsd:string ; a owl:Class ; rdfs:label "spectrum multiply subsumable protein"^^xsd:string ; rdfs:subClassOf obo:MS_1001101, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002572 obo:IAO_0000115 "Estimated statistical threshold used for protein detection."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002572"^^xsd:string ; a owl:Class ; rdfs:label "protein detection statistical threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002482 . obo:MS_1002573 obo:IAO_0000115 "Estimated statistical threshold used for spectrum identification."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002573"^^xsd:string ; a owl:Class ; rdfs:label "spectrum identification statistical threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002482 . obo:MS_1002574 obo:IAO_0000115 "A program in the TPP that calculates PSM, peptide, and protein-level abundances based on 2-channel isotope-labelled data such as ICAT, SILAC, etc."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002574"^^xsd:string ; a owl:Class ; rdfs:label "ASAPRatio"^^xsd:string ; rdfs:subClassOf obo:MS_1002286 . obo:MS_1002575 obo:IAO_0000115 "Tide open-source sequence search program developed at the University of Washington."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002575"^^xsd:string ; a owl:Class ; rdfs:label "Tide"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002576 obo:IAO_0000115 "Andromeda result file output format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002576"^^xsd:string ; a owl:Class ; rdfs:label "Andromeda result format"^^xsd:string ; rdfs:subClassOf obo:MS_1001040 . obo:MS_1002577 obo:IAO_0000115 "SCIEX 2000 QTRAP."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002577"^^xsd:string ; a owl:Class ; rdfs:label "2000 QTRAP"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1002578 obo:IAO_0000115 "SCIEX 2500 QTRAP."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002578"^^xsd:string ; a owl:Class ; rdfs:label "2500 QTRAP"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1002579 obo:IAO_0000115 "SCIEX 3500 QTRAP."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002579"^^xsd:string ; a owl:Class ; rdfs:label "3500 QTRAP"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1002580 obo:IAO_0000115 "SCIEX QTRAP 4500."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002580"^^xsd:string ; a owl:Class ; rdfs:label "QTRAP 4500"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1002581 obo:IAO_0000115 "SCIEX QTRAP 6500."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002581"^^xsd:string ; a owl:Class ; rdfs:label "QTRAP 6500"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1002582 obo:IAO_0000115 "SCIEX QTRAP 6500+."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002582"^^xsd:string ; a owl:Class ; rdfs:label "QTRAP 6500+"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1002583 obo:IAO_0000115 "SCIEX TripleTOF 4600 time-of-flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002583"^^xsd:string ; a owl:Class ; rdfs:label "TripleTOF 4600"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1002584 obo:IAO_0000115 "SCIEX TripleTOF 5600+ time-of-flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002584"^^xsd:string ; a owl:Class ; rdfs:label "TripleTOF 5600+"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1002585 obo:IAO_0000115 "Applied Biosystems/MDS SCIEX API 100 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002585"^^xsd:string ; a owl:Class ; rdfs:label "API 100"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1002586 obo:IAO_0000115 "Applied Biosystems/MDS SCIEX API 100LC MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002586"^^xsd:string ; a owl:Class ; rdfs:label "API 100LC"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1002587 obo:IAO_0000115 "Applied Biosystems/MDS SCIEX API 165 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002587"^^xsd:string ; a owl:Class ; rdfs:label "API 165"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1002588 obo:IAO_0000115 "Applied Biosystems/MDS SCIEX API 300 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002588"^^xsd:string ; a owl:Class ; rdfs:label "API 300"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1002589 obo:IAO_0000115 "Applied Biosystems/MDS SCIEX API 350 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002589"^^xsd:string ; a owl:Class ; rdfs:label "API 350"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1002590 obo:IAO_0000115 "Applied Biosystems/MDS SCIEX API 365 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002590"^^xsd:string ; a owl:Class ; rdfs:label "API 365"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1002591 obo:IAO_0000115 "SCIEX Triple Quad 3500."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002591"^^xsd:string ; a owl:Class ; rdfs:label "Triple Quad 3500"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1002592 obo:IAO_0000115 "SCIEX Triple Quad 4500."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002592"^^xsd:string ; a owl:Class ; rdfs:label "Triple Quad 4500"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1002593 obo:IAO_0000115 "SCIEX Triple Quad 5500."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002593"^^xsd:string ; a owl:Class ; rdfs:label "Triple Quad 5500"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1002594 obo:IAO_0000115 "SCIEX Triple Quad 6500."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002594"^^xsd:string ; a owl:Class ; rdfs:label "Triple Quad 6500"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1002595 obo:IAO_0000115 "SCIEX Triple Quad 6500+."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002595"^^xsd:string ; a owl:Class ; rdfs:label "Triple Quad 6500+"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1002596 obo:IAO_0000115 "The SEQUEST-like sequence search engine ProLuCID, developed in the Yates Lab at the Scripps Research Institute."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002596"^^xsd:string ; a owl:Class ; rdfs:label "ProLuCID"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002597 obo:IAO_0000115 "MS1 file format for MS1 spectral data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002597"^^xsd:string ; a owl:Class ; rdfs:label "MS1 format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1002598 obo:IAO_0000115 "Analysis software designed to reassemble the SEQUEST peptide identifications and to highlight the most significant matches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002598"^^xsd:string ; a owl:Class ; rdfs:label "DTASelect"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002599 obo:IAO_0000115 "Spectral Hash key, an unique identifier for spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002599"^^xsd:string ; a owl:Class ; rdfs:label "splash key"^^xsd:string ; rdfs:subClassOf obo:MS_1001405, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002600 obo:IAO_0000115 "Internal data and submission format of the PRIDE database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002600"^^xsd:string ; a owl:Class ; rdfs:label "PRIDE XML"^^xsd:string ; rdfs:subClassOf obo:MS_1001405, obo:MS_1002130 . obo:MS_1002601 obo:IAO_0000115 "Tabular result format for proteomics and metabolomics experiments."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002601"^^xsd:string ; a owl:Class ; rdfs:label "mzTab"^^xsd:string ; rdfs:subClassOf obo:MS_1000914 . obo:MS_1002602 obo:IAO_0000115 "Reagent used in labeled quantification methods."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002602"^^xsd:string ; a owl:Class ; rdfs:label "sample label"^^xsd:string ; rdfs:subClassOf obo:MS_1000548, obo:MS_1002111 . obo:MS_1002603 obo:IAO_0000115 "Isotope coded affinity tag reagent."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002603"^^xsd:string ; a owl:Class ; rdfs:label "ICAT reagent"^^xsd:string ; rdfs:subClassOf obo:MS_1002602 . obo:MS_1002604 obo:IAO_0000115 "The name of the sample labelled with the heavy ICAT label."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002604"^^xsd:string ; a owl:Class ; rdfs:label "ICAT heavy reagent"^^xsd:string ; rdfs:subClassOf obo:MS_1002603 . obo:MS_1002605 obo:IAO_0000115 "The name of the sample labelled with the light ICAT label."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002605"^^xsd:string ; a owl:Class ; rdfs:label "ICAT light reagent"^^xsd:string ; rdfs:subClassOf obo:MS_1002603 . obo:MS_1002606 obo:IAO_0000115 "Isotope coded protein labeling reagent."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002606"^^xsd:string ; a owl:Class ; rdfs:label "ICPL reagent"^^xsd:string ; rdfs:subClassOf obo:MS_1002602 . obo:MS_1002607 obo:IAO_0000115 "The name of the sample labelled with the ICPL reagent 0."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002607"^^xsd:string ; a owl:Class ; rdfs:label "ICPL reagent 0"^^xsd:string ; rdfs:subClassOf obo:MS_1002606 . obo:MS_1002608 obo:IAO_0000115 "The name of the sample labelled with the ICPL reagent 4."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002608"^^xsd:string ; a owl:Class ; rdfs:label "ICPL reagent 4"^^xsd:string ; rdfs:subClassOf obo:MS_1002606 . obo:MS_1002609 obo:IAO_0000115 "The name of the sample labelled with the ICPL reagent 6."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002609"^^xsd:string ; a owl:Class ; rdfs:label "ICPL reagent 6"^^xsd:string ; rdfs:subClassOf obo:MS_1002606 . obo:MS_1002610 obo:IAO_0000115 "The name of the sample labelled with the ICPL reagent 10."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002610"^^xsd:string ; a owl:Class ; rdfs:label "ICPL reagent 10"^^xsd:string ; rdfs:subClassOf obo:MS_1002606 . obo:MS_1002611 obo:IAO_0000115 "Stable isotope labeling with amino acids in cell culture reagent."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002611"^^xsd:string ; a owl:Class ; rdfs:label "SILAC reagent"^^xsd:string ; rdfs:subClassOf obo:MS_1002602 . obo:MS_1002612 obo:IAO_0000115 "The name of the sample labelled with the heavy SILAC label."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002612"^^xsd:string ; a owl:Class ; rdfs:label "SILAC heavy reagent"^^xsd:string ; rdfs:subClassOf obo:MS_1002611 . obo:MS_1002613 obo:IAO_0000115 "The name of the sample labelled with the medium SILAC label."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002613"^^xsd:string ; a owl:Class ; rdfs:label "SILAC medium reagent"^^xsd:string ; rdfs:subClassOf obo:MS_1002611 . obo:MS_1002614 obo:IAO_0000115 "The name of the sample labelled with the light SILAC label."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002614"^^xsd:string ; a owl:Class ; rdfs:label "SILAC light reagent"^^xsd:string ; rdfs:subClassOf obo:MS_1002611 . obo:MS_1002615 obo:IAO_0000115 "Tandem mass tag reagent used in TMT, glycoTMT, iodoTMT, aminoxyTMT or hydrazideTMT isobaric labeling."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002615"^^xsd:string ; a owl:Class ; rdfs:label "TMT reagent"^^xsd:string ; rdfs:subClassOf obo:MS_1002602 . obo:MS_1002616 obo:IAO_0000115 "The name of the sample labelled with the TMT reagent 126."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002616"^^xsd:string ; a owl:Class ; rdfs:label "TMT reagent 126"^^xsd:string ; rdfs:subClassOf obo:MS_1002615 . obo:MS_1002617 obo:IAO_0000115 "The name of the sample labelled with the TMT reagent 127."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002617"^^xsd:string ; a owl:Class ; rdfs:label "TMT reagent 127"^^xsd:string ; rdfs:subClassOf obo:MS_1002615 . obo:MS_1002618 obo:IAO_0000115 "The name of the sample labelled with the TMT reagent 128."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002618"^^xsd:string ; a owl:Class ; rdfs:label "TMT reagent 128"^^xsd:string ; rdfs:subClassOf obo:MS_1002615 . obo:MS_1002619 obo:IAO_0000115 "The name of the sample labelled with the TMT reagent 129."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002619"^^xsd:string ; a owl:Class ; rdfs:label "TMT reagent 129"^^xsd:string ; rdfs:subClassOf obo:MS_1002615 . obo:MS_1002620 obo:IAO_0000115 "The name of the sample labelled with the TMT reagent 130."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002620"^^xsd:string ; a owl:Class ; rdfs:label "TMT reagent 130"^^xsd:string ; rdfs:subClassOf obo:MS_1002615 . obo:MS_1002621 obo:IAO_0000115 "The name of the sample labelled with the TMT reagent 131."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002621"^^xsd:string ; a owl:Class ; rdfs:label "TMT reagent 131"^^xsd:string ; rdfs:subClassOf obo:MS_1002615 . obo:MS_1002622 obo:IAO_0000115 "Isobaric tag for relative and absolute quantitation (iTRAQ or iTRAQH) reagent."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002622"^^xsd:string ; a owl:Class ; rdfs:label "iTRAQ reagent"^^xsd:string ; rdfs:subClassOf obo:MS_1002602 . obo:MS_1002623 obo:IAO_0000115 "The name of the sample labelled with the iTRAQ reagent 113."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002623"^^xsd:string ; a owl:Class ; rdfs:label "iTRAQ reagent 113"^^xsd:string ; rdfs:subClassOf obo:MS_1002622 . obo:MS_1002624 obo:IAO_0000115 "The name of the sample labelled with the iTRAQ reagent 114."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002624"^^xsd:string ; a owl:Class ; rdfs:label "iTRAQ reagent 114"^^xsd:string ; rdfs:subClassOf obo:MS_1002622 . obo:MS_1002625 obo:IAO_0000115 "The name of the sample labelled with the iTRAQ reagent 115."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002625"^^xsd:string ; a owl:Class ; rdfs:label "iTRAQ reagent 115"^^xsd:string ; rdfs:subClassOf obo:MS_1002622 . obo:MS_1002626 obo:IAO_0000115 "The name of the sample labelled with the iTRAQ reagent 116."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002626"^^xsd:string ; a owl:Class ; rdfs:label "iTRAQ reagent 116"^^xsd:string ; rdfs:subClassOf obo:MS_1002622 . obo:MS_1002627 obo:IAO_0000115 "The name of the sample labelled with the iTRAQ reagent 117."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002627"^^xsd:string ; a owl:Class ; rdfs:label "iTRAQ reagent 117"^^xsd:string ; rdfs:subClassOf obo:MS_1002622 . obo:MS_1002628 obo:IAO_0000115 "The name of the sample labelled with the iTRAQ reagent 118."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002628"^^xsd:string ; a owl:Class ; rdfs:label "iTRAQ reagent 118"^^xsd:string ; rdfs:subClassOf obo:MS_1002622 . obo:MS_1002629 obo:IAO_0000115 "The name of the sample labelled with the iTRAQ reagent 119."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002629"^^xsd:string ; a owl:Class ; rdfs:label "iTRAQ reagent 119"^^xsd:string ; rdfs:subClassOf obo:MS_1002622 . obo:MS_1002630 obo:IAO_0000115 "The name of the sample labelled with the iTRAQ reagent 121."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002630"^^xsd:string ; a owl:Class ; rdfs:label "iTRAQ reagent 121"^^xsd:string ; rdfs:subClassOf obo:MS_1002622 . obo:MS_1002631 obo:IAO_0000115 "Dissociation process combining electron-transfer dissociation and higher-energy collision dissociation. It combines ETD (reaction time) followed by HCD (activation energy)."^^xsd:string ; oboInOwl:hasExactSynonym "EThcD"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002631"^^xsd:string ; a owl:Class ; rdfs:label "electron-transfer/higher-energy collision dissociation"^^xsd:string ; rdfs:subClassOf obo:MS_1003181 . obo:MS_1002632 obo:IAO_0000115 "Dataset identifier issued by the jPOST repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002632"^^xsd:string ; a owl:Class ; rdfs:label "jPOST dataset identifier"^^xsd:string ; rdfs:subClassOf obo:MS_1000878, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002633 obo:IAO_0000115 "URI that allows the access to one dataset in the jPOST repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002633"^^xsd:string ; a owl:Class ; rdfs:label "jPOST dataset URI"^^xsd:string ; rdfs:subClassOf obo:MS_1000878, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_anyURI ] . obo:MS_1002634 obo:IAO_0000115 "Thermo Scientific Q Exactive Plus."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002634"^^xsd:string ; a owl:Class ; rdfs:label "Q Exactive Plus"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1002635 obo:IAO_0000115 "Proteogenomics search performed."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002635"^^xsd:string ; a owl:Class ; rdfs:label "proteogenomics search"^^xsd:string ; rdfs:subClassOf obo:MS_1002489 . obo:MS_1002636 obo:IAO_0000115 "Proteogenomics attribute."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002636"^^xsd:string ; a owl:Class ; rdfs:label "proteogenomics attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1001105 . obo:MS_1002637 obo:IAO_0000115 "The name or number of the chromosome to which a given peptide has been mapped."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002637"^^xsd:string ; a owl:Class ; rdfs:label "chromosome name"^^xsd:string ; rdfs:subClassOf obo:MS_1002636, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002638 obo:IAO_0000115 "The strand (+ or -) to which the peptide has been mapped."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002638"^^xsd:string ; a owl:Class ; rdfs:label "chromosome strand"^^xsd:string ; rdfs:subClassOf obo:MS_1002636, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002639 obo:IAO_0000115 "OBSOLETE The overall start position on the chromosome to which a peptide has been mapped i.e. the position of the first base of the first codon, using a zero-based counting system."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002639"^^xsd:string ; a owl:Class ; rdfs:comment "This term was obsoleted because it contains redundant info contained in term MS:1002643 - peptide start positions on chromosome."^^xsd:string ; rdfs:label "peptide start on chromosome"^^xsd:string ; rdfs:subClassOf obo:MS_1002636, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] ; owl:deprecated true . obo:MS_1002640 obo:IAO_0000115 "The overall end position on the chromosome to which a peptide has been mapped i.e. the position of the third base of the last codon, using a zero-based counting system."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002640"^^xsd:string ; a owl:Class ; rdfs:label "peptide end on chromosome"^^xsd:string ; rdfs:subClassOf obo:MS_1002636, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002641 obo:IAO_0000115 "The number of exons to which the peptide has been mapped."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002641"^^xsd:string ; a owl:Class ; rdfs:label "peptide exon count"^^xsd:string ; rdfs:subClassOf obo:MS_1002636, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002642 obo:IAO_0000115 "A comma separated list of the number of DNA bases within each exon to which a peptide has been mapped. Assuming standard operation of a search engine, the peptide exon sizes should sum to exactly three times the peptide length."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002642"^^xsd:string ; a owl:Class ; rdfs:label "peptide exon nucleotide sizes"^^xsd:string ; rdfs:subClassOf obo:MS_1002636, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002643 obo:IAO_0000115 "A comma separated list of start positions within exons to which the peptide has been mapped, relative to peptide-chromosome start, assuming a zero-based counting system. The first value MUST match the value in peptide start on chromosome."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002643"^^xsd:string ; a owl:Class ; rdfs:label "peptide start positions on chromosome"^^xsd:string ; rdfs:subClassOf obo:MS_1002636, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002644 obo:IAO_0000115 "The reference genome and versioning string as used for mapping. All coordinates are within this frame of reference."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002644"^^xsd:string ; a owl:Class ; rdfs:label "genome reference version"^^xsd:string ; rdfs:subClassOf obo:MS_1002636, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002645 obo:IAO_0000115 "Mass Spectrometry Development Kit (MSDK) is a Java library of algorithms for processing of mass spectrometry data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002645"^^xsd:string ; a owl:Class ; rdfs:label "MSDK"^^xsd:string ; rdfs:subClassOf obo:MS_1001456, obo:MS_1001457 . obo:MS_1002646 obo:IAO_0000115 "Describes how the native spectrum identifiers that have been combined prior to searching or interpretation are formated."^^xsd:string ; oboInOwl:hasExactSynonym "nativeID format, combined spectra"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002646"^^xsd:string ; a owl:Class ; rdfs:label "native spectrum identifier format, combined spectra"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000577 ] . obo:MS_1002647 obo:IAO_0000115 "Thermo comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002647"^^xsd:string ; a owl:Class ; rdfs:label "Thermo nativeID format, combined spectra"^^xsd:string ; rdfs:subClassOf obo:MS_1002646, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002648 obo:IAO_0000115 "Waters comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002648"^^xsd:string ; a owl:Class ; rdfs:label "Waters nativeID format, combined spectra"^^xsd:string ; rdfs:subClassOf obo:MS_1002646, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002649 obo:IAO_0000115 "WIFF comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002649"^^xsd:string ; a owl:Class ; rdfs:label "WIFF nativeID format, combined spectra"^^xsd:string ; rdfs:subClassOf obo:MS_1002646, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002650 obo:IAO_0000115 "Bruker/Agilent comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002650"^^xsd:string ; a owl:Class ; rdfs:label "Bruker/Agilent YEP nativeID format, combined spectra"^^xsd:string ; rdfs:subClassOf obo:MS_1002646, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002651 obo:IAO_0000115 "Bruker BAF comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002651"^^xsd:string ; a owl:Class ; rdfs:label "Bruker BAF nativeID format, combined spectra"^^xsd:string ; rdfs:subClassOf obo:MS_1002646, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002652 obo:IAO_0000115 "Bruker FID comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002652"^^xsd:string ; a owl:Class ; rdfs:comment "The nativeID must be the same as the source file ID."^^xsd:string ; rdfs:label "Bruker FID nativeID format, combined spectra"^^xsd:string ; rdfs:subClassOf obo:MS_1002646, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002653 obo:IAO_0000115 "Comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002653"^^xsd:string ; a owl:Class ; rdfs:comment "Used for conversion of peak list files with multiple spectra, i.e. MGF, PKL, merged DTA files. Index is the spectrum number in the file, starting from 0."^^xsd:string ; rdfs:label "multiple peak list nativeID format, combined spectra"^^xsd:string ; rdfs:subClassOf obo:MS_1002646, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002654 obo:IAO_0000115 "Comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002654"^^xsd:string ; a owl:Class ; rdfs:comment "The nativeID must be the same as the source file ID. Used for conversion of peak list files with one spectrum per file, typically folder of PKL or DTAs, each sourceFileRef is different."^^xsd:string ; rdfs:label "single peak list nativeID format, combined spectra"^^xsd:string ; rdfs:subClassOf obo:MS_1002646, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002655 obo:IAO_0000115 "Comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002655"^^xsd:string ; a owl:Class ; rdfs:comment "Used for conversion from mzXML, or DTA folder where native scan numbers can be derived."^^xsd:string ; rdfs:label "scan number only nativeID format, combined spectra"^^xsd:string ; rdfs:subClassOf obo:MS_1002646, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002656 obo:IAO_0000115 "Comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002656"^^xsd:string ; a owl:Class ; rdfs:comment "Used for conversion from mzData. The spectrum id attribute is referenced."^^xsd:string ; rdfs:label "spectrum identifier nativeID format, combined spectra"^^xsd:string ; rdfs:subClassOf obo:MS_1002646, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002657 obo:IAO_0000115 "Comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002657"^^xsd:string ; a owl:Class ; rdfs:comment "A unique identifier of a spectrum stored in an mzML file."^^xsd:string ; rdfs:label "mzML unique identifier, combined spectra"^^xsd:string ; rdfs:subClassOf obo:MS_1002646, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002658 obo:IAO_0000115 "Identification parameter for the search engine run."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002658"^^xsd:string ; a owl:Class ; rdfs:label "identification parameter"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001000 ] . obo:MS_1002659 obo:IAO_0000115 "Text-based format used by UniProtKB for sequence entries."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002659"^^xsd:string ; a owl:Class ; rdfs:label "UniProtKB text sequence format"^^xsd:string ; rdfs:subClassOf obo:MS_1001347 . obo:MS_1002660 obo:IAO_0000115 "XML-based format used by UniProtKB for sequence entries."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002660"^^xsd:string ; a owl:Class ; rdfs:label "UniProtKB XML sequence format"^^xsd:string ; rdfs:subClassOf obo:MS_1001347 . obo:MS_1002661 obo:IAO_0000115 "Morpheus search engine."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002661"^^xsd:string ; a owl:Class ; rdfs:label "Morpheus"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002662 obo:IAO_0000115 "Morpheus score for PSMs."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002662"^^xsd:string ; a owl:Class ; rdfs:label "Morpheus:Morpheus score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002663 obo:IAO_0000115 "Summed Morpheus score for protein groups."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002663"^^xsd:string ; a owl:Class ; rdfs:label "Morpheus:summed Morpheus score"^^xsd:string ; rdfs:subClassOf obo:MS_1002368, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002664 obo:IAO_0000115 "Parent term for interaction scores derived from cross-linking."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002664"^^xsd:string ; a owl:Class ; rdfs:label "interaction score derived from cross-linking"^^xsd:string ; rdfs:subClassOf obo:MS_1002675, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002665 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002665 obo:IAO_0000115 "([:digit:]+[.][a|b]:([:digit:]+|null):[:digit:]+[.][:digit:]+([Ee][+-][0-9]+)*:(true|false]{1}))."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002665"^^xsd:string ; a owl:Class ; rdfs:label "regular expression for interaction scores derived from cross-linking"^^xsd:string ; rdfs:subClassOf obo:MS_1002479 . obo:MS_1002666 obo:IAO_0000115 "Bruker Daltonics' impact II."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002666"^^xsd:string ; a owl:Class ; rdfs:label "impact II"^^xsd:string ; rdfs:subClassOf obo:MS_1001536 . obo:MS_1002667 obo:IAO_0000115 "Bruker Daltonics' impact HD."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002667"^^xsd:string ; a owl:Class ; rdfs:label "impact HD"^^xsd:string ; rdfs:subClassOf obo:MS_1001536 . obo:MS_1002668 obo:IAO_0000115 "Standard reporter ion for iTRAQ 4Plex. The value slot holds the integer mass of the iTRAQ 4Plex reporter ion, e.g. 114."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002668"^^xsd:string ; a owl:Class ; rdfs:label "frag: iTRAQ 4plex reporter ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002307, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002669 obo:IAO_0000115 "Standard reporter ion for iTRAQ 8Plex. The value slot holds the integer mass of the iTRAQ 8Plex reporter ion, e.g. 113."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002669"^^xsd:string ; a owl:Class ; rdfs:label "frag: iTRAQ 8plex reporter ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002307, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002670 obo:IAO_0000115 "Standard reporter ion for TMT. The value slot holds the integer mass of the TMT reporter ion and can be suffixed with either N or C, indicating whether the mass difference is encoded at a Nitrogen or Carbon atom, e.g. 127N."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002670"^^xsd:string ; a owl:Class ; rdfs:label "frag: TMT reporter ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002307, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002671 obo:IAO_0000115 "Standard reporter ion for TMT with ETD fragmentation. The value slot holds the integer mass of the TMT ETD reporter ion and can be suffixed with either N or C, indicating whether the mass difference is encoded at a Nitrogen or Carbon atom, e.g. 127C."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002671"^^xsd:string ; a owl:Class ; rdfs:label "frag: TMT ETD reporter ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002307, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002672 obo:IAO_0000115 "No statistical threshold for accepting or rejecting that a modification position."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002672"^^xsd:string ; a owl:Class ; rdfs:label "no modification threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002555 . obo:MS_1002673 obo:IAO_0000115 "Cross-Linking MS search engine."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002673"^^xsd:string ; a owl:Class ; rdfs:label "OpenXQuest"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1002674 obo:IAO_0000115 "SCIEX X500R QTOF, a quadrupole - quadrupole - time-of-flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002674"^^xsd:string ; a owl:Class ; rdfs:label "X500R QTOF"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1002675 obo:IAO_0000115 "This subsection describes terms which can describe details of cross-linking results."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002675"^^xsd:string ; a owl:Class ; rdfs:label "cross-linking result details"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001000 ] . obo:MS_1002676 obo:IAO_0000115 "Estimation of the global false discovery rate of proteins-pairs in cross-linking experiments."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002676"^^xsd:string ; a owl:Class ; rdfs:label "protein-pair-level global FDR"^^xsd:string ; rdfs:subClassOf obo:MS_1002664, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002665 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002677 obo:IAO_0000115 "Estimation of the global false discovery rate of residue-pairs in cross-linking experiments."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002677"^^xsd:string ; a owl:Class ; rdfs:label "residue-pair-level global FDR"^^xsd:string ; rdfs:subClassOf obo:MS_1002664, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002665 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002678 obo:IAO_0000115 "A supplemental collision-induced dissociation process that occurs in a beam-type collision cell in addition to another primary type of dissociation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002678"^^xsd:string ; a owl:Class ; rdfs:label "supplemental beam-type collision-induced dissociation"^^xsd:string ; rdfs:subClassOf obo:MS_1000422 . obo:MS_1002679 obo:IAO_0000115 "The dissociation of an ion after supplemental collisional excitation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002679"^^xsd:string ; a owl:Class ; rdfs:label "supplemental collision-induced dissociation"^^xsd:string ; rdfs:subClassOf obo:MS_1000133 . obo:MS_1002680 obo:IAO_0000115 "Energy for an ion experiencing supplemental collision with a stationary gas particle resulting in dissociation of the ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002680"^^xsd:string ; a owl:Class ; rdfs:label "supplemental collision energy"^^xsd:string ; rdfs:subClassOf obo:MS_1000510, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000266 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002681 obo:IAO_0000115 "OpenXQuest's combined score for a cross-link spectrum match."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002681"^^xsd:string ; a owl:Class ; rdfs:label "OpenXQuest:combined score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1001153, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002682 obo:IAO_0000115 "OpenXQuest's cross-correlation of cross-linked ions subscore."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002682"^^xsd:string ; a owl:Class ; rdfs:label "OpenXQuest:xcorr xlink"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1001153, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002683 obo:IAO_0000115 "OpenXQuest's cross-correlation of unlinked ions subscore."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002683"^^xsd:string ; a owl:Class ; rdfs:label "OpenXQuest:xcorr common"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1001153, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002684 obo:IAO_0000115 "OpenXQuest's match-odds subscore."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002684"^^xsd:string ; a owl:Class ; rdfs:label "OpenXQuest:match-odds"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1001153, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002306 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002685 obo:IAO_0000115 "OpenXQuest's sum of matched peak intensity subscore."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002685"^^xsd:string ; a owl:Class ; rdfs:label "OpenXQuest:intsum"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1001153, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002306 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002686 obo:IAO_0000115 "OpenXQuest's weighted percent of total ion current subscore."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002686"^^xsd:string ; a owl:Class ; rdfs:label "OpenXQuest:wTIC"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1001153, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002687 obo:IAO_0000115 "Attribute of an item in the result of mass spectrometry proteomics data analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002687"^^xsd:string ; a owl:Class ; rdfs:label "analysis attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1001405 . obo:MS_1002688 obo:IAO_0000115 "Statistic derived from a post-translational modification localization analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002688"^^xsd:string ; a owl:Class ; rdfs:label "PTM localization attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1002687 . obo:MS_1002689 obo:IAO_0000115 "Statistic for a single item derived from a post-translational modification localization analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002689"^^xsd:string ; a owl:Class ; rdfs:label "PTM localization single result statistic"^^xsd:string ; rdfs:subClassOf obo:MS_1002688 . obo:MS_1002690 obo:IAO_0000115 "Statistic for all items derived from a post-translational modification localization analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002690"^^xsd:string ; a owl:Class ; rdfs:label "PTM localization result list statistic"^^xsd:string ; rdfs:subClassOf obo:MS_1002688 . obo:MS_1002691 obo:IAO_0000115 "Global false localization rate for all localizations in a dataset."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002691"^^xsd:string ; a owl:Class ; rdfs:label "global FLR"^^xsd:string ; rdfs:subClassOf obo:MS_1002690 . obo:MS_1002692 obo:IAO_0000115 "Local false localization rate for the bottom item in list of localizations sorted from most to least confident."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002692"^^xsd:string ; a owl:Class ; rdfs:label "local FLR at threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002690 . obo:MS_1002693 obo:IAO_0000115 "Attribute of an identification item in the result of mass spectrometry proteomics data analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002693"^^xsd:string ; a owl:Class ; rdfs:label "identification attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1002687 . obo:MS_1002694 obo:IAO_0000115 "Attribute of a single identification item (as opposed to a list) in the result of mass spectrometry proteomics data analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002694"^^xsd:string ; a owl:Class ; rdfs:label "single identification result attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1002693 . obo:MS_1002695 obo:IAO_0000115 "Fragment ion corresponding to an isobaric label artifact."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002695"^^xsd:string ; a owl:Class ; rdfs:label "frag: isobaric label ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1002697 obo:IAO_0000115 "Fragment ion is an isotopic peak other than that monoisotopic peak. This is used in conjuction with another ion type, such as frag: y ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002697"^^xsd:string ; a owl:Class ; rdfs:label "secondary isotope peak"^^xsd:string ; rdfs:subClassOf obo:MS_1002307 . obo:MS_1002698 obo:IAO_0000115 "An attribute of the protein cluster concept as used in mzIdentML."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002698"^^xsd:string ; a owl:Class ; rdfs:label "protein cluster identification attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1002694 . obo:MS_1002699 obo:IAO_0000115 "General property of an entire result list."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002699"^^xsd:string ; a owl:Class ; rdfs:label "result list attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1002693 . obo:MS_1002700 obo:IAO_0000115 "General property of the list of all PSMs."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002700"^^xsd:string ; a owl:Class ; rdfs:label "PSM-level result list attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1002699 . obo:MS_1002701 obo:IAO_0000115 "Statistic pertaining to the full list of all PSMs."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002701"^^xsd:string ; a owl:Class ; rdfs:label "PSM-level result list statistic"^^xsd:string ; rdfs:subClassOf obo:MS_1002700 . obo:MS_1002702 obo:IAO_0000115 "General property of all peptide sequences in the list."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002702"^^xsd:string ; a owl:Class ; rdfs:label "peptide sequence-level result list attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1002699 . obo:MS_1002703 obo:IAO_0000115 "Statistic pertaining to all peptide sequences in the list."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002703"^^xsd:string ; a owl:Class ; rdfs:label "peptide sequence-level result list statistic"^^xsd:string ; rdfs:subClassOf obo:MS_1002702 . obo:MS_1002704 obo:IAO_0000115 "Attribute of an entire protein list."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002704"^^xsd:string ; a owl:Class ; rdfs:label "protein-level result list attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1002699 . obo:MS_1002705 obo:IAO_0000115 "A statistical metric of an entire protein list."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002705"^^xsd:string ; a owl:Class ; rdfs:label "protein-level result list statistic"^^xsd:string ; rdfs:subClassOf obo:MS_1002704 . obo:MS_1002706 obo:IAO_0000115 "Attrbiute of an entire list of protein groups."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002706"^^xsd:string ; a owl:Class ; rdfs:label "protein group-level result list statistic"^^xsd:string ; rdfs:subClassOf obo:MS_1002405 . obo:MS_1002707 obo:IAO_0000115 "Regular expression for LysargiNase."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002707"^^xsd:string ; a owl:Class ; rdfs:label "(?=[KR])"^^xsd:string ; rdfs:subClassOf obo:MS_1001180 . obo:MS_1002708 obo:IAO_0000115 "Metalloproteinase found in Methanosarcina acetivorans that cleaves on the N-terminal side of lysine and arginine residues."^^xsd:string ; oboInOwl:hasExactSynonym "Tryp-N"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002708"^^xsd:string ; a owl:Class ; rdfs:label "LysargiNase"^^xsd:string ; rdfs:subClassOf obo:MS_1001045, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002707 ] . obo:MS_1002709 obo:IAO_0000115 "A data type representing more than a single value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002709"^^xsd:string ; a owl:Class ; rdfs:label "compound data type"^^xsd:string . obo:MS_1002710 obo:IAO_0000115 "A data type defining a list of values of a single type."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002710"^^xsd:string ; a owl:Class ; rdfs:label "list of type"^^xsd:string ; rdfs:subClassOf obo:MS_1002709 . obo:MS_1002711 obo:IAO_0000115 "A list of xsd:string."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002711"^^xsd:string ; a owl:Class ; rdfs:label "list of strings"^^xsd:string ; rdfs:subClassOf obo:MS_1002710, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002712 obo:IAO_0000115 "A list of xsd:integer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002712"^^xsd:string ; a owl:Class ; rdfs:label "list of integers"^^xsd:string ; rdfs:subClassOf obo:MS_1002710, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1002713 obo:IAO_0000115 "A list of xsd:float."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002713"^^xsd:string ; a owl:Class ; rdfs:label "list of floats"^^xsd:string ; rdfs:subClassOf obo:MS_1002710, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002719 obo:IAO_0000115 "LECO bench-top GC time-of-flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002719"^^xsd:string ; a owl:Class ; rdfs:label "Pegasus BT"^^xsd:string ; rdfs:subClassOf obo:MS_1001800 . obo:MS_1002720 obo:IAO_0000115 "PNNL top-down/bottom-up analysis software for identifying peptides and proteoforms in fragmentation mass spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002720"^^xsd:string ; a owl:Class ; rdfs:label "MSPathFinder"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002721 obo:IAO_0000115 "MSPathFinder spectral E-value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002721"^^xsd:string ; a owl:Class ; rdfs:label "MSPathFinder:SpecEValue"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1002353, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002109 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002722 obo:IAO_0000115 "MSPathFinder E-value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002722"^^xsd:string ; a owl:Class ; rdfs:label "MSPathFinder:EValue"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1002353, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002109 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002723 obo:IAO_0000115 "MSPathFinder Q-value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002723"^^xsd:string ; a owl:Class ; rdfs:label "MSPathFinder:QValue"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1002354, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002724 obo:IAO_0000115 "MSPathFinder peptide-level Q-value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002724"^^xsd:string ; a owl:Class ; rdfs:label "MSPathFinder:PepQValue"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002725 obo:IAO_0000115 "MSPathFinder raw score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002725"^^xsd:string ; a owl:Class ; rdfs:label "MSPathFinder:RawScore"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002726 obo:IAO_0000115 "Waters Corporation SYNAPT G2-Si orthogonal acceleration time-of-flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002726"^^xsd:string ; a owl:Class ; rdfs:label "SYNAPT G2-Si"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1002727 obo:IAO_0000115 "Waters Corporation MALDI SYNAPT G2-Si orthogonal acceleration time-of-flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002727"^^xsd:string ; a owl:Class ; rdfs:label "MALDI SYNAPT G2-Si"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1002728 obo:IAO_0000115 "Waters Corporation Vion IMS QTof orthogonal acceleration time-of-flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002728"^^xsd:string ; a owl:Class ; rdfs:label "Vion IMS QTof"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1002729 obo:IAO_0000115 "Waters Corporation Xevo G2 XS Tof orthogonal acceleration time-of-flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002729"^^xsd:string ; a owl:Class ; rdfs:label "Xevo G2-XS Tof"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1002730 obo:IAO_0000115 "Waters Corporation Xevo TQ-XS triple quadrupole mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002730"^^xsd:string ; a owl:Class ; rdfs:label "Xevo TQ-XS"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1002731 obo:IAO_0000115 "Waters Corporation Xevo TQ-S micro triple quadrupole mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002731"^^xsd:string ; a owl:Class ; rdfs:label "Xevo TQ-S micro"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1002732 obo:IAO_0000115 "Thermo Scientific Orbitrap Fusion Lumos mass spectrometer with Tribrid architecture consisting of quadrupole mass filter, linear ion trap and Orbitrap mass analyzers."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002732"^^xsd:string ; a owl:Class ; rdfs:label "Orbitrap Fusion Lumos"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1002733 obo:IAO_0000115 "The number of MS2 spectra identified for a peptide sequence specified by the amino acid one-letter codes plus optional PTMs in spectral counting."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002733"^^xsd:string ; a owl:Class ; rdfs:label "peptide-level spectral count"^^xsd:string ; rdfs:subClassOf obo:MS_1002737, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002734 obo:IAO_0000115 "The number of MS2 spectra identified for a molecular ion defined by the peptide sequence represented by the amino acid one-letter codes, plus optional PTMs plus optional charged aducts plus the charge state, in spectral counting."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002734"^^xsd:string ; a owl:Class ; rdfs:label "peptide ion-level spectral count"^^xsd:string ; rdfs:subClassOf obo:MS_1002737, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1002735 obo:IAO_0000115 "The data type of the value reported in a QuantLayer for a feature."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002735"^^xsd:string ; a owl:Class ; rdfs:label "feature-level quantification datatype"^^xsd:string ; rdfs:subClassOf obo:MS_1001805 . obo:MS_1002736 obo:IAO_0000115 "The data type of the value reported in a QuantLayer for a PSM."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002736"^^xsd:string ; a owl:Class ; rdfs:label "PSM-level quantification datatype"^^xsd:string ; rdfs:subClassOf obo:MS_1001805 . obo:MS_1002737 obo:IAO_0000115 "The data type of the value reported in a QuantLayer for a peptide."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002737"^^xsd:string ; a owl:Class ; rdfs:label "peptide-level quantification datatype"^^xsd:string ; rdfs:subClassOf obo:MS_1001805 . obo:MS_1002738 obo:IAO_0000115 "The data type of the value reported in a QuantLayer for a protein."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002738"^^xsd:string ; a owl:Class ; rdfs:label "protein-level quantification datatype"^^xsd:string ; rdfs:subClassOf obo:MS_1001805 . obo:MS_1002739 obo:IAO_0000115 "The data type of the value reported in a QuantLayer for a protein group."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002739"^^xsd:string ; a owl:Class ; rdfs:label "protein group-level quantification datatype"^^xsd:string ; rdfs:subClassOf obo:MS_1001805 . obo:MS_1002740 obo:IAO_0000115 "Within the context of a proteogenomics approach, a peptide sequence that has not been mapped to a genomic location."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002740"^^xsd:string ; a owl:Class ; rdfs:label "unmapped peptide"^^xsd:string ; rdfs:subClassOf obo:MS_1002636 . obo:MS_1002741 obo:IAO_0000115 "Within the context of a proteogenomics approach, a protein sequence that has not been mapped to a genomic location."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002741"^^xsd:string ; a owl:Class ; rdfs:label "unmapped protein"^^xsd:string ; rdfs:subClassOf obo:MS_1002636 . obo:MS_1002742 obo:IAO_0000115 "A data array of noise values."^^xsd:string ; oboInOwl:hasDbXref "binary-data-type:MS:1000521"^^xsd:string, "binary-data-type:MS:1000523"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002742"^^xsd:string ; a owl:Class ; rdfs:label "noise array"^^xsd:string ; rdfs:subClassOf obo:MS_1000513 . obo:MS_1002743 obo:IAO_0000115 "A data array of parallel, independent m/z values for a sampling of noise across a spectrum (typically much smaller than MS:1000514, the m/z array)."^^xsd:string ; oboInOwl:hasDbXref "binary-data-type:MS:1000521"^^xsd:string, "binary-data-type:MS:1000523"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002743"^^xsd:string ; a owl:Class ; rdfs:label "sampled noise m/z array"^^xsd:string ; rdfs:subClassOf obo:MS_1000513, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ] . obo:MS_1002744 obo:IAO_0000115 "A data array of intensity values for the amplitude of noise variation superposed on the baseline (MS:1002745) across a spectrum (for use with MS:1002743, sampled noise m/z array)."^^xsd:string ; oboInOwl:hasDbXref "binary-data-type:MS:1000521"^^xsd:string, "binary-data-type:MS:1000523"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002744"^^xsd:string ; a owl:Class ; rdfs:label "sampled noise intensity array"^^xsd:string ; rdfs:subClassOf obo:MS_1000513, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000131 ] . obo:MS_1002745 obo:IAO_0000115 "A data array of baseline intensity values (the intensity in the absence of analytes) for a sampling of noise across a spectrum (for use with MS:1002743, sampled noise m/z array)."^^xsd:string ; oboInOwl:hasDbXref "binary-data-type:MS:1000521"^^xsd:string, "binary-data-type:MS:1000523"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002745"^^xsd:string ; a owl:Class ; rdfs:label "sampled noise baseline array"^^xsd:string ; rdfs:subClassOf obo:MS_1000513 . obo:MS_1002746 obo:IAO_0000115 "Compression using MS-Numpress linear prediction compression and zlib."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002746"^^xsd:string ; a owl:Class ; rdfs:label "MS-Numpress linear prediction compression followed by zlib compression"^^xsd:string ; rdfs:subClassOf obo:MS_1000572 . obo:MS_1002747 obo:IAO_0000115 "Compression using MS-Numpress positive integer compression and zlib."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002747"^^xsd:string ; a owl:Class ; rdfs:label "MS-Numpress positive integer compression followed by zlib compression"^^xsd:string ; rdfs:subClassOf obo:MS_1000572 . obo:MS_1002748 obo:IAO_0000115 "Compression using MS-Numpress short logged float compression and zlib."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002748"^^xsd:string ; a owl:Class ; rdfs:label "MS-Numpress short logged float compression followed by zlib compression"^^xsd:string ; rdfs:subClassOf obo:MS_1000572 . obo:MS_1002749 obo:IAO_0000115 "Means that Mascot has integrated the search results of database and spectral library search into a single data set."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002749"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:IntegratedSpectralLibrarySearch"^^xsd:string ; rdfs:subClassOf obo:MS_1002095, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002750 obo:IAO_0000115 "Search tool of the NIST (National Institute of Standards and Technology) for spectral library searches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002750"^^xsd:string ; a owl:Class ; rdfs:label "NIST MSPepSearch"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002751 obo:IAO_0000115 "MSP text format defined by the NIST."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002751"^^xsd:string ; a owl:Class ; rdfs:label "NIST MSP format"^^xsd:string ; rdfs:subClassOf obo:MS_1001347 . obo:MS_1002752 obo:IAO_0000115 "Database containing spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002752"^^xsd:string ; a owl:Class ; rdfs:label "database type spectral library"^^xsd:string ; rdfs:subClassOf obo:MS_1001073 . obo:MS_1002753 obo:IAO_0000115 "Value range for scores."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002753"^^xsd:string ; a owl:Class ; rdfs:label "value between 0 and 1000 inclusive"^^xsd:string ; rdfs:subClassOf obo:MS_1002304 . obo:MS_1002754 obo:IAO_0000115 "MSPepSearch score (0 for entirely dissimilar and 1000 for identical observed spectrum and library spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002754"^^xsd:string ; a owl:Class ; rdfs:label "MSPepSearch:score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002753 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ] . obo:MS_1002755 obo:IAO_0000115 "A combined MS2 (with fragment ions) and spectral library search."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002755"^^xsd:string ; a owl:Class ; rdfs:label "combined ms-ms + spectral library search"^^xsd:string ; rdfs:subClassOf obo:MS_1001080 . obo:MS_1002756 obo:IAO_0000115 "Quantitation analysis using the Thermo Fisher sulfhydryl-reactive iodo tandem mass tag (iodoTMT) labelling workflow."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002756"^^xsd:string ; a owl:Class ; rdfs:label "iodoTMT quantitation analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1002009 . obo:MS_1002757 obo:IAO_0000115 "Quantitation analysis using the Thermo Fisher carbonyl-reactive glyco-tandem mass tag (glyco-TMT) labelling workflow."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002757"^^xsd:string ; a owl:Class ; rdfs:label "glyco-TMT quantitation analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1002009 . obo:MS_1002758 obo:IAO_0000115 "Quantitation analysis using the Thermo Fisher carbonyl-reactive aminoxy tandem mass tag (aminoxyTMT) labelling workflow."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002758"^^xsd:string ; a owl:Class ; rdfs:label "aminoxyTMT quantitation analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1002009 . obo:MS_1002759 obo:IAO_0000115 "Quantitation analysis using the Thermo Fisher carbonyl-reactive hydrazide tandem mass tag (hydrazide-TMT) labelling workflow."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002759"^^xsd:string ; a owl:Class ; rdfs:label "hydrazideTMT quantitation analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1002009 . obo:MS_1002760 obo:IAO_0000115 "Quantification analysis using the carbonyl-reactive isobaric tags for relative and absolute quantification hydrazide (iTRAQH) labelling workflow."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002760"^^xsd:string ; a owl:Class ; rdfs:label "iTRAQH quantitation analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1002009 . obo:MS_1002761 obo:IAO_0000115 "Quantification analysis using the amine-reactive deuterium isobaric amine reactive tag (DiART) labelling workflow."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002761"^^xsd:string ; a owl:Class ; rdfs:label "DiART quantitation analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1002009 . obo:MS_1002762 obo:IAO_0000115 "Quantification analysis using the amine-reactive dimethyl leucine (DiLeu) tag labelling workflow."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002762"^^xsd:string ; a owl:Class ; rdfs:label "DiLeu quantitation analysis"^^xsd:string ; rdfs:subClassOf obo:MS_1002009 . obo:MS_1002763 obo:IAO_0000115 "The name of the sample labelled with the TMT reagent 127N."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002763"^^xsd:string ; a owl:Class ; rdfs:label "TMT reagent 127N"^^xsd:string ; rdfs:subClassOf obo:MS_1002615 . obo:MS_1002764 obo:IAO_0000115 "The name of the sample labelled with the TMT reagent 127C."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002764"^^xsd:string ; a owl:Class ; rdfs:label "TMT reagent 127C"^^xsd:string ; rdfs:subClassOf obo:MS_1002615 . obo:MS_1002765 obo:IAO_0000115 "The name of the sample labelled with the TMT reagent 128N."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002765"^^xsd:string ; a owl:Class ; rdfs:label "TMT reagent 128N"^^xsd:string ; rdfs:subClassOf obo:MS_1002615 . obo:MS_1002766 obo:IAO_0000115 "The name of the sample labelled with the TMT reagent 128C."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002766"^^xsd:string ; a owl:Class ; rdfs:label "TMT reagent 128C"^^xsd:string ; rdfs:subClassOf obo:MS_1002615 . obo:MS_1002767 obo:IAO_0000115 "The name of the sample labelled with the TMT reagent 129N."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002767"^^xsd:string ; a owl:Class ; rdfs:label "TMT reagent 129N"^^xsd:string ; rdfs:subClassOf obo:MS_1002615 . obo:MS_1002768 obo:IAO_0000115 "The name of the sample labelled with the TMT reagent 129C."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002768"^^xsd:string ; a owl:Class ; rdfs:label "TMT reagent 129C"^^xsd:string ; rdfs:subClassOf obo:MS_1002615 . obo:MS_1002769 obo:IAO_0000115 "The name of the sample labelled with the TMT reagent 130N."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002769"^^xsd:string ; a owl:Class ; rdfs:label "TMT reagent 130N"^^xsd:string ; rdfs:subClassOf obo:MS_1002615 . obo:MS_1002770 obo:IAO_0000115 "The name of the sample labelled with the TMT reagent 130C."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002770"^^xsd:string ; a owl:Class ; rdfs:label "TMT reagent 130C"^^xsd:string ; rdfs:subClassOf obo:MS_1002615 . obo:MS_1002771 obo:IAO_0000115 "Deuterium isobaric amine reactive tag labeling reagent."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002771"^^xsd:string ; a owl:Class ; rdfs:label "DiART reagent"^^xsd:string ; rdfs:subClassOf obo:MS_1002602 . obo:MS_1002772 obo:IAO_0000115 "The name of the sample labelled with the DiART reagent 114."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002772"^^xsd:string ; a owl:Class ; rdfs:label "DiART reagent 114"^^xsd:string ; rdfs:subClassOf obo:MS_1002771 . obo:MS_1002773 obo:IAO_0000115 "The name of the sample labelled with the DiART reagent 115."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002773"^^xsd:string ; a owl:Class ; rdfs:label "DiART reagent 115"^^xsd:string ; rdfs:subClassOf obo:MS_1002771 . obo:MS_1002774 obo:IAO_0000115 "The name of the sample labelled with the DiART reagent 116."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002774"^^xsd:string ; a owl:Class ; rdfs:label "DiART reagent 116"^^xsd:string ; rdfs:subClassOf obo:MS_1002771 . obo:MS_1002775 obo:IAO_0000115 "The name of the sample labelled with the DiART reagent 117."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002775"^^xsd:string ; a owl:Class ; rdfs:label "DiART reagent 117"^^xsd:string ; rdfs:subClassOf obo:MS_1002771 . obo:MS_1002776 obo:IAO_0000115 "The name of the sample labelled with the DiART reagent 118."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002776"^^xsd:string ; a owl:Class ; rdfs:label "DiART reagent 118"^^xsd:string ; rdfs:subClassOf obo:MS_1002771 . obo:MS_1002777 obo:IAO_0000115 "The name of the sample labelled with the DiART reagent 119."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002777"^^xsd:string ; a owl:Class ; rdfs:label "DiART reagent 119"^^xsd:string ; rdfs:subClassOf obo:MS_1002771 . obo:MS_1002778 obo:IAO_0000115 "Dimethyl leucine labeling reagent."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002778"^^xsd:string ; a owl:Class ; rdfs:label "DiLeu reagent"^^xsd:string ; rdfs:subClassOf obo:MS_1002602 . obo:MS_1002779 obo:IAO_0000115 "The name of the sample labelled with the DiLeu reagent 115."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002779"^^xsd:string ; a owl:Class ; rdfs:label "DiLeu reagent 115"^^xsd:string ; rdfs:subClassOf obo:MS_1002778 . obo:MS_1002780 obo:IAO_0000115 "The name of the sample labelled with the DiLeu reagent 116."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002780"^^xsd:string ; a owl:Class ; rdfs:label "DiLeu reagent 116"^^xsd:string ; rdfs:subClassOf obo:MS_1002778 . obo:MS_1002781 obo:IAO_0000115 "The name of the sample labelled with the DiLeu reagent 117."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002781"^^xsd:string ; a owl:Class ; rdfs:label "DiLeu reagent 117"^^xsd:string ; rdfs:subClassOf obo:MS_1002778 . obo:MS_1002782 obo:IAO_0000115 "The name of the sample labelled with the DiLeu reagent 118."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002782"^^xsd:string ; a owl:Class ; rdfs:label "DiLeu reagent 118"^^xsd:string ; rdfs:subClassOf obo:MS_1002778 . obo:MS_1002783 obo:IAO_0000115 "The 6550 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002783"^^xsd:string ; a owl:Class ; rdfs:label "6550 iFunnel Q-TOF LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002784 obo:IAO_0000115 "The 6550A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002784"^^xsd:string ; a owl:Class ; rdfs:label "6550A iFunnel Q-TOF LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002785 obo:IAO_0000115 "The 6520B Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002785"^^xsd:string ; a owl:Class ; rdfs:label "6520B Q-TOF LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002786 obo:IAO_0000115 "The 6530A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002786"^^xsd:string ; a owl:Class ; rdfs:label "6530A Q-TOF LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002787 obo:IAO_0000115 "The 6530B Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002787"^^xsd:string ; a owl:Class ; rdfs:label "6530B Q-TOF LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002788 obo:IAO_0000115 "The 6538 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002788"^^xsd:string ; a owl:Class ; rdfs:label "6538 Q-TOF LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002789 obo:IAO_0000115 "The 6540 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002789"^^xsd:string ; a owl:Class ; rdfs:label "6540 Q-TOF LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002790 obo:IAO_0000115 "The 6542 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002790"^^xsd:string ; a owl:Class ; rdfs:label "6542 Q-TOF LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002791 obo:IAO_0000115 "The 6545 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002791"^^xsd:string ; a owl:Class ; rdfs:label "6545 Q-TOF LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002792 obo:IAO_0000115 "The 6560 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002792"^^xsd:string ; a owl:Class ; rdfs:label "6560 Q-TOF LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002793 obo:IAO_0000115 "The 6570 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002793"^^xsd:string ; a owl:Class ; rdfs:label "6570 Q-TOF LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002794 obo:IAO_0000115 "The 6120B Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002794"^^xsd:string ; a owl:Class ; rdfs:label "6120B Quadrupole LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002795 obo:IAO_0000115 "The 6150 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002795"^^xsd:string ; a owl:Class ; rdfs:label "6150 Quadrupole LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002796 obo:IAO_0000115 "The 6224 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002796"^^xsd:string ; a owl:Class ; rdfs:label "6224 Time-of-Flight LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002797 obo:IAO_0000115 "The 6230A Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002797"^^xsd:string ; a owl:Class ; rdfs:label "6230A Time-of-Flight LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002798 obo:IAO_0000115 "The 6230B Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002798"^^xsd:string ; a owl:Class ; rdfs:label "6230B Time-of-Flight LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002799 obo:IAO_0000115 "The 6430 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002799"^^xsd:string ; a owl:Class ; rdfs:label "6430 Triple Quadrupole LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002800 obo:IAO_0000115 "The 6495A Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002800"^^xsd:string ; a owl:Class ; rdfs:label "6495A Triple Quadrupole LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002801 obo:IAO_0000115 "The 6495B Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002801"^^xsd:string ; a owl:Class ; rdfs:label "6495B Triple Quadrupole LC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002802 obo:IAO_0000115 "The 7000A Quadrupole GC/MS system is a Agilent gas chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002802"^^xsd:string ; a owl:Class ; rdfs:label "7000A Triple Quadrupole GC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002803 obo:IAO_0000115 "The 7000B Quadrupole GC/MS system is a Agilent gas chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002803"^^xsd:string ; a owl:Class ; rdfs:label "7000B Triple Quadrupole GC/MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002804 obo:IAO_0000115 "The 7800 Quadrupole ICP-MS system is a Agilent inductively couple plasma instrument combined with a Agilent quadrupole mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002804"^^xsd:string ; a owl:Class ; rdfs:label "7800 Quadrupole ICP-MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002805 obo:IAO_0000115 "The 8800 Quadrupole ICP-MS system is a Agilent inductively couple plasma instrument combined with a Agilent quadrupole mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002805"^^xsd:string ; a owl:Class ; rdfs:label "8800 Triple Quadrupole ICP-MS"^^xsd:string ; rdfs:subClassOf obo:MS_1000490 . obo:MS_1002806 obo:IAO_0000115 "Molecular entity having a net positive or negative electric charge."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002806"^^xsd:string ; a owl:Class ; rdfs:label "ion"^^xsd:string ; rdfs:subClassOf obo:MS_1000881 . obo:MS_1002807 obo:IAO_0000115 "Adduct ion with positive ionization."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002807"^^xsd:string ; a owl:Class ; rdfs:label "positive mode adduct ion"^^xsd:string ; rdfs:subClassOf obo:MS_1000353 . obo:MS_1002808 obo:IAO_0000115 "Adduct ion with negative ionization."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002808"^^xsd:string ; a owl:Class ; rdfs:label "negative mode adduct ion"^^xsd:string ; rdfs:subClassOf obo:MS_1000353 . obo:MS_1002809 obo:IAO_0000115 "Nonphysical characteristic attributed to an adduct ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002809"^^xsd:string ; a owl:Class ; rdfs:label "adduct ion attribute"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000353 ] . obo:MS_1002810 obo:IAO_0000115 "Theoretical m/z of the X component in the adduct (addition product) M+X or M-X. This term was formerly called 'adduct ion mass', but it is not really a mass. It corresponds to the column mislabelled as 'mass' at https://fiehnlab.ucdavis.edu/staff/kind/Metabolomics/MS-Adduct-Calculator."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002810"^^xsd:string ; a owl:Class ; rdfs:label "adduct ion X m/z"^^xsd:string ; rdfs:subClassOf obo:MS_1003056, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002811 obo:IAO_0000115 "Isotope of the matrix molecule M of an adduct formation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002811"^^xsd:string ; a owl:Class ; rdfs:label "adduct ion isotope"^^xsd:string ; rdfs:subClassOf obo:MS_1003056, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002812 obo:IAO_0000115 "([[:digit:]{0,1}M([+][:digit:]{0,1}(H|K|(Na)|(Li)|(Cl)|(Br)|(NH3)|(NH4)|(CH3OH)|(IsoProp)|(DMSO)|(FA)|(Hac)|(TFA)|(NaCOOH)|(HCOOH)|(CF3COOH)|(ACN))){0,}([-][:digit:]{0,1}(H|(H2O)|(CH2)|(CH4)|(NH3)|(CO)|(CO2)|(COCH2)|(HCOOH)|(C2H4)|(C4H8)|(C3H2O3)|(C5H8O4)|(C6H10O4)|(C6H10O5)|(C6H8O6))){0,}][:digit:]{0,1}[+-])."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002812"^^xsd:string ; a owl:Class ; rdfs:label "Regular expression for adduct ion formula"^^xsd:string ; rdfs:subClassOf obo:MS_1002479 . obo:MS_1002813 obo:IAO_0000115 "Adduct formation formula of the form M+X or M-X, as constrained by the provided regular expression."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002813"^^xsd:string ; a owl:Class ; rdfs:label "adduct ion formula"^^xsd:string ; rdfs:subClassOf obo:MS_1002809, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002812 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002814 obo:IAO_0000115 "An electrical mobility unit that equals the speed [cm/s] an ion reaches when pulled through a gas by a Voltage[V] over a certain distance [cm]."^^xsd:string ; oboInOwl:hasExactSynonym "Vs/cm^2"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002814"^^xsd:string ; a owl:Class ; rdfs:label "volt-second per square centimeter"^^xsd:string ; rdfs:subClassOf obo:UO_0000000 . obo:MS_1002815 obo:IAO_0000115 "Ion mobility measurement for an ion or spectrum of ions as measured in an ion mobility mass spectrometer. This might refer to the central value of a bin into which all ions within a narrow range of mobilities have been aggregated."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002815"^^xsd:string ; a owl:Class ; rdfs:label "inverse reduced ion mobility"^^xsd:string ; rdfs:subClassOf obo:MS_1000455, obo:MS_1002892, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002814 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002816 obo:IAO_0000115 "Array of population mean ion mobility values (K or K0) based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, corresponding to a spectrum of individual peaks encoded with an m/z array."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002816"^^xsd:string ; a owl:Class ; rdfs:label "mean ion mobility array"^^xsd:string ; rdfs:subClassOf obo:MS_1002893, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000028 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002817 obo:IAO_0000115 "Bruker TDF raw file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002817"^^xsd:string ; a owl:Class ; rdfs:label "Bruker TDF format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1002818 obo:IAO_0000115 "Native format defined by frame=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002818"^^xsd:string ; a owl:Class ; rdfs:label "Bruker TDF nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767 . obo:MS_1002819 obo:IAO_0000115 "Bruker TDF comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002819"^^xsd:string ; a owl:Class ; rdfs:label "Bruker TDF nativeID format, combined spectra"^^xsd:string ; rdfs:subClassOf obo:MS_1002646, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002820 obo:IAO_0000115 "Adduct formed by protonation of a matrix molecule M, i.e. the addition of a matrix molecule M plus a proton."^^xsd:string ; obo:ionMass_ "M + 1.007276"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002820"^^xsd:string ; a owl:Class ; rdfs:label "M+H ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002807 . obo:MS_1002821 obo:IAO_0000115 "Adduct formed by deprotonation of a matrix molecule M, i.e. the removal of a proton from a matrix molecule M."^^xsd:string ; obo:ionMass_ "M - 1.007276"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002821"^^xsd:string ; a owl:Class ; rdfs:label "M-H ion"^^xsd:string ; rdfs:subClassOf obo:MS_1002808 . obo:MS_1002822 obo:IAO_0000115 "File format developed by the OpenMS team."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002822"^^xsd:string ; a owl:Class ; rdfs:label "OpenMS file format"^^xsd:string ; rdfs:subClassOf obo:MS_1001459 . obo:MS_1002823 obo:IAO_0000115 "OpenMS intermediate identification format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002823"^^xsd:string ; a owl:Class ; rdfs:label "idXML"^^xsd:string ; rdfs:subClassOf obo:MS_1002822 . obo:MS_1002824 obo:IAO_0000115 "OpenMS feature file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002824"^^xsd:string ; a owl:Class ; rdfs:label "featureXML"^^xsd:string ; rdfs:subClassOf obo:MS_1002822 . obo:MS_1002825 obo:IAO_0000115 "OpenMS consensus map format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002825"^^xsd:string ; a owl:Class ; rdfs:label "consensusXML"^^xsd:string ; rdfs:subClassOf obo:MS_1002822 . obo:MS_1002826 obo:IAO_0000115 "MetaMorpheus search engine."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002826"^^xsd:string ; a owl:Class ; rdfs:label "MetaMorpheus"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002827 obo:IAO_0000115 "MetaMorpheus score for PSMs."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002827"^^xsd:string ; a owl:Class ; rdfs:label "MetaMorpheus:score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002828 obo:IAO_0000115 "MetaMorpheus score for protein groups."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002828"^^xsd:string ; a owl:Class ; rdfs:label "MetaMorpheus:protein score"^^xsd:string ; rdfs:subClassOf obo:MS_1002368, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002829 obo:IAO_0000115 "Feature intensity produced by XCMS findPeaks() from integrated peak intensity."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002829"^^xsd:string ; a owl:Class ; rdfs:label "XCMS:into"^^xsd:string ; rdfs:subClassOf obo:MS_1002735, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002830 obo:IAO_0000115 "Feature intensity produced by XCMS findPeaks() from baseline corrected integrated peak intensity."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002830"^^xsd:string ; a owl:Class ; rdfs:label "XCMS:intf"^^xsd:string ; rdfs:subClassOf obo:MS_1002735, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002831 obo:IAO_0000115 "Feature intensity produced by XCMS findPeaks() from maximum peak intensity."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002831"^^xsd:string ; a owl:Class ; rdfs:label "XCMS:maxo"^^xsd:string ; rdfs:subClassOf obo:MS_1002735, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002832 obo:IAO_0000115 "Feature intensity produced by XCMS findPeaks() from feature area that is not normalized by the scan rate."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002832"^^xsd:string ; a owl:Class ; rdfs:label "XCMS:area"^^xsd:string ; rdfs:subClassOf obo:MS_1002735, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002833 obo:IAO_0000115 "Polarities of the scans of a run are alternating, i.e. both positive and negative mode scans are acquired."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002833"^^xsd:string ; a owl:Class ; rdfs:label "alternating polarity mode"^^xsd:string ; rdfs:subClassOf obo:MS_1000857 . obo:MS_1002834 obo:IAO_0000115 "The Delta Score reported by Proteome Discoverer version 2."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002834"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeDiscoverer:Delta Score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002835 obo:IAO_0000115 "Thermo Fisher Scientific LTQ Orbitrap Classic."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002835"^^xsd:string ; a owl:Class ; rdfs:label "LTQ Orbitrap Classic"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1002836 obo:IAO_0000115 "Dataset identifier issued by the iProX repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002836"^^xsd:string ; a owl:Class ; rdfs:label "iProX dataset identifier"^^xsd:string ; rdfs:subClassOf obo:MS_1000878, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002837 obo:IAO_0000115 "URI that allows the access to one dataset in the iProX repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002837"^^xsd:string ; a owl:Class ; rdfs:label "iProX dataset URI"^^xsd:string ; rdfs:subClassOf obo:MS_1000878, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_anyURI ] . obo:MS_1002838 obo:IAO_0000115 "mzMLb file format, mzML encapsulated within HDF5."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002838"^^xsd:string ; a owl:Class ; rdfs:label "mzMLb format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1002839 obo:IAO_0000115 "Conversion of a file format to Proteomics Standards Initiative mzMLb file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002839"^^xsd:string ; a owl:Class ; rdfs:label "Conversion to mzMLb"^^xsd:string ; rdfs:subClassOf obo:MS_1000530 . obo:MS_1002840 obo:IAO_0000115 "Data belonging to an external reference."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002840"^^xsd:string ; a owl:Class ; rdfs:label "external reference data"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_0000000 ] . obo:MS_1002841 obo:IAO_0000115 "The HDF5 dataset location containing the binary data, relative to the dataset containing the mzML. Also indicates that there is no data in the section of the BinaryDataArray."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002841"^^xsd:string ; a owl:Class ; rdfs:label "external HDF5 dataset"^^xsd:string ; rdfs:subClassOf obo:MS_1002840, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002842 obo:IAO_0000115 "The position in the external data where the array begins."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002842"^^xsd:string ; a owl:Class ; rdfs:label "external offset"^^xsd:string ; rdfs:subClassOf obo:MS_1002840, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000189 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_nonNegativeInteger ] . obo:MS_1002843 obo:IAO_0000115 "Describes how many fields an array contains."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002843"^^xsd:string ; a owl:Class ; rdfs:label "external array length"^^xsd:string ; rdfs:subClassOf obo:MS_1002840, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000189 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_nonNegativeInteger ] . obo:MS_1002844 obo:IAO_0000115 "Root node for terms relating to the description of an Experiment in relation to the PRIDE-XML element ExperimentCollection/Experiment/additional/cvParam."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002844"^^xsd:string ; a owl:Class ; rdfs:label "Experiment additional parameter"^^xsd:string ; rdfs:subClassOf obo:MS_1001458 . obo:MS_1002845 obo:IAO_0000115 "URI of one external file associated to the PRIDE experiment (maybe through a PX submission)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002845"^^xsd:string ; a owl:Class ; rdfs:label "Associated file URI"^^xsd:string ; rdfs:subClassOf obo:MS_1002844, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002846 obo:IAO_0000115 "URI of one raw data file associated to the PRIDE experiment (maybe through a PX submission)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002846"^^xsd:string ; a owl:Class ; rdfs:label "Associated raw file URI"^^xsd:string ; rdfs:subClassOf obo:MS_1002845, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002847 obo:IAO_0000115 "URI associated to one PX submission in ProteomeCentral."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002847"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeCentral dataset URI"^^xsd:string ; rdfs:subClassOf obo:MS_1002844, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002848 obo:IAO_0000115 "URI of one file labeled as 'Result', associated to one PX submission."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002848"^^xsd:string ; a owl:Class ; rdfs:label "Result file URI"^^xsd:string ; rdfs:subClassOf obo:MS_1002845, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002849 obo:IAO_0000115 "URI of one search engine output file associated to one PX submission."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002849"^^xsd:string ; a owl:Class ; rdfs:label "Search engine output file URI"^^xsd:string ; rdfs:subClassOf obo:MS_1002845, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002850 obo:IAO_0000115 "URI of one of one search engine output file associated to one PX submission."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002850"^^xsd:string ; a owl:Class ; rdfs:label "Peak list file URI"^^xsd:string ; rdfs:subClassOf obo:MS_1002845, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002851 obo:IAO_0000115 "URI of one file labeled as 'Other', associated to one PX submission."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002851"^^xsd:string ; a owl:Class ; rdfs:label "Other type file URI"^^xsd:string ; rdfs:subClassOf obo:MS_1002845, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002852 obo:IAO_0000115 "FTP location of one entire PX data set."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002852"^^xsd:string ; a owl:Class ; rdfs:label "Dataset FTP location"^^xsd:string ; rdfs:subClassOf obo:MS_1002844, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002853 obo:IAO_0000115 "A dataset which does not have an associated published manuscript."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002853"^^xsd:string ; a owl:Class ; rdfs:label "Dataset with no associated published manuscript"^^xsd:string ; rdfs:subClassOf obo:MS_1002844 . obo:MS_1002854 obo:IAO_0000115 "Dataset has been peer-reviewed somehow."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002854"^^xsd:string ; a owl:Class ; rdfs:label "Peer-reviewed dataset"^^xsd:string ; rdfs:subClassOf obo:MS_1002844 . obo:MS_1002855 obo:IAO_0000115 "Dataset that has not been peer-reviewed by any means."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002855"^^xsd:string ; a owl:Class ; rdfs:label "Non peer-reviewed dataset"^^xsd:string ; rdfs:subClassOf obo:MS_1002844 . obo:MS_1002856 obo:IAO_0000115 "Dataset for which the identifications and/or spectra/traces are in formats that can be parsed by the hosting data repository such that internal references between identifications and spectra/traces are preserved and browsable at the repository. This is usually called a complete submission."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002856"^^xsd:string ; a owl:Class ; rdfs:label "Supported dataset by repository"^^xsd:string ; rdfs:subClassOf obo:MS_1002844 . obo:MS_1002857 obo:IAO_0000115 "Dataset for which the identifications and/or spectra/traces are in formats that cannot be parsed by the hosting data repository and thus internal references between identifications and spectra/traces are not browsable at the repository. This is usually called a partial submission."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002857"^^xsd:string ; a owl:Class ; rdfs:label "Unsupported dataset by repository"^^xsd:string ; rdfs:subClassOf obo:MS_1002844 . obo:MS_1002858 obo:IAO_0000115 "A dataset which has an associated manuscript pending for publication."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002858"^^xsd:string ; a owl:Class ; rdfs:label "Dataset with its publication pending"^^xsd:string ; rdfs:subClassOf obo:MS_1002844 . obo:MS_1002859 obo:IAO_0000115 "Additional URI of one raw data file associated to the PRIDE experiment (maybe through a PX submission). The URI is provided via an additional resource to PRIDE."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002859"^^xsd:string ; a owl:Class ; rdfs:label "Additional associated raw file URI"^^xsd:string ; rdfs:subClassOf obo:MS_1002845, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002860 obo:IAO_0000115 "URI of one gel image file associated to one PX submission."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002860"^^xsd:string ; a owl:Class ; rdfs:label "Gel image file URI"^^xsd:string ; rdfs:subClassOf obo:MS_1002845, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002861 obo:IAO_0000115 "All the raw files included in the original dataset (or group of original datasets) have been reanalysed."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002861"^^xsd:string ; a owl:Class ; rdfs:label "Reprocessed complete dataset"^^xsd:string ; rdfs:subClassOf obo:MS_1002844, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002862 obo:IAO_0000115 "A subset of the raw files included in the original dataset (or group of original datasets) has been reanalysed."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002862"^^xsd:string ; a owl:Class ; rdfs:label "Reprocessed subset dataset"^^xsd:string ; rdfs:subClassOf obo:MS_1002844, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002863 obo:IAO_0000115 "One dataset is a reanalysis of previously published data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002863"^^xsd:string ; a owl:Class ; rdfs:label "Data derived from previous dataset"^^xsd:string ; rdfs:subClassOf obo:MS_1002844 . obo:MS_1002864 obo:IAO_0000115 "No post-translational-modifications are been included in the identified peptides of one dataset."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002864"^^xsd:string ; a owl:Class ; rdfs:label "No PTMs are included in the dataset"^^xsd:string ; rdfs:subClassOf obo:MS_1002844 . obo:MS_1002865 obo:IAO_0000115 "A dataset has one associated manuscript, which has been accepted but no PubMedID is available yet."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002865"^^xsd:string ; a owl:Class ; rdfs:label "Accepted manuscript"^^xsd:string ; rdfs:subClassOf obo:MS_1002844 . obo:MS_1002866 obo:IAO_0000115 "Literature reference associated with one dataset (including the authors, title, year and journal details). The value field can be used for the PubMedID, or to specify if one manuscript is just submitted or accepted, but it does not have a PubMedID yet."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002866"^^xsd:string ; a owl:Class ; rdfs:label "Reference"^^xsd:string ; rdfs:subClassOf obo:MS_1002844, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002867 obo:IAO_0000115 "This means that the experimental information available has been improved, for instance precursor charges were added."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002867"^^xsd:string ; a owl:Class ; rdfs:label "Experimental information has been refined since this experiment was originally made publicly available"^^xsd:string ; rdfs:subClassOf obo:MS_1002844 . obo:MS_1002868 obo:IAO_0000115 "One dataset is not a reanalysis of previously published data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002868"^^xsd:string ; a owl:Class ; rdfs:label "Original data"^^xsd:string ; rdfs:subClassOf obo:MS_1002844 . obo:MS_1002869 obo:IAO_0000115 "Bioconductor package mzR for reading and writing mass spectrometry data files."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002869"^^xsd:string ; a owl:Class ; rdfs:label "mzR"^^xsd:string ; rdfs:subClassOf obo:MS_1001456, obo:MS_1001457 . obo:MS_1002870 obo:IAO_0000115 "Bioconductor package MSnbase provides infrastructure for manipulation, processing and visualization of mass spectrometry and proteomics data, ranging from raw to quantitative and annotated data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002870"^^xsd:string ; a owl:Class ; rdfs:label "MSnbase"^^xsd:string ; rdfs:subClassOf obo:MS_1001456, obo:MS_1001457 . obo:MS_1002871 obo:IAO_0000115 "Bioconductor package CAMERA for annotation of peak lists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002871"^^xsd:string ; a owl:Class ; rdfs:label "CAMERA"^^xsd:string ; rdfs:subClassOf obo:MS_1001456, obo:MS_1001457 . obo:MS_1002872 obo:IAO_0000115 "Dataset identifier issued by the Panorama Public repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002872"^^xsd:string ; a owl:Class ; rdfs:label "Panorama Public dataset identifier"^^xsd:string ; rdfs:subClassOf obo:MS_1000878, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002873 obo:IAO_0000115 "URI that allows the access to one dataset in the Panorama Public repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002873"^^xsd:string ; a owl:Class ; rdfs:label "Panorama Public dataset URI"^^xsd:string ; rdfs:subClassOf obo:MS_1000878, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_anyURI ] . obo:MS_1002874 obo:IAO_0000115 "Thermo Scientific TSQ Altis Triple Quadrupole MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002874"^^xsd:string ; a owl:Class ; rdfs:label "TSQ Altis"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1002875 obo:IAO_0000115 "Thermo Scientific TSQ Quantis Triple Quadrupole MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002875"^^xsd:string ; a owl:Class ; rdfs:label "TSQ Quantis"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1002876 obo:IAO_0000115 "Thermo Scientific TSQ 9000 Triple Quadrupole MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002876"^^xsd:string ; a owl:Class ; rdfs:label "TSQ 9000"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1002877 obo:IAO_0000115 "Thermo Scientific Q Exactive HF-X Hybrid Quadrupole Orbitrap MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002877"^^xsd:string ; a owl:Class ; rdfs:label "Q Exactive HF-X"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1002878 obo:IAO_0000115 "Software for the analysis of small molecules."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002878"^^xsd:string ; a owl:Class ; rdfs:label "small molecule analysis software"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002879 obo:IAO_0000115 "Metabolomics analysis software for LC-MS data from Nonlinear Dynamics."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002879"^^xsd:string ; a owl:Class ; rdfs:label "Progenesis QI"^^xsd:string ; rdfs:subClassOf obo:MS_1002878 . obo:MS_1002880 obo:IAO_0000115 "Metabolomics analysis software from Thermo Fisher Scientific."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002880"^^xsd:string ; a owl:Class ; rdfs:label "Compound Discoverer"^^xsd:string ; rdfs:subClassOf obo:MS_1002878 . obo:MS_1002881 obo:IAO_0000115 "Metabolite identification tool MyCompoundID."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002881"^^xsd:string ; a owl:Class ; rdfs:label "MyCompoundID"^^xsd:string ; rdfs:subClassOf obo:MS_1002878 . obo:MS_1002882 obo:IAO_0000115 "Function used to calculate the study variable quantification value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002882"^^xsd:string ; a owl:Class ; rdfs:label "study variable average function"^^xsd:string ; rdfs:subClassOf obo:MS_1001184 . obo:MS_1002883 obo:IAO_0000115 "Median function."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002883"^^xsd:string ; a owl:Class ; rdfs:label "median"^^xsd:string ; rdfs:subClassOf obo:MS_1002882 . obo:MS_1002884 obo:IAO_0000115 "Function used to calculate the study variable quantification variation value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002884"^^xsd:string ; a owl:Class ; rdfs:label "study variable variation function"^^xsd:string ; rdfs:subClassOf obo:MS_1001184 . obo:MS_1002885 obo:IAO_0000115 "Standard error function."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002885"^^xsd:string ; a owl:Class ; rdfs:label "standard error"^^xsd:string ; rdfs:subClassOf obo:MS_1002884 . obo:MS_1002886 obo:IAO_0000115 "The value reported in a small molecule quantification."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002886"^^xsd:string ; a owl:Class ; rdfs:label "small molecule quantification datatype"^^xsd:string ; rdfs:subClassOf obo:MS_1001805 . obo:MS_1002887 obo:IAO_0000115 "The normalised abundance produced by Progenesis QI LC-MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002887"^^xsd:string ; a owl:Class ; rdfs:label "Progenesis QI normalised abundance"^^xsd:string ; rdfs:subClassOf obo:MS_1002886, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002888 obo:IAO_0000115 "The confidence score produced by a small molecule analysis software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002888"^^xsd:string ; a owl:Class ; rdfs:label "small molecule confidence measure"^^xsd:string ; rdfs:subClassOf obo:MS_1002694 . obo:MS_1002889 obo:IAO_0000115 "The confidence score produced by Progenesis QI."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002889"^^xsd:string ; a owl:Class ; rdfs:label "Progenesis MetaScope score"^^xsd:string ; rdfs:subClassOf obo:MS_1002888, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002890 obo:IAO_0000115 "The fragmentation confidence score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002890"^^xsd:string ; a owl:Class ; rdfs:label "fragmentation score"^^xsd:string ; rdfs:subClassOf obo:MS_1002888, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002891 obo:IAO_0000115 "The isotopic fit confidence score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002891"^^xsd:string ; a owl:Class ; rdfs:label "isotopic fit score"^^xsd:string ; rdfs:subClassOf obo:MS_1002888, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1002892 obo:IAO_0000115 "An attribute describing ion mobility searches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002892"^^xsd:string ; a owl:Class ; rdfs:label "ion mobility attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1000503, obo:MS_1002345 . obo:MS_1002893 obo:IAO_0000115 "Abstract array of ion mobility data values. A more specific child term concept should be specified in data files to make precise the nature of the data being provided."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002893"^^xsd:string ; a owl:Class ; rdfs:label "ion mobility array"^^xsd:string ; rdfs:subClassOf obo:MS_1000513 . obo:MS_1002894 obo:IAO_0000115 "Unique chemical structure identifier for chemical compounds."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002894"^^xsd:string ; a owl:Class ; rdfs:label "InChIKey"^^xsd:string ; rdfs:subClassOf obo:MS_1001405, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002895 obo:IAO_0000115 "Compound identification information."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002895"^^xsd:string ; a owl:Class ; rdfs:label "small molecule identification attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1002694 . obo:MS_1002896 obo:IAO_0000115 "Confidence level for annotation of identified compounds as defined by the Metabolomics Standards Initiative (MSI). The value slot can have the values 'Level 0' until 'Level 4'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002896"^^xsd:string ; a owl:Class ; rdfs:label "compound identification confidence level"^^xsd:string ; rdfs:subClassOf obo:MS_1002895, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002897 obo:IAO_0000115 "OBSOLETE Identifies a peak when no de-isotoping has been performed. The value slot reports the isotopomer peak, e.g. '2H', '13C', '15N', '18O', '31P'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002897"^^xsd:string ; a owl:Class ; rdfs:comment "This term was obsoleted because it was replaced by the more exact terms MS:1002956 'isotopic ion MS peak', MS:1002957 'isotopomer MS peak' and MS:1002958 'isotopologue MS peak' instead."^^xsd:string ; rdfs:label "isotopomer peak"^^xsd:string ; rdfs:subClassOf obo:MS_1000231, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:MS_1002898 obo:IAO_0000115 "Native format defined by scan=xsd:nonNegativeInteger."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002898"^^xsd:string ; a owl:Class ; rdfs:label "Shimadzu Biotech QTOF nativeID format"^^xsd:string ; rdfs:subClassOf obo:MS_1000767 . obo:MS_1002899 obo:IAO_0000115 "msalign file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002899"^^xsd:string ; a owl:Class ; rdfs:label "msalign format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1002900 obo:IAO_0000115 "TopFD feature file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002900"^^xsd:string ; a owl:Class ; rdfs:label "feature format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1002901 obo:IAO_0000115 "TopPIC: a software tool for top-down mass spectrometry-based proteoform identification and characterization."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002901"^^xsd:string ; a owl:Class ; rdfs:label "TopPIC"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002902 obo:IAO_0000115 "Top-down mass spectral feature detection."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002902"^^xsd:string ; a owl:Class ; rdfs:label "TopFD"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002903 obo:IAO_0000115 "A mass graph-based approach for the identification of modified proteoforms using top-down tandem mass spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002903"^^xsd:string ; a owl:Class ; rdfs:label "TopMG"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002904 obo:IAO_0000115 "Proteoform level information."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002904"^^xsd:string ; a owl:Class ; rdfs:label "proteoform-level identification attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1002694 . obo:MS_1002905 obo:IAO_0000115 "Identification confidence metric for a proteoform."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002905"^^xsd:string ; a owl:Class ; rdfs:label "proteoform-level identification statistic"^^xsd:string ; rdfs:subClassOf obo:MS_1002904 . obo:MS_1002906 obo:IAO_0000115 "Search engine specific proteoform scores."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002906"^^xsd:string ; a owl:Class ; rdfs:label "search engine specific score for proteoforms"^^xsd:string ; rdfs:subClassOf obo:MS_1002905 . obo:MS_1002907 obo:IAO_0000115 "Estimation of the global false discovery rate of proteoforms."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002907"^^xsd:string ; a owl:Class ; rdfs:label "proteoform-level global FDR"^^xsd:string ; rdfs:subClassOf obo:MS_1002905, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002908 obo:IAO_0000115 "Estimation of the local false discovery rate of proteoforms."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002908"^^xsd:string ; a owl:Class ; rdfs:label "proteoform-level local FDR"^^xsd:string ; rdfs:subClassOf obo:MS_1002905, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002909 obo:IAO_0000115 "Estimated statistical threshold at proteoform-level."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002909"^^xsd:string ; a owl:Class ; rdfs:label "proteoform-level statistical threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002573 . obo:MS_1002910 obo:IAO_0000115 "Threshold for the global false discovery rate of proteoforms."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002910"^^xsd:string ; a owl:Class ; rdfs:label "proteoform-level global FDR threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002909, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002911 obo:IAO_0000115 "Threshold for the local false discovery rate of proteoforms."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002911"^^xsd:string ; a owl:Class ; rdfs:label "proteoform-level local FDR threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002909, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002912 obo:IAO_0000115 "Search engine input parameters specific to TopPIC."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002912"^^xsd:string ; a owl:Class ; rdfs:label "TopPIC input parameter"^^xsd:string ; rdfs:subClassOf obo:MS_1001302 . obo:MS_1002913 obo:IAO_0000115 "Fixed modifications for TopPIC searching."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002913"^^xsd:string ; a owl:Class ; rdfs:label "TopPIC:fixed modification"^^xsd:string ; rdfs:subClassOf obo:MS_1002912 . obo:MS_1002914 obo:IAO_0000115 "N-terminal forms of proteins allowed in TopPIC searching."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002914"^^xsd:string ; a owl:Class ; rdfs:label "TopPIC:N-term form"^^xsd:string ; rdfs:subClassOf obo:MS_1002912 . obo:MS_1002915 obo:IAO_0000115 "Error tolerance for precursor and fragment masses in PPM."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002915"^^xsd:string ; a owl:Class ; rdfs:label "TopPIC:error tolerance"^^xsd:string ; rdfs:subClassOf obo:MS_1002912, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1002916 obo:IAO_0000115 "Maximum value of the mass shift (in Dalton) of an unexpected modification."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002916"^^xsd:string ; a owl:Class ; rdfs:label "TopPIC:max shift"^^xsd:string ; rdfs:subClassOf obo:MS_1002912, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1002917 obo:IAO_0000115 "Minimum value of the mass shift (in Dalton) of an unexpected modification."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002917"^^xsd:string ; a owl:Class ; rdfs:label "TopPIC:min shift"^^xsd:string ; rdfs:subClassOf obo:MS_1002912, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1002918 obo:IAO_0000115 "Maximum number of unexpected modifications in a proteoform spectrum match."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002918"^^xsd:string ; a owl:Class ; rdfs:label "TopPIC:shift num"^^xsd:string ; rdfs:subClassOf obo:MS_1002912, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1002919 obo:IAO_0000115 "Spectrum-level cutoff type for filtering identified proteoform spectrum matches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002919"^^xsd:string ; a owl:Class ; rdfs:label "TopPIC:spectral cutoff type"^^xsd:string ; rdfs:subClassOf obo:MS_1002912, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002920 obo:IAO_0000115 "Spectrum-level cutoff value for filtering identified proteoform spectrum matches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002920"^^xsd:string ; a owl:Class ; rdfs:label "TopPIC:spectral cutoff value"^^xsd:string ; rdfs:subClassOf obo:MS_1002912, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002921 obo:IAO_0000115 "Proteoform-level cutoff type for filtering identified proteoform spectrum matches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002921"^^xsd:string ; a owl:Class ; rdfs:label "TopPIC:proteoform-level cutoff type"^^xsd:string ; rdfs:subClassOf obo:MS_1002912, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002922 obo:IAO_0000115 "Proteoform-level cutoff value for filtering identified proteoform spectrum matches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002922"^^xsd:string ; a owl:Class ; rdfs:label "TopPIC:proteoform-level cutoff value"^^xsd:string ; rdfs:subClassOf obo:MS_1002912, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002923 obo:IAO_0000115 "P-value and E-value estimation using generating function."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002923"^^xsd:string ; a owl:Class ; rdfs:label "TopPIC:generating function"^^xsd:string ; rdfs:subClassOf obo:MS_1002912, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002924 obo:IAO_0000115 "Number of combined spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002924"^^xsd:string ; a owl:Class ; rdfs:label "TopPIC:combined spectrum number"^^xsd:string ; rdfs:subClassOf obo:MS_1002912, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1002925 obo:IAO_0000115 "The text file containing the information of common PTMs."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002925"^^xsd:string ; a owl:Class ; rdfs:label "TopPIC:mod file"^^xsd:string ; rdfs:subClassOf obo:MS_1002912 . obo:MS_1002926 obo:IAO_0000115 "Number of threads used in TopPIC."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002926"^^xsd:string ; a owl:Class ; rdfs:label "TopPIC:thread number"^^xsd:string ; rdfs:subClassOf obo:MS_1002912, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1002927 obo:IAO_0000115 "Proteoform identification using TopFD feature file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002927"^^xsd:string ; a owl:Class ; rdfs:label "TopPIC:use TopFD feature"^^xsd:string ; rdfs:subClassOf obo:MS_1002912, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002928 obo:IAO_0000115 "TopPIC spectrum-level E-value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002928"^^xsd:string ; a owl:Class ; rdfs:label "TopPIC:spectral E-value"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1002353, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002109 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002929 obo:IAO_0000115 "TopPIC spectrum-level FDR."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002929"^^xsd:string ; a owl:Class ; rdfs:label "TopPIC:spectral FDR"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1002351, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002930 obo:IAO_0000115 "TopPIC proteoform-level FDR."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002930"^^xsd:string ; a owl:Class ; rdfs:label "TopPIC:proteoform-level FDR"^^xsd:string ; rdfs:subClassOf obo:MS_1002906, obo:MS_1002908, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002931 obo:IAO_0000115 "TopPIC spectrum-level p-value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002931"^^xsd:string ; a owl:Class ; rdfs:label "TopPIC:spectral p-value"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1002352, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002932 obo:IAO_0000115 "Modification identification score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002932"^^xsd:string ; a owl:Class ; rdfs:label "TopPIC:MIScore"^^xsd:string ; rdfs:subClassOf obo:MS_1001968, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002933 obo:IAO_0000115 "TopPIC:MIScore threshold."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002933"^^xsd:string ; a owl:Class ; rdfs:label "TopPIC:MIScore threshold"^^xsd:string ; rdfs:subClassOf obo:MS_1002555, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002934 obo:IAO_0000115 "Search engine input parameters specific to TopMG."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002934"^^xsd:string ; a owl:Class ; rdfs:label "TopMG input parameter"^^xsd:string ; rdfs:subClassOf obo:MS_1001302 . obo:MS_1002935 obo:IAO_0000115 "Fixed modifications for TopMG searching."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002935"^^xsd:string ; a owl:Class ; rdfs:label "TopMG:fixed modification"^^xsd:string ; rdfs:subClassOf obo:MS_1002934 . obo:MS_1002936 obo:IAO_0000115 "N-terminal forms of proteins allowed in TopMG searching."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002936"^^xsd:string ; a owl:Class ; rdfs:label "TopMG:N-term form"^^xsd:string ; rdfs:subClassOf obo:MS_1002934 . obo:MS_1002937 obo:IAO_0000115 "Error tolerance for precursor and fragment masses in PPM."