OBCS: Ontology of Biological and Clinical Statistics

Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this.

has super-classes: process^c
has sub-classes: DNA methylation^c, binding^c, response to stimulus^c

biopsy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002650

has super-classes: collecting specimen from organism^c; has_specified_input^op some device^c; has_specified_input^op some material anatomical entity^c; has_specified_output^op some pre-mortem specimen^c
has sub-classes: bone marrow biopsy^c

bipartite graph^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000215

has super-classes: mathematic graph^c

bivariate normal distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000007

has super-classes: continuous probability distribution^c

blood^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000178

has super-classes: protein-containing material entity^c; bodily fluid^c
has sub-classes: arterial blood^c, placental blood^c

blood assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003040

is equivalent to: assay^c and ((realizes^op some evaluant role^c and (role of^op some blood specimen^c)) and (has_specified_input^op some blood specimen^c and (has role^op some evaluant role^c)))
has super-classes: assay^c
has sub-classes: blood microbiology assay^c

blood assay datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003243

is equivalent to: data item^c and (is_specified_output_of^op some blood assay^c)
has super-classes: data item^c
has sub-classes: antigen specific antibodies in blood assay datum^c, blood microbiology datum^c

blood microbiology assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002649

has super-classes: blood assay^c; organism detection assay^c; (realizes^op some evaluant role^c and (role of^op some blood specimen^c)) and (has_specified_input^op some blood specimen^c and (has role^op some evaluant role^c)); (realizes^op some measurand role^c and (characteristic of^op some organism^c)) and (has_specified_input^op some organism^c); has_specified_input^op some blood specimen^c; has_specified_output^op some data item^c; has_specified_output^op some is about^op some organism^c
has sub-classes: placental blood microbiology assay^c, umbilical cord blood microbiology assay^c

blood microbiology datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003244

is equivalent to: organism detection datum^c and (is_specified_output_of^op some blood microbiology assay^c)
has super-classes: organism detection datum^c; blood assay datum^c
has sub-classes: bacteria in blood datum^c, eukaryota in blood datum^c, placental blood microbiology datum^c, umbilical cord blood microbiology datum^c, virus in blood datum^c

blood specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000655

has super-classes: bodily fluid specimen^c; is_specified_output_of^op some collecting specimen from organism^c; has role^op some specimen role^c; derives from^op some blood^c

bodily fluid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0006314

has super-classes: organism substance^c
has sub-classes: blood^c, milk^c, transudate^c

bodily fluid specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000009

is equivalent to: (specimen^c and (is_specified_output_of^op some specimen collection process^c) and (derives from^op some bodily fluid^c)) and (specimen^c and (is_specified_output_of^op some collecting specimen from organism^c))
has super-classes: specimen from organism^c
has sub-classes: arterial blood specimen^c, blood specimen^c, cerebrospinal fluid specimen^c, milk specimen^c, placental blood specimen^c, pleural fluid specimen^c

bone marrow^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002371

has super-classes: tissue^c

bone marrow biopsy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002662

has super-classes: biopsy^c; has_specified_input^op some bone marrow^c

bone marrow microbiology assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003578

has super-classes: organism detection assay^c; (realizes^op some evaluant role^c and (role of^op some bone marrow specimen^c)) and (has_specified_input^op some bone marrow specimen^c and (has role^op some evaluant role^c)); (realizes^op some measurand role^c and (characteristic of^op some organism^c)) and (has_specified_input^op some organism^c); has_specified_input^op some bone marrow specimen^c; has_specified_output^op some data item^c; has_specified_output^op some is about^op some organism^c

bone marrow microbiology datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003579

is equivalent to: organism detection datum^c and (is_specified_output_of^op some bone marrow microbiology assay^c)
has super-classes: organism detection datum^c

bone marrow specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002512

is equivalent to: (specimen^c and (is_specified_output_of^op some specimen collection process^c) and (derives from^op some bone marrow^c)) and (specimen^c and (is_specified_output_of^op some bone marrow biopsy^c))
has super-classes: specimen from organism^c

boostrapping^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200035

has super-classes: statistical model validation^c; achieves_planned_objective^op some cross validation objective^c

box and whisker plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000243

has super-classes: graph^c
has sub-classes: Altman box and whisker plot^c, Spear box and whisker plot^c