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002937"^^xsd:string ; a owl:Class ; rdfs:label "TopMG:error tolerance"^^xsd:string ; rdfs:subClassOf obo:MS_1002934, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1002938 obo:IAO_0000115 "Maximum value of the mass shift (in Dalton)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002938"^^xsd:string ; a owl:Class ; rdfs:label "TopMG:max shift"^^xsd:string ; rdfs:subClassOf obo:MS_1002934, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1002939 obo:IAO_0000115 "Spectrum-level cutoff type for filtering identified proteoform spectrum matches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002939"^^xsd:string ; a owl:Class ; rdfs:label "TopMG:spectral cutoff type"^^xsd:string ; rdfs:subClassOf obo:MS_1002934, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002940 obo:IAO_0000115 "Spectrum-level cutoff value for filtering identified proteoform spectrum matches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002940"^^xsd:string ; a owl:Class ; rdfs:label "TopMG:spectral cutoff value"^^xsd:string ; rdfs:subClassOf obo:MS_1002934, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002941 obo:IAO_0000115 "Proteoform-level cutoff type for filtering identified proteoform spectrum matches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002941"^^xsd:string ; a owl:Class ; rdfs:label "TopMG:proteoform-level cutoff type"^^xsd:string ; rdfs:subClassOf obo:MS_1002934, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002942 obo:IAO_0000115 "Proteoform-level cutoff value for filtering identified proteoform spectrum matches."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002942"^^xsd:string ; a owl:Class ; rdfs:label "TopMG:proteoform-level cutoff value"^^xsd:string ; rdfs:subClassOf obo:MS_1002934, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002943 obo:IAO_0000115 "The text file containing the information of common PTMs."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002943"^^xsd:string ; a owl:Class ; rdfs:label "TopMG:mod file"^^xsd:string ; rdfs:subClassOf obo:MS_1002934 . obo:MS_1002944 obo:IAO_0000115 "Number of threads used in TopMG."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002944"^^xsd:string ; a owl:Class ; rdfs:label "TopMG:thread number"^^xsd:string ; rdfs:subClassOf obo:MS_1002934, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1002945 obo:IAO_0000115 "Proteoform identification using TopFD feature file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002945"^^xsd:string ; a owl:Class ; rdfs:label "TopMG:use TopFD feature"^^xsd:string ; rdfs:subClassOf obo:MS_1002934, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002946 obo:IAO_0000115 "Gap size in constructing proteoform graph."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002946"^^xsd:string ; a owl:Class ; rdfs:label "TopMG:proteoform graph gap size"^^xsd:string ; rdfs:subClassOf obo:MS_1002934, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1002947 obo:IAO_0000115 "Maximum number of variable PTMs."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002947"^^xsd:string ; a owl:Class ; rdfs:label "TopMG:variable PTM number"^^xsd:string ; rdfs:subClassOf obo:MS_1002934, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1002948 obo:IAO_0000115 "Maximum number of variable PTMs in a proteoform graph gap."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002948"^^xsd:string ; a owl:Class ; rdfs:label "TopMG:variable PTM number in proteoform graph gap"^^xsd:string ; rdfs:subClassOf obo:MS_1002934, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1002949 obo:IAO_0000115 "Protein filtering using ASF-DIAGONAL method."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002949"^^xsd:string ; a owl:Class ; rdfs:label "TopMG:use ASF-DIAGONAL"^^xsd:string ; rdfs:subClassOf obo:MS_1002934, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1002950 obo:IAO_0000115 "TopMG spectrum-level E-value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002950"^^xsd:string ; a owl:Class ; rdfs:label "TopMG:spectral E-value"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1002353, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002109 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002951 obo:IAO_0000115 "TopMG spectrum-level FDR."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002951"^^xsd:string ; a owl:Class ; rdfs:label "TopMG:spectral FDR"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1002351, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002952 obo:IAO_0000115 "TopMG proteoform-level FDR."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002952"^^xsd:string ; a owl:Class ; rdfs:label "TopMG:proteoform-level FDR"^^xsd:string ; rdfs:subClassOf obo:MS_1002906, obo:MS_1002908, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002953 obo:IAO_0000115 "TopMG spectrum-level p-value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002953"^^xsd:string ; a owl:Class ; rdfs:label "TopMG:spectral p-value"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1002352, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002954 obo:IAO_0000115 "Structural molecular descriptor for the effective interaction area between the ion and neutral gas measured in ion mobility mass spectrometry."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002954"^^xsd:string ; a owl:Class ; rdfs:label "collisional cross sectional area"^^xsd:string ; rdfs:subClassOf obo:MS_1000861, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000324 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002955 obo:IAO_0000115 "Refined High Resolution mass spectrometry confidence level for annotation of identified compounds as proposed by Schymanski et al. The value slot can have the values 'Level 1', 'Level 2', 'Level 2a', 'Level 2b', 'Level 3', 'Level 4', and 'Level 5'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002955"^^xsd:string ; a owl:Class ; rdfs:label "hr-ms compound identification confidence level"^^xsd:string ; rdfs:subClassOf obo:MS_1002895, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002956 obo:IAO_0000115 "A mass spectrometry peak that represents one or more isotopic ions. The value slot contains a description of the represented isotope set, e.g. 'M+1 peak'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002956"^^xsd:string ; a owl:Class ; rdfs:label "isotopic ion MS peak"^^xsd:string ; rdfs:subClassOf obo:MS_1000231, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002957 obo:IAO_0000115 "The described isotopomer mass spectrometric signal. The value slot contains a description of the represented isotopomer, e.g. '13C peak', '15N peak', '2H peak', '18O peak' or '31P peak'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002957"^^xsd:string ; a owl:Class ; rdfs:label "isotopomer MS peak"^^xsd:string ; rdfs:subClassOf obo:MS_1002956, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002958 obo:IAO_0000115 "The described isotopologue mass spectrometric signal. The value slot contains a description of the represented isotopologue, e.g. '13C1 peak' or '15N1 peak'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002958"^^xsd:string ; a owl:Class ; rdfs:label "isotopologue MS peak"^^xsd:string ; rdfs:subClassOf obo:MS_1002956, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002959 obo:IAO_0000115 "One of several species (or molecular entities) that have the same atomic composition (molecular formula) but different line formulae or different stereochemical formulae."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002959"^^xsd:string ; a owl:Class ; rdfs:label "isomer"^^xsd:string ; rdfs:subClassOf obo:MS_1000859, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002960 obo:IAO_0000115 "An isomer that differs from another only in the spatial distribution of the constitutive isotopic atoms."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002960"^^xsd:string ; a owl:Class ; rdfs:label "isotopomer"^^xsd:string ; rdfs:subClassOf obo:MS_1002959, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002961 obo:IAO_0000115 "A molecular entity that differs only in isotopic composition (number of isotopic substitutions)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002961"^^xsd:string ; a owl:Class ; rdfs:label "isotopologue"^^xsd:string ; rdfs:subClassOf obo:MS_1002959, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1002962 obo:IAO_0000115 "The arithmetic mean."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002962"^^xsd:string ; a owl:Class ; rdfs:label "mean"^^xsd:string ; rdfs:subClassOf obo:MS_1002882 . obo:MS_1002963 obo:IAO_0000115 "The coefficient of variation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002963"^^xsd:string ; a owl:Class ; rdfs:label "variation coefficient"^^xsd:string ; rdfs:subClassOf obo:MS_1002884 . obo:MS_1002964 obo:IAO_0000115 "Lipidomics analysis software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002964"^^xsd:string ; a owl:Class ; rdfs:label "lipidomics analysis software"^^xsd:string ; rdfs:subClassOf obo:MS_1002878 . obo:MS_1002965 obo:IAO_0000115 "Lipid Data Analyzer software for lipid quantification."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002965"^^xsd:string ; a owl:Class ; rdfs:label "Lipid Data Analyzer"^^xsd:string ; rdfs:subClassOf obo:MS_1001457, obo:MS_1002964 . obo:MS_1002966 obo:IAO_0000115 "The Lipid Data Analyzer native chrom format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002966"^^xsd:string ; a owl:Class ; rdfs:label "chrom format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1002967 obo:IAO_0000115 "Software for identification of phospholipids by high-throughput processing of LC-MS and shotgun lipidomics datasets."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002967"^^xsd:string ; a owl:Class ; rdfs:label "LipidHunter"^^xsd:string ; rdfs:subClassOf obo:MS_1001457, obo:MS_1002964 . obo:MS_1002968 obo:IAO_0000115 "Software for consensual cross-platform lipidomics."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002968"^^xsd:string ; a owl:Class ; rdfs:label "LipidXplorer"^^xsd:string ; rdfs:subClassOf obo:MS_1001457, obo:MS_1002964 . obo:MS_1002969 obo:IAO_0000115 "An automated workflow for rule-based lipid identification using untargeted high-resolution tandem mass spectrometry data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002969"^^xsd:string ; a owl:Class ; rdfs:label "LipidMatch"^^xsd:string ; rdfs:subClassOf obo:MS_1001457, obo:MS_1002964 . obo:MS_1002970 obo:IAO_0000115 "Open-source software for automated phospholipid tandem mass spectrometry identification."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002970"^^xsd:string ; a owl:Class ; rdfs:label "Greazy"^^xsd:string ; rdfs:subClassOf obo:MS_1001457, obo:MS_1002964 . obo:MS_1002971 obo:IAO_0000115 "LC-MS-based lipidomics and automated identification of lipids using the LipidBlast in-silico MS/MS library."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002971"^^xsd:string ; a owl:Class ; rdfs:label "LipidBlast"^^xsd:string ; rdfs:subClassOf obo:MS_1001457, obo:MS_1002964 . obo:MS_1002972 obo:IAO_0000115 "A computational lipid identification solution for untargeted lipidomics on data-independent acquisition tandem mass spectrometry platforms."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002972"^^xsd:string ; a owl:Class ; rdfs:label "Lipid-Pro"^^xsd:string ; rdfs:subClassOf obo:MS_1001457, obo:MS_1002964 . obo:MS_1002973 obo:IAO_0000115 "A computational workflow for the discovery of lipids for the identification of eicosanoid-phosphoinositides in platelets."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002973"^^xsd:string ; a owl:Class ; rdfs:label "LipidFinder"^^xsd:string ; rdfs:subClassOf obo:MS_1001457, obo:MS_1002964 . obo:MS_1002974 obo:IAO_0000115 "An integrated software package for high-confidence lipid identification."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002974"^^xsd:string ; a owl:Class ; rdfs:label "LipiDex"^^xsd:string ; rdfs:subClassOf obo:MS_1001457, obo:MS_1002964 . obo:MS_1002975 obo:IAO_0000115 "An-open source software for identifying lipids in LC-MS/MS-based lipidomics data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002975"^^xsd:string ; a owl:Class ; rdfs:label "LIQUID"^^xsd:string ; rdfs:subClassOf obo:MS_1001457, obo:MS_1002964 . obo:MS_1002976 obo:IAO_0000115 "Analysis of lipid experiments, a calculator for m/z values of intact lipid molecules (MS1)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002976"^^xsd:string ; a owl:Class ; rdfs:label "ALEX"^^xsd:string ; rdfs:subClassOf obo:MS_1001457, obo:MS_1002964 . obo:MS_1002977 obo:IAO_0000115 "Analysis of lipid experiments 123, a calculator with m/z values of intact lipid molecules (MS1) and their fragment ions at the MS2 and MS3 level."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002977"^^xsd:string ; a owl:Class ; rdfs:label "ALEX123"^^xsd:string ; rdfs:subClassOf obo:MS_1001457, obo:MS_1002964 . obo:MS_1002978 obo:IAO_0000115 "Software tool for the quantitative analysis of mass spectrometric lipidome data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002978"^^xsd:string ; a owl:Class ; rdfs:label "LIMSA"^^xsd:string ; rdfs:subClassOf obo:MS_1001457, obo:MS_1002964 . obo:MS_1002979 obo:IAO_0000115 "Adduct-Based lipidomics software for the discovery and identification of oxidative stress biomarkers."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002979"^^xsd:string ; a owl:Class ; rdfs:label "LOBSTAHS"^^xsd:string ; rdfs:subClassOf obo:MS_1001457, obo:MS_1002964 . obo:MS_1002980 obo:IAO_0000115 "Lipid qualitative/quantitative analysis software for identification and quantitation of complex lipid molecular species."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002980"^^xsd:string ; a owl:Class ; rdfs:label "LipidQA"^^xsd:string ; rdfs:subClassOf obo:MS_1001457, obo:MS_1002964 . obo:MS_1002981 obo:IAO_0000115 "The Proline software suite for mass spectrometry based proteomics."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002981"^^xsd:string ; a owl:Class ; rdfs:label "Proline"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002982 obo:IAO_0000115 "PepNovo tool for de novo peptide sequencing."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002982"^^xsd:string ; a owl:Class ; rdfs:label "PepNovo"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002983 obo:IAO_0000115 "pNovo tool for de novo peptide sequencing and identification using HCD spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002983"^^xsd:string ; a owl:Class ; rdfs:label "pNovo"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002984 obo:IAO_0000115 "Novor real-time peptide de novo sequencing software tool."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002984"^^xsd:string ; a owl:Class ; rdfs:label "Novor"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002985 obo:IAO_0000115 "Digestion of proteins separated by gel electrophoresis for mass spectrometric characterization of proteins and proteomes."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002985"^^xsd:string ; a owl:Class ; rdfs:label "in-gel digestion"^^xsd:string ; rdfs:subClassOf obo:MS_1000831 . obo:MS_1002986 obo:IAO_0000115 "Digestion of proteins in solution for mass spectrometric characterization of proteins and proteomes."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002986"^^xsd:string ; a owl:Class ; rdfs:label "in-solution digestion"^^xsd:string ; rdfs:subClassOf obo:MS_1000831 . obo:MS_1002987 obo:IAO_0000115 "IdentiPy."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002987"^^xsd:string ; a owl:Class ; rdfs:label "IdentiPy"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1002988 obo:IAO_0000115 "The IdentiPy result 'RHNS'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002988"^^xsd:string ; a owl:Class ; rdfs:label "IdentiPy:RHNS"^^xsd:string ; rdfs:subClassOf obo:MS_1001153, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002989 obo:IAO_0000115 "The IdentiPy result 'hyperscore'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002989"^^xsd:string ; a owl:Class ; rdfs:label "IdentiPy:hyperscore"^^xsd:string ; rdfs:subClassOf obo:MS_1001153, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002990 obo:IAO_0000115 "ms_deisotope, a library for deisotoping and charge state deconvolution of mass spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002990"^^xsd:string ; a owl:Class ; rdfs:label "ms_deisotope"^^xsd:string ; rdfs:subClassOf obo:MS_1001457 . obo:MS_1002991 obo:IAO_0000115 "python-psims, a library for generating mzML and mzIdentML."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002991"^^xsd:string ; a owl:Class ; rdfs:label "python-psims"^^xsd:string ; rdfs:subClassOf obo:MS_1002333 . obo:MS_1002995 obo:IAO_0000115 "Posterior error probability of the best identified peptide of the Andromeda search engine."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002995"^^xsd:string ; a owl:Class ; rdfs:label "Andromeda:PEP"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1002996 obo:IAO_0000115 "Peak list file format of the Andromeda search engine."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002996"^^xsd:string ; a owl:Class ; rdfs:label "Andromeda:apl file format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1002997 obo:IAO_0000115 "Index number of a reanalysis within a ProteomeXchange reprocessed dataset identifier container (RPXD)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002997"^^xsd:string ; a owl:Class ; rdfs:label "ProteomeXchange dataset identifier reanalysis number"^^xsd:string ; rdfs:subClassOf obo:MS_1000878, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_nonNegativeInteger ] . obo:MS_1002998 obo:IAO_0000115 "Shimadzu Scientific Instruments LCMS-9030 Q-TOF MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002998"^^xsd:string ; a owl:Class ; rdfs:label "LCMS-9030"^^xsd:string ; rdfs:subClassOf obo:MS_1000603 . obo:MS_1002999 obo:IAO_0000115 "Shimadzu Scientific Instruments LCMS-8060 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1002999"^^xsd:string ; a owl:Class ; rdfs:label "LCMS-8060"^^xsd:string ; rdfs:subClassOf obo:MS_1000603 . obo:MS_1003000 obo:IAO_0000115 "Shimadzu Scientific Instruments LCMS-8050 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003000"^^xsd:string ; a owl:Class ; rdfs:label "LCMS-8050"^^xsd:string ; rdfs:subClassOf obo:MS_1000603 . obo:MS_1003001 obo:IAO_0000115 "Shimadzu Scientific Instruments LCMS-8045 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003001"^^xsd:string ; a owl:Class ; rdfs:label "LCMS-8045"^^xsd:string ; rdfs:subClassOf obo:MS_1000603 . obo:MS_1003002 obo:IAO_0000115 "Shimadzu Scientific Instruments LCMS-8040 MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003002"^^xsd:string ; a owl:Class ; rdfs:label "LCMS-8040"^^xsd:string ; rdfs:subClassOf obo:MS_1000603 . obo:MS_1003003 obo:IAO_0000115 "Shimadzu Scientific Instruments LCMS-2020."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003003"^^xsd:string ; a owl:Class ; rdfs:label "LCMS-2020"^^xsd:string ; rdfs:subClassOf obo:MS_1000603 . obo:MS_1003004 obo:IAO_0000115 "Bruker Daltonics' maXis II."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003004"^^xsd:string ; a owl:Class ; rdfs:label "maXis II"^^xsd:string ; rdfs:subClassOf obo:MS_1001547 . obo:MS_1003005 obo:IAO_0000115 "Bruker Daltonics' timsTOF Pro."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003005"^^xsd:string ; a owl:Class ; rdfs:label "timsTOF Pro"^^xsd:string ; rdfs:subClassOf obo:MS_1003123 . obo:MS_1003006 obo:IAO_0000115 "Array of population mean ion mobility values based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, normalized for the local conditions and reported in volt-second per square centimeter, corresponding to a spectrum of individual peaks encoded with an m/z array."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003006"^^xsd:string ; a owl:Class ; rdfs:label "mean inverse reduced ion mobility array"^^xsd:string ; rdfs:subClassOf obo:MS_1002893, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002814 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1003007 obo:IAO_0000115 "Array of raw ion mobility values (K or K0) based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, corresponding to a spectrum of individual peaks encoded with an m/z array."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003007"^^xsd:string ; a owl:Class ; rdfs:label "raw ion mobility array"^^xsd:string ; rdfs:subClassOf obo:MS_1002893, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000028 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1003008 obo:IAO_0000115 "Array of raw ion mobility values based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, normalized for the local conditions and reported in volt-second per square centimeter, corresponding to a spectrum of individual peaks encoded with an m/z array."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003008"^^xsd:string ; a owl:Class ; rdfs:label "raw inverse reduced ion mobility array"^^xsd:string ; rdfs:subClassOf obo:MS_1002893, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002814 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1003009 obo:IAO_0000115 "Shimadzu Biotech LCD file format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003009"^^xsd:string ; a owl:Class ; rdfs:label "Shimadzu Biotech LCD format"^^xsd:string ; rdfs:subClassOf obo:MS_1000560 . obo:MS_1003010 obo:IAO_0000115 "Software for lipidome-specific prediction and identification of oxidized phospholipids from LC-MS datasets."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003010"^^xsd:string ; a owl:Class ; rdfs:label "LPPtiger"^^xsd:string ; rdfs:subClassOf obo:MS_1001457, obo:MS_1002964 . obo:MS_1003011 obo:IAO_0000115 "Sequence-tag-based search engine pFind."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003011"^^xsd:string ; a owl:Class ; rdfs:label "pFind"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1003012 obo:IAO_0000115 "Kernel mass spectral dot product scoring function."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003012"^^xsd:string ; a owl:Class ; rdfs:label "KSDP score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ] . obo:MS_1003013 obo:IAO_0000115 "i3-tms search engine and data-analysis software."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003013"^^xsd:string ; a owl:Class ; rdfs:label "i3tms"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1003014 obo:IAO_0000115 "A database search-based peptide identification tool."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003014"^^xsd:string ; a owl:Class ; rdfs:label "MSFragger"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1003015 obo:IAO_0000115 "Peptide that is shared between protein groups and assigned to the protein group with the largest number of identified peptides."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003015"^^xsd:string ; a owl:Class ; rdfs:label "razor peptide"^^xsd:string ; rdfs:subClassOf obo:MS_1000860 . obo:MS_1003016 obo:IAO_0000115 "Fraction of peptide evidence attributable to a protein or a set of indistinguishable proteins."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003016"^^xsd:string ; a owl:Class ; rdfs:label "ProteinProphet:peptide weight"^^xsd:string ; rdfs:subClassOf obo:MS_1001153, obo:MS_1002490, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1003017 obo:IAO_0000115 "Fraction of peptide evidence attributable to a group of proteins."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003017"^^xsd:string ; a owl:Class ; rdfs:label "ProteinProphet:peptide group weight"^^xsd:string ; rdfs:subClassOf obo:MS_1001153, obo:MS_1002490, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1003018 obo:IAO_0000115 "General proteomics processing toolkit for shotgun proteomics."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003018"^^xsd:string ; a owl:Class ; rdfs:label "Philosopher"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1003019 obo:IAO_0000115 "Representation of chromatographic pressure versus time."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003019"^^xsd:string ; a owl:Class ; rdfs:label "pressure chromatogram"^^xsd:string ; rdfs:subClassOf obo:MS_1000626 . obo:MS_1003020 obo:IAO_0000115 "Representation of the chromatographic flow rate versus time."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003020"^^xsd:string ; a owl:Class ; rdfs:label "flow rate chromatogram"^^xsd:string ; rdfs:subClassOf obo:MS_1000626 . obo:MS_1003021 obo:IAO_0000115 "Post-translational modification which is assumed to be present at each instance of a residue type."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003021"^^xsd:string ; a owl:Class ; rdfs:label "Fixed modification"^^xsd:string ; rdfs:subClassOf obo:MS_1001055, obo:MS_1003026 . obo:MS_1003022 obo:IAO_0000115 "Post-translational modification which may or may not be present at a residue type."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003022"^^xsd:string ; a owl:Class ; rdfs:label "Variable modification"^^xsd:string ; rdfs:subClassOf obo:MS_1001055, obo:MS_1003026 . obo:MS_1003023 obo:IAO_0000115 "Cross-Linking MS search engine."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003023"^^xsd:string ; a owl:Class ; rdfs:label "OpenPepXL"^^xsd:string ; rdfs:subClassOf obo:MS_1000752 . obo:MS_1003024 obo:IAO_0000115 "The OpenPepXL score for a cross-link spectrum match."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003024"^^xsd:string ; a owl:Class ; rdfs:label "OpenPepXL:score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1001153, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003025 obo:IAO_0000115 "A named element that is an attribute in a proteomics standards file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003025"^^xsd:string ; a owl:Class ; rdfs:label "named element"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_0000000 ] . obo:MS_1003026 obo:IAO_0000115 "A named element that is an attribute in a mzIdentML file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003026"^^xsd:string ; a owl:Class ; rdfs:label "named element in mzIdentML"^^xsd:string ; rdfs:subClassOf obo:MS_1003025 . obo:MS_1003027 obo:IAO_0000115 "A named element that is an attribute in a mzML file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003027"^^xsd:string ; a owl:Class ; rdfs:label "named element in mzML"^^xsd:string ; rdfs:subClassOf obo:MS_1003025 . obo:MS_1003028 obo:IAO_0000115 "Thermo Scientific Orbitrap Exploris 480 Quadrupole Orbitrap MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003028"^^xsd:string ; a owl:Class ; rdfs:label "Orbitrap Exploris 480"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1003029 obo:IAO_0000115 "Thermo Scientific Orbitrap Eclipse mass spectrometer with Tribrid architecture consisting of quadrupole mass filter, linear ion trap and Orbitrap mass analyzers."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003029"^^xsd:string ; a owl:Class ; rdfs:label "Orbitrap Eclipse"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1003030 obo:IAO_0000115 "Minimum number of significant unique sequences required in a protein hit. The setting is only relevant if the protein grouping strategy is 'family clustering'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003030"^^xsd:string ; a owl:Class ; rdfs:label "Mascot:MinNumSigUniqueSeqs"^^xsd:string ; rdfs:subClassOf obo:MS_1002095, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_nonNegativeInteger ] . obo:MS_1003031 obo:IAO_0000115 "Main identifier of a CPTAC dataset."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003031"^^xsd:string ; a owl:Class ; rdfs:label "CPTAC accession number"^^xsd:string ; rdfs:subClassOf obo:MS_1000878, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003032 obo:IAO_0000115 "The confidence code to describe the confidence of annotated compounds as defined by the MS-DIAL program."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003032"^^xsd:string ; a owl:Class ; rdfs:label "compound identification confidence code in MS-DIAL"^^xsd:string ; rdfs:subClassOf obo:MS_1002895, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003033 obo:IAO_0000115 "Non-inherent characteristic attributed to a molecular entity."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003033"^^xsd:string ; a owl:Class ; rdfs:label "molecular entity attribute"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000881 ] . obo:MS_1003034 obo:IAO_0000115 "Smallest constituent unit of ordinary matter that constitutes a chemical element."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003034"^^xsd:string ; a owl:Class ; rdfs:label "atom"^^xsd:string ; rdfs:subClassOf obo:MS_1000881 . obo:MS_1003035 obo:IAO_0000115 "Low molecular weight (< 900 daltons) organic compound that may regulate a biological process."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003035"^^xsd:string ; a owl:Class ; rdfs:label "small molecule"^^xsd:string ; rdfs:subClassOf obo:MS_1000859 . obo:MS_1003036 obo:IAO_0000115 "Small molecule that is the intermediate end product of metabolism."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003036"^^xsd:string ; a owl:Class ; rdfs:label "metabolite"^^xsd:string ; rdfs:subClassOf obo:MS_1003035 . obo:MS_1003037 obo:IAO_0000115 "Nucleotide containing ribose as its pentose component."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003037"^^xsd:string ; a owl:Class ; rdfs:label "ribonucleotide"^^xsd:string ; rdfs:subClassOf obo:MS_1003035 . obo:MS_1003038 obo:IAO_0000115 "Monomer, or single unit, of DNA, or deoxyribonucleic acid."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003038"^^xsd:string ; a owl:Class ; rdfs:label "deoxyribonucleotide"^^xsd:string ; rdfs:subClassOf obo:MS_1003035 . obo:MS_1003039 obo:IAO_0000115 "Organic molecule that contains amine (-NH2) and carboxyl (-COOH) functional groups, along with a side chain (R group) that is specific to each amino acid."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003039"^^xsd:string ; a owl:Class ; rdfs:label "amino acid"^^xsd:string ; rdfs:subClassOf obo:MS_1003035 . obo:MS_1003040 obo:IAO_0000115 "Simplest form of sugar and the most basic units of carbohydrate that cannot be further hydrolyzed to a simpler molecule."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003040"^^xsd:string ; a owl:Class ; rdfs:label "monosaccharide"^^xsd:string ; rdfs:subClassOf obo:MS_1003035 . obo:MS_1003041 obo:IAO_0000115 "Molecule composed of a chain of nucleotides."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003041"^^xsd:string ; a owl:Class ; rdfs:label "nucleic acid"^^xsd:string ; rdfs:subClassOf obo:MS_1000859 . obo:MS_1003042 obo:IAO_0000115 "Polymeric carbohydrate molecules composed of long chains of monosaccharide units bound together by glycosidic linkages."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003042"^^xsd:string ; a owl:Class ; rdfs:label "polysaccharide"^^xsd:string ; rdfs:subClassOf obo:MS_1000859 . obo:MS_1003043 obo:IAO_0000115 "Number of amino acid residues in a peptide, commonly referred to as the peptide length."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003043"^^xsd:string ; a owl:Class ; rdfs:label "number of residues"^^xsd:string ; rdfs:subClassOf obo:MS_1000887 . obo:MS_1003044 obo:IAO_0000115 "Number of amino acid residue bonds that should have been cleaved by the cleavage agent used, but were not."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003044"^^xsd:string ; a owl:Class ; rdfs:label "number of missed cleavages"^^xsd:string ; rdfs:subClassOf obo:MS_1000887 . obo:MS_1003045 obo:IAO_0000115 "Process of mapping a peptide sequence to a protein sequence."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003045"^^xsd:string ; a owl:Class ; rdfs:label "peptide-to-protein mapping"^^xsd:string ; rdfs:subClassOf obo:MS_1000887 . obo:MS_1003046 obo:IAO_0000115 "Nonphysical characteristic attributed to the result of peptide-to-protein mapping."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003046"^^xsd:string ; a owl:Class ; rdfs:label "peptide-to-protein mapping attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1003045 . obo:MS_1003047 obo:IAO_0000115 "Offset in number of residues from the n terminus of the protein at which the peptide begins. Use 1 when the first residue of the peptide sequence is the first residue of the protein sequence."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003047"^^xsd:string ; a owl:Class ; rdfs:label "protein sequence offset"^^xsd:string ; rdfs:subClassOf obo:MS_1003046, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1003048 obo:IAO_0000115 "Total number of termini that match standard rules for the cleavage agent, 2 when both termini match cleavage agent rules, 1 when only one terminus does, and 0 if neither terminus matches cleavage agent rules."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003048"^^xsd:string ; a owl:Class ; rdfs:label "number of enzymatic termini"^^xsd:string ; rdfs:subClassOf obo:MS_1003046 . obo:MS_1003049 obo:IAO_0000115 "Peptide that contains zero or more mass modifications on the termini or side chains of its amino acid residues, and may be differentiated from other peptidoforms with the same peptide sequence but different mass modification configurations."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003049"^^xsd:string ; a owl:Class ; rdfs:label "peptidoform"^^xsd:string ; rdfs:subClassOf obo:MS_1000860 . obo:MS_1003050 obo:IAO_0000115 "Non-inherent characteristic attributed to a peptidoform."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003050"^^xsd:string ; a owl:Class ; rdfs:label "peptidoform attribute"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003049 ] . obo:MS_1003051 obo:IAO_0000115 "Peptidoform that has formed an adduct with an ion, thereby rendering it potentially detectable with a mass spectrometer. Commonly called a 'precursor' or 'precursor ion' or 'parent ion'."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "parent ion"^^xsd:string, "precursor"^^xsd:string, "precursor ion"^^xsd:string ; oboInOwl:id "MS:1003051"^^xsd:string ; a owl:Class ; rdfs:label "peptidoform ion"^^xsd:string ; rdfs:subClassOf obo:MS_1003049 . obo:MS_1003052 obo:IAO_0000115 "Inherent or measurable characteristic of a peptidoform ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003052"^^xsd:string ; a owl:Class ; rdfs:label "peptidoform ion property"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003051 ] . obo:MS_1003053 obo:IAO_0000115 "Mass-to-charge ratio of a peptidoform ion composed of the most common isotope of each atom computed from the putative knowledge of its molecular constituents."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003053"^^xsd:string ; a owl:Class ; rdfs:label "theoretical monoisotopic m/z"^^xsd:string ; rdfs:subClassOf obo:MS_1003052, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1003054 obo:IAO_0000115 "Mass-to-charge ratio of a peptidoform ion computed from the putative knowledge of its molecular constituents, averaged over the distribution of naturally occurring isotopes."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003054"^^xsd:string ; a owl:Class ; rdfs:label "theoretical average m/z"^^xsd:string ; rdfs:subClassOf obo:MS_1003052, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1003055 obo:IAO_0000115 "Product of a direct addition of two or more distinct molecules, resulting in a single reaction product containing all atoms of all components. The resultant is considered a distinct molecular species."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003055"^^xsd:string ; a owl:Class ; rdfs:label "adduct"^^xsd:string ; rdfs:subClassOf obo:MS_1000859 . obo:MS_1003056 obo:IAO_0000115 "Physical measurable characteristic of an adduct ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003056"^^xsd:string ; a owl:Class ; rdfs:label "adduct ion property"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000353 ] . obo:MS_1003057 obo:IAO_0000115 "Ordinal number of the scan indicating its order of acquisition within a mass spectrometry acquisition run."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003057"^^xsd:string ; a owl:Class ; rdfs:label "scan number"^^xsd:string ; rdfs:subClassOf obo:MS_1000503 . obo:MS_1003058 obo:IAO_0000115 "Inherent or measurable characteristic of a spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003058"^^xsd:string ; a owl:Class ; rdfs:label "spectrum property"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000442 ] . obo:MS_1003059 obo:IAO_0000115 "Number of peaks or features in a spectrum. For a peak-picked spectrum, this will correspond to the number of data points. For a non-peak-picked spectrum, this corresponds to the number of features discernable in the spectrum, which will be fewer than the number of data points."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003059"^^xsd:string ; a owl:Class ; rdfs:label "number of peaks"^^xsd:string ; rdfs:subClassOf obo:MS_1003058, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1003060 obo:IAO_0000115 "Number of data points in a spectrum. For a peak-picked spectrum, this will correspond to the number of peaks. For a non-peak-picked spectrum, this corresponds to the number of values in the data array, which are not all peaks."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003060"^^xsd:string ; a owl:Class ; rdfs:label "number of data points"^^xsd:string ; rdfs:subClassOf obo:MS_1003058, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1003061 obo:IAO_0000115 "Label attached to a spectrum uniquely naming it within a collection of spectra, often in a spectral library. It is often a string combination of peptide sequence, charge, mass modifications, collision energy, but will obviously be different for small molecules or unidentified spectra. It must be unique within a collection."^^xsd:string ; oboInOwl:hasExactSynonym "spectrum name"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003061"^^xsd:string ; a owl:Class ; rdfs:label "library spectrum name"^^xsd:string ; rdfs:subClassOf obo:MS_1000499, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003062 obo:IAO_0000115 "Integer index value that indicates the spectrum's ordered position within a spectral library. By custom, index counters should begin with 0."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003062"^^xsd:string ; a owl:Class ; rdfs:label "library spectrum index"^^xsd:string ; rdfs:subClassOf obo:MS_1003234, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1003063 obo:IAO_0000115 "PSI universal spectrum identifier (USI) multipart key that uniquely identifies a spectrum available in a ProteomeXchange datasets or spectral library."^^xsd:string ; oboInOwl:hasExactSynonym "USI"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003063"^^xsd:string ; a owl:Class ; rdfs:label "universal spectrum identifier"^^xsd:string ; rdfs:subClassOf obo:MS_1000499, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003064 obo:IAO_0000115 "Non-inherent characteristic attributed to spectrum aggregation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003064"^^xsd:string ; a owl:Class ; rdfs:label "spectrum aggregation attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1000499 . obo:MS_1003065 obo:IAO_0000115 "Categorization of a spectrum based on its type of aggregation (e.g., individual spectrum, consensus spectrum, best replicate spectrum, etc.)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003065"^^xsd:string ; a owl:Class ; rdfs:label "spectrum aggregation type"^^xsd:string ; rdfs:subClassOf obo:MS_1003064 . obo:MS_1003066 obo:IAO_0000115 "Spectrum that is not the result of some aggregation process."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003066"^^xsd:string ; a owl:Class ; rdfs:label "singleton spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1003065 . obo:MS_1003067 obo:IAO_0000115 "Spectrum that is the result of merging several replicate spectra to form a spectrum that is more representative of its class and ideally less noisy that any of its source replicates."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003067"^^xsd:string ; a owl:Class ; rdfs:label "consensus spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1003065 . obo:MS_1003068 obo:IAO_0000115 "Spectrum that is considered the most representative from a pool of replicate spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003068"^^xsd:string ; a owl:Class ; rdfs:label "best replicate spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1003065 . obo:MS_1003069 obo:IAO_0000115 "Number of replicate spectra available for use during the aggregation process."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003069"^^xsd:string ; a owl:Class ; rdfs:label "number of replicate spectra available"^^xsd:string ; rdfs:subClassOf obo:MS_1003064, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1003070 obo:IAO_0000115 "Number of replicate spectra used during the aggregation process. This is generally applicable when there are many replicates available, but some are discarded as being low S/N, blended, or otherwise unsuitable, and the remaining set is then used for merging via a consensus algorithm."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003070"^^xsd:string ; a owl:Class ; rdfs:label "number of replicate spectra used"^^xsd:string ; rdfs:subClassOf obo:MS_1003064, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1003071 obo:IAO_0000115 "Non-inherent characteristic attributed to spectrum aggregation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003071"^^xsd:string ; a owl:Class ; rdfs:label "spectrum origin attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1000499 . obo:MS_1003072 obo:IAO_0000115 "Categorization of a spectrum based on its origin (e.g., observed spectrum, predicted spectrum, demultiplexed spectrum, etc.)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003072"^^xsd:string ; a owl:Class ; rdfs:label "spectrum origin type"^^xsd:string ; rdfs:subClassOf obo:MS_1003071 . obo:MS_1003073 obo:IAO_0000115 "Spectrum that originates from an analysis attempt of a single analyte species on an instrument."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003073"^^xsd:string ; a owl:Class ; rdfs:label "observed spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1003072 . obo:MS_1003074 obo:IAO_0000115 "Spectrum that originates from a compututational algorithm that attempts to predict spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003074"^^xsd:string ; a owl:Class ; rdfs:label "predicted spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1003072 . obo:MS_1003075 obo:IAO_0000115 "Spectrum that originates from an attempted extraction of a single ion spieces from a multiplexed spectrum that contains multiple ion species."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003075"^^xsd:string ; a owl:Class ; rdfs:label "demultiplexed spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1003072 . obo:MS_1003076 obo:IAO_0000115 "Spectrum provided in the form of plain numerical values without any information pertaining to the interpretation of features."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003076"^^xsd:string ; a owl:Class ; rdfs:label "uninterpreted spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1000442 . obo:MS_1003077 obo:IAO_0000115 "Spectrum provided in a form where specific features of the spectrum are interpreted to provide putative explanations for some feature."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003077"^^xsd:string ; a owl:Class ; rdfs:label "interpreted spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1000442 . obo:MS_1003078 obo:IAO_0000115 "Non-inherent characteristic attributed to an interpreted spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003078"^^xsd:string ; a owl:Class ; rdfs:label "interpreted spectrum attribute"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003077 ] . obo:MS_1003079 obo:IAO_0000115 "Fraction of intensity summed from all unassigned peaks divided by the intensity summed from all peaks in the spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003079"^^xsd:string ; a owl:Class ; rdfs:label "total unassigned intensity fraction"^^xsd:string ; rdfs:subClassOf obo:MS_1003078 . obo:MS_1003080 obo:IAO_0000115 "Fraction of intensity summed from unassigned peaks among the top 20 divided by the intensity summed from all top 20 peaks in the spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003080"^^xsd:string ; a owl:Class ; rdfs:label "top 20 peak unassigned intensity fraction"^^xsd:string ; rdfs:subClassOf obo:MS_1003078, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1003081 obo:IAO_0000115 "Monoisotopic mass delta in Daltons of an amino acid residue modification whose atomic composition or molecular identity has not been determined. This term should not be used for modifications of known molecular identity such as those available in Unimod, RESID or PSI-MOD. This term MUST NOT be used inside the element in mzIdentML."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003081"^^xsd:string ; a owl:Class ; rdfs:label "unidentified modification monoisotopic mass delta"^^xsd:string ; rdfs:subClassOf obo:MS_1001471, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000221 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003082 obo:IAO_0000115 "Data processing software for untargeted metabolomics and lipidomics that supports multiple instruments and MS vendors."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003082"^^xsd:string ; a owl:Class ; rdfs:label "MS-DIAL"^^xsd:string ; rdfs:subClassOf obo:MS_1001457, obo:MS_1002878 . obo:MS_1003083 obo:IAO_0000115 "Data file that contains original data as generated by an instrument, although not necessarily in the original data format (i.e. an original raw file converted to a different format is still a raw data file)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003083"^^xsd:string ; a owl:Class ; rdfs:label "raw data file"^^xsd:string ; rdfs:subClassOf obo:MS_1000577 . obo:MS_1003084 obo:IAO_0000115 "File that contains data that has been substantially processed or transformed from what was originally acquired by an instrument."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003084"^^xsd:string ; a owl:Class ; rdfs:label "processed data file"^^xsd:string ; rdfs:subClassOf obo:MS_1000577, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003085 obo:IAO_0000115 "Intensity of the precursor ion in the previous MSn-1 scan (prior in time to the referencing MSn scan). For an MS2 scan, this means the MS1 precursor intensity. It is unspecified on whether this is an apex (across m/z) intensity, integrated (across m/z) intensity, a centroided peak intensity of unknown origin, or even summed across several isotopes."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003085"^^xsd:string ; a owl:Class ; rdfs:label "previous MSn-1 scan precursor intensity"^^xsd:string ; rdfs:subClassOf obo:MS_1000499, obo:MS_1001141, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003086 obo:IAO_0000115 "Intensity of the precursor ion current as measured by its apex point over time and m/z. It is unspecified whether this is the intensity of the selected isotope or the most intense isotope."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003086"^^xsd:string ; a owl:Class ; rdfs:label "precursor apex intensity"^^xsd:string ; rdfs:subClassOf obo:MS_1000499, obo:MS_1001141, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1003087 obo:IAO_0000115 "Dataset for which the identifications and/or spectra/traces are in formats that can be parsed by the hosting data repository such that internal references between identifications and spectra/traces are preserved and browsable at the repository. However, some metadata is not properly described due to lack of CV terms or some auxiliary data, such as data used to create a spectral library or a sequence search database crucial to the analysis, is not available."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003087"^^xsd:string ; a owl:Class ; rdfs:label "supported by repository but incomplete data and/or metadata"^^xsd:string ; rdfs:subClassOf obo:MS_1002844 . obo:MS_1003088 obo:IAO_0000115 "Data array compression using mantissa bit truncation followed by zlib compression."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003088"^^xsd:string ; a owl:Class ; rdfs:label "truncation and zlib compression"^^xsd:string ; rdfs:subClassOf obo:MS_1000572 . obo:MS_1003089 obo:IAO_0000115 "Data array compression using mantissa bit truncation, delta prediction and zlib compression."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003089"^^xsd:string ; a owl:Class ; rdfs:label "truncation, delta prediction and zlib compression"^^xsd:string ; rdfs:subClassOf obo:MS_1000572 . obo:MS_1003090 obo:IAO_0000115 "Data array compression using mantissa bit truncation, linear prediction and zlib compression."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003090"^^xsd:string ; a owl:Class ; rdfs:label "truncation, linear prediction and zlib compression"^^xsd:string ; rdfs:subClassOf obo:MS_1000572 . obo:MS_1003091 obo:IAO_0000115 "Settable parameter for a binary data compression event."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003091"^^xsd:string ; a owl:Class ; rdfs:label "binary data compression parameter"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000442 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000625 ] . obo:MS_1003092 obo:IAO_0000115 "Number of extraneous mantissa bits truncated to improve subsequent compression."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003092"^^xsd:string ; a owl:Class ; rdfs:label "number of mantissa bits truncated"^^xsd:string ; rdfs:subClassOf obo:MS_1003091, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_positiveInteger ] . obo:MS_1003093 obo:IAO_0000115 "Metalloendopeptidase found in the mushroom Grifola frondosa that cleaves proteins on the amino side of lysine residues."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003093"^^xsd:string ; a owl:Class ; rdfs:label "Lys-N"^^xsd:string ; rdfs:subClassOf obo:MS_1001045, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001335 ] . obo:MS_1003094 obo:IAO_0000115 "Thermo Scientific Orbitrap Exploris 240 Quadrupole Orbitrap MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003094"^^xsd:string ; a owl:Class ; rdfs:label "Orbitrap Exploris 240"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1003095 obo:IAO_0000115 "Thermo Scientific Orbitrap Exploris 120 Quadrupole Orbitrap MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003095"^^xsd:string ; a owl:Class ; rdfs:label "Orbitrap Exploris 120"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1003096 obo:IAO_0000115 "Thermo Scientific LTQ Orbitrap Velos Pro, often just referred to as the Orbitrap Velos Pro."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003096"^^xsd:string ; a owl:Class ; rdfs:label "LTQ Orbitrap Velos Pro"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1003097 obo:IAO_0000115 "The probability based MaxQuant protein group score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003097"^^xsd:string ; a owl:Class ; rdfs:label "MaxQuant protein group-level score"^^xsd:string ; rdfs:subClassOf obo:MS_1002368, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003098 obo:IAO_0000115 "Peptide probability from Andromeda."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003098"^^xsd:string ; a owl:Class ; rdfs:label "Andromeda peptide PEP"^^xsd:string ; rdfs:subClassOf obo:MS_1002358, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003099 obo:IAO_0000115 "Peptide probability from MaxQuant-DIA algorithm."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003099"^^xsd:string ; a owl:Class ; rdfs:label "MaxQuant-DIA peptide PEP"^^xsd:string ; rdfs:subClassOf obo:MS_1002358, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003100 obo:IAO_0000115 "PSM evidence score from MaxQuant-DIA algorithm."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003100"^^xsd:string ; a owl:Class ; rdfs:label "MaxQuant-DIA score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003101 obo:IAO_0000115 "PSM evidence PEP probability from MaxQuant-DIA algorithm."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003101"^^xsd:string ; a owl:Class ; rdfs:label "MaxQuant-DIA PEP"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003102 obo:IAO_0000115 "Term for a comment field withing the NIST msp file format"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003102"^^xsd:string ; a owl:Class ; rdfs:label "NIST msp comment"^^xsd:string ; rdfs:subClassOf obo:MS_1000499, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003103 obo:IAO_0000115 "Interpretation format used for annotating individual spectrum ion peaks."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003103"^^xsd:string ; a owl:Class ; rdfs:label "ion interpretation format"^^xsd:string ; rdfs:subClassOf obo:MS_1003078 . obo:MS_1003104 obo:IAO_0000115 "Interpretation format designed primarily for peptides, with allowances for generic chemical formulas and other miscellaneous named ions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003104"^^xsd:string ; a owl:Class ; rdfs:label "peptide ion interpretation format"^^xsd:string ; rdfs:subClassOf obo:MS_1003103 . obo:MS_1003105 obo:IAO_0000115 "Interpretation format designed specifically for cross-linked peptide ion peaks."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003105"^^xsd:string ; a owl:Class ; rdfs:label "cross-linked peptide ion interpretation format"^^xsd:string ; rdfs:subClassOf obo:MS_1003103 . obo:MS_1003106 obo:IAO_0000115 "Interpretation format designed specifically for glycan ion peaks."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003106"^^xsd:string ; a owl:Class ; rdfs:label "glycan ion interpretation format"^^xsd:string ; rdfs:subClassOf obo:MS_1003103 . obo:MS_1003107 obo:IAO_0000115 "Interpretation format designed specifically for lipid ion peaks."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003107"^^xsd:string ; a owl:Class ; rdfs:label "lipid ion interpretation format"^^xsd:string ; rdfs:subClassOf obo:MS_1003103 . obo:MS_1003108 obo:IAO_0000115 "PatternLab for Proteomics is an integrated computational environment for analyzing shotgun proteomic data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003108"^^xsd:string ; a owl:Class ; rdfs:label "PatternLab"^^xsd:string ; rdfs:subClassOf obo:MS_1001139, obo:MS_1001456 . obo:MS_1003109 obo:IAO_0000115 "Identifying cross-linked peptides in complex protein mixtures"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003109"^^xsd:string ; a owl:Class ; rdfs:label "SIM-XL"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1003110 obo:IAO_0000115 "SIM-XL identification search engine score"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003110"^^xsd:string ; a owl:Class ; rdfs:label "SIM-XL score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003111 obo:IAO_0000115 "Quantification of cross-linked peptides in complex protein mixtures"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003111"^^xsd:string ; a owl:Class ; rdfs:label "QUIN-XL"^^xsd:string ; rdfs:subClassOf obo:MS_1001139 . obo:MS_1003112 obo:IAO_0000115 "Thermo Scientific Orbitrap ID-X mass spectrometer with Tribrid architecture consisting of quadrupole mass filter, linear ion trap and Orbitrap mass analyzers."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003112"^^xsd:string ; a owl:Class ; rdfs:label "Orbitrap ID-X"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1003113 obo:IAO_0000115 "The OpenMS ConsesusID tool posterior error probability"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003113"^^xsd:string ; a owl:Class ; rdfs:label "OpenMS:ConsensusID PEP"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003114 obo:IAO_0000115 "The score of the best PSM selected by the underlying identification tool"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003114"^^xsd:string ; a owl:Class ; rdfs:label "OpenMS:Best PSM Score"^^xsd:string ; rdfs:subClassOf obo:MS_1002358, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003115 obo:IAO_0000115 "The OpenMS Target-decoy q-values at PSM level"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003115"^^xsd:string ; a owl:Class ; rdfs:label "OpenMS:Target-decoy PSM q-value"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003116 obo:IAO_0000115 "The OpenMS Target-decoy q-values at peptide sequence level"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003116"^^xsd:string ; a owl:Class ; rdfs:label "OpenMS:Target-decoy peptide q-value"^^xsd:string ; rdfs:subClassOf obo:MS_1002358, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003117 obo:IAO_0000115 "The OpenMS Target-decoy q-values at protein level"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003117"^^xsd:string ; a owl:Class ; rdfs:label "OpenMS:Target-decoy protein q-value"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003118 obo:IAO_0000115 "A Method for Efficient High-Confidence Protein Inference. The tool is part of the OpenMS framework"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003118"^^xsd:string ; a owl:Class ; rdfs:label "EPIFANY"^^xsd:string ; rdfs:subClassOf obo:MS_1000752, obo:MS_1001456 . obo:MS_1003119 obo:IAO_0000115 "Protein Posterior probability calculated by EPIFANY protein inference algorithm"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003119"^^xsd:string ; a owl:Class ; rdfs:label "EPIFANY:Protein posterior probability"^^xsd:string ; rdfs:subClassOf obo:MS_1002363, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003120 obo:IAO_0000115 "The data type LFQ intensity produced by OpenMS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003120"^^xsd:string ; a owl:Class ; rdfs:label "OpenMS:LFQ intensity"^^xsd:string ; rdfs:subClassOf obo:MS_1001805, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003121 obo:IAO_0000115 "The data type LFQ spectral count produced by OpenMS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003121"^^xsd:string ; a owl:Class ; rdfs:label "OpenMS:LFQ spectral count"^^xsd:string ; rdfs:subClassOf obo:MS_1001805, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003122 obo:IAO_0000115 "Bruker Daltonics' rapiflex: MALDI TOF/TOF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003122"^^xsd:string ; a owl:Class ; rdfs:label "rapifleX"^^xsd:string ; rdfs:subClassOf obo:MS_1001534 . obo:MS_1003123 obo:IAO_0000115 "Bruker Daltonics timsTOF series"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003123"^^xsd:string ; a owl:Class ; rdfs:label "Bruker Daltonics timsTOF series"^^xsd:string ; rdfs:subClassOf obo:MS_1000122 . obo:MS_1003124 obo:IAO_0000115 "Bruker Daltonics' timsTOF fleX"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003124"^^xsd:string ; a owl:Class ; rdfs:label "timsTOF fleX"^^xsd:string ; rdfs:subClassOf obo:MS_1003123 . obo:MS_1003125 obo:IAO_0000115 "ProSight spectrum-level Q-value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003125"^^xsd:string ; a owl:Class ; rdfs:label "ProSight:spectral Q-value"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1002354, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002109 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003126 obo:IAO_0000115 "ProSight spectrum-level P-score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003126"^^xsd:string ; a owl:Class ; rdfs:label "ProSight:spectral P-score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002109 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003127 obo:IAO_0000115 "ProSight spectrum-level E-value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003127"^^xsd:string ; a owl:Class ; rdfs:label "ProSight:spectral E-value"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, obo:MS_1002353, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002109 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003128 obo:IAO_0000115 "ProSight spectrum-level C-score."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003128"^^xsd:string ; a owl:Class ; rdfs:label "ProSight:spectral C-score"^^xsd:string ; rdfs:subClassOf obo:MS_1001143, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002108 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003129 obo:IAO_0000115 "Estimation of the Q-value for proteoforms."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003129"^^xsd:string ; a owl:Class ; rdfs:label "proteoform-level Q-value"^^xsd:string ; rdfs:subClassOf obo:MS_1002905, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002109 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003130 obo:IAO_0000115 "ProSight proteoform-level Q-value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003130"^^xsd:string ; a owl:Class ; rdfs:label "ProSight:proteoform Q-value"^^xsd:string ; rdfs:subClassOf obo:MS_1003129, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002109 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003131 obo:IAO_0000115 "Isoform level information."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003131"^^xsd:string ; a owl:Class ; rdfs:label "isoform-level identification attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1002694 . obo:MS_1003132 obo:IAO_0000115 "Identification confidence metric for a isoform."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003132"^^xsd:string ; a owl:Class ; rdfs:label "isoform-level identification statistic"^^xsd:string ; rdfs:subClassOf obo:MS_1003131 . obo:MS_1003133 obo:IAO_0000115 "Estimation of the Q-value for isoforms."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003133"^^xsd:string ; a owl:Class ; rdfs:label "isoform-level Q-value"^^xsd:string ; rdfs:subClassOf obo:MS_1003132, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002305 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003134 obo:IAO_0000115 "ProSight isoform-level Q-value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003134"^^xsd:string ; a owl:Class ; rdfs:label "ProSight:isoform Q-value"^^xsd:string ; rdfs:subClassOf obo:MS_1003133, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002109 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003135 obo:IAO_0000115 "ProSight protein-level Q-value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003135"^^xsd:string ; a owl:Class ; rdfs:label "ProSight:protein Q-value"^^xsd:string ; rdfs:subClassOf obo:MS_1001869, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002109 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_double ] . obo:MS_1003136 obo:IAO_0000115 "Search engine input parameters specific to ProSight."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003136"^^xsd:string ; a owl:Class ; rdfs:label "ProSight input parameter"^^xsd:string ; rdfs:subClassOf obo:MS_1001302 . obo:MS_1003137 obo:IAO_0000115 "Search engine input parameters specific to TDPortal."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003137"^^xsd:string ; a owl:Class ; rdfs:label "TDPortal input parameter"^^xsd:string ; rdfs:subClassOf obo:MS_1001302 . obo:MS_1003138 obo:IAO_0000115 "If true, runs delta m mode in ProSight."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003138"^^xsd:string ; a owl:Class ; rdfs:label "ProSight:Run delta m mode"^^xsd:string ; rdfs:subClassOf obo:MS_1003136, obo:MS_1003137, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1003139 obo:IAO_0000115 "If true, runs Subsequence Search mode in ProSight."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003139"^^xsd:string ; a owl:Class ; rdfs:label "ProSight:Run Subsequence Search mode"^^xsd:string ; rdfs:subClassOf obo:MS_1003136, obo:MS_1003137, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1003140 obo:IAO_0000115 "If true, runs Annotated Proteoform Search mode in ProSight."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003140"^^xsd:string ; a owl:Class ; rdfs:label "ProSight:Run Annotated Proteoform Search mode"^^xsd:string ; rdfs:subClassOf obo:MS_1003136, obo:MS_1003137, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:MS_1003141 obo:IAO_0000115 "ProSight: Database search engine for top-down proteomics."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003141"^^xsd:string ; a owl:Class ; rdfs:label "ProSight"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1003142 obo:IAO_0000115 "TDPortal: Database search engine for top-down proteomics."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003142"^^xsd:string ; a owl:Class ; rdfs:label "TDPortal"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1003143 obo:IAO_0000115 "A data array of mass values."^^xsd:string ; oboInOwl:hasDbXref "binary-data-type:MS:1000521"^^xsd:string, "binary-data-type:MS:1000523"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003143"^^xsd:string ; a owl:Class ; rdfs:label "mass array"^^xsd:string ; rdfs:subClassOf obo:MS_1000513, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000221 ] . obo:MS_1003144 obo:IAO_0000115 "SCIEX Triple Quad 7500."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003144"^^xsd:string ; a owl:Class ; rdfs:label "Triple Quad 7500"^^xsd:string ; rdfs:subClassOf obo:MS_1000121 . obo:MS_1003145 obo:IAO_0000115 "Cross-platform software to convert Thermo RAW files to a number of open formats."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003145"^^xsd:string ; a owl:Class ; rdfs:label "ThermoRawFileParser"^^xsd:string ; rdfs:subClassOf obo:MS_1001457 . obo:MS_1003146 obo:IAO_0000115 "Python module that helps handling various proteomics data analysis tasks."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003146"^^xsd:string ; a owl:Class ; rdfs:label "pyteomics"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1003147 obo:IAO_0000115 "Probability that one mass modification has been correctly localized to a specific residue as computed by PTMProphet."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003147"^^xsd:string ; a owl:Class ; rdfs:label "PTMProphet probability"^^xsd:string ; rdfs:subClassOf obo:MS_1001968, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002505 ] . obo:MS_1003148 obo:IAO_0000115 "PSM-specific average of the m best site probabilities over all potential sites where m is the number of modifications of a specific type, as computed by PTMProphet."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003148"^^xsd:string ; a owl:Class ; rdfs:label "PTMProphet mean best probability"^^xsd:string ; rdfs:subClassOf obo:MS_1001968, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002505 ] . obo:MS_1003149 obo:IAO_0000115 " PTMProphet-computed PSM-specific normalized (0.0 – 1.0) measure of information content across all modifications of a specific type."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003149"^^xsd:string ; a owl:Class ; rdfs:label "PTMProphet normalized information content"^^xsd:string ; rdfs:subClassOf obo:MS_1001968, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002505 ] . obo:MS_1003150 obo:IAO_0000115 " PTMProphet-computed PSM-specific measure of information content per modification type ranging from 0 to m, where m is the number of modifications of a specific type."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003150"^^xsd:string ; a owl:Class ; rdfs:label "PTMProphet information content"^^xsd:string ; rdfs:subClassOf obo:MS_1001968, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002505 ] . obo:MS_1003151 obo:IAO_0000115 "SHA-256 (member of Secure Hash Algorithm-2 family) is a cryptographic hash function designed by the National Security Agency (NSA) and published by the NIST as a U. S. government standard. It is also used to verify file integrity."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003151"^^xsd:string ; a owl:Class ; rdfs:label "SHA-256"^^xsd:string ; rdfs:subClassOf obo:MS_1000561, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003152 obo:IAO_0000115 "Shimadzu Scientific Instruments GCMS-QP2010SE."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003152"^^xsd:string ; a owl:Class ; rdfs:label "GCMS-QP2010SE"^^xsd:string ; rdfs:subClassOf obo:MS_1000603 . obo:MS_1003153 obo:IAO_0000115 "Array of raw ion mobility values from a drift time device, reported in seconds (or milliseconds), corresponding to a spectrum of individual peaks encoded with an m/z array."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003153"^^xsd:string ; a owl:Class ; rdfs:label "raw ion mobility drift time array"^^xsd:string ; rdfs:subClassOf obo:MS_1002893, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000028 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1003154 obo:IAO_0000115 "Array of ion mobility values (K or K0) based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, as an average property of an analyte post peak-detection, weighted charge state reduction, and/or adduct aggregation, corresponding to a spectrum of individual peaks encoded with an m/z array."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003154"^^xsd:string ; a owl:Class ; rdfs:label "deconvoluted ion mobility array"^^xsd:string ; rdfs:subClassOf obo:MS_1002893, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000028 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1003155 obo:IAO_0000115 "Array of ion mobility values based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, normalized for the local conditions and reported in volt-second per square centimeter, as an average property of an analyte post peak-detection, weighted charge state reduction, and/or adduct aggregation, corresponding to a spectrum of individual peaks encoded with an m/z array."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003155"^^xsd:string ; a owl:Class ; rdfs:label "deconvoluted inverse reduced ion mobility array"^^xsd:string ; rdfs:subClassOf obo:MS_1002893, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002814 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1003156 obo:IAO_0000115 "Array of mean ion mobility values from a drift time device, reported in seconds (or milliseconds), as an average property of an analyte post peak-detection, weighted charge state reduction, and/or adduct aggregation, corresponding to a spectrum of individual peaks encoded with an m/z array."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003156"^^xsd:string ; a owl:Class ; rdfs:label "deconvoluted ion mobility drift time array"^^xsd:string ; rdfs:subClassOf obo:MS_1002893, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000028 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1003157 obo:IAO_0000115 "Array of m/z values representing the lower bound m/z of the quadrupole position at each point in the spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003157"^^xsd:string ; a owl:Class ; rdfs:label "scanning quadrupole position lower bound m/z array"^^xsd:string ; rdfs:subClassOf obo:MS_1000513, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1003158 obo:IAO_0000115 "Array of m/z values representing the upper bound m/z of the quadrupole position at each point in the spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003158"^^xsd:string ; a owl:Class ; rdfs:label "scanning quadrupole position upper bound m/z array"^^xsd:string ; rdfs:subClassOf obo:MS_1000513, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1003159 obo:IAO_0000115 "Indicates an acquisition mode in which the isolation window is a full range, rather than a subset of the full range."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003159"^^xsd:string ; a owl:Class ; rdfs:label "isolation window full range"^^xsd:string ; rdfs:subClassOf obo:MS_1000792 . obo:MS_1003160 obo:IAO_0000115 "Proteomics Standards Initiative mzQC format for quality control data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003160"^^xsd:string ; a owl:Class ; rdfs:label "mzQC format"^^xsd:string ; rdfs:subClassOf obo:MS_1003161 . obo:MS_1003161 obo:IAO_0000115 "Grouping term for quality control data formats."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003161"^^xsd:string ; a owl:Class ; rdfs:label "quality control data format"^^xsd:string ; rdfs:subClassOf obo:MS_1001459 . obo:MS_1003162 obo:IAO_0000115 "Proteomics (PTX) - QualityControl (QC) software for QC report generation and visualization."^^xsd:string ; oboInOwl:hasExactSynonym "PTXQC"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003162"^^xsd:string ; a owl:Class ; rdfs:label "PTX-QC"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1003163 obo:IAO_0000115 "The set of analyte identifiers that compose an interpretation of a spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003163"^^xsd:string ; a owl:Class ; rdfs:label "analyte mixture members"^^xsd:string ; rdfs:subClassOf obo:MS_1003078, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002712 ] . obo:MS_1003164 obo:IAO_0000115 "QuaMeter IDFree software for QC metric calculation."^^xsd:string ; oboInOwl:hasExactSynonym "QuaMeter"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003164"^^xsd:string ; a owl:Class ; rdfs:label "QuaMeter IDFree"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1003165 obo:IAO_0000115 "iMonDB software to extract, store, and manage mass spectrometry instrument parameters from raw data files."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003165"^^xsd:string ; a owl:Class ; rdfs:label "iMonDB"^^xsd:string ; rdfs:subClassOf obo:MS_1001456 . obo:MS_1003166 obo:IAO_0000115 "Fraction of intensity summed from all peaks that can be attributed to expected fragments of the analyte, divided by the intensity summed from all peaks in the spectrum"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003166"^^xsd:string ; a owl:Class ; rdfs:label "assigned intensity fraction"^^xsd:string ; rdfs:subClassOf obo:MS_1003078, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1003167 obo:IAO_0000115 "The fraction of total intensities in the isolation window in the previous round of MS (i.e. the MSn-1 scan) that can be assigned to this identified analyte"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003167"^^xsd:string ; a owl:Class ; rdfs:label "MSn-1 isolation window precursor purity"^^xsd:string ; rdfs:subClassOf obo:MS_1003078, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1003168 obo:IAO_0000115 "A free-text string providing additional information of the library spectrum not encoded otherwise, usually for human use and not parsed by software tools."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003168"^^xsd:string ; a owl:Class ; rdfs:label "library spectrum comment"^^xsd:string ; rdfs:subClassOf obo:MS_1003234, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003169 obo:IAO_0000115 "Sequence string describing the amino acids and mass modifications of a peptidoform using the PSI ProForma notation"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003169"^^xsd:string ; a owl:Class ; rdfs:label "proforma peptidoform sequence"^^xsd:string ; rdfs:subClassOf obo:MS_1000889, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003170 obo:IAO_0000115 "A collection of spectra organized by their originating analyte, compiled deliberately for use in MS data analysis in future experiments"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003170"^^xsd:string ; a owl:Class ; rdfs:label "spectral library"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_0000000 ] . obo:MS_1003171 obo:IAO_0000115 "An attribute of a spectral library"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003171"^^xsd:string ; a owl:Class ; rdfs:label "spectral library attribute"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003170 ] . obo:MS_1003172 obo:IAO_0000115 "An entry in a spectral library representing a spectrum"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003172"^^xsd:string ; a owl:Class ; rdfs:label "library spectrum"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003170 ] . obo:MS_1003173 obo:IAO_0000115 "An attribute that takes on a numeric value"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003173"^^xsd:string ; a owl:Class ; rdfs:label "numeric attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1000547, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1003174 obo:IAO_0000115 "The maximum value for this attribute"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003174"^^xsd:string ; a owl:Class ; rdfs:label "attribute maximum"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003171 ] . obo:MS_1003175 obo:IAO_0000115 "The minimum value for this attribute"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003175"^^xsd:string ; a owl:Class ; rdfs:label "attribute minimum"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003171 ] . obo:MS_1003176 obo:IAO_0000115 "The arithmetic mean value for this attribute"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003176"^^xsd:string ; a owl:Class ; rdfs:label "attribute mean"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003171 ] . obo:MS_1003177 obo:IAO_0000115 "The standard deviation (exact value of population, or estimate from sample) of this attribute"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003177"^^xsd:string ; a owl:Class ; rdfs:label "attribute standard deviation"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003171 ] . obo:MS_1003178 obo:IAO_0000115 "The coefficient of variation of this attribute, i.e. standard deviation divided by the mean"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003178"^^xsd:string ; a owl:Class ; rdfs:label "attribute coefficient of variation"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003171 ] . obo:MS_1003179 obo:IAO_0000115 "The most appropriate summary value of the attribute, usually but not necessarily the mean"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003179"^^xsd:string ; a owl:Class ; rdfs:label "attribute summary value"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003171 ] . obo:MS_1003180 obo:IAO_0000115 "The median of this attribute"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003180"^^xsd:string ; a owl:Class ; rdfs:label "attribute median"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003171 ] . obo:MS_1003181 obo:IAO_0000115 "Combination of two or more dissociation methods that are known by a special term."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003181"^^xsd:string ; a owl:Class ; rdfs:label "combined dissociation method"^^xsd:string ; rdfs:subClassOf obo:MS_1000044 . obo:MS_1003182 obo:IAO_0000115 "Dissociation process combining electron-transfer dissociation (ETD) and collision-induced dissociation (CID)."^^xsd:string ; oboInOwl:hasExactSynonym "ETciD"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003182"^^xsd:string ; a owl:Class ; rdfs:label "electron-transfer/collision-induced dissociation"^^xsd:string ; rdfs:subClassOf obo:MS_1003181 . obo:MS_1003183 obo:IAO_0000115 "Waters oa-ToF based Synapt XS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003183"^^xsd:string ; a owl:Class ; rdfs:label "Synapt XS"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1003184 obo:IAO_0000115 "Waters oa-ToF based SELECT SERIES Cyclic IMS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003184"^^xsd:string ; a owl:Class ; rdfs:label "SELECT SERIES Cyclic IMS"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1003185 obo:IAO_0000115 "Waters oa-ToF based SELECT SERIES MRT."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003185"^^xsd:string ; a owl:Class ; rdfs:label "SELECT SERIES MRT"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1003186 obo:IAO_0000115 "Version number of the [PSI] library format specification"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003186"^^xsd:string ; a owl:Class ; rdfs:label "library format version"^^xsd:string ; rdfs:subClassOf obo:MS_1003171, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003187 obo:IAO_0000115 "Short identifier for the library for easy reference, preferably but not necessarily globally unique"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003187"^^xsd:string ; a owl:Class ; rdfs:label "library identifier"^^xsd:string ; rdfs:subClassOf obo:MS_1003171, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003188 obo:IAO_0000115 "A short name identifying the library to potential users. The same name may refer to multiple versions of the same continually updated library."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003188"^^xsd:string ; a owl:Class ; rdfs:label "library name"^^xsd:string ; rdfs:subClassOf obo:MS_1003171, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003189 obo:IAO_0000115 "Extended free-text description of the library"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003189"^^xsd:string ; a owl:Class ; rdfs:label "library description"^^xsd:string ; rdfs:subClassOf obo:MS_1003171, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003190 obo:IAO_0000115 "Version number of the library, usually refering to a certain release of a continually updated library "^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003190"^^xsd:string ; a owl:Class ; rdfs:label "library version"^^xsd:string ; rdfs:subClassOf obo:MS_1003171, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003191 obo:IAO_0000115 "URI or URL that uniquely identifies the library"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003191"^^xsd:string ; a owl:Class ; rdfs:label "library URI"^^xsd:string ; rdfs:subClassOf obo:MS_1003171, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003192 obo:IAO_0000115 "A spectrum deliberately introduced into a spectral library that necessarily produces incorrect identifications when matched, for the purpose of error control in spectral library searching"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003192"^^xsd:string ; a owl:Class ; rdfs:label "decoy spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1003072 . obo:MS_1003193 obo:IAO_0000115 "A decoy spectrum generated from a real spectrum, by shuffling the amino acid sequence of the identification of the real spectrum, followed by re-positioning annotated peaks to match the shuffled sequence."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003193"^^xsd:string ; a owl:Class ; rdfs:label "shuffle-and-reposition decoy spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1003192 . obo:MS_1003194 obo:IAO_0000115 "A decoy spectrum generated from a real spectrum, by changing the precursor m/z value of the real spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003194"^^xsd:string ; a owl:Class ; rdfs:label "precursor shift decoy spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1003192 . obo:MS_1003195 obo:IAO_0000115 "A decoy spectrum that is either a real spectrum of an unnatural peptidoform (e.g. a synthetic peptide that cannot be found in nature), or an artificial spectrum predicted for such unnatural peptidoform"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003195"^^xsd:string ; a owl:Class ; rdfs:label "unnatural peptidoform decoy spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1003192 . obo:MS_1003196 obo:IAO_0000115 "A decoy spectrum that is a real spectrum of a naturally occuring peptidoform of an unrelated species that should not be found in the sample"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003196"^^xsd:string ; a owl:Class ; rdfs:label "unrelated species decoy spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1003192 . obo:MS_1003197 obo:IAO_0000115 "URI of the license controlling use of the library (e.g. https://creativecommons.org/publicdomain/zero/1.0/)"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003197"^^xsd:string ; a owl:Class ; rdfs:label "license URI"^^xsd:string ; rdfs:subClassOf obo:MS_1003171, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003198 obo:IAO_0000115 "Notice of statutorily prescribed form that informs users of the underlying claim to copyright ownership in a published work"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003198"^^xsd:string ; a owl:Class ; rdfs:label "copyright notice"^^xsd:string ; rdfs:subClassOf obo:MS_1003171, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003199 obo:IAO_0000115 "Extended free-text description of the difference from the previous version"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003199"^^xsd:string ; a owl:Class ; rdfs:label "change log"^^xsd:string ; rdfs:subClassOf obo:MS_1003171, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003200 obo:IAO_0000115 "Version number of the software package used for library creation"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003200"^^xsd:string ; a owl:Class ; rdfs:label "software version"^^xsd:string ; rdfs:subClassOf obo:MS_1003171, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003201 obo:IAO_0000115 "Abstract term containing several different types of provenance information"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003201"^^xsd:string ; a owl:Class ; rdfs:label "library provenance attribute"^^xsd:string ; rdfs:subClassOf obo:MS_1003171 . obo:MS_1003202 obo:IAO_0000115 "A suite of software tools for creating and searching MS/MS peptide spectrum libraries, developed at the University of Washington"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003202"^^xsd:string ; a owl:Class ; rdfs:label "BiblioSpec"^^xsd:string ; rdfs:subClassOf obo:MS_1001456, obo:MS_1003207 . obo:MS_1003203 obo:IAO_0000115 "Spectrum data file from which (at least) a subset of spectra were extracted from. Should use USI notation mzspec:PXDxxxx:msRunName if possible, or a URI if USI notation is not possible."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003203"^^xsd:string ; a owl:Class ; rdfs:label "constituent spectrum file"^^xsd:string ; rdfs:subClassOf obo:MS_1003201, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003204 obo:IAO_0000115 "Identification file where (at least) a subset of identifications were extracted from. Should use a URI if possible"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003204"^^xsd:string ; a owl:Class ; rdfs:label "constituent identification file"^^xsd:string ; rdfs:subClassOf obo:MS_1003201, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003205 obo:IAO_0000115 "Source library URI which(at least) a subset of spectra were extracted from."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003205"^^xsd:string ; a owl:Class ; rdfs:label "constituent library file"^^xsd:string ; rdfs:subClassOf obo:MS_1003201, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003206 obo:IAO_0000115 """String of logging information generated when the library was constructed from its constituent files. Multiple lines should be separated with escaped """^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003206"^^xsd:string ; a owl:Class ; rdfs:label "library creation log"^^xsd:string ; rdfs:subClassOf obo:MS_1003201, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003207 obo:IAO_0000115 "Library creation software"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003207"^^xsd:string ; a owl:Class ; rdfs:label "library creation software"^^xsd:string ; rdfs:subClassOf obo:MS_1000531, obo:MS_1003171 . obo:MS_1003208 obo:IAO_0000115 "The measured or inferred m/z (as reported by the mass spectrometer acquisition software or post-processing software) of the monoisotopic peak of the precursor ion based on the MSn-1 spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003208"^^xsd:string ; a owl:Class ; rdfs:label "experimental precursor monoisotopic m/z"^^xsd:string ; rdfs:subClassOf obo:MS_1000455, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1003209 obo:IAO_0000115 "The measured monoisotopic m/z (as reported by the mass spectrometer acquisition software or post-processing software) minus the theoretical monoisotopic m/z of the analyte assigned to the spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003209"^^xsd:string ; a owl:Class ; rdfs:label "monoisotopic m/z deviation"^^xsd:string ; rdfs:subClassOf obo:MS_1003078, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000169 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1003210 obo:IAO_0000115 "The measured average m/z (as reported by the mass spectrometer acquisition software or post-processing software) minus the theoretical average m/z of the analyte assigned to the spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003210"^^xsd:string ; a owl:Class ; rdfs:label "average m/z deviation"^^xsd:string ; rdfs:subClassOf obo:MS_1003078, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000169 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1003211 obo:IAO_0000115 "A set of spectrum-related attributes that is shared by a subset of spectra within the same spectral library"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003211"^^xsd:string ; a owl:Class ; rdfs:label "library spectrum attribute set"^^xsd:string ; rdfs:subClassOf obo:MS_1003171 . obo:MS_1003212 obo:IAO_0000115 "A name to refer to a library attribute set"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003212"^^xsd:string ; a owl:Class ; rdfs:label "library attribute set name"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003211 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003238 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003239 ] . obo:MS_1003213 obo:IAO_0000115 "Specific aspect of a mass spectrometer method by which mass ranges are selected and possibly dissociated."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003213"^^xsd:string ; a owl:Class ; rdfs:label "mass spectrometry acquisition method"^^xsd:string ; rdfs:subClassOf obo:MS_1000524, obo:MS_1001954 . obo:MS_1003214 obo:IAO_0000115 "Specific aspect of a mass spectrometer method by which mass ranges are selected and possibly dissociated."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003214"^^xsd:string ; a owl:Class ; rdfs:label "mass spectrometry acquisition method aspect"^^xsd:string ; rdfs:subClassOf obo:MS_1001458 . obo:MS_1003215 obo:IAO_0000115 "Mass spectrometer data acquisition method wherein mass selection for fragmentation is configured according to a pre-determined program, rather than based on any detected precursor ions."^^xsd:string ; oboInOwl:hasExactSynonym "DIA"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003215"^^xsd:string ; a owl:Class ; rdfs:label "data-independent acquisition"^^xsd:string ; rdfs:subClassOf obo:MS_1003214 . obo:MS_1003216 obo:IAO_0000115 "Mass spectrometer data acquisition method wherein all precursor ions of which the instrument is capable are fragmented at once.."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003216"^^xsd:string ; a owl:Class ; rdfs:label "dissociation of full mass range"^^xsd:string ; rdfs:subClassOf obo:MS_1003214 . obo:MS_1003217 obo:IAO_0000115 "Mass spectrometer data acquisition method wherein ????."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003217"^^xsd:string ; a owl:Class ; rdfs:label "dissociation of scanning quadrupole across a specified mass range"^^xsd:string ; rdfs:subClassOf obo:MS_1003214 . obo:MS_1003218 obo:IAO_0000115 "Mass spectrometer data acquisition method wherein a series of limited mass range fragmentation selection windows are preconfigured."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003218"^^xsd:string ; a owl:Class ; rdfs:label "dissociation of sequential mass ranges"^^xsd:string ; rdfs:subClassOf obo:MS_1003214 . obo:MS_1003219 obo:IAO_0000115 "Mass spectrometer data acquisition method wherein precursor ions are separated by their ion mobility properties prior to measurement."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003219"^^xsd:string ; a owl:Class ; rdfs:label "ion mobility separation"^^xsd:string ; rdfs:subClassOf obo:MS_1003214 . obo:MS_1003220 obo:IAO_0000115 "Data processing action of merging of the measurements of potentially multiple adducts into a single representation that is independent of the small ion that adds charge to a larger molecule."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003220"^^xsd:string ; a owl:Class ; rdfs:label "adduct deconvolution"^^xsd:string ; rdfs:subClassOf obo:MS_1000543 . obo:MS_1003221 obo:IAO_0000115 "Mass spectrometer data acquisition method wherein MSn spectra are triggered based on the m/z of precursor ions detected in the same run."^^xsd:string ; oboInOwl:hasExactSynonym "DDA"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003221"^^xsd:string ; a owl:Class ; rdfs:label "data-dependent acquisition"^^xsd:string ; rdfs:subClassOf obo:MS_1003214 . obo:MS_1003222 obo:IAO_0000115 "Data processing action of merging multiple ion peaks acquired at different ion mobility steps into a single mass spectrum representing a single analyte."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003222"^^xsd:string ; a owl:Class ; rdfs:label "ion mobility deconvolution"^^xsd:string ; rdfs:subClassOf obo:MS_1000543 . obo:MS_1003224 obo:IAO_0000115 "Data independent mass spectrometer acquisition method wherein a preconfigured sequence of mass ranges are fragmented. Examples of such an approach include SWATH-MS, FT-ARM, HRM, and PAcIFIC."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003224"^^xsd:string ; a owl:Class ; rdfs:label "data independent acquisition from dissociation of sequential mass ranges"^^xsd:string ; rdfs:subClassOf obo:MS_1003213, obo:MS_1003215, obo:MS_1003218 . obo:MS_1003225 obo:IAO_0000115 "Data independent mass spectrometer acquisition method wherein a preconfigured sequence of mass ranges are fragmented after being separated by ion mobility. An example of such an approach is Bruker diaPASEF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003225"^^xsd:string ; a owl:Class ; rdfs:label "data independent acquisition from dissociation of sequential mass ranges after ion mobility separation"^^xsd:string ; rdfs:subClassOf obo:MS_1003213, obo:MS_1003215, obo:MS_1003218, obo:MS_1003219 . obo:MS_1003226 obo:IAO_0000115 "Data independent mass spectrometer acquisition method wherein the full mass range is fragmented after being separated by ion mobility. Examples of such an approach include HDMS^E and IMS-AIF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003226"^^xsd:string ; a owl:Class ; rdfs:label "data independent acquisition from dissociation of full mass range after ion mobility separation"^^xsd:string ; rdfs:subClassOf obo:MS_1003213, obo:MS_1003215, obo:MS_1003216, obo:MS_1003219 . obo:MS_1003227 obo:IAO_0000115 "Data independent mass spectrometer acquisition method wherein the full mass range is fragmented. Examples of such an approach include MS^E, AIF, and bbCID."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003227"^^xsd:string ; a owl:Class ; rdfs:label "data independent acquisition from dissociation of full mass range"^^xsd:string ; rdfs:subClassOf obo:MS_1003213, obo:MS_1003215, obo:MS_1003216, obo:MS_1003219 . obo:MS_1003228 obo:IAO_0000115 "Data independent mass spectrometer acquisition method wherein ???. An example of such an approach is Waters SONAR."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003228"^^xsd:string ; a owl:Class ; rdfs:label "data independent acquisition from dissociation of scanning quadrupole across mass range"^^xsd:string ; rdfs:subClassOf obo:MS_1003213, obo:MS_1003215, obo:MS_1003217 . obo:MS_1003229 obo:IAO_0000115 "Bruker Daltonics' timsTOF."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003229"^^xsd:string ; a owl:Class ; rdfs:label "timsTOF"^^xsd:string ; rdfs:subClassOf obo:MS_1003123 . obo:MS_1003230 obo:IAO_0000115 "Bruker Daltonics' timsTOF Pro 2."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003230"^^xsd:string ; a owl:Class ; rdfs:label "timsTOF Pro 2"^^xsd:string ; rdfs:subClassOf obo:MS_1003123 . obo:MS_1003231 obo:IAO_0000115 "Bruker Daltonics' timsTOF SCP."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003231"^^xsd:string ; a owl:Class ; rdfs:label "timsTOF SCP"^^xsd:string ; rdfs:subClassOf obo:MS_1003123 . obo:MS_1003232 obo:IAO_0000115 "comprehensive infrastructure to organize, curate and share a multi- instrument spectral library for metabolomics data annotation developed and distributed by the French National infrastructure in metabolomics and fluxomics (MetaboHUB)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003232"^^xsd:string ; a owl:Class ; rdfs:label "PeakForest"^^xsd:string ; rdfs:subClassOf obo:MS_1001456, obo:MS_1002878, obo:MS_1003207 . obo:MS_1003234 obo:IAO_0000115 "An attribute that describes information about an entry in a spectral library"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003234"^^xsd:string ; a owl:Class ; rdfs:label "library spectrum attribute"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003172 ] . obo:MS_1003235 obo:IAO_0000115 "The ionization of analytes from a piece of paper by applying a solvent and voltage."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003235"^^xsd:string ; a owl:Class ; rdfs:label "paper spray ionization"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1003237 obo:IAO_0000115 "An ordinal number uniquely identifying a spectrum in a library. Library spectrum keys should start at 1. Library spectrum keys SHOULD not change if entries are re-ordered or removed from a library."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003237"^^xsd:string ; a owl:Class ; rdfs:label "library spectrum key"^^xsd:string ; rdfs:subClassOf obo:MS_1003234, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1003238 obo:IAO_0000115 "A set of analyte-related attributes that is shared by a subset of spectra within the same spectral library"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003238"^^xsd:string ; a owl:Class ; rdfs:label "library analyte attribute set"^^xsd:string ; rdfs:subClassOf obo:MS_1003171 . obo:MS_1003239 obo:IAO_0000115 "A set of interpretation-related attributes that is shared by a subset of spectra within the same spectral library"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003239"^^xsd:string ; a owl:Class ; rdfs:label "library interpretation attribute set"^^xsd:string ; rdfs:subClassOf obo:MS_1003171 . obo:MS_1003240 obo:IAO_0000115 "A mathematical transformation applied to peak intensities, for example, as a way to modify the weight put on each peak when computing spectral match scores"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003240"^^xsd:string ; a owl:Class ; rdfs:label "peak intensity transform"^^xsd:string ; rdfs:subClassOf obo:MS_1000543 . obo:MS_1003241 obo:IAO_0000115 "A mathematical transformation applied to peak intensities, in which peak intensities are replaced by their square roots"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003241"^^xsd:string ; a owl:Class ; rdfs:label "square root transform"^^xsd:string ; rdfs:subClassOf obo:MS_1003240 . obo:MS_1003242 obo:IAO_0000115 "A mathematical transformation applied to peak intensities, in which peak intensities are replaced by their ranks"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003242"^^xsd:string ; a owl:Class ; rdfs:label "rank transform"^^xsd:string ; rdfs:subClassOf obo:MS_1003240 . obo:MS_1003243 obo:IAO_0000115 "The theoretical mass of the adduct ion (e.g. for a singly-charged protonated peptide ion, this value would be the neutral peptide molecule’s mass plus the mass of a proton)"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003243"^^xsd:string ; a owl:Class ; rdfs:label "adduct ion mass"^^xsd:string ; rdfs:subClassOf obo:MS_1003056, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_1003244 obo:IAO_0000115 "Accession number (e.g. in PeptideAtlas) of the peptide sequence"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003244"^^xsd:string ; a owl:Class ; rdfs:label "peptide accession number"^^xsd:string ; rdfs:subClassOf obo:MS_1003050, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003245 obo:IAO_0000115 "Thermo Scientific Q Exactive UHMR (Ultra High Mass Range) Hybrid Quadrupole Orbitrap MS."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003245"^^xsd:string ; a owl:Class ; rdfs:label "Q Exactive UHMR"^^xsd:string ; rdfs:subClassOf obo:MS_1000494 . obo:MS_1003246 obo:IAO_0000115 "Multiphoton ionization where the reactant ion dissociates as a result of the absorption of multiple UV photons."^^xsd:string ; oboInOwl:hasExactSynonym "UVPD"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003246"^^xsd:string ; a owl:Class ; rdfs:label "ultraviolet photodissociation"^^xsd:string ; rdfs:subClassOf obo:MS_1000435 . obo:MS_1003247 obo:IAO_0000115 "A process to fragment ions in a mass spectrometer by inducing fragmentation of anions (e.g. peptides or proteins) by transferring electrons to a radical-cation."^^xsd:string ; oboInOwl:hasExactSynonym "NETD"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003247"^^xsd:string ; a owl:Class ; rdfs:label "negative electron transfer dissociation"^^xsd:string ; rdfs:subClassOf obo:MS_1000044 . obo:MS_1003248 obo:IAO_0000115 "Process to transfer a proton from a hydronium ion (H3O+) to neutral analyte, leading to a protonated analyte, which typically does not lead to fragmentation."^^xsd:string ; oboInOwl:hasExactSynonym "PTR"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003248"^^xsd:string ; a owl:Class ; rdfs:label "proton transfer reaction"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1003249 obo:IAO_0000115 "Process to transfer one or more protons from a multiply charged cation (peptide or protein ion) to a proton acceptor anion or neutral basic compound, thereby reducing the charge of the original analyte."^^xsd:string ; oboInOwl:hasExactSynonym "PTCR"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003249"^^xsd:string ; a owl:Class ; rdfs:label "proton transfer charge reduction"^^xsd:string ; rdfs:subClassOf obo:MS_1000008 . obo:MS_1003250 obo:IAO_0000115 "The number of peptidoforms that pass the threshold to be considered identified with sufficient confidence."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003250"^^xsd:string ; a owl:Class ; rdfs:label "count of identified peptidoforms"^^xsd:string ; rdfs:subClassOf obo:MS_1002702, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1003251 obo:IAO_0000115 "The number of spectra that pass the threshold to be considered identified with sufficient confidence."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003251"^^xsd:string ; a owl:Class ; rdfs:label "count of identified spectra"^^xsd:string ; rdfs:subClassOf obo:MS_1002700, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_1003252 obo:IAO_0000115 "Waters Corporation Xevo G2-XS QTof quadrupole time-of-flight mass spectrometer."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003252"^^xsd:string ; a owl:Class ; rdfs:label "Xevo G2-XS QTof"^^xsd:string ; rdfs:subClassOf obo:MS_1000126 . obo:MS_1003253 obo:IAO_0000115 "A universal software for data-independent acquisition (DIA) proteomics data processing"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003253"^^xsd:string ; a owl:Class ; rdfs:label "DIA-NN"^^xsd:string ; rdfs:subClassOf obo:MS_1001139, obo:MS_1001456 . obo:MS_1003254 obo:IAO_0000115 "An attribute of a peak in a mass spectrum other than its m/z, intensity, and annotation. "^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003254"^^xsd:string ; a owl:Class ; rdfs:label "peak attribute"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000231 ] . obo:MS_1003255 obo:IAO_0000115 "For a de-charged spectrum, the original charge state of the ion observed in a mass spectrum determined by charge deconvolution. "^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003255"^^xsd:string ; a owl:Class ; rdfs:label "pre-decharged charge state"^^xsd:string ; rdfs:subClassOf obo:MS_1003254 . obo:MS_1003256 obo:IAO_0000115 "Non-inherent characteristic attributed to a peptidoform"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003256"^^xsd:string ; a owl:Class ; rdfs:label "peptidoform ion attribute"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003051 ] . obo:MS_1003257 obo:IAO_0000115 "A link from one spectrum to another spectrum of interest "^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003257"^^xsd:string ; a owl:Class ; rdfs:label "library spectrum cross reference"^^xsd:string ; rdfs:subClassOf obo:MS_1003234 . obo:MS_1003258 obo:IAO_0000115 "A cross reference to another spectrum that has some relationship with this one, but is not necessarily spectrally similar. "^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003258"^^xsd:string ; a owl:Class ; rdfs:label "related spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1003257 . obo:MS_1003259 obo:IAO_0000115 "A list of cross references to a related spectrum in the same library, in the form of the library spectrum key. "^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003259"^^xsd:string ; a owl:Class ; rdfs:label "related spectrum keys"^^xsd:string ; rdfs:subClassOf obo:MS_1003258, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002712 ] . obo:MS_1003260 obo:IAO_0000115 "A cross reference to a related spectrum in the form of a PSI Universal Spectrum Identifier"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003260"^^xsd:string ; a owl:Class ; rdfs:label "related spectrum USI"^^xsd:string ; rdfs:subClassOf obo:MS_1003258, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003261 obo:IAO_0000115 "A free-text string describing the related spectrum and/or its relationship to this spectrum"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003261"^^xsd:string ; a owl:Class ; rdfs:label "related spectrum description"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003258 ] . obo:MS_1003262 obo:IAO_0000115 "A cross reference to another spectrum that has high spectral similarity with this one, usually assumed to originate from the same analyte ion."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003262"^^xsd:string ; a owl:Class ; rdfs:label "similar spectrum"^^xsd:string ; rdfs:subClassOf obo:MS_1003257 . obo:MS_1003263 obo:IAO_0000115 "A list of cross references to a similar spectrum in the same library, in the form of the library spectrum key. "^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003263"^^xsd:string ; a owl:Class ; rdfs:label "similar spectrum keys"^^xsd:string ; rdfs:subClassOf obo:MS_1003262, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002712 ] . obo:MS_1003264 obo:IAO_0000115 "A cross reference to a similar spectrum in the form of a PSI Universal Spectrum Identifier"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003264"^^xsd:string ; a owl:Class ; rdfs:label "similar spectrum USI"^^xsd:string ; rdfs:subClassOf obo:MS_1003262, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003265 obo:IAO_0000115 "A group of spectra that are spectrally similar to each other"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003265"^^xsd:string ; a owl:Class ; rdfs:label "spectrum cluster"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003170 ] . obo:MS_1003266 obo:IAO_0000115 "A non-inherent characteristic of a spectrum cluster"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003266"^^xsd:string ; a owl:Class ; rdfs:label "spectrum cluster attribute"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003265 ] . obo:MS_1003267 obo:IAO_0000115 "An ordinal number uniquely identifying a spectrum cluster. It should start with 1."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003267"^^xsd:string ; a owl:Class ; rdfs:label "spectrum cluster key"^^xsd:string ; rdfs:subClassOf obo:MS_1003266, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:MS_1003268 obo:IAO_0000115 "A list of integers corresponding to the library spectrum keys of the members of this cluster. These members must be in the same library."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003268"^^xsd:string ; a owl:Class ; rdfs:label "spectrum cluster member spectrum keys"^^xsd:string ; rdfs:subClassOf obo:MS_1003266, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1002712 ] . obo:MS_1003269 obo:IAO_0000115 "A member of this cluster external to the library, specified using a PSI Universal Spectrum Identifier "^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003269"^^xsd:string ; a owl:Class ; rdfs:label "spectrum cluster member USI"^^xsd:string ; rdfs:subClassOf obo:MS_1003266, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_1003270 obo:IAO_0000115 "A string describing the peptidoform ion using the PSI ProForma notation, which should include the charge state, and optionally the adduct type. "^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:1003270"^^xsd:string ; a owl:Class ; rdfs:label "proforma peptidoform ion notation"^^xsd:string ; rdfs:subClassOf obo:MS_1003256 . obo:MS_4000000 obo:IAO_0000115 "PSI Quality Control controlled vocabulary term."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000000"^^xsd:string ; a owl:Class ; rdfs:label "PSI-MS CV Quality Control Vocabulary"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_0000000 ] . obo:MS_4000001 obo:IAO_0000115 "Parent term for QC metrics, each metric MUST have this as an ancestor in its is_a relations."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000001"^^xsd:string ; a owl:Class ; rdfs:label "QC metric"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000000 ] . obo:MS_4000002 obo:IAO_0000115 "The QC metric type describes what type the corresponding metric is. Possible types are single value, n-tuple, table, or matrix."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000002"^^xsd:string ; a owl:Class ; rdfs:label "QC metric value type"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000000 ] . obo:MS_4000003 obo:IAO_0000115 "Metrics consisting of a single value. The value must have a unit (e.g. UO:0000221 ! dalton or UO:0000187 ! percent), and optionally a type (e.g. STATO:0000574 ! median or MS:1002354 ! PSM-level q-value)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000003"^^xsd:string ; a owl:Class ; rdfs:label "single value"^^xsd:string ; rdfs:subClassOf obo:MS_4000002 . obo:MS_4000004 obo:IAO_0000115 "Metrics consisting of multiple values, with the number of values implicitly specified by length of the JSON array (e.g. length 4 for quartiles). All values must be given a unit (e.g. UO:0000221 ! dalton or UO:0000187 ! percent), and optionally a type (e.g. STATO:0000574 ! median or MS:1002354 ! PSM-level q-value). All values in the tuple must have the same unit and type (if applicable)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000004"^^xsd:string ; a owl:Class ; rdfs:label "n-tuple"^^xsd:string ; rdfs:subClassOf obo:MS_4000002 . obo:MS_4000005 obo:IAO_0000115 "Metrics consisting of a table or data frame. The values of the table may have different types in each column (in contrast to a matrix). Each column must have a unit (identical for all entries of this column) and may have a value type (e.g. STATO:0000574 ! median or MS:1002354 ! PSM-level q-value)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000005"^^xsd:string ; a owl:Class ; rdfs:comment "The actual structure of the table is defined in the mzQC specification document. In short: it must have at least one column, and MAY have optional columns."^^xsd:string ; rdfs:label "table"^^xsd:string ; rdfs:subClassOf obo:MS_4000002 . obo:MS_4000006 obo:IAO_0000115 "A matrix is a rectangular array of values of the same type (in contrast to a table). All values must be given a unit (e.g. UO:0000221 ! dalton or UO:0000187 ! percent), and optionally a type (e.g. STATO:0000574 ! median or MS:1002354 ! PSM-level q-value). All values in the matrix must have the same unit and type (if applicable)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000006"^^xsd:string ; a owl:Class ; rdfs:comment "The actual structure of the matrix is defined in the mzQC specification document."^^xsd:string ; rdfs:label "matrix"^^xsd:string ; rdfs:subClassOf obo:MS_4000002 . obo:MS_4000007 obo:IAO_0000115 "Categorization of the QC metric."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000007"^^xsd:string ; a owl:Class ; rdfs:label "QC metric category"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000000 ] . obo:MS_4000008 obo:IAO_0000115 "QC metric based on identification results."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000008"^^xsd:string ; a owl:Class ; rdfs:label "ID based metric"^^xsd:string ; rdfs:subClassOf obo:MS_4000007 . obo:MS_4000009 obo:IAO_0000115 "QC metric not based on identification results."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000009"^^xsd:string ; a owl:Class ; rdfs:label "ID free metric"^^xsd:string ; rdfs:subClassOf obo:MS_4000007 . obo:MS_4000010 obo:IAO_0000115 "QC metric based on quantification results."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000010"^^xsd:string ; a owl:Class ; rdfs:label "quantification based metric"^^xsd:string ; rdfs:subClassOf obo:MS_4000007 . obo:MS_4000012 obo:IAO_0000115 "QC metric calculated from a single run (e.g. one .raw file)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000012"^^xsd:string ; a owl:Class ; rdfs:label "single run based metric"^^xsd:string ; rdfs:subClassOf obo:MS_4000007 . obo:MS_4000013 obo:IAO_0000115 "QC metric calculated from multiple runs (e.g. multiple .raw files)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000013"^^xsd:string ; a owl:Class ; rdfs:label "multiple runs based metric"^^xsd:string ; rdfs:subClassOf obo:MS_4000007 . obo:MS_4000014 obo:IAO_0000115 "QC metric calculated from a single spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000014"^^xsd:string ; a owl:Class ; rdfs:label "single spectrum based metric"^^xsd:string ; rdfs:subClassOf obo:MS_4000007 . obo:MS_4000015 obo:IAO_0000115 "QC metric calculated from multiple spectra."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000015"^^xsd:string ; a owl:Class ; rdfs:label "multiple spectra based metric"^^xsd:string ; rdfs:subClassOf obo:MS_4000007 . obo:MS_4000016 obo:IAO_0000115 "QC metric related to retention time."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000016"^^xsd:string ; a owl:Class ; rdfs:label "retention time metric"^^xsd:string ; rdfs:subClassOf obo:MS_4000001 . obo:MS_4000017 obo:IAO_0000115 "QC metric related to a chromatogram."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000017"^^xsd:string ; a owl:Class ; rdfs:label "chromatogram metric"^^xsd:string ; rdfs:subClassOf obo:MS_4000001 . obo:MS_4000018 obo:IAO_0000115 "QC metric related to an extracted ion chromatogram."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000018"^^xsd:string ; a owl:Class ; rdfs:label "XIC metric"^^xsd:string ; rdfs:subClassOf obo:MS_4000017 . obo:MS_4000019 obo:IAO_0000115 "QC metric related to the mass spectrometry acquisition."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000019"^^xsd:string ; a owl:Class ; rdfs:label "MS metric"^^xsd:string ; rdfs:subClassOf obo:MS_4000001 . obo:MS_4000020 obo:IAO_0000115 "QC metric related to events in the ion source."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000020"^^xsd:string ; a owl:Class ; rdfs:label "ion source metric"^^xsd:string ; rdfs:subClassOf obo:MS_4000019 . obo:MS_4000021 obo:IAO_0000115 "QC metric based on MS1 events."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000021"^^xsd:string ; a owl:Class ; rdfs:label "MS1 metric"^^xsd:string ; rdfs:subClassOf obo:MS_4000019 . obo:MS_4000022 obo:IAO_0000115 "QC metric based on MS2 events."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000022"^^xsd:string ; a owl:Class ; rdfs:label "MS2 metric"^^xsd:string ; rdfs:subClassOf obo:MS_4000019 . obo:MS_4000023 obo:IAO_0000115 "QC metric related to the sample preparation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000023"^^xsd:string ; a owl:Class ; rdfs:label "sample preparation metric"^^xsd:string ; rdfs:subClassOf obo:MS_4000001 . obo:MS_4000024 obo:IAO_0000115 "QC metric related to measurements of the ambient environment, such as the laboratory."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000024"^^xsd:string ; a owl:Class ; rdfs:label "environment metric"^^xsd:string ; rdfs:subClassOf obo:MS_4000001 . obo:MS_4000050 obo:IAO_0000115 "The number of XIC that account for the top half of all XIC-FWHM divided by the number of all XIC."^^xsd:string ; oboInOwl:hasExactSynonym "XIC-WideFrac"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000050"^^xsd:string ; a owl:Class ; rdfs:comment "This metric characterises the distribution of precursor peak widths, much as the N50 characterises contig sizes in genome assembly."^^xsd:string ; rdfs:label "XIC50 fraction"^^xsd:string ; rdfs:subClassOf obo:MS_4000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000009 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000191 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_4000051 obo:IAO_0000115 "The first to n-th quantile of peak widths for XICs. A metric's value triplet represents the related QuaMeter metrics of of XIC-FWHM-Q1,Q2,Q3."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "XIC-FWHM-Q1"^^xsd:string, "XIC-FWHM-Q2"^^xsd:string, "XIC-FWHM-Q3"^^xsd:string ; oboInOwl:id "MS:4000051"^^xsd:string ; a owl:Class ; rdfs:label "XIC-FWHM quantiles"^^xsd:string ; rdfs:subClassOf obo:MS_4000004, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000009 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000018 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000086 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:STATO_0000291 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_4000052 obo:IAO_0000115 "The log ratio of successive XIC height quartiles. The metric's value triplet represents the log ratios of XIC-height-Q2 to XIC-height-Q1, XIC-height-Q3 to XIC-height-Q2, XIC-height max to XIC-height-Q3."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "XIC-Height-Q2"^^xsd:string, "XIC-Height-Q3"^^xsd:string, "XIC-Height-Q4"^^xsd:string ; oboInOwl:id "MS:4000052"^^xsd:string ; a owl:Class ; rdfs:label "XIC-Height quartile ratios"^^xsd:string ; rdfs:subClassOf obo:MS_4000004, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000009 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000018 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:STATO_0000105 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000191 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_4000053 obo:IAO_0000115 "The retention time duration of the chromatography in seconds."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "RT-Duration"^^xsd:string ; oboInOwl:id "MS:4000053"^^xsd:string ; a owl:Class ; rdfs:label "chromatography duration"^^xsd:string ; rdfs:subClassOf obo:MS_4000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000009 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000016 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:NCIT_C25330 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_4000054 obo:IAO_0000115 "The interval when the respective quarter of the TIC accumulates divided by retention time duration."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "RT-TIC-Q1"^^xsd:string, "RT-TIC-Q2"^^xsd:string, "RT-TIC-Q3"^^xsd:string, "RT-TIC-Q4"^^xsd:string ; oboInOwl:id "MS:4000054"^^xsd:string ; a owl:Class ; rdfs:label "TIC quarters RT fraction"^^xsd:string ; rdfs:subClassOf obo:MS_4000004, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000009 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000016 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000017 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000191 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_4000055 obo:IAO_0000115 "The interval used for acquisition of the first, second, third, and fourth quarter of all MS1 events divided by retention time duration."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "RT-MS-Q1"^^xsd:string, "RT-MS-Q2"^^xsd:string, "RT-MS-Q3"^^xsd:string, "RT-MS-Q4"^^xsd:string ; oboInOwl:id "MS:4000055"^^xsd:string ; a owl:Class ; rdfs:label "MS1 quarter RT fraction"^^xsd:string ; rdfs:subClassOf obo:MS_4000004, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000009 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000016 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000021 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000191 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_4000056 obo:IAO_0000115 "The interval used for acquisition of the first, second, third, and fourth quarter of all MS2 events divided by retention time duration."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "RT-MSMS-Q1"^^xsd:string, "RT-MSMS-Q2"^^xsd:string, "RT-MSMS-Q3"^^xsd:string, "RT-MSMS-Q4"^^xsd:string ; oboInOwl:id "MS:4000056"^^xsd:string ; a owl:Class ; rdfs:label "MS2 quarter RT fraction"^^xsd:string ; rdfs:subClassOf obo:MS_4000004, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000009 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000016 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000022 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000191 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_4000057 obo:IAO_0000115 "The log ratios of successive TIC-change quartiles. The TIC changes are the list of MS1 total ion current (TIC) value changes from one to the next scan, produced when each MS1 TIC is subtracted from the preceding MS1 TIC. The metric's value triplet represents the log ratio of the TIC-change Q2 to Q1, Q3 to Q2, TIC-change-max to Q3"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "MS1-TIC-Change-Q2"^^xsd:string, "MS1-TIC-Change-Q3"^^xsd:string, "MS1-TIC-Change-Q4"^^xsd:string ; oboInOwl:id "MS:4000057"^^xsd:string ; a owl:Class ; rdfs:label "MS1 TIC-change quartile ratios"^^xsd:string ; rdfs:subClassOf obo:MS_4000004, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000009 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000017 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000021 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:STATO_0000105 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_4000058 obo:IAO_0000115 "The log ratios of successive TIC quartiles. The metric's value triplet represents the log ratios of TIC-Q2 to TIC-Q1, TIC-Q3 to TIC-Q2, TIC-max to TIC-Q3."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "MS1-TIC-Q2"^^xsd:string, "MS1-TIC-Q3"^^xsd:string, "MS1-TIC-Q4"^^xsd:string ; oboInOwl:id "MS:4000058"^^xsd:string ; a owl:Class ; rdfs:label "MS1 TIC quartile ratios"^^xsd:string ; rdfs:subClassOf obo:MS_4000004, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000009 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000017 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000021 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:STATO_0000105 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_4000059 obo:IAO_0000115 "The number of MS1 events in the run."^^xsd:string ; oboInOwl:hasExactSynonym "MS1-Count"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000059"^^xsd:string ; a owl:Class ; rdfs:label "number of MS1 spectra"^^xsd:string ; rdfs:subClassOf obo:MS_4000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000009 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000021 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000189 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_4000060 obo:IAO_0000115 "The number of MS2 events in the run."^^xsd:string ; oboInOwl:hasExactSynonym "MS2-Count"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000060"^^xsd:string ; a owl:Class ; rdfs:label "number of MS2 spectra"^^xsd:string ; rdfs:subClassOf obo:MS_4000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000009 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000022 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000189 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_4000061 obo:IAO_0000115 "The first to n-th quantile of MS1 peak density (scan peak counts). A value triplet represents the original QuaMeter metrics, the quartiles of MS1 density. The number of values in the tuple implies the quantile mode."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "MS1-Density-Q1"^^xsd:string, "MS1-Density-Q2"^^xsd:string, "MS1-Density-Q3"^^xsd:string ; oboInOwl:id "MS:4000061"^^xsd:string ; a owl:Class ; rdfs:label "MS1 density quantiles"^^xsd:string ; rdfs:subClassOf obo:MS_4000004, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000009 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000021 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000189 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:NCIT_C45781 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_4000062 obo:IAO_0000115 "The first to n-th quantile of MS2 peak density (scan peak counts). A value triplet represents the original QuaMeter metrics, the quartiles of MS2 density. The number of values in the tuple implies the quantile mode."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "MS2-Density-Q1"^^xsd:string, "MS2-Density-Q2"^^xsd:string, "MS2-Density-Q3"^^xsd:string ; oboInOwl:id "MS:4000062"^^xsd:string ; a owl:Class ; rdfs:label "MS2 density quantiles"^^xsd:string ; rdfs:subClassOf obo:MS_4000004, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000009 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000022 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000189 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:NCIT_C45781 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_4000063 obo:IAO_0000115 "The fraction of MS/MS precursors of the corresponding charge. The fractions [0,1] are given in the 'Fraction' column, corresponding charges in the 'Charge state' column. The highest charge state is to be interpreted as that charge state or higher."^^xsd:string ; oboInOwl:hasNarrowSynonym "MS2-PrecZ-1"^^xsd:string, "MS2-PrecZ-2"^^xsd:string, "MS2-PrecZ-3"^^xsd:string, "MS2-PrecZ-4"^^xsd:string, "MS2-PrecZ-5"^^xsd:string, "MS2-PrecZ-more"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "IS-3A"^^xsd:string, "IS-3B"^^xsd:string, "IS-3C"^^xsd:string ; oboInOwl:id "MS:4000063"^^xsd:string ; a owl:Class ; rdfs:comment "the MS2-PrecZ metrics can be directly read from the table respective table rows, the ratios of IS-3 metrics must be derived from the respective table rows, IS-3A as ratio of +1 over +2, IS-3B as ratio of +3 over +2, IS-3C as +4 over +2."^^xsd:string ; rdfs:label "MS2 known precursor charges fractions"^^xsd:string ; rdfs:subClassOf obo:MS_4000005, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000041 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000191 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000009 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000020 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000022 ] . obo:MS_4000064 obo:IAO_0000115 "The fractions of inferred charge state of MS/MS precursors. The fractions [0,1] are given in the 'Fraction' column, corresponding charges in the 'Charge state' column. Charge 0 represents unknown charge states."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:hasRelatedSynonym "MS2-PrecZ-likely-1"^^xsd:string, "MS2-PrecZ-likely-multi"^^xsd:string ; oboInOwl:id "MS:4000064"^^xsd:string ; a owl:Class ; rdfs:label "MS2 unknown and likely precursor charges fractions"^^xsd:string ; rdfs:subClassOf obo:MS_4000005, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000041 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000191 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000009 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000020 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000022 ] . obo:MS_4000065 obo:IAO_0000115 "Fastest frequency for MS level 1 collection"^^xsd:string ; oboInOwl:hasExactSynonym "MS1-Freq-Max"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000065"^^xsd:string ; a owl:Class ; rdfs:comment "Spectrum acquisition frequency can be used to gauge the suitability of used instrument settings for the sample content used."^^xsd:string ; rdfs:label "fastest frequency for MS level 1 collection"^^xsd:string ; rdfs:subClassOf obo:MS_4000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000009 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000021 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000106 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_4000066 obo:IAO_0000115 "Fastest frequency for MS level 2 collection"^^xsd:string ; oboInOwl:hasExactSynonym "MS2-Freq-Max"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000066"^^xsd:string ; a owl:Class ; rdfs:comment "Spectrum acquisition frequency can be used to gauge the suitability of used instrument settings for the sample content used."^^xsd:string ; rdfs:label "fastest frequency for MS level 2 collection"^^xsd:string ; rdfs:subClassOf obo:MS_4000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000009 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000022 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000106 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_4000067 obo:IAO_0000115 "The duration of the mass spectrometry acquisition (as measured by the time between the last scan and first scan) in seconds."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000067"^^xsd:string ; a owl:Class ; rdfs:label "MS run duration"^^xsd:string ; rdfs:subClassOf obo:MS_4000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000009 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000019 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:NCIT_C25330 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_float ] . obo:MS_4000068 obo:IAO_0000115 "The minimal proportion of peaks needed to account for at least 50% of the total ion current in each individual spectrum considered, recorded in a mandatory fraction column. Either USI or native spectrum identifier columns must be present as well."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000068"^^xsd:string ; a owl:Class ; rdfs:label "spectra half-TIC"^^xsd:string ; rdfs:subClassOf obo:MS_4000005, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000191 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000009 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000022 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000767 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003063 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000285 ] . obo:MS_4000069 obo:IAO_0000115 "Upper and lower limit of m/z precursor values at which MSn spectra are recorded."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000069"^^xsd:string ; a owl:Class ; rdfs:label "m/z acquisition range"^^xsd:string ; rdfs:subClassOf obo:MS_4000004, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000009 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000019 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000040 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:STATO_0000035 ] . obo:MS_4000070 obo:IAO_0000115 "Upper and lower limit of retention time at which spectra are recorded."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000070"^^xsd:string ; a owl:Class ; rdfs:label "retention time acquisition range"^^xsd:string ; rdfs:subClassOf obo:MS_4000004, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000009 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000016 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000010 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:STATO_0000035 ] . obo:MS_4000071 obo:IAO_0000115 "The number of chromatograms recorded for the run."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000071"^^xsd:string ; a owl:Class ; rdfs:label "number of chromatograms"^^xsd:string ; rdfs:subClassOf obo:MS_4000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000009 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000012 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000017 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000189 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_4000072 obo:IAO_0000115 "Observed mass accuracy in ppm, calculated by 1E6 x (observed m/z - theoretical m/z)/theoretical m/z of a selected and identified ion in a mass spectrum."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000072"^^xsd:string ; a owl:Class ; rdfs:label "observed mass accuracy"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000008 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000014 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000022 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:UO_0000169 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1000014 ] . obo:MS_4000073 obo:IAO_0000115 "A QC metric based on a QC sample of known content."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000073"^^xsd:string ; a owl:Class ; rdfs:label "QC sample metric"^^xsd:string ; rdfs:subClassOf obo:MS_4000007 . obo:MS_4000074 obo:IAO_0000115 "A QC metric based on a QC sample of known and high complexity content."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000074"^^xsd:string ; a owl:Class ; rdfs:label "high complexity QC sample metric"^^xsd:string ; rdfs:subClassOf obo:MS_4000073 . obo:MS_4000075 obo:IAO_0000115 "A QC metric based on a QC sample of known and low complexity content."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000075"^^xsd:string ; a owl:Class ; rdfs:label "low complexity QC sample metric"^^xsd:string ; rdfs:subClassOf obo:MS_4000073 . obo:MS_4000076 obo:IAO_0000115 "A QC metric based on the results of a QC2 sample measurement. A QC2 sample is made from Pierce HeLa protein digest standard, see Pichler et al. Chiva et al. for details on QC sample design."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000076"^^xsd:string ; a owl:Class ; rdfs:comment "Expected peptides from QC2 sample measurement are: 'YAEAVTR','STLTDSLVC(Carbamidomethyl)K','SLADELALVDVLEDK','NPDDITNEEYGEFYK','LAVDEEENADNNTK','FEELNMDLFR','EAALSTALSEK','DDVAQTDLLQIDPNFGSK','RFPGYDSESK','EATTEFSVDAR','EQFLDGDGWTSR','TPAQFDADELR','LGDLYEEEMR','EVSTYIK','FAFQAEVNR'"^^xsd:string ; rdfs:label "QC2 sample metric"^^xsd:string ; rdfs:subClassOf obo:MS_4000074 . obo:MS_4000077 obo:IAO_0000115 "A QC metric based on the results of a QC1 sample measurement. A QC1 sample is made from trypsin-digested BSA MS Standard (CAM modified), see Pichler et al. Chiva et al. for details on QC sample design)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000077"^^xsd:string ; a owl:Class ; rdfs:comment "Expected peptides from QC1 sample measurement are: 'LVNELTEFAK','HLVDEPQNLIK','VPQVSTPTLVEVSR','EAC(Carbamidomethyl)FAVEGPK','EYEATLEEC(Carbamidomethyl)C(Carbamidomethyl)AK','EC(Carbamidomethyl)C(Carbamidomethyl)HGDLLEC(Carbamidomethyl)ADDR','SLHTLFGDELC(Carbamidomethyl)K','TC(Carbamidomethyl)VADESHAGC(Carbamidomethyl)EK','YIC(Carbamidomethyl)DNQDTISSK','NEC(Carbamidomethyl)FLSHK'"^^xsd:string ; rdfs:label "QC1 sample metric"^^xsd:string ; rdfs:subClassOf obo:MS_4000075 . obo:MS_4000078 obo:IAO_0000115 "Observed mass accuracy for the peptides of a QC2 sample measurement. The table should contain the peptides as described in the QC2 sample metric term, missing are interpreted as not detected."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000078"^^xsd:string ; a owl:Class ; rdfs:label "QC2 sample mass accuracies"^^xsd:string ; rdfs:subClassOf obo:MS_4000005, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003169 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000072 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000008 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000076 ] . obo:MS_4000079 obo:IAO_0000115 "Observed intensities for the peptides of a QC2 sample measurement within 5 ppm and +/- 240 s RT tolerance. Different metrics of observed intensities are possible, at least one must be present. The table should contain the peptides as defined in the parent QC2 sample metric term, missing are interpreted as not detected."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000079"^^xsd:string ; a owl:Class ; rdfs:label "QC2 sample intensities"^^xsd:string ; rdfs:subClassOf obo:MS_4000005, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003169 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000008 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000076 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001843 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001844 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001858 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1001859 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_1003085 ] . obo:MS_4000080 obo:IAO_0000115 "QC terms associated but not directly metrics themselves."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000080"^^xsd:string ; a owl:Class ; rdfs:label "QC non-metric term"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000000 ] . obo:MS_4000081 obo:IAO_0000115 "Data from the first principal component of a PCA."^^xsd:string ; oboInOwl:hasExactSynonym "1st PC"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000081"^^xsd:string ; a owl:Class ; rdfs:label "first principal component"^^xsd:string ; rdfs:subClassOf obo:MS_4000080, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:NCIT_C60694 ] . obo:MS_4000082 obo:IAO_0000115 "Data from the second principal component of a PCA."^^xsd:string ; oboInOwl:hasExactSynonym "2nd PC"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000082"^^xsd:string ; a owl:Class ; rdfs:label "second principal component"^^xsd:string ; rdfs:subClassOf obo:MS_4000080, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:NCIT_C60694 ] . obo:MS_4000083 obo:IAO_0000115 "Data from the third principal component of a PCA."^^xsd:string ; oboInOwl:hasExactSynonym "3rd PC"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000083"^^xsd:string ; a owl:Class ; rdfs:label "third principal component"^^xsd:string ; rdfs:subClassOf obo:MS_4000080, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:NCIT_C60694 ] . obo:MS_4000084 obo:IAO_0000115 "Data from the fourth principal component of a PCA."^^xsd:string ; oboInOwl:hasExactSynonym "4th PC"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000084"^^xsd:string ; a owl:Class ; rdfs:label "fourth principal component"^^xsd:string ; rdfs:subClassOf obo:MS_4000080, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:NCIT_C60694 ] . obo:MS_4000085 obo:IAO_0000115 "Data from the fifth principal component of a PCA."^^xsd:string ; oboInOwl:hasExactSynonym "5th PC"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000085"^^xsd:string ; a owl:Class ; rdfs:label "fifth principal component"^^xsd:string ; rdfs:subClassOf obo:MS_4000080, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:NCIT_C60694 ] . obo:MS_4000086 obo:IAO_0000115 "Used to refer to data elements of input sections in mzQC, either inputFile names or metadata labels."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000086"^^xsd:string ; a owl:Class ; rdfs:label "mzQC input reference"^^xsd:string ; rdfs:subClassOf obo:MS_4000080, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_4000087 obo:IAO_0000115 "Used to supply alternative labels for plotting figures."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000087"^^xsd:string ; a owl:Class ; rdfs:label "mzQC plot label"^^xsd:string ; rdfs:subClassOf obo:MS_4000080, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_4000088 obo:IAO_0000115 "Used to supply batch label information with any string value."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000088"^^xsd:string ; a owl:Class ; rdfs:label "batch label"^^xsd:string ; rdfs:subClassOf obo:MS_4000080, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:MS_4000089 obo:IAO_0000115 "Used to supply injection sequence information with consecutive whole numbers."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000089"^^xsd:string ; a owl:Class ; rdfs:label "injection sequence label"^^xsd:string ; rdfs:subClassOf obo:MS_4000080, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:MS_4000090 obo:IAO_0000115 "A table with the PCA results of MaxQuant's protein group raw intensities."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000090"^^xsd:string ; a owl:Class ; rdfs:label "principal component analysis of MaxQuant's protein group raw intensities"^^xsd:string ; rdfs:subClassOf obo:MS_4000005, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000081 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000086 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000008 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000013 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000021 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000082 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000083 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000084 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000085 ] . obo:MS_4000091 obo:IAO_0000115 "A table with the PCA results of MaxQuant's protein group lfq intensities."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000091"^^xsd:string ; a owl:Class ; rdfs:label "principal component analysis of MaxQuant's protein group lfq intensities"^^xsd:string ; rdfs:subClassOf obo:MS_4000005, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000081 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000086 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000008 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000013 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000021 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000082 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000083 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000084 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000085 ] . obo:MS_4000092 obo:IAO_0000115 "A table with the PCA results of identified MS1 feature areas."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000092"^^xsd:string ; a owl:Class ; rdfs:label "identified MS1 feature area principal component analysis result"^^xsd:string ; rdfs:subClassOf obo:MS_4000005, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000081 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000086 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000008 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000013 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000021 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000082 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000083 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000084 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000085 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000087 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000088 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000089 ] . obo:MS_4000093 obo:IAO_0000115 "A table with the PCA results of unidentified but multiple-run-matched MS1 feature areas."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000093"^^xsd:string ; a owl:Class ; rdfs:label "unidentified MS1 feature area principal component analysis result"^^xsd:string ; rdfs:subClassOf obo:MS_4000005, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000081 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000086 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000008 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000013 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000021 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000082 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000083 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000084 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000085 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000087 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000088 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000089 ] . obo:MS_4000094 obo:IAO_0000115 "A table with the PCA results of identified MS1 feature areas after batch-correction."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "MS:4000094"^^xsd:string ; a owl:Class ; rdfs:label "batch-corrected identified MS1 feature area principal component analysis result"^^xsd:string ; rdfs:subClassOf obo:MS_4000005, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000081 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000086 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000008 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000013 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000021 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000082 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000083 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000084 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000085 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000087 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000088 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_4000089 ] . obo:NCIT_C16847 obo:IAO_0000115 "A practiced and regimented skill or series of actions."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "NCIT:C16847"^^xsd:string ; a owl:Class ; rdfs:label "Technique"^^xsd:string ; rdfs:subClassOf obo:NCIT_C43431 . obo:NCIT_C19044 obo:IAO_0000115 "A method of analyzing or representing statistical data; a procedure for calculating a statistic."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "NCIT:C19044"^^xsd:string ; a owl:Class ; rdfs:label "Statistical Technique"^^xsd:string ; rdfs:subClassOf obo:NCIT_C16847 . obo:NCIT_C20181 obo:IAO_0000115 "An organizational header for concepts representing mostly abstract entities."^^xsd:string ; oboInOwl:hasExactSynonym "Conceptual Entity"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "NCIT:C20181"^^xsd:string ; a owl:Class ; rdfs:label "Conceptual Entity"^^xsd:string . obo:NCIT_C20189 obo:IAO_0000115 "A distinguishing quality or prominent aspect of a person, object, action, process, or substance."^^xsd:string ; oboInOwl:hasExactSynonym "Property or Attribute"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "NCIT:C20189"^^xsd:string ; a owl:Class ; rdfs:label "Property or Attribute"^^xsd:string . obo:NCIT_C21514 obo:IAO_0000115 "Terms used to indicate units of time or other terms associated with time."^^xsd:string ; oboInOwl:hasExactSynonym "Temporal Qualifier"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "NCIT:C21514"^^xsd:string ; a owl:Class ; rdfs:label "Temporal Qualifier"^^xsd:string ; rdfs:subClassOf obo:NCIT_C41009 . obo:NCIT_C25330 obo:IAO_0000115 "The period of time during which something continues."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "NCIT:C25330"^^xsd:string ; a owl:Class ; rdfs:label "Duration"^^xsd:string ; rdfs:subClassOf obo:NCIT_C21514 . obo:NCIT_C25404 obo:IAO_0000115 "A thing done."^^xsd:string ; oboInOwl:hasExactSynonym "Action"^^xsd:string, "Generic Action"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "NCIT:C25404"^^xsd:string ; oboInOwl:inSubset obo:NCIT_C105763 ; a owl:Class ; rdfs:label "Action"^^xsd:string ; rdfs:subClassOf obo:NCIT_C43431 . obo:NCIT_C25447 obo:IAO_0000115 "The distinguishing qualities or prominent aspect of a person, object, action, process, or substance."^^xsd:string ; oboInOwl:hasExactSynonym "Characteristic"^^xsd:string, "Characteristics"^^xsd:string, "Feature"^^xsd:string, "Features"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "NCIT:C25447"^^xsd:string ; a owl:Class ; rdfs:label "Characteristic"^^xsd:string ; rdfs:subClassOf obo:NCIT_C20189 . obo:NCIT_C41009 obo:IAO_0000115 "A term that helps define and render a concept unique."^^xsd:string ; oboInOwl:hasExactSynonym "Modifier"^^xsd:string, "Qualifier"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "NCIT:C41009"^^xsd:string ; a owl:Class ; rdfs:label "Qualifier"^^xsd:string ; rdfs:subClassOf obo:NCIT_C20189 . obo:NCIT_C43431 obo:IAO_0000115 "An active process; excludes processes and mechanisms which fulfill biological functions."^^xsd:string ; oboInOwl:hasExactSynonym "Activity"^^xsd:string, "General activity"^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "NCIT:C43431"^^xsd:string ; a owl:Class ; rdfs:label "Activity"^^xsd:string . obo:NCIT_C45781 obo:IAO_0000115 "The amount of something per unit size."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "NCIT:C45781"^^xsd:string ; a owl:Class ; rdfs:label "Density"^^xsd:string ; rdfs:subClassOf obo:NCIT_C25447 . obo:NCIT_C60694 obo:IAO_0000115 "One of the axes representing the projection of varience resulting from principal component analysis."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "NCIT:C60694"^^xsd:string ; a owl:Class ; rdfs:label "Principal Component"^^xsd:string ; rdfs:subClassOf obo:NCIT_C19044 . obo:NCIT_C68811 obo:IAO_0000115 "Span a region or interval of distance, space or time."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "NCIT:C68811"^^xsd:string ; a owl:Class ; rdfs:label "Cover"^^xsd:string ; rdfs:subClassOf obo:NCIT_C25404 . obo:NCIT_C79083 obo:IAO_0000115 "An observation in a data set that is numerically distant from the rest of the data."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "NCIT:C79083"^^xsd:string ; a owl:Class ; rdfs:label "Outlier"^^xsd:string ; rdfs:subClassOf obo:NCIT_C20181 . obo:PEFF_0000001 obo:IAO_0000115 "PSI Extended FASTA Format controlled vocabulary term."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0000001"^^xsd:string ; a owl:Class ; rdfs:label "PEFF CV term"^^xsd:string ; rdfs:subClassOf [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:MS_0000000 ] . obo:PEFF_0000002 obo:IAO_0000115 "CV term that may appear in a PEFF file header section."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0000002"^^xsd:string ; a owl:Class ; rdfs:label "PEFF file header section term"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000001 . obo:PEFF_0000003 obo:IAO_0000115 "CV term that may appear in a description line of a PEFF file individual sequence entry."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0000003"^^xsd:string ; a owl:Class ; rdfs:label "PEFF file sequence entry term"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000001 . obo:PEFF_0000008 obo:IAO_0000115 "PEFF keyword for the sequence database name."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0000008"^^xsd:string ; a owl:Class ; rdfs:label "DbName"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000002, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0000009 obo:IAO_0000115 "PEFF keyword for the sequence database prefix."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0000009"^^xsd:string ; a owl:Class ; rdfs:label "Prefix"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000002, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0000010 obo:IAO_0000115 "PEFF keyword for the sequence database short description."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0000010"^^xsd:string ; a owl:Class ; rdfs:label "DbDescription"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000002, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0000011 obo:IAO_0000115 "PEFF keyword for the specifying whether the sequence database is a decoy database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0000011"^^xsd:string ; a owl:Class ; rdfs:label "Decoy"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000002, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_boolean ] . obo:PEFF_0000012 obo:IAO_0000115 "PEFF keyword for the source of the database file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0000012"^^xsd:string ; a owl:Class ; rdfs:label "DbSource"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000002, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0000013 obo:IAO_0000115 "PEFF keyword for the database version (release date) according to database provider."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0000013"^^xsd:string ; a owl:Class ; rdfs:label "DbVersion"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000002, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0000014 obo:IAO_0000115 "OBSOLETE PEFF keyword for the database date (release or file date of the source) according to database provider."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0000014"^^xsd:string ; a owl:Class ; rdfs:comment "This term was obsoleted."^^xsd:string ; rdfs:label "DbDate"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000002 ; owl:deprecated true . obo:PEFF_0000015 obo:IAO_0000115 "PEFF keyword for the sumber of sequence entries in the database."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0000015"^^xsd:string ; a owl:Class ; rdfs:label "NumberOfEntries"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000002, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_integer ] . obo:PEFF_0000016 obo:IAO_0000115 "PEFF keyword for the description of the conversion from original format to this current one."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0000016"^^xsd:string ; a owl:Class ; rdfs:label "Conversion"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000002, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0000017 obo:IAO_0000115 "PEFF keyword for the molecular type of the sequences."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0000017"^^xsd:string ; a owl:Class ; rdfs:label "SequenceType"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000002, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:PEFF_1002002 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0000018 obo:IAO_0000115 "PEFF keyword for database specific keywords not included in the current controlled vocabulary."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0000018"^^xsd:string ; a owl:Class ; rdfs:label "SpecificKey"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000002, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0000019 obo:IAO_0000115 "PEFF keyword for the specific values for a custom key."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0000019"^^xsd:string ; a owl:Class ; rdfs:label "SpecificValue"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000002, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0000020 obo:IAO_0000115 "PEFF keyword for the short description of the PEFF file."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0000020"^^xsd:string ; a owl:Class ; rdfs:label "DatabaseDescription"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000002, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0000021 obo:IAO_0000115 "PEFF keyword for a general comment."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0000021"^^xsd:string ; a owl:Class ; rdfs:label "GeneralComment"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000002, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0000022 obo:IAO_0000115 "PEFF keyword that when set to 'true' indicates that the database contains complete proteoforms."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0000022"^^xsd:string ; a owl:Class ; rdfs:label "ProteoformDb"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000002, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0000023 obo:IAO_0000115 "PEFF keyword for the short tag (abbreviation) and longer definition used to annotate a sequence annotation (such as variant or modification) in the OptionalTag location."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0000023"^^xsd:string ; a owl:Class ; rdfs:label "OptionalTagDef"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000002, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0000024 obo:IAO_0000115 "PEFF keyword that when set to 'true' indicates that entries in the database have identifiers for each annotation."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0000024"^^xsd:string ; a owl:Class ; rdfs:label "HasAnnotationIdentifiers"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000002, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001001 obo:IAO_0000115 "OBSOLETE Sequence database unique identifier."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001001"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete because decided in Heidelberg 2018-04 that this is redundant."^^xsd:string ; rdfs:label "DbUniqueId"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:PEFF_0001002 obo:IAO_0000115 "PEFF keyword for the protein full name."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001002"^^xsd:string ; a owl:Class ; rdfs:label "PName"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001003 obo:IAO_0000115 "PEFF keyword for the NCBI taxonomy identifier."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001003"^^xsd:string ; a owl:Class ; rdfs:label "NcbiTaxId"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:PEFF_0001004 obo:IAO_0000115 "PEFF keyword for the taxonomy name (latin or common name)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001004"^^xsd:string ; a owl:Class ; rdfs:label "TaxName"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001005 obo:IAO_0000115 "PEFF keyword for the gene name."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001005"^^xsd:string ; a owl:Class ; rdfs:label "GName"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001006 obo:IAO_0000115 "PEFF keyword for the sequence length."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001006"^^xsd:string ; a owl:Class ; rdfs:label "Length"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:PEFF_0001007 obo:IAO_0000115 "PEFF keyword for the sequence version."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001007"^^xsd:string ; a owl:Class ; rdfs:label "SV"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001008 obo:IAO_0000115 "PEFF keyword for the entry version."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001008"^^xsd:string ; a owl:Class ; rdfs:label "EV"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001009 obo:IAO_0000115 "PEFF keyword for the Protein Evidence; A UniProtKB code 1-5."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001009"^^xsd:string ; a owl:Class ; rdfs:label "PE"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_int ] . obo:PEFF_0001010 obo:IAO_0000115 "PEFF keyword for information on how the full length original protein sequence can be processed into shorter components such as signal peptides and chains."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001010"^^xsd:string ; a owl:Class ; rdfs:label "Processed"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:PEFF_1002001 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001011 obo:IAO_0000115 "OBSOLETE Sequence variation (substitution, insertion, deletion)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001011"^^xsd:string ; a owl:Class ; rdfs:comment "This term was made obsolete in favor of VariantSimple and VariantComplex."^^xsd:string ; rdfs:label "Variant"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:PEFF_1002001 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] ; owl:deprecated true . obo:PEFF_0001012 obo:IAO_0000115 "PEFF keyword for the modified residue with PSI-MOD identifier."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001012"^^xsd:string ; a owl:Class ; rdfs:label "ModResPsi"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:PEFF_1002001 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001013 obo:IAO_0000115 "PEFF keyword for the modified residue without aPSI-MOD or UniMod identifier."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001013"^^xsd:string ; a owl:Class ; rdfs:label "ModRes"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:PEFF_1002001 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001014 obo:IAO_0000115 "PEFF keyword for the Alternative Accession Code."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001014"^^xsd:string ; a owl:Class ; rdfs:label "AltAC"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001015 obo:IAO_0000115 "PEFF keyword for the sequence status. Complete or Fragment."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001015"^^xsd:string ; a owl:Class ; rdfs:label "SeqStatus"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:PEFF_1002003 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001016 obo:IAO_0000115 "PEFF keyword for the entry associated comment."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001016"^^xsd:string ; a owl:Class ; rdfs:label "CC"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001017 obo:IAO_0000115 "PEFF keyword for the entry associated keyword(s)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001017"^^xsd:string ; a owl:Class ; rdfs:label "KW"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001018 obo:IAO_0000115 "PEFF keyword for the Gene Ontology code."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001018"^^xsd:string ; a owl:Class ; rdfs:label "GO"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001019 obo:IAO_0000115 "PEFF keyword for the cross-reference to an external resource."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001019"^^xsd:string ; a owl:Class ; rdfs:label "XRef"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001020 obo:IAO_0000115 "Portion of a newly synthesized protein that contributes to a final structure after other components such as signal peptides are removed."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001020"^^xsd:string ; a owl:Class ; rdfs:label "mature protein"^^xsd:string ; rdfs:subClassOf obo:PEFF_0001032, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:PEFF_1002001 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001021 obo:IAO_0000115 "Short peptide present at the N-terminus of a newly synthesized protein that is cleaved off and is not part of the final mature protein."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001021"^^xsd:string ; a owl:Class ; rdfs:label "signal peptide"^^xsd:string ; rdfs:subClassOf obo:PEFF_0001032, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:PEFF_1002001 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001022 obo:IAO_0000115 "Short peptide present at the N-terminus of a newly synthesized protein that helps the protein through the membrane of its destination organelle."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001022"^^xsd:string ; a owl:Class ; rdfs:label "transit peptide"^^xsd:string ; rdfs:subClassOf obo:PEFF_0001032, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:PEFF_1002001 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001023 obo:IAO_0000115 "PEFF keyword for the sequence conflict; a UniProtKB term."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001023"^^xsd:string ; a owl:Class ; rdfs:label "Conflict"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:PEFF_1002001 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001024 obo:IAO_0000115 "PEFF keyword for the Sequence checksum in crc64."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001024"^^xsd:string ; a owl:Class ; rdfs:label "Crc64"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001025 obo:IAO_0000115 "PEFF keyword for the sequence range of a domain."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001025"^^xsd:string ; a owl:Class ; rdfs:label "Domain"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001026 obo:IAO_0000115 "PEFF keyword for the UniProtKB specific Protein identifier ID; a UniProtKB term."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001026"^^xsd:string ; a owl:Class ; rdfs:label "ID"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001027 obo:IAO_0000115 "PEFF keyword for the modified residue with UniMod identifier."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001027"^^xsd:string ; a owl:Class ; rdfs:label "ModResUnimod"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:PEFF_1002001 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001028 obo:IAO_0000115 "PEFF keyword for the simple sequence variation of a single amino acid change. A change to a stop codon is permitted with a * symbol. More complex variations must be encoded with the VariantComplex term."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001028"^^xsd:string ; a owl:Class ; rdfs:label "VariantSimple"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:PEFF_1002001 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001029 obo:IAO_0000115 "PEFF keyword for a sequence variation that is more complex than a single amino acid change or change to a stop codon."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001029"^^xsd:string ; a owl:Class ; rdfs:label "VariantComplex"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:PEFF_1002001 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001030 obo:IAO_0000115 "PEFF keyword for the proteoforms of this protein, constructed as a set of annotation identifiers."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001030"^^xsd:string ; a owl:Class ; rdfs:label "Proteoform"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001031 obo:IAO_0000115 "PEFF keyword for the disulfide bonds in this protein, constructed as a sets of annotation identifiers of two half-cystine modifications."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001031"^^xsd:string ; a owl:Class ; rdfs:label "DisulfideBond"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001032 obo:IAO_0000115 "PEFF keyword describing the type of processing event being described."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001032"^^xsd:string ; a owl:Class ; rdfs:label "PEFF molecule processing keyword"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003 . obo:PEFF_0001033 obo:IAO_0000115 "PEFF keyword for the individual protein entry comment. It is discouraged to put parsable information here. This is only for free-text commentary."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001033"^^xsd:string ; a owl:Class ; rdfs:label "Comment"^^xsd:string ; rdfs:subClassOf obo:PEFF_0000003, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001034 obo:IAO_0000115 "Short peptide that is cleaved off a newly synthesized protein and generally immediately degraded in the process of protein maturation, and is not a signal peptide or transit peptide."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001034"^^xsd:string ; a owl:Class ; rdfs:label "propeptide"^^xsd:string ; rdfs:subClassOf obo:PEFF_0001032, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:PEFF_1002001 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_0001035 obo:IAO_0000115 "N-terminal methionine residue of a protein that can be co-translationally cleaved."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:0001035"^^xsd:string ; a owl:Class ; rdfs:label "initiator methionine"^^xsd:string ; rdfs:subClassOf obo:PEFF_0001032, [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:PEFF_1002001 ], [ a owl:Restriction ; owl:onProperty ; owl:someValuesFrom obo:xsd_string ] . obo:PEFF_1002001 obo:IAO_0000115 "([0-9]+|[A-Z*](|.+)?)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:1002001"^^xsd:string ; a owl:Class ; rdfs:label "regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment"^^xsd:string ; rdfs:subClassOf obo:MS_1002479 . obo:PEFF_1002002 obo:IAO_0000115 "(AA|NA|DNA|cDNA|RNA|RNAi|tRNA|rRNA|siRNA|mDNA|mRNA|snoRNA|ncRNA|EST|[a-z0-9A-Z]+)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:1002002"^^xsd:string ; a owl:Class ; rdfs:label "regular expression for PEFF molecular sequence type"^^xsd:string ; rdfs:subClassOf obo:MS_1002479 . obo:PEFF_1002003 obo:IAO_0000115 "(Complete|Fragment|[a-z0-9A-Z]+)."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "PEFF:1002003"^^xsd:string ; a owl:Class ; rdfs:label "regular expression for PEFF sequence status"^^xsd:string ; rdfs:subClassOf obo:MS_1002479 . obo:STATO_0000035 a owl:Class . obo:STATO_0000105 a owl:Class . obo:STATO_0000291 a owl:Class . obo:UO_0000002 a owl:Class . obo:UO_0000008 a owl:Class . obo:UO_0000010 a owl:Class . obo:UO_0000012 a owl:Class . obo:UO_0000017 a owl:Class . obo:UO_0000018 a owl:Class . obo:UO_0000021 a owl:Class . obo:UO_0000027 a owl:Class . obo:UO_0000028 a owl:Class . obo:UO_0000031 a owl:Class . obo:UO_0000098 a owl:Class . obo:UO_0000106 a owl:Class . obo:UO_0000110 a owl:Class . obo:UO_0000112 a owl:Class . obo:UO_0000150 a owl:Class . obo:UO_0000166 a owl:Class . obo:UO_0000169 a owl:Class . obo:UO_0000175 a owl:Class . obo:UO_0000185 a owl:Class . obo:UO_0000187 a owl:Class . obo:UO_0000189 a owl:Class . obo:UO_0000191 a owl:Class . obo:UO_0000218 a owl:Class . obo:UO_0000221 a owl:Class . obo:UO_0000222 a owl:Class . obo:UO_0000228 a owl:Class . obo:UO_0000266 a owl:Class . obo:UO_0000268 a owl:Class . obo:UO_0000269 a owl:Class . obo:UO_0000271 a owl:Class . obo:UO_0000324 a owl:Class . obo:ionMass_ a owl:AnnotationProperty . oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "has_column"^^xsd:string ; a owl:ObjectProperty ; rdfs:label "has_column"^^xsd:string . oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "has_domain"^^xsd:string ; a owl:ObjectProperty ; rdfs:label "has_domain"^^xsd:string . oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "has_metric_category"^^xsd:string ; a owl:ObjectProperty ; rdfs:label "has_metric_category"^^xsd:string . oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "has_optional_column"^^xsd:string ; a owl:ObjectProperty ; rdfs:label "has_optional_column"^^xsd:string . oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "has_order"^^xsd:string ; a owl:ObjectProperty ; rdfs:label "has_order"^^xsd:string . oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "has_regexp"^^xsd:string ; a owl:ObjectProperty ; rdfs:label "has regexp"^^xsd:string . a owl:ObjectProperty . obo:IAO_0000115 "The term is encoded in the structure of the named file format rather than as an explicit parameter, and should not be used as one in that format."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "has_structured_representation_in_format"^^xsd:string ; a owl:ObjectProperty ; rdfs:label "has structured representation in format"^^xsd:string . oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "has_units"^^xsd:string ; a owl:ObjectProperty ; rdfs:label "has_units"^^xsd:string . oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "has_value_concept"^^xsd:string ; a owl:ObjectProperty ; rdfs:label "has_value_concept"^^xsd:string . obo:IAO_0000115 "'Entity A' has value type 'Entity B', such as xsd:float."^^xsd:string ; oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "has_value_type"^^xsd:string ; a owl:ObjectProperty ; rdfs:label "has value type"^^xsd:string . oboInOwl:hasOBONamespace "MS"^^xsd:string ; oboInOwl:id "part_of"^^xsd:string ; a owl:ObjectProperty, owl:TransitiveProperty ; rdfs:label "part_of"^^xsd:string . oboInOwl:NamespaceIdRule "* MS:$sequence(7,0,9999999)$"^^xsd:string, "* PEFF:$sequence(7,0,9999999)$"^^xsd:string ; oboInOwl:auto-generated-by "OBO-Edit 2.3.1"^^xsd:string ; oboInOwl:date "07:01:2022 11:44"^^xsd:string ; oboInOwl:default-namespace "MS"^^xsd:string ; oboInOwl:hasOBOFormatVersion "1.2"^^xsd:string ; oboInOwl:saved-by "Joshua Klein"^^xsd:string ; a owl:Ontology ; rdfs:comment "For any queries contact psidev-ms-vocab@lists.sourceforge.net"^^xsd:string, "This work is licensed under the Creative Commons Attribution 4.0 International (CC BY 4.0) license."^^xsd:string, "To view a copy of this license, visit https://creativecommons.org/licenses/by/4.0/ or send a letter to Creative Commons, 444 Castro Street, Suite 900, Mountain View, California, 94041, USA."^^xsd:string, "URL: https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo"^^xsd:string, "When appropriate the definition and synonyms of a term are reported exactly as in the chapter 12 of IUPAC orange book. See http://www.iupac.org/projects/2003/2003-056-2-500.html and http://mass-spec.lsu.edu/msterms/index.php/Main_Page"^^xsd:string, "coverage of namespace-id: MS:$sequence(7,4000000,4999999)$: Mass spectrometry quality control metrics"^^xsd:string, "coverage: Mass spectrometer output files and spectra interpretation"^^xsd:string, "creator: Andreas Bertsch informatik.uni-tuebingen.de>"^^xsd:string, "creator: Chris Bielow fu-berlin.de>"^^xsd:string, "creator: Eric Deutsch systemsbiology.org>"^^xsd:string, "creator: Fredrik Levander immun.lth.se>"^^xsd:string, "creator: Gerhard Mayer rub.de>"^^xsd:string, "creator: Joshua Klein bu.edu>"^^xsd:string, "creator: Julian Uszkoreit ruhr-uni-bochum.de>"^^xsd:string, "creator: Marius Kallhardt bdal.de>"^^xsd:string, "creator: Mathias Walzer ebi.ac.uk>"^^xsd:string, "creator: Matt Chambers vanderbilt.edu>"^^xsd:string, "creator: Nils Hoffmann < nils.hoffmann <-at-> cebitec.uni-bielefeld.de>"^^xsd:string, "creator: Pierre-Alain Binz chuv.ch>"^^xsd:string, "creator: Wout Bittremieux health.ucsd.edu>"^^xsd:string, "creator: Yasset Perez-Riverol ebi.ac.uk>"^^xsd:string, "namespace: MS"^^xsd:string, "namespace: PEFF"^^xsd:string, "publisher: HUPO Proteomics Standards Initiative Mass Spectrometry Standards Working Group and HUPO Proteomics Standards Initiative Proteomics Informatics Working Group"^^xsd:string ; owl:imports , , ; owl:versionIRI . obo:xsd_anyURI a owl:Class . obo:xsd_boolean a owl:Class . obo:xsd_dateTime a owl:Class . obo:xsd_decimal a owl:Class . obo:xsd_double a owl:Class . obo:xsd_float a owl:Class . obo:xsd_int a owl:Class . obo:xsd_integer a owl:Class . obo:xsd_nonNegativeInteger a owl:Class . obo:xsd_positiveInteger a owl:Class . obo:xsd_string a owl:Class . oboInOwl:NamespaceIdRule a owl:AnnotationProperty ; rdfs:label "namespace-id-rule"^^xsd:string . oboInOwl:auto-generated-by a owl:AnnotationProperty . oboInOwl:date a owl:AnnotationProperty . oboInOwl:default-namespace a owl:AnnotationProperty . oboInOwl:hasDbXref a owl:AnnotationProperty ; rdfs:label "database_cross_reference"^^xsd:string . oboInOwl:hasExactSynonym a owl:AnnotationProperty ; rdfs:label "has_exact_synonym"^^xsd:string . oboInOwl:hasNarrowSynonym a owl:AnnotationProperty ; rdfs:label "has_narrow_synonym"^^xsd:string . oboInOwl:hasOBOFormatVersion a owl:AnnotationProperty ; rdfs:label "has_obo_format_version"^^xsd:string . oboInOwl:hasOBONamespace a owl:AnnotationProperty ; rdfs:label "has_obo_namespace"^^xsd:string . oboInOwl:hasRelatedSynonym a owl:AnnotationProperty ; rdfs:label "has_related_synonym"^^xsd:string . doku:id a owl:AnnotationProperty . obo2:NCIT_C16847 a owl:AnnotationProperty . obo2:NCIT_C19044 a owl:AnnotationProperty . obo2:NCIT_C60694 a owl:AnnotationProperty . obo2:NCIT_P378 a owl:AnnotationProperty . obo2:NCIT_P383 a owl:AnnotationProperty . obo2:NCIT_P384 a owl:AnnotationProperty . oboInOwl:id a owl:AnnotationProperty . oboInOwl:inSubset a owl:AnnotationProperty ; rdfs:label "in_subset"^^xsd:string . oboInOwl:saved-by a owl:AnnotationProperty . rdfs:comment a owl:AnnotationProperty . rdfs:label a owl:AnnotationProperty . owl:deprecated a owl:AnnotationProperty . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_0000000 ; owl:annotatedTarget "Proteomics Standards Initiative Mass Spectrometry Vocabularies."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000787 ; owl:annotatedTarget "Threshold at or below which some action is taken."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000788 ; owl:annotatedTarget "Threshold at or above which some action is taken."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000053 ; owl:annotatedTarget "Sample batch lot identifier."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000789 ; owl:annotatedTarget "MS1 spectrum that is enriched in multiply-charged ions compared to singly-charged ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000790 ; owl:annotatedTarget "MSn spectrum in which the product ions are collected after a time delay, which allows the observation of lower energy fragmentation processes after precursor ion activation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000791 ; owl:annotatedTarget "OBSOLETE Scan with enhanced resolution."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000792 ; owl:annotatedTarget "Isolation window parameter."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000793 ; owl:annotatedTarget "OBSOLETE The highest m/z being isolated in an isolation window."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000054 ; owl:annotatedTarget "OBSOLETE Chromatographic conditions used to obtain the sample."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000794 ; owl:annotatedTarget "OBSOLETE The lowest m/z being isolated in an isolation window."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000795 ; owl:annotatedTarget "Use this term if only one scan was recorded or there is no information about scans available."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000796 ; owl:annotatedTarget "Free-form text title describing a spectrum, usually a series of key value pairs as used in an MGF file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000797 ; owl:annotatedTarget "A list of scan numbers and or scan ranges associated with a peak list. If possible the list of scans should be converted to native spectrum identifiers instead of using this term."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000798 ; owl:annotatedTarget "A list of raw scans and or scan ranges used to generate a peak list. If possible the list of scans should be converted to native spectrum identifiers instead of using this term."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000799 ; owl:annotatedTarget "A software tool that has not yet been released. The value should describe the software. Please do not use this term for publicly available software - contact the PSI-MS working group in order to have another CV term added."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000055 ; owl:annotatedTarget "Fast atom bombardment ionization in which the analyte in solution is entrained in a flowing liquid matrix."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000800 ; owl:annotatedTarget "The observed mass divided by the difference between two masses that can be separated: m/dm. The procedure by which dm was obtained and the mass at which the measurement was made should be reported."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000801 ; owl:annotatedTarget "Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The area defined by all raw data points that belong to the peak is reported."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000802 ; owl:annotatedTarget "Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The maximum intensity of all raw data points that belong to the peak is reported."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000803 ; owl:annotatedTarget "Offset between two analyzers in a constant neutral loss or neutral gain scan. The value corresponds to the neutral loss or neutral gain value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000804 ; owl:annotatedTarget "A plot of the relative intensity of electromagnetic radiation as a function of the wavelength."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000805 ; owl:annotatedTarget "A plot of the relative intensity of electromagnetic radiation emitted by atoms or molecules when excited."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000806 ; owl:annotatedTarget "A plot of the relative intensity of electromagnetic radiation absorbed by atoms or molecules when excited."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000056 ; owl:annotatedTarget "The sample is directly inserted into the ion source, usually on the end of a heatable probe."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000807 ; owl:annotatedTarget "Unit describing the scan rate of a spectrum in Thomson per second."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000808 ; owl:annotatedTarget "Chromatogram properties that are associated with a value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000809 ; owl:annotatedTarget "A free-form text title describing a chromatogram."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000810 ; owl:annotatedTarget "Representation of the current of ions versus time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000811 ; owl:annotatedTarget "Representation of electromagnetic properties versus time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000812 ; owl:annotatedTarget "Representation of light absorbed by the sample versus time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000813 ; owl:annotatedTarget "Representation of light emitted by the sample versus time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000814 ; owl:annotatedTarget "The number of counted events observed per second in one or a group of elements of a detector."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000057 ; owl:annotatedTarget "Inlet used for introducing the liquid sample into an electrospray ionization source."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000815 ; owl:annotatedTarget "Bruker BAF raw file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000816 ; owl:annotatedTarget "Bruker HyStar U2 file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000817 ; owl:annotatedTarget "Bruker software for hyphenated experiments."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000818 ; owl:annotatedTarget "Acquity UPLC Photodiode Array Detector."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000819 ; owl:annotatedTarget "Acquity UPLC Fluorescence Detector."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000820 ; owl:annotatedTarget "A data array of flow rate measurements."^^xsd:string . [] a owl:Axiom ; rdfs:label "32-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1000820 ; owl:annotatedTarget "binary-data-type:MS:1000521"^^xsd:string . [] a owl:Axiom ; rdfs:label "64-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1000820 ; owl:annotatedTarget "binary-data-type:MS:1000523"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000058 ; owl:annotatedTarget "Sample is directly injected or infused into the ionization source."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000821 ; owl:annotatedTarget "A data array of pressure measurements."^^xsd:string . [] a owl:Axiom ; rdfs:label "32-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1000821 ; owl:annotatedTarget "binary-data-type:MS:1000521"^^xsd:string . [] a owl:Axiom ; rdfs:label "64-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1000821 ; owl:annotatedTarget "binary-data-type:MS:1000523"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000822 ; owl:annotatedTarget "A data array of temperature measurements."^^xsd:string . [] a owl:Axiom ; rdfs:label "32-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1000822 ; owl:annotatedTarget "binary-data-type:MS:1000521"^^xsd:string . [] a owl:Axiom ; rdfs:label "64-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1000822 ; owl:annotatedTarget "binary-data-type:MS:1000523"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000823 ; owl:annotatedTarget "Native format defined by declaration=xsd:nonNegativeInteger collection=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000824 ; owl:annotatedTarget "No nativeID format indicates that the file tagged with this term does not contain spectra that can have a nativeID format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000825 ; owl:annotatedTarget "Bruker FID file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000059 ; owl:annotatedTarget "A gas discharge ion source in which the energy to the plasma is supplied by electromagnetic induction."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000826 ; owl:annotatedTarget "The time of elution from all used chromatographic columns (one or more) in the chromatographic separation step, relative to the start of the chromatography."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000827 ; owl:annotatedTarget "The primary or reference m/z about which the isolation window is defined."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000828 ; owl:annotatedTarget "The extent of the isolation window in m/z below the isolation window target m/z. The lower and upper offsets may be asymmetric about the target m/z."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000060 ; owl:annotatedTarget "The continuous flow of solution of a sample into the ionization source."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000829 ; owl:annotatedTarget "The extent of the isolation window in m/z above the isolation window target m/z. The lower and upper offsets may be asymmetric about the target m/z."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000831 ; owl:annotatedTarget "Properties of the preparation steps which took place before the measurement was performed."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000832 ; owl:annotatedTarget "Attributes to describe the technique how the sample is prepared with the matrix solution."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000833 ; owl:annotatedTarget "Describes the technique how the matrix is put on the sample target."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000061 ; owl:annotatedTarget "A device that separates carrier gas from gaseous analyte molecules on the basis of diffusivity."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000834 ; owl:annotatedTarget "Describes the chemical solution used as matrix."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000835 ; owl:annotatedTarget "Concentration of the chemical solution used as matrix."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000836 ; owl:annotatedTarget "Dried droplet in MALDI matrix preparation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000837 ; owl:annotatedTarget "Printed MALDI matrix preparation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000838 ; owl:annotatedTarget "Sprayed MALDI matrix preparation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000839 ; owl:annotatedTarget "Precoated MALDI sample plate."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000840 ; owl:annotatedTarget "Device that emits light (electromagnetic radiation) through a process called stimulated emission. The term is an acronym for Light Amplification by Stimulated Emission of Radiation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000062 ; owl:annotatedTarget "A device to separate carrier molecules from analyte molecules on the basis of ease of diffusion across a semipermeable membrane."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000841 ; owl:annotatedTarget "Laser properties that are associated with a value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000842 ; owl:annotatedTarget "Type of laser used for desorption purpose."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000843 ; owl:annotatedTarget "OBSOLETE The distance between two peaks of the emitted laser beam."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000844 ; owl:annotatedTarget "Describes the diameter of the laser beam in x direction."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000063 ; owl:annotatedTarget "Continuous moving surface in the form of a belt which passes through an ion source carrying analyte molecules."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000845 ; owl:annotatedTarget "Describes the diameter of the laser beam in y direction."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000846 ; owl:annotatedTarget "Describes output energy of the laser system. May be attenuated by filters or other means."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000847 ; owl:annotatedTarget "Describes how long the laser beam was emitted from the laser device."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000064 ; owl:annotatedTarget "Continuous moving surface in the form of a wire which passes through an ion source carrying analyte molecules."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000848 ; owl:annotatedTarget "Describes the reduction of the intensity of the laser beam energy."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000849 ; owl:annotatedTarget "Describes the angle between the laser beam and the sample target."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000850 ; owl:annotatedTarget "Laser which is powered by a gaseous medium."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000851 ; owl:annotatedTarget "Solid state laser materials are commonly made by doping a crystalline solid host with ions that provide the required energy states."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000852 ; owl:annotatedTarget "Dye lasers use an organic dye as the gain medium."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000853 ; owl:annotatedTarget "Free electron laser uses a relativistic electron beam as the lasing medium which move freely through a magnetic structure, hence the term."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000854 ; owl:annotatedTarget "Thermo Scientific LTQ XL MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000065 ; owl:annotatedTarget "A division of flowing stream of liquid into two streams."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000855 ; owl:annotatedTarget "Thermo Scientific LTQ Velos MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000856 ; owl:annotatedTarget "Thermo Scientific LTQ Velos MS with ETD."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000857 ; owl:annotatedTarget "Properties of the described run."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000858 ; owl:annotatedTarget "Identier string that describes the sample fraction. This identifier should contain the fraction number(s) or similar information."^^xsd:string . [] oboInOwl:hasDbXref "https://en.wikipedia.org/wiki/Molecule"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000859 ; owl:annotatedTarget "Group of two or more atoms held together by chemical bonds."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000860 ; owl:annotatedTarget "A molecule of low molecular weight that is composed of two or more amino acid residues."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000861 ; owl:annotatedTarget "A physical characteristic of a molecular entity."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000066 ; owl:annotatedTarget "Method for generating ions from a solution of an analyte."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000862 ; owl:annotatedTarget "The pH of a solution at which a charged molecule does not migrate in an electric field."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000863 ; owl:annotatedTarget "The pH of a solution at which a charged molecule would not migrate in an electric field, as predicted by a software algorithm."^^xsd:string . [] oboInOwl:hasDbXref "EDAM:0846"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000864 ; owl:annotatedTarget "A combination of symbols used to express the chemical composition of a molecule."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000865 ; owl:annotatedTarget "A chemical formula which expresses the proportions of the elements present in a substance."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000866 ; owl:annotatedTarget "A chemical compound formula expressing the number of atoms of each element present in a compound, without indicating how they are linked."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000867 ; owl:annotatedTarget "A chemical formula showing the number of atoms of each element in a molecule, their spatial arrangement, and their linkage to each other."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000067 ; owl:annotatedTarget "A sample inlet method involving a reservoir."^^xsd:string . [] oboInOwl:hasDbXref "EDAM:2301"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000868 ; owl:annotatedTarget "The simplified molecular input line entry specification or SMILES is a specification for unambiguously describing the structure of a chemical compound using a short ASCII string."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000869 ; owl:annotatedTarget "The gas pressure of the collision gas used for collisional excitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000870 ; owl:annotatedTarget "OBSOLETE SCIEX or Applied Biosystems|MDS SCIEX QTRAP 4000."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000871 ; owl:annotatedTarget "Software used to predict, select, or optimize transitions or analyze the results of selected reaction monitoring runs."^^xsd:string . [] oboInOwl:hasDbXref "http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP-MaRiMba"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000872 ; owl:annotatedTarget "Software used to predict transitions for selected reaction monitoring experiments based on observed spectrum libraries developed and distributed by the Institute for Systems Biology."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000873 ; owl:annotatedTarget "Software used to predict or calculate numerical attributes of peptides."^^xsd:string . [] oboInOwl:hasDbXref "http://hs2.proteome.ca/SSRCalc/SSRCalc.html"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000874 ; owl:annotatedTarget "Sequence Specific Retention Calculator estimates the retention time of peptides based on their sequence."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000068 ; owl:annotatedTarget "A disc composed of a flexible material that seals the entrance to the reservoir. Can also be entrance to the vacuum chamber."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000875 ; owl:annotatedTarget "Potential difference between the orifice and the skimmer in volts."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000876 ; owl:annotatedTarget "Potential difference between the sampling cone/orifice in volts."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000877 ; owl:annotatedTarget "Potential difference setting of the tube lens in volts."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000878 ; owl:annotatedTarget "An identifier/accession number to an external reference database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000069 ; owl:annotatedTarget "A method for generating gas phase ions from a solution of an analyte by rapid heating of the sample."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000879 ; owl:annotatedTarget "A unique identifier for a publication in the PubMed database (MIR:00000015)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000880 ; owl:annotatedTarget "The duration of intervals between scanning, during which the instrument configuration is switched."^^xsd:string . [] oboInOwl:hasDbXref "https://en.wikipedia.org/wiki/Molecular_entity"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000881 ; owl:annotatedTarget "Constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer, etc., identifiable as a separately distinguishable entity."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000882 ; owl:annotatedTarget "A compound composed of one or more chains of amino acids in a specific order determined by the base sequence of nucleotides in the DNA of a gene."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000883 ; owl:annotatedTarget "A short name or symbol of a protein (e.g., HSF 1 or HSF1_HUMAN)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000070 ; owl:annotatedTarget "Chemical ionization that takes place at atmospheric pressure as opposed to the reduced pressure is normally used for chemical ionization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000884 ; owl:annotatedTarget "An nonphysical characterstic attributed to a specific protein."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000885 ; owl:annotatedTarget "Identifier for a specific protein in a database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000886 ; owl:annotatedTarget "A long name describing the function of the protein."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000887 ; owl:annotatedTarget "Nonphysical characteristic attributed to a peptide."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000888 ; owl:annotatedTarget "Sequence of letter symbols denoting the order of amino acids that compose the peptide, with any amino acid mass modifications that might be present having been stripped away."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000071 ; owl:annotatedTarget "The formation of a new ion by the reaction of a neutral species with an ion. The process may involve transfer of an electron, a proton or other charged species between the reactants. When a positive ion results from chemical ionization the term may be used without qualification. When a negative ion results the term negative ion chemical ionization should be used. Note that this term is not synonymous with chemi-ionization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000889 ; owl:annotatedTarget "Sequence of letter symbols denoting the order of amino acid residues that compose the peptidoform including the encoding of any residue modifications that are present."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000890 ; owl:annotatedTarget "A state description of how a peptide might be isotopically or isobarically labelled."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000891 ; owl:annotatedTarget "A peptide that has been created or labelled with some heavier-than-usual isotopes."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000892 ; owl:annotatedTarget "A peptide that has not been labelled with heavier-than-usual isotopes. This is often referred to as \"light\" to distinguish from \"heavy\"."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000893 ; owl:annotatedTarget "An arbitrary string label used to mark a set of peptides that belong together in a set, whereby the members are differentiated by different isotopic labels. For example, the heavy and light forms of the same peptide will both be assigned the same peptide group label."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000005 ; owl:annotatedTarget "Total volume of solution used."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000072 ; owl:annotatedTarget "OBSOLETE The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000894 ; owl:annotatedTarget "A time interval from the start of chromatography when an analyte exits a chromatographic column."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000895 ; owl:annotatedTarget "A time interval from the start of chromatography when an analyte exits an unspecified local chromatographic column and instrumental setup."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000896 ; owl:annotatedTarget "A time interval from the start of chromatography when an analyte exits a standardized reference chromatographic column and instrumental setup."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000073 ; owl:annotatedTarget "A process in which ionized species in the gas phase are produced from an analyte-containing solution via highly charged fine droplets, by means of spraying the solution from a narrow-bore needle tip at atmospheric pressure in the presence of a high electric field. When a pressurized gas is used to aid in the formation of a stable spray, the term pneumatically assisted electrospray ionization is used. The term ion spray is not recommended."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000897 ; owl:annotatedTarget "A time interval from the start of chromatography when an analyte exits a chromatographic column as predicted by a referenced software application."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000898 ; owl:annotatedTarget "Something, such as a practice or a product, that is widely recognized or employed, especially because of its excellence."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000899 ; owl:annotatedTarget "A practice or product that has become a standard not because it has been approved by a standards organization but because it is widely used and recognized by the industry as being standard."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000900 ; owl:annotatedTarget "A specification of a minimum amount of information needed to reproduce or fully interpret a scientific result."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000901 ; owl:annotatedTarget "A standard providing the retention times at which a set of reference compounds exit the reference chromatographic column."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1074/mcp.M800569-MCP200"^^xsd:string, "PMID:19411281"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000902 ; owl:annotatedTarget "The de facto standard providing the retention times at which a set of halogenated reference peptides exit the reference chromatographic column."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000074 ; owl:annotatedTarget "The ionization of any species by the interaction of a focused beam of neutral atoms having a translational energy of several thousand eV with a sample that is typically dissolved in a solvent matrix. See also secondary ionization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000903 ; owl:annotatedTarget "The ordinal of the fragment within a specified ion series. (e.g. 8 for a y8 ion)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000904 ; owl:annotatedTarget "The difference in m/z of the predicted m/z based on the assigned product ion minus the actual observed peak m/z."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000905 ; owl:annotatedTarget "The magnitude of a peak expressed in terms of the percentage of the magnitude of the base peak intensity multiplied by 100. The base peak is therefore 10000. This unit is common in normalized spectrum libraries."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000906 ; owl:annotatedTarget "Ordinal specifying the rank in intensity of a peak in a spectrum. Base peak is 1. The next most intense peak is 2, etc."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000075 ; owl:annotatedTarget "The formation of gas-phase ions from molecules that are present in a solid or solvent matrix that is irradiated with a pulsed laser. See also laser desorption/ionization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000907 ; owl:annotatedTarget "Ordinal specifying the rank of a peak in a spectrum in terms of suitability for targeting. The most suitable peak is 1. The next most suitability peak is 2, etc. Suitability is algorithm and context dependant."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000908 ; owl:annotatedTarget "A set of two m/z values corresponding to the precursor m/z and a fragment m/z that in combination can be used to identify or quantify a specific ion, although not necessarily uniquely."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000909 ; owl:annotatedTarget "The strategy used to validate that a transition is effective."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000910 ; owl:annotatedTarget "The transition has been optimized by direct injection of the peptide into an instrument specified in a separate term, and the optimum voltages and fragmentation energies have been determined."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000911 ; owl:annotatedTarget "The transition has been validated by obtaining an MS2 spectrum and demonstrating that the peak is detectable on the instrument specified with a separate term."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000912 ; owl:annotatedTarget "The transition has been purported by obtaining an MS2 spectrum and demonstrating that the peak is detectable on the instrument specified with a separate term. However, the detecting instrument is of a different type (e.g. ion trap) than the instrument that the transition will eventually be used on (e.g. triple quad)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000913 ; owl:annotatedTarget "The transition has been predicted by informatics software without any direct spectral evidence."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000914 ; owl:annotatedTarget "A file format that has two or more columns of tabular data where each column is separated by a TAB character."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000076 ; owl:annotatedTarget "OBSOLETE."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000915 ; owl:annotatedTarget "An attribute of a window in time about which a peptide might elute from the column."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000916 ; owl:annotatedTarget "The extent of the retention time window in time units below the target retention time. The lower and upper offsets may be asymmetric about the target time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000917 ; owl:annotatedTarget "The extent of the retention time window in time units above the target retention time. The lower and upper offsets may be asymmetric about the target time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000077 ; owl:annotatedTarget "OBSOLETE."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000918 ; owl:annotatedTarget "A list of peptides or compounds and their expected m/z coordinates that can be used to cause a mass spectrometry to obtain spectra of those molecules specifically."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000919 ; owl:annotatedTarget "A priority setting specifying whether included or excluded targets have priority over the other."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000920 ; owl:annotatedTarget "A priority setting specifying that included targets have priority over the excluded targets if there is a conflict."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000921 ; owl:annotatedTarget "A priority setting specifying that excluded targets have priority over the included targets if there is a conflict."^^xsd:string . [] oboInOwl:hasDbXref "https://brendanx-uw1.gs.washington.edu/labkey/wiki/home/software/Skyline/page.view?name=default"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000922 ; owl:annotatedTarget "Software used to predict, select, and optimize transitions as well as analyze the results of selected reaction monitoring runs developed and distributed by the MacCoss lab at the University of Washington."^^xsd:string . [] oboInOwl:hasDbXref "http://tools.proteomecenter.org/TIQAM/TIQAM.html"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000923 ; owl:annotatedTarget "Software used to predict, select, and optimize transitions for selected reaction monitoring experiments developed and distributed by the Institute for Systems Biology."^^xsd:string . [] oboInOwl:hasDbXref "http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP-MaRiMba"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000924 ; owl:annotatedTarget "OBSOLETE Software used to predict transitions for selected reaction monitoring experiments based on observed spectrum libraries developed and distributed by the Institute for Systems Biology."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000925 ; owl:annotatedTarget "Software suite used to predict, select, and optimize transitions as well as analyze the results of selected reaction monitoring runs developed and distributed by the Institute for Systems Biology."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000078 ; owl:annotatedTarget "A linear ion trap mass spectrometer where ions are ejected along the axis of the analyzer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000926 ; owl:annotatedTarget "The integer rank given an interpretation of an observed product ion. For example, if y8 is selected as the most likely interpretation of a peak, then it is assigned a rank of 1."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000927 ; owl:annotatedTarget "The length of time spent filling an ion trapping device."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000928 ; owl:annotatedTarget "A spectrum derived from a special calibration source, rather than from the primary injected sample. A calibration spectrum is typically derived from a substance that can be used to correct systematic shift in m/z for spectra of the primary inject sample."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000929 ; owl:annotatedTarget "Native format defined by source=xsd:string start=xsd:nonNegativeInteger end=xsd:nonNegativeInteger."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000930 ; owl:annotatedTarget "Shimadzu Biotech format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000931 ; owl:annotatedTarget "Applied Biosystems|MDS SCIEX QTRAP 5500."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000932 ; owl:annotatedTarget "SCIEX TripleTOF 5600, a quadrupole - quadrupole - time-of-flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000079 ; owl:annotatedTarget "A mass spectrometer based on the principle of ion cyclotron resonance in which an ion in a magnetic field moves in a circular orbit at a frequency characteristic of its m/z value. Ions are coherently excited to a larger radius orbit using a pulse of radio frequency energy and their image charge is detected on receiver plates as a time domain signal. Fourier transformation of the time domain signal results in a frequency domain signal which is converted to a mass spectrum based in the inverse relationship between frequency and m/z."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000933 ; owl:annotatedTarget "Encoding of modifications of the protein sequence from the specified accession, written in PEFF notation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000934 ; owl:annotatedTarget "Name of the gene from which the protein is translated."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000935 ; owl:annotatedTarget "The 6470A Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000936 ; owl:annotatedTarget "The 6470B Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000937 ; owl:annotatedTarget "The 6495C Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001000 ; owl:annotatedTarget "Collection of terms from the PSI Proteome Informatics standards describing the interpretation of spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000080 ; owl:annotatedTarget "A device that produces a magnetic field perpendicular to a charged particle beam that deflects the beam to an extent that is proportional to the particle momentum per unit charge. For a monoenergetic beam, the deflection is proportional to m/z."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001006 ; owl:annotatedTarget "SEQUEST View Input Parameters."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001007 ; owl:annotatedTarget "Number of peptide results to show."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001009 ; owl:annotatedTarget "Number of full protein descriptions to show for top N peptides."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001010 ; owl:annotatedTarget "A de novo sequencing search (without database)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001011 ; owl:annotatedTarget "Details about the database searched."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001012 ; owl:annotatedTarget "The organisation, project or laboratory from where the database is obtained (UniProt, NCBI, EBI, other)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001013 ; owl:annotatedTarget "The name of the search database (nr, SwissProt or est_human)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000081 ; owl:annotatedTarget "A mass spectrometer that consists of four parallel rods whose centers form the corners of a square and whose opposing poles are connected. The voltage applied to the rods is a superposition of a static potential and a sinusoidal radio frequency potential. The motion of an ion in the x and y dimensions is described by the Matthieu equation whose solutions show that ions in a particular m/z range can be transmitted along the z axis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001014 ; owl:annotatedTarget "OBSOLETE: Use attribute in mzIdentML instead. Local file path of the search database from the search engine's point of view."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001015 ; owl:annotatedTarget "URI, from where the search database was originally downloaded."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001016 ; owl:annotatedTarget "Version of the search database. In mzIdentML use the attribute instead."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001017 ; owl:annotatedTarget "Date and time at which a product was publicly released. For mzIdentML, use the database release date XML attribute instead of this term."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001018 ; owl:annotatedTarget "Database containing amino acid or nucleic acid sequences."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001019 ; owl:annotatedTarget "Was there filtering used on the database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000082 ; owl:annotatedTarget "Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001020 ; owl:annotatedTarget "A taxonomy filter was to the database search."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001021 ; owl:annotatedTarget "Filtering applied specifically by accession number pattern."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001022 ; owl:annotatedTarget "Filtering applied specifically by protein molecular weight, specified as either a range or above/below a threshold value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001023 ; owl:annotatedTarget "Filtering applied specifically by predicted protein isoelectric focussing point (pI), specified as either a range or above/below a threshold value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001024 ; owl:annotatedTarget "The translated open reading frames from a nucleotide database considered in the search (range: 1-6)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001025 ; owl:annotatedTarget "The translation table used to translate the nucleotides to amino acids."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001027 ; owl:annotatedTarget "Filtering applied specifically by amino acid sequence pattern."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000083 ; owl:annotatedTarget "A linear ion trap mass spectrometer where ions are ejected along the radius of the analyzer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001028 ; owl:annotatedTarget "String in the header of a sequence entry for that entry to be searched."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001029 ; owl:annotatedTarget "The number of sequences (proteins / nucleotides) from the database search after filtering."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001030 ; owl:annotatedTarget "Number of peptide seqs compared to each spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001031 ; owl:annotatedTarget "A search using a library of spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001035 ; owl:annotatedTarget "OBSOLETE: use attribute in mzIdentML instead. Date and time of the actual search run."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001036 ; owl:annotatedTarget "The time taken to complete the search in seconds."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000084 ; owl:annotatedTarget "Instrument that separates ions by m/z in a field-free region after acceleration to a fixed acceleration energy."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001037 ; owl:annotatedTarget "Flag indicating that fragment ions should be shown."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001038 ; owl:annotatedTarget "Specify depth as value of the CVParam."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001040 ; owl:annotatedTarget "Type of the source file, the mzIdentML was created from."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001041 ; owl:annotatedTarget "SEQUEST View / Sort Input Parameters."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001042 ; owl:annotatedTarget "Specify \"number of dtas shown\" as value of the CVParam."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001044 ; owl:annotatedTarget "Details of cleavage agent (enzyme)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001045 ; owl:annotatedTarget "The name of the cleavage agent."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000085 ; owl:annotatedTarget "An attribute of resolution when recording the detector response in absence of the analyte."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001046 ; owl:annotatedTarget "Sort order of SEQUEST search results by the delta of the normalized correlation score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001047 ; owl:annotatedTarget "Sort order of SEQUEST search results by the difference between a theoretically calculated and the corresponding experimentally measured molecular mass M."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001048 ; owl:annotatedTarget "Sort order of SEQUEST search results given by the ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001049 ; owl:annotatedTarget "Sort order of SEQUEST search results given by the mass of the protonated ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001050 ; owl:annotatedTarget "Sort order of SEQUEST search results given by the probability."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000086 ; owl:annotatedTarget "A measure of resolution represented as width of the peak at half peak height."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001051 ; owl:annotatedTarget "OBSOLETE: use attribute independent in mzIdentML instead. Description of multiple enzyme digestion protocol, if any."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001052 ; owl:annotatedTarget "Sort order of SEQUEST search results given by the previous amino acid."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001053 ; owl:annotatedTarget "Sort order of SEQUEST search results given by the reference."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001055 ; owl:annotatedTarget "Modification parameters for the search engine run."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001056 ; owl:annotatedTarget "The specificity rules for the modifications applied by the search engine."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001057 ; owl:annotatedTarget "OBSOLETE: Tolerance on types."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000087 ; owl:annotatedTarget "An attribute of resolution when the ratio between adjacent signals is 10% of the signal height."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001058 ; owl:annotatedTarget "The quality estimation was done manually."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001059 ; owl:annotatedTarget "Sort order of SEQUEST search results given by the result 'Sp' of 'Rank/Sp' in the out file (peptide)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001060 ; owl:annotatedTarget "Method for quality estimation (manually or with decoy database)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001061 ; owl:annotatedTarget "OBSOLETE: replaced by MS:1000336 (neutral loss): Leave this to PSI-MOD."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001062 ; owl:annotatedTarget "Mascot MGF file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001065 ; owl:annotatedTarget "OBSOLETE: There is Phenyx:ScoringModel for Phenyx! Scoring model (more detailed granularity). TODO: add some child terms."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001066 ; owl:annotatedTarget "The description of the DEPRECATED ion fragment series (including charges and neutral losses) that are considered by the search engine."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001068 ; owl:annotatedTarget "Sort order of SEQUEST search results by the Sp score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000088 ; owl:annotatedTarget "OBSOLETE When resolution is constant with respect to m/z."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001069 ; owl:annotatedTarget "Sort order of SEQUEST search results given by the total ion current."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001070 ; owl:annotatedTarget "Sort order of SEQUEST search results given by the scan number."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001071 ; owl:annotatedTarget "Sort order of SEQUEST search results given by the sequence."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001072 ; owl:annotatedTarget "Sort order of SEQUEST search results given by the SEQUEST result 'Sf'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001073 ; owl:annotatedTarget "Database contains amino acid sequences."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001079 ; owl:annotatedTarget "Database contains nucleic acid sequences."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000089 ; owl:annotatedTarget "OBSOLETE When resolution is proportional with respect to m/z."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001080 ; owl:annotatedTarget "Enumeration of type of search value (i.e. from PMF, sequence tag, MS2)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001081 ; owl:annotatedTarget "A peptide mass fingerprint search."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001082 ; owl:annotatedTarget "A sequence tag search."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001083 ; owl:annotatedTarget "An MS2 search (with fragment ions)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001084 ; owl:annotatedTarget "Non-redundant GenBank sequence database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001085 ; owl:annotatedTarget "Protein level information."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001086 ; owl:annotatedTarget "Sort order of SEQUEST search results by the correlation score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001087 ; owl:annotatedTarget "SEQUEST View / Process Input Parameters."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000090 ; owl:annotatedTarget "OBSOLETE A variation of instrument where a selected mass is scanned."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001088 ; owl:annotatedTarget "The protein description line from the sequence entry in the source database FASTA file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001089 ; owl:annotatedTarget "The taxonomy of the resultant molecule from the search."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001090 ; owl:annotatedTarget "OBSOLETE: The system used to indicate taxonomy. There should be an enumerated list of options: latin name, NCBI TaxID, common name, Swiss-Prot species ID (ex. RABIT from the full protein ID ALBU_RABIT)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001092 ; owl:annotatedTarget "Identification confidence metric for a peptide."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001093 ; owl:annotatedTarget "The percent coverage for the protein based upon the matched peptide sequences (can be calculated)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001094 ; owl:annotatedTarget "Sort order of SEQUEST search results given by the charge."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000091 ; owl:annotatedTarget "OBSOLETE Please see Single Ion Monitoring."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001096 ; owl:annotatedTarget "Specify \"percentage\" as value of the CVParam."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001097 ; owl:annotatedTarget "This counts distinct sequences hitting the protein without regard to a minimal confidence threshold."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001098 ; owl:annotatedTarget "This counts the number of distinct peptide sequences. Multiple charge states and multiple modification states do NOT count as multiple sequences. The definition of 'confident' must be qualified elsewhere."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001099 ; owl:annotatedTarget "The point of this entry is to define what is meant by confident for the term Confident distinct peptide sequence and/or Confident peptides. Example 1 - metric=Paragon:Confidence value=95 sense=greater than Example 2 - metric=Mascot:Eval value=0.05 sense=less than."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001100 ; owl:annotatedTarget "This counts the number of peptide sequences without regard to whether they are distinct. Multiple charges states and multiple modification states DO count as multiple peptides. The definition of 'confident' must be qualified elsewhere."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000092 ; owl:annotatedTarget "High to low direction in terms of m/z of the scan for scanning analyzers."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001101 ; owl:annotatedTarget "Protein group or subset relationships."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001104 ; owl:annotatedTarget "The name of the UniProtKB/Swiss-Prot knowledgebase."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001105 ; owl:annotatedTarget "Peptide level information."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001106 ; owl:annotatedTarget "Specify \"number\" as value of the CVParam."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001107 ; owl:annotatedTarget "Source file for this mzIdentML was a data set in a database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001108 ; owl:annotatedTarget "Parameter information, type of product: a ion with charge on the N-terminal side."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000093 ; owl:annotatedTarget "Low to high direction in terms of m/z of the scan for scanning analyzers."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001109 ; owl:annotatedTarget "Specify cull string as value of the CVParam."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001110 ; owl:annotatedTarget "SEQUEST Mode Input Parameters."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001112 ; owl:annotatedTarget "Residue preceding the first amino acid in the peptide sequence as it occurs in the protein. Use 'N-term' to denote if the peptide starts at the N terminus of the protein."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001113 ; owl:annotatedTarget "Residue following the last amino acid in the peptide sequence as it occurs in the protein. Use 'C-term' to denote if the peptide ends at the C terminus of the protein."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000094 ; owl:annotatedTarget "The mass scan is done in exponential mode."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001114 ; owl:annotatedTarget "OBSOLETE Retention time of the spectrum from the source file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001115 ; owl:annotatedTarget "OBSOLETE: use spectrumID attribute of SpectrumIdentificationResult. Take from mzData."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001116 ; owl:annotatedTarget "Results specific for one protein as part of a protein ambiguity group (a result not valid for all the other proteins in the protein ambiguity group)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001117 ; owl:annotatedTarget "The theoretical neutral mass of the molecule (e.g. the peptide sequence and its modifications) not including its charge carrier."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001118 ; owl:annotatedTarget "Parameter information, type of product: b ion with charge on the N-terminal side."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001119 ; owl:annotatedTarget "Parameter information, type of product: c ion with charge on the N-terminal side."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000095 ; owl:annotatedTarget "OBSOLETE The mass scan is done in linear mode."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001121 ; owl:annotatedTarget "The number of peaks that were matched as qualified by the ion series considered field. If a peak matches multiple ions then only 1 would be added the count."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001122 ; owl:annotatedTarget "The ion series that were used during the calculation of the count (e.g. a, b, c, d, v, w, x, y, z, a-H2O, a-NH3, b-H2O, b-NH3, y-H2O, y-NH3, b-H20, b+, z-, z+1, z+2, b-H3PO4, y-H3PO4, immonium, internal ya, internal yb)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001123 ; owl:annotatedTarget "The number of peaks from the original peak list that are used to calculate the scores for a particular search engine. All ions that have the opportunity to match or be counted even if they don't."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001124 ; owl:annotatedTarget "The number of peaks from the original peaks listed that were submitted to the search engine."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001125 ; owl:annotatedTarget "Result of quality estimation: decision of a manual validation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001127 ; owl:annotatedTarget "Accessions Containing Sequence - Accessions for each protein containing this peptide."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000096 ; owl:annotatedTarget "The mass scan is done in quadratic mode."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001128 ; owl:annotatedTarget "SEQUEST Select Input Parameters."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001129 ; owl:annotatedTarget "Quantification information."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001130 ; owl:annotatedTarget "OBSOLETE Peptide raw area."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001131 ; owl:annotatedTarget "Error on peptide area."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001132 ; owl:annotatedTarget "Peptide ratio."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000097 ; owl:annotatedTarget "OBSOLETE A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001133 ; owl:annotatedTarget "Error on peptide ratio."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001134 ; owl:annotatedTarget "Protein ratio."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001135 ; owl:annotatedTarget "Error on protein ratio."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001136 ; owl:annotatedTarget "OBSOLETE P-value (protein diff from 1 randomly)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001137 ; owl:annotatedTarget "Absolute quantity in terms of real concentration or molecule copy number in sample."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000098 ; owl:annotatedTarget "OBSOLETE Data acquired when monitoring the ion current of a few specific m/z values. Remap to MS:1000205 -Selected Ion Monitoring."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001138 ; owl:annotatedTarget "Error on absolute quantity."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001139 ; owl:annotatedTarget "Quantitation software name."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001140 ; owl:annotatedTarget "OBSOLETE Quantitation software version."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001141 ; owl:annotatedTarget "The intensity of the precursor ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001142 ; owl:annotatedTarget "International Protein Index database for Homo sapiens sequences."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001143 ; owl:annotatedTarget "Search engine specific peptide spectrum match scores."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001145 ; owl:annotatedTarget "SEQUEST Select Advanced Input Parameters."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001146 ; owl:annotatedTarget "Ion a-NH3 parameter information, type of product: a ion with lost ammonia."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001148 ; owl:annotatedTarget "Ion a-H2O if a significant and fragment includes STED."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000099 ; owl:annotatedTarget "OBSOLETE This term is not recommended. See Selected Reaction Monitoring."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001149 ; owl:annotatedTarget "Ion b-NH3 parameter information, type of product: b ion with lost ammonia."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001150 ; owl:annotatedTarget "Ion b-H2O if b significant and fragment includes STED."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001151 ; owl:annotatedTarget "Ion y-NH3 parameter information, type of product: y ion with lost ammonia."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001153 ; owl:annotatedTarget "Search engine specific scores."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001154 ; owl:annotatedTarget "The SEQUEST result 'Probability'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001155 ; owl:annotatedTarget "The SEQUEST result 'XCorr'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000100 ; owl:annotatedTarget "OBSOLETE The specific scan function or process that will record a precursor ion spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001156 ; owl:annotatedTarget "The SEQUEST result 'DeltaCn'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001157 ; owl:annotatedTarget "The SEQUEST result 'Sp' (protein)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001159 ; owl:annotatedTarget "The SEQUEST result 'Expectation value'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001160 ; owl:annotatedTarget "The SEQUEST result 'Sf'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001161 ; owl:annotatedTarget "The SEQUEST result 'Matched Ions'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000101 ; owl:annotatedTarget "OBSOLETE The specific scan function or process that records product ion spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001162 ; owl:annotatedTarget "The SEQUEST result 'Total Ions'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001163 ; owl:annotatedTarget "The SEQUEST result 'Consensus Score'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001164 ; owl:annotatedTarget "The Paragon result 'Unused ProtScore'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001165 ; owl:annotatedTarget "The Paragon result 'Total ProtScore'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001166 ; owl:annotatedTarget "The Paragon result 'Score'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000006 ; owl:annotatedTarget "Concentration of sample in picomol/ul, femtomol/ul or attomol/ul solution used."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000102 ; owl:annotatedTarget "OBSOLETE The operation of a mass spectrometer to monitor a single ion rather than scanning entire mass spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001167 ; owl:annotatedTarget "The Paragon result 'Confidence'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001168 ; owl:annotatedTarget "The Paragon result 'Expression Error Factor'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001169 ; owl:annotatedTarget "The Paragon result 'Expression change P-value'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001170 ; owl:annotatedTarget "The Paragon result 'Contrib'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001171 ; owl:annotatedTarget "The Mascot result 'Score'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000103 ; owl:annotatedTarget "OBSOLETE This term is not recommended. See Selected Reaction Monitoring."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001172 ; owl:annotatedTarget "The Mascot result 'expectation value'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001173 ; owl:annotatedTarget "The Mascot result 'Matched ions'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001174 ; owl:annotatedTarget "The Mascot result 'Total ions'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001175 ; owl:annotatedTarget "A peptide matching multiple proteins."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001176 ; owl:annotatedTarget "Regular expression for Trypsin."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001177 ; owl:annotatedTarget "Number of Molecular Hypothesis Considered - This is the number of molecules (e.g. peptides for proteomics) considered for a particular search."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000104 ; owl:annotatedTarget "OBSOLETE None."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001178 ; owl:annotatedTarget "Expressed sequence tag nucleotide sequence database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001180 ; owl:annotatedTarget "Regular expressions for cleavage enzymes."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001184 ; owl:annotatedTarget "The details of the actual run of the search."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001189 ; owl:annotatedTarget "As parameter for search engine: apply the modification only at the N-terminus of a peptide."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001190 ; owl:annotatedTarget "As parameter for search engine: apply the modification only at the C-terminus of a peptide."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001191 ; owl:annotatedTarget "OBSOLETE Quality estimation by p-value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001192 ; owl:annotatedTarget "Result of quality estimation: Expect value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000105 ; owl:annotatedTarget "Reflectron is off."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001193 ; owl:annotatedTarget "Result of quality estimation: confidence score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001194 ; owl:annotatedTarget "Quality estimation by decoy database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001195 ; owl:annotatedTarget "Decoy type: Amino acids of protein sequences are used in reverse order."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001196 ; owl:annotatedTarget "Decoy type: Amino acids of protein sequences are randomized (keeping the original protein mass)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001197 ; owl:annotatedTarget "Decoy database composition: database contains original (target) and decoy entries."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001198 ; owl:annotatedTarget "Identification confidence metric for a protein."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001199 ; owl:annotatedTarget "Source file for this mzIdentML was in Mascot DAT file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001200 ; owl:annotatedTarget "Source file for this mzIdentML was in SEQUEST out file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000106 ; owl:annotatedTarget "Reflectron is on."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001201 ; owl:annotatedTarget "Maximum value of molecular weight filter."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001202 ; owl:annotatedTarget "Minimum value of molecular weight filter."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001203 ; owl:annotatedTarget "Maximum value of isoelectric point filter."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000107 ; owl:annotatedTarget "A horn-shaped (or cone-shaped) continuous dynode particle multiplier. The ion strikes the inner surface of the device and induces the production of secondary electrons that in turn impinge on the inner surfaces to produce more secondary electrons. This avalanche effect produces an increase in signal in the final measured current pulse."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001204 ; owl:annotatedTarget "Minimum value of isoelectric point filter."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001207 ; owl:annotatedTarget "The name of the Mascot search engine."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001208 ; owl:annotatedTarget "The name of the SEQUEST search engine."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001209 ; owl:annotatedTarget "The name of the Phenyx search engine."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001210 ; owl:annotatedTarget "The type of mass difference value to be considered by the search engine (monoisotopic or average)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001211 ; owl:annotatedTarget "Mass type setting for parent mass was monoisotopic."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001212 ; owl:annotatedTarget "Mass type setting for parent mass was average isotopic."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001213 ; owl:annotatedTarget "OBSOLETE: Scores and global result characteristics."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000108 ; owl:annotatedTarget "A surface that is held at high potential so that ions striking the surface produce electrons that are subsequently detected."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001214 ; owl:annotatedTarget "Estimation of the global false discovery rate of proteins."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001215 ; owl:annotatedTarget "The SEQUEST result 'Sp' in out file (peptide)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001217 ; owl:annotatedTarget "The SEQUEST result 'Sp' of 'Rank/Sp' in out file (peptide). Also called 'rsp'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001218 ; owl:annotatedTarget "The SEQUEST result '#' in out file (peptide)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001219 ; owl:annotatedTarget "The SEQUEST result 'Id#' in out file (peptide)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000109 ; owl:annotatedTarget "A detector in which ions strike a conversion dynode to produce electrons that in turn generate photons through a phosphorescent screen that are detected by a photomultiplier."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001220 ; owl:annotatedTarget "Fragmentation information, type of product: y ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001221 ; owl:annotatedTarget "Fragmentation information like ion types."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001222 ; owl:annotatedTarget "Fragmentation information, type of product: b ion without water."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001223 ; owl:annotatedTarget "Fragmentation information, type of product: y ion without water."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001224 ; owl:annotatedTarget "Fragmentation information, type of product: b ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001225 ; owl:annotatedTarget "The m/z of the product ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000110 ; owl:annotatedTarget "Detector consisting of a conversion dynode, scintillator and photomultiplier. The metal knob at high potential emits secondary electrons when ions impinge on the surface. The secondary electrons are accelerated onto the scintillator that produces light that is then detected by the photomultiplier detector."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001226 ; owl:annotatedTarget "The intensity of a single product ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001227 ; owl:annotatedTarget "The product ion m/z error."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001228 ; owl:annotatedTarget "Fragmentation information, type of product: x ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001229 ; owl:annotatedTarget "Fragmentation information, type of product: a ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001230 ; owl:annotatedTarget "Fragmentation information, type of product: z ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001231 ; owl:annotatedTarget "Fragmentation information, type of product: c ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001232 ; owl:annotatedTarget "Ion b-NH3 fragmentation information, type of product: b ion without ammonia."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000111 ; owl:annotatedTarget "A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001233 ; owl:annotatedTarget "Ion y-NH3 fragmentation information, type of product: y ion without ammonia."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001234 ; owl:annotatedTarget "Fragmentation information, type of product: a ion without water."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001235 ; owl:annotatedTarget "Ion a-NH3 fragmentation information, type of product: a ion without ammonia."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001236 ; owl:annotatedTarget "Fragmentation information, type of product: d ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001237 ; owl:annotatedTarget "Fragmentation information, type of product: v ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001238 ; owl:annotatedTarget "Fragmentation information, type of product: w ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001239 ; owl:annotatedTarget "Fragmentation information, type of product: immonium ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001240 ; owl:annotatedTarget "Non-identified ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001241 ; owl:annotatedTarget "Co-eluting ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001242 ; owl:annotatedTarget "Source file for this mzIdentML was a SEQUEST folder with its out files."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000112 ; owl:annotatedTarget "A conducting cup or chamber that intercepts a charged particle beam and is electrically connected to a current measuring device."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001243 ; owl:annotatedTarget "Source file for this mzIdentML was a SEQUEST summary page (proteins)."^^xsd:string . [] oboInOwl:hasDbXref "http://www.matrixscience.com/help/data_file_help.html#PKS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001245 ; owl:annotatedTarget "PerSeptive peak list file format."^^xsd:string . [] oboInOwl:hasDbXref "http://www.matrixscience.com/help/data_file_help.html#API"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001246 ; owl:annotatedTarget "PE SCIEX peak list file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001247 ; owl:annotatedTarget "Bruker data exchange XML format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001249 ; owl:annotatedTarget "Details describing the search input."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001250 ; owl:annotatedTarget "Result of quality estimation: the local FDR at the current position of a sorted list."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001251 ; owl:annotatedTarget "Enzyme trypsin."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000113 ; owl:annotatedTarget "An array of detectors for spatially disperse ion beams in which all ions simultaneously impinge on the detector plane."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001252 ; owl:annotatedTarget "Database source EBI."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001253 ; owl:annotatedTarget "Database source NCBI."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001254 ; owl:annotatedTarget "Database source UniProt."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001255 ; owl:annotatedTarget "Mass type setting for fragment mass was average isotopic."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001256 ; owl:annotatedTarget "Mass type setting for fragment mass was monoisotopic."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001257 ; owl:annotatedTarget "Parameter information, type of product: side chain loss v ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001258 ; owl:annotatedTarget "Parameter information, type of product: side chain loss d ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001259 ; owl:annotatedTarget "Parameter information, type of product: immonium ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001260 ; owl:annotatedTarget "Parameter information, type of product: side chain loss w ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001261 ; owl:annotatedTarget "Parameter information, type of product: x ion with charge on the C-terminal side."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000114 ; owl:annotatedTarget "A thin plate that contains a closely spaced array of channels that each act as a continuous dynode particle multiplier. A charged particle, fast neutral particle, or photon striking the plate causes a cascade of secondary electrons that ultimately exits the opposite side of the plate."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001262 ; owl:annotatedTarget "Parameter information, type of product: y ion with charge on the C-terminal side."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001263 ; owl:annotatedTarget "Parameter information, type of product: z ion with charge on the C-terminal side."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001266 ; owl:annotatedTarget "Role of a Person or Organization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001267 ; owl:annotatedTarget "Software vendor role."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001268 ; owl:annotatedTarget "Programmer role."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001269 ; owl:annotatedTarget "Instrument vendor role."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001270 ; owl:annotatedTarget "Lab personnel role."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000115 ; owl:annotatedTarget "A detector system commonly used in inductively coupled plasma mass spectrometers."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001271 ; owl:annotatedTarget "Researcher role."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001272 ; owl:annotatedTarget "Regular expression for Arg-C."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001273 ; owl:annotatedTarget "Regular expression for Asp-N."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001274 ; owl:annotatedTarget "Regular expression for Asp-N-ambic."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001275 ; owl:annotatedTarget "Source data for this mzIdentML was a ProteinScape SearchEvent."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001276 ; owl:annotatedTarget "Source data for this mzIdentML was a ProteinScape Gel."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001283 ; owl:annotatedTarget "Specify the regular expression for decoy accession numbers."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001284 ; owl:annotatedTarget "OBSOLETE The name of the database, the search database was derived from."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001285 ; owl:annotatedTarget "International Protein Index database for Mus musculus sequences."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000116 ; owl:annotatedTarget "A detector for conversion of the ion/electron signal into photon(s) which are then amplified and detected."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001286 ; owl:annotatedTarget "International Protein Index database for Rattus norvegicus sequences."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001287 ; owl:annotatedTarget "International Protein Index database for Danio rerio sequences."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001288 ; owl:annotatedTarget "International Protein Index database for Gallus gallus sequences."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001289 ; owl:annotatedTarget "International Protein Index database for Bos taurus sequences."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001290 ; owl:annotatedTarget "International Protein Index database for Arabidopsis thaliana sequences."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001291 ; owl:annotatedTarget "OBSOLETE Decoy database from a non-redundant GenBank sequence database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001292 ; owl:annotatedTarget "OBSOLETE Decoy database from a International Protein Index database for Rattus norvegicus."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001293 ; owl:annotatedTarget "OBSOLETE Decoy database from a International Protein Index database for Mus musculus."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001294 ; owl:annotatedTarget "OBSOLETE Decoy database from a International Protein Index database for Arabidopsis thaliana."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001295 ; owl:annotatedTarget "OBSOLETE Decoy database from an expressed sequence tag nucleotide sequence database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000117 ; owl:annotatedTarget "Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an electronic integrated circuit (i/c) that converts continuous signals to discrete digital numbers."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001296 ; owl:annotatedTarget "OBSOLETE Decoy database from a International Protein Index database for Danio rerio."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001297 ; owl:annotatedTarget "OBSOLETE Decoy database from a Swiss-Prot protein sequence database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001298 ; owl:annotatedTarget "OBSOLETE Decoy database from a International Protein Index database for Gallus gallus."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001299 ; owl:annotatedTarget "OBSOLETE Decoy database from a International Protein Index database for Bos taurus."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001300 ; owl:annotatedTarget "OBSOLETE Decoy database from a International Protein Index database for Homo sapiens."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001301 ; owl:annotatedTarget "The rank of the protein in a list sorted by the search engine."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001302 ; owl:annotatedTarget "Search engine specific input parameters."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001303 ; owl:annotatedTarget "Endoproteinase Arg-C."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000118 ; owl:annotatedTarget "Definition to do."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001304 ; owl:annotatedTarget "Endoproteinase Asp-N."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001305 ; owl:annotatedTarget "Enzyme Asp-N, Ammonium Bicarbonate (AmBic)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001306 ; owl:annotatedTarget "Enzyme chymotrypsin."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001307 ; owl:annotatedTarget "Cyanogen bromide."^^xsd:string . [] oboInOwl:hasDbXref "PubChem_Compound:284"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001308 ; owl:annotatedTarget "Formic acid."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000119 ; owl:annotatedTarget "A device for converting a signal of sporadic pluses into a digital representation of their time indices."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001309 ; owl:annotatedTarget "Endoproteinase Lys-C."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001310 ; owl:annotatedTarget "Proteinase Lys-C/P."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001311 ; owl:annotatedTarget "PepsinA proteinase."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001312 ; owl:annotatedTarget "Cleavage agent TrypChymo."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001313 ; owl:annotatedTarget "Cleavage agent Trypsin/P."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000120 ; owl:annotatedTarget "A detector acquisition mode used for detecting transient signals."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001314 ; owl:annotatedTarget "Cleavage agent V8-DE."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001315 ; owl:annotatedTarget "Cleavage agent V8-E."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001316 ; owl:annotatedTarget "Significance threshold below which the p-value of a peptide match must lie to be considered statistically significant (default 0.05)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001317 ; owl:annotatedTarget "The number of protein hits to display in the report. If 'Auto', all protein hits that have a protein score exceeding the average peptide identity threshold are reported. Otherwise an integer at least 1."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001318 ; owl:annotatedTarget "Mascot protein scoring method; either 'Standard' or 'MudPIT'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000121 ; owl:annotatedTarget "The brand of instruments from the joint venture between Applied Biosystems and MDS Analytical Technologies (formerly MDS SCIEX). Previously branded as \"Applied Biosystems|MDS SCIEX\"."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001319 ; owl:annotatedTarget "Mascot peptide match ion score threshold. If between 0 and 1, then peptide matches whose expect value exceeds the thresholds are suppressed; if at least 1, then peptide matches whose ion score is below the threshold are suppressed."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001320 ; owl:annotatedTarget "If true, show (sequence or spectrum) same-set proteins. Otherwise they are suppressed."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001321 ; owl:annotatedTarget "If true, show (sequence or spectrum) sub-set and subsumable proteins. Otherwise they are suppressed."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001322 ; owl:annotatedTarget "Only used in Peptide Summary and Select Summary reports. If true, a peptide match must be 'bold red' to be included in the report; bold red means the peptide is a top ranking match in a query and appears for the first time (in linear order) in the list of protein hits."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001323 ; owl:annotatedTarget "If true, then the search results are against a nucleic acid database and Unigene clustering is enabled. Otherwise UniGene clustering is not in use."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000007 ; owl:annotatedTarget "The nature of the sample inlet."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000122 ; owl:annotatedTarget "Bruker Daltonics' instrument model."^^xsd:string . [] oboInOwl:hasDbXref "http://www.matrixscience.com/help/error_tolerant_help.html"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001324 ; owl:annotatedTarget "If true, then the search results are error tolerant and peptide matches from the second pass are included in search results. Otherwise no error tolerant peptide matches are included."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001325 ; owl:annotatedTarget "If true, then the search results are against an automatically generated decoy database and the reported peptide matches and protein hits come from the decoy database. Otherwise peptide matches and protein hits come from the original database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001326 ; owl:annotatedTarget "OBSOLETE."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001328 ; owl:annotatedTarget "OMSSA E-value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001329 ; owl:annotatedTarget "OMSSA p-value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000123 ; owl:annotatedTarget "IonSpec corporation instrument model."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001330 ; owl:annotatedTarget "The X!Tandem expectation value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001331 ; owl:annotatedTarget "The X!Tandem hyperscore."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001332 ; owl:annotatedTarget "Regular expression for Chymotrypsin."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001333 ; owl:annotatedTarget "Regular expression for CNBr."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001334 ; owl:annotatedTarget "Regular expression for formic acid."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001335 ; owl:annotatedTarget "Regular expression for Lys-C."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001336 ; owl:annotatedTarget "Regular expression for Lys-C/P."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001337 ; owl:annotatedTarget "Regular expression for PepsinA."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001338 ; owl:annotatedTarget "Regular expression for TrypChymo."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000124 ; owl:annotatedTarget "Shimadzu corporation instrument model."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001339 ; owl:annotatedTarget "Regular expression for Trypsin/P."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001340 ; owl:annotatedTarget "Regular expression for V8-DE."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001341 ; owl:annotatedTarget "Regular expression for V8-E."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001342 ; owl:annotatedTarget "Details about a single database sequence."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001343 ; owl:annotatedTarget "The sequence is a nucleic acid sequence."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001344 ; owl:annotatedTarget "The sequence is a amino acid sequence."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001345 ; owl:annotatedTarget "Children of this term specify the source of the mass table used."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001346 ; owl:annotatedTarget "The masses used in the mass table are taken from AAIndex."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001347 ; owl:annotatedTarget "The children of this term define file formats of the sequence database used."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001348 ; owl:annotatedTarget "The sequence database was stored in the FASTA format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000125 ; owl:annotatedTarget "ThermoFinnigan from Thermo Electron Corporation instrument model."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001349 ; owl:annotatedTarget "The sequence database was stored in the Abstract Syntax Notation 1 format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001350 ; owl:annotatedTarget "The sequence database was stored in the NCBI formatdb (*.p*) format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001351 ; owl:annotatedTarget "ClustalW ALN (multiple alignment) format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001352 ; owl:annotatedTarget "EMBL entry format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001353 ; owl:annotatedTarget "The NBRF PIR was used as format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001354 ; owl:annotatedTarget "Root node for options for the mass table used."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001355 ; owl:annotatedTarget "Descriptions of peptides."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001356 ; owl:annotatedTarget "Descriptions of the input spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001357 ; owl:annotatedTarget "Description of the quality of the input spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000126 ; owl:annotatedTarget "Waters Corporation instrument model."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001358 ; owl:annotatedTarget "This term reports the quality of the spectrum assigned by msmsEval."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001359 ; owl:annotatedTarget "Children of this term describe ambiguous residues."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001360 ; owl:annotatedTarget "List of standard residue one letter codes which are used to replace a non-standard."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001361 ; owl:annotatedTarget "List of masses a non-standard letter code is replaced with."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000127 ; owl:annotatedTarget "Processing of profile data to produce spectra that contains discrete peaks of zero width. Often used to reduce the size of dataset."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001362 ; owl:annotatedTarget "The number of unmatched peaks."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001363 ; owl:annotatedTarget "A peptide matching only one."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001364 ; owl:annotatedTarget "Estimation of the global false discovery rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001365 ; owl:annotatedTarget "Fragmentation information, type of product: internal yb ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001366 ; owl:annotatedTarget "Fragmentation information, type of product: internal ya ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001367 ; owl:annotatedTarget "Fragmentation information, type of product: z+1 ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001368 ; owl:annotatedTarget "Fragmentation information, type of product: z+2 ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001369 ; owl:annotatedTarget "Simple text file format of \"m/z [intensity]\" values for a PMF (or single MS2) search."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000128 ; owl:annotatedTarget "A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001370 ; owl:annotatedTarget "The Mascot result 'homology threshold'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001371 ; owl:annotatedTarget "The Mascot result 'identity threshold'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001373 ; owl:annotatedTarget "SEQUEST total ion current."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001375 ; owl:annotatedTarget "The instrument type parameter value in Phenyx."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000129 ; owl:annotatedTarget "Polarity of the scan is negative."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001376 ; owl:annotatedTarget "The selected scoring model in Phenyx."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001377 ; owl:annotatedTarget "The default parent charge value in Phenyx."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001378 ; owl:annotatedTarget "The parameter in Phenyx that specifies if the experimental charge state is to be considered as correct."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001379 ; owl:annotatedTarget "The turbo mode parameter in Phenyx."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001380 ; owl:annotatedTarget "The maximal allowed fragment m/z error filter considered in the turbo mode of Phenyx."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000130 ; owl:annotatedTarget "Polarity of the scan is positive."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001381 ; owl:annotatedTarget "The minimal peptide sequence coverage value, expressed in percent, considered in the turbo mode of Phenyx."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001382 ; owl:annotatedTarget "The list of ion series considered in the turbo mode of Phenyx."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001383 ; owl:annotatedTarget "The minimal number of residues for a peptide to be considered for a valid identification in Phenyx."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001384 ; owl:annotatedTarget "The minimal peptide z-score for a peptide to be considered for a valid identification in Phenyx."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001385 ; owl:annotatedTarget "The maximal peptide p-value for a peptide to be considered for a valid identification in Phenyx."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000131 ; owl:annotatedTarget "The number of counted events observed in one or a group of elements of a detector."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001386 ; owl:annotatedTarget "The minimal protein score required for a protein database entry to be displayed in the list of identified proteins in Phenyx."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001387 ; owl:annotatedTarget "The parameter in Phenyx that specifies if the conflict resolution algorithm is to be used."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001388 ; owl:annotatedTarget "The primary sequence database identifier of a protein in Phenyx."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001389 ; owl:annotatedTarget "A secondary sequence database identifier of a protein in Phenyx."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001390 ; owl:annotatedTarget "The protein score of a protein match in Phenyx."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001391 ; owl:annotatedTarget "First number of phenyx result \"#Peptides\"."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001392 ; owl:annotatedTarget "Second number of phenyx result \"#Peptides\"."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001393 ; owl:annotatedTarget "The value of the automatic peptide acceptance filter in Phenyx."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001394 ; owl:annotatedTarget "The value of the user-defined peptide acceptance filter in Phenyx."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001395 ; owl:annotatedTarget "The z-score value of a peptide sequence match in Phenyx."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000132 ; owl:annotatedTarget "The magnitude of a peak or measurement element expressed in terms of the percentage of the magnitude of the base peak intensity."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001396 ; owl:annotatedTarget "The p-value of a peptide sequence match in Phenyx."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001397 ; owl:annotatedTarget "The number of missed cleavages of a peptide sequence in Phenyx."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001398 ; owl:annotatedTarget "The expression of the nature and position(s) of modified residue(s) on a matched peptide sequence in Phenyx."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001399 ; owl:annotatedTarget "Source file for this mzIdentML was in OMSSA csv file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001400 ; owl:annotatedTarget "Source file for this mzIdentML was in OMSSA xml file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001401 ; owl:annotatedTarget "Source file for this mzIdentML was in X!Tandem xml file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000133 ; owl:annotatedTarget "The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001405 ; owl:annotatedTarget "This subsection describes terms which can describe details of spectrum identification results."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001406 ; owl:annotatedTarget "Parameter information, type of product: internal yb ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001407 ; owl:annotatedTarget "Parameter information, type of product: internal ya ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001408 ; owl:annotatedTarget "Parameter information, type of product: z+1 ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001409 ; owl:annotatedTarget "Parameter information, type of product: z+2 ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001410 ; owl:annotatedTarget "The translation start codons used to translate the nucleotides to amino acids."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001411 ; owl:annotatedTarget "Specification of the search tolerance."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000134 ; owl:annotatedTarget "The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001414 ; owl:annotatedTarget "OBSOLETE: replaced by MS:1000797 (peak list scans): This term can hold the scans attribute from an MGF input file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000135 ; owl:annotatedTarget "A technique specific to reflectron time-of-flight mass spectrometers where product ions of metastable transitions or collision-induced dissociations generated in the drift tube prior to entering the reflectron are m/z separated to yield product ion spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001415 ; owl:annotatedTarget "OBSOLETE: replaced by MS:1000798 (peak list raw scans): This term can hold the raw scans attribute from an MGF input file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001416 ; owl:annotatedTarget "OBSOLETE: replaced by MS:1000796 (spectrum title): Holds the spectrum title from different input file formats, e.g. MGF TITLE."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001417 ; owl:annotatedTarget "SpectraST dot product of two spectra, measuring spectral similarity."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001418 ; owl:annotatedTarget "SpectraST measure of how much of the dot product is dominated by a few peaks."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001419 ; owl:annotatedTarget "SpectraST spectrum score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000136 ; owl:annotatedTarget "Fragmentation that results from the collision of an ion with a surface."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001420 ; owl:annotatedTarget "SpectraST normalised difference between dot product of top hit and runner-up."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001421 ; owl:annotatedTarget "The XML-based pepXML file format for encoding PSM information, created and maintained by the Trans-Proteomic Pipeline developers."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001422 ; owl:annotatedTarget "The XML-based protXML file format for encoding protein identifications, created and maintained by the Trans-Proteomic Pipeline developers."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001423 ; owl:annotatedTarget "A URL that describes the translation table used to translate the nucleotides to amino acids."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001424 ; owl:annotatedTarget "Name of the used method in the ProteinExtractor algorithm."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001425 ; owl:annotatedTarget "Flag indicating if a non redundant scoring should be generated."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000137 ; owl:annotatedTarget "OBSOLETE A non-SI unit of energy (eV) defined as the energy acquired by a particle containing one unit of charge through a potential difference of one volt. An electron-volt is equal to 1.602 176 53(14) x 10^-19 J."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001426 ; owl:annotatedTarget "Flag indicating if identified proteins should be included."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001427 ; owl:annotatedTarget "The maximum number of proteins to consider."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001428 ; owl:annotatedTarget "The maximum considered mass for a protein."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001429 ; owl:annotatedTarget "The minimum number of proteins to consider."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001430 ; owl:annotatedTarget "Flag indicating to include Mascot scoring for calculation of the ProteinExtractor meta score."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.4172/jpb.1000056"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001431 ; owl:annotatedTarget "Only peptides with scores higher than that threshold are taken into account in Mascot scoring for calculation of the ProteinExtractor meta score."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.4172/jpb.1000056"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001432 ; owl:annotatedTarget "In the final result each protein must have at least one peptide above this Mascot score threshold in ProteinExtractor meta score calculation."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.4172/jpb.1000056"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001434 ; owl:annotatedTarget "Influence of Mascot search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001435 ; owl:annotatedTarget "Flag indicating to include SEQUEST scoring for calculation of the ProteinExtractor meta score."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.4172/jpb.1000056"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001436 ; owl:annotatedTarget "Only peptides with scores higher than that threshold are taken into account in SEQUEST scoring for calculation of the ProteinExtractor meta score."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.4172/jpb.1000056"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001437 ; owl:annotatedTarget "In the final result each protein must have at least one peptide above this SEQUEST score threshold in ProteinExtractor meta score calculation."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.4172/jpb.1000056"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001438 ; owl:annotatedTarget "Influence of SEQUEST search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001439 ; owl:annotatedTarget "Flag indicating to include ProteinSolver scoring for calculation of the ProteinExtractor meta score."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.4172/jpb.1000056"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001440 ; owl:annotatedTarget "Only peptides with scores higher than that threshold are taken into account in ProteinSolver scoring for calculation of the ProteinExtractor meta score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000138 ; owl:annotatedTarget "Instrument setting, expressed in percent, for adjusting collisional energies of ions in an effort to provide equivalent excitation of all ions."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.4172/jpb.1000056"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001441 ; owl:annotatedTarget "In the final result each protein must have at least one peptide above this ProteinSolver score threshold in ProteinExtractor meta score calculation."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.4172/jpb.1000056"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001442 ; owl:annotatedTarget "Influence of ProteinSolver search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001443 ; owl:annotatedTarget "Flag indicating to include Phenyx scoring for calculation of the ProteinExtractor meta score."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.4172/jpb.1000056"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001444 ; owl:annotatedTarget "Only peptides with scores higher than that threshold are taken into account in Phenyx scoring for calculation of the ProteinExtractor meta score."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.4172/jpb.1000056"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001445 ; owl:annotatedTarget "In the final result each protein must have at least one peptide above this Phenyx score threshold in ProteinExtractor meta score calculation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000008 ; owl:annotatedTarget "The method by which gas phase ions are generated from the sample."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000139 ; owl:annotatedTarget "Applied Biosystems/MDS SCIEX Q 4000 TRAP MS."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.4172/jpb.1000056"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001446 ; owl:annotatedTarget "Influence of Phenyx search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001447 ; owl:annotatedTarget "False-discovery rate threshold for proteins."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001448 ; owl:annotatedTarget "False-discovery rate threshold for peptides."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001449 ; owl:annotatedTarget "Threshold for OMSSA e-value for quality estimation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001450 ; owl:annotatedTarget "Details of decoy generation and database structure."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001451 ; owl:annotatedTarget "Name of algorithm used for decoy generation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000140 ; owl:annotatedTarget "Applied Biosystems/MDS SCIEX 4700 Proteomics Analyzer MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001452 ; owl:annotatedTarget "Decoy type: Amino acids of protein sequences are used in a random order."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001453 ; owl:annotatedTarget "Decoy database composition: database contains only decoy entries."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001454 ; owl:annotatedTarget "Decoy entries are generated during the search, not explicitly stored in a database (like Mascot Decoy)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001455 ; owl:annotatedTarget "Acquisition software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001456 ; owl:annotatedTarget "Analysis software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001457 ; owl:annotatedTarget "Data processing software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001458 ; owl:annotatedTarget "Vocabularies describing the spectrum generation information."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001459 ; owl:annotatedTarget "Format of data files."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000141 ; owl:annotatedTarget "Bruker Daltonics' apex IV: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001460 ; owl:annotatedTarget "This term should be given if the modification was unknown."^^xsd:string . [] oboInOwl:hasDbXref "http://greylag.org/"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001461 ; owl:annotatedTarget "Greylag identification software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001462 ; owl:annotatedTarget "The sequence database was stored in the PEFF (PSI enhanced FastA file) format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001463 ; owl:annotatedTarget "Phenyx open XML file format."^^xsd:string . [] oboInOwl:hasDbXref "PMID:12643522"^^xsd:string, "http://www.scripps.edu/cravatt/protomap/dtaselect_instructions.html"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001464 ; owl:annotatedTarget "DTASelect file format."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1002/rcm.1603"^^xsd:string, "PMID:15317041"^^xsd:string, "http://fields.scripps.edu/sequest/SQTFormat.html"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001466 ; owl:annotatedTarget "MS2 file format for MS2 spectral data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001467 ; owl:annotatedTarget "This term is used if a NCBI TaxID is specified, e.g. 9606 for Homo sapiens."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001468 ; owl:annotatedTarget "This term is used if a common name is specified, e.g. human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000142 ; owl:annotatedTarget "Bruker Daltonics' apex Q: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001469 ; owl:annotatedTarget "This term is used if a scientific name is specified, e.g. Homo sapiens. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001470 ; owl:annotatedTarget "This term is used if a swiss prot taxonomy id is specified, e.g. Human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001471 ; owl:annotatedTarget "The children of this term can be used to describe modifications."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001472 ; owl:annotatedTarget "Representation of an array of the measurements of a selectively monitored ion versus time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001473 ; owl:annotatedTarget "Representation of an array of the measurements of a selectively monitored reaction versus time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001474 ; owl:annotatedTarget "OBSOLETE Representation of an array of the measurements of a series of monitored reactions versus time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001475 ; owl:annotatedTarget "Open Mass Spectrometry Search Algorithm was used to analyze the spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000143 ; owl:annotatedTarget "Applied Biosystems/MDS SCIEX API 150EX MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001476 ; owl:annotatedTarget "X!Tandem was used to analyze the spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001477 ; owl:annotatedTarget "Open-source software for mass spectral library creation and searching, developed at the Institute for Systems Biology and the Hong Kong University of Science and Technology. Part of the Trans-Proteomic Pipeline."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001478 ; owl:annotatedTarget "Mascot Parser was used to analyze the spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001479 ; owl:annotatedTarget "Sequence of zero or more non-zero ASCII characters terminated by a single null (0) byte."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001480 ; owl:annotatedTarget "Native format defined by jobRun=xsd:nonNegativeInteger spotLabel=xsd:string spectrum=xsd:nonNegativeInteger."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001481 ; owl:annotatedTarget "Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001482 ; owl:annotatedTarget "SCIEX 5800 TOF-TOF Analyzer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001483 ; owl:annotatedTarget "SCIEX or Applied Biosystems software for TOF/TOF data acquisition and analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001484 ; owl:annotatedTarget "Normalization of data point intensities."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001485 ; owl:annotatedTarget "Calibration of data point m/z positions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000144 ; owl:annotatedTarget "Applied Biosystems/MDS SCIEX API 150EX Prep MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001486 ; owl:annotatedTarget "Filtering out part of the data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001487 ; owl:annotatedTarget "An algorithm for protein determination/assembly integrated into Bruker's ProteinScape."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001488 ; owl:annotatedTarget "Mascot Distiller."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001489 ; owl:annotatedTarget "Mascot Integra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001490 ; owl:annotatedTarget "Percolator."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001491 ; owl:annotatedTarget "Percolator:Q value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001492 ; owl:annotatedTarget "Percolator:score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000145 ; owl:annotatedTarget "Applied Biosystems/MDS SCIEX API 2000 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001493 ; owl:annotatedTarget "Posterior error probability."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001494 ; owl:annotatedTarget "In case no threshold was used."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001495 ; owl:annotatedTarget "The SearchResultId of this peptide as SearchResult in the ProteinScape database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001496 ; owl:annotatedTarget "The SearchEventId of the SearchEvent in the ProteinScape database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001497 ; owl:annotatedTarget "The Profound probability score stored by ProteinScape."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001498 ; owl:annotatedTarget "The Profound z value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000146 ; owl:annotatedTarget "Applied Biosystems/MDS SCIEX API 3000 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001499 ; owl:annotatedTarget "The Profound cluster score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001500 ; owl:annotatedTarget "The Profound cluster rank."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001501 ; owl:annotatedTarget "The MSFit Mowse score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001502 ; owl:annotatedTarget "The Sonar score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001503 ; owl:annotatedTarget "The ProteinSolver exp value stored by ProteinScape."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000147 ; owl:annotatedTarget "Applied Biosystems/MDS SCIEX API 4000 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001504 ; owl:annotatedTarget "The ProteinSolver score stored by ProteinScape."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001505 ; owl:annotatedTarget "The intensity coverage of the identified peaks in the spectrum calculated by ProteinScape."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001506 ; owl:annotatedTarget "The SEQUEST meta score calculated by ProteinScape from the original SEQUEST scores."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001507 ; owl:annotatedTarget "The score calculated by ProteinExtractor."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001508 ; owl:annotatedTarget "Native format defined by scanId=xsd:nonNegativeInteger."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001509 ; owl:annotatedTarget "A data file format found in an Agilent MassHunter directory which contains raw data acquired by an Agilent mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000148 ; owl:annotatedTarget "Bruker Daltonics' autoflex II: MALDI TOF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001510 ; owl:annotatedTarget "TSQ Vantage."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001511 ; owl:annotatedTarget "Filter types which are used to filter a sequence database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001512 ; owl:annotatedTarget "Sequence database filters which actually can contains values, e.g. to limit PI value of the sequences used to search."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001513 ; owl:annotatedTarget "DB sequence filter pattern."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001514 ; owl:annotatedTarget "DB accession filter string."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001515 ; owl:annotatedTarget "Fragmentation information, type of product: c ion without water."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001516 ; owl:annotatedTarget "Fragmentation information, type of product: c ion without ammonia."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001517 ; owl:annotatedTarget "Fragmentation information, type of product: z ion without water."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000009 ; owl:annotatedTarget "OBSOLETE Whether positive or negative ions are selected for analysis by the spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000149 ; owl:annotatedTarget "Bruker Daltonics' autoflex TOF/TOF MS: MALDI TOF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001518 ; owl:annotatedTarget "Fragmentation information, type of product: z ion without ammonia."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001519 ; owl:annotatedTarget "Fragmentation information, type of product: x ion without water."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001520 ; owl:annotatedTarget "Fragmentation information, type of product: x ion without ammonia."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001521 ; owl:annotatedTarget "Fragmentation information, type of product: precursor ion without water."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001522 ; owl:annotatedTarget "Fragmentation information, type of product: precursor ion without ammonia."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001523 ; owl:annotatedTarget "Fragmentation information, type of product: precursor ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001524 ; owl:annotatedTarget "This term can describe a neutral loss m/z value that is lost from an ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000150 ; owl:annotatedTarget "Waters magnetic sector based AutoSpec Ultima NT MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001525 ; owl:annotatedTarget "This term can describe a neutral loss m/z value that is lost from an ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001526 ; owl:annotatedTarget "Native format defined by databasekey=xsd:long."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001527 ; owl:annotatedTarget "Spectra from Bruker/Protagen Proteinscape database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001528 ; owl:annotatedTarget "Native format defined by query=xsd:nonNegativeInteger."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001529 ; owl:annotatedTarget "Child-terms contain information to map the results back to spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001530 ; owl:annotatedTarget "Native format defined by mzMLid=xsd:IDREF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001531 ; owl:annotatedTarget "Native format defined by databasekey=xsd:long."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001532 ; owl:annotatedTarget "Native format defined by databasekey=xsd:string."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001533 ; owl:annotatedTarget "Bruker Daltonics' esquire series."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000151 ; owl:annotatedTarget "Bruker Daltonics' BioTOF II: ESI TOF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001534 ; owl:annotatedTarget "Bruker Daltonics' flex series."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001535 ; owl:annotatedTarget "Bruker Daltonics' BioTOF series."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001536 ; owl:annotatedTarget "Bruker Daltonics' micrOTOF series."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001537 ; owl:annotatedTarget "Bruker Daltonics' BioTOF: ESI TOF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001538 ; owl:annotatedTarget "Bruker Daltonics' BioTOF III: ESI TOF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001539 ; owl:annotatedTarget "Bruker Daltonics' UltroTOF-Q: ESI Q-TOF (MALDI optional)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001540 ; owl:annotatedTarget "Bruker Daltonics' micrOTOF II: ESI TOF, Nanospray, APCI, APPI."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001541 ; owl:annotatedTarget "Bruker Daltonics' maXis: ESI Q-TOF, Nanospray, APCI, APPI."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001542 ; owl:annotatedTarget "Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001543 ; owl:annotatedTarget "Bruker Daltonics' microflex LRF: MALDI TOF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000152 ; owl:annotatedTarget "Bruker Daltonics' BioTOF-Q: ESI Q-TOF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001544 ; owl:annotatedTarget "Bruker Daltonics' ultrafleXtreme: MALDI TOF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001545 ; owl:annotatedTarget "Bruker Daltonics' amaZon series."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001546 ; owl:annotatedTarget "Bruker Daltonics' amaZon X: ESI quadrupole ion trap, APCI, APPI, ETD, PTR."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001547 ; owl:annotatedTarget "Bruker Daltonics' maXis series."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001548 ; owl:annotatedTarget "Bruker Daltonics' solarix: ESI quadrupole ion trap, APCI, APPI, ETD, PTR."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001549 ; owl:annotatedTarget "Bruker Daltonics' solariX: ESI, MALDI, Qh-FT_ICR."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001550 ; owl:annotatedTarget "Bruker Daltonics' microflex II: MALDI TOF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001553 ; owl:annotatedTarget "Bruker Daltonics' autoflex II TOF/TOF: MALDI TOF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001554 ; owl:annotatedTarget "Bruker Daltonics' autoflex III TOF/TOF smartbeam: MALDI TOF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001555 ; owl:annotatedTarget "Bruker Daltonics' autoflex: MALDI TOF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000153 ; owl:annotatedTarget "ThermoFinnigan DELTA plusAdvantage MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001556 ; owl:annotatedTarget "Bruker Daltonics' apex series."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001557 ; owl:annotatedTarget "Shimadzu Corporation software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001558 ; owl:annotatedTarget "Shimadzu Biotech software for data acquisition, processing, and analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001559 ; owl:annotatedTarget "Native format defined by file=xsd:IDREF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001560 ; owl:annotatedTarget "Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument export format."^^xsd:string . [] oboInOwl:hasDbXref "http://www.proteomesoftware.com"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001561 ; owl:annotatedTarget "Scaffold analysis software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001562 ; owl:annotatedTarget "Scaffold native ID format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001563 ; owl:annotatedTarget "Source file for this mzIdentML was in SEQUEST SQT format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001564 ; owl:annotatedTarget "Source file for this mzIdentML was in Thermo Scientific Discoverer MSF format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001565 ; owl:annotatedTarget "Source file for this mzIdentML was in Waters IdentityE XML format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000154 ; owl:annotatedTarget "ThermoFinnigan DELTAplusXP MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001566 ; owl:annotatedTarget "Source file for this mzIdentML was in Waters ProteinLynx XML format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001567 ; owl:annotatedTarget "Source file for this mzIdentML was in Agilent SpectrumMill directory format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001568 ; owl:annotatedTarget "Scaffold peptide probability score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001569 ; owl:annotatedTarget "Waters IdentityE peptide score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001570 ; owl:annotatedTarget "ProteinLynx log likelihood score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001571 ; owl:annotatedTarget "Waters ProteinLynx Ladder score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000155 ; owl:annotatedTarget "OBSOLETE ThermoFinnigan ELEMENT2 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001572 ; owl:annotatedTarget "Spectrum mill peptide score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001573 ; owl:annotatedTarget "SpectrumMill SPI score (%)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001574 ; owl:annotatedTarget "Flag indicating to report only the spectra assigned to identified proteins."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001575 ; owl:annotatedTarget "Minimum number of peptides a protein must have to be accepted."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001576 ; owl:annotatedTarget "Minimum protein probability a protein must have to be accepted."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000156 ; owl:annotatedTarget "Bruker Daltonics' esquire 4000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001577 ; owl:annotatedTarget "Minimum probability a peptide must have to be accepted for protein scoring."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001578 ; owl:annotatedTarget "Minimum number of enzymatic termini a peptide must have to be accepted."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001579 ; owl:annotatedTarget "Scaffold protein probability score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001580 ; owl:annotatedTarget "Discriminant score from Agilent SpectrumMill software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001581 ; owl:annotatedTarget "The DC potential applied to the asymmetric waveform in FAIMS that compensates for the difference between high and low field mobility of an ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000157 ; owl:annotatedTarget "Bruker Daltonics' esquire 6000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001582 ; owl:annotatedTarget "Bioconductor package XCMS for preprocessing high-throughput, untargeted analyte profiling data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001583 ; owl:annotatedTarget "MaxQuant is a quantitative proteomics software package designed for analyzing large mass spectrometric data sets. It is specifically aimed at high resolution MS data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001584 ; owl:annotatedTarget "Search that includes data from Peptide Mass Fingerprint (PMF) and MS2 (aka Peptide Fragment Fingerprint - PFF)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001585 ; owl:annotatedTarget "Tabb Lab software for directly comparing peptides in a database to tandem mass spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001586 ; owl:annotatedTarget "Tabb Lab software for generating sequence tags from tandem mass spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001587 ; owl:annotatedTarget "Tabb Lab software for reconciling sequence tags to a protein database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001588 ; owl:annotatedTarget "Tabb Lab software for spectral library searches on tandem mass spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001589 ; owl:annotatedTarget "Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001590 ; owl:annotatedTarget "The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000158 ; owl:annotatedTarget "IonSpec Explorer MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001591 ; owl:annotatedTarget "A representative protein selected from a set of sequence same-set or spectrum same-set proteins."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001592 ; owl:annotatedTarget "A protein with significant homology to another protein, but some distinguishing peptide matches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001593 ; owl:annotatedTarget "TO ENDETAIL: a really generic relationship OR ortholog protein."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001594 ; owl:annotatedTarget "A protein which is indistinguishable or equivalent to another protein, having matches to an identical set of peptide sequences."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001595 ; owl:annotatedTarget "A protein which is indistinguishable or equivalent to another protein, having matches to a set of peptide sequences that cannot be distinguished using the evidence in the mass spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001596 ; owl:annotatedTarget "A protein with a sub-set of the peptide sequence matches for another protein, and no distinguishing peptide matches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000010 ; owl:annotatedTarget "OBSOLETE The common name of the particular analyzer stage being described. Synonym of mass analyzer, should be obsoleted."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000159 ; owl:annotatedTarget "Waters oa-ToF based GCT."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001597 ; owl:annotatedTarget "A protein with a sub-set of the matched spectra for another protein, where the matches cannot be distinguished using the evidence in the mass spectra, and no distinguishing peptide matches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001598 ; owl:annotatedTarget "A sequence same-set or sequence sub-set protein where the matches are distributed across two or more proteins."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001599 ; owl:annotatedTarget "A spectrum same-set or spectrum sub-set protein where the matches are distributed across two or more proteins."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001600 ; owl:annotatedTarget "Confidence category of inferred protein (conclusive, non conclusive, ambiguous group or indistinguishable)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001601 ; owl:annotatedTarget "OBSOLETE Name and location of the .raw file or files."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000160 ; owl:annotatedTarget "Bruker Daltonics' HCT: ESI Q-TOF, Nanospray, APCI, APPI."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001602 ; owl:annotatedTarget "OBSOLETE Path and name of the .srf (SEQUEST Result Format) file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001603 ; owl:annotatedTarget "OBSOLETE Ionization source (electro-, nano-, thermospray, electron impact, APCI, MALDI, FAB etc)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001604 ; owl:annotatedTarget "OBSOLETE Fragmentation method used (CID, MPD, ECD, PQD, ETD, HCD, Any)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001605 ; owl:annotatedTarget "Lower retention-time limit."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001606 ; owl:annotatedTarget "OBSOLETE Type of mass spectrometer used (ITMS, FTMS, TOFMS, SQMS, TQMS, SectorMS)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000161 ; owl:annotatedTarget "Bruker Daltonics' HCTplus: ESI Q-TOF, Nanospray, APCI, APPI."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001607 ; owl:annotatedTarget "Maximum mass limit of a singly charged precursor ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001608 ; owl:annotatedTarget "Minimum mass limit of a singly charged precursor ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001609 ; owl:annotatedTarget "Minimum number of peaks in a tandem mass spectrum that is allowed to pass the filter and to be subjected to further processing in the workflow."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001610 ; owl:annotatedTarget "OBSOLETE Level of the mass spectrum (MS2 ... MS10)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001611 ; owl:annotatedTarget "OBSOLETE Polarity mode (positive or negative)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000162 ; owl:annotatedTarget "IonSpec HiResESI MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001612 ; owl:annotatedTarget "Determines which precursor mass to use for a given MSn scan. This option applies only to higher-order MSn scans (n >= 3)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001613 ; owl:annotatedTarget "Signal-to-Noise ratio below which peaks are removed."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001614 ; owl:annotatedTarget "OBSOLETE Scan type for the precursor ion (full, Single Ion Monitoring (SIM), Single Reaction Monitoring (SRM))."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001615 ; owl:annotatedTarget "Used to filter out tandem mass spectra that have a total intensity current(sum of the intensities of all peaks in a spectrum) below the specified value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001616 ; owl:annotatedTarget "Specifies the fragmentation method to use in the search algorithm if it is not included in the scan header."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000163 ; owl:annotatedTarget "IonSpec HiResMALDI MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001617 ; owl:annotatedTarget "Specifies the charge state of the precursor ions, if it is not defined in the scan header."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001618 ; owl:annotatedTarget "Specifies the mass spectrometer to use to produce the spectra, if it is not included in the scan header."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001619 ; owl:annotatedTarget "Specifies the MS scan order used to produce the product spectra, if it is not included in the scan header."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001620 ; owl:annotatedTarget "Specifies the polarity of the ions monitored if it is not included in the scan header."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001621 ; owl:annotatedTarget "Upper retention-time limit."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000164 ; owl:annotatedTarget "Waters IsoPrime MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001622 ; owl:annotatedTarget "Specifies the size of the mass-to-charge ratio (m/z) window in daltons used to remove precursors."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001623 ; owl:annotatedTarget "Maximum allowed mass of a neutral loss."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001624 ; owl:annotatedTarget "Determines whether the charge-reduced precursor peaks found in an ETD or ECD spectrum are removed."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001625 ; owl:annotatedTarget "Determines whether neutral loss peaks are removed from ETD and ECD spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001626 ; owl:annotatedTarget "Determines whether overtone peaks are removed from LTQ FT or LTQ FT Ultra ECD spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000165 ; owl:annotatedTarget "Waters IsoProbe MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001627 ; owl:annotatedTarget "Determines whether precursor overtone peaks in the spectrum are removed from the input spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001628 ; owl:annotatedTarget "Determines whether precursor artifact peaks from the MS2 input spectra are removed."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001629 ; owl:annotatedTarget "Determines whether the fragment spectrum for scans with the same precursor mass is grouped, regardless of mass analyzer and activation type."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001630 ; owl:annotatedTarget "Determines whether spectra from different MS order scans can be grouped together."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001631 ; owl:annotatedTarget "OBSOLETE Chromatographic window where precursors to be grouped must reside to be considered the same species."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000166 ; owl:annotatedTarget "Waters IsoProbe T MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001632 ; owl:annotatedTarget "Groups spectra measured within the given mass and retention-time tolerances into a single spectrum for analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001633 ; owl:annotatedTarget "Highest charge state that is allowed for the deconvolution of multiply charged data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001634 ; owl:annotatedTarget "OBSOLETE Highest mass-to-charge (mz) value for spectral peaks in the measured spectrum that are considered for Xtract."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001635 ; owl:annotatedTarget "Lowest charge state that is allowed for the deconvolution of multiply charged data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001636 ; owl:annotatedTarget "OBSOLETE Lowest mass-to-charge (mz) value for spectral peaks in the measured spectrum that are considered for Xtract."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000167 ; owl:annotatedTarget "ThermoFinnigan LCQ Advantage MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001637 ; owl:annotatedTarget "Determines whether the isotopic pattern, i.e. all isotopes of a mass are removed from the spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001638 ; owl:annotatedTarget "Fraction of the more abundant peak that an overlapping multiplet must exceed in order to be processed (deconvoluted)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001639 ; owl:annotatedTarget "Accuracy required for a pattern fit to be considered valid."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001640 ; owl:annotatedTarget "Resolution at mass 400."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001641 ; owl:annotatedTarget "Minimum charge state below which peptides are filtered out."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000168 ; owl:annotatedTarget "ThermoFinnigan LCQ Classic MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001642 ; owl:annotatedTarget "Maximum charge above which peptides are filtered out."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001643 ; owl:annotatedTarget "Determines whether spectra with scores above the threshold score are retained rather than filtered out."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001644 ; owl:annotatedTarget "Determine dynamic post-translational modifications (PTMs)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001645 ; owl:annotatedTarget "Static Modification to all occurrences of a named amino acid."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001646 ; owl:annotatedTarget "OBSOLETE Determines whether the Proteome Discoverer application searches an additional decoy database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000169 ; owl:annotatedTarget "ThermoFinnigan LCQ Deca XP Plus MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001647 ; owl:annotatedTarget "Determines whether to search error-tolerant."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001648 ; owl:annotatedTarget "Maximum size of the .mgf (Mascot Generic Format) file in MByte."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001649 ; owl:annotatedTarget "URL (Uniform resource Locator) of the Mascot server."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001650 ; owl:annotatedTarget "Number of attempts to submit the Mascot search."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001651 ; owl:annotatedTarget "Number of attempts to submit the Mascot search."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000170 ; owl:annotatedTarget "Waters oa-ToF based MALDI L."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001652 ; owl:annotatedTarget "OBSOLETE Name of the user submitting the Mascot search."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001653 ; owl:annotatedTarget "Time interval between attempts to submit a search in seconds."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001654 ; owl:annotatedTarget "OBSOLETE Specifies the enzyme reagent used for protein digestion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001655 ; owl:annotatedTarget "OBSOLETE Mass tolerance used for matching fragment peaks in Da or mmu."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001656 ; owl:annotatedTarget "Type of instrument used to acquire the data in the raw file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000171 ; owl:annotatedTarget "Waters oa-ToF based MALDI LR."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001657 ; owl:annotatedTarget "Maximum number of missed cleavage sites to consider during the digest."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001658 ; owl:annotatedTarget "Minimum score in the IonScore column that each peptide must exceed in order to be reported."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001659 ; owl:annotatedTarget "OBSOLETE Mass window for which precursor ions are considered to be the same species."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001660 ; owl:annotatedTarget "Minimum protein score in the IonScore column that each protein must exceed in order to be reported."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001661 ; owl:annotatedTarget "OBSOLETE Database to use in the search (configured on the Mascot server)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000172 ; owl:annotatedTarget "ThermoFinnigan MAT253 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001662 ; owl:annotatedTarget "Specifies a factor that is used in calculating a threshold that determines whether a protein appears in the results report."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001663 ; owl:annotatedTarget "Specifies the relaxed target false discovery rate (FDR, 0.0 - 1.0) for peptide hits with moderate confidence."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001664 ; owl:annotatedTarget "Specifies the strict target false discovery rate (FDR, 0.0 - 1.0) for peptide hits with high confidence."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001665 ; owl:annotatedTarget "OBSOLETE Limits searches to entries from a particular species or group of species."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001666 ; owl:annotatedTarget "OBSOLETE Use average mass for the precursor."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000173 ; owl:annotatedTarget "ThermoFinnigan MAT900XP MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001667 ; owl:annotatedTarget "OBSOLETE Determines whether to use MudPIT or normal scoring."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001668 ; owl:annotatedTarget "Minimum cross-correlation threshold that determines whether peptides in an .srf file are imported."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001669 ; owl:annotatedTarget "Determines whether to calculate a probability score for every peptide match."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001670 ; owl:annotatedTarget "Dynamic C-terminal modification that is used during the search."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001671 ; owl:annotatedTarget "Percentage of the theoretical ions that must be found in order for a peptide to be scored and retained."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000174 ; owl:annotatedTarget "ThermoFinnigan MAT900XP Trap MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001672 ; owl:annotatedTarget "Maximum number of identical modifications that a single peptide can have."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001673 ; owl:annotatedTarget "Maximum number of different modifications that a peptide can have, e.g. because of steric hindrance."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001674 ; owl:annotatedTarget "Maximum number of peptides that are searched and scored per spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001675 ; owl:annotatedTarget "Maximum number of peptide matches reported per spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001676 ; owl:annotatedTarget "Maximum number of proteins that a single identified peptide can be associated with during protein assembly."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000175 ; owl:annotatedTarget "ThermoFinnigan MAT95XP MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001677 ; owl:annotatedTarget "Dynamic N-terminal modification that is used during the search."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001678 ; owl:annotatedTarget "Static modification for the C terminal of the peptide used during the search."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001679 ; owl:annotatedTarget "Static modification for the N terminal of the peptide used during the search."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001680 ; owl:annotatedTarget "Specifies a factor to apply to the protein score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001681 ; owl:annotatedTarget "Specifies a peptide threshold that determines whether the protein that it is a part of is scored and retained in the report."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000176 ; owl:annotatedTarget "ThermoFinnigan MAT95XP Trap MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001682 ; owl:annotatedTarget "OBSOLETE Determines whether the Proteome Discoverer application searches against a decoy database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001683 ; owl:annotatedTarget "Use average masses for the fragments."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001684 ; owl:annotatedTarget "Determines whether a ions with neutral loss are used for spectrum matching."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001685 ; owl:annotatedTarget "Determines whether b ions with neutral loss are used for spectrum matching."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001686 ; owl:annotatedTarget "Determines whether y ions with neutral loss are used for spectrum matching."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000177 ; owl:annotatedTarget "Bruker Daltonics' microflex: MALDI TOF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001687 ; owl:annotatedTarget "Determines whether z ions with neutral loss are used for spectrum matching."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001688 ; owl:annotatedTarget "Uses a ions for spectrum matching with this relative factor."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001689 ; owl:annotatedTarget "Uses b ions for spectrum matching with this relative factor."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001690 ; owl:annotatedTarget "Uses c ions for spectrum matching with this relative factor."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001691 ; owl:annotatedTarget "Uses c ions for spectrum matching with this relative factor."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000178 ; owl:annotatedTarget "Bruker Daltonics' microTOF LC: ESI TOF, Nanospray, APCI, APPI."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001692 ; owl:annotatedTarget "Uses c ions for spectrum matching with this relative factor."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001693 ; owl:annotatedTarget "Uses c ions for spectrum matching with this relative factor."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001694 ; owl:annotatedTarget "Uses x ions for spectrum matching with this relative factor."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001695 ; owl:annotatedTarget "Uses y ions for spectrum matching with this relative factor."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001696 ; owl:annotatedTarget "Uses z ions for spectrum matching with this relative factor."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000011 ; owl:annotatedTarget "Smallest mass difference between two equal magnitude peaks so that the valley between them is a specified fraction of the peak height."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000179 ; owl:annotatedTarget "ThermoFinnigan NEPTUNE MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001697 ; owl:annotatedTarget "Sets a minimum protein score that each protein must exceed in order to be reported."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001698 ; owl:annotatedTarget "Specifies which peak to select if more than one peak is found inside the integration window."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001699 ; owl:annotatedTarget "Specifies the mass-to-charge window that enables one to look for the reporter peaks."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001700 ; owl:annotatedTarget "Quantitation method for isobarically labeled quantitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001701 ; owl:annotatedTarget "OBSOLETE Format of the exported spectra (dta, mgf or mzData)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000180 ; owl:annotatedTarget "Waters NG-5400 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001702 ; owl:annotatedTarget "Name of the output file that contains the exported data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001703 ; owl:annotatedTarget "Influences the modifications search."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001704 ; owl:annotatedTarget "Standard high confidence XCorr parameter for charge = 1."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001705 ; owl:annotatedTarget "Standard high confidence XCorr parameter for charge = 2."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001706 ; owl:annotatedTarget "Standard high confidence XCorr parameter for charge = 3."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000181 ; owl:annotatedTarget "IonSpec OMEGA MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001707 ; owl:annotatedTarget "Standard high confidence XCorr parameter for charge >= 4."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001708 ; owl:annotatedTarget "Standard medium confidence XCorr parameter for charge = 1."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001709 ; owl:annotatedTarget "Standard medium confidence XCorr parameter for charge = 2."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001710 ; owl:annotatedTarget "Standard medium confidence XCorr parameter for charge = 3."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001711 ; owl:annotatedTarget "Standard medium confidence XCorr parameter for charge >= 4."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000182 ; owl:annotatedTarget "IonSpec OMEGA-2001 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001712 ; owl:annotatedTarget "FT high confidence XCorr parameter for charge = 1."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001713 ; owl:annotatedTarget "FT high confidence XCorr parameter for charge = 2."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001714 ; owl:annotatedTarget "FT high confidence XCorr parameter for charge = 3."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001715 ; owl:annotatedTarget "FT high confidence XCorr parameter for charge >= 4."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001716 ; owl:annotatedTarget "FT medium confidence XCorr parameter for charge = 1."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000183 ; owl:annotatedTarget "Bruker Daltonics' OmniFlex: MALDI TOF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001717 ; owl:annotatedTarget "FT medium confidence XCorr parameter for charge = 2."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001718 ; owl:annotatedTarget "FT medium confidence XCorr parameter for charge = 3."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001719 ; owl:annotatedTarget "FT medium confidence XCorr parameter for charge >= 4."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001720 ; owl:annotatedTarget "OBSOLETE ProteomeDiscoverer's 1st dynamic post-translational modification (PTM) input parameter."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001721 ; owl:annotatedTarget "OBSOLETE ProteomeDiscoverer's 2nd dynamic post-translational modification (PTM) input parameter."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000184 ; owl:annotatedTarget "Waters Platform ICP MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001722 ; owl:annotatedTarget "OBSOLETE ProteomeDiscoverer's 3rd dynamic post-translational modification (PTM) input parameter."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001723 ; owl:annotatedTarget "OBSOLETE ProteomeDiscoverer's 4th dynamic post-translational modification (PTM) input parameter."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001724 ; owl:annotatedTarget "Static Modification for X."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001725 ; owl:annotatedTarget "Minimal initial peptide probability to contribute to analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001726 ; owl:annotatedTarget "Minimum adjusted peptide probability contributing to protein probability."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000185 ; owl:annotatedTarget "ThermoFinnigan PolarisQ MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001727 ; owl:annotatedTarget "Minimum peptide weight contributing to protein probability."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001728 ; owl:annotatedTarget "Number of spectra from 1+ precursor ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001729 ; owl:annotatedTarget "Number of spectra from 2+ precursor ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001730 ; owl:annotatedTarget "Number of spectra from 3+ precursor ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001731 ; owl:annotatedTarget "Number of spectra from 4+ precursor ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000186 ; owl:annotatedTarget "Applied Biosystems/MDS SCIEX Proteomics Solution 1 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001732 ; owl:annotatedTarget "Number of spectra from 5+ precursor ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001733 ; owl:annotatedTarget "Total number of predicted correct protein ids (sum of probabilities)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001734 ; owl:annotatedTarget "OBSOLETE Sample organism (used for annotation purposes)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001735 ; owl:annotatedTarget "OBSOLETE Full path database name."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001736 ; owl:annotatedTarget "Residues considered equivalent when comparing peptides."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000187 ; owl:annotatedTarget "Applied Biosystems/MDS SCIEX Q TRAP MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001737 ; owl:annotatedTarget "OBSOLETE File type (if not pepXML)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001738 ; owl:annotatedTarget "OBSOLETE Input pepXML files."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001739 ; owl:annotatedTarget "OBSOLETE Input pepXML files (old)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001740 ; owl:annotatedTarget "Windows full path for database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001741 ; owl:annotatedTarget "Windows pepXML file names."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000188 ; owl:annotatedTarget "Waters oa-ToF based Q-Tof micro."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001742 ; owl:annotatedTarget "Finnigan LTQ Orbitrap Velos MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001743 ; owl:annotatedTarget "Determines if to use A ions for spectrum matching."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001744 ; owl:annotatedTarget "Determines if to use B ions for spectrum matching."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001745 ; owl:annotatedTarget "Determines if to use C ions for spectrum matching."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001746 ; owl:annotatedTarget "Determines if to use D ions for spectrum matching."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000012 ; owl:annotatedTarget "Which of the available standard measures is used to define whether two peaks are separate."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000189 ; owl:annotatedTarget "Waters oa-ToF based Q-Tof Ultima."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001747 ; owl:annotatedTarget "Determines if to use V ions for spectrum matching."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001748 ; owl:annotatedTarget "Determines if to use W ions for spectrum matching."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001749 ; owl:annotatedTarget "Determines if to use X ions for spectrum matching."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001750 ; owl:annotatedTarget "Determines if to use Y ions for spectrum matching."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001751 ; owl:annotatedTarget "Determines if to use z ions for spectrum matching."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000190 ; owl:annotatedTarget "Applied Biosystems/MDS SCIEX QSTAR MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001752 ; owl:annotatedTarget "Determines if to use precursor reevaluation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001753 ; owl:annotatedTarget "Signal-to-Noise ratio below which peaks are removed (in FT mode only)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001754 ; owl:annotatedTarget "Unknown Mascot parameter which ProteomeDiscoverer uses for mascot searches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001755 ; owl:annotatedTarget "Phone number of the contact person or organization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001756 ; owl:annotatedTarget "Fax number for the contact person or organization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000191 ; owl:annotatedTarget "Waters (triple) quadrupole based micro."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001757 ; owl:annotatedTarget "Toll-free phone number of the contact person or organization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001758 ; owl:annotatedTarget "Significance threshold type used in Mascot reporting (either 'identity' or 'homology')."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001759 ; owl:annotatedTarget "Strategy used by Mascot to group proteins with same peptide matches (one of 'none', 'Occam's razor' or 'family clustering')."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001760 ; owl:annotatedTarget "List of Percolator features that were used in processing the peptide matches. Typical Percolator features are 'retentionTime', 'dM', 'mScore', 'lgDScore', 'mrCalc', 'charge' and 'dMppm'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001761 ; owl:annotatedTarget "Waters LC-system ACQUITY UPLC."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001762 ; owl:annotatedTarget "Waters LC-system ACQUITY UPLC H-Class."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001763 ; owl:annotatedTarget "Waters LC-system ACQUITY UPLC H-Class Bio."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000192 ; owl:annotatedTarget "Waters (triple) quadrupole based Ultima."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001764 ; owl:annotatedTarget "Waters LC-system ACQUITY UPLC I-Class."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001765 ; owl:annotatedTarget "Waters LC-system ACQUITY UPLC Systems with 2D Technology."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001766 ; owl:annotatedTarget "Waters LC-system nanoACQUITY UPLC."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001767 ; owl:annotatedTarget "Waters LC-system nanoACQUITY UPLC System with 1D Technology."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001768 ; owl:annotatedTarget "Waters LC-system nanoACQUITY UPLC with HDX Technology."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001769 ; owl:annotatedTarget "Waters LC-system TRIZAIC UPLC nanoTile."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001770 ; owl:annotatedTarget "Waters oa-ToF based GCT Premier."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001771 ; owl:annotatedTarget "Waters oa-ToF based MALDI Synapt G2 HDMS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001772 ; owl:annotatedTarget "Waters oa-ToF based MALDI Synapt G2 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001773 ; owl:annotatedTarget "Waters oa-ToF based MALDI Synapt G2 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000193 ; owl:annotatedTarget "ThermoFinnigan Surveyor MSQ MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001774 ; owl:annotatedTarget "Waters oa-ToF based MALDI Synapt G2-S MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001775 ; owl:annotatedTarget "Waters oa-ToF based MALDI Synapt HDMS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001776 ; owl:annotatedTarget "Waters oa-ToF based MALDI Synapt MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001777 ; owl:annotatedTarget "Waters oa-ToF based Synapt G2 HDMS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001778 ; owl:annotatedTarget "Waters oa-ToF based Synapt G2 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001779 ; owl:annotatedTarget "Waters oa-ToF based Synapt G2-S HDMS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001780 ; owl:annotatedTarget "Waters oa-ToF based Synapt G2-S MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001781 ; owl:annotatedTarget "Waters oa-ToF based Synapt HDMS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001782 ; owl:annotatedTarget "Waters oa-ToF based Synapt MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001783 ; owl:annotatedTarget "Waters oa-ToF based Xevo G2 Q-Tof."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000194 ; owl:annotatedTarget "Applied Biosystems/MDS SCIEX SymBiot I MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001784 ; owl:annotatedTarget "Waters oa-ToF based Xevo G2 Tof."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001785 ; owl:annotatedTarget "Waters oa-ToF based Xevo Q-Tof."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001786 ; owl:annotatedTarget "Waters quadrupole based 3100."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001787 ; owl:annotatedTarget "Waters quadrupole based Acquity SQD."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001788 ; owl:annotatedTarget "Waters quadrupole based Acquity TQD."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001789 ; owl:annotatedTarget "Waters (triple) quadrupole based Quattro micro GC."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001790 ; owl:annotatedTarget "Waters quadrupole based Xevo TQ MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001791 ; owl:annotatedTarget "Waters quadrupole based Xevo TQD."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001792 ; owl:annotatedTarget "Waters quadrupole based Xevo TQ-S."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000195 ; owl:annotatedTarget "Applied Biosystems/MDS SCIEX SymBiot XVI MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001793 ; owl:annotatedTarget "NCBI TaxID taxonomy ID to prefer when two or more proteins match the same set of peptides or when protein entry in database represents multiple sequences."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001795 ; owl:annotatedTarget "Waters Empower software for liquid chromatography and mass spectrometry acquisition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001796 ; owl:annotatedTarget "Waters UNIFY software for liquid chromatography and mass spectrometry acquisition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001797 ; owl:annotatedTarget "OBSOLETE An ion mobility mass spectrometry technique based on the superimposition of travelling voltage waves on a radially-confining RF voltage in a gas-filled, stacked-ring ion guide."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001798 ; owl:annotatedTarget "LECO software for data acquisition and analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001799 ; owl:annotatedTarget "Software for acquisition, processing and analysis of data for LECO instruments."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001800 ; owl:annotatedTarget "LECO instrument model."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001801 ; owl:annotatedTarget "LECO high resolution time-of-flight GC mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001802 ; owl:annotatedTarget "LECO high resolution time-of-flight LC mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001803 ; owl:annotatedTarget "LECO GC time-of-flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000196 ; owl:annotatedTarget "ThermoFinnigan TEMPUS TOF MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001804 ; owl:annotatedTarget "LECO bench-top GC time-of-flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001805 ; owl:annotatedTarget "The data type of the value reported in a QuantLayer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001806 ; owl:annotatedTarget "Attributes describing the details of an object relevant for reporting quantification workflows or values."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001807 ; owl:annotatedTarget "Attribute describing a study variable."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001808 ; owl:annotatedTarget "The study variable is 'technical replicate'. The string value denotes the category of technical replicate, e.g. 'run generated from same sample'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001809 ; owl:annotatedTarget "The study variable is 'biological replicate'. This means, the run was generated from another individual or sample."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001810 ; owl:annotatedTarget "The experimental condition is 'case' in contrast to 'control'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001811 ; owl:annotatedTarget "The experimental condition is 'control' in contrast to 'case'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001812 ; owl:annotatedTarget "The experimental condition is 'disease' in contrast to 'healthy'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000197 ; owl:annotatedTarget "ThermoFinnigan TRACE DSQ MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001813 ; owl:annotatedTarget "The experimental condition is 'healthy' in contrast to 'disease'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001814 ; owl:annotatedTarget "The experimental condition is given in the value of this term."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001815 ; owl:annotatedTarget "The experimental design followed a time series design. The time point of this run is given in the value of this term."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001816 ; owl:annotatedTarget "The experimental design followed a dilution series design. The concentration of this run is given in the value of this term."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001817 ; owl:annotatedTarget "Attribute describing a raw file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001818 ; owl:annotatedTarget "The raw file contains the run of one sample (e.g. spectral counting, LC-MS label-free)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001819 ; owl:annotatedTarget "The raw file contains the run of two samples (e.g. SILAC, metabolic labelling)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000198 ; owl:annotatedTarget "ThermoFinnigan TRITON MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001820 ; owl:annotatedTarget "The raw file contains the run of three samples (e.g. 3-plex SILAC)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001821 ; owl:annotatedTarget "The raw file contains the run of four samples (e.g. 4-plex iTraq)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001822 ; owl:annotatedTarget "The raw file contains the run of eight samples (e.g. 8-plex iTraq)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001823 ; owl:annotatedTarget "Attribute describing, how raw files build a raw file group."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001824 ; owl:annotatedTarget "Attribute describing, how raw files build a raw file group."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001825 ; owl:annotatedTarget "Attribute describing a feature list."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001826 ; owl:annotatedTarget "The mass trace of the features of this feature list specifies rectangles. Each mass trace has the syntax (RT_start,MZ_start,RT_end,MZ_end), i.e. opposite corners are given."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001827 ; owl:annotatedTarget "The mass trace of the features of this feature list specifies polygons. Each mass trace has the syntax (RT_1, MZ_1, RT_2, MZ_2, ... , RT_i, MZ_i, ... , RT_n, MZ_n), where the line (RT_n, MZ_n)->(RT_1, MZ_1) is implicit."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001828 ; owl:annotatedTarget "Attribute describing a feature."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000013 ; owl:annotatedTarget "OBSOLETE Specify the nature of resolution for the mass analyzer. Resolution is usually either constant with respect to m/z or proportional to m/z."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000199 ; owl:annotatedTarget "ThermoFinnigan TSQ Quantum MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001829 ; owl:annotatedTarget "Identifier for an SRM transition in an external document describing additional information about the transition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001830 ; owl:annotatedTarget "Software from Nonlinear Dynamics for LC-MS label-free workflow."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001831 ; owl:annotatedTarget "Software for SILAC workflow."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001832 ; owl:annotatedTarget "Quantitation software comment or any customizations to the default setup of the software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001833 ; owl:annotatedTarget "The overall workflow of this quantitation report."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001834 ; owl:annotatedTarget "LC-MS label-free workflow (RT m/z map)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001835 ; owl:annotatedTarget "SILAC workflow (heavy, light, and sometimes medium peak)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001836 ; owl:annotatedTarget "Spectral counting workflow (number of identified MS2 spectra as approximation of peptide / protein quant)."^^xsd:string . [] oboInOwl:hasDbXref "PMID:15385600"^^xsd:string, "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001837 ; owl:annotatedTarget "Quantification analysis using the SCIEX amine-reactive isobaric tags for relative and absolute quantification (iTRAQ) labelling workflow, wherein 2-8 reporter ions are measured in MS2 spectra near in the 114-121 m/z range."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000200 ; owl:annotatedTarget "IonSpec Ultima MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001838 ; owl:annotatedTarget "Selected Reaction Monitoring workflow (XIC quantitation of precursor / fragment mass pair)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001839 ; owl:annotatedTarget "Metabolic labeling workflow (heavy and light versions of peptides, depending on number of nitrogens)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001840 ; owl:annotatedTarget "Maximum peak intensity of the LC-MS feature."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001841 ; owl:annotatedTarget "Real (intensity times area) volume of the LC-MS feature."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001842 ; owl:annotatedTarget "The number of MS2 spectra identified for a raw peptide sequence without PTMs and charge state in spectral counting."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001843 ; owl:annotatedTarget "Maximum intensity of MS1 feature."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000201 ; owl:annotatedTarget "Bruker Daltonics' ultraflex: MALDI TOF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001844 ; owl:annotatedTarget "Area of MS1 feature."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001845 ; owl:annotatedTarget "OBSOLETE Area of MS1 peak (e.g. SILAC, 15N)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001846 ; owl:annotatedTarget "Area of all peaks belonging to the isotopic pattern of light or heavy peak (e.g. 15N)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001847 ; owl:annotatedTarget "Intensity of MS2 reporter ion (e.g. iTraq)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001848 ; owl:annotatedTarget "Simple ratio of two values (enumerator and denominator)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000202 ; owl:annotatedTarget "Bruker Daltonics' ultraflex TOF/TOF: MALDI TOF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001849 ; owl:annotatedTarget "OBSOLETE Peptide quantification value calculated as sum of MatchedFeature quantification values."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001850 ; owl:annotatedTarget "Normalized peptide value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001851 ; owl:annotatedTarget "Protein quantification value calculated as sum of peptide values."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001852 ; owl:annotatedTarget "Normalized protein value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001853 ; owl:annotatedTarget "Global datatype: Maximum of all pair-wise fold changes of group means (e.g. Progenesis)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000203 ; owl:annotatedTarget "Applied Biosystems/MDS SCIEX Voyager-DE PRO MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001854 ; owl:annotatedTarget "Global datatype: p-value of ANOVA of group means (e.g. Progenesis)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001855 ; owl:annotatedTarget "P-value of t-Test of two groups."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001856 ; owl:annotatedTarget "Intensity (or area) of MS2 reporter ion (e.g. iTraq)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001857 ; owl:annotatedTarget "Normalized value of MS2 reporter ion (e.g. iTraq)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001858 ; owl:annotatedTarget "Area of the extracted ion chromatogram (e.g. of a transition in SRM)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000204 ; owl:annotatedTarget "Applied Biosystems/MDS SCIEX Voyager-DE STR MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001859 ; owl:annotatedTarget "Normalized area of the extracted ion chromatogram (e.g. of a transition in SRM)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001860 ; owl:annotatedTarget "Protein quantification value calculated as mean of peptide ratios."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001861 ; owl:annotatedTarget "Terms used to describe types of quantification data processing."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001862 ; owl:annotatedTarget "Normalization of protein values to the mean of the sum of all protein PSM counts (e.g. spectral counting)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001863 ; owl:annotatedTarget "Normalization of protein values to approach the same distribution."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001864 ; owl:annotatedTarget "Normalization of peptide values to approach the same distribution."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001865 ; owl:annotatedTarget "Automatic RT alignment of Progenesis software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001866 ; owl:annotatedTarget "RT alignment of Progenesis software using automatic and manual vectors."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000205 ; owl:annotatedTarget "The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001867 ; owl:annotatedTarget "Normalization as performed by Progenesis LC-MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001868 ; owl:annotatedTarget "Estimation of the q-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs, possibly with different mass modifications, mapping to the same sequence have been collapsed to one entry)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001869 ; owl:annotatedTarget "Estimation of the q-value for proteins."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001870 ; owl:annotatedTarget "Estimation of the p-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000206 ; owl:annotatedTarget "Data acquired from specific product ions corresponding to m/z selected precursor ions recorded via multiple stages of mass spectrometry. Selected reaction monitoring can be performed in time or in space."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001871 ; owl:annotatedTarget "Estimation of the p-value for proteins."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001872 ; owl:annotatedTarget "Estimation of the e-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001873 ; owl:annotatedTarget "Estimation of the e-value for proteins."^^xsd:string . [] oboInOwl:hasDbXref "PMID:19253293"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001874 ; owl:annotatedTarget "OBSOLETE A smoothing of the distribution of q-values calculated for PSMs from individual search engines, such that ordering of result quality is maintained and all FDRScore values are guaranteed to have a value > 0."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001875 ; owl:annotatedTarget "The regular expression describing the sequence motif for a modification."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001876 ; owl:annotatedTarget "The a priori probability of a modification."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001877 ; owl:annotatedTarget "Software for acquisition, processing and analysis of data for LECO instruments."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001878 ; owl:annotatedTarget "Shimadzu Biotech software for data acquisition, processing, and analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001879 ; owl:annotatedTarget "The potential difference between two adjacent interface voltages affecting in-source collision induced dissociation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001880 ; owl:annotatedTarget "The dissociation of an ion as a result of collisional excitation during ion transfer from an atmospheric pressure ion source and the mass spectrometer vacuum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001881 ; owl:annotatedTarget "mz5 file format, modelled after mzML."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001882 ; owl:annotatedTarget "Attributes of the quality of a transition that affect its selection as appropriate."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001883 ; owl:annotatedTarget "Variation of a set of signal measurements calculated as the standard deviation relative to the mean."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001884 ; owl:annotatedTarget "Unitless number providing the ratio of the total measured intensity of a signal relative to the estimated noise level for that signal."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001885 ; owl:annotatedTarget "Parameters string passed to a command-line interface software application, omitting the executable name."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001886 ; owl:annotatedTarget "Software for data analysis of peptides and proteins."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000207 ; owl:annotatedTarget "OBSOLETE An experimentally determined mass that is can be to determine a unique elemental formula. For ions less than 200 u, a measurement with 5 ppm accuracy is sufficient to determine the elemental composition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001887 ; owl:annotatedTarget "The SQID result 'Score'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001888 ; owl:annotatedTarget "The SQID result 'deltaScore'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001889 ; owl:annotatedTarget "The SQID result 'protein score'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001890 ; owl:annotatedTarget "The data type normalised abundance for proteins produced by Progenesis LC-MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001891 ; owl:annotatedTarget "The data type normalised abundance for peptides produced by Progenesis LC-MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001892 ; owl:annotatedTarget "The data type raw abundance for proteins produced by Progenesis LC-MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001893 ; owl:annotatedTarget "The data type raw abundance for peptide produced by Progenesis LC-MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001894 ; owl:annotatedTarget "The data type confidence score produced by Progenesis LC-MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001895 ; owl:annotatedTarget "The data type peptide count produced by Progenesis LC-MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001896 ; owl:annotatedTarget "The data type feature intensity produced by Progenesis LC-MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001897 ; owl:annotatedTarget "The data type peptide counts (unique) produced by MaxQuant."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001898 ; owl:annotatedTarget "The data type peptide counts (all) produced by MaxQuant."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001899 ; owl:annotatedTarget "The data type peptide counts (razor+unique) produced by MaxQuant."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001900 ; owl:annotatedTarget "The data type sequence length produced by MaxQuant."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001901 ; owl:annotatedTarget "The data type PEP (posterior error probability) produced by MaxQuant."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001902 ; owl:annotatedTarget "The data type LFQ intensity produced by MaxQuant."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000208 ; owl:annotatedTarget "OBSOLETE The mass of an ion or molecule calculated using the average mass of each element weighted for its natural isotopic abundance."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001903 ; owl:annotatedTarget "The data type feature intensity produced by MaxQuant."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001904 ; owl:annotatedTarget "The data type MS2 count produced by MaxQuant."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001905 ; owl:annotatedTarget "The emPAI value of protein abundance, produced from the emPAI algorithm."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001906 ; owl:annotatedTarget "The APEX value of protein abundance, produced from the APEX software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001907 ; owl:annotatedTarget "The full width of a retention time window for a chromatographic peak."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001908 ; owl:annotatedTarget "Thermo Scientific ISQ single quadrupole MS with the ExtractraBrite source."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001909 ; owl:annotatedTarget "Thermo Scientific second generation Velos."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001910 ; owl:annotatedTarget "Thermo Scientific LTQ Orbitrap Elite, often just referred to as the Orbitrap Elite."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001911 ; owl:annotatedTarget "Thermo Scientific Q Exactive."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001912 ; owl:annotatedTarget "Thermo Scientific PinPoint SRM analysis software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001913 ; owl:annotatedTarget "Potential difference setting of the Thermo Scientific S-lens stacked-ring ion guide in volts."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001914 ; owl:annotatedTarget "Python module to interface mzML Data."^^xsd:string . [] oboInOwl:hasDbXref "BRENDA:3.4.21.37"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001915 ; owl:annotatedTarget "Enzyme leukocyte elastase (EC 3.4.21.37)."^^xsd:string . [] oboInOwl:hasDbXref "BRENDA:3.4.21.26"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001916 ; owl:annotatedTarget "Enzyme proline endopeptidase (EC 3.4.21.26)."^^xsd:string . [] oboInOwl:hasDbXref "BRENDA:3.4.21.19"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001917 ; owl:annotatedTarget "Enzyme glutamyl endopeptidase (EC 3.4.21.19)."^^xsd:string . [] oboInOwl:hasDbXref "PubChem_Compound:4739928"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001918 ; owl:annotatedTarget "Chemical iodobenzoate. Cleaves after W."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001919 ; owl:annotatedTarget "Main identifier of a ProteomeXchange dataset."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000209 ; owl:annotatedTarget "OBSOLETE The minimum energy that must be imparted to an atom or molecule to produce a specified ion. The term appearance potential is not recommended."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001921 ; owl:annotatedTarget "Version number of a ProteomeXchange accession number."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string, "http://dx.doi.org"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001922 ; owl:annotatedTarget "DOI unique identifier of a publication."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001923 ; owl:annotatedTarget "Free text attribute that can enrich the information about an entity."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001924 ; owl:annotatedTarget "Keyword present in a scientific publication."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000210 ; owl:annotatedTarget "The peak in a mass spectrum that has the greatest intensity. This term may be applied to the spectra of pure substances or mixtures."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001925 ; owl:annotatedTarget "Keyword assigned by the data submitter."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001926 ; owl:annotatedTarget "Keyword assigned by a data curator."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001927 ; owl:annotatedTarget "Hash assigned by the Tranche resource to an individual file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001928 ; owl:annotatedTarget "Hash assigned by the Tranche resource to a whole project."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001929 ; owl:annotatedTarget "URI that allows the access to one experiment in the PRIDE database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001930 ; owl:annotatedTarget "URI that allows the access to one project in the PRIDE database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001931 ; owl:annotatedTarget "The source interface."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001932 ; owl:annotatedTarget "The source interface model."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001933 ; owl:annotatedTarget "The source sprayer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000211 ; owl:annotatedTarget "OBSOLETE The total charge on an ion divided by the electron charge e. OBSOLETED 2009-10-27 since this was viewed as a duplication of 00041 charge state."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001934 ; owl:annotatedTarget "The source sprayer type."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001935 ; owl:annotatedTarget "The source sprayer manufacturer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001936 ; owl:annotatedTarget "The source sprayer model."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001937 ; owl:annotatedTarget "Plate where the sample solution is spotted in a MALDI or similar instrument."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000212 ; owl:annotatedTarget "OBSOLETE A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1.660 538 86(28) x 10^-27 kg."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001938 ; owl:annotatedTarget "The sample plate type."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001939 ; owl:annotatedTarget "Stainless steel plate."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001940 ; owl:annotatedTarget "Coated glass plate."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001941 ; owl:annotatedTarget "Whether the sprayer is fed or is loaded with sample once."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001942 ; owl:annotatedTarget "The sprayer is loaded with sample once."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001943 ; owl:annotatedTarget "The sprayer is continuously fed with sample."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001944 ; owl:annotatedTarget "Potential difference between Q2 and Q3 in a triple quadrupole instrument in volts."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001945 ; owl:annotatedTarget "LECO nominal mass resolution time-of-flight GCxGC mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001946 ; owl:annotatedTarget "PEAKS Studio software for data analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001947 ; owl:annotatedTarget "PEAKS Online software for high throughput data analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001948 ; owl:annotatedTarget "PEAKS Node software for high throughput data analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001949 ; owl:annotatedTarget "Bioinformatics Solutions Inc. Software for data processing and analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001950 ; owl:annotatedTarget "The PEAKS peptide '-10lgP Score'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001951 ; owl:annotatedTarget "The PEAKS protein '-10lgP Score'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000213 ; owl:annotatedTarget "OBSOLETE The electron affinity of M is the minimum energy required for the process M- ? M + e where M- and M are in their ground rotational, vibrational and electronic states and the electron has zero kinetic energy."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001952 ; owl:annotatedTarget "The ZCore probability score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001953 ; owl:annotatedTarget "The source interface manufacturer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001954 ; owl:annotatedTarget "Parameters used in the mass spectrometry acquisition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001955 ; owl:annotatedTarget "No cleavage."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001956 ; owl:annotatedTarget "Unspecific cleavage."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001957 ; owl:annotatedTarget "Regular expression for leukocyte elastase."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000214 ; owl:annotatedTarget "OBSOLETE The potential difference through which electrons are accelerated before they are used to bring about electron ionization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001958 ; owl:annotatedTarget "Regular expression for proline endopeptidase."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001959 ; owl:annotatedTarget "Regular expression for glutamyl endopeptidase."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001960 ; owl:annotatedTarget "Regular expression for 2-iodobenzoate."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001961 ; owl:annotatedTarget "Algorithm used to score the match between a spectrum and a peptide ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001962 ; owl:annotatedTarget "C13 peaks to use in peak detection."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001963 ; owl:annotatedTarget "Weighting factor for protein list compilation by ProteinExtractor."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001964 ; owl:annotatedTarget "Flag indicating a second round search with Mascot."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001965 ; owl:annotatedTarget "Flag indicating a second round search with Phenyx."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001966 ; owl:annotatedTarget "The mobility of an MS2 product ion, as measured by ion mobility mass spectrometry."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001967 ; owl:annotatedTarget "OBSOLETE The ion drift time of an MS2 product ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001968 ; owl:annotatedTarget "Statistic to convey the confidence of the localization of an amino acid modification on a peptide sequence at the PSM-level."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1021/pr200611n"^^xsd:string, "PMID:22073976"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001969 ; owl:annotatedTarget "phosphoRS score for PTM site location at the PSM-level."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1021/pr200611n"^^xsd:string, "PMID:22073976"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001970 ; owl:annotatedTarget "Probability that the respective isoform is correct."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1021/pr200611n"^^xsd:string, "PMID:22073976"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001971 ; owl:annotatedTarget "Estimate of the probability that the respective site is truly phosphorylated."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001972 ; owl:annotatedTarget "Version of the post-translational modification scoring algorithm."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000215 ; owl:annotatedTarget "OBSOLETE The calculated mass of an ion or molecule containing a single isotope of each atom."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001973 ; owl:annotatedTarget "DeBunker software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001974 ; owl:annotatedTarget "Score specific to DeBunker."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001975 ; owl:annotatedTarget "The difference between a theoretically calculated m/z and the corresponding experimentally measured m/z. It can be expressed as absolute or relative value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000216 ; owl:annotatedTarget "A section of a mass spectrometer in which there are no electric or magnetic fields."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001976 ; owl:annotatedTarget "The difference between a theoretically calculated molecular mass M and the corresponding experimentally measured M. It can be expressed as absolute or relative value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001977 ; owl:annotatedTarget "MSQuant software."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1021/pr900721e"^^xsd:string, "PMID:19888749"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001978 ; owl:annotatedTarget "The PTM score from MSQuant software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000217 ; owl:annotatedTarget "OBSOLETE A measure of the probability that a given ionization process will occur when an atom or molecule interacts with a photon, electron, atom or molecule."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001979 ; owl:annotatedTarget "The PTM score from MaxQuant software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001980 ; owl:annotatedTarget "The Phospho (STY) Probabilities from MaxQuant software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001981 ; owl:annotatedTarget "The Phospho (STY) Score Diffs from MaxQuant software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001982 ; owl:annotatedTarget "The P-site localization probability value from MaxQuant software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001983 ; owl:annotatedTarget "The PTM Delta Score value from MaxQuant software (Difference between highest scoring site and second highest)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001984 ; owl:annotatedTarget "Ascore software."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1038/nbt1240"^^xsd:string, "PMID:16964243"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001985 ; owl:annotatedTarget "A-score for PTM site location at the PSM-level."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1021/pr1006813"^^xsd:string, "PMID:20836569"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001986 ; owl:annotatedTarget "H-Score for peptide phosphorylation site location."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001987 ; owl:annotatedTarget "Vacuum-drying MALDI sample preparation crystallization method."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000218 ; owl:annotatedTarget "OBSOLETE The ratio of the number of ions formed to the number of electrons, molecules or photons used."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001988 ; owl:annotatedTarget "Crushed-crystal MALDI sample preparation method."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1021/ac00091a044"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001989 ; owl:annotatedTarget "Fast-evaporation MALDI sample preparation method."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001990 ; owl:annotatedTarget "Overlayer method combining features of the crushed-crystal method and the fast-evaporation method."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1002/(SICI)1096-9888(199706)32:6<593::AID-JMS511>3.3.CO;2-4"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001991 ; owl:annotatedTarget "Sandwich MALDI sample preparation method."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1021/cc0500710"^^xsd:string, "PMID:16283807"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001992 ; owl:annotatedTarget "Spin coating MALDI sample preparation method."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001993 ; owl:annotatedTarget "Quick & dirty (Q&D) sample preparation separating matrix handling from sample handling."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001994 ; owl:annotatedTarget "Top-hat morphological filter based on the basic morphological operations 'erosion' and 'dilatation'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001995 ; owl:annotatedTarget "Constructs the baseline by fitting multiple parabolas to the spectrum starting with the large scale structures."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001996 ; owl:annotatedTarget "The spectrum that will be baseline subtracted is divided into a number of segments."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1093/bioinformatics/btl355"^^xsd:string, "PMID:16820428"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001997 ; owl:annotatedTarget "The random noise is removed by using the undecimated wavelet transform."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1021/ac951158i"^^xsd:string, "PMID:21619291"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001998 ; owl:annotatedTarget "It searches for known patterns in the measured spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1001999 ; owl:annotatedTarget "Normalization of areas below the curves."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1007/s00216-003-2057-0"^^xsd:string, "PMID:12830354"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002000 ; owl:annotatedTarget "A Bruker's proprietary technique where molecular ions are initially accelerated at lower energy, then collide with inert gas in a collision cell that is then 'lifted' to high potential. The use of inert gas is optional, as it could lift also fragments provided by LID."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002001 ; owl:annotatedTarget "MS1 label-based raw feature quantitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002002 ; owl:annotatedTarget "MS1 label-based peptide level quantitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002003 ; owl:annotatedTarget "MS1 label-based protein level quantitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002004 ; owl:annotatedTarget "MS1 label-based proteingroup level quantitation."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1002/pmic.201100463"^^xsd:string, "http://www.biognosys.ch/products/rt-kit.html"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002005 ; owl:annotatedTarget "A de facto standard providing the retention times at which a specific set of 10 reference peptides exit the reference chromatographic column. The kit may be obtain from Biognosys."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002006 ; owl:annotatedTarget "The type of the transitions, e.g. target or decoy."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002007 ; owl:annotatedTarget "A transition used to target a specific compound that may be in the sample."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002008 ; owl:annotatedTarget "A transition not expected to be present in the sample and used to calculate statistical confidence of target transition detections in some workflows."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002009 ; owl:annotatedTarget "Quantitation analysis using an isobaric labelling workflow."^^xsd:string . [] oboInOwl:hasDbXref "PMID:12713048"^^xsd:string, "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002010 ; owl:annotatedTarget "Quantitation analysis using the Thermo Fisher amine-reactive tandem mass tag (TMT) labelling workflow, wherein 2-10 reporter ions are measured in MS2 spectra in the 126-131 m/z."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1126/science.1104404"^^xsd:string, "PMID:15486296"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002011 ; owl:annotatedTarget "Combination of electrospray and desorption ionization method that ionizes gases, liquids and solids in open air under atmospheric pressure."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000219 ; owl:annotatedTarget "OBSOLETE The minimum energy required to remove an electron from an atom or molecule to produce a positive ion."^^xsd:string . [] oboInOwl:hasDbXref "http://www.matrixscience.com/help/pt_mods_help.html#SITE"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002012 ; owl:annotatedTarget "Relative probability that PTM site assignment is correct, derived from the Mascot score difference between matches to the same spectrum (Mascot Delta Score)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002013 ; owl:annotatedTarget "Collision energy at the start of the collision energy ramp."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002014 ; owl:annotatedTarget "Collision energy at the end of the collision energy ramp."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002015 ; owl:annotatedTarget "Spectral count peptide level quantitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000220 ; owl:annotatedTarget "OBSOLETE A quantitative mass spectrometry technique in which an isotopically enriched compound is used as an internal standard."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002016 ; owl:annotatedTarget "Spectral count protein level quantitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002017 ; owl:annotatedTarget "Spectral count proteingroup level quantitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002018 ; owl:annotatedTarget "MS1 label-based analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002019 ; owl:annotatedTarget "Label-free raw feature quantitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002020 ; owl:annotatedTarget "Label-free peptide level quantitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000221 ; owl:annotatedTarget "The deflection of charged particles in a magnetic field due to a force equal to qvxB where q is the particle charge, v its velocity and B the magnetic field. Magnetic deflection of an ion beam is used for m/z separation in a magnetic sector mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002021 ; owl:annotatedTarget "Label-free protein level quantitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002022 ; owl:annotatedTarget "Label-free proteingroup level quantitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002023 ; owl:annotatedTarget "MS2 tag-based analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002024 ; owl:annotatedTarget "MS2 tag-based feature level quantitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002025 ; owl:annotatedTarget "MS2 tag-based peptide level quantitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002026 ; owl:annotatedTarget "MS2 tag-based protein level quantitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002027 ; owl:annotatedTarget "MS2 tag-based proteingroup level quantitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002028 ; owl:annotatedTarget "Nucleic acid base modification (substitution, insertion or deletion)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002029 ; owl:annotatedTarget "Specification of the original nucleic acid sequence, prior to a modification. The value slot should hold the DNA or RNA sequence."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002030 ; owl:annotatedTarget "Specification of the modified nucleic acid sequence. The value slot should hold the DNA or RNA sequence."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002031 ; owl:annotatedTarget "URI to retrieve transition group data for a PASSEL (PeptideAtlas SRM Experiment Library) experiment."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002032 ; owl:annotatedTarget "URI that allows access to a PeptideAtlas dataset."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002033 ; owl:annotatedTarget "Role of the contact person."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002034 ; owl:annotatedTarget "The first of a set of authors associated with a publication or release. There may be more than one first author in cases where several authors share primary attribution."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002035 ; owl:annotatedTarget "The last of a set of authors associated with a publication or release. There may be more than one senior author in cases where several authors share senior attribution."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002036 ; owl:annotatedTarget "One of a set of authors associated with a publication or release."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002037 ; owl:annotatedTarget "A person who submits a dataset to a repository."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002038 ; owl:annotatedTarget "A sample that has not been labelled or modified. This is often referred to as \"light\" to distinguish from \"heavy\"."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002039 ; owl:annotatedTarget "Inlet properties that are associated with a value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000222 ; owl:annotatedTarget "OBSOLETE The difference between the monoisotopic and nominal mass of a molecule or atom."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002040 ; owl:annotatedTarget "The temperature of the inlet of a mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002041 ; owl:annotatedTarget "The temperature of the source of a mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "http://chromatographyonline.findanalytichem.com/lcgc/Column:+Coupling+Matters/Nomenclature-and-Conventions-in-Comprehensive-Mult/ArticleStandard/Article/detail/58429"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002042 ; owl:annotatedTarget "The duration of a complete cycle of modulation in a comprehensive two-dimensional separation system, equals the length of a second dimension chromatogram, i.e., the time between two successive injections into the second column."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002043 ; owl:annotatedTarget "ProteinProspector software for data acquisition and analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002044 ; owl:annotatedTarget "The ProteinProspector result 'Score'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002045 ; owl:annotatedTarget "The ProteinProspector result 'Expectation value'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002046 ; owl:annotatedTarget "The original source path used for directory-based sources."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1074/mcp.M110.003731"^^xsd:string, "PMID:20829449"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002047 ; owl:annotatedTarget "MS-GF software used to re-score the peptide-spectrum matches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000014 ; owl:annotatedTarget "Accuracy is the degree of conformity of a measured mass to its actual value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000223 ; owl:annotatedTarget "OBSOLETE The sum of the protons and neutrons in an atom, molecule or ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002048 ; owl:annotatedTarget "MS-GF+ software used to analyze the spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002049 ; owl:annotatedTarget "MS-GF raw score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002050 ; owl:annotatedTarget "MS-GF de novo score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002051 ; owl:annotatedTarget "MS-GF energy score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002052 ; owl:annotatedTarget "MS-GF spectral E-value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002053 ; owl:annotatedTarget "MS-GF E-value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002054 ; owl:annotatedTarget "MS-GF Q-value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002055 ; owl:annotatedTarget "MS-GF peptide-level Q-value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002056 ; owl:annotatedTarget "MS-GF posterior error probability."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002057 ; owl:annotatedTarget "As parameter for search engine: apply the modification only at the N-terminus of a protein."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002058 ; owl:annotatedTarget "As parameter for search engine: apply the modification only at the C-terminus of a protein."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002059 ; owl:annotatedTarget "Microsoft Excel (can be used for spectral counting)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002060 ; owl:annotatedTarget "The name of the UniProtKB/TrEMBL database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002061 ; owl:annotatedTarget "OBSOLETE Decoy database from a TrEMBL protein sequence database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002062 ; owl:annotatedTarget "Metabolic labelling: natural N (mainly 14N)."^^xsd:string . [] oboInOwl:hasDbXref "http://www.medizinisches-proteom-center.de/software"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002063 ; owl:annotatedTarget "Software e.g. for SILAC and 14N/15N workflow, part of the PeakQuant suite."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002064 ; owl:annotatedTarget "Peptide consensus retention time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002065 ; owl:annotatedTarget "Peptide consensus mass/charge ratio."^^xsd:string . [] oboInOwl:hasDbXref "https://en.wikipedia.org/wiki/Molecular_mass"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000224 ; owl:annotatedTarget "Mass of a molecule measured in unified atomic mass units (u or Da)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002066 ; owl:annotatedTarget "Method used to calculate the ratio."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002067 ; owl:annotatedTarget "Protein quantification value calculated as median of peptide ratios."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002068 ; owl:annotatedTarget "Metabolic labelling: heavy N (mainly 15N)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002069 ; owl:annotatedTarget "Metabolic labelling: Description of labelling purity. Usually the purity of feeding material (e.g. 95%), or the inclusion rate derived from isotopic peak pattern shape."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002070 ; owl:annotatedTarget "Perform a t-test (two groups). Specify in string value, whether paired / unpaired, variance equal / different, one- / two-sided version is performed."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002071 ; owl:annotatedTarget "Perform an ANOVA-test (more than two groups). Specify in string value, which version is performed."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002072 ; owl:annotatedTarget "P-value as result of one of the processing steps described. Specify in the description, which processing step it was."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string, "http://www.psidev.info/mzidentml"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002073 ; owl:annotatedTarget "The mzIdentML format for peptide and protein identification data from the PSI. File extension '.mzid'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002074 ; owl:annotatedTarget "File format containing quantification results."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string, "http://www.psidev.info/mzquantml"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002075 ; owl:annotatedTarget "The mzQuantML format for quantification data from the PSI. File extension '.mzq'."^^xsd:string . [] oboInOwl:hasDbXref "http://code.google.com/p/ehu-bio/wiki/PAnalyzer"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002076 ; owl:annotatedTarget "PAnalyzer software for getting protein evidence categories."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002077 ; owl:annotatedTarget "Bruker Daltonics' impact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002078 ; owl:annotatedTarget "OBSOLETE ProteomeDiscoverer's 1st static post-translational modification (PTM) input parameter."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002079 ; owl:annotatedTarget "OBSOLETE ProteomeDiscoverer's 2nd static post-translational modification (PTM) input parameter."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002080 ; owl:annotatedTarget "Precursor clipping range before."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002081 ; owl:annotatedTarget "Precursor clipping range after."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000225 ; owl:annotatedTarget "OBSOLETE The mass of an ion or molecule calculated using the mass of the most abundant isotope of each element."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002082 ; owl:annotatedTarget "The time of elution from the first chromatographic column in the chromatographic separation step, relative to the start of chromatography on the first column."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002083 ; owl:annotatedTarget "The time of elution from the second chromatographic column in the chromatographic separation step, relative to the start of the chromatography on the second column."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002084 ; owl:annotatedTarget "Multidimensional chromatography modulation description."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002085 ; owl:annotatedTarget "Two-dimensional gas chromatography where a single modulation time is used throughout the acquisition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002086 ; owl:annotatedTarget "Two-dimensional gas chromatography where the acquisition is divided into steps, each with a different modulation time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000226 ; owl:annotatedTarget "OBSOLETE A mass spectrometry technique in which the sample is introduced into the mass spectrometer as a molecular beam."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002087 ; owl:annotatedTarget "Two-dimensional liquid chromatography where a single modulation time is used throughout the acquisition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002088 ; owl:annotatedTarget "Two-dimensional liquid chromatography where the acquisition is divided into steps, each with a different modulation time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002089 ; owl:annotatedTarget "XCorr threshold for storing peptides that do not belong to a protein."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002090 ; owl:annotatedTarget "Flag indicating that a probability score for the assessment that a reported peptide match is a random occurrence is calculated."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002091 ; owl:annotatedTarget "Delta Cn threshold for filtering out PSM's."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002092 ; owl:annotatedTarget "Algorithm (e.g. q-value or PEP) used for calculation of the validation score using Percolator."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000227 ; owl:annotatedTarget "Photoionization of an atom or molecule in which in two or more photons are absorbed."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002093 ; owl:annotatedTarget "Search engine input parameter."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002094 ; owl:annotatedTarget "Search engine input parameter that is shared by more than one search engine."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string, "source:http://www.matrixscience.com/help/search_field_help.html"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002095 ; owl:annotatedTarget "Search engine input parameters specific to Mascot."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string, "source:http://fields.scripps.edu/sequest/parameters.html"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002096 ; owl:annotatedTarget "Search engine input parameters specific to SEQUEST."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002097 ; owl:annotatedTarget "Search engine input parameters specific to Phenyx."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002098 ; owl:annotatedTarget "Search engine input parameters specific to ProteinExtractor."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002099 ; owl:annotatedTarget "Search engine input parameters specific to OMSSA."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002100 ; owl:annotatedTarget "Search engine input parameters specific to ProteinScape."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002101 ; owl:annotatedTarget "Search engine input parameters specific to ProteomeDiscoverer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002103 ; owl:annotatedTarget "Software input parameters."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000228 ; owl:annotatedTarget "OBSOLETE An organic molecule containing the elements C, H, O, S, P, or halogen has an odd nominal mass if it contains an odd number of nitrogen atoms."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002104 ; owl:annotatedTarget "Software input parameter that is shared by more than one software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002105 ; owl:annotatedTarget "Software specific input parameter."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002106 ; owl:annotatedTarget "Search engine input parameters specific to Scaffold."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002107 ; owl:annotatedTarget "Search engine input parameters specific to Percolator."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002108 ; owl:annotatedTarget "Indicates that a higher score is better."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002109 ; owl:annotatedTarget "Indicates that a lower score is better."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002110 ; owl:annotatedTarget "Attribute describing an assay."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002111 ; owl:annotatedTarget "Attribute describing an assay label."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000001 ; owl:annotatedTarget "A reference number relevant to the sample under study."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002112 ; owl:annotatedTarget "Attribute describing a protein group list."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002113 ; owl:annotatedTarget "Attribute describing a protein group."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002114 ; owl:annotatedTarget "Attribute describing a protein list."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002115 ; owl:annotatedTarget "Attribute describing a peptide consensus list."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002116 ; owl:annotatedTarget "Attribute describing a peptide consensus."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002117 ; owl:annotatedTarget "Attribute describing a small molecule list."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002118 ; owl:annotatedTarget "Attribute describing a small molecule."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002119 ; owl:annotatedTarget "Attribute describing a small molecule modification."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002120 ; owl:annotatedTarget "The name for identifying an experiment."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002121 ; owl:annotatedTarget "Dummy decribing a spectral count feature."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002122 ; owl:annotatedTarget "FeatureList of spectral counts."^^xsd:string . [] oboInOwl:hasDbXref "https://bessantlab.org/software/x-tracker/"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002123 ; owl:annotatedTarget "X-Tracker generic tool for quantitative proteomics."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1089/omi.2012.0022"^^xsd:string, "PMID:22804616"^^xsd:string, "http://www.proteosuite.org/"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002124 ; owl:annotatedTarget "ProteoSuite software for the analysis of quantitative proteomics data."^^xsd:string . [] oboInOwl:hasDbXref "PMID:19253293"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002125 ; owl:annotatedTarget "OBSOLETE FDRScore values specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002126 ; owl:annotatedTarget "The name of the UniProtKB knowledgebase."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002127 ; owl:annotatedTarget "Attribute describing an identification file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002128 ; owl:annotatedTarget "Attribute describing a method file format."^^xsd:string . [] oboInOwl:hasDbXref "http://www-bs2.informatik.uni-tuebingen.de/services/OpenMS/OpenMS-release/html/TOPP__ITRAQAnalyzer.html"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002129 ; owl:annotatedTarget "Software for iTRAQ workflow. Extracts and normalizes iTRAQ information from an MS experiment."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002130 ; owl:annotatedTarget "Attribute describing an identification file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000229 ; owl:annotatedTarget "OBSOLETE The mass of an ion or molecule calculated using the mass of the most abundant isotope of each element rounded to the nearest integer value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002131 ; owl:annotatedTarget "Noise filter component of the TOPP software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002132 ; owl:annotatedTarget "Removes noise from profile spectra by using a gaussian smoothing."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002133 ; owl:annotatedTarget "Removes noise from profile spectra by using a Savitzky-Golay smoothing."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002134 ; owl:annotatedTarget "Peak picker component of the TOPP software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002135 ; owl:annotatedTarget "Finds mass spectrometric peaks in high-resoluted profile mass spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002136 ; owl:annotatedTarget "Finds mass spectrometric peaks with a wavelet algorithm in low-resoluted profile mass spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002137 ; owl:annotatedTarget "Spectra filter component of the TOPP software."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1093/bioinformatics/bth947"^^xsd:string, "PMID:15262780"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002138 ; owl:annotatedTarget "Applies a Bern et al normalization to peak spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002139 ; owl:annotatedTarget "Applies a filter to peak spectra for marked peaks."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002140 ; owl:annotatedTarget "Retains the n largest peaks of a peak spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000230 ; owl:annotatedTarget "OBSOLETE Odd-electron ions may dissociate to form either odd or even-electron ions, whereas even-electron ions generally form even-electron fragment ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002141 ; owl:annotatedTarget "Applies a TIC/maximal intensity normalization to peak spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002142 ; owl:annotatedTarget "Filters putative unfragmented precursor ions from tandem spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002143 ; owl:annotatedTarget "Applies a filter to peak spectra after intensity scaling according to rank."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002144 ; owl:annotatedTarget "Applies a filter to peak spectra after intensity scaling to the square root."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002145 ; owl:annotatedTarget "Applies a filter of peaks below a given threshold to peak spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002146 ; owl:annotatedTarget "Applies a filter of the largest peaks in a sliding window over a peak spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002147 ; owl:annotatedTarget "Map aligner component of the TOPP software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002148 ; owl:annotatedTarget "Corrects retention time distortions between maps based on common peptide identifications."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002149 ; owl:annotatedTarget "Corrects retention time distortions between maps using a pose clustering approach."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002150 ; owl:annotatedTarget "Corrects retention time distortions between maps by spectrum alignment."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002151 ; owl:annotatedTarget "Attribute describing the data type of the numerator of a ratio."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002152 ; owl:annotatedTarget "Attribute describing the data type of the denominator of a ratio."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002153 ; owl:annotatedTarget "The number of spectra identified for this protein in spectral counting."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002154 ; owl:annotatedTarget "Extracts spectra of an MS run file to several files in DTA format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002155 ; owl:annotatedTarget "Merges several protein/peptide identification files into one file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002156 ; owl:annotatedTarget "Converts identification engine file formats."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002157 ; owl:annotatedTarget "Merges spectra from an LC/MS map, either by precursor or by RT blocks."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002158 ; owl:annotatedTarget "Exports various XML formats to an mzTab file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002159 ; owl:annotatedTarget "Annotates mass traces in centroided LC/MS maps."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000231 ; owl:annotatedTarget "A localized region of relatively large ion signal in a mass spectrum. Although peaks are often associated with particular ions, the terms peak and ion should not be used interchangeably."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002160 ; owl:annotatedTarget "Correct the precursor entries of tandem MS scans."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002161 ; owl:annotatedTarget "Performs precursor mz correction on centroided high resolution data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002162 ; owl:annotatedTarget "Computes an additive series to quantify a peptide in a set of samples."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002163 ; owl:annotatedTarget "Decharges and merges different feature charge variants of the same chemical entity."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002164 ; owl:annotatedTarget "Quantifies signals at given positions in (raw or picked) LC/MS maps."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002165 ; owl:annotatedTarget "Feature finder component of the TOPP software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002166 ; owl:annotatedTarget "Detects two-dimensional features in centroided LC-MS data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002167 ; owl:annotatedTarget "Detects two-dimensional features in uncentroided LC-MS data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002168 ; owl:annotatedTarget "Detects two-dimensional features in uncentroided LC-MS data with a wavelet algorithm."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002169 ; owl:annotatedTarget "Detects two-dimensional features in centroided LC-MS data of metabolites."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000232 ; owl:annotatedTarget "OBSOLETE The height or area of a peak in a mass spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002170 ; owl:annotatedTarget "Quantifies features LC-MS/MS MRM data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002171 ; owl:annotatedTarget "Computes protein abundances from annotated feature/consensus maps."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002172 ; owl:annotatedTarget "Normalizes maps of one consensus XML file (after linking)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002173 ; owl:annotatedTarget "Applies retention time transformations to maps."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002174 ; owl:annotatedTarget "Feature linker component of the TOPP software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002175 ; owl:annotatedTarget "Groups corresponding isotope-labeled features in a feature map."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002176 ; owl:annotatedTarget "Groups corresponding features from multiple maps."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002177 ; owl:annotatedTarget "Groups corresponding features from multiple maps using a quality threshold clustering approach."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002178 ; owl:annotatedTarget "Performs a peptide/protein identification with the CompNovo engine."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002179 ; owl:annotatedTarget "Performs a peptide/protein identification with the CompNovo engine in collision-induced dissociation (CID) mode."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002180 ; owl:annotatedTarget "Software adaptor to an external program in the TOPP software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002181 ; owl:annotatedTarget "Identifies MS2 spectra using the external program Inspect."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002182 ; owl:annotatedTarget "Identifies MS2 spectra using the external program Mascot."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002183 ; owl:annotatedTarget "Identifies MS2 spectra using the online version of the external program Mascot."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002184 ; owl:annotatedTarget "Identifies MS2 spectra using the external program OMSSA."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002185 ; owl:annotatedTarget "Identifies MS2 spectra using the external program PepNovo."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002186 ; owl:annotatedTarget "Identifies MS2 spectra using the external program XTandem."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002187 ; owl:annotatedTarget "Identifies peptide MS2 spectra by spectral matching with a searchable spectral library."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002188 ; owl:annotatedTarget "Computes a consensus identification from peptide identifications of several identification engines."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002189 ; owl:annotatedTarget "Resolves ambiguous annotations of features with peptide identifications."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000233 ; owl:annotatedTarget "OBSOLETE The proton affinity of a species M is defined as the negative of the enthalpy change for the reaction M + H+ ->[M+H]+, where all species are in their ground rotational, vibrational and electronic states."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002190 ; owl:annotatedTarget "Filters results from protein or peptide identification engines based on different criteria."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002191 ; owl:annotatedTarget "Assigns protein/peptide identifications to feature or consensus features."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002192 ; owl:annotatedTarget "Estimates posterior error probabilities using a mixture model."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002193 ; owl:annotatedTarget "Calibrate Retention times of peptide hits to standards."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002194 ; owl:annotatedTarget "Refreshes the protein references for all peptide hits."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002195 ; owl:annotatedTarget "A tool for precursor ion selection based on identification results."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002196 ; owl:annotatedTarget "MRMMapper maps measured chromatograms (mzML) and the transitions used (TraML)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002197 ; owl:annotatedTarget "OpenSwath component of the TOPP software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002198 ; owl:annotatedTarget "Picks peaks and finds features in an SRM experiment."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002199 ; owl:annotatedTarget "Extract chromatograms (XIC) from a MS2 map file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:MS_1000233 ; owl:annotatedTarget "PA"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002200 ; owl:annotatedTarget "Generates decoys according to different models for a specific TraML."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002201 ; owl:annotatedTarget "Converts a featureXML to a mProphet tsv (tab separated values)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002202 ; owl:annotatedTarget "Generates a transformation file for retention time space into normalized space."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002203 ; owl:annotatedTarget "Infer proteins from a list of (high-confidence) peptides."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002204 ; owl:annotatedTarget "Estimates the false discovery rate on peptide and protein level using decoy searches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002205 ; owl:annotatedTarget "Converts, filters, and processes mass spectrometry data in variety of formats."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002206 ; owl:annotatedTarget "Converts, filters, and processes identifications from shotgun proteomics experiments."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002207 ; owl:annotatedTarget "Filters and processes protein sequence databases."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002208 ; owl:annotatedTarget "Filters, processes, and displays mass spectrometry data in a variety of ways."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002209 ; owl:annotatedTarget "An interactive GUI application to view and filter mass spectrometry data in a variety of formats."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1021/pr1009977"^^xsd:string, "PMID:21067241"^^xsd:string, "http://folk.uio.no/magnusar/isobariq"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002210 ; owl:annotatedTarget "A quantitative software package designed for analysis of IPTL, TMT and iTRAQ data."^^xsd:string . [] oboInOwl:hasDbXref "PMID:16646781"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002211 ; owl:annotatedTarget "The model incorporates data calibration (normalization), a model for the dependence of the variance on the mean intensity, and a variance stabilizing data transformation."^^xsd:string . [] oboInOwl:hasDbXref "PMID:19655813"^^xsd:string, "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002212 ; owl:annotatedTarget "Quantification analysis using a labelling strategy where both peptide termini are labelled so that the peptides from different labelling schema are isobaric."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002213 ; owl:annotatedTarget "A protein identified by at least one unique (distinct, discrete) peptide (peptides are considered different only if they can be distinguished by evidence in mass spectrum)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002214 ; owl:annotatedTarget "A member of a group of proteins sharing all peptides that are exclusive to the group (peptides are considered different only if they can be distinguished by evidence in mass spectrum)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002215 ; owl:annotatedTarget "A protein sharing all its matched peptides with either conclusive or indistinguishable proteins (peptides are considered different only if they can be distinguished by evidence in mass spectrum)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000234 ; owl:annotatedTarget "OBSOLETE In a mass spectrum, the observed mass divided by the difference between two masses that can be separated. The method by which delta m was obtained and the mass at which the measurement was made should be reported."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002216 ; owl:annotatedTarget "A protein sharing at least one peptide not matched to either conclusive or indistinguishable proteins (peptides are considered different only if they can be distinguished by evidence in mass spectrum)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002217 ; owl:annotatedTarget "A putative identified peptide issued from a decoy sequence database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002218 ; owl:annotatedTarget "Collision energy at the start of the collision energy ramp in percent, normalized to the mass of the ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002219 ; owl:annotatedTarget "Collision energy at the end of the collision energy ramp in percent, normalized to the mass of the ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002220 ; owl:annotatedTarget "A web-based SRM assay design tool whose transitions are generated by mining the millions of identified peptide spectra held in the EBI's PRIDE database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000235 ; owl:annotatedTarget "Representation of the total ion current detected in each of a series of mass spectra versus time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002221 ; owl:annotatedTarget "Score in MRMaid to indicate the expected performance of the peptide in SRM."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002222 ; owl:annotatedTarget "Attribute associated with a SRM transition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002223 ; owl:annotatedTarget "Probability of detecting precursor when parent protein is present."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002224 ; owl:annotatedTarget "Probability of detecting product ion when precursor ion is present."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002225 ; owl:annotatedTarget "Average value of product ion intensity in a collection of identified spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002226 ; owl:annotatedTarget "Standard deviation of product ion intensity in a collection of identified spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002227 ; owl:annotatedTarget "The number of times the specific product ion has been observed in a series of SRM experiments."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000236 ; owl:annotatedTarget "The ratio of the number of ions leaving a region of a mass spectrometer to the number entering that region."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002228 ; owl:annotatedTarget "The number of times the specific precursor ion has been observed in a series of SRM experiments."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002229 ; owl:annotatedTarget "Calculated relaxed significance when performing a decoy search for high-confidence peptides."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002230 ; owl:annotatedTarget "Calculated relaxed significance when performing a decoy search for medium-confidence peptides."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002231 ; owl:annotatedTarget "([A-Fa-f0-9]{8}-([A-Fa-f0-9]{4}-){3}[A-Fa-f0-9]{12})."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002232 ; owl:annotatedTarget "The default FDR calculator as globally unique identifier (GUID)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002233 ; owl:annotatedTarget "Flag indicating if low-resolution spectra are taken into consideration."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000237 ; owl:annotatedTarget "OBSOLETE A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground state and equal to 1.660 538 86(28) x 10^-27 kg."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002234 ; owl:annotatedTarget "Mass-to-charge ratio of a precursor ion selected for fragmentation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002235 ; owl:annotatedTarget "A score assigned to a single protein accession (modelled as ProteinDetectionHypothesis in mzIdentML), based on summed peptide level scores."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002236 ; owl:annotatedTarget "A score assigned to a protein group (modelled as ProteinAmbiguityGroup in mzIdentML), based on all summed peptide level scores that have been assigned to the group as unique or razor peptides."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002237 ; owl:annotatedTarget "A library of Java routines for manipulating mzIdentML files."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002238 ; owl:annotatedTarget "A converter for OMSSA OMX to mzIdentML."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002239 ; owl:annotatedTarget "A converter for Tandem XML to mzIdentML."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000238 ; owl:annotatedTarget "OBSOLETE A mass spectrometry technique in which atoms extracted from a sample are ionized, accelerated to MeV energies and separated according to their momentum, charge and energy."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002240 ; owl:annotatedTarget "A converter for CSV files (following OMSSA CSV style) to mzIdentML."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002241 ; owl:annotatedTarget "A generic and parameterizable protein inference algorithm for mzIdentML files."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002242 ; owl:annotatedTarget "A routine for keeping only identifications passing a given threshold or setting passThreshold to true or false for SpectrumIdentificationItem or ProteinDetectionHypothesis in mzIdentML files."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002243 ; owl:annotatedTarget "A routine for adding emPAI quantitative values to an mzIdentML file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002244 ; owl:annotatedTarget "A routine for calculating local FDR, q-value and FDRScore for mzIdentML files, based on a decoy search."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002245 ; owl:annotatedTarget "A tool for converting mzIdentML files to CSV format."^^xsd:string . [] oboInOwl:hasDbXref "PMID:19253293"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002246 ; owl:annotatedTarget "A tool for combining results analysed in parallel in two or three search engines into a single mzIdentML file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002247 ; owl:annotatedTarget "A tool for adding additional meta data from a FASTA file to DBSequence entries (sequence and description) in mzIdentML files."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002248 ; owl:annotatedTarget "The SEQUEST result 'SpScore'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000239 ; owl:annotatedTarget "Matrix-assisted laser desorption ionization in which the sample target is at atmospheric pressure and the ions formed by the pulsed laser are sampled through a small aperture into the mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002249 ; owl:annotatedTarget "The SEQUEST result 'SpRank'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002250 ; owl:annotatedTarget "The SEQUEST result 'DeltaCnStar'."^^xsd:string . [] oboInOwl:hasDbXref "PMID:23148064"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002251 ; owl:annotatedTarget "Comet open-source sequence search engine developed at the University of Washington."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002252 ; owl:annotatedTarget "The Comet result 'XCorr'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002253 ; owl:annotatedTarget "The Comet result 'DeltaCn'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000240 ; owl:annotatedTarget "Any ionization process in which ions are formed in the gas phase at atmospheric pressure."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002254 ; owl:annotatedTarget "The Comet result 'DeltaCnStar'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002255 ; owl:annotatedTarget "The Comet result 'SpScore'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002256 ; owl:annotatedTarget "The Comet result 'SpRank'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002257 ; owl:annotatedTarget "The Comet result 'Expectation value'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002258 ; owl:annotatedTarget "The Comet result 'Matched Ions'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000241 ; owl:annotatedTarget "OBSOLETE Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002259 ; owl:annotatedTarget "The Comet result 'Total Ions'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002260 ; owl:annotatedTarget "False-discovery rate threshold for peptide-spectrum matches."^^xsd:string . [] oboInOwl:hasDbXref "PMID:23255153"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002261 ; owl:annotatedTarget "Byonic search engine from Protein Metrics."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002262 ; owl:annotatedTarget "The Byonic score is the primary indicator of PSM correctness. The Byonic score reflects the absolute quality of the peptide-spectrum match, not the relative quality compared to other candidate peptides. Byonic scores range from 0 to about 1000, with 300 a good score, 400 a very good score, and PSMs with scores over 500 almost sure to be correct."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000015 ; owl:annotatedTarget "Rate in Th/sec for scanning analyzers."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000242 ; owl:annotatedTarget "A special case of infrared multiphoton dissociation wherein excitation of the reactant ion is caused by absorption of infrared photons radiating from heated blackbody surroundings, which are usually the walls of a vacuum chamber. See also infrared multiphoton dissociation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002263 ; owl:annotatedTarget "The drop in Byonic score from the top-scoring peptide to the next peptide with distinct sequence. In this computation, the same peptide with different modifications is not considered distinct."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002264 ; owl:annotatedTarget "The drop in Byonic score from the top-scoring peptide to the next peptide different in any way, including placement of modifications. DeltaMod gives an indication of whether modifications are confidently localized; DeltaMod over 10.0 means that there is high likelihood that all modification placements are correct."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002265 ; owl:annotatedTarget "Byonic posterior error probability."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002266 ; owl:annotatedTarget "The log p-value of the PSM. This is the log of the probability that the PSM with such a score and delta would arise by chance in a search of this size (the size of the protein database, as expanded by the modification rules). A log p-value of -3.0 should happen by chance on only one of a thousand spectra. Caveat: it is very hard to compute a p-value that works for all searches and all spectra, so read Byonic p-values with a certain amount of skepticism."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000243 ; owl:annotatedTarget "OBSOLETE A fragmentation of an even-electron ion in which the cleaved bond is not adjacent to the apparent charge site."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002267 ; owl:annotatedTarget "The log p-value of the protein."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002268 ; owl:annotatedTarget "Best (most negative) log p-value of an individual PSM."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002269 ; owl:annotatedTarget "Best (largest) Byonic score of a PSM."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002270 ; owl:annotatedTarget "A technique by which molecules are separated by chemical and physical properties such as hydrophobicity or vapour pressure."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000244 ; owl:annotatedTarget "OBSOLETE MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002271 ; owl:annotatedTarget "Liquid chromatography (LC) is a separation technique in which the mobile phase is a liquid."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002272 ; owl:annotatedTarget "Gas chromatography (GC) is a separation technique in which the mobile phase is a gas."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002273 ; owl:annotatedTarget "Detector potential difference in volts."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002274 ; owl:annotatedTarget "Waters quadrupole based SQ Detector 2."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002275 ; owl:annotatedTarget "Waters oa-ToF based Xevo G2-S Tof."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002276 ; owl:annotatedTarget "Waters oa-ToF based Xevo G2-S QTof."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002277 ; owl:annotatedTarget "Waters AutoSpec Premier magnetic sector instrument."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002278 ; owl:annotatedTarget "LECO nominal mass resolution time-of-flight GC mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000245 ; owl:annotatedTarget "The reaction of a positive ion with an atom or molecule that results in the removal of one or more electrons from the ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002279 ; owl:annotatedTarget "Bruker Daltonics' maXis 4G: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002280 ; owl:annotatedTarget "Bruker Daltonics' compact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002281 ; owl:annotatedTarget "Selected Reaction Monitoring feature level quantitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002282 ; owl:annotatedTarget "Selected Reaction Monitoring peptide level quantitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002283 ; owl:annotatedTarget "Selected Reaction Monitoring protein level quantitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002284 ; owl:annotatedTarget "Selected Reaction Monitoring proteingroup level quantitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002285 ; owl:annotatedTarget "A suite of open source tools for the processing of MS2 proteomics data developed by the Seattle Proteome Center at the Institute for Systems Biology."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002286 ; owl:annotatedTarget "A software program that is a component of the Trans-Proteomic Pipeline."^^xsd:string . [] oboInOwl:hasDbXref "PMID:12403597"^^xsd:string, "PMID:23176103"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002287 ; owl:annotatedTarget "A program in the TPP that calculates PSM probabilities for MS2 proteomics data searched with any of the supported sequence or spectral library search engines via the pepXML format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000246 ; owl:annotatedTarget "The application of the accelerating voltage pulse after a time delay in desorption ionization from a surface. The extraction delay can produce energy focusing in a time-of-flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PMID:21876204"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002288 ; owl:annotatedTarget "A program in the TPP that calculates distinct peptide probabilities based on several lines of corroborating evidence including search results from multiple search engines via the pepXML format."^^xsd:string . [] oboInOwl:hasDbXref "PMID:14632076"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002289 ; owl:annotatedTarget "A program in the TPP that calculates protein-level probabilities based on input PSM or peptide-level probabilities from PeptideProphet or iProphet. The output is written in the protXML format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002290 ; owl:annotatedTarget "A program in the TPP that calculates PSM-level abundances based on 2-channel isotope-labelled data such as ICAT, SILAC, etc."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002291 ; owl:annotatedTarget "A program in the TPP that calculates PSM, peptide, and protein-level abundances based on N-channel isobaric label peptide data such as iTRAQ, TMT, etc."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002292 ; owl:annotatedTarget "A program in the TPP that calculates PTM localization probabilities by re-analyzing the peaks that are available to distinguish between possible modification sites."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002293 ; owl:annotatedTarget "Bruker Daltonics' SCION series."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002294 ; owl:annotatedTarget "Bruker Daltonics' EVOQ series."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002295 ; owl:annotatedTarget "Bruker Daltonics' SCION SQ: GC-single quadrupole."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002296 ; owl:annotatedTarget "Bruker Daltonics' SCION TQ: GC-triple quadrupole."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002297 ; owl:annotatedTarget "Bruker Daltonics' EVOQ Elite: LC-triple quadrupole."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000247 ; owl:annotatedTarget "The formation of ions from a solid or liquid material after the rapid vaporization of that sample."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002298 ; owl:annotatedTarget "Bruker Daltonics' EVOQ Qube: LC-triple quadrupole."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002299 ; owl:annotatedTarget "Bruker Daltonics' micrOTOF-Q III: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002300 ; owl:annotatedTarget "Bruker Daltonics' amaZon Speed ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR, GC-APCI, CaptiveSpray."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002301 ; owl:annotatedTarget "Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002302 ; owl:annotatedTarget "Bruker Container raw file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002303 ; owl:annotatedTarget "Native identifier (UUID)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002304 ; owl:annotatedTarget "Domain range of a numerical value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002305 ; owl:annotatedTarget "Value range for probabilities."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000248 ; owl:annotatedTarget "A device for introducing a solid or liquid sample into a mass spectrometer ion source for desorption ionization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002306 ; owl:annotatedTarget "Positive value range."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002307 ; owl:annotatedTarget "Type of fragment ion based on where the backbone breaks, such as a y ion or a c ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002308 ; owl:annotatedTarget "A detector using a fluorescent signal after excitation with light."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002309 ; owl:annotatedTarget "The absolute value of the log-base10 of the Byonic posterior error probability (PEP) of the PSM."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002310 ; owl:annotatedTarget "The absolute value of the log-base10 of the Byonic posterior error probability (PEP) of the protein."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000249 ; owl:annotatedTarget "The delivery of a liquid sample into a mass spectrometer for spray or desorption ionization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002311 ; owl:annotatedTarget "The absolute value of the log-base10 Byonic two-dimensional posterior error probability (PEP) of the PSM. The two-dimensional PEP takes into account protein ranking information as well as PSM information."^^xsd:string . [] oboInOwl:hasDbXref "https://github.com/ms-numpress/ms-numpress"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002312 ; owl:annotatedTarget "Compression using MS-Numpress linear prediction compression."^^xsd:string . [] oboInOwl:hasDbXref "https://github.com/ms-numpress/ms-numpress"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002313 ; owl:annotatedTarget "Compression using MS-Numpress positive integer compression."^^xsd:string . [] oboInOwl:hasDbXref "https://github.com/ms-numpress/ms-numpress"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002314 ; owl:annotatedTarget "Compression using MS-Numpress short logged float compression."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002315 ; owl:annotatedTarget "Indicates a consensus result from several search engine runs."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002316 ; owl:annotatedTarget "Strict confidence probability score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002317 ; owl:annotatedTarget "Relaxed confidence probability score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000250 ; owl:annotatedTarget "A process in which a multiply protonated molecules interacts with a low energy electrons. Capture of the electron leads the liberation of energy and a reduction in charge state of the ion with the production of the (M + nH) (n-1)+ odd electron ion, which readily fragments."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002318 ; owl:annotatedTarget "Flag indicating automatic estimation of the workload level."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002319 ; owl:annotatedTarget "The Amanda score of the scoring function for a PSM."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002320 ; owl:annotatedTarget "Maximum dynamic modifications per PSM."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002321 ; owl:annotatedTarget "Maximum equal modifications per PSM."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002322 ; owl:annotatedTarget "Minimum peptide length."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000251 ; owl:annotatedTarget "OBSOLETE An ion containing no unpaired electrons in its ground electronic state, e.g. CH3+ in its ground state."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002323 ; owl:annotatedTarget "Maximum peptide length."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002324 ; owl:annotatedTarget "Maximum number of same neutral losses."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002325 ; owl:annotatedTarget "Max number of same neutral losses of modifications."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002326 ; owl:annotatedTarget "Flag for usage of flanking ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002327 ; owl:annotatedTarget "The maximum number of possible equal modifications per PSM."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000252 ; owl:annotatedTarget "OBSOLETE The reaction of an ion with an electron in which the translational energy of the collision is converted into internal energy of the ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002328 ; owl:annotatedTarget "Defines whether a simple deisotoping shall be performed."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002329 ; owl:annotatedTarget "Specifies the fragment ions and neutral losses that are calculated."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002330 ; owl:annotatedTarget "OBSOLETE ProteomeDiscoverer's 3rd static post-translational modification (PTM) input parameter."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002331 ; owl:annotatedTarget "OBSOLETE ProteomeDiscoverer's 5th dynamic post-translational modification (PTM) input parameter."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002332 ; owl:annotatedTarget "The scientist responsible for personnel, grants, and instrumentation in a functional laboratory group."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002333 ; owl:annotatedTarget "Computer software primarily designed to convert data represented in one format to another format, sometimes with minor data alterations in the process."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000253 ; owl:annotatedTarget "A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons. The secondary electrons are then accelerated to other electrodes or parts of a continuous electrode to produce further secondary electrons."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string, "http://www.medizinisches-proteom-center.de/procon"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002334 ; owl:annotatedTarget "Java software designed to convert one of several proteomics identification results formats into mzIdentML or PRIDE XML."^^xsd:string . [] oboInOwl:hasDbXref "PMID:22949509"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002335 ; owl:annotatedTarget "Java software designed to convert one of several proteomics identification results formats into PRIDE XML."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002336 ; owl:annotatedTarget "Amanda scoring system for PSM identification."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002337 ; owl:annotatedTarget "Andromeda is a peptide search engine."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002338 ; owl:annotatedTarget "The probability based score of the Andromeda search engine."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002339 ; owl:annotatedTarget "Estimation of global false discovery rate of peptides with a post-translational modification."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000254 ; owl:annotatedTarget "A device consisting of conducting parallel plates, concentric cylinders or concentric spheres that separates charged particles according to their kinetic energy by means of an electric field that is constant in time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002340 ; owl:annotatedTarget "Tag that can be added to a ProteomeXchange dataset, to enable the grouping of datasets. One tag can be used for indicating that a given dataset is part of a bigger project, like e.g. the Human Proteome Project."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002341 ; owl:annotatedTarget "A putative identified peptide found in a second-pass search of protein sequences selected from a first-pass search."^^xsd:string . [] oboInOwl:hasDbXref "PMID:16403790"^^xsd:string, "PMID:20650010"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002342 ; owl:annotatedTarget "A framework for differential analysis of mass spectrometry data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002343 ; owl:annotatedTarget "OBSOLETE Stability type of the ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string, "http://maltcms.sf.net"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002344 ; owl:annotatedTarget "Modular Application Toolkit for Chromatography Mass-Spectrometry is an application framework mainly for developers."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002345 ; owl:annotatedTarget "Attribute of a single peptide-spectrum match."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002346 ; owl:annotatedTarget "Protein group level information."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002347 ; owl:annotatedTarget "Identification confidence metric for a peptide spectrum match."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002348 ; owl:annotatedTarget "Identification confidence metric for a protein group."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000255 ; owl:annotatedTarget "An ion source immersed in a flow of helium or other inert buffer gas that carries the ions through a meter-long reactor at pressures around 100 Pa."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002349 ; owl:annotatedTarget "Positive value range less than or equal to 1."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002350 ; owl:annotatedTarget "Estimation of the global false discovery rate of peptide spectrum matches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002351 ; owl:annotatedTarget "Estimation of the local false discovery rate of peptide spectrum matches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002352 ; owl:annotatedTarget "Estimation of the p-value for peptide spectrum matches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000256 ; owl:annotatedTarget "OBSOLETE The separation of ions between two concentric cylindrical electrodes due to application of a high voltage asymmetric waveform whereby ions migrate towards one of the two electrodes depending on the ratio of the high- to low-field mobility of the ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002353 ; owl:annotatedTarget "Estimation of the e-value for peptide spectrum matches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002354 ; owl:annotatedTarget "Estimation of the q-value for peptide spectrum matches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002355 ; owl:annotatedTarget "mzidLibrary FDRScore for peptide spectrum matches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000257 ; owl:annotatedTarget "The formation of gas-phase ions from a material deposited on a solid surface in the presence of a high electric field. Because this process may encompass ionization by field ionization or other mechanisms, it is not recommended as a synonym for field desorption ionization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002356 ; owl:annotatedTarget "mzidLibrary Combined FDRScore for peptide spectrum matches specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002357 ; owl:annotatedTarget "Probability that the reported peptide ion is truly responsible for some or all of the components of the specified mass spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002358 ; owl:annotatedTarget "Search engine specific distinct peptide score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002359 ; owl:annotatedTarget "Estimation of the local false discovery rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000258 ; owl:annotatedTarget "The removal of electrons from any species by interaction with a high electric field."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002360 ; owl:annotatedTarget "MzidLibrary FDRScore for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002361 ; owl:annotatedTarget "Combined FDRScore for peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry) specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given peptide, used for integrating results from these distinct pools."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002362 ; owl:annotatedTarget "Probability that the reported distinct peptide sequence (irrespective of mass modifications) has been correctly identified via the referenced PSMs."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002363 ; owl:annotatedTarget "Search engine specific protein scores."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000259 ; owl:annotatedTarget "The formation of ions in the gas phase and from solid samples at the cathode by application of a voltage to a low pressure gas."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002364 ; owl:annotatedTarget "Estimation of the local false discovery rate of proteins."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002365 ; owl:annotatedTarget "MzidLibrary FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002366 ; owl:annotatedTarget "MzidLibrary Combined FDRScore for proteins."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002367 ; owl:annotatedTarget "Probability that a specific protein sequence has been correctly identified from the PSM and distinct peptide evidence, and based on the available protein sequences presented to the analysis software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000260 ; owl:annotatedTarget "OBSOLETE A method of analysis in which a beam of ions is separated according to the ratio of its translational energy to charge."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002368 ; owl:annotatedTarget "Search engine specific protein group scores."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002369 ; owl:annotatedTarget "Estimation of the global false discovery rate of protein groups."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002370 ; owl:annotatedTarget "Estimation of the local false discovery rate of protein groups."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002371 ; owl:annotatedTarget "Estimation of the p-value for protein groups."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000261 ; owl:annotatedTarget "OBSOLETE The separation of ions according to their velocity through a buffer gas under the influence of an electric field."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002372 ; owl:annotatedTarget "Estimation of the e-value for protein groups."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002373 ; owl:annotatedTarget "Estimation of the q-value for protein groups."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002374 ; owl:annotatedTarget "mzidLibrary FDRScore for protein groups."^^xsd:string . [] oboInOwl:hasDbXref "PMID:19253293"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002375 ; owl:annotatedTarget "mzidLibrary Combined FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000262 ; owl:annotatedTarget "Multiphoton ionization where the reactant ion dissociates as a result of the absorption of multiple infrared photons."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002376 ; owl:annotatedTarget "Probability that at least one of the members of a group of protein sequences has been correctly identified from the PSM and distinct peptide evidence, and based on the available protein sequences presented to the analysis software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002377 ; owl:annotatedTarget "Specifies the threshold value for relaxed scoring."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002378 ; owl:annotatedTarget "Specifies the threshold value for strict scoring."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002379 ; owl:annotatedTarget "Cut off score for storing peptides that do not belong to a protein."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000263 ; owl:annotatedTarget "OBSOLETE The measurement of the relative quantity of the different isotopes of an element in a material with a mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002380 ; owl:annotatedTarget "Estimation of the false localization rate for modification site assignment."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002381 ; owl:annotatedTarget "Software for automated LC-MALDI analysis and reporting."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002382 ; owl:annotatedTarget "Shimadzu MALDI-7090: MALDI-TOF-TOF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002383 ; owl:annotatedTarget "SCiLS software for data acquisition and analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002384 ; owl:annotatedTarget "SCiLS Lab software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002385 ; owl:annotatedTarget "SCiLS Lab file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002386 ; owl:annotatedTarget "Preprocessing software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string, "http://www.medizinisches-proteom-center.de/pia"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002387 ; owl:annotatedTarget "PIA - Protein Inference Algorithms, a toolbox for protein inference and identification analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002388 ; owl:annotatedTarget "A compilation of search engine results in the PIA XML format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002389 ; owl:annotatedTarget "A parameter set for a single PIA analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000264 ; owl:annotatedTarget "A device for spatially confining ions using electric and magnetic fields alone or in combination."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002390 ; owl:annotatedTarget "Indicates whether the FDR score was calculated for the input file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002391 ; owl:annotatedTarget "Indicates whether the combined FDR score was calculated for the PIA compilation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002392 ; owl:annotatedTarget "Indicates whether PSM sets were created."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002393 ; owl:annotatedTarget "The number of top identifications per spectrum used for the FDR calculation, 0 means all."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000265 ; owl:annotatedTarget "OBSOLETE Distribution of values of translational kinetic energy release for an ensemble of metastable ions undergoing a specific dissociation reaction."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002394 ; owl:annotatedTarget "The score given to a protein by any protein inference."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002395 ; owl:annotatedTarget "The used algorithm for the protein inference using PIA."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002396 ; owl:annotatedTarget "A filter used by PIA for the protein inference."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002397 ; owl:annotatedTarget "The used scoring method for the protein inference using PIA."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002398 ; owl:annotatedTarget "The used base score for the protein inference using PIA."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000266 ; owl:annotatedTarget "OBSOLETE The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002399 ; owl:annotatedTarget "The method to determine the PSMs used for scoring by the protein inference."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002400 ; owl:annotatedTarget "A filter used for the report generation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002401 ; owl:annotatedTarget "At least one protein within each group should be annotated as a leading protein to indicate it has the strongest evidence, or approximately equal evidence as other group members."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002402 ; owl:annotatedTarget "Zero to many proteins within each group should be annotated as non-leading to indicate that other proteins have stronger evidence."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002403 ; owl:annotatedTarget "An arbitrary and optional flag applied to exactly one protein per group to indicate it can serve as the representative of the group, amongst leading proteins, in effect serving as a tiebreaker for approaches that require exactly one group representative."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002404 ; owl:annotatedTarget "The number of proteins that have been identified, which must match the number of groups that pass the threshold in the file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002405 ; owl:annotatedTarget "Details describing a protein cluster."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000267 ; owl:annotatedTarget "OBSOLETE Spectra that are obtained from a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector in reverse geometry. The accelerating voltage, V, and the magnetic sector field, B, are set at fixed values to select the precursor ions, which are then allowed to dissociate or to react in a field free region between the two sectors. The kinetic energy product ions of m/z selected precursor ions is analyzed by scanning the electric sector field, E. The width of the product ion spectrum peaks is related to the kinetic energy release distribution (KERD) for the dissociation process."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1002/pmic.201400080"^^xsd:string, "PMID:25092112"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002406 ; owl:annotatedTarget "The number of protein clusters that have been identified, which must match the number of clusters that pass the threshold in the file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002407 ; owl:annotatedTarget "An identifier applied to protein groups to indicate that they are linked by shared peptides."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002408 ; owl:annotatedTarget "The number of protein clusters that have been identified, which must match the number of clusters that pass the threshold in the file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002409 ; owl:annotatedTarget "Assigned to a non-leading protein that has some independent evidence to support its presence relative to the leading protein(s), e.g. the protein may have a unique peptide but not sufficient to be promoted as a leading protein of another group."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string, "http://quantitativeproteomics.org/anubis"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002410 ; owl:annotatedTarget "Anubis software for selected reaction monitoring data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string, "http://www.psidev.info/traml"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002411 ; owl:annotatedTarget "The TraML format for transitions in SRM from the PSI. File extension '.TraML'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002412 ; owl:annotatedTarget "Summed area of all the extracted ion chromatogram for the peptide (e.g. of all the transitions in SRM)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000268 ; owl:annotatedTarget "OBSOLETE The branch of science that deals with all aspects of mass spectrometers and the results obtained with these instruments."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002413 ; owl:annotatedTarget "The background area for the quantified transition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002414 ; owl:annotatedTarget "Postprocessing software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002415 ; owl:annotatedTarget "A Boolean attribute to determine whether the protein group has passed the threshold indicated in the file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002416 ; owl:annotatedTarget "Thermo Scientific Orbitrap Fusion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002417 ; owl:annotatedTarget "Thermo Scientific Orbitrap Fusion with ETD."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002418 ; owl:annotatedTarget "Thermo Scientific TSQ Quantiva MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002419 ; owl:annotatedTarget "Thermo Scientific TSQ Endura MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000269 ; owl:annotatedTarget "OBSOLETE The acquisition, study and spectra of the electrically charged products or precursors of a m/z selected ion or ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002420 ; owl:annotatedTarget "URI that allows access to a PASSEL experiment."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002421 ; owl:annotatedTarget "Search engine input parameters specific to Paragon."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002422 ; owl:annotatedTarget "The Paragon method setting indicating the type of sample at the high level, generally meaning the type of quantitation labelling or lack thereof. 'Identification' is indicated for samples without any labels for quantitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002423 ; owl:annotatedTarget "The Paragon method setting indicating the actual cysteine alkylation agent; 'None' is indicated if there was no cysteine alkylation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002424 ; owl:annotatedTarget "The Paragon method setting (translating to a large number of lower level settings) indicating the instrument used or a category of instrument."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002425 ; owl:annotatedTarget "The Paragon method setting that controls the two major modes of search effort of the Paragon algorithm: the Rapid mode uses a conventional database search, while the Thorough mode uses a hybrid search, starting with the same approach as the Rapid mode but then follows it with a separate tag-based approach enabling a more extensive search."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000270 ; owl:annotatedTarget "OBSOLETE Multiple stages of precursor ion m/z selection followed by product ion detection for successive progeny ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002426 ; owl:annotatedTarget "A Paragon method setting that allows the inclusion of large sets of features such as biological modification or substitutions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002427 ; owl:annotatedTarget "The Paragon method setting that controls whether FDR analysis is conducted."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002428 ; owl:annotatedTarget "The Paragon method setting that controls whether quantitation analysis is conducted."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002429 ; owl:annotatedTarget "The Paragon method setting that controls whether the 'Background Correction' analysis is conducted; this processing estimates a correction to the attenuation in extremity ratios that can occur in isobaric quantatitation workflows on complex samples."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002430 ; owl:annotatedTarget "The Paragon method setting that controls whether 'Bias Correction' is invoked in quantitation analysis; this correction is a normalization to set the central tendency of protein ratios to unity."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000271 ; owl:annotatedTarget "Chemical ionization that results in the formation of negative ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002431 ; owl:annotatedTarget "The Paragon method setting that controls which label channel is used as the denominator in calculating relative expression ratios."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002432 ; owl:annotatedTarget "Search engine specific metadata that are not user-controlled settings."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002433 ; owl:annotatedTarget "This metric detects if any changes have been made to the originally installed key control files for the software; if no changes have been made, then the software version and settings are sufficient to enable exact reproduction; if changes have been made, then the modified ParameterTranslation- and ProteinPilot DataDictionary-XML files much also be provided in order to exactly reproduce a result."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002434 ; owl:annotatedTarget "Number of spectra in a search."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002435 ; owl:annotatedTarget "The time that a data processing action was started."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000272 ; owl:annotatedTarget "With this technique, m/z selected ions form neutrals by charge transfer to a collision gas or by dissociation. The neutrals are separated from the remaining ions and ionized in collisions with a second gas. This method is used to investigate reaction intermediates and other unstable species."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002436 ; owl:annotatedTarget "The Paragon method setting indicating the actual digestion agent - unlike other search tools, this setting does not include options that control partial specificity like 'semitrypsin'; if trypsin is used, trypsin is set, and partially conforming peptides are found in the Thorough mode of search; 'None' should be indicated only if there was really no digestion done."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002437 ; owl:annotatedTarget "The number of decoy sequences, if the concatenated target-decoy approach is used."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002438 ; owl:annotatedTarget "Information about the list of PSMs (SpectrumIdentificationList)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002439 ; owl:annotatedTarget "A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is the final set of identifications to be interpreted by consuming software. Amongst the set of SpectrumIdentificationList(s) that are flagged with the term, each spectrum must not be referenced from more than one SpectrumIdentificationResult."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002440 ; owl:annotatedTarget "A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is not the final set of identifications to be interpreted by consuming software. This term should be used when results are provided from multiple search engines for the results from each search engine before they are combined to give consensus identifications. Amongst the set of SpectrumIdentificationList(s) that are flagged with the term, each spectrum may be referenced from more than one SpectrumIdentificationResult."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002441 ; owl:annotatedTarget "AIA Analytical Data Interchange file format for mass spectrometry data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002442 ; owl:annotatedTarget "The format of the chromatography file being used. This could be a instrument or vendor specific proprietary file format or a converted open file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002443 ; owl:annotatedTarget "AIA Analytical Data Interchange file format for chromatography data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000273 ; owl:annotatedTarget "The ionization of an atom or molecule by a photon, written M + h? ? M^+ + e. The term photon impact is not recommended."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002444 ; owl:annotatedTarget "The 6420 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002445 ; owl:annotatedTarget "The 6460 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. It is similar to the 6420 but adds Agilent Jet Stream (AJS) technology to increase sensitivity."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002446 ; owl:annotatedTarget "The 6490 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. It is similar to the 6420 but adds the Agilent iFunnel technology to increase sensitivity."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002447 ; owl:annotatedTarget "The Paragon method setting indicating a list of one or more 'special factors', which generally capture secondary effects (relative to other settings) as a set of probabilities of modification features that override the assumed levels. For example the 'gel-based ID' special factor causes an increase probability of oxidation on several resides because of the air exposure impact on a gel, in addition to other effects."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002448 ; owl:annotatedTarget "The PEAKS inChorus peptide score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002449 ; owl:annotatedTarget "The PEAKS inChorus protein score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002450 ; owl:annotatedTarget "Ion b-H3PO4: b ion with lost phosphoric acid."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000274 ; owl:annotatedTarget "A mass spectrometry technique in which the sample is heated to the point of decomposition and the gaseous decomposition products are introduced into the ion source."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002451 ; owl:annotatedTarget "Ion y-H3PO4: y ion with lost phosphoric acid."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string, "http://maltcms.sf.net"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002452 ; owl:annotatedTarget "The Maltcms Graphical User Interface."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002453 ; owl:annotatedTarget "No fixed modifications are included as a parameter for the search, and therefore they are not reported."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002454 ; owl:annotatedTarget "No variable modifications are included as a parameter for the search, and therefore they are not reported."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002455 ; owl:annotatedTarget "OBSOLETE Neutral loss of water."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002456 ; owl:annotatedTarget "OBSOLETE Neutral loss of ammonia."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002457 ; owl:annotatedTarget "OBSOLETE Neutral loss of phosphoric acid."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string, "http://peptide-shaker.googlecode.com"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002458 ; owl:annotatedTarget "PeptideShaker is a software for the interpretation of proteomics identification results."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002459 ; owl:annotatedTarget "MS Amanda csv output format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000275 ; owl:annotatedTarget "A transmission quadrupole to which an oscillating potential is applied so as to focus a beam of ions through a collision gas with no m/z separation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002460 ; owl:annotatedTarget "Estimation of the global false negative rate of protein groups."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002461 ; owl:annotatedTarget "Estimation of the global confidence of protein groups."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002462 ; owl:annotatedTarget "Estimation of the global false negative rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002463 ; owl:annotatedTarget "Estimation of the global confidence for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002464 ; owl:annotatedTarget "Estimation of the global false negative rate of peptide spectrum matches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002465 ; owl:annotatedTarget "Estimation of the global confidence of peptide spectrum matches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000276 ; owl:annotatedTarget "Multiphoton ionization in which the ionization cross section is significantly enhanced because the energy of the incident photons is resonant with an intermediate excited state of the neutral species."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002466 ; owl:annotatedTarget "The probability based PeptideShaker PSM score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002467 ; owl:annotatedTarget "The probability based PeptideShaker PSM confidence."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002468 ; owl:annotatedTarget "The probability based PeptideShaker peptide score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002469 ; owl:annotatedTarget "The probability based PeptideShaker peptide confidence."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000277 ; owl:annotatedTarget "OBSOLETE A mass spectrometer used to measure the composition and pressure of gasses in an evacuated chamber."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002470 ; owl:annotatedTarget "The probability based PeptideShaker protein group score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002471 ; owl:annotatedTarget "The probability based PeptideShaker protein group confidence."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002472 ; owl:annotatedTarget "A collision-induced dissociation process that occurs in a trap-type collision cell."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002473 ; owl:annotatedTarget "The description of the ion fragment series (including charges and neutral losses) that are considered by the search engine."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000278 ; owl:annotatedTarget "The formation of ionized species in the gas phase from analytes deposited on a particular surface substrate which is irradiated with a laser beam of which wavelength is absorbed by the surface. See also desorption/ionization on silicon and laser desorption/ionization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002474 ; owl:annotatedTarget "The sum of peptide-level scores for peptides mapped only to non-canonical gene models within the group."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002475 ; owl:annotatedTarget "The count of the number of peptide sequences mapped to non-canonical gene models only within the group."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002476 ; owl:annotatedTarget "Drift time of an ion or spectrum of ions as measured in an ion mobility mass spectrometer. This time might refer to the central value of a bin into which all ions within a narrow range of drift time have been aggregated."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002477 ; owl:annotatedTarget "Array of population mean ion mobility values from a drift time device, reported in seconds (or milliseconds), corresponding to a spectrum of individual peaks encoded with an m/z array."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000279 ; owl:annotatedTarget "Matrix-assisted laser desorption ionization in which the matrix is covalently linked to the target surface."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002478 ; owl:annotatedTarget "Array of mean charge values where the mean charge is calculated as a weighted mean of the charges of individual peaks that are aggregated into a processed spectrum."^^xsd:string . [] a owl:Axiom ; rdfs:label "32-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1002478 ; owl:annotatedTarget "binary-data-type:MS:1000521"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002479 ; owl:annotatedTarget "Regular expression."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string, "http://dx.doi.org/"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002480 ; owl:annotatedTarget """(10[.][0-9]{4,}(?:[.][0-9]+)*/(?:(?![\"&'<>])[^ \\r \\v\\f])+)."""^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002481 ; owl:annotatedTarget "A collision-induced dissociation process wherein the projectile ion has the translational energy higher than approximately 1000 eV."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002482 ; owl:annotatedTarget "Estimated statistical threshold."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002483 ; owl:annotatedTarget "Estimated statistical threshold at PSM-level."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002484 ; owl:annotatedTarget "Estimated statistical threshold at peptide-level."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002485 ; owl:annotatedTarget "Estimated statistical threshold at protein-level."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000280 ; owl:annotatedTarget "OBSOLETE The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002486 ; owl:annotatedTarget "Estimated statistical threshold at protein group-level."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002487 ; owl:annotatedTarget "Dataset identifier issued by the MassIVE repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002488 ; owl:annotatedTarget "URI that allows the access to one dataset in the MassIVE repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002489 ; owl:annotatedTarget "Details describing a special processing."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002490 ; owl:annotatedTarget "Peptide-level scoring performed."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002491 ; owl:annotatedTarget "Modification localization scoring performed."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002492 ; owl:annotatedTarget "Consensus multiple search engine approach performed."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000281 ; owl:annotatedTarget "A device in which m/z selected ions are entrained in an inert carrier gas and undergo ion-molecule reactions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002493 ; owl:annotatedTarget "Sample pre-fractionation performed."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002494 ; owl:annotatedTarget "Cross-linking search performed."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002495 ; owl:annotatedTarget "No special processing performed."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002496 ; owl:annotatedTarget "Group PSMs by distinct peptide sequence ignoring modifications."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002497 ; owl:annotatedTarget "Group PSMs by distinct peptide sequence with taking modifications into account."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002498 ; owl:annotatedTarget "Group PSMs by distinct peptide sequence with taking modifications and charge into account."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002499 ; owl:annotatedTarget "OBSOLETE Peptide level score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002500 ; owl:annotatedTarget "A Boolean attribute to determine whether the peptide has passed the threshold indicated in the file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002501 ; owl:annotatedTarget "Indicating that no PSM threshold was used."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000016 ; owl:annotatedTarget "The time that an analyzer started a scan, relative to the start of the MS run."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000282 ; owl:annotatedTarget "A technique associated with Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry to carry out ion/neutral reactions such as low-energy collision-induced dissociation. A radio-frequency electric field of slightly off-resonance to the cyclotron frequency of the reactant ion cyclically accelerates and decelerates the reactant ion that is confined in the Penning ion trap. The ion's orbit does not exceed the dimensions of ion trap while the ion undergoes an ion/neutral species process that produces a high average translational energy for an extended time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002502 ; owl:annotatedTarget "Indicating that no peptide-level threshold was used."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002503 ; owl:annotatedTarget "Flags a PSM that it is used for peptide-level scoring."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002504 ; owl:annotatedTarget "The order of modifications to be referenced elsewhere in the document."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002505 ; owl:annotatedTarget "([:digit:]+:[0|1]{1}.[:digit:]+[Ee]{0,1}[+-]{0,1}[:digit:]*:[:digit:]+[|]{1}[:digit:]+:(true|false){1})."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002506 ; owl:annotatedTarget "Modification position score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002507 ; owl:annotatedTarget "Mod position score: false localization rate."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002508 ; owl:annotatedTarget "Cross-linking attribute."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000283 ; owl:annotatedTarget "OBSOLETE Mass spectrometry using spark ionization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002509 ; owl:annotatedTarget "The Cross-linking donor, assigned according to the following rules: the export software SHOULD use the following rules to choose the cross-link donor as the: longer peptide, then higher peptide neutral mass, then alphabetical order."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002510 ; owl:annotatedTarget "Cross-linking acceptor, assigned according to the following rules: the export software SHOULD use the following rules to choose the cross-link donor as the: longer peptide, then higher peptide neutral mass, then alphabetical order."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002511 ; owl:annotatedTarget "Cross-linked spectrum identification item."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002512 ; owl:annotatedTarget "Cross-linking scoring value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002513 ; owl:annotatedTarget "The absolute abundance of protein in a cell."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000284 ; owl:annotatedTarget "A technique to create excitation waveforms for ions in FT-ICR mass spectrometer or Paul ion trap. An excitation waveform in the time-domain is generated by taking the inverse Fourier transform of an appropriate frequency-domain programmed excitation spectrum, in which the resonance frequencies of ions to be excited are included. This technique may be used for selection of precursor ions in MS2 experiments."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002514 ; owl:annotatedTarget "Absolute quantitation analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002515 ; owl:annotatedTarget "States whether an internal peptide reference is used or not in absolute quantitation analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002516 ; owl:annotatedTarget "States whether an internal protein reference is used or not in absolute quantitation analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002517 ; owl:annotatedTarget "The absolute abundance of the spiked in reference peptide or protein used for absolute quantitation analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002518 ; owl:annotatedTarget "The data type normalised abundance for protein groups produced by Progenesis LC-MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002519 ; owl:annotatedTarget "The data type raw abundance for protein groups produced by Progenesis LC-MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002520 ; owl:annotatedTarget "Peptide group identifier for peptide-level stats."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002521 ; owl:annotatedTarget "A technique in which mass spectra are acquired in a spatially resolved manner. This is typically achieved by scanning a laser or primary ion beam over a sample and acquiring a mass spectrum at each position."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002522 ; owl:annotatedTarget "Determine 1st static terminal post-translational modifications (PTMs)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002523 ; owl:annotatedTarget "Thermo Scientific Q Exactive."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002524 ; owl:annotatedTarget "Thermo Scientific PepFinder BioPharma analysis software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002525 ; owl:annotatedTarget "Thermo Scientific TSQ 8000 Evo MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002526 ; owl:annotatedTarget "Thermo Scientific Exactive Plus MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000285 ; owl:annotatedTarget "The sum of all the separate ion currents carried by the ions of different m/z contributing to a complete mass spectrum or in a specified m/z range of a mass spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002527 ; owl:annotatedTarget "Instrument specific scan properties that are associated with a value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002528 ; owl:annotatedTarget "Synchronous prefilter selection."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002529 ; owl:annotatedTarget "A data array of resolution values."^^xsd:string . [] a owl:Axiom ; rdfs:label "32-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1002529 ; owl:annotatedTarget "binary-data-type:MS:1000521"^^xsd:string . [] a owl:Axiom ; rdfs:label "64-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1002529 ; owl:annotatedTarget "binary-data-type:MS:1000523"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002530 ; owl:annotatedTarget "A data array of signal baseline values (the signal in the absence of analytes)."^^xsd:string . [] a owl:Axiom ; rdfs:label "32-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1002530 ; owl:annotatedTarget "binary-data-type:MS:1000521"^^xsd:string . [] a owl:Axiom ; rdfs:label "64-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1002530 ; owl:annotatedTarget "binary-data-type:MS:1000523"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002531 ; owl:annotatedTarget "SQLite-based file format created at Pacific Northwest National Lab. It stores an intermediate analysis of ion-mobility mass spectrometry data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002532 ; owl:annotatedTarget "Native format defined by frame=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger frameType=xsd:nonNegativeInteger."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000286 ; owl:annotatedTarget "Energy focusing in a time-of-flight mass spectrometer that is accomplished by introducing a time delay between the formation of the ions and the application of the accelerating voltage pulse."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002533 ; owl:annotatedTarget "SCIEX TripleTOF 6600, a quadrupole - quadrupole - time-of-flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002534 ; owl:annotatedTarget "The ProLuCID result 'XCorr'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002535 ; owl:annotatedTarget "The ProLuCID result 'DeltaCn'."^^xsd:string . [] oboInOwl:hasDbXref "PMID:23307401"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002536 ; owl:annotatedTarget "D-Score for PTM site location at the PSM-level."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000287 ; owl:annotatedTarget "OBSOLETE An instrument that separates ions by m/z in a field-free region after acceleration to a fixed kinetic energy."^^xsd:string . [] oboInOwl:hasDbXref "PMID:21057138"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002537 ; owl:annotatedTarget "MD-Score for PTM site location at the PSM-level."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002538 ; owl:annotatedTarget "Localization confidence metric for a post translational modification (PTM)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002539 ; owl:annotatedTarget "PeptideShaker quality criteria for the confidence of PTM localizations."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002540 ; owl:annotatedTarget "PeptideShaker quality criteria for the confidence of PSM's."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002541 ; owl:annotatedTarget "PeptideShaker quality criteria for the confidence of peptide identifications."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000288 ; owl:annotatedTarget "A device that uses an oscillating electric field and magnetic field to accelerate charged particles."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002542 ; owl:annotatedTarget "PeptideShaker quality criteria for the confidence of protein identifications."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002543 ; owl:annotatedTarget "Target/Decoy based FDR estimation for cross-linking peptide-identifications."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002544 ; owl:annotatedTarget "Search engine for cross-linked peptides."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002545 ; owl:annotatedTarget "The xi result 'Score'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string, "http://code.google.com/p/srm-mzquantml-convertor/"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002546 ; owl:annotatedTarget "A software package to convert Skyline report to mzQuantML."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1021/pr060161n"^^xsd:string, "PMID:16944946"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002547 ; owl:annotatedTarget "A normalized spectral abundance factor (NSAF)."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1021/ac9023999"^^xsd:string, "PMID:20166708"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002548 ; owl:annotatedTarget "A distributed normalized spectral abundance factor (dNSAF)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000289 ; owl:annotatedTarget "OBSOLETE A mass spectrometer that uses a magnetic sector for m/z focusing and an electric sector for energy focusing of an ion beam."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002549 ; owl:annotatedTarget "Statistic to convey the confidence of the localization of an amino acid modification on a peptide sequence."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002550 ; owl:annotatedTarget "phosphoRS score for PTM site location at the peptide-level."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002551 ; owl:annotatedTarget "A-score for PTM site location at the peptide-level."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002552 ; owl:annotatedTarget "H-Score for peptide phosphorylation site location at the peptide-level."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000290 ; owl:annotatedTarget "OBSOLETE A mass spectrometer that combines m/z analyzers of different types to perform tandem mass spectrometry."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002553 ; owl:annotatedTarget "D-Score for PTM site location at the peptide-level."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002554 ; owl:annotatedTarget "MD-Score for PTM site location at the peptide-level."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002555 ; owl:annotatedTarget "Threshold for PTM site location score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002556 ; owl:annotatedTarget "Threshold for Ascore PTM site location score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000017 ; owl:annotatedTarget "OBSOLETE Describes the type of mass analysis being performed. Two primary modes are: typical acquisition over a range of masses (Mass Scan), and Selected Ion Detection. The primary difference is that Selected Ion Detection produces a single value for the signal at the selected mass rather than producing a mass spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000291 ; owl:annotatedTarget "A two dimensional Paul ion trap in which ions are confined in the axial dimension by means of an electric field at the ends of the trap."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002557 ; owl:annotatedTarget "Threshold for D-score PTM site location score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002558 ; owl:annotatedTarget "Threshold for MD-score PTM site location score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002559 ; owl:annotatedTarget "Threshold for H-score PTM site location score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002560 ; owl:annotatedTarget "Threshold for DeBunker PTM site location score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002561 ; owl:annotatedTarget "Threshold for Mascot PTM site assignment confidence."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000292 ; owl:annotatedTarget "OBSOLETE An instrument that separates a beam of ions according to their mass-to-charge ratio in which the ions are directed onto a focal plane detector such as a photographic plate."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002562 ; owl:annotatedTarget "Threshold for MSQuant:PTM-score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002563 ; owl:annotatedTarget "Threshold for MaxQuant:PTM Score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002564 ; owl:annotatedTarget "Threshold for MaxQuant:P-site localization probability."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002565 ; owl:annotatedTarget "Threshold for MaxQuant:PTM Delta Score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002566 ; owl:annotatedTarget "Threshold for MaxQuant:Phospho (STY) Probabilities."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000293 ; owl:annotatedTarget "OBSOLETE An instrument that measures the mass-to-charge ratio and relative abundances of ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002567 ; owl:annotatedTarget "Threshold for phosphoRS score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002568 ; owl:annotatedTarget "Threshold for phosphoRS site probability."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002569 ; owl:annotatedTarget "Number of spectra processed at once in a ProteomeDiscoverer search."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002570 ; owl:annotatedTarget "A protein for which the matched peptide sequences are the same, or a subset of, the matched peptide sequences for two or more other proteins combined. These other proteins need not all be in the same group."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002571 ; owl:annotatedTarget "A protein for which the matched spectra are the same, or a subset of, the matched spectra for two or more other proteins combined. These other proteins need not all be in the same group."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002572 ; owl:annotatedTarget "Estimated statistical threshold used for protein detection."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000294 ; owl:annotatedTarget "A plot of the relative abundance of a beam or other collection of ions as a function of the mass-to-charge ratio (m/z)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002573 ; owl:annotatedTarget "Estimated statistical threshold used for spectrum identification."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002574 ; owl:annotatedTarget "A program in the TPP that calculates PSM, peptide, and protein-level abundances based on 2-channel isotope-labelled data such as ICAT, SILAC, etc."^^xsd:string . [] oboInOwl:hasDbXref "PMID:21761931"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002575 ; owl:annotatedTarget "Tide open-source sequence search program developed at the University of Washington."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002576 ; owl:annotatedTarget "Andromeda result file output format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002577 ; owl:annotatedTarget "SCIEX 2000 QTRAP."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002578 ; owl:annotatedTarget "SCIEX 2500 QTRAP."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002579 ; owl:annotatedTarget "SCIEX 3500 QTRAP."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002580 ; owl:annotatedTarget "SCIEX QTRAP 4500."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002581 ; owl:annotatedTarget "SCIEX QTRAP 6500."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002582 ; owl:annotatedTarget "SCIEX QTRAP 6500+."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000295 ; owl:annotatedTarget "OBSOLETE An arrangement for a double-focusing mass spectrometer in which a deflection of ?/(4 ?(2)) radians in a radial electric field is followed by a magnetic deflection of ?/2 radians."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002583 ; owl:annotatedTarget "SCIEX TripleTOF 4600 time-of-flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002584 ; owl:annotatedTarget "SCIEX TripleTOF 5600+ time-of-flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002585 ; owl:annotatedTarget "Applied Biosystems/MDS SCIEX API 100 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002586 ; owl:annotatedTarget "Applied Biosystems/MDS SCIEX API 100LC MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002587 ; owl:annotatedTarget "Applied Biosystems/MDS SCIEX API 165 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002588 ; owl:annotatedTarget "Applied Biosystems/MDS SCIEX API 300 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002589 ; owl:annotatedTarget "Applied Biosystems/MDS SCIEX API 350 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002590 ; owl:annotatedTarget "Applied Biosystems/MDS SCIEX API 365 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002591 ; owl:annotatedTarget "SCIEX Triple Quad 3500."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002592 ; owl:annotatedTarget "SCIEX Triple Quad 4500."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000296 ; owl:annotatedTarget "OBSOLETE An arrangement for a double-focusing mass spectrometer in which a deflection of ?/2 radians in a radial electric field analyzer is followed by a magnetic deflection of ?/3 radians."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002593 ; owl:annotatedTarget "SCIEX Triple Quad 5500."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002594 ; owl:annotatedTarget "SCIEX Triple Quad 6500."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002595 ; owl:annotatedTarget "SCIEX Triple Quad 6500+."^^xsd:string . [] oboInOwl:hasDbXref "PMID:26171723"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002596 ; owl:annotatedTarget "The SEQUEST-like sequence search engine ProLuCID, developed in the Yates Lab at the Scripps Research Institute."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1002/rcm.1603"^^xsd:string, "PMID:15317041"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002597 ; owl:annotatedTarget "MS1 file format for MS1 spectral data."^^xsd:string . [] oboInOwl:hasDbXref "PMID:12643522"^^xsd:string, "http://fields.scripps.edu/DTASelect/"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002598 ; owl:annotatedTarget "Analysis software designed to reassemble the SEQUEST peptide identifications and to highlight the most significant matches."^^xsd:string . [] oboInOwl:hasDbXref "PMID:27824832"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002599 ; owl:annotatedTarget "Spectral Hash key, an unique identifier for spectra."^^xsd:string . [] oboInOwl:hasDbXref "http://ftp.pride.ebi.ac.uk/pride/resources/schema/pride/pride.xsd"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002600 ; owl:annotatedTarget "Internal data and submission format of the PRIDE database."^^xsd:string . [] oboInOwl:hasDbXref "PMID:24980485"^^xsd:string, "http://www.psidev.info/mztab/"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002601 ; owl:annotatedTarget "Tabular result format for proteomics and metabolomics experiments."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000297 ; owl:annotatedTarget "OBSOLETE A device that permits the trapping of ions by means of an alternating current voltage. The ejection of ions with a m/z less than a prescribed value and retention of those with higher mass depends on the application of radio frequency voltages between a ring electrode and two end-cap electrodes to confine the ions in a circular path. The choice of these voltages determines the m/z below which ions are ejected."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002602 ; owl:annotatedTarget "Reagent used in labeled quantification methods."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002603 ; owl:annotatedTarget "Isotope coded affinity tag reagent."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002604 ; owl:annotatedTarget "The name of the sample labelled with the heavy ICAT label."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002605 ; owl:annotatedTarget "The name of the sample labelled with the light ICAT label."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002606 ; owl:annotatedTarget "Isotope coded protein labeling reagent."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002607 ; owl:annotatedTarget "The name of the sample labelled with the ICPL reagent 0."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002608 ; owl:annotatedTarget "The name of the sample labelled with the ICPL reagent 4."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002609 ; owl:annotatedTarget "The name of the sample labelled with the ICPL reagent 6."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002610 ; owl:annotatedTarget "The name of the sample labelled with the ICPL reagent 10."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002611 ; owl:annotatedTarget "Stable isotope labeling with amino acids in cell culture reagent."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000298 ; owl:annotatedTarget "OBSOLETE A mass spectrometer in which the ions of different m/z are separated by means of crossed electric and magnetic fields in such a way that the selected ions follow a prolate trochoidal path."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002612 ; owl:annotatedTarget "The name of the sample labelled with the heavy SILAC label."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002613 ; owl:annotatedTarget "The name of the sample labelled with the medium SILAC label."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002614 ; owl:annotatedTarget "The name of the sample labelled with the light SILAC label."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002615 ; owl:annotatedTarget "Tandem mass tag reagent used in TMT, glycoTMT, iodoTMT, aminoxyTMT or hydrazideTMT isobaric labeling."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002616 ; owl:annotatedTarget "The name of the sample labelled with the TMT reagent 126."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002617 ; owl:annotatedTarget "The name of the sample labelled with the TMT reagent 127."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002618 ; owl:annotatedTarget "The name of the sample labelled with the TMT reagent 128."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002619 ; owl:annotatedTarget "The name of the sample labelled with the TMT reagent 129."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002620 ; owl:annotatedTarget "The name of the sample labelled with the TMT reagent 130."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002621 ; owl:annotatedTarget "The name of the sample labelled with the TMT reagent 131."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000299 ; owl:annotatedTarget "OBSOLETE An abbreviation of quadrupole ion storage trap. This term is synonymous with Paul Ion Trap. If so then add a synonym to paul and obsolete this term."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002622 ; owl:annotatedTarget "Isobaric tag for relative and absolute quantitation (iTRAQ or iTRAQH) reagent."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002623 ; owl:annotatedTarget "The name of the sample labelled with the iTRAQ reagent 113."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002624 ; owl:annotatedTarget "The name of the sample labelled with the iTRAQ reagent 114."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002625 ; owl:annotatedTarget "The name of the sample labelled with the iTRAQ reagent 115."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002626 ; owl:annotatedTarget "The name of the sample labelled with the iTRAQ reagent 116."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002627 ; owl:annotatedTarget "The name of the sample labelled with the iTRAQ reagent 117."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002628 ; owl:annotatedTarget "The name of the sample labelled with the iTRAQ reagent 118."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002629 ; owl:annotatedTarget "The name of the sample labelled with the iTRAQ reagent 119."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002630 ; owl:annotatedTarget "The name of the sample labelled with the iTRAQ reagent 121."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002631 ; owl:annotatedTarget "Dissociation process combining electron-transfer dissociation and higher-energy collision dissociation. It combines ETD (reaction time) followed by HCD (activation energy)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000300 ; owl:annotatedTarget "A time-of-flight mass spectrometer that uses a static electric field to reverse the direction of travel of the ions entering it. A reflectron improves mass resolution by assuring that ions of the same m/z but different kinetic energy arrive at the detector at the same time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002632 ; owl:annotatedTarget "Dataset identifier issued by the jPOST repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002633 ; owl:annotatedTarget "URI that allows the access to one dataset in the jPOST repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002634 ; owl:annotatedTarget "Thermo Scientific Q Exactive Plus."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002635 ; owl:annotatedTarget "Proteogenomics search performed."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002636 ; owl:annotatedTarget "Proteogenomics attribute."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002637 ; owl:annotatedTarget "The name or number of the chromosome to which a given peptide has been mapped."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000301 ; owl:annotatedTarget "OBSOLETE A mass spectrometer consisting of one or more magnetic sectors for m/z selection in a beam of ions. Such instruments may also have one or more electric sectors for energy selection."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002638 ; owl:annotatedTarget "The strand (+ or -) to which the peptide has been mapped."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002639 ; owl:annotatedTarget "OBSOLETE The overall start position on the chromosome to which a peptide has been mapped i.e. the position of the first base of the first codon, using a zero-based counting system."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002640 ; owl:annotatedTarget "The overall end position on the chromosome to which a peptide has been mapped i.e. the position of the third base of the last codon, using a zero-based counting system."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002641 ; owl:annotatedTarget "The number of exons to which the peptide has been mapped."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002642 ; owl:annotatedTarget "A comma separated list of the number of DNA bases within each exon to which a peptide has been mapped. Assuming standard operation of a search engine, the peptide exon sizes should sum to exactly three times the peptide length."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000302 ; owl:annotatedTarget "OBSOLETE A mass spectrometer designed for mass spectrometry/mass spectrometry."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002643 ; owl:annotatedTarget "A comma separated list of start positions within exons to which the peptide has been mapped, relative to peptide-chromosome start, assuming a zero-based counting system. The first value MUST match the value in peptide start on chromosome."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002644 ; owl:annotatedTarget "The reference genome and versioning string as used for mapping. All coordinates are within this frame of reference."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string, "http://msdk.github.io/"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002645 ; owl:annotatedTarget "Mass Spectrometry Development Kit (MSDK) is a Java library of algorithms for processing of mass spectrometry data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002646 ; owl:annotatedTarget "Describes how the native spectrum identifiers that have been combined prior to searching or interpretation are formated."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002647 ; owl:annotatedTarget "Thermo comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002648 ; owl:annotatedTarget "Waters comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000303 ; owl:annotatedTarget "OBSOLETE A mass spectrometer that consists of four parallel rods whose centers form the corners of a square and whose opposing poles are connected. The voltage applied to the rods is a superposition of a static potential and a sinusoidal radio frequency potential. The motion of an ion in the x and y dimensions is described by the Matthieu equation whose solutions show that ions in a particular m/z range can be transmitted along the z axis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002649 ; owl:annotatedTarget "WIFF comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002650 ; owl:annotatedTarget "Bruker/Agilent comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002651 ; owl:annotatedTarget "Bruker BAF comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002652 ; owl:annotatedTarget "Bruker FID comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002653 ; owl:annotatedTarget "Comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002654 ; owl:annotatedTarget "Comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002655 ; owl:annotatedTarget "Comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002656 ; owl:annotatedTarget "Comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002657 ; owl:annotatedTarget "Comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002658 ; owl:annotatedTarget "Identification parameter for the search engine run."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002659 ; owl:annotatedTarget "Text-based format used by UniProtKB for sequence entries."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002660 ; owl:annotatedTarget "XML-based format used by UniProtKB for sequence entries."^^xsd:string . [] oboInOwl:hasDbXref "PMID:23323968"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002661 ; owl:annotatedTarget "Morpheus search engine."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002662 ; owl:annotatedTarget "Morpheus score for PSMs."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002663 ; owl:annotatedTarget "Summed Morpheus score for protein groups."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000304 ; owl:annotatedTarget "The electrical potential used to impart kinetic energy to ions in a mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002664 ; owl:annotatedTarget "Parent term for interaction scores derived from cross-linking."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002665 ; owl:annotatedTarget "([:digit:]+[.][a|b]:([:digit:]+|null):[:digit:]+[.][:digit:]+([Ee][+-][0-9]+)*:(true|false]{1}))."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002666 ; owl:annotatedTarget "Bruker Daltonics' impact II."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002667 ; owl:annotatedTarget "Bruker Daltonics' impact HD."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002668 ; owl:annotatedTarget "Standard reporter ion for iTRAQ 4Plex. The value slot holds the integer mass of the iTRAQ 4Plex reporter ion, e.g. 114."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002669 ; owl:annotatedTarget "Standard reporter ion for iTRAQ 8Plex. The value slot holds the integer mass of the iTRAQ 8Plex reporter ion, e.g. 113."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000305 ; owl:annotatedTarget "OBSOLETE The circular motion of a charged particle moving at velocity v in a magnetic field B that results from the force qvB."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002670 ; owl:annotatedTarget "Standard reporter ion for TMT. The value slot holds the integer mass of the TMT reporter ion and can be suffixed with either N or C, indicating whether the mass difference is encoded at a Nitrogen or Carbon atom, e.g. 127N."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002671 ; owl:annotatedTarget "Standard reporter ion for TMT with ETD fragmentation. The value slot holds the integer mass of the TMT ETD reporter ion and can be suffixed with either N or C, indicating whether the mass difference is encoded at a Nitrogen or Carbon atom, e.g. 127C."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002672 ; owl:annotatedTarget "No statistical threshold for accepting or rejecting that a modification position."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002673 ; owl:annotatedTarget "Cross-Linking MS search engine."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002674 ; owl:annotatedTarget "SCIEX X500R QTOF, a quadrupole - quadrupole - time-of-flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002675 ; owl:annotatedTarget "This subsection describes terms which can describe details of cross-linking results."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000306 ; owl:annotatedTarget "OBSOLETE A mass spectrometer in which m/z separation using one or more electric fields that vary with time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002676 ; owl:annotatedTarget "Estimation of the global false discovery rate of proteins-pairs in cross-linking experiments."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002677 ; owl:annotatedTarget "Estimation of the global false discovery rate of residue-pairs in cross-linking experiments."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002678 ; owl:annotatedTarget "A supplemental collision-induced dissociation process that occurs in a beam-type collision cell in addition to another primary type of dissociation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002679 ; owl:annotatedTarget "The dissociation of an ion after supplemental collisional excitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000307 ; owl:annotatedTarget "Three element charged particle lens in which the first and third elements are held at the same voltage. Such a lens produces focusing without changing the translational energy of the particle."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002680 ; owl:annotatedTarget "Energy for an ion experiencing supplemental collision with a stationary gas particle resulting in dissociation of the ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002681 ; owl:annotatedTarget "OpenXQuest's combined score for a cross-link spectrum match."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002682 ; owl:annotatedTarget "OpenXQuest's cross-correlation of cross-linked ions subscore."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002683 ; owl:annotatedTarget "OpenXQuest's cross-correlation of unlinked ions subscore."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002684 ; owl:annotatedTarget "OpenXQuest's match-odds subscore."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002685 ; owl:annotatedTarget "OpenXQuest's sum of matched peak intensity subscore."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000018 ; owl:annotatedTarget "Direction in terms of m/z of the scan for scanning analyzers (low to high, or high to low)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002686 ; owl:annotatedTarget "OpenXQuest's weighted percent of total ion current subscore."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002687 ; owl:annotatedTarget "Attribute of an item in the result of mass spectrometry proteomics data analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002688 ; owl:annotatedTarget "Statistic derived from a post-translational modification localization analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002689 ; owl:annotatedTarget "Statistic for a single item derived from a post-translational modification localization analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002690 ; owl:annotatedTarget "Statistic for all items derived from a post-translational modification localization analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002691 ; owl:annotatedTarget "Global false localization rate for all localizations in a dataset."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002692 ; owl:annotatedTarget "Local false localization rate for the bottom item in list of localizations sorted from most to least confident."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002693 ; owl:annotatedTarget "Attribute of an identification item in the result of mass spectrometry proteomics data analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002694 ; owl:annotatedTarget "Attribute of a single identification item (as opposed to a list) in the result of mass spectrometry proteomics data analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000308 ; owl:annotatedTarget "The magnitude of the force per unit charge at a given point in space."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002695 ; owl:annotatedTarget "Fragment ion corresponding to an isobaric label artifact."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002697 ; owl:annotatedTarget "Fragment ion is an isotopic peak other than that monoisotopic peak. This is used in conjuction with another ion type, such as frag: y ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002698 ; owl:annotatedTarget "An attribute of the protein cluster concept as used in mzIdentML."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002699 ; owl:annotatedTarget "General property of an entire result list."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002700 ; owl:annotatedTarget "General property of the list of all PSMs."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002701 ; owl:annotatedTarget "Statistic pertaining to the full list of all PSMs."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002702 ; owl:annotatedTarget "General property of all peptide sequences in the list."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002703 ; owl:annotatedTarget "Statistic pertaining to all peptide sequences in the list."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002704 ; owl:annotatedTarget "Attribute of an entire protein list."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002705 ; owl:annotatedTarget "A statistical metric of an entire protein list."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000309 ; owl:annotatedTarget "The region of a Mathieu stability diagram closest to the origin. Ions within this region can traverse the full length of a transmission quadrupole."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002706 ; owl:annotatedTarget "Attrbiute of an entire list of protein groups."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002707 ; owl:annotatedTarget "Regular expression for LysargiNase."^^xsd:string . [] oboInOwl:hasDbXref "PMID:25419962"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002708 ; owl:annotatedTarget "Metalloproteinase found in Methanosarcina acetivorans that cleaves on the N-terminal side of lysine and arginine residues."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002719 ; owl:annotatedTarget "LECO bench-top GC time-of-flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002720 ; owl:annotatedTarget "PNNL top-down/bottom-up analysis software for identifying peptides and proteoforms in fragmentation mass spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000310 ; owl:annotatedTarget "The electric or magnetic field that extends from the edge of a sector, lens or other ion optics element."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002721 ; owl:annotatedTarget "MSPathFinder spectral E-value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002722 ; owl:annotatedTarget "MSPathFinder E-value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002723 ; owl:annotatedTarget "MSPathFinder Q-value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002724 ; owl:annotatedTarget "MSPathFinder peptide-level Q-value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000311 ; owl:annotatedTarget "A device for measuring the kinetic energy of charged particles using a retarding field, time-of-flight, or the extent of deflection in an electric or magnetic field."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002725 ; owl:annotatedTarget "MSPathFinder raw score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002726 ; owl:annotatedTarget "Waters Corporation SYNAPT G2-Si orthogonal acceleration time-of-flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002727 ; owl:annotatedTarget "Waters Corporation MALDI SYNAPT G2-Si orthogonal acceleration time-of-flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002728 ; owl:annotatedTarget "Waters Corporation Vion IMS QTof orthogonal acceleration time-of-flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002729 ; owl:annotatedTarget "Waters Corporation Xevo G2 XS Tof orthogonal acceleration time-of-flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002730 ; owl:annotatedTarget "Waters Corporation Xevo TQ-XS triple quadrupole mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002731 ; owl:annotatedTarget "Waters Corporation Xevo TQ-S micro triple quadrupole mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002732 ; owl:annotatedTarget "Thermo Scientific Orbitrap Fusion Lumos mass spectrometer with Tribrid architecture consisting of quadrupole mass filter, linear ion trap and Orbitrap mass analyzers."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002733 ; owl:annotatedTarget "The number of MS2 spectra identified for a peptide sequence specified by the amino acid one-letter codes plus optional PTMs in spectral counting."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000312 ; owl:annotatedTarget "OBSOLETE The m/z value above which ions cannot be detected in a mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002734 ; owl:annotatedTarget "The number of MS2 spectra identified for a molecular ion defined by the peptide sequence represented by the amino acid one-letter codes, plus optional PTMs plus optional charged aducts plus the charge state, in spectral counting."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002735 ; owl:annotatedTarget "The data type of the value reported in a QuantLayer for a feature."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002736 ; owl:annotatedTarget "The data type of the value reported in a QuantLayer for a PSM."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002737 ; owl:annotatedTarget "The data type of the value reported in a QuantLayer for a peptide."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002738 ; owl:annotatedTarget "The data type of the value reported in a QuantLayer for a protein."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002739 ; owl:annotatedTarget "The data type of the value reported in a QuantLayer for a protein group."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002740 ; owl:annotatedTarget "Within the context of a proteogenomics approach, a peptide sequence that has not been mapped to a genomic location."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002741 ; owl:annotatedTarget "Within the context of a proteogenomics approach, a protein sequence that has not been mapped to a genomic location."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002742 ; owl:annotatedTarget "A data array of noise values."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000313 ; owl:annotatedTarget "OBSOLETE The limit of m/z over which a mass spectrometer can detect ions."^^xsd:string . [] a owl:Axiom ; rdfs:label "32-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1002742 ; owl:annotatedTarget "binary-data-type:MS:1000521"^^xsd:string . [] a owl:Axiom ; rdfs:label "64-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1002742 ; owl:annotatedTarget "binary-data-type:MS:1000523"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002743 ; owl:annotatedTarget "A data array of parallel, independent m/z values for a sampling of noise across a spectrum (typically much smaller than MS:1000514, the m/z array)."^^xsd:string . [] a owl:Axiom ; rdfs:label "32-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1002743 ; owl:annotatedTarget "binary-data-type:MS:1000521"^^xsd:string . [] a owl:Axiom ; rdfs:label "64-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1002743 ; owl:annotatedTarget "binary-data-type:MS:1000523"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002744 ; owl:annotatedTarget "A data array of intensity values for the amplitude of noise variation superposed on the baseline (MS:1002745) across a spectrum (for use with MS:1002743, sampled noise m/z array)."^^xsd:string . [] a owl:Axiom ; rdfs:label "32-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1002744 ; owl:annotatedTarget "binary-data-type:MS:1000521"^^xsd:string . [] a owl:Axiom ; rdfs:label "64-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1002744 ; owl:annotatedTarget "binary-data-type:MS:1000523"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000314 ; owl:annotatedTarget "OBSOLETE The use of mass selective instability to eject ions of selected m/z values from an ion trap."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002745 ; owl:annotatedTarget "A data array of baseline intensity values (the intensity in the absence of analytes) for a sampling of noise across a spectrum (for use with MS:1002743, sampled noise m/z array)."^^xsd:string . [] a owl:Axiom ; rdfs:label "32-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1002745 ; owl:annotatedTarget "binary-data-type:MS:1000521"^^xsd:string . [] a owl:Axiom ; rdfs:label "64-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1002745 ; owl:annotatedTarget "binary-data-type:MS:1000523"^^xsd:string . [] oboInOwl:hasDbXref "https://github.com/ms-numpress/ms-numpress"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002746 ; owl:annotatedTarget "Compression using MS-Numpress linear prediction compression and zlib."^^xsd:string . [] oboInOwl:hasDbXref "https://github.com/ms-numpress/ms-numpress"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002747 ; owl:annotatedTarget "Compression using MS-Numpress positive integer compression and zlib."^^xsd:string . [] oboInOwl:hasDbXref "https://github.com/ms-numpress/ms-numpress"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002748 ; owl:annotatedTarget "Compression using MS-Numpress short logged float compression and zlib."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002749 ; owl:annotatedTarget "Means that Mascot has integrated the search results of database and spectral library search into a single data set."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002750 ; owl:annotatedTarget "Search tool of the NIST (National Institute of Standards and Technology) for spectral library searches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002751 ; owl:annotatedTarget "MSP text format defined by the NIST."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000315 ; owl:annotatedTarget "OBSOLETE A method for selective ejection of ions according to their m/z value in an ion trap."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002752 ; owl:annotatedTarget "Database containing spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002753 ; owl:annotatedTarget "Value range for scores."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002754 ; owl:annotatedTarget "MSPepSearch score (0 for entirely dissimilar and 1000 for identical observed spectrum and library spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002755 ; owl:annotatedTarget "A combined MS2 (with fragment ions) and spectral library search."^^xsd:string . [] oboInOwl:hasDbXref "PMID:24926564"^^xsd:string, "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002756 ; owl:annotatedTarget "Quantitation analysis using the Thermo Fisher sulfhydryl-reactive iodo tandem mass tag (iodoTMT) labelling workflow."^^xsd:string . [] oboInOwl:hasDbXref "PMID:22455665"^^xsd:string, "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002757 ; owl:annotatedTarget "Quantitation analysis using the Thermo Fisher carbonyl-reactive glyco-tandem mass tag (glyco-TMT) labelling workflow."^^xsd:string . [] oboInOwl:hasDbXref "PMID:25337643"^^xsd:string, "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002758 ; owl:annotatedTarget "Quantitation analysis using the Thermo Fisher carbonyl-reactive aminoxy tandem mass tag (aminoxyTMT) labelling workflow."^^xsd:string . [] oboInOwl:hasDbXref "PMID:25337643"^^xsd:string, "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002759 ; owl:annotatedTarget "Quantitation analysis using the Thermo Fisher carbonyl-reactive hydrazide tandem mass tag (hydrazide-TMT) labelling workflow."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000316 ; owl:annotatedTarget "OBSOLETE A graphical representation expressed in terms of reduced coordinates that describes charged particle motion in a quadrupole mass filter or quadrupole ion trap mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PMID:22926130"^^xsd:string, "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002760 ; owl:annotatedTarget "Quantification analysis using the carbonyl-reactive isobaric tags for relative and absolute quantification hydrazide (iTRAQH) labelling workflow."^^xsd:string . [] oboInOwl:hasDbXref "PMID:20715779"^^xsd:string, "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002761 ; owl:annotatedTarget "Quantification analysis using the amine-reactive deuterium isobaric amine reactive tag (DiART) labelling workflow."^^xsd:string . [] oboInOwl:hasDbXref "PMID:20715779"^^xsd:string, "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002762 ; owl:annotatedTarget "Quantification analysis using the amine-reactive dimethyl leucine (DiLeu) tag labelling workflow."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002763 ; owl:annotatedTarget "The name of the sample labelled with the TMT reagent 127N."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002764 ; owl:annotatedTarget "The name of the sample labelled with the TMT reagent 127C."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002765 ; owl:annotatedTarget "The name of the sample labelled with the TMT reagent 128N."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002766 ; owl:annotatedTarget "The name of the sample labelled with the TMT reagent 128C."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002767 ; owl:annotatedTarget "The name of the sample labelled with the TMT reagent 129N."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002768 ; owl:annotatedTarget "The name of the sample labelled with the TMT reagent 129C."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002769 ; owl:annotatedTarget "The name of the sample labelled with the TMT reagent 130N."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000317 ; owl:annotatedTarget "OBSOLETE The pulsed acceleration of ions perpendicular to their direction of travel into a time-of-flight mass spectrometer. Ions may be extracted from a directional ion source, drift tube or m/z separation stage."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002770 ; owl:annotatedTarget "The name of the sample labelled with the TMT reagent 130C."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002771 ; owl:annotatedTarget "Deuterium isobaric amine reactive tag labeling reagent."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002772 ; owl:annotatedTarget "The name of the sample labelled with the DiART reagent 114."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002773 ; owl:annotatedTarget "The name of the sample labelled with the DiART reagent 115."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002774 ; owl:annotatedTarget "The name of the sample labelled with the DiART reagent 116."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002775 ; owl:annotatedTarget "The name of the sample labelled with the DiART reagent 117."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002776 ; owl:annotatedTarget "The name of the sample labelled with the DiART reagent 118."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002777 ; owl:annotatedTarget "The name of the sample labelled with the DiART reagent 119."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002778 ; owl:annotatedTarget "Dimethyl leucine labeling reagent."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002779 ; owl:annotatedTarget "The name of the sample labelled with the DiLeu reagent 115."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000318 ; owl:annotatedTarget "OBSOLETE A mode of ion ejection in a quadrupole ion trap that relies on a auxiliary radio frequency voltage that is applied to the end-cap electrodes. The voltage is tuned to the secular frequency of a particular ion to eject it."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002780 ; owl:annotatedTarget "The name of the sample labelled with the DiLeu reagent 116."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002781 ; owl:annotatedTarget "The name of the sample labelled with the DiLeu reagent 117."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002782 ; owl:annotatedTarget "The name of the sample labelled with the DiLeu reagent 118."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002783 ; owl:annotatedTarget "The 6550 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002784 ; owl:annotatedTarget "The 6550A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002785 ; owl:annotatedTarget "The 6520B Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002786 ; owl:annotatedTarget "The 6530A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002787 ; owl:annotatedTarget "The 6530B Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002788 ; owl:annotatedTarget "The 6538 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002789 ; owl:annotatedTarget "The 6540 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000319 ; owl:annotatedTarget "The mutual repulsion of particles of like charge that limits the current in a charged-particle beam and causes beams or packets of charged particles to expand radially over time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002790 ; owl:annotatedTarget "The 6542 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002791 ; owl:annotatedTarget "The 6545 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002792 ; owl:annotatedTarget "The 6560 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002793 ; owl:annotatedTarget "The 6570 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002794 ; owl:annotatedTarget "The 6120B Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002795 ; owl:annotatedTarget "The 6150 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002796 ; owl:annotatedTarget "The 6224 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002797 ; owl:annotatedTarget "The 6230A Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002798 ; owl:annotatedTarget "The 6230B Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002799 ; owl:annotatedTarget "The 6430 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000320 ; owl:annotatedTarget "An electric or magnetic field that does not change in time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002800 ; owl:annotatedTarget "The 6495A Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002801 ; owl:annotatedTarget "The 6495B Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002802 ; owl:annotatedTarget "The 7000A Quadrupole GC/MS system is a Agilent gas chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002803 ; owl:annotatedTarget "The 7000B Quadrupole GC/MS system is a Agilent gas chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002804 ; owl:annotatedTarget "The 7800 Quadrupole ICP-MS system is a Agilent inductively couple plasma instrument combined with a Agilent quadrupole mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002805 ; owl:annotatedTarget "The 8800 Quadrupole ICP-MS system is a Agilent inductively couple plasma instrument combined with a Agilent quadrupole mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002806 ; owl:annotatedTarget "Molecular entity having a net positive or negative electric charge."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002807 ; owl:annotatedTarget "Adduct ion with positive ionization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002808 ; owl:annotatedTarget "Adduct ion with negative ionization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000321 ; owl:annotatedTarget "OBSOLETE A mass spectrum obtained by setting the electric sector field E to twice the value required to transmit the main ion-beam thereby allowing ions with a kinetic energy-to-charge ratio twice that of the main ion-beam to be transmitted. Product ions resulting from partial charge transfer reactions such as m^2+ + N ? m^+ + N^+ that occur in a collision cell (containing a gas, N) located in a field-free region preceding a magnetic and electric sector combination are detected. When the magnetic sector field B is scanned, a mass spectrum of singly charged product ions of doubly charged precursor ions is obtained."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002809 ; owl:annotatedTarget "Nonphysical characteristic attributed to an adduct ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002810 ; owl:annotatedTarget "Theoretical m/z of the X component in the adduct (addition product) M+X or M-X. This term was formerly called 'adduct ion mass', but it is not really a mass. It corresponds to the column mislabelled as 'mass' at https://fiehnlab.ucdavis.edu/staff/kind/Metabolomics/MS-Adduct-Calculator."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002811 ; owl:annotatedTarget "Isotope of the matrix molecule M of an adduct formation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002812 ; owl:annotatedTarget "([[:digit:]{0,1}M([+][:digit:]{0,1}(H|K|(Na)|(Li)|(Cl)|(Br)|(NH3)|(NH4)|(CH3OH)|(IsoProp)|(DMSO)|(FA)|(Hac)|(TFA)|(NaCOOH)|(HCOOH)|(CF3COOH)|(ACN))){0,}([-][:digit:]{0,1}(H|(H2O)|(CH2)|(CH4)|(NH3)|(CO)|(CO2)|(COCH2)|(HCOOH)|(C2H4)|(C4H8)|(C3H2O3)|(C5H8O4)|(C6H10O4)|(C6H10O5)|(C6H8O6))){0,}][:digit:]{0,1}[+-])."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002813 ; owl:annotatedTarget "Adduct formation formula of the form M+X or M-X, as constrained by the provided regular expression."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000322 ; owl:annotatedTarget "The measurement of the relative abundance of ions that result from a charge inversion reaction as a function of m/z."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002814 ; owl:annotatedTarget "An electrical mobility unit that equals the speed [cm/s] an ion reaches when pulled through a gas by a Voltage[V] over a certain distance [cm]."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002815 ; owl:annotatedTarget "Ion mobility measurement for an ion or spectrum of ions as measured in an ion mobility mass spectrometer. This might refer to the central value of a bin into which all ions within a narrow range of mobilities have been aggregated."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002816 ; owl:annotatedTarget "Array of population mean ion mobility values (K or K0) based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, corresponding to a spectrum of individual peaks encoded with an m/z array."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002817 ; owl:annotatedTarget "Bruker TDF raw file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002818 ; owl:annotatedTarget "Native format defined by frame=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000323 ; owl:annotatedTarget "OBSOLETE Spectrum of all precursor ions that undergo a selected m/z decrement."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002819 ; owl:annotatedTarget "Bruker TDF comma separated list of spectra that have been combined prior to searching or interpretation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002820 ; owl:annotatedTarget "Adduct formed by protonation of a matrix molecule M, i.e. the addition of a matrix molecule M plus a proton."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002821 ; owl:annotatedTarget "Adduct formed by deprotonation of a matrix molecule M, i.e. the removal of a proton from a matrix molecule M."^^xsd:string . [] oboInOwl:hasDbXref "PMID:27575624"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002822 ; owl:annotatedTarget "File format developed by the OpenMS team."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002823 ; owl:annotatedTarget "OpenMS intermediate identification format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002824 ; owl:annotatedTarget "OpenMS feature file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002825 ; owl:annotatedTarget "OpenMS consensus map format."^^xsd:string . [] oboInOwl:hasDbXref "https://github.com/smith-chem-wisc/MetaMorpheus"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002826 ; owl:annotatedTarget "MetaMorpheus search engine."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000324 ; owl:annotatedTarget "OBSOLETE Spectrum of all precursor ions that undergo a selected m/z increment."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002827 ; owl:annotatedTarget "MetaMorpheus score for PSMs."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002828 ; owl:annotatedTarget "MetaMorpheus score for protein groups."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002829 ; owl:annotatedTarget "Feature intensity produced by XCMS findPeaks() from integrated peak intensity."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002830 ; owl:annotatedTarget "Feature intensity produced by XCMS findPeaks() from baseline corrected integrated peak intensity."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000325 ; owl:annotatedTarget "A spectrum formed of all product ions that have been produced by gain of a pre-selected neutral mass following the reaction with and addition of the gas in a collision cell."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002831 ; owl:annotatedTarget "Feature intensity produced by XCMS findPeaks() from maximum peak intensity."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002832 ; owl:annotatedTarget "Feature intensity produced by XCMS findPeaks() from feature area that is not normalized by the scan rate."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002833 ; owl:annotatedTarget "Polarities of the scans of a run are alternating, i.e. both positive and negative mode scans are acquired."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002834 ; owl:annotatedTarget "The Delta Score reported by Proteome Discoverer version 2."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002835 ; owl:annotatedTarget "Thermo Fisher Scientific LTQ Orbitrap Classic."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002836 ; owl:annotatedTarget "Dataset identifier issued by the iProX repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000326 ; owl:annotatedTarget "A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002837 ; owl:annotatedTarget "URI that allows the access to one dataset in the iProX repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string, "https://github.com/biospi/mzmlb"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002838 ; owl:annotatedTarget "mzMLb file format, mzML encapsulated within HDF5."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002839 ; owl:annotatedTarget "Conversion of a file format to Proteomics Standards Initiative mzMLb file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002840 ; owl:annotatedTarget "Data belonging to an external reference."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002841 ; owl:annotatedTarget "The HDF5 dataset location containing the binary data, relative to the dataset containing the mzML. Also indicates that there is no data in the section of the BinaryDataArray."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002842 ; owl:annotatedTarget "The position in the external data where the array begins."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000019 ; owl:annotatedTarget "Describes the function in control of the m/z scan (for scanning instruments). Commonly the scan function is linear, but in principle any function can be used."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000327 ; owl:annotatedTarget "OBSOLETE A type of MS2 experiments with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002843 ; owl:annotatedTarget "Describes how many fields an array contains."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002844 ; owl:annotatedTarget "Root node for terms relating to the description of an Experiment in relation to the PRIDE-XML element ExperimentCollection/Experiment/additional/cvParam."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002845 ; owl:annotatedTarget "URI of one external file associated to the PRIDE experiment (maybe through a PX submission)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002846 ; owl:annotatedTarget "URI of one raw data file associated to the PRIDE experiment (maybe through a PX submission)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002847 ; owl:annotatedTarget "URI associated to one PX submission in ProteomeCentral."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000328 ; owl:annotatedTarget "A mass spectrum obtained using a sector mass spectrometer in which the electric sector field E is set to half the value required to transmit the main ion-beam. This spectrum records the signal from doubly charged product ions of charge-stripping reactions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002848 ; owl:annotatedTarget "URI of one file labeled as 'Result', associated to one PX submission."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002849 ; owl:annotatedTarget "URI of one search engine output file associated to one PX submission."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002850 ; owl:annotatedTarget "URI of one of one search engine output file associated to one PX submission."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002851 ; owl:annotatedTarget "URI of one file labeled as 'Other', associated to one PX submission."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002852 ; owl:annotatedTarget "FTP location of one entire PX data set."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000329 ; owl:annotatedTarget "OBSOLETE A scan in an instrument with two or more m/z analysers or in a sector mass spectrometer that incorporates at least one magnetic sector and one electric sector. Two or more of the analyzers are scanned simultaneously so as to preserve a predetermined relationship between scan parameters to produce a product ion, precursor ion or constant neutral loss spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002853 ; owl:annotatedTarget "A dataset which does not have an associated published manuscript."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002854 ; owl:annotatedTarget "Dataset has been peer-reviewed somehow."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002855 ; owl:annotatedTarget "Dataset that has not been peer-reviewed by any means."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002856 ; owl:annotatedTarget "Dataset for which the identifications and/or spectra/traces are in formats that can be parsed by the hosting data repository such that internal references between identifications and spectra/traces are preserved and browsable at the repository. This is usually called a complete submission."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002857 ; owl:annotatedTarget "Dataset for which the identifications and/or spectra/traces are in formats that cannot be parsed by the hosting data repository and thus internal references between identifications and spectra/traces are not browsable at the repository. This is usually called a partial submission."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002858 ; owl:annotatedTarget "A dataset which has an associated manuscript pending for publication."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002859 ; owl:annotatedTarget "Additional URI of one raw data file associated to the PRIDE experiment (maybe through a PX submission). The URI is provided via an additional resource to PRIDE."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002860 ; owl:annotatedTarget "URI of one gel image file associated to one PX submission."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000330 ; owl:annotatedTarget "OBSOLETE A linked scan at constant B/E may be performed on a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector. The magnetic field B and the electric field E are scanned simultaneously while the accelerating voltage V is held constant, so as to maintain the ratio of the two fields constant. This linked scan may record a product ion spectrum of dissociation or other reactions occurring in a field free region preceding the two sectors."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002861 ; owl:annotatedTarget "All the raw files included in the original dataset (or group of original datasets) have been reanalysed."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002862 ; owl:annotatedTarget "A subset of the raw files included in the original dataset (or group of original datasets) has been reanalysed."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002863 ; owl:annotatedTarget "One dataset is a reanalysis of previously published data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002864 ; owl:annotatedTarget "No post-translational-modifications are been included in the identified peptides of one dataset."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002865 ; owl:annotatedTarget "A dataset has one associated manuscript, which has been accepted but no PubMedID is available yet."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002866 ; owl:annotatedTarget "Literature reference associated with one dataset (including the authors, title, year and journal details). The value field can be used for the PubMedID, or to specify if one manuscript is just submitted or accepted, but it does not have a PubMedID yet."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002867 ; owl:annotatedTarget "This means that the experimental information available has been improved, for instance precursor charges were added."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000331 ; owl:annotatedTarget "OBSOLETE A linked scan performed on a sector instrument that incorporates at least one electric sector plus one magnetic sector. The electric sector field, E, and the accelerating voltage, V, are scanned simultaneously, so as to maintain the ratio E2/V at a constant value. This linked scan recordss a product ion spectrum of dissociation or other reactions occurring in a field free region (FFR) preceding the two sectors."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002868 ; owl:annotatedTarget "One dataset is not a reanalysis of previously published data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002869 ; owl:annotatedTarget "Bioconductor package mzR for reading and writing mass spectrometry data files."^^xsd:string . [] oboInOwl:hasDbXref "PMID:22113085"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002870 ; owl:annotatedTarget "Bioconductor package MSnbase provides infrastructure for manipulation, processing and visualization of mass spectrometry and proteomics data, ranging from raw to quantitative and annotated data."^^xsd:string . [] oboInOwl:hasDbXref "PMID:22111785"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002871 ; owl:annotatedTarget "Bioconductor package CAMERA for annotation of peak lists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002872 ; owl:annotatedTarget "Dataset identifier issued by the Panorama Public repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002873 ; owl:annotatedTarget "URI that allows the access to one dataset in the Panorama Public repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002874 ; owl:annotatedTarget "Thermo Scientific TSQ Altis Triple Quadrupole MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002875 ; owl:annotatedTarget "Thermo Scientific TSQ Quantis Triple Quadrupole MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000332 ; owl:annotatedTarget "OBSOLETE A linked scan performed on a sector mass spectrometer that incorporates at least one electric sector plus one magnetic sector in either order. The accelerating voltage is fixed and the magnetic field, B, and the electric field, E, are scanned simultaneously so as to maintain the ratio B2/E at a constant value. This linked scan records a precursor ion spectrum of dissociation or other reactions occurring in the field free region preceding the two sectors. The term B2/E linked scan is not recommended."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002876 ; owl:annotatedTarget "Thermo Scientific TSQ 9000 Triple Quadrupole MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002877 ; owl:annotatedTarget "Thermo Scientific Q Exactive HF-X Hybrid Quadrupole Orbitrap MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002878 ; owl:annotatedTarget "Software for the analysis of small molecules."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002879 ; owl:annotatedTarget "Metabolomics analysis software for LC-MS data from Nonlinear Dynamics."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002880 ; owl:annotatedTarget "Metabolomics analysis software from Thermo Fisher Scientific."^^xsd:string . [] oboInOwl:hasDbXref "PMID:23373753"^^xsd:string, "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002881 ; owl:annotatedTarget "Metabolite identification tool MyCompoundID."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002882 ; owl:annotatedTarget "Function used to calculate the study variable quantification value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002883 ; owl:annotatedTarget "Median function."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002884 ; owl:annotatedTarget "Function used to calculate the study variable quantification variation value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002885 ; owl:annotatedTarget "Standard error function."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000333 ; owl:annotatedTarget "OBSOLETE A linked scan performed on a sector instrument that incorporates at least one electric sector plus one magnetic sector placed in either order. The accelerating voltage is fixed while scanning the magnetic field, B, and electric field, E, simultaneously, so as to maintain the quantity B[1-(E/E0)]1/2/E at a constant value. This linked scan records a constant neutral mass loss (or gain) spectrum of dissociation or other reactions occurring in a field free region preceding the two sectors. E0 is the electric field required to transmit the singly charged analog of the desired neutral fragment. The term B[1-(E/E0)]1/2/E linked scan."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002886 ; owl:annotatedTarget "The value reported in a small molecule quantification."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002887 ; owl:annotatedTarget "The normalised abundance produced by Progenesis QI LC-MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002888 ; owl:annotatedTarget "The confidence score produced by a small molecule analysis software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002889 ; owl:annotatedTarget "The confidence score produced by Progenesis QI."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002890 ; owl:annotatedTarget "The fragmentation confidence score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002891 ; owl:annotatedTarget "The isotopic fit confidence score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000334 ; owl:annotatedTarget "OBSOLETE A tandem mass spectrometry method in which product ion spectra are recorded in a single m/z analyzer (such as a Paul Ion Trap or FTMS) in discreet steps over time. Ions in a specific m/z range are selected, dissociated, and the product ions analyzed sequentially in time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002892 ; owl:annotatedTarget "An attribute describing ion mobility searches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002893 ; owl:annotatedTarget "Abstract array of ion mobility data values. A more specific child term concept should be specified in data files to make precise the nature of the data being provided."^^xsd:string . [] oboInOwl:hasDbXref "PMID:273343401"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002894 ; owl:annotatedTarget "Unique chemical structure identifier for chemical compounds."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002895 ; owl:annotatedTarget "Compound identification information."^^xsd:string . [] oboInOwl:hasDbXref "PMID:29748461"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002896 ; owl:annotatedTarget "Confidence level for annotation of identified compounds as defined by the Metabolomics Standards Initiative (MSI). The value slot can have the values 'Level 0' until 'Level 4'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002897 ; owl:annotatedTarget "OBSOLETE Identifies a peak when no de-isotoping has been performed. The value slot reports the isotopomer peak, e.g. '2H', '13C', '15N', '18O', '31P'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002898 ; owl:annotatedTarget "Native format defined by scan=xsd:nonNegativeInteger."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000335 ; owl:annotatedTarget "OBSOLETE A tandem mass spectrometry method in which product ion spectra are recorded in m/z analyzers separated in space. Specific m/z separation functions are designed such that in one section of the instrument ions are selected, dissociated in an intermediate region, and the product ions are then transmitted to another analyser for m/z separation and data acquisition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002899 ; owl:annotatedTarget "msalign file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002900 ; owl:annotatedTarget "TopFD feature file format."^^xsd:string . [] oboInOwl:hasDbXref "PMID:27423895"^^xsd:string, "http://proteomics.informatics.iupui.edu/software/toppic/index.html"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002901 ; owl:annotatedTarget "TopPIC: a software tool for top-down mass spectrometry-based proteoform identification and characterization."^^xsd:string . [] oboInOwl:hasDbXref "http://proteomics.informatics.iupui.edu/software/toppic/index.html"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002902 ; owl:annotatedTarget "Top-down mass spectral feature detection."^^xsd:string . [] oboInOwl:hasDbXref "PMID:28453668"^^xsd:string, "http://proteomics.informatics.iupui.edu/software/topmg/index.html"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002903 ; owl:annotatedTarget "A mass graph-based approach for the identification of modified proteoforms using top-down tandem mass spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002904 ; owl:annotatedTarget "Proteoform level information."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002905 ; owl:annotatedTarget "Identification confidence metric for a proteoform."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002906 ; owl:annotatedTarget "Search engine specific proteoform scores."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002907 ; owl:annotatedTarget "Estimation of the global false discovery rate of proteoforms."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002908 ; owl:annotatedTarget "Estimation of the local false discovery rate of proteoforms."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002909 ; owl:annotatedTarget "Estimated statistical threshold at proteoform-level."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002910 ; owl:annotatedTarget "Threshold for the global false discovery rate of proteoforms."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002911 ; owl:annotatedTarget "Threshold for the local false discovery rate of proteoforms."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002912 ; owl:annotatedTarget "Search engine input parameters specific to TopPIC."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000020 ; owl:annotatedTarget "Describes the acquisition data type produced by a tandem mass spectrometry experiment."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000336 ; owl:annotatedTarget "The loss of an uncharged species during a rearrangement process. The value slot holds the molecular formula in Hill notation of the neutral loss molecule, see PMID: 21182243. This term must be used in conjunction with a child of the term MS:1002307 (fragmentation ion type)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002913 ; owl:annotatedTarget "Fixed modifications for TopPIC searching."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002914 ; owl:annotatedTarget "N-terminal forms of proteins allowed in TopPIC searching."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002915 ; owl:annotatedTarget "Error tolerance for precursor and fragment masses in PPM."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002916 ; owl:annotatedTarget "Maximum value of the mass shift (in Dalton) of an unexpected modification."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002917 ; owl:annotatedTarget "Minimum value of the mass shift (in Dalton) of an unexpected modification."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002918 ; owl:annotatedTarget "Maximum number of unexpected modifications in a proteoform spectrum match."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000337 ; owl:annotatedTarget "OBSOLETE Serial product ions from dissociation of selected precursor ions where n refers to the number of stages of dissociation. The term granddaughter ion is deprecated."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002919 ; owl:annotatedTarget "Spectrum-level cutoff type for filtering identified proteoform spectrum matches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002920 ; owl:annotatedTarget "Spectrum-level cutoff value for filtering identified proteoform spectrum matches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002921 ; owl:annotatedTarget "Proteoform-level cutoff type for filtering identified proteoform spectrum matches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002922 ; owl:annotatedTarget "Proteoform-level cutoff value for filtering identified proteoform spectrum matches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002923 ; owl:annotatedTarget "P-value and E-value estimation using generating function."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000338 ; owl:annotatedTarget "OBSOLETE The specific scan functions or processes that record the appropriate generation of product ion or ions of any m/z selected precursor ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002924 ; owl:annotatedTarget "Number of combined spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002925 ; owl:annotatedTarget "The text file containing the information of common PTMs."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002926 ; owl:annotatedTarget "Number of threads used in TopPIC."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002927 ; owl:annotatedTarget "Proteoform identification using TopFD feature file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002928 ; owl:annotatedTarget "TopPIC spectrum-level E-value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000339 ; owl:annotatedTarget "OBSOLETE The mass spectrum recorded from any mass spectrometer in which the appropriate scan function can be set to record the appropriate generation product ion or ions of m/z selected precursor ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002929 ; owl:annotatedTarget "TopPIC spectrum-level FDR."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002930 ; owl:annotatedTarget "TopPIC proteoform-level FDR."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002931 ; owl:annotatedTarget "TopPIC spectrum-level p-value."^^xsd:string . [] oboInOwl:hasDbXref "PMID:27291504"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002932 ; owl:annotatedTarget "Modification identification score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002933 ; owl:annotatedTarget "TopPIC:MIScore threshold."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000340 ; owl:annotatedTarget "OBSOLETE An ion that reacts to form particular product ions. The reaction can be unimolecular dissociation, ion/molecule reaction, isomerization, or change in charge state. The term parent ion is deprecated."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002934 ; owl:annotatedTarget "Search engine input parameters specific to TopMG."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002935 ; owl:annotatedTarget "Fixed modifications for TopMG searching."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002936 ; owl:annotatedTarget "N-terminal forms of proteins allowed in TopMG searching."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002937 ; owl:annotatedTarget "Error tolerance for precursor and fragment masses in PPM."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002938 ; owl:annotatedTarget "Maximum value of the mass shift (in Dalton)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002939 ; owl:annotatedTarget "Spectrum-level cutoff type for filtering identified proteoform spectrum matches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000341 ; owl:annotatedTarget "Spectrum generated by scanning precursor m/z while monitoring a fixed product m/z."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002940 ; owl:annotatedTarget "Spectrum-level cutoff value for filtering identified proteoform spectrum matches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002941 ; owl:annotatedTarget "Proteoform-level cutoff type for filtering identified proteoform spectrum matches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002942 ; owl:annotatedTarget "Proteoform-level cutoff value for filtering identified proteoform spectrum matches."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002943 ; owl:annotatedTarget "The text file containing the information of common PTMs."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002944 ; owl:annotatedTarget "Number of threads used in TopMG."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002945 ; owl:annotatedTarget "Proteoform identification using TopFD feature file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000342 ; owl:annotatedTarget "OBSOLETE An ion formed as the product of a reaction involving a particular precursor ion. The reaction can be unimolecular dissociation to form fragment ions, an ion/molecule reaction, or simply involve a change in the number of charges. The term fragment ion is deprecated. The term daughter ion is deprecated."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002946 ; owl:annotatedTarget "Gap size in constructing proteoform graph."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002947 ; owl:annotatedTarget "Maximum number of variable PTMs."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002948 ; owl:annotatedTarget "Maximum number of variable PTMs in a proteoform graph gap."^^xsd:string . [] oboInOwl:hasDbXref "PMID:29327814"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002949 ; owl:annotatedTarget "Protein filtering using ASF-DIAGONAL method."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000343 ; owl:annotatedTarget "OBSOLETE A mass spectrum recorded from any spectrometer in which the appropriate m/z separation scan function is set to record the product ion or ions of selected precursor ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002950 ; owl:annotatedTarget "TopMG spectrum-level E-value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002951 ; owl:annotatedTarget "TopMG spectrum-level FDR."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002952 ; owl:annotatedTarget "TopMG proteoform-level FDR."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002953 ; owl:annotatedTarget "TopMG spectrum-level p-value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002954 ; owl:annotatedTarget "Structural molecular descriptor for the effective interaction area between the ion and neutral gas measured in ion mobility mass spectrometry."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000344 ; owl:annotatedTarget "OBSOLETE A charged product of a series of consecutive reactions that includes product ions, 1st generation product ions, 2nd generation product ions, etc. Given the sequential fragmentation scheme: M1+ -> M2+ -> M3+ -> M4+ -> M5+. M4+ is the precursor ion of M5+, a 1st generation product ion of M3+, a 2nd generation product ion of M2+ and a 3rd generation product ion of M1+."^^xsd:string . [] oboInOwl:hasDbXref "PMID:24476540"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002955 ; owl:annotatedTarget "Refined High Resolution mass spectrometry confidence level for annotation of identified compounds as proposed by Schymanski et al. The value slot can have the values 'Level 1', 'Level 2', 'Level 2a', 'Level 2b', 'Level 3', 'Level 4', and 'Level 5'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002956 ; owl:annotatedTarget "A mass spectrometry peak that represents one or more isotopic ions. The value slot contains a description of the represented isotope set, e.g. 'M+1 peak'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002957 ; owl:annotatedTarget "The described isotopomer mass spectrometric signal. The value slot contains a description of the represented isotopomer, e.g. '13C peak', '15N peak', '2H peak', '18O peak' or '31P peak'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002958 ; owl:annotatedTarget "The described isotopologue mass spectrometric signal. The value slot contains a description of the represented isotopologue, e.g. '13C1 peak' or '15N1 peak'."^^xsd:string . [] oboInOwl:hasDbXref "https://goldbook.iupac.org/html/I/I03289.html"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002959 ; owl:annotatedTarget "One of several species (or molecular entities) that have the same atomic composition (molecular formula) but different line formulae or different stereochemical formulae."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000345 ; owl:annotatedTarget "Detector comprising several ion collection elements, arranged in a line or grid where each element is an individual detector."^^xsd:string . [] oboInOwl:hasDbXref "https://goldbook.iupac.org/html/I/I03352.html"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002960 ; owl:annotatedTarget "An isomer that differs from another only in the spatial distribution of the constitutive isotopic atoms."^^xsd:string . [] oboInOwl:hasDbXref "https://goldbook.iupac.org/html/I/I03351.html"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002961 ; owl:annotatedTarget "A molecular entity that differs only in isotopic composition (number of isotopic substitutions)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002962 ; owl:annotatedTarget "The arithmetic mean."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002963 ; owl:annotatedTarget "The coefficient of variation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002964 ; owl:annotatedTarget "Lipidomics analysis software."^^xsd:string . [] oboInOwl:hasDbXref "PMID:29058722"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002965 ; owl:annotatedTarget "Lipid Data Analyzer software for lipid quantification."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002966 ; owl:annotatedTarget "The Lipid Data Analyzer native chrom format."^^xsd:string . [] oboInOwl:hasDbXref "PMID:28753264"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002967 ; owl:annotatedTarget "Software for identification of phospholipids by high-throughput processing of LC-MS and shotgun lipidomics datasets."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000021 ; owl:annotatedTarget "Status of the reflectron, turned on or off."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000346 ; owl:annotatedTarget "A surface that is held at high potential such that ions striking the surface produce electrons that are subsequently detected."^^xsd:string . [] oboInOwl:hasDbXref "PMID:22272252"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002968 ; owl:annotatedTarget "Software for consensual cross-platform lipidomics."^^xsd:string . [] oboInOwl:hasDbXref "PMID:28693421"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002969 ; owl:annotatedTarget "An automated workflow for rule-based lipid identification using untargeted high-resolution tandem mass spectrometry data."^^xsd:string . [] oboInOwl:hasDbXref "PMID:27186799"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002970 ; owl:annotatedTarget "Open-source software for automated phospholipid tandem mass spectrometry identification."^^xsd:string . [] oboInOwl:hasDbXref "PMID:28660581"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002971 ; owl:annotatedTarget "LC-MS-based lipidomics and automated identification of lipids using the LipidBlast in-silico MS/MS library."^^xsd:string . [] oboInOwl:hasDbXref "PMID:25433698"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002972 ; owl:annotatedTarget "A computational lipid identification solution for untargeted lipidomics on data-independent acquisition tandem mass spectrometry platforms."^^xsd:string . [] oboInOwl:hasDbXref "PMID:28405621"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002973 ; owl:annotatedTarget "A computational workflow for the discovery of lipids for the identification of eicosanoid-phosphoinositides in platelets."^^xsd:string . [] oboInOwl:hasDbXref "PMID:29705063"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002974 ; owl:annotatedTarget "An integrated software package for high-confidence lipid identification."^^xsd:string . [] oboInOwl:hasDbXref "PMID:28158427"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002975 ; owl:annotatedTarget "An-open source software for identifying lipids in LC-MS/MS-based lipidomics data."^^xsd:string . [] oboInOwl:hasDbXref "PMID:24244551"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002976 ; owl:annotatedTarget "Analysis of lipid experiments, a calculator for m/z values of intact lipid molecules (MS1)."^^xsd:string . [] oboInOwl:hasDbXref "PMID:29786091"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002977 ; owl:annotatedTarget "Analysis of lipid experiments 123, a calculator with m/z values of intact lipid molecules (MS1) and their fragment ions at the MS2 and MS3 level."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000347 ; owl:annotatedTarget "One of a series of electrodes in a photomultiplier tube. Such an arrangement is able to amplify the current emitted by the photocathode."^^xsd:string . [] oboInOwl:hasDbXref "PMID:17165823"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002978 ; owl:annotatedTarget "Software tool for the quantitative analysis of mass spectrometric lipidome data."^^xsd:string . [] oboInOwl:hasDbXref "PMID:27322848"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002979 ; owl:annotatedTarget "Adduct-Based lipidomics software for the discovery and identification of oxidative stress biomarkers."^^xsd:string . [] oboInOwl:hasDbXref "PMID:17720531"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002980 ; owl:annotatedTarget "Lipid qualitative/quantitative analysis software for identification and quantitation of complex lipid molecular species."^^xsd:string . [] oboInOwl:hasDbXref "http://www.profiproteomics.fr/proline/"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002981 ; owl:annotatedTarget "The Proline software suite for mass spectrometry based proteomics."^^xsd:string . [] oboInOwl:hasDbXref "PMID:15858974"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002982 ; owl:annotatedTarget "PepNovo tool for de novo peptide sequencing."^^xsd:string . [] oboInOwl:hasDbXref "PMID:20329752"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002983 ; owl:annotatedTarget "pNovo tool for de novo peptide sequencing and identification using HCD spectra."^^xsd:string . [] oboInOwl:hasDbXref "PMID:26122521"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002984 ; owl:annotatedTarget "Novor real-time peptide de novo sequencing software tool."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002985 ; owl:annotatedTarget "Digestion of proteins separated by gel electrophoresis for mass spectrometric characterization of proteins and proteomes."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002986 ; owl:annotatedTarget "Digestion of proteins in solution for mass spectrometric characterization of proteins and proteomes."^^xsd:string . [] oboInOwl:hasDbXref "PMID:29682971"^^xsd:string, "https://bitbucket.org/levitsky/identipy"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002987 ; owl:annotatedTarget "IdentiPy."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000348 ; owl:annotatedTarget "A detector for spatially disperse ion beams in which all ions simultaneously impinge on the detector plane."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002988 ; owl:annotatedTarget "The IdentiPy result 'RHNS'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002989 ; owl:annotatedTarget "The IdentiPy result 'hyperscore'."^^xsd:string . [] oboInOwl:hasDbXref "https://github.com/mobiusklein/ms_deisotope"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002990 ; owl:annotatedTarget "ms_deisotope, a library for deisotoping and charge state deconvolution of mass spectra."^^xsd:string . [] oboInOwl:hasDbXref "https://github.com/mobiusklein/psims"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002991 ; owl:annotatedTarget "python-psims, a library for generating mzML and mzIdentML."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000349 ; owl:annotatedTarget "A detector in which ions strike a conversion dynode to produce electrons that in turn strike a phosphor and the resulting photons are detected by a photomultiplier."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002995 ; owl:annotatedTarget "Posterior error probability of the best identified peptide of the Andromeda search engine."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002996 ; owl:annotatedTarget "Peak list file format of the Andromeda search engine."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002997 ; owl:annotatedTarget "Index number of a reanalysis within a ProteomeXchange reprocessed dataset identifier container (RPXD)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002998 ; owl:annotatedTarget "Shimadzu Scientific Instruments LCMS-9030 Q-TOF MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1002999 ; owl:annotatedTarget "Shimadzu Scientific Instruments LCMS-8060 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003000 ; owl:annotatedTarget "Shimadzu Scientific Instruments LCMS-8050 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003001 ; owl:annotatedTarget "Shimadzu Scientific Instruments LCMS-8045 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003002 ; owl:annotatedTarget "Shimadzu Scientific Instruments LCMS-8040 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000350 ; owl:annotatedTarget "A detector in which the ion beam is focused onto a point and the individual ions arrive sequentially."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003003 ; owl:annotatedTarget "Shimadzu Scientific Instruments LCMS-2020."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003004 ; owl:annotatedTarget "Bruker Daltonics' maXis II."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003005 ; owl:annotatedTarget "Bruker Daltonics' timsTOF Pro."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003006 ; owl:annotatedTarget "Array of population mean ion mobility values based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, normalized for the local conditions and reported in volt-second per square centimeter, corresponding to a spectrum of individual peaks encoded with an m/z array."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003007 ; owl:annotatedTarget "Array of raw ion mobility values (K or K0) based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, corresponding to a spectrum of individual peaks encoded with an m/z array."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000351 ; owl:annotatedTarget "A detector in which the charged particles are accelerated to a high velocity and impinge on a conversion dynode, emitting secondary electrons. The electrons are accelerated onto a phosphor screen, which emits photons that are in turn detected using a photomultiplier or other photon detector."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003008 ; owl:annotatedTarget "Array of raw ion mobility values based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, normalized for the local conditions and reported in volt-second per square centimeter, corresponding to a spectrum of individual peaks encoded with an m/z array."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003009 ; owl:annotatedTarget "Shimadzu Biotech LCD file format."^^xsd:string . [] oboInOwl:hasDbXref "PMID:29123162"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003010 ; owl:annotatedTarget "Software for lipidome-specific prediction and identification of oxidized phospholipids from LC-MS datasets."^^xsd:string . [] oboInOwl:hasDbXref "PMID:30295672"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003011 ; owl:annotatedTarget "Sequence-tag-based search engine pFind."^^xsd:string . [] oboInOwl:hasDbXref "PMID:15044235"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003012 ; owl:annotatedTarget "Kernel mass spectral dot product scoring function."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003013 ; owl:annotatedTarget "i3-tms search engine and data-analysis software."^^xsd:string . [] oboInOwl:hasDbXref "PMID:28394336"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003014 ; owl:annotatedTarget "A database search-based peptide identification tool."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000352 ; owl:annotatedTarget "OBSOLETE Electrons that are ejected from a sample surface as a result of bombardment by a primary beam of atoms, ions or photons. WAS IN DETECTOR TYPE. Where should it go."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003015 ; owl:annotatedTarget "Peptide that is shared between protein groups and assigned to the protein group with the largest number of identified peptides."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003016 ; owl:annotatedTarget "Fraction of peptide evidence attributable to a protein or a set of indistinguishable proteins."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003017 ; owl:annotatedTarget "Fraction of peptide evidence attributable to a group of proteins."^^xsd:string . [] oboInOwl:hasDbXref "https://philosopher.nesvilab.org/"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003018 ; owl:annotatedTarget "General proteomics processing toolkit for shotgun proteomics."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000353 ; owl:annotatedTarget "Ion formed by the interaction of an ion with one or more atoms or molecules to form an ion containing all the constituent atoms of the precursor ion as well as the additional atoms from the associated atoms or molecules."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003019 ; owl:annotatedTarget "Representation of chromatographic pressure versus time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003020 ; owl:annotatedTarget "Representation of the chromatographic flow rate versus time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003021 ; owl:annotatedTarget "Post-translational modification which is assumed to be present at each instance of a residue type."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003022 ; owl:annotatedTarget "Post-translational modification which may or may not be present at a residue type."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003023 ; owl:annotatedTarget "Cross-Linking MS search engine."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003024 ; owl:annotatedTarget "The OpenPepXL score for a cross-link spectrum match."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003025 ; owl:annotatedTarget "A named element that is an attribute in a proteomics standards file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000354 ; owl:annotatedTarget "OBSOLETE A planar cyclic ion that obeys the Hueckel (4n + 2) rule where n is a positive integer representing the number of conjugated Pi electrons. Charge delocalization leads to greater stability compared to a hypothetical localized structure."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003026 ; owl:annotatedTarget "A named element that is an attribute in a mzIdentML file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003027 ; owl:annotatedTarget "A named element that is an attribute in a mzML file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003028 ; owl:annotatedTarget "Thermo Scientific Orbitrap Exploris 480 Quadrupole Orbitrap MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003029 ; owl:annotatedTarget "Thermo Scientific Orbitrap Eclipse mass spectrometer with Tribrid architecture consisting of quadrupole mass filter, linear ion trap and Orbitrap mass analyzers."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003030 ; owl:annotatedTarget "Minimum number of significant unique sequences required in a protein hit. The setting is only relevant if the protein grouping strategy is 'family clustering'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003031 ; owl:annotatedTarget "Main identifier of a CPTAC dataset."^^xsd:string . [] oboInOwl:hasDbXref "PMID:25938372"^^xsd:string, "http://prime.psc.riken.jp/Metabolomics_Software/MS-DIAL"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003032 ; owl:annotatedTarget "The confidence code to describe the confidence of annotated compounds as defined by the MS-DIAL program."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000355 ; owl:annotatedTarget "OBSOLETE Ions that have similar chemical valence, for example the acetyl cation CH3-CO+ and the thioacetyl cation CH3-CS+."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003033 ; owl:annotatedTarget "Non-inherent characteristic attributed to a molecular entity."^^xsd:string . [] oboInOwl:hasDbXref "https://en.wikipedia.org/wiki/Atom"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003034 ; owl:annotatedTarget "Smallest constituent unit of ordinary matter that constitutes a chemical element."^^xsd:string . [] oboInOwl:hasDbXref "https://en.wikipedia.org/wiki/Small_molecule"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003035 ; owl:annotatedTarget "Low molecular weight (< 900 daltons) organic compound that may regulate a biological process."^^xsd:string . [] oboInOwl:hasDbXref "https://en.wikipedia.org/wiki/Metabolite"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003036 ; owl:annotatedTarget "Small molecule that is the intermediate end product of metabolism."^^xsd:string . [] oboInOwl:hasDbXref "https://en.wikipedia.org/wiki/Ribonucleotide"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003037 ; owl:annotatedTarget "Nucleotide containing ribose as its pentose component."^^xsd:string . [] oboInOwl:hasDbXref "https://en.wikipedia.org/wiki/Deoxyribonucleotide"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003038 ; owl:annotatedTarget "Monomer, or single unit, of DNA, or deoxyribonucleic acid."^^xsd:string . [] oboInOwl:hasDbXref "https://en.wikipedia.org/wiki/Amino_acid"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003039 ; owl:annotatedTarget "Organic molecule that contains amine (-NH2) and carboxyl (-COOH) functional groups, along with a side chain (R group) that is specific to each amino acid."^^xsd:string . [] oboInOwl:hasDbXref "https://en.wikipedia.org/wiki/Monosaccharide"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003040 ; owl:annotatedTarget "Simplest form of sugar and the most basic units of carbohydrate that cannot be further hydrolyzed to a simpler molecule."^^xsd:string . [] oboInOwl:hasDbXref "https://en.wikipedia.org/wiki/Nucleic_acid"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003041 ; owl:annotatedTarget "Molecule composed of a chain of nucleotides."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000356 ; owl:annotatedTarget "OBSOLETE A planar cyclic ion with 4n ? electrons and is therefore not aromatic."^^xsd:string . [] oboInOwl:hasDbXref "https://en.wikipedia.org/wiki/Polysaccharide"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003042 ; owl:annotatedTarget "Polymeric carbohydrate molecules composed of long chains of monosaccharide units bound together by glycosidic linkages."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003043 ; owl:annotatedTarget "Number of amino acid residues in a peptide, commonly referred to as the peptide length."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003044 ; owl:annotatedTarget "Number of amino acid residue bonds that should have been cleaved by the cleavage agent used, but were not."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003045 ; owl:annotatedTarget "Process of mapping a peptide sequence to a protein sequence."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003046 ; owl:annotatedTarget "Nonphysical characteristic attributed to the result of peptide-to-protein mapping."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003047 ; owl:annotatedTarget "Offset in number of residues from the n terminus of the protein at which the peptide begins. Use 1 when the first residue of the peptide sequence is the first residue of the protein sequence."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003048 ; owl:annotatedTarget "Total number of termini that match standard rules for the cleavage agent, 2 when both termini match cleavage agent rules, 1 when only one terminus does, and 0 if neither terminus matches cleavage agent rules."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003049 ; owl:annotatedTarget "Peptide that contains zero or more mass modifications on the termini or side chains of its amino acid residues, and may be differentiated from other peptidoforms with the same peptide sequence but different mass modification configurations."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000357 ; owl:annotatedTarget "OBSOLETE An ion formed by the association of a cation with a neutral molecule, M, for example [M+ Na]+ and [M + K]+. The terms quasi-molecular ion and pseudo-molecular ion should not be used."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003050 ; owl:annotatedTarget "Non-inherent characteristic attributed to a peptidoform."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003051 ; owl:annotatedTarget "Peptidoform that has formed an adduct with an ion, thereby rendering it potentially detectable with a mass spectrometer. Commonly called a 'precursor' or 'precursor ion' or 'parent ion'."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003052 ; owl:annotatedTarget "Inherent or measurable characteristic of a peptidoform ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003053 ; owl:annotatedTarget "Mass-to-charge ratio of a peptidoform ion composed of the most common isotope of each atom computed from the putative knowledge of its molecular constituents."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003054 ; owl:annotatedTarget "Mass-to-charge ratio of a peptidoform ion computed from the putative knowledge of its molecular constituents, averaged over the distribution of naturally occurring isotopes."^^xsd:string . [] oboInOwl:hasDbXref "https://en.wikipedia.org/wiki/Adduct"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003055 ; owl:annotatedTarget "Product of a direct addition of two or more distinct molecules, resulting in a single reaction product containing all atoms of all components. The resultant is considered a distinct molecular species."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000358 ; owl:annotatedTarget "OBSOLETE An ion formed by a multi-component atomic or molecular assembly of one or more ions with atoms or molecules, such as [(H20)nH]+, [(NaCl)nNa]+ and [(H3PO3)nHPO3]-."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003056 ; owl:annotatedTarget "Physical measurable characteristic of an adduct ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003057 ; owl:annotatedTarget "Ordinal number of the scan indicating its order of acquisition within a mass spectrometry acquisition run."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003058 ; owl:annotatedTarget "Inherent or measurable characteristic of a spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003059 ; owl:annotatedTarget "Number of peaks or features in a spectrum. For a peak-picked spectrum, this will correspond to the number of data points. For a non-peak-picked spectrum, this corresponds to the number of features discernable in the spectrum, which will be fewer than the number of data points."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003060 ; owl:annotatedTarget "Number of data points in a spectrum. For a peak-picked spectrum, this will correspond to the number of peaks. For a non-peak-picked spectrum, this corresponds to the number of values in the data array, which are not all peaks."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003061 ; owl:annotatedTarget "Label attached to a spectrum uniquely naming it within a collection of spectra, often in a spectral library. It is often a string combination of peptide sequence, charge, mass modifications, collision energy, but will obviously be different for small molecules or unidentified spectra. It must be unique within a collection."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000359 ; owl:annotatedTarget "OBSOLETE A radical cation or anion in which the charge site and the unpaired electron spin are both formally located in the same atom or group of atoms, as opposed to the spatially separate electronic configuration of distonic ions. The radical cation of methanol, CH3OH+, in which the charge and spin sites are formally located at the O atom is an example of a conventional ion, whereas .CH2-OH2+ is a distonic ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003062 ; owl:annotatedTarget "Integer index value that indicates the spectrum's ordered position within a spectral library. By custom, index counters should begin with 0."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003063 ; owl:annotatedTarget "PSI universal spectrum identifier (USI) multipart key that uniquely identifies a spectrum available in a ProteomeXchange datasets or spectral library."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003064 ; owl:annotatedTarget "Non-inherent characteristic attributed to spectrum aggregation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003065 ; owl:annotatedTarget "Categorization of a spectrum based on its type of aggregation (e.g., individual spectrum, consensus spectrum, best replicate spectrum, etc.)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003066 ; owl:annotatedTarget "Spectrum that is not the result of some aggregation process."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003067 ; owl:annotatedTarget "Spectrum that is the result of merging several replicate spectra to form a spectrum that is more representative of its class and ideally less noisy that any of its source replicates."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003068 ; owl:annotatedTarget "Spectrum that is considered the most representative from a pool of replicate spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000360 ; owl:annotatedTarget "OBSOLETE A product ion whose formation reveals structural or compositional information of its precursor. For instance, the phenyl cation in an electron ionization mass spectrum is a diagnostic ion for benzene and derivatives."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003069 ; owl:annotatedTarget "Number of replicate spectra available for use during the aggregation process."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003070 ; owl:annotatedTarget "Number of replicate spectra used during the aggregation process. This is generally applicable when there are many replicates available, but some are discarded as being low S/N, blended, or otherwise unsuitable, and the remaining set is then used for merging via a consensus algorithm."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003071 ; owl:annotatedTarget "Non-inherent characteristic attributed to spectrum aggregation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003072 ; owl:annotatedTarget "Categorization of a spectrum based on its origin (e.g., observed spectrum, predicted spectrum, demultiplexed spectrum, etc.)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003073 ; owl:annotatedTarget "Spectrum that originates from an analysis attempt of a single analyte species on an instrument."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003074 ; owl:annotatedTarget "Spectrum that originates from a compututational algorithm that attempts to predict spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003075 ; owl:annotatedTarget "Spectrum that originates from an attempted extraction of a single ion spieces from a multiplexed spectrum that contains multiple ion species."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003076 ; owl:annotatedTarget "Spectrum provided in the form of plain numerical values without any information pertaining to the interpretation of features."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003077 ; owl:annotatedTarget "Spectrum provided in a form where specific features of the spectrum are interpreted to provide putative explanations for some feature."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000361 ; owl:annotatedTarget "OBSOLETE An ion formed by ionization of a dimer or by the association of an ion with its neutral counterpart such as [M2]+ or [M-H-M]+."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003078 ; owl:annotatedTarget "Non-inherent characteristic attributed to an interpreted spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003079 ; owl:annotatedTarget "Fraction of intensity summed from all unassigned peaks divided by the intensity summed from all peaks in the spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003080 ; owl:annotatedTarget "Fraction of intensity summed from unassigned peaks among the top 20 divided by the intensity summed from all top 20 peaks in the spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003081 ; owl:annotatedTarget "Monoisotopic mass delta in Daltons of an amino acid residue modification whose atomic composition or molecular identity has not been determined. This term should not be used for modifications of known molecular identity such as those available in Unimod, RESID or PSI-MOD. This term MUST NOT be used inside the element in mzIdentML."^^xsd:string . [] oboInOwl:hasDbXref "PMID:25938372"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003082 ; owl:annotatedTarget "Data processing software for untargeted metabolomics and lipidomics that supports multiple instruments and MS vendors."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003083 ; owl:annotatedTarget "Data file that contains original data as generated by an instrument, although not necessarily in the original data format (i.e. an original raw file converted to a different format is still a raw data file)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000362 ; owl:annotatedTarget "OBSOLETE A radical cation or anion in which the charge site and the unpaired electron spin cannot be both formally located in the same atom or group of atoms as it can be with a conventional ion. For example, CH2-OH2+ is a distonic ion whereas the radical cation of methanol, CH3OH+ is a conventional ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003084 ; owl:annotatedTarget "File that contains data that has been substantially processed or transformed from what was originally acquired by an instrument."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003085 ; owl:annotatedTarget "Intensity of the precursor ion in the previous MSn-1 scan (prior in time to the referencing MSn scan). For an MS2 scan, this means the MS1 precursor intensity. It is unspecified on whether this is an apex (across m/z) intensity, integrated (across m/z) intensity, a centroided peak intensity of unknown origin, or even summed across several isotopes."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003086 ; owl:annotatedTarget "Intensity of the precursor ion current as measured by its apex point over time and m/z. It is unspecified whether this is the intensity of the selected isotope or the most intense isotope."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003087 ; owl:annotatedTarget "Dataset for which the identifications and/or spectra/traces are in formats that can be parsed by the hosting data repository such that internal references between identifications and spectra/traces are preserved and browsable at the repository. However, some metadata is not properly described due to lack of CV terms or some auxiliary data, such as data used to create a spectral library or a sequence search database crucial to the analysis, is not available."^^xsd:string . [] oboInOwl:hasDbXref "https://github.com/biospi/pwiz"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003088 ; owl:annotatedTarget "Data array compression using mantissa bit truncation followed by zlib compression."^^xsd:string . [] oboInOwl:hasDbXref "https://github.com/biospi/pwiz"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003089 ; owl:annotatedTarget "Data array compression using mantissa bit truncation, delta prediction and zlib compression."^^xsd:string . [] oboInOwl:hasDbXref "https://github.com/biospi/pwiz"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003090 ; owl:annotatedTarget "Data array compression using mantissa bit truncation, linear prediction and zlib compression."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000363 ; owl:annotatedTarget "OBSOLETE A positively charged lower-valency ion of the nonmetallic elements. The methenium ion is CH3+. Other examples are the oxenium, sulfenium, nitrenium, phosphenium, and halenium ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003091 ; owl:annotatedTarget "Settable parameter for a binary data compression event."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003092 ; owl:annotatedTarget "Number of extraneous mantissa bits truncated to improve subsequent compression."^^xsd:string . [] oboInOwl:hasDbXref "https://en.wikipedia.org/wiki/Lys-N"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003093 ; owl:annotatedTarget "Metalloendopeptidase found in the mushroom Grifola frondosa that cleaves proteins on the amino side of lysine residues."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003094 ; owl:annotatedTarget "Thermo Scientific Orbitrap Exploris 240 Quadrupole Orbitrap MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003095 ; owl:annotatedTarget "Thermo Scientific Orbitrap Exploris 120 Quadrupole Orbitrap MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003096 ; owl:annotatedTarget "Thermo Scientific LTQ Orbitrap Velos Pro, often just referred to as the Orbitrap Velos Pro."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000364 ; owl:annotatedTarget "OBSOLETE A product ion that results from the dissociation of a precursor ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003097 ; owl:annotatedTarget "The probability based MaxQuant protein group score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003098 ; owl:annotatedTarget "Peptide probability from Andromeda."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003099 ; owl:annotatedTarget "Peptide probability from MaxQuant-DIA algorithm."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003100 ; owl:annotatedTarget "PSM evidence score from MaxQuant-DIA algorithm."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003101 ; owl:annotatedTarget "PSM evidence PEP probability from MaxQuant-DIA algorithm."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000365 ; owl:annotatedTarget "OBSOLETE An atomic or molecular species having a net positive or negative electric charge."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003102 ; owl:annotatedTarget "Term for a comment field withing the NIST msp file format"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003103 ; owl:annotatedTarget "Interpretation format used for annotating individual spectrum ion peaks."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003104 ; owl:annotatedTarget "Interpretation format designed primarily for peptides, with allowances for generic chemical formulas and other miscellaneous named ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003105 ; owl:annotatedTarget "Interpretation format designed specifically for cross-linked peptide ion peaks."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003106 ; owl:annotatedTarget "Interpretation format designed specifically for glycan ion peaks."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003107 ; owl:annotatedTarget "Interpretation format designed specifically for lipid ion peaks."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003108 ; owl:annotatedTarget "PatternLab for Proteomics is an integrated computational environment for analyzing shotgun proteomic data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003109 ; owl:annotatedTarget "Identifying cross-linked peptides in complex protein mixtures"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000366 ; owl:annotatedTarget "OBSOLETE An ion that differs only in the isotopic composition of one or more of its constituent atoms. For example CH4+ and CH3D+ or 10BF3 and 11BF3. The term isotopologue is a contraction of isotopic homologue."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003110 ; owl:annotatedTarget "SIM-XL identification search engine score"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003111 ; owl:annotatedTarget "Quantification of cross-linked peptides in complex protein mixtures"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003112 ; owl:annotatedTarget "Thermo Scientific Orbitrap ID-X mass spectrometer with Tribrid architecture consisting of quadrupole mass filter, linear ion trap and Orbitrap mass analyzers."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003113 ; owl:annotatedTarget "The OpenMS ConsesusID tool posterior error probability"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003114 ; owl:annotatedTarget "The score of the best PSM selected by the underlying identification tool"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003115 ; owl:annotatedTarget "The OpenMS Target-decoy q-values at PSM level"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000367 ; owl:annotatedTarget "OBSOLETE Isomeric ion having the same numbers of each isotopic atom but differing in their positions. Isotopomeric ions can be either configurational isomers in which two atomic isotopes exchange positions or isotopic stereoisomers. The term isotopomer is a shortening of isotopic isomer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003116 ; owl:annotatedTarget "The OpenMS Target-decoy q-values at peptide sequence level"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003117 ; owl:annotatedTarget "The OpenMS Target-decoy q-values at protein level"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003118 ; owl:annotatedTarget "A Method for Efficient High-Confidence Protein Inference. The tool is part of the OpenMS framework"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003119 ; owl:annotatedTarget "Protein Posterior probability calculated by EPIFANY protein inference algorithm"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003120 ; owl:annotatedTarget "The data type LFQ intensity produced by OpenMS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000368 ; owl:annotatedTarget "OBSOLETE An ion that is formed with internal energy higher than the threshold for dissociation but with a lifetime great enough to allow it to exit the ion source and enter the mass spectrometer where it dissociates before detection."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003121 ; owl:annotatedTarget "The data type LFQ spectral count produced by OpenMS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003122 ; owl:annotatedTarget "Bruker Daltonics' rapiflex: MALDI TOF/TOF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003123 ; owl:annotatedTarget "Bruker Daltonics timsTOF series"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003124 ; owl:annotatedTarget "Bruker Daltonics' timsTOF fleX"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003125 ; owl:annotatedTarget "ProSight spectrum-level Q-value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003126 ; owl:annotatedTarget "ProSight spectrum-level P-score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000369 ; owl:annotatedTarget "OBSOLETE An ion formed by the removal of one or more electrons to form a positive ion or the addition off one or more electrons to form a negative ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003127 ; owl:annotatedTarget "ProSight spectrum-level E-value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003128 ; owl:annotatedTarget "ProSight spectrum-level C-score."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003129 ; owl:annotatedTarget "Estimation of the Q-value for proteoforms."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000370 ; owl:annotatedTarget "OBSOLETE An atomic or molecular species having a net negative electric charge."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003130 ; owl:annotatedTarget "ProSight proteoform-level Q-value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003131 ; owl:annotatedTarget "Isoform level information."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003132 ; owl:annotatedTarget "Identification confidence metric for a isoform."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003133 ; owl:annotatedTarget "Estimation of the Q-value for isoforms."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000371 ; owl:annotatedTarget "OBSOLETE Hyper-coordinated carbonium ion such as the penta-coordinated norbornyl cation. Note: Tri-coordinated carbenium ions are termed classical ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003134 ; owl:annotatedTarget "ProSight isoform-level Q-value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003135 ; owl:annotatedTarget "ProSight protein-level Q-value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003136 ; owl:annotatedTarget "Search engine input parameters specific to ProSight."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003137 ; owl:annotatedTarget "Search engine input parameters specific to TDPortal."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003138 ; owl:annotatedTarget "If true, runs delta m mode in ProSight."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003139 ; owl:annotatedTarget "If true, runs Subsequence Search mode in ProSight."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000372 ; owl:annotatedTarget "OBSOLETE A positively charged hypervalent ion of the nonmetallic elements. Examples are the methonium ion CH5+, the hydrogenonium ion H3+ and the hydronium ion H3O+. Other examples are the carbonium, oxonium, sulfonium, nitronium, diazonium, phosphonium, and halonium ions. Onium ions are not limited to monopositive ions; multiply-charged onium ions exist such as the gitonic (proximal) oxonium dication H4O2+ and the distonic oxonium dication H2O+-CH2-CH2-OH2+."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003140 ; owl:annotatedTarget "If true, runs Annotated Proteoform Search mode in ProSight."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003141 ; owl:annotatedTarget "ProSight: Database search engine for top-down proteomics."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003142 ; owl:annotatedTarget "TDPortal: Database search engine for top-down proteomics."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003143 ; owl:annotatedTarget "A data array of mass values."^^xsd:string . [] a owl:Axiom ; rdfs:label "32-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1003143 ; owl:annotatedTarget "binary-data-type:MS:1000521"^^xsd:string . [] a owl:Axiom ; rdfs:label "64-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1003143 ; owl:annotatedTarget "binary-data-type:MS:1000523"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003144 ; owl:annotatedTarget "SCIEX Triple Quad 7500."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1021/acs.jproteome.9b00328"^^xsd:string, "PMID:31755270"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003145 ; owl:annotatedTarget "Cross-platform software to convert Thermo RAW files to a number of open formats."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000373 ; owl:annotatedTarget "OBSOLETE Most abundant ion of an isotope cluster, such as the 11B79Br2 81Br+ ion of m/z 250 of the cluster of isotopologue molecular ions of BBr3. The term principal ion has also been used to describe ions that have been artificially isotopically enriched in one or more positions such as CH3 13CH3+ or CH2D2 +, but those are best defined as isotopologue ions."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1021/acs.jproteome.8b00717"^^xsd:string, "PMID:30576148"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003146 ; owl:annotatedTarget "Python module that helps handling various proteomics data analysis tasks."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1021/acs.jproteome.9b00205"^^xsd:string, "PMID:31290668"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003147 ; owl:annotatedTarget "Probability that one mass modification has been correctly localized to a specific residue as computed by PTMProphet."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1021/acs.jproteome.9b00205"^^xsd:string, "PMID:31290668"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003148 ; owl:annotatedTarget "PSM-specific average of the m best site probabilities over all potential sites where m is the number of modifications of a specific type, as computed by PTMProphet."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1021/acs.jproteome.9b00205"^^xsd:string, "PMID:31290668"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003149 ; owl:annotatedTarget " PTMProphet-computed PSM-specific normalized (0.0 – 1.0) measure of information content across all modifications of a specific type."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1021/acs.jproteome.9b00205"^^xsd:string, "PMID:31290668"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003150 ; owl:annotatedTarget " PTMProphet-computed PSM-specific measure of information content per modification type ranging from 0 to m, where m is the number of modifications of a specific type."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000374 ; owl:annotatedTarget "OBSOLETE An atomic or molecular species having a net positive electric charge."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003151 ; owl:annotatedTarget "SHA-256 (member of Secure Hash Algorithm-2 family) is a cryptographic hash function designed by the National Security Agency (NSA) and published by the NIST as a U. S. government standard. It is also used to verify file integrity."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003152 ; owl:annotatedTarget "Shimadzu Scientific Instruments GCMS-QP2010SE."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003153 ; owl:annotatedTarget "Array of raw ion mobility values from a drift time device, reported in seconds (or milliseconds), corresponding to a spectrum of individual peaks encoded with an m/z array."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003154 ; owl:annotatedTarget "Array of ion mobility values (K or K0) based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, as an average property of an analyte post peak-detection, weighted charge state reduction, and/or adduct aggregation, corresponding to a spectrum of individual peaks encoded with an m/z array."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000375 ; owl:annotatedTarget "OBSOLETE An ion formed by interaction of a neutral molecule with a proton and represented by the symbol [M + H]+, where M is the neutral molecule. The term 'protonated molecular ion,' 'quasi-molecular ion' and 'pseudo-molecular ion' are not recommended."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003155 ; owl:annotatedTarget "Array of ion mobility values based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, normalized for the local conditions and reported in volt-second per square centimeter, as an average property of an analyte post peak-detection, weighted charge state reduction, and/or adduct aggregation, corresponding to a spectrum of individual peaks encoded with an m/z array."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003156 ; owl:annotatedTarget "Array of mean ion mobility values from a drift time device, reported in seconds (or milliseconds), as an average property of an analyte post peak-detection, weighted charge state reduction, and/or adduct aggregation, corresponding to a spectrum of individual peaks encoded with an m/z array."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003157 ; owl:annotatedTarget "Array of m/z values representing the lower bound m/z of the quadrupole position at each point in the spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000022 ; owl:annotatedTarget "The length of the field free drift space in a time of flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000376 ; owl:annotatedTarget "OBSOLETE An ion, either a cation or anion, containing unpaired electrons in its ground state. The unpaired electron is denoted by a superscript dot alongside the superscript symbol for charge, such as for the molecular ion of a molecule M, that is, M+. Radical ions with more than one charge and/or more than one unpaired electron are denoted such as M(2+)(2). Unless the positions of the unpaired electron and charge can be associated with specific atoms, superscript charge designation should be placed before the superscript dot designation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003158 ; owl:annotatedTarget "Array of m/z values representing the upper bound m/z of the quadrupole position at each point in the spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003159 ; owl:annotatedTarget "Indicates an acquisition mode in which the isolation window is a full range, rather than a subset of the full range."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003160 ; owl:annotatedTarget "Proteomics Standards Initiative mzQC format for quality control data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003161 ; owl:annotatedTarget "Grouping term for quality control data formats."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1021/acs.jproteome.5b00780"^^xsd:string, "PMID:26653327"^^xsd:string, "https://github.com/cbielow/PTXQC/"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003162 ; owl:annotatedTarget "Proteomics (PTX) - QualityControl (QC) software for QC report generation and visualization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003163 ; owl:annotatedTarget "The set of analyte identifiers that compose an interpretation of a spectrum."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1021/ac4034455"^^xsd:string, "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003164 ; owl:annotatedTarget "QuaMeter IDFree software for QC metric calculation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000377 ; owl:annotatedTarget "OBSOLETE A stable ion whose structure is known with certainty. These ions are usually formed by direct ionization of a neutral molecule of known structure and are used to verify by comparison the structure of an unknown ion."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1021/acs.jproteome.5b00127"^^xsd:string, "PMID:25798920"^^xsd:string, "https://github.com/bittremieux/iMonDB"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003165 ; owl:annotatedTarget "iMonDB software to extract, store, and manage mass spectrometry instrument parameters from raw data files."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003166 ; owl:annotatedTarget "Fraction of intensity summed from all peaks that can be attributed to expected fragments of the analyte, divided by the intensity summed from all peaks in the spectrum"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003167 ; owl:annotatedTarget "The fraction of total intensities in the isolation window in the previous round of MS (i.e. the MSn-1 scan) that can be assigned to this identified analyte"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003168 ; owl:annotatedTarget "A free-text string providing additional information of the library spectrum not encoded otherwise, usually for human use and not parsed by software tools."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003169 ; owl:annotatedTarget "Sequence string describing the amino acids and mass modifications of a peptidoform using the PSI ProForma notation"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000378 ; owl:annotatedTarget "OBSOLETE An ion with internal energy sufficiently low that it does not rearrange or dissociate prior to detection in a mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003170 ; owl:annotatedTarget "A collection of spectra organized by their originating analyte, compiled deliberately for use in MS data analysis in future experiments"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003171 ; owl:annotatedTarget "An attribute of a spectral library"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003172 ; owl:annotatedTarget "An entry in a spectral library representing a spectrum"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003173 ; owl:annotatedTarget "An attribute that takes on a numeric value"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000379 ; owl:annotatedTarget "OBSOLETE An ion with sufficient energy to dissociate within the ion source."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003174 ; owl:annotatedTarget "The maximum value for this attribute"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003175 ; owl:annotatedTarget "The minimum value for this attribute"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003176 ; owl:annotatedTarget "The arithmetic mean value for this attribute"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000380 ; owl:annotatedTarget "A process whereby an electron is removed from an atom, ion, or molecule to produce an ion in its lowest energy state."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003177 ; owl:annotatedTarget "The standard deviation (exact value of population, or estimate from sample) of this attribute"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003178 ; owl:annotatedTarget "The coefficient of variation of this attribute, i.e. standard deviation divided by the mean"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000381 ; owl:annotatedTarget "An ionization process in which two excited atoms or molecules react to form a single positive ion and an electron."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003179 ; owl:annotatedTarget "The most appropriate summary value of the attribute, usually but not necessarily the mean"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003180 ; owl:annotatedTarget "The median of this attribute"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003181 ; owl:annotatedTarget "Combination of two or more dissociation methods that are known by a special term."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003182 ; owl:annotatedTarget "Dissociation process combining electron-transfer dissociation (ETD) and collision-induced dissociation (CID)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003183 ; owl:annotatedTarget "Waters oa-ToF based Synapt XS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003184 ; owl:annotatedTarget "Waters oa-ToF based SELECT SERIES Cyclic IMS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000382 ; owl:annotatedTarget "Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003185 ; owl:annotatedTarget "Waters oa-ToF based SELECT SERIES MRT."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003186 ; owl:annotatedTarget "Version number of the [PSI] library format specification"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003187 ; owl:annotatedTarget "Short identifier for the library for easy reference, preferably but not necessarily globally unique"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003188 ; owl:annotatedTarget "A short name identifying the library to potential users. The same name may refer to multiple versions of the same continually updated library."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003189 ; owl:annotatedTarget "Extended free-text description of the library"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000383 ; owl:annotatedTarget "The formation of a neutral when a negative ion in a discrete state with an energy greater than the detachment threshold loses an electron spontaneously without further interaction with an energy source."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003190 ; owl:annotatedTarget "Version number of the library, usually refering to a certain release of a continually updated library "^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003191 ; owl:annotatedTarget "URI or URL that uniquely identifies the library"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003192 ; owl:annotatedTarget "A spectrum deliberately introduced into a spectral library that necessarily produces incorrect identifications when matched, for the purpose of error control in spectral library searching"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003193 ; owl:annotatedTarget "A decoy spectrum generated from a real spectrum, by shuffling the amino acid sequence of the identification of the real spectrum, followed by re-positioning annotated peaks to match the shuffled sequence."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003194 ; owl:annotatedTarget "A decoy spectrum generated from a real spectrum, by changing the precursor m/z value of the real spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003195 ; owl:annotatedTarget "A decoy spectrum that is either a real spectrum of an unnatural peptidoform (e.g. a synthetic peptide that cannot be found in nature), or an artificial spectrum predicted for such unnatural peptidoform"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003196 ; owl:annotatedTarget "A decoy spectrum that is a real spectrum of a naturally occuring peptidoform of an unrelated species that should not be found in the sample"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003197 ; owl:annotatedTarget "URI of the license controlling use of the library (e.g. https://creativecommons.org/publicdomain/zero/1.0/)"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000384 ; owl:annotatedTarget "The formation of an ion when an atom or molecule in a discrete state with an energy greater than the ionization threshold loses an electron spontaneously without further interaction with an energy source."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003198 ; owl:annotatedTarget "Notice of statutorily prescribed form that informs users of the underlying claim to copyright ownership in a published work"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003199 ; owl:annotatedTarget "Extended free-text description of the difference from the previous version"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003200 ; owl:annotatedTarget "Version number of the software package used for library creation"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003201 ; owl:annotatedTarget "Abstract term containing several different types of provenance information"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003202 ; owl:annotatedTarget "A suite of software tools for creating and searching MS/MS peptide spectrum libraries, developed at the University of Washington"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003203 ; owl:annotatedTarget "Spectrum data file from which (at least) a subset of spectra were extracted from. Should use USI notation mzspec:PXDxxxx:msRunName if possible, or a URI if USI notation is not possible."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000385 ; owl:annotatedTarget "The interaction of an ion with an atom or molecule in which the charge on the ion is transferred to the neutral without the dissociation of either. Synonymous with charge transfer ionization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003204 ; owl:annotatedTarget "Identification file where (at least) a subset of identifications were extracted from. Should use a URI if possible"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003205 ; owl:annotatedTarget "Source library URI which(at least) a subset of spectra were extracted from."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003206 ; owl:annotatedTarget """String of logging information generated when the library was constructed from its constituent files. Multiple lines should be separated with escaped """^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003207 ; owl:annotatedTarget "Library creation software"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003208 ; owl:annotatedTarget "The measured or inferred m/z (as reported by the mass spectrometer acquisition software or post-processing software) of the monoisotopic peak of the precursor ion based on the MSn-1 spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000386 ; owl:annotatedTarget "The reaction of a neutral molecule with an internally excited molecule to form an ion. Note that this term is not synonymous with chemical ionization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003209 ; owl:annotatedTarget "The measured monoisotopic m/z (as reported by the mass spectrometer acquisition software or post-processing software) minus the theoretical monoisotopic m/z of the analyte assigned to the spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003210 ; owl:annotatedTarget "The measured average m/z (as reported by the mass spectrometer acquisition software or post-processing software) minus the theoretical average m/z of the analyte assigned to the spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003211 ; owl:annotatedTarget "A set of spectrum-related attributes that is shared by a subset of spectra within the same spectral library"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000387 ; owl:annotatedTarget "The formation of ions by laser desorption ionization of a sample deposited on a porous silicon surface."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003212 ; owl:annotatedTarget "A name to refer to a library attribute set"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003213 ; owl:annotatedTarget "Specific aspect of a mass spectrometer method by which mass ranges are selected and possibly dissociated."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003214 ; owl:annotatedTarget "Specific aspect of a mass spectrometer method by which mass ranges are selected and possibly dissociated."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003215 ; owl:annotatedTarget "Mass spectrometer data acquisition method wherein mass selection for fragmentation is configured according to a pre-determined program, rather than based on any detected precursor ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003216 ; owl:annotatedTarget "Mass spectrometer data acquisition method wherein all precursor ions of which the instrument is capable are fragmented at once.."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003217 ; owl:annotatedTarget "Mass spectrometer data acquisition method wherein ????."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003218 ; owl:annotatedTarget "Mass spectrometer data acquisition method wherein a series of limited mass range fragmentation selection windows are preconfigured."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000388 ; owl:annotatedTarget "The reaction of a gas-phase molecule that results in its decomposition to form products, one of which is an ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003219 ; owl:annotatedTarget "Mass spectrometer data acquisition method wherein precursor ions are separated by their ion mobility properties prior to measurement."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003220 ; owl:annotatedTarget "Data processing action of merging of the measurements of potentially multiple adducts into a single representation that is independent of the small ion that adds charge to a larger molecule."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003221 ; owl:annotatedTarget "Mass spectrometer data acquisition method wherein MSn spectra are triggered based on the m/z of precursor ions detected in the same run."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003222 ; owl:annotatedTarget "Data processing action of merging multiple ion peaks acquired at different ion mobility steps into a single mass spectrum representing a single analyte."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003224 ; owl:annotatedTarget "Data independent mass spectrometer acquisition method wherein a preconfigured sequence of mass ranges are fragmented. Examples of such an approach include SWATH-MS, FT-ARM, HRM, and PAcIFIC."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003225 ; owl:annotatedTarget "Data independent mass spectrometer acquisition method wherein a preconfigured sequence of mass ranges are fragmented after being separated by ion mobility. An example of such an approach is Bruker diaPASEF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003226 ; owl:annotatedTarget "Data independent mass spectrometer acquisition method wherein the full mass range is fragmented after being separated by ion mobility. Examples of such an approach include HDMS^E and IMS-AIF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003227 ; owl:annotatedTarget "Data independent mass spectrometer acquisition method wherein the full mass range is fragmented. Examples of such an approach include MS^E, AIF, and bbCID."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003228 ; owl:annotatedTarget "Data independent mass spectrometer acquisition method wherein ???. An example of such an approach is Waters SONAR."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003229 ; owl:annotatedTarget "Bruker Daltonics' timsTOF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000389 ; owl:annotatedTarget "The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003230 ; owl:annotatedTarget "Bruker Daltonics' timsTOF Pro 2."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003231 ; owl:annotatedTarget "Bruker Daltonics' timsTOF SCP."^^xsd:string . [] oboInOwl:hasDbXref "https://peakforest.org/"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003232 ; owl:annotatedTarget "comprehensive infrastructure to organize, curate and share a multi- instrument spectral library for metabolomics data annotation developed and distributed by the French National infrastructure in metabolomics and fluxomics (MetaboHUB)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003234 ; owl:annotatedTarget "An attribute that describes information about an entry in a spectral library"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003235 ; owl:annotatedTarget "The ionization of analytes from a piece of paper by applying a solvent and voltage."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003237 ; owl:annotatedTarget "An ordinal number uniquely identifying a spectrum in a library. Library spectrum keys should start at 1. Library spectrum keys SHOULD not change if entries are re-ordered or removed from a library."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003238 ; owl:annotatedTarget "A set of analyte-related attributes that is shared by a subset of spectra within the same spectral library"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003239 ; owl:annotatedTarget "A set of interpretation-related attributes that is shared by a subset of spectra within the same spectral library"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000390 ; owl:annotatedTarget "OBSOLETE The removal of solvent molecules clustered around a gas-phase ion by means of heating and/or collisions with gas molecules."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003240 ; owl:annotatedTarget "A mathematical transformation applied to peak intensities, for example, as a way to modify the weight put on each peak when computing spectral match scores"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003241 ; owl:annotatedTarget "A mathematical transformation applied to peak intensities, in which peak intensities are replaced by their square roots"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003242 ; owl:annotatedTarget "A mathematical transformation applied to peak intensities, in which peak intensities are replaced by their ranks"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003243 ; owl:annotatedTarget "The theoretical mass of the adduct ion (e.g. for a singly-charged protonated peptide ion, this value would be the neutral peptide molecule’s mass plus the mass of a proton)"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003244 ; owl:annotatedTarget "Accession number (e.g. in PeptideAtlas) of the peptide sequence"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003245 ; owl:annotatedTarget "Thermo Scientific Q Exactive UHMR (Ultra High Mass Range) Hybrid Quadrupole Orbitrap MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003246 ; owl:annotatedTarget "Multiphoton ionization where the reactant ion dissociates as a result of the absorption of multiple UV photons."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1016/j.jasms.2005.01.015"^^xsd:string, "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003247 ; owl:annotatedTarget "A process to fragment ions in a mass spectrometer by inducing fragmentation of anions (e.g. peptides or proteins) by transferring electrons to a radical-cation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000391 ; owl:annotatedTarget "OBSOLETE The reaction of a molecule to form both a positive ion and negative ion fragment among the products."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1002/mas.20048"^^xsd:string, "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003248 ; owl:annotatedTarget "Process to transfer a proton from a hydronium ion (H3O+) to neutral analyte, leading to a protonated analyte, which typically does not lead to fragmentation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003249 ; owl:annotatedTarget "Process to transfer one or more protons from a multiply charged cation (peptide or protein ion) to a proton acceptor anion or neutral basic compound, thereby reducing the charge of the original analyte."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003250 ; owl:annotatedTarget "The number of peptidoforms that pass the threshold to be considered identified with sufficient confidence."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003251 ; owl:annotatedTarget "The number of spectra that pass the threshold to be considered identified with sufficient confidence."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003252 ; owl:annotatedTarget "Waters Corporation Xevo G2-XS QTof quadrupole time-of-flight mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PMID:31768060"^^xsd:string, "https://github.com/vdemichev/DiaNN"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003253 ; owl:annotatedTarget "A universal software for data-independent acquisition (DIA) proteomics data processing"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003254 ; owl:annotatedTarget "An attribute of a peak in a mass spectrum other than its m/z, intensity, and annotation. "^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003255 ; owl:annotatedTarget "For a de-charged spectrum, the original charge state of the ion observed in a mass spectrum determined by charge deconvolution. "^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003256 ; owl:annotatedTarget "Non-inherent characteristic attributed to a peptidoform"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003257 ; owl:annotatedTarget "A link from one spectrum to another spectrum of interest "^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003258 ; owl:annotatedTarget "A cross reference to another spectrum that has some relationship with this one, but is not necessarily spectrally similar. "^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003259 ; owl:annotatedTarget "A list of cross references to a related spectrum in the same library, in the form of the library spectrum key. "^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003260 ; owl:annotatedTarget "A cross reference to a related spectrum in the form of a PSI Universal Spectrum Identifier"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000392 ; owl:annotatedTarget "The ratio of the number of ions formed to the number of electrons, molecules or photons used."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003261 ; owl:annotatedTarget "A free-text string describing the related spectrum and/or its relationship to this spectrum"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003262 ; owl:annotatedTarget "A cross reference to another spectrum that has high spectral similarity with this one, usually assumed to originate from the same analyte ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003263 ; owl:annotatedTarget "A list of cross references to a similar spectrum in the same library, in the form of the library spectrum key. "^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003264 ; owl:annotatedTarget "A cross reference to a similar spectrum in the form of a PSI Universal Spectrum Identifier"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003265 ; owl:annotatedTarget "A group of spectra that are spectrally similar to each other"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000393 ; owl:annotatedTarget "The formation of gas-phase ions by the interaction of a pulsed laser with a solid or liquid material."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003266 ; owl:annotatedTarget "A non-inherent characteristic of a spectrum cluster"^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003267 ; owl:annotatedTarget "An ordinal number uniquely identifying a spectrum cluster. It should start with 1."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003268 ; owl:annotatedTarget "A list of integers corresponding to the library spectrum keys of the members of this cluster. These members must be in the same library."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003269 ; owl:annotatedTarget "A member of this cluster external to the library, specified using a PSI Universal Spectrum Identifier "^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1003270 ; owl:annotatedTarget "A string describing the peptidoform ion using the PSI ProForma notation, which should include the charge state, and optionally the adduct type. "^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000000 ; owl:annotatedTarget "PSI Quality Control controlled vocabulary term."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000395 ; owl:annotatedTarget "The ionization of any species by the interaction of a focused beam of ions with a sample that is dissolved in a solvent matrix. See also fast atom bombardment and secondary ionization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000001 ; owl:annotatedTarget "Parent term for QC metrics, each metric MUST have this as an ancestor in its is_a relations."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000002 ; owl:annotatedTarget "The QC metric type describes what type the corresponding metric is. Possible types are single value, n-tuple, table, or matrix."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000003 ; owl:annotatedTarget "Metrics consisting of a single value. The value must have a unit (e.g. UO:0000221 ! dalton or UO:0000187 ! percent), and optionally a type (e.g. STATO:0000574 ! median or MS:1002354 ! PSM-level q-value)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000004 ; owl:annotatedTarget "Metrics consisting of multiple values, with the number of values implicitly specified by length of the JSON array (e.g. length 4 for quartiles). All values must be given a unit (e.g. UO:0000221 ! dalton or UO:0000187 ! percent), and optionally a type (e.g. STATO:0000574 ! median or MS:1002354 ! PSM-level q-value). All values in the tuple must have the same unit and type (if applicable)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000005 ; owl:annotatedTarget "Metrics consisting of a table or data frame. The values of the table may have different types in each column (in contrast to a matrix). Each column must have a unit (identical for all entries of this column) and may have a value type (e.g. STATO:0000574 ! median or MS:1002354 ! PSM-level q-value)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000006 ; owl:annotatedTarget "A matrix is a rectangular array of values of the same type (in contrast to a table). All values must be given a unit (e.g. UO:0000221 ! dalton or UO:0000187 ! percent), and optionally a type (e.g. STATO:0000574 ! median or MS:1002354 ! PSM-level q-value). All values in the matrix must have the same unit and type (if applicable)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000007 ; owl:annotatedTarget "Categorization of the QC metric."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000396 ; owl:annotatedTarget "A semi-permeable membrane separator that permits the passage of gas sample directly to the mass spectrometer ion source."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000008 ; owl:annotatedTarget "QC metric based on identification results."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000009 ; owl:annotatedTarget "QC metric not based on identification results."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000010 ; owl:annotatedTarget "QC metric based on quantification results."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000012 ; owl:annotatedTarget "QC metric calculated from a single run (e.g. one .raw file)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000013 ; owl:annotatedTarget "QC metric calculated from multiple runs (e.g. multiple .raw files)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000014 ; owl:annotatedTarget "QC metric calculated from a single spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000015 ; owl:annotatedTarget "QC metric calculated from multiple spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000016 ; owl:annotatedTarget "QC metric related to retention time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000017 ; owl:annotatedTarget "QC metric related to a chromatogram."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000018 ; owl:annotatedTarget "QC metric related to an extracted ion chromatogram."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000397 ; owl:annotatedTarget "Electrospray ionization at a solvent flow rate of 300-800 nL/min where the flow is a result of a mechanical pump. See nanoelectrospray."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000019 ; owl:annotatedTarget "QC metric related to the mass spectrometry acquisition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000020 ; owl:annotatedTarget "QC metric related to events in the ion source."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000021 ; owl:annotatedTarget "QC metric based on MS1 events."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000022 ; owl:annotatedTarget "QC metric based on MS2 events."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000023 ; owl:annotatedTarget "QC metric related to the sample preparation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000024 ; owl:annotatedTarget "QC metric related to measurements of the ambient environment, such as the laboratory."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000398 ; owl:annotatedTarget "Electrospray ionization at a flow rate less than ~25 nL/min. Nanoelectrospray is synonymous with nanospray. The flow is dependent on the potenial on the tip of the electrospray needle and/or a gas presure to push the sample through the needle. See also electrospray ionization and microelectrospray."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000050 ; owl:annotatedTarget "The number of XIC that account for the top half of all XIC-FWHM divided by the number of all XIC."^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:MS_4000050 ; owl:annotatedTarget "XIC-WideFrac"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000051 ; owl:annotatedTarget "The first to n-th quantile of peak widths for XICs. A metric's value triplet represents the related QuaMeter metrics of of XIC-FWHM-Q1,Q2,Q3."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000399 ; owl:annotatedTarget "Ionization that occurs through the interaction of two or more neutral gaseous species, at least one of which is internally excited."^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000051 ; owl:annotatedTarget "XIC-FWHM-Q1"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000051 ; owl:annotatedTarget "XIC-FWHM-Q2"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000051 ; owl:annotatedTarget "XIC-FWHM-Q3"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000052 ; owl:annotatedTarget "The log ratio of successive XIC height quartiles. The metric's value triplet represents the log ratios of XIC-height-Q2 to XIC-height-Q1, XIC-height-Q3 to XIC-height-Q2, XIC-height max to XIC-height-Q3."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000400 ; owl:annotatedTarget "The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization."^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000052 ; owl:annotatedTarget "XIC-Height-Q2"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000052 ; owl:annotatedTarget "XIC-Height-Q3"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000052 ; owl:annotatedTarget "XIC-Height-Q4"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000053 ; owl:annotatedTarget "The retention time duration of the chromatography in seconds."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000401 ; owl:annotatedTarget "OBSOLETE An electronic state capable of undergoing auto-Ionization."^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000053 ; owl:annotatedTarget "RT-Duration"^^xsd:string . [] oboInOwl:hasDbXref "PSI:QC"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000054 ; owl:annotatedTarget "The interval when the respective quarter of the TIC accumulates divided by retention time duration."^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000054 ; owl:annotatedTarget "RT-TIC-Q1"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000054 ; owl:annotatedTarget "RT-TIC-Q2"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000402 ; owl:annotatedTarget "The process in which ions are ejected from a sample surface as a result of bombardment by a primary beam of atoms or ions."^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000054 ; owl:annotatedTarget "RT-TIC-Q3"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000054 ; owl:annotatedTarget "RT-TIC-Q4"^^xsd:string . [] oboInOwl:hasDbXref "PSI:QC"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000055 ; owl:annotatedTarget "The interval used for acquisition of the first, second, third, and fourth quarter of all MS1 events divided by retention time duration."^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000055 ; owl:annotatedTarget "RT-MS-Q1"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000403 ; owl:annotatedTarget "The formation of gas-phase ions without extensive fragmentation."^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000055 ; owl:annotatedTarget "RT-MS-Q2"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000055 ; owl:annotatedTarget "RT-MS-Q3"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000055 ; owl:annotatedTarget "RT-MS-Q4"^^xsd:string . [] oboInOwl:hasDbXref "PSI:QC"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000056 ; owl:annotatedTarget "The interval used for acquisition of the first, second, third, and fourth quarter of all MS2 events divided by retention time duration."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000404 ; owl:annotatedTarget "The formation of ions from a solid material by an intermittent electrical discharge."^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000056 ; owl:annotatedTarget "RT-MSMS-Q1"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000056 ; owl:annotatedTarget "RT-MSMS-Q2"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000056 ; owl:annotatedTarget "RT-MSMS-Q3"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000056 ; owl:annotatedTarget "RT-MSMS-Q4"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000405 ; owl:annotatedTarget "The formation of gas-phase ions from molecules that are deposited on a particular surface substrate that is irradiated with a pulsed laser. See also matrix-assisted laser desorption ionization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000057 ; owl:annotatedTarget "The log ratios of successive TIC-change quartiles. The TIC changes are the list of MS1 total ion current (TIC) value changes from one to the next scan, produced when each MS1 TIC is subtracted from the preceding MS1 TIC. The metric's value triplet represents the log ratio of the TIC-change Q2 to Q1, Q3 to Q2, TIC-change-max to Q3"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000057 ; owl:annotatedTarget "MS1-TIC-Change-Q2"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000057 ; owl:annotatedTarget "MS1-TIC-Change-Q3"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000057 ; owl:annotatedTarget "MS1-TIC-Change-Q4"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000023 ; owl:annotatedTarget "OBSOLETE The total width (i.e. not half for plus-or-minus) of the gate applied around a selected precursor ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000406 ; owl:annotatedTarget "The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000058 ; owl:annotatedTarget "The log ratios of successive TIC quartiles. The metric's value triplet represents the log ratios of TIC-Q2 to TIC-Q1, TIC-Q3 to TIC-Q2, TIC-max to TIC-Q3."^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000058 ; owl:annotatedTarget "MS1-TIC-Q2"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000058 ; owl:annotatedTarget "MS1-TIC-Q3"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000058 ; owl:annotatedTarget "MS1-TIC-Q4"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000059 ; owl:annotatedTarget "The number of MS1 events in the run."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000407 ; owl:annotatedTarget "The ionization of a neutral species through contact with a high temperature surface."^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:MS_4000059 ; owl:annotatedTarget "MS1-Count"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000060 ; owl:annotatedTarget "The number of MS2 events in the run."^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:MS_4000060 ; owl:annotatedTarget "MS2-Count"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000408 ; owl:annotatedTarget "A process in which an electron is removed from or added to a molecule without a change in the positions of the atoms. The resulting ion is typically in an excited vibrational state."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000061 ; owl:annotatedTarget "The first to n-th quantile of MS1 peak density (scan peak counts). A value triplet represents the original QuaMeter metrics, the quartiles of MS1 density. The number of values in the tuple implies the quantile mode."^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000061 ; owl:annotatedTarget "MS1-Density-Q1"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000061 ; owl:annotatedTarget "MS1-Density-Q2"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000061 ; owl:annotatedTarget "MS1-Density-Q3"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000409 ; owl:annotatedTarget "OBSOLETE The reaction of an ion with a neutral species in which the reactants combine to form a single ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000062 ; owl:annotatedTarget "The first to n-th quantile of MS2 peak density (scan peak counts). A value triplet represents the original QuaMeter metrics, the quartiles of MS2 density. The number of values in the tuple implies the quantile mode."^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000062 ; owl:annotatedTarget "MS2-Density-Q1"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000062 ; owl:annotatedTarget "MS2-Density-Q2"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000062 ; owl:annotatedTarget "MS2-Density-Q3"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000410 ; owl:annotatedTarget "OBSOLETE A homolytic cleavage where the bond fission occurs between at the atom adjacent to the atom at the apparent charge site and an atom removed from the aparent charge site by two bonds."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000063 ; owl:annotatedTarget "The fraction of MS/MS precursors of the corresponding charge. The fractions [0,1] are given in the 'Fraction' column, corresponding charges in the 'Charge state' column. The highest charge state is to be interpreted as that charge state or higher."^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasNarrowSynonym ; owl:annotatedSource obo:MS_4000063 ; owl:annotatedTarget "MS2-PrecZ-1"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasNarrowSynonym ; owl:annotatedSource obo:MS_4000063 ; owl:annotatedTarget "MS2-PrecZ-2"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasNarrowSynonym ; owl:annotatedSource obo:MS_4000063 ; owl:annotatedTarget "MS2-PrecZ-3"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasNarrowSynonym ; owl:annotatedSource obo:MS_4000063 ; owl:annotatedTarget "MS2-PrecZ-4"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasNarrowSynonym ; owl:annotatedSource obo:MS_4000063 ; owl:annotatedTarget "MS2-PrecZ-5"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000411 ; owl:annotatedTarget "OBSOLETE A homolytic cleavage where the bond fission occurs between at an atom removed from the apparent charge site atom by two bonds and an atom adjacent to that atom and removed from the aparent charge site by three bonds."^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasNarrowSynonym ; owl:annotatedSource obo:MS_4000063 ; owl:annotatedTarget "MS2-PrecZ-more"^^xsd:string . [] oboInOwl:hasDbXref "PMID:19837981"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000063 ; owl:annotatedTarget "IS-3A"^^xsd:string . [] oboInOwl:hasDbXref "PMID:19837981"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000063 ; owl:annotatedTarget "IS-3B"^^xsd:string . [] oboInOwl:hasDbXref "PMID:19837981"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000063 ; owl:annotatedTarget "IS-3C"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000064 ; owl:annotatedTarget "The fractions of inferred charge state of MS/MS precursors. The fractions [0,1] are given in the 'Fraction' column, corresponding charges in the 'Charge state' column. Charge 0 represents unknown charge states."^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000064 ; owl:annotatedTarget "MS2-PrecZ-likely-1"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedSource obo:MS_4000064 ; owl:annotatedTarget "MS2-PrecZ-likely-multi"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000065 ; owl:annotatedTarget "Fastest frequency for MS level 1 collection"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:MS_4000065 ; owl:annotatedTarget "MS1-Freq-Max"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000412 ; owl:annotatedTarget "An inert gas used for collisional deactivation of internally excited ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000066 ; owl:annotatedTarget "Fastest frequency for MS level 2 collection"^^xsd:string . [] oboInOwl:hasDbXref "PMID:24494671"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:MS_4000066 ; owl:annotatedTarget "MS2-Freq-Max"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000413 ; owl:annotatedTarget "OBSOLETE Fragmentation of an odd electron ion in which the cleaved bond is adjacent to the apparent charge site. Synonymous with charge mediated fragmentation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000067 ; owl:annotatedTarget "The duration of the mass spectrometry acquisition (as measured by the time between the last scan and first scan) in seconds."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000414 ; owl:annotatedTarget "OBSOLETE Reaction of an ion with a neutral species in which the charge on the product ion is reversed in sign with respect to the reactant ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000068 ; owl:annotatedTarget "The minimal proportion of peaks needed to account for at least 50% of the total ion current in each individual spectrum considered, recorded in a mandatory fraction column. Either USI or native spectrum identifier columns must be present as well."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000069 ; owl:annotatedTarget "Upper and lower limit of m/z precursor values at which MSn spectra are recorded."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000002 ; owl:annotatedTarget "A reference string relevant to the sample under study."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000415 ; owl:annotatedTarget "OBSOLETE The reaction of an ion with a neutral species with a resulting change in the magnitude or sign of the charge on the reactant ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000070 ; owl:annotatedTarget "Upper and lower limit of retention time at which spectra are recorded."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000071 ; owl:annotatedTarget "The number of chromatograms recorded for the run."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000416 ; owl:annotatedTarget "OBSOLETE Reaction of a positive ion with a neutral species in which the positive charge on the product ion is greater than that on the reactant ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000072 ; owl:annotatedTarget "Observed mass accuracy in ppm, calculated by 1E6 x (observed m/z - theoretical m/z)/theoretical m/z of a selected and identified ion in a mass spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000073 ; owl:annotatedTarget "A QC metric based on a QC sample of known content."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000074 ; owl:annotatedTarget "A QC metric based on a QC sample of known and high complexity content."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000075 ; owl:annotatedTarget "A QC metric based on a QC sample of known and low complexity content."^^xsd:string . [] oboInOwl:hasDbXref "PMID:23088386"^^xsd:string, "PMID:29324744"^^xsd:string, "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000076 ; owl:annotatedTarget "A QC metric based on the results of a QC2 sample measurement. A QC2 sample is made from Pierce HeLa protein digest standard, see Pichler et al. Chiva et al. for details on QC sample design."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000417 ; owl:annotatedTarget "OBSOLETE The reaction of an ion with a neutral species in which some or all of the charge of the reactant ion is transferred to the neutral species."^^xsd:string . [] oboInOwl:hasDbXref "PMID:23088386"^^xsd:string, "PMID:29324744"^^xsd:string, "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000077 ; owl:annotatedTarget "A QC metric based on the results of a QC1 sample measurement. A QC1 sample is made from trypsin-digested BSA MS Standard (CAM modified), see Pichler et al. Chiva et al. for details on QC sample design)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000078 ; owl:annotatedTarget "Observed mass accuracy for the peptides of a QC2 sample measurement. The table should contain the peptides as described in the QC2 sample metric term, missing are interpreted as not detected."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000418 ; owl:annotatedTarget "OBSOLETE The reaction of an ion with a neutral species in which the translational energy of the collision is converted into internal energy of the ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000079 ; owl:annotatedTarget "Observed intensities for the peptides of a QC2 sample measurement within 5 ppm and +/- 240 s RT tolerance. Different metrics of observed intensities are possible, at least one must be present. The table should contain the peptides as defined in the parent QC2 sample metric term, missing are interpreted as not detected."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000080 ; owl:annotatedTarget "QC terms associated but not directly metrics themselves."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000081 ; owl:annotatedTarget "Data from the first principal component of a PCA."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000082 ; owl:annotatedTarget "Data from the second principal component of a PCA."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000083 ; owl:annotatedTarget "Data from the third principal component of a PCA."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000084 ; owl:annotatedTarget "Data from the fourth principal component of a PCA."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000085 ; owl:annotatedTarget "Data from the fifth principal component of a PCA."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000086 ; owl:annotatedTarget "Used to refer to data elements of input sections in mzQC, either inputFile names or metadata labels."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000419 ; owl:annotatedTarget "An inert gas used for collisional excitation. The term target gas is not recommended."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000087 ; owl:annotatedTarget "Used to supply alternative labels for plotting figures."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000088 ; owl:annotatedTarget "Used to supply batch label information with any string value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000089 ; owl:annotatedTarget "Used to supply injection sequence information with consecutive whole numbers."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000420 ; owl:annotatedTarget "OBSOLETE Fragmentation of a molecule or ion in which both electrons forming the single bond that is broken remain on one of the atoms that were originally bonded. This term is synonymous with heterolysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; doku:id "maxquant:table:directory&s[]=output"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000090 ; owl:annotatedTarget "A table with the PCA results of MaxQuant's protein group raw intensities."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000421 ; owl:annotatedTarget "OBSOLETE Collision-induced dissociation process wherein the projectile ion has laboratory-frame translational energy higher than 1 keV."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; doku:id "maxquant:table:directory&s[]=output"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000091 ; owl:annotatedTarget "A table with the PCA results of MaxQuant's protein group lfq intensities."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000422 ; owl:annotatedTarget "A collision-induced dissociation process that occurs in a beam-type collision cell."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000092 ; owl:annotatedTarget "A table with the PCA results of identified MS1 feature areas."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000423 ; owl:annotatedTarget "OBSOLETE Fragmentation of an odd electron ion that results from one of a pair of electrons that form a bond between two atoms moving to form a pair with the odd electron on the atom at the apparent charge site. Fragmentation results in the formation of an even electron ion and a radical. This reaction involves the movement of a single electron and is symbolized by a single-barbed arrow. Synonymous with Homolysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000024 ; owl:annotatedTarget "Final MS level achieved when performing PFF with the ion trap (e.g. MS E10)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000424 ; owl:annotatedTarget "OBSOLETE Exchange of hydrogen atoms with deuterium atoms in a molecule or pre-formed ion in solution prior to introduction into a mass spectrometer, or by reaction of an ion with a deuterated collision gas inside a mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000093 ; owl:annotatedTarget "A table with the PCA results of unidentified but multiple-run-matched MS1 feature areas."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000425 ; owl:annotatedTarget "OBSOLETE A plot of the relative abundance of a beam or other collection of ions as a function their loss of translational energy in reactions with neutral species."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_4000094 ; owl:annotatedTarget "A table with the PCA results of identified MS1 feature areas after batch-correction."^^xsd:string . [] obo2:NCIT_C16847 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:NCIT_C16847 ; owl:annotatedTarget "A practiced and regimented skill or series of actions."^^xsd:string . [] obo2:NCIT_C19044 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:NCIT_C19044 ; owl:annotatedTarget "A method of analyzing or representing statistical data; a procedure for calculating a statistic."^^xsd:string . [] obo2:NCIT_P378 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:NCIT_C20181 ; owl:annotatedTarget "An organizational header for concepts representing mostly abstract entities."^^xsd:string . [] obo2:NCIT_P383 "PT"^^xsd:string ; obo2:NCIT_P384 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:NCIT_C20181 ; owl:annotatedTarget "Conceptual Entity"^^xsd:string . [] obo2:NCIT_P378 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:NCIT_C20189 ; owl:annotatedTarget "A distinguishing quality or prominent aspect of a person, object, action, process, or substance."^^xsd:string . [] obo2:NCIT_P383 "PT"^^xsd:string ; obo2:NCIT_P384 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:NCIT_C20189 ; owl:annotatedTarget "Property or Attribute"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000426 ; owl:annotatedTarget "OBSOLETE The reaction of an ion with a neutral species in which one or more electrons are removed from either the ion or neutral."^^xsd:string . [] obo2:NCIT_P383 "PT"^^xsd:string ; obo2:NCIT_P384 "NICHD"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:NCIT_C20189 ; owl:annotatedTarget "Property or Attribute"^^xsd:string . [] obo2:NCIT_P378 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:NCIT_C21514 ; owl:annotatedTarget "Terms used to indicate units of time or other terms associated with time."^^xsd:string . [] obo2:NCIT_P383 "PT"^^xsd:string ; obo2:NCIT_P384 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:NCIT_C21514 ; owl:annotatedTarget "Temporal Qualifier"^^xsd:string . [] obo2:NCIT_P383 "PT"^^xsd:string ; obo2:NCIT_P384 "NICHD"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:NCIT_C21514 ; owl:annotatedTarget "Temporal Qualifier"^^xsd:string . [] obo2:NCIT_P378 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:NCIT_C25330 ; owl:annotatedTarget "The period of time during which something continues."^^xsd:string . [] obo2:NCIT_P378 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:NCIT_C25404 ; owl:annotatedTarget "A thing done."^^xsd:string . [] obo2:NCIT_P383 "PT"^^xsd:string ; obo2:NCIT_P384 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:NCIT_C25404 ; owl:annotatedTarget "Action"^^xsd:string . [] obo2:NCIT_P383 "SY"^^xsd:string ; obo2:NCIT_P384 "caDSR"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:NCIT_C25404 ; owl:annotatedTarget "Action"^^xsd:string . [] obo2:NCIT_P383 "SY"^^xsd:string ; obo2:NCIT_P384 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:NCIT_C25404 ; owl:annotatedTarget "Generic Action"^^xsd:string . [] obo2:NCIT_P378 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:NCIT_C25447 ; owl:annotatedTarget "The distinguishing qualities or prominent aspect of a person, object, action, process, or substance."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000427 ; owl:annotatedTarget "OBSOLETE The reaction of an ion with a neutral molecule. The term ion-molecule reaction is not recommended because the hyphen suggests a single species that is that is both an ion and a molecule."^^xsd:string . [] obo2:NCIT_P383 "PT"^^xsd:string ; obo2:NCIT_P384 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:NCIT_C25447 ; owl:annotatedTarget "Characteristic"^^xsd:string . [] obo2:NCIT_P383 "PT"^^xsd:string ; obo2:NCIT_P384 "NICHD"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:NCIT_C25447 ; owl:annotatedTarget "Characteristic"^^xsd:string . [] obo2:NCIT_P383 "SY"^^xsd:string ; obo2:NCIT_P384 "caDSR"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:NCIT_C25447 ; owl:annotatedTarget "Characteristic"^^xsd:string . [] obo2:NCIT_P383 "SY"^^xsd:string ; obo2:NCIT_P384 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:NCIT_C25447 ; owl:annotatedTarget "Characteristics"^^xsd:string . [] obo2:NCIT_P383 "SY"^^xsd:string ; obo2:NCIT_P384 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:NCIT_C25447 ; owl:annotatedTarget "Feature"^^xsd:string . [] obo2:NCIT_P383 "SY"^^xsd:string ; obo2:NCIT_P384 "caDSR"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:NCIT_C25447 ; owl:annotatedTarget "Features"^^xsd:string . [] obo2:NCIT_P378 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:NCIT_C41009 ; owl:annotatedTarget "A term that helps define and render a concept unique."^^xsd:string . [] obo2:NCIT_P383 "SY"^^xsd:string ; obo2:NCIT_P384 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:NCIT_C41009 ; owl:annotatedTarget "Modifier"^^xsd:string . [] obo2:NCIT_P383 "PT"^^xsd:string ; obo2:NCIT_P384 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:NCIT_C41009 ; owl:annotatedTarget "Qualifier"^^xsd:string . [] obo2:NCIT_P378 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:NCIT_C43431 ; owl:annotatedTarget "An active process; excludes processes and mechanisms which fulfill biological functions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000428 ; owl:annotatedTarget "OBSOLETE A particular type of transition state that lies between precursor and product ions on the reaction coordinate of some ion reactions."^^xsd:string . [] obo2:NCIT_P383 "PT"^^xsd:string ; obo2:NCIT_P384 "BRIDG 3.0.3"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:NCIT_C43431 ; owl:annotatedTarget "Activity"^^xsd:string . [] obo2:NCIT_P383 "PT"^^xsd:string ; obo2:NCIT_P384 "BRIDG 5.3"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:NCIT_C43431 ; owl:annotatedTarget "Activity"^^xsd:string . [] obo2:NCIT_P383 "PT"^^xsd:string ; obo2:NCIT_P384 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:NCIT_C43431 ; owl:annotatedTarget "Activity"^^xsd:string . [] obo2:NCIT_P383 "SY"^^xsd:string ; obo2:NCIT_P384 "caDSR"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:NCIT_C43431 ; owl:annotatedTarget "Activity"^^xsd:string . [] obo2:NCIT_P383 "SY"^^xsd:string ; obo2:NCIT_P384 "caDSR"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedSource obo:NCIT_C43431 ; owl:annotatedTarget "General activity"^^xsd:string . [] obo2:NCIT_P378 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:NCIT_C45781 ; owl:annotatedTarget "The amount of something per unit size."^^xsd:string . [] obo2:NCIT_C60694 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:NCIT_C60694 ; owl:annotatedTarget "One of the axes representing the projection of varience resulting from principal component analysis."^^xsd:string . [] obo2:NCIT_P378 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:NCIT_C68811 ; owl:annotatedTarget "Span a region or interval of distance, space or time."^^xsd:string . [] obo2:NCIT_P378 "NCI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:NCIT_C79083 ; owl:annotatedTarget "An observation in a data set that is numerically distant from the rest of the data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000429 ; owl:annotatedTarget "OBSOLETE A process wherein a charged species interacts with a neutral reactant to produce either chemically different species or changes in the internal energy of one or both of the reactants."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0000001 ; owl:annotatedTarget "PSI Extended FASTA Format controlled vocabulary term."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0000002 ; owl:annotatedTarget "CV term that may appear in a PEFF file header section."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0000003 ; owl:annotatedTarget "CV term that may appear in a description line of a PEFF file individual sequence entry."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0000008 ; owl:annotatedTarget "PEFF keyword for the sequence database name."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0000009 ; owl:annotatedTarget "PEFF keyword for the sequence database prefix."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0000010 ; owl:annotatedTarget "PEFF keyword for the sequence database short description."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000430 ; owl:annotatedTarget "OBSOLETE In this reaction an association reaction is accompanied by the subsequent or simultaneous liberation of a different neutral species as a product."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0000011 ; owl:annotatedTarget "PEFF keyword for the specifying whether the sequence database is a decoy database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0000012 ; owl:annotatedTarget "PEFF keyword for the source of the database file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0000013 ; owl:annotatedTarget "PEFF keyword for the database version (release date) according to database provider."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0000014 ; owl:annotatedTarget "OBSOLETE PEFF keyword for the database date (release or file date of the source) according to database provider."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0000015 ; owl:annotatedTarget "PEFF keyword for the sumber of sequence entries in the database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0000016 ; owl:annotatedTarget "PEFF keyword for the description of the conversion from original format to this current one."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000431 ; owl:annotatedTarget "OBSOLETE An approach to determination of ion thermodynamic quantities by a bracketing procedure in which the relative probabilities of competing ion fragmentations are measured via the relative abundances of the reaction products. The extended kinetic method takes the associated entropy changes into account."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0000017 ; owl:annotatedTarget "PEFF keyword for the molecular type of the sequences."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0000018 ; owl:annotatedTarget "PEFF keyword for database specific keywords not included in the current controlled vocabulary."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0000019 ; owl:annotatedTarget "PEFF keyword for the specific values for a custom key."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0000020 ; owl:annotatedTarget "PEFF keyword for the short description of the PEFF file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000432 ; owl:annotatedTarget "OBSOLETE A collision between an ion and neutral species with translational energy approximately 1000 eV or lower."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0000021 ; owl:annotatedTarget "PEFF keyword for a general comment."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0000022 ; owl:annotatedTarget "PEFF keyword that when set to 'true' indicates that the database contains complete proteoforms."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0000023 ; owl:annotatedTarget "PEFF keyword for the short tag (abbreviation) and longer definition used to annotate a sequence annotation (such as variant or modification) in the OptionalTag location."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0000024 ; owl:annotatedTarget "PEFF keyword that when set to 'true' indicates that entries in the database have identifiers for each annotation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001001 ; owl:annotatedTarget "OBSOLETE Sequence database unique identifier."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000433 ; owl:annotatedTarget "A collision-induced dissociation process wherein the precursor ion has the translational energy lower than approximately 1000 eV. This process typically requires multiple collisions and the collisional excitation is cumulative."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001002 ; owl:annotatedTarget "PEFF keyword for the protein full name."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001003 ; owl:annotatedTarget "PEFF keyword for the NCBI taxonomy identifier."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001004 ; owl:annotatedTarget "PEFF keyword for the taxonomy name (latin or common name)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001005 ; owl:annotatedTarget "PEFF keyword for the gene name."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001006 ; owl:annotatedTarget "PEFF keyword for the sequence length."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000434 ; owl:annotatedTarget "OBSOLETE A dissociation reaction triggered by transfer of a hydrogen atom via a 6-member transition state to the formal radical/charge site from a carbon atom four atoms removed from the charge/radical site (the gamma-carbon); subsequent rearrangement of electron density leads to expulsion of an olefin molecule. This term was originally applied to ketone ions where the charge/radical site is the carbonyl oxygen, but it is now more widely applied."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001007 ; owl:annotatedTarget "PEFF keyword for the sequence version."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001008 ; owl:annotatedTarget "PEFF keyword for the entry version."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001009 ; owl:annotatedTarget "PEFF keyword for the Protein Evidence; A UniProtKB code 1-5."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001010 ; owl:annotatedTarget "PEFF keyword for information on how the full length original protein sequence can be processed into shorter components such as signal peptides and chains."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000435 ; owl:annotatedTarget "A process wherein the reactant ion is dissociated as a result of absorption of one or more photons."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001011 ; owl:annotatedTarget "OBSOLETE Sequence variation (substitution, insertion, deletion)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001012 ; owl:annotatedTarget "PEFF keyword for the modified residue with PSI-MOD identifier."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001013 ; owl:annotatedTarget "PEFF keyword for the modified residue without aPSI-MOD or UniMod identifier."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001014 ; owl:annotatedTarget "PEFF keyword for the Alternative Accession Code."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000436 ; owl:annotatedTarget "OBSOLETE Reaction of an ion with a neutral species in which some but not all of the ion charge is transferred to the neutral."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001015 ; owl:annotatedTarget "PEFF keyword for the sequence status. Complete or Fragment."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001016 ; owl:annotatedTarget "PEFF keyword for the entry associated comment."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001017 ; owl:annotatedTarget "PEFF keyword for the entry associated keyword(s)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001018 ; owl:annotatedTarget "PEFF keyword for the Gene Ontology code."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001019 ; owl:annotatedTarget "PEFF keyword for the cross-reference to an external resource."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000437 ; owl:annotatedTarget "OBSOLETE Chemical transformation involving an ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001020 ; owl:annotatedTarget "Portion of a newly synthesized protein that contributes to a final structure after other components such as signal peptides are removed."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001021 ; owl:annotatedTarget "Short peptide present at the N-terminus of a newly synthesized protein that is cleaved off and is not part of the final mature protein."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001022 ; owl:annotatedTarget "Short peptide present at the N-terminus of a newly synthesized protein that helps the protein through the membrane of its destination organelle."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000438 ; owl:annotatedTarget "OBSOLETE Collision in which the translational energy of the fast-moving collision partner is increased at the expense of internal energy of one or both collision partners."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001023 ; owl:annotatedTarget "PEFF keyword for the sequence conflict; a UniProtKB term."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001024 ; owl:annotatedTarget "PEFF keyword for the Sequence checksum in crc64."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001025 ; owl:annotatedTarget "PEFF keyword for the sequence range of a domain."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001026 ; owl:annotatedTarget "PEFF keyword for the UniProtKB specific Protein identifier ID; a UniProtKB term."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000439 ; owl:annotatedTarget "OBSOLETE A process wherein a reactant ion interacts with a surface to produce either chemically different species or a change in the internal energy of the reactant ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001027 ; owl:annotatedTarget "PEFF keyword for the modified residue with UniMod identifier."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001028 ; owl:annotatedTarget "PEFF keyword for the simple sequence variation of a single amino acid change. A change to a stop codon is permitted with a * symbol. More complex variations must be encoded with the VariantComplex term."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001029 ; owl:annotatedTarget "PEFF keyword for a sequence variation that is more complex than a single amino acid change or change to a stop codon."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001030 ; owl:annotatedTarget "PEFF keyword for the proteoforms of this protein, constructed as a set of annotation identifiers."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000440 ; owl:annotatedTarget "OBSOLETE Fragmentation reaction in which the molecularity is treated as one, irrespective of whether the dissociative state is that of a metastable ion produced in the ion source or results from collisional excitation of a stable ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001031 ; owl:annotatedTarget "PEFF keyword for the disulfide bonds in this protein, constructed as a sets of annotation identifiers of two half-cystine modifications."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001032 ; owl:annotatedTarget "PEFF keyword describing the type of processing event being described."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001033 ; owl:annotatedTarget "PEFF keyword for the individual protein entry comment. It is discouraged to put parsable information here. This is only for free-text commentary."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001034 ; owl:annotatedTarget "Short peptide that is cleaved off a newly synthesized protein and generally immediately degraded in the process of protein maturation, and is not a signal peptide or transit peptide."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_0001035 ; owl:annotatedTarget "N-terminal methionine residue of a protein that can be co-translationally cleaved."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_1002001 ; owl:annotatedTarget "([0-9]+|[A-Z*](|.+)?)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_1002002 ; owl:annotatedTarget "(AA|NA|DNA|cDNA|RNA|RNAi|tRNA|rRNA|siRNA|mDNA|mRNA|snoRNA|ncRNA|EST|[a-z0-9A-Z]+)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PEFF"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:PEFF_1002003 ; owl:annotatedTarget "(Complete|Fragment|[a-z0-9A-Z]+)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000441 ; owl:annotatedTarget "Function or process of the mass spectrometer where it records a spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000442 ; owl:annotatedTarget "Representation of intensity values corresponding to a range of measurement space."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000443 ; owl:annotatedTarget "Mass analyzer separates the ions according to their mass-to-charge ratio."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000444 ; owl:annotatedTarget "OBSOLETE Mass/charge separation Method."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000445 ; owl:annotatedTarget "OBSOLETE Sequential m/z separation method."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000446 ; owl:annotatedTarget "The ionization of any species by the interaction of a focused beam of ions having a translational energy of several thousand eV with a solid sample."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000447 ; owl:annotatedTarget "Finnigan LTQ MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000448 ; owl:annotatedTarget "Finnigan LTQ FT MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000449 ; owl:annotatedTarget "Finnigan LTQ Orbitrap MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000450 ; owl:annotatedTarget "Finnigan LXQ MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000025 ; owl:annotatedTarget "A property of space that produces a force on a charged particle equal to qv x B where q is the particle charge and v its velocity."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000451 ; owl:annotatedTarget "Terms used to describe the Analyzer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000452 ; owl:annotatedTarget "Terms used to describe types of data processing."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000453 ; owl:annotatedTarget "The device that detects ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000454 ; owl:annotatedTarget "OBSOLETE Additional terms to describe the instrument as outlined in the mass spec doc, Appendix 1, section 1.5."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000455 ; owl:annotatedTarget "Ion selection properties that are associated with a value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000456 ; owl:annotatedTarget "Terms to describe the precursor activation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000457 ; owl:annotatedTarget "Terms to describe the sample."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000458 ; owl:annotatedTarget "Terms to describe the source."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000459 ; owl:annotatedTarget "OBSOLETE Terms used to describe the spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000460 ; owl:annotatedTarget "OBSOLETE Terms to describe units."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000461 ; owl:annotatedTarget "OBSOLETE Terms to describe Additional."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000026 ; owl:annotatedTarget "Type of detector used in the mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000462 ; owl:annotatedTarget "Device used in the construction of a mass spectrometer to focus, contain or otherwise manipulate ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000463 ; owl:annotatedTarget "Description of the instrument or the mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000464 ; owl:annotatedTarget "OBSOLETE A unit of measurement for mass."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000465 ; owl:annotatedTarget "Relative orientation of the electromagnetic field during the selection and detection of ions in the mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000466 ; owl:annotatedTarget "OBSOLETE Alternating."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000467 ; owl:annotatedTarget "The 1200 Series LC/MSD SL ion trap belongs to the Agilent LC/MSD ion trap family. It provides fast polarity switching and multisignal data acquisition capabilities in a single run while also providing 5 stages of automated data dependent MS2 and 11 stages of manual MS2."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000468 ; owl:annotatedTarget "The 6110 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with an entry level single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6110 Quadrupole mass spectrometer has m/z range of 10-1500 and 2500 u/s scan speed. It proves useful for wide range of SIM quantitative applications."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000469 ; owl:annotatedTarget "The 6120A Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers. 6120 quadrupole mass spectrometer has m/z range of 10-1500, 2500 u/s scan speed and utilizes multiple signal acquisition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000470 ; owl:annotatedTarget "The 6130 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 series of Agilent mass spectrometers. The 6130 quadrupole mass spectrometer has m/z range of 2-3000, 2500 u/s scan speed in standard mode and 5250 u/s speed in fast-scan mode. It also uses multiple signal acquisition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000471 ; owl:annotatedTarget "The 6140 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6140 Quadrupole mass spectrometer has m/z range of 10-1350, 2500 u/s scan speed in standard mode and 10000 u/s speed in fast-scan mode. It also uses multiple signal acquisition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000472 ; owl:annotatedTarget "The 6210 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000473 ; owl:annotatedTarget "The 6310 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.35 resolution and mass range of 200-4000 with resolution of 3-4. The scan speed varies from 1650-27000 for the respective mass ranges."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000474 ; owl:annotatedTarget "The 6320 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000475 ; owl:annotatedTarget "The 6330 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000476 ; owl:annotatedTarget "The 6340 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000477 ; owl:annotatedTarget "The 6410 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. Mass range of the mass spectrometer is 15-1650 m/z, resolution is at three settings of 0.7 u (unit), 1.2 u (wide) and 2.5 u (widest). The mass accuracy for 6410 mass spectrometer is 0.1 across the mass range. The collision cell is a hexapole with linear acceleration."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000478 ; owl:annotatedTarget "The LC/MSD VL ion trap is part of the family of Agilent ion trap mass spectrometers. It has ESI, APCI and APPI ion sources and is a useful ion trap when the amount of sample is not the limiting factor."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000479 ; owl:annotatedTarget "OBSOLETE Terms that will likely become obsolete unless there are wails of dissent."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000027 ; owl:annotatedTarget "Method by which detector signal is acquired by the data system."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000480 ; owl:annotatedTarget "Analyzer properties that are associated with a value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000481 ; owl:annotatedTarget "Detector attribute recognized as a value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000482 ; owl:annotatedTarget "Property of a source device that need a value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000483 ; owl:annotatedTarget "Thermo Fisher Scientific instrument model. The company has gone through several names including Thermo Finnigan, Thermo Scientific."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000484 ; owl:annotatedTarget "An ion trapping device that consists of an outer barrel-like electrode and a coaxial inner spindle-like electrode that form an electrostatic field with quadro-logarithmic potential distribution. The frequency of harmonic oscillations of the orbitally trapped ions along the axis of the electrostatic field is independent of the ion velocity and is inversely proportional to the square root of m/z so that the trap can be used as a mass analyzer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000485 ; owl:annotatedTarget "Nanospray Inlet."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000486 ; owl:annotatedTarget "Potential difference at the MS source in volts."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000487 ; owl:annotatedTarget "Ion optics involves components that help focus ion streams in mass spectrometry."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000488 ; owl:annotatedTarget "Hitachi instrument model."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000489 ; owl:annotatedTarget "Varian instrument model."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000490 ; owl:annotatedTarget "Agilent instrument model."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000491 ; owl:annotatedTarget "Dionex instrument model."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000492 ; owl:annotatedTarget "Thermo Electron Corporation instrument model."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000493 ; owl:annotatedTarget "Finnigan MAT instrument model."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000494 ; owl:annotatedTarget "Thermo Scientific instrument model."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000003 ; owl:annotatedTarget "The chemical phase of a pure sample, or the state of a mixed sample."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000028 ; owl:annotatedTarget "The resolving power of the detector to detect the smallest difference between two ions so that the valley between them is a specified fraction of the peak height."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000495 ; owl:annotatedTarget "Applied Biosystems instrument model."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000496 ; owl:annotatedTarget "Instrument properties that are associated with a value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000497 ; owl:annotatedTarget "Special scan mode where data with improved resolution is acquired. This is typically achieved by scanning a more narrow m/z window or scanning with a lower scan rate."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000498 ; owl:annotatedTarget "OBSOLETE Feature of the ion trap mass spectrometer where MS data is acquired over a mass range."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000499 ; owl:annotatedTarget "Nonphysical characteristic attributed to a spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000500 ; owl:annotatedTarget "The lower m/z bound of a mass spectrometer scan window."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000501 ; owl:annotatedTarget "The upper m/z bound of a mass spectrometer scan window."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000502 ; owl:annotatedTarget "The time spent gathering data across a peak."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000503 ; owl:annotatedTarget "Nonphysical characteristic attributed to a spectrum acquisition scan."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000504 ; owl:annotatedTarget "M/z value of the signal of highest intensity in the mass spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000505 ; owl:annotatedTarget "The intensity of the greatest peak in the mass spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000506 ; owl:annotatedTarget "OBSOLETE Ion Role."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000029 ; owl:annotatedTarget "The rate of signal sampling (measurement) with respect to time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000507 ; owl:annotatedTarget "Nonphysical characteristic attributed to an ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000508 ; owl:annotatedTarget "OBSOLETE Ion Type."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000509 ; owl:annotatedTarget "Activation Energy."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000510 ; owl:annotatedTarget "Precursor Activation Attribute."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000511 ; owl:annotatedTarget "Stage number achieved in a multi stage mass spectrometry acquisition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000030 ; owl:annotatedTarget "OBSOLETE Name of instrument vendor."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000512 ; owl:annotatedTarget "A string unique to Thermo instrument describing instrument settings for the scan."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000513 ; owl:annotatedTarget "A data array of values."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000514 ; owl:annotatedTarget "A data array of m/z values."^^xsd:string . [] a owl:Axiom ; rdfs:label "32-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1000514 ; owl:annotatedTarget "binary-data-type:MS:1000521"^^xsd:string . [] a owl:Axiom ; rdfs:label "64-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1000514 ; owl:annotatedTarget "binary-data-type:MS:1000523"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000515 ; owl:annotatedTarget "A data array of intensity values."^^xsd:string . [] a owl:Axiom ; rdfs:label "32-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1000515 ; owl:annotatedTarget "binary-data-type:MS:1000521"^^xsd:string . [] a owl:Axiom ; rdfs:label "64-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1000515 ; owl:annotatedTarget "binary-data-type:MS:1000523"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000516 ; owl:annotatedTarget "A data array of charge values."^^xsd:string . [] a owl:Axiom ; rdfs:label "32-bit integer"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1000516 ; owl:annotatedTarget "binary-data-type:MS:1000519"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000517 ; owl:annotatedTarget "A data array of signal-to-noise values."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000031 ; owl:annotatedTarget "Instrument model name not including the vendor's name."^^xsd:string . [] a owl:Axiom ; rdfs:label "32-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1000517 ; owl:annotatedTarget "binary-data-type:MS:1000521"^^xsd:string . [] a owl:Axiom ; rdfs:label "64-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1000517 ; owl:annotatedTarget "binary-data-type:MS:1000523"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000518 ; owl:annotatedTarget "Encoding type of binary data specifying the binary representation and precision, e.g. 64-bit float."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000519 ; owl:annotatedTarget "Signed 32-bit little-endian integer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000520 ; owl:annotatedTarget "OBSOLETE Signed 16-bit float."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000521 ; owl:annotatedTarget "32-bit precision little-endian floating point conforming to IEEE-754."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000522 ; owl:annotatedTarget "Signed 64-bit little-endian integer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000523 ; owl:annotatedTarget "64-bit precision little-endian floating point conforming to IEEE-754."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000524 ; owl:annotatedTarget "Describes the data content on the file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000525 ; owl:annotatedTarget "Way in which the spectrum is represented, either with regularly spaced data points or with a list of centroided peaks."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000526 ; owl:annotatedTarget "Waters data file format found in a Waters RAW directory, generated from an MS acquisition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000527 ; owl:annotatedTarget "Highest m/z value observed in the m/z array."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000032 ; owl:annotatedTarget "Free text description of a single customization made to the instrument; for several modifications, use several entries."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000528 ; owl:annotatedTarget "Lowest m/z value observed in the m/z array."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000529 ; owl:annotatedTarget "Serial Number of the instrument."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000530 ; owl:annotatedTarget "Conversion of one file format to another."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000531 ; owl:annotatedTarget "Software related to the recording or transformation of spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000532 ; owl:annotatedTarget "Thermo Finnigan software for data acquisition and analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000533 ; owl:annotatedTarget "Thermo Finnigan software for data analysis of peptides and proteins."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000534 ; owl:annotatedTarget "Micromass software for data acquisition and analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000535 ; owl:annotatedTarget "Bruker software for data analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000033 ; owl:annotatedTarget "The removal of isotope peaks to represent the fragment ion as one data point and is commonly done to reduce complexity. It is done in conjunction with the charge state deconvolution."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000536 ; owl:annotatedTarget "Applied Biosystems software for data acquisition and analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000537 ; owl:annotatedTarget "Applied Biosystems software for data acquisition and analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000538 ; owl:annotatedTarget "A software for converting Waters raw directory format to mzXML or mzML. MassWolf was originally developed at the Institute for Systems Biology."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000539 ; owl:annotatedTarget "Applied Biosystems MALDI-TOF data acquisition and analysis system."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000540 ; owl:annotatedTarget "Bruker software for data acquisition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000541 ; owl:annotatedTarget "A software program for converting Thermo Finnigan RAW file format to mzXML or mzML. ReAdW was originally developed at the Institute for Systems Biology. Its whimsical interleaved spelling and capitalization is pronounced \"readraw\"."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000542 ; owl:annotatedTarget "A software program for converting Applied Biosystems wiff file format to mzXML format. MzStar was originally developed at the Institute for Systems Biology. It is now obsoleted by the MzWiff program."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000543 ; owl:annotatedTarget "Data processing attribute used to describe the type of data processing performed on the data file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000544 ; owl:annotatedTarget "Conversion of a file format to Proteomics Standards Initiative mzML file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000545 ; owl:annotatedTarget "Conversion of a file format to Institute of Systems Biology mzXML file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000034 ; owl:annotatedTarget "The determination of the mass of an ion based on the mass spectral peaks that represent multiple-charge ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000546 ; owl:annotatedTarget "Conversion of a file format to Proteomics Standards Initiative mzData file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000547 ; owl:annotatedTarget "Object Attribute."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000548 ; owl:annotatedTarget "Sample properties that are associated with a value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000549 ; owl:annotatedTarget "Selection window properties that are associated with a value."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000550 ; owl:annotatedTarget "OBSOLETE Time Unit."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000551 ; owl:annotatedTarget "SCIEX or Applied Biosystems|MDS SCIEX software for data acquisition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000552 ; owl:annotatedTarget "OBSOLETE Maldi Spot Identifier."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000035 ; owl:annotatedTarget "Spectral peak processing conducted on the acquired data to convert profile data to centroided data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000553 ; owl:annotatedTarget "A software program for converting Agilent MassHunter format to mzXML or mzML. Trapper was originally developed at the Institute for Systems Biology."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000554 ; owl:annotatedTarget "ThermoFinnigan LCQ Deca."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000555 ; owl:annotatedTarget "LTQ Orbitrap Discovery."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000556 ; owl:annotatedTarget "LTQ Orbitrap XL."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000557 ; owl:annotatedTarget "LTQ FT Ultra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000558 ; owl:annotatedTarget "GC Quantum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000559 ; owl:annotatedTarget "Spectrum type."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000560 ; owl:annotatedTarget "The format of the file being used. This could be a instrument or vendor specific proprietary file format or a converted open file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000036 ; owl:annotatedTarget "OBSOLETE."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000561 ; owl:annotatedTarget "Checksum is a form of redundancy check, a simple way to protect the integrity of data by detecting errors in data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000562 ; owl:annotatedTarget "Applied Biosystems WIFF file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000563 ; owl:annotatedTarget "Thermo Scientific RAW file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000564 ; owl:annotatedTarget "Proteomics Standards Inititative mzData file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000565 ; owl:annotatedTarget "Micromass PKL file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000566 ; owl:annotatedTarget "Institute of Systems Biology mzXML file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000567 ; owl:annotatedTarget "Bruker/Agilent YEP file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000568 ; owl:annotatedTarget "MD5 (Message-Digest algorithm 5) is a (now deprecated) cryptographic hash function with a 128-bit hash value used to check the integrity of files."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000037 ; owl:annotatedTarget "OBSOLETE Terms to describe the polarity setting of the instrument."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000569 ; owl:annotatedTarget "SHA-1 (Secure Hash Algorithm-1) is a cryptographic hash function designed by the National Security Agency (NSA). It is also used to verify file integrity. Since 2011 it has been deprecated by the NIST as a U. S. government standard."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000570 ; owl:annotatedTarget "Method used to combine the mass spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000571 ; owl:annotatedTarget "Spectra Sum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000572 ; owl:annotatedTarget "Compression Type."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000573 ; owl:annotatedTarget "Spectra is combined by calculating the median of the spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000574 ; owl:annotatedTarget "Zlib."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000575 ; owl:annotatedTarget "Spectra is combined by calculating the mean of the spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000038 ; owl:annotatedTarget "OBSOLETE Acquisition time in minutes."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000576 ; owl:annotatedTarget "No Compression."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000577 ; owl:annotatedTarget "Data file from which an entity is sourced."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000578 ; owl:annotatedTarget "LCQ Fleet."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000579 ; owl:annotatedTarget "Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000580 ; owl:annotatedTarget "MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000581 ; owl:annotatedTarget "Spectrum generated from MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000582 ; owl:annotatedTarget "Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000583 ; owl:annotatedTarget "Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000584 ; owl:annotatedTarget "Proteomics Standards Inititative mzML file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000039 ; owl:annotatedTarget "OBSOLETE Acquisition time in seconds."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000585 ; owl:annotatedTarget "Details about a person or organization to contact in case of concern or discussion about the file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000586 ; owl:annotatedTarget "Name of the contact person or organization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000587 ; owl:annotatedTarget "Postal address of the contact person or organization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000588 ; owl:annotatedTarget "Uniform Resource Locator related to the contact person or organization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000589 ; owl:annotatedTarget "Email address of the contact person or organization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000040 ; owl:annotatedTarget "Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000590 ; owl:annotatedTarget "Home institution of the contact person."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000591 ; owl:annotatedTarget "A software program for converting Applied Biosystems wiff file format to the mzXML or mzML format. MzWiff is currently maintained at the Institute for Systems Biology. It replaces the slower mzStar program."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000592 ; owl:annotatedTarget "A process of reducing spikes of intensity in order to reduce noise while preserving real peak signal. Many algorithms can be applied for this process."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000593 ; owl:annotatedTarget "A process of removal of varying intensities generated due to variable energy absorption before further processing can take place. Baseline reduction facilitates meaningful comparision between intensities of m/z values."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000594 ; owl:annotatedTarget "The removal of very low intensity data points that are likely to be spurious noise rather than real signal."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000595 ; owl:annotatedTarget "A data array of relative time offset values from a reference time."^^xsd:string . [] a owl:Axiom ; rdfs:label "32-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1000595 ; owl:annotatedTarget "binary-data-type:MS:1000521"^^xsd:string . [] a owl:Axiom ; rdfs:label "64-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1000595 ; owl:annotatedTarget "binary-data-type:MS:1000523"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000596 ; owl:annotatedTarget "An attribute of resolution when recording the detector response in absence of the analyte."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000597 ; owl:annotatedTarget "The electrical potential used to impart kinetic energy to ions in a mass spectrometer."^^xsd:string . [] oboInOwl:hasDbXref "DOI:10.1073/pnas.0402700101"^^xsd:string, "PMID:15210983"^^xsd:string, "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000598 ; owl:annotatedTarget "A process to fragment ions in a mass spectrometer by inducing fragmentation of cations (e.g. peptides or proteins) by transferring electrons from radical-anions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000599 ; owl:annotatedTarget "A process that involves precursor ion activation at high Q, a time delay to allow the precursor to fragment, then a rapid pulse to low Q where all fragment ions are trapped. The product ions can then be scanned out of the ion trap and detected."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string, "source:http://www.proteios.org"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000600 ; owl:annotatedTarget "Database application and analysis platform for proteomics."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000601 ; owl:annotatedTarget "Waters software for data analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000602 ; owl:annotatedTarget "Shimadzu MALDI-TOF instrument model."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000603 ; owl:annotatedTarget "Shimadzu Scientific Instruments instrument model."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000041 ; owl:annotatedTarget "Number of net charges, positive or negative, on an ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000604 ; owl:annotatedTarget "Shimadzu Scientific Instruments LCMS-IT-TOF MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000605 ; owl:annotatedTarget "Shimadzu Scientific Instruments LCMS-2010EV MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000606 ; owl:annotatedTarget "Shimadzu Scientific Instruments LCMS-2010A MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000607 ; owl:annotatedTarget "Shimadzu Biotech AXIMA CFR MALDI-TOF MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000608 ; owl:annotatedTarget "Shimadzu Biotech AXIMA-QIT MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000609 ; owl:annotatedTarget "Shimadzu Biotech AXIMA-CFR plus MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000610 ; owl:annotatedTarget "Shimadzu Biotech AXIMA Performance MALDI-TOF/TOF MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000611 ; owl:annotatedTarget "Shimadzu Biotech AXIMA Confidence MALDI-TOF (curved field reflectron) MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000612 ; owl:annotatedTarget "Shimadzu Biotech AXIMA Assurance Linear MALDI-TOF MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000613 ; owl:annotatedTarget "SEQUEST DTA file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000614 ; owl:annotatedTarget "Peak list file format used by ProteinLynx Global Server."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000615 ; owl:annotatedTarget "ProteoWizard software for data processing and analysis. Primarily developed by the labs of P. Malick and D. Tabb."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000616 ; owl:annotatedTarget "A user-defined scan configuration that specifies the instrumental settings in which a spectrum is acquired. An instrument may cycle through a list of preset scan configurations to acquire data. This is a more generic term for the Thermo \"scan event\", which is defined in the Thermo Xcalibur glossary as: a mass spectrometer scan that is defined by choosing the necessary scan parameter settings. Multiple scan events can be defined for each segment of time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000617 ; owl:annotatedTarget "A data array of electromagnetic radiation wavelength values."^^xsd:string . [] a owl:Axiom ; rdfs:label "32-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1000617 ; owl:annotatedTarget "binary-data-type:MS:1000521"^^xsd:string . [] a owl:Axiom ; rdfs:label "64-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1000617 ; owl:annotatedTarget "binary-data-type:MS:1000523"^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000618 ; owl:annotatedTarget "Highest wavelength observed in an EMR spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000619 ; owl:annotatedTarget "Lowest wavelength observed in an EMR spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000620 ; owl:annotatedTarget "OBSOLETE Spectrum generated from a photodiode array detector (ultraviolet/visible spectrum)."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000621 ; owl:annotatedTarget "An array detector used to record spectra in the ultraviolet and visible region of light."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000622 ; owl:annotatedTarget "Surveyor PDA."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000623 ; owl:annotatedTarget "Accela PDA."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000624 ; owl:annotatedTarget "Inductive detector."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000625 ; owl:annotatedTarget "Representation of a chromatographic separation attribute measurement versus time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000626 ; owl:annotatedTarget "Type of chromatogram measurement being represented."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000627 ; owl:annotatedTarget "Representation of an array of the measurements of a specific single ion current versus time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000628 ; owl:annotatedTarget "Representation of an array of the most intense peaks versus time."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000629 ; owl:annotatedTarget "Threshold below which some action is taken."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000630 ; owl:annotatedTarget "Data processing parameter used in the data processing performed on the data file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000631 ; owl:annotatedTarget "Threshold above which some action is taken."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000632 ; owl:annotatedTarget "Waters oa-ToF based Q-Tof Premier."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000633 ; owl:annotatedTarget "A possible charge state of the ion in a situation where the charge of an ion is known to be one of several possible values rather than a completely unknown value or determined to be a specific charge with reasonable certainty."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000634 ; owl:annotatedTarget "ThermoFinnigan DSQ GC-MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000635 ; owl:annotatedTarget "Thermo Scientific ITQ 700 GC-MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000636 ; owl:annotatedTarget "Thermo Scientific ITQ 900 GC-MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000637 ; owl:annotatedTarget "Thermo Scientific ITQ 1100 GC-MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000638 ; owl:annotatedTarget "Thermo Scientific LTQ XL MS with ETD."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000639 ; owl:annotatedTarget "Thermo Scientific LTQ Orbitrap XL MS with ETD."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000640 ; owl:annotatedTarget "Thermo Scientific DFS HR GC-MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000641 ; owl:annotatedTarget "Thermo Scientific DSQ II GC-MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000642 ; owl:annotatedTarget "Thermo Scientific MALDI LTQ XL MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000643 ; owl:annotatedTarget "Thermo Scientific MALDI LTQ Orbitrap MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000644 ; owl:annotatedTarget "Thermo Scientific TSQ Quantum Access MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000645 ; owl:annotatedTarget "Thermo Scientific Element XR HR-ICP-MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000646 ; owl:annotatedTarget "Thermo Scientific Element 2 HR-ICP-MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000647 ; owl:annotatedTarget "Thermo Scientific Element GD Glow Discharge MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000648 ; owl:annotatedTarget "Thermo Scientific GC IsoLink Isotope Ratio MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000649 ; owl:annotatedTarget "Thermo Scientific Exactive MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000650 ; owl:annotatedTarget "Thermo Scientific software for data analysis of peptides and proteins."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000651 ; owl:annotatedTarget "SCIEX or Applied Biosystems|MDS SCIEX QTRAP 3200."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000652 ; owl:annotatedTarget "SCIEX or Applied Biosystems|MDS SCIEX 4800 Plus MALDI TOF-TOF Analyzer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000653 ; owl:annotatedTarget "SCIEX or Applied Biosystems|MDS SCIEX API 3200 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000654 ; owl:annotatedTarget "SCIEX or Applied Biosystems|MDS SCIEX API 5000 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000655 ; owl:annotatedTarget "SCIEX or Applied Biosystems|MDS SCIEX QSTAR Elite."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000656 ; owl:annotatedTarget "Applied Biosystems|MDS SCIEX QSTAR Pulsar."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000657 ; owl:annotatedTarget "Applied Biosystems|MDS SCIEX QSTAR XL."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000658 ; owl:annotatedTarget "Applied Biosystems|MDS SCIEX 4800 Proteomics Analyzer."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000659 ; owl:annotatedTarget "SCIEX or Applied Biosystems software for data acquisition and analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000042 ; owl:annotatedTarget "Intensity of ions as measured by the height or area of a peak in a mass spectrum."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000661 ; owl:annotatedTarget "SCIEX or Applied Biosystems software for data acquisition and analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000662 ; owl:annotatedTarget "SCIEX or Applied Biosystems|MDS SCIEX software metabolite identification."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000663 ; owl:annotatedTarget "SCIEX or Applied Biosystems|MDS SCIEX software for protein ID and quant."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000664 ; owl:annotatedTarget "Applied Biosystems|MDS SCIEX software for tissue imaging."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000665 ; owl:annotatedTarget "Applied Biosystems|MDS SCIEX software for metabolomics and biomarker profiling."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000666 ; owl:annotatedTarget "Applied Biosystems|MDS SCIEX software for MRM assay development."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000667 ; owl:annotatedTarget "Applied Biosystems|MDS SCIEX software for bio-related data exploration."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000668 ; owl:annotatedTarget "Applied Biosystems|MDS SCIEX software for protein identification."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000669 ; owl:annotatedTarget "Applied Biosystems|MDS SCIEX software for protein ID and quant by ICAT."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000670 ; owl:annotatedTarget "Applied Biosystems|MDS SCIEX software for protein ID and quant by iTRAQ."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000043 ; owl:annotatedTarget "Intensity units are commonly arbitrary. Detected in counts per second (cps) when using counting detectors, but measured in volts when using analog detectors."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000671 ; owl:annotatedTarget "Applied Biosystems|MDS SCIEX software for MS-BLAST identification."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000672 ; owl:annotatedTarget "SCIEX Cliquid software for data analysis and quantitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000673 ; owl:annotatedTarget "Applied Biosystems|MDS SCIEX software for MRM assay development."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000674 ; owl:annotatedTarget "Applied Biosystems|MDS SCIEX software for MRM-based quantitation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000675 ; owl:annotatedTarget "The 6220 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000676 ; owl:annotatedTarget "The 6510 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000677 ; owl:annotatedTarget "The 6520A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 26,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000678 ; owl:annotatedTarget "Software for data acquisition of 6000 series instruments."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000679 ; owl:annotatedTarget "Software for open access data acquisition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000680 ; owl:annotatedTarget "Software for data analysis of data from 6000 series instruments."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000681 ; owl:annotatedTarget "Software for quantitation of Triple Quadrupole and Quadrupole Time-of-Flight data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000682 ; owl:annotatedTarget "Software for identification of metabolites."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000683 ; owl:annotatedTarget "Software for protein characterization."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000684 ; owl:annotatedTarget "Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000685 ; owl:annotatedTarget "Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000686 ; owl:annotatedTarget "Personal Metabolite Database for MassHunter Workstation. Software for identification of human metabolites."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000687 ; owl:annotatedTarget "Software for protein identification and characterization of complex protein digest mixtures."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000688 ; owl:annotatedTarget "Software for data analysis of 6300 series ion trap mass spectrometers."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000689 ; owl:annotatedTarget "Agilent software for data acquisition and analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000690 ; owl:annotatedTarget "SCIEX or Applied Biosystems software for data acquisition and analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000044 ; owl:annotatedTarget "Fragmentation method used for dissociation or fragmentation."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000691 ; owl:annotatedTarget "Applied Biosystems|MDS SCIEX software for data acquisition and analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000692 ; owl:annotatedTarget "Bruker software for data acquisition and analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000693 ; owl:annotatedTarget "Thermo Finnigan software for data acquisition and analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000694 ; owl:annotatedTarget "Waters software for data acquisition and analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000695 ; owl:annotatedTarget "Bruker Daltonics' apex ultra: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000696 ; owl:annotatedTarget "Bruker Daltonics' autoflex III smartbeam: MALDI TOF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000697 ; owl:annotatedTarget "Bruker Daltonics' HCT Series."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000698 ; owl:annotatedTarget "Bruker Daltonics' HCTultra: ESI TOF, Nanospray, APCI, APPI."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000699 ; owl:annotatedTarget "Bruker Daltonics' HCTultra PTM: ESI TOF, Nanospray, APCI, APPI, PTR."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000700 ; owl:annotatedTarget "Bruker Daltonics' HCTultra ETD II: ESI Q-TOF, Nanospray, APCI, APPI, ETD."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000004 ; owl:annotatedTarget "Total mass of sample used."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000701 ; owl:annotatedTarget "Bruker Daltonics' microflex LT: MALDI TOF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000702 ; owl:annotatedTarget "Bruker Daltonics' micrOTOF: ESI TOF, APCI, APPI."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000703 ; owl:annotatedTarget "Bruker Daltonics' micrOTOF-Q: ESI Q-TOF, Nanospray, APCI, APPI."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000704 ; owl:annotatedTarget "Bruker Daltonics' micrOTOF-Q II: ESI Q-TOF, Nanospray, APCI, APPI."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000705 ; owl:annotatedTarget "Bruker Daltonics' ultraflex III TOF/TOF: MALDI TOF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000706 ; owl:annotatedTarget "Bruker software for data acquisition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000707 ; owl:annotatedTarget "Bruker software for data analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000708 ; owl:annotatedTarget "Bruker CLINPROT software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000709 ; owl:annotatedTarget "Bruker CLINPROT micro software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000710 ; owl:annotatedTarget "Bruker CLINPROT robot software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000711 ; owl:annotatedTarget "Bruker ClinProTools software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000712 ; owl:annotatedTarget "Bruker Compass software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000713 ; owl:annotatedTarget "Bruker Compass for HCT/esquire software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000714 ; owl:annotatedTarget "Bruker Compass for micrOTOF software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000715 ; owl:annotatedTarget "Bruker compass OpenAccess software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000716 ; owl:annotatedTarget "Bruker compass Security Pack software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000717 ; owl:annotatedTarget "Bruker stand-alone software for data conversion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000718 ; owl:annotatedTarget "Bruker software library for data access."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000719 ; owl:annotatedTarget "Bruker software for data analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000720 ; owl:annotatedTarget "Bruker software for data acquisition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000045 ; owl:annotatedTarget "Energy for an ion experiencing collision with a stationary gas particle resulting in dissociation of the ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000721 ; owl:annotatedTarget "Bruker software for data acquisition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000722 ; owl:annotatedTarget "Bruker software for data analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000723 ; owl:annotatedTarget "Bruker GENOLINK software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000724 ; owl:annotatedTarget "Bruker GenoTools software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000725 ; owl:annotatedTarget "Bruker software for data acquisition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000726 ; owl:annotatedTarget "Bruker software for data acquisition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000727 ; owl:annotatedTarget "Bruker PolyTools software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000728 ; owl:annotatedTarget "Bruker software for data analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000729 ; owl:annotatedTarget "Bruker PROTEINEER software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000730 ; owl:annotatedTarget "Bruker PROTEINEER dp software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000046 ; owl:annotatedTarget "OBSOLETE Energy units are represented in either eV or Joules."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000731 ; owl:annotatedTarget "Bruker PROTEINEER fc software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000732 ; owl:annotatedTarget "Bruker PROTEINEER spII software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000733 ; owl:annotatedTarget "Bruker PROTEINEER-LC software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:PI"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000734 ; owl:annotatedTarget "Bruker ProteinScape software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000735 ; owl:annotatedTarget "BrukerPureDisk software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000736 ; owl:annotatedTarget "Bruker software for data analysis."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000737 ; owl:annotatedTarget "Bruker software for data acquisition."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000738 ; owl:annotatedTarget "Bruker TargetAnalysis software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000739 ; owl:annotatedTarget "Bruker WARP-LC software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000740 ; owl:annotatedTarget "Parameter file used to configure the acquisition of raw data on the instrument."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000047 ; owl:annotatedTarget "State if the sample is in emulsion form."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000741 ; owl:annotatedTarget "Conversion to dta format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000742 ; owl:annotatedTarget "Thermo Finnigan SRF file format."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000743 ; owl:annotatedTarget "Thermo Scientific TSQ Quantum Ultra AM."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000744 ; owl:annotatedTarget "Mass-to-charge ratio of an selected ion."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000745 ; owl:annotatedTarget "The correction of the spectrum scan times, as used e.g. in label-free proteomics."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000746 ; owl:annotatedTarget "The removal of very high intensity data points."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000747 ; owl:annotatedTarget "The time that a data processing action was finished."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000048 ; owl:annotatedTarget "State if the sample is in gaseous form."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000748 ; owl:annotatedTarget "ThermoFinnigan SSQ 7000 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000749 ; owl:annotatedTarget "ThermoFinnigan TSQ 7000 MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000750 ; owl:annotatedTarget "ThermoFinnigan TSQ MS."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000751 ; owl:annotatedTarget "Thermo Scientific TSQ Quantum Ultra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000752 ; owl:annotatedTarget "TOPP (The OpenMS proteomics pipeline) software."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000753 ; owl:annotatedTarget "Removes the baseline from profile spectra using a top-hat filter."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000754 ; owl:annotatedTarget "Exports data from an OpenMS database to a file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000755 ; owl:annotatedTarget "Imports data to an OpenMS database."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000756 ; owl:annotatedTarget "Converts between different MS file formats."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000757 ; owl:annotatedTarget "Extracts or manipulates portions of data from peak, feature or consensus feature files."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000049 ; owl:annotatedTarget "State if the sample is in liquid form."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000758 ; owl:annotatedTarget "Merges several MS files into one file."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000759 ; owl:annotatedTarget "Applies an internal calibration."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000760 ; owl:annotatedTarget "OBSOLETE Corrects retention time distortions between maps."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000761 ; owl:annotatedTarget "Normalizes peak intensities in an MS run."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000762 ; owl:annotatedTarget "OBSOLETE Removes noise from profile spectra by using different smoothing techniques."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000763 ; owl:annotatedTarget "OBSOLETE Finds mass spectrometric peaks in profile mass spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000764 ; owl:annotatedTarget "Transforms an LC/MS map into a resampled map or a png image."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000765 ; owl:annotatedTarget "OBSOLETE Applies a filter to peak spectra."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000766 ; owl:annotatedTarget "Applies time of flight calibration."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000050 ; owl:annotatedTarget "State if the sample is in solid form."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000767 ; owl:annotatedTarget "Describes how the native spectrum identifiers are formated."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000768 ; owl:annotatedTarget "Native format defined by controllerType=xsd:nonNegativeInteger controllerNumber=xsd:positiveInteger scan=xsd:positiveInteger."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000769 ; owl:annotatedTarget "Native format defined by function=xsd:positiveInteger process=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000770 ; owl:annotatedTarget "Native format defined by sample=xsd:nonNegativeInteger period=xsd:nonNegativeInteger cycle=xsd:nonNegativeInteger experiment=xsd:nonNegativeInteger."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000771 ; owl:annotatedTarget "Native format defined by scan=xsd:nonNegativeInteger."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000772 ; owl:annotatedTarget "Native format defined by scan=xsd:nonNegativeInteger."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000773 ; owl:annotatedTarget "Native format defined by file=xsd:IDREF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000774 ; owl:annotatedTarget "Native format defined by index=xsd:nonNegativeInteger."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000775 ; owl:annotatedTarget "Native format defined by file=xsd:IDREF."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000776 ; owl:annotatedTarget "Native format defined by scan=xsd:nonNegativeInteger."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000051 ; owl:annotatedTarget "State if the sample is in solution form."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000777 ; owl:annotatedTarget "Native format defined by spectrum=xsd:nonNegativeInteger."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000778 ; owl:annotatedTarget "A process that infers the charge state of an MSn spectrum's precursor(s) by the application of some algorithm."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000779 ; owl:annotatedTarget "Infers charge state as single or ambiguously multiple by determining the fraction of intensity below the precursor m/z."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000780 ; owl:annotatedTarget "A process that recalculates existing precursor selected ions with one or more algorithmically determined precursor selected ions."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000781 ; owl:annotatedTarget "Recalculates one or more precursor selected ions by peak detection in the isolation windows of high accuracy MS precursor scans."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000782 ; owl:annotatedTarget "Reduces intensity spikes by applying local polynomial regression (of degree k) on a distribution (of at least k+1 equally spaced points) to determine the smoothed value for each point. It tends to preserve features of the distribution such as relative maxima, minima and width, which are usually 'flattened' by other adjacent averaging techniques."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000783 ; owl:annotatedTarget "Reduces intensity spikes by applying a modelling method known as locally weighted polynomial regression. At each point in the data set a low-degree polynomial is fit to a subset of the data, with explanatory variable values near the point whose response is being estimated. The polynomial is fit using weighted least squares, giving more weight to points near the point whose response is being estimated and less weight to points further away. The value of the regression function for the point is then obtained by evaluating the local polynomial using the explanatory variable values for that data point. The LOESS fit is complete after regression function values have been computed for each of the n data points. Many of the details of this method, such as the degree of the polynomial model and the weights, are flexible."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000784 ; owl:annotatedTarget "Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000785 ; owl:annotatedTarget "Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000052 ; owl:annotatedTarget "State if the sample is in suspension form."^^xsd:string . [] oboInOwl:hasDbXref "PSI:MS"^^xsd:string ; a owl:Axiom ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedSource obo:MS_1000786 ; owl:annotatedTarget "A data array that contains data not covered by any other term in this group. Please do not use this term, if the binary data array type might be commonly used - contact the PSI-MS working group in order to have another CV term added."^^xsd:string . [] a owl:Axiom ; rdfs:label "32-bit integer"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1000786 ; owl:annotatedTarget "binary-data-type:MS:1000519"^^xsd:string . [] a owl:Axiom ; rdfs:label "32-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1000786 ; owl:annotatedTarget "binary-data-type:MS:1000521"^^xsd:string . [] a owl:Axiom ; rdfs:label "64-bit integer"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1000786 ; owl:annotatedTarget "binary-data-type:MS:1000522"^^xsd:string . [] a owl:Axiom ; rdfs:label "64-bit float"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1000786 ; owl:annotatedTarget "binary-data-type:MS:1000523"^^xsd:string . [] a owl:Axiom ; rdfs:label "null-terminated ASCII string"^^xsd:string ; owl:annotatedProperty oboInOwl:hasDbXref ; owl:annotatedSource obo:MS_1000786 ; owl:annotatedTarget "binary-data-type:MS:1001479"^^xsd:string .