Box-Cox distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000211

has super-classes: normal distribution^c

box-cox transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200007

has super-classes: normalization data transformation^c; achieves_planned_objective^op some data normalization objective^c

bridge ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000004

has super-classes: ontology module^c
has sub-classes: taxonomic bridge ontology module^c

canonical variate analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200100

has super-classes: discriminant analysis^c; partitioning data transformation^c; achieves_planned_objective^op some inferential statistical data analysis objective^c; achieves_planned_objective^op some partitioning objective^c

cardinal data value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000197

has super-classes: numerical data value^c

CART^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000749

has super-classes: decision tree building data transformation^c; achieves_planned_objective^op some decision tree induction objective^c

cartesian spatial coordinate datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000400

has super-classes: data item^c; denotes^op some zero-dimensional spatial region^c; has coordinate unit label^op exactly 1
has sub-classes: one dimensional cartesian spatial coordinate datum^c, three dimensional cartesian spatial coordinate datum^c, two dimensional cartesian spatial coordinate datum^c

case-control study design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000105

has super-classes: study design^c

categorical binding datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003141

has super-classes: binding datum^c; has value specification^op some categorical value specification^c
has sub-classes: negative binding datum^c, positive binding datum^c

categorical label^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000963

has super-classes: datum label^c
has members: ambidexterousⁿⁱ, left handedⁿⁱ, right handedⁿⁱ

categorical measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000938

has super-classes: measurement datum^c; has value specification^op some categorical value specification^c
has sub-classes: handedness categorical measurement datum^c

categorical value specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001930

has super-classes: value specification^c

causal model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000018

has super-classes: statistical model^c

cell^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000000

The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one).

has super-classes: material entity^c
has sub-classes: cell in vitro^c

cell freezing medium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001912

has super-classes: processed material^c

cell in vitro^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0001034

'In vitro', translating literally to 'in glass', typically refers to a controlled, often sterile, laboratory setting where cells or other specimens are placed by some agent for the purpose of studying or manipulating them as part of some research investigation. 'In vitro' is intended to contrast with 'native',which refers to cells or other biological entities that are found in a natural setting. It describes unicellular organisms removed from a natural environement and multicellular organism cells removed from an organism, or cells derived in culture from such displaced cells.

has super-classes: cell^c
has sub-classes: experimentally modified cell in vitro^c

censored data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000050

is equivalent to: data item^c and (is_specified_output_of^op some data collection by censoring^c)
has super-classes: data item^c

center calculation data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200181

is equivalent to: (has_specified_output^op some center value^c) or (achieves_planned_objective^op some center calculation objective^c)
has super-classes: descriptive statistical calculation data transformation^c; achieves_planned_objective^op some descriptive statistical calculation objective^c
has sub-classes: arithmetic mean calculation^c, geometric mean calculation^c, median calculation^c, mode calculation^c, quantile transformation^c, skewness calculation^c

center calculation objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200177

has super-classes: data transformation objective^c

center value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000674

is equivalent to: is_specified_output_of^op some center calculation data transformation^c
has super-classes: derived data from descriptive statistical analysis^c; data set of features^c
has sub-classes: median^c, mode^c

central tendency^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000015

has super-classes: derived data from descriptive statistical analysis^c; data set of features^c; is_specified_output_of^op some descriptive statistical calculation data transformation^c

centroid mass spectrum analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200064

has super-classes: mass spectrometry analysis^c; achieves_planned_objective^op some spectrum analysis objective^c

cerebrospinal fluid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001359

has super-classes: transudate^c

cerebrospinal fluid assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003232

is equivalent to: assay^c and ((realizes^op some evaluant role^c and (role of^op some cerebrospinal fluid specimen^c)) and (has_specified_input^op some cerebrospinal fluid specimen^c and (has role^op some evaluant role^c)))
has super-classes: assay^c
has sub-classes: cerebrospinal fluid microbiology assay^c

cerebrospinal fluid assay datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003252

is equivalent to: data item^c and (is_specified_output_of^op some cerebrospinal fluid assay^c)
has super-classes: data item^c
has sub-classes: cerebrospinal fluid microbiology datum^c

cerebrospinal fluid microbiology assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003240

has super-classes: cerebrospinal fluid assay^c; organism detection assay^c; (realizes^op some evaluant role^c and (role of^op some cerebrospinal fluid specimen^c)) and (has_specified_input^op some cerebrospinal fluid specimen^c and (has role^op some evaluant role^c))

cerebrospinal fluid microbiology datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003253

is equivalent to: organism detection datum^c and (is_specified_output_of^op some cerebrospinal fluid microbiology assay^c)
has super-classes: organism detection datum^c; cerebrospinal fluid assay datum^c

cerebrospinal fluid specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002502

is equivalent to: (specimen^c and (is_specified_output_of^op some specimen collection process^c) and (derives from^op some cerebrospinal fluid^c)) and (specimen^c and (is_specified_output_of^op some collecting specimen from organism^c))
has super-classes: bodily fluid specimen^c

characteristic path length calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200063

has super-classes: mass spectrometry analysis^c; achieves_planned_objective^op some spectrum analysis objective^c

Checklist for Model Quality Assistance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000269

has super-classes: uncertainty analysis^c

chi square test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200200

has super-classes: statistical hypothesis test^c; achieves_planned_objective^op some statistical hypothesis test objective^c
has sub-classes: Cochran–Mantel–Haenszel test^c, McNemar's test^c, Pearson's chi-square test^c, Yates' chi-squared test^c

chi-square distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000119

has super-classes: continuous probability distribution^c

chronic allograft damage index score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003591

has super-classes: clinical data item^c; is about^op some specimen^c

class discovery data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200175

is equivalent to: (has_specified_output^op some clustered data set^c) or (achieves_planned_objective^op some class discovery objective^c)
has super-classes: inferential statistical data analysis^c; achieves_planned_objective^op some inferential statistical data analysis objective^c
has sub-classes: dimensionality reduction^c, discriminant function analysis^c, hierarchical clustering^c, k-means clustering^c, k-nearest neighbors^c, linear discriminant functional analysis^c, principal component regression^c, self-organizing map^c, similarity calculation^c

class discovery objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200178

has super-classes: data transformation objective^c

class prediction data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000663

is equivalent to: (has_specified_output^op some classified data set^c) or (achieves_planned_objective^op some class prediction objective^c)
has super-classes: inferential statistical data analysis^c; achieves_planned_objective^op some inferential statistical data analysis objective^c
has sub-classes: discriminant function analysis^c, linear discriminant functional analysis^c, similarity calculation^c, support vector machine^c

class prediction objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200179

has super-classes: data transformation objective^c

classified data set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000023

is equivalent to: is_specified_output_of^op some class prediction data transformation^c
has super-classes: transformed data set^c; derived data from inferential statistical analysis^c

classified data visualization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200192

has super-classes: data visualization^c; has_specified_output^op some heatmap^c or scatter plot^c; has_specified_input^op only classified data set^c

Cleveland dot plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000066

has super-classes: dot plot^c

clinical data item^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000123

has super-classes: data item^c
has sub-classes: chronic allograft damage index score^c, diagnosis^c, physician's global assessment of disease activity^c, sequential organ failure assessment score^c

cluster^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000251

has super-classes: data set^c

clustered data set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000648

is equivalent to: is_specified_output_of^op some class discovery data transformation^c
has super-classes: transformed data set^c; derived data from inferential statistical analysis^c
has sub-classes: topologically preserved clustered data set^c

clustered data visualization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200190

has super-classes: data visualization^c; has_specified_output^op some dot plot^c or histogram^c or heatmap^c or dendrogram^c or scatter plot^c; has_specified_input^op only clustered data set^c

cochran-armitage test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000027

has super-classes: inferential statistical data analysis^c

Cochran–Mantel–Haenszel test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000246

has super-classes: chi square test^c

coefficient of variation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000081

has super-classes: quantitative confidence value^c

cohen's kappa coefficient^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000069

has super-classes: quantitative confidence value^c

cohen's kappa measurement^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000017

has super-classes: kappa statistic^c

cohort study design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000106

has super-classes: study design^c

collecting specimen from organism^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600005

has super-classes: specimen collection process^c; has_specified_input^op some organism^c; has_specified_output^op some specimen^c; achieves_planned_objective^op some specimen collection objective^c
has sub-classes: biopsy^c

collecting specimen with swab^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002600

has super-classes: specimen collection process^c

collection of incommensurate data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000174

Authors :: Jinjing Guo；Oliver He

has super-classes: data collection^c; realizes^op some concretizes^op some data sampling design^c

column submatrix extraction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200076

has super-classes: submatrix extraction^c

comparative phenotypic assessment^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001546

has super-classes: drawing a conclusion based on data^c; drawing a conclusion^c; has_specified_input^op some measurement datum^c and (is about^op some organism^c or (part of^op some organism^c)); has_specified_output^op some conclusion textual entity^c and (is about^op some (disposition^c or quality^c) and (characteristic of^op some organism^c or (part of^op some organism^c)))

complete linkage hierarchical clustering^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200044

has super-classes: agglomerative hierarchical clustering^c

complex sample design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000108

has super-classes: data sampling design^c

complexity-induced uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000325

definition to be confirmed

has super-classes: subjective uncertainty^c

compound treatment design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000951

has super-classes: intervention design^c; has part^op some study design independent variable^c and (is about^op some study intervention^c and administration of material to specimen^c)
has sub-classes: dose response design^c

computation run time^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001913

has super-classes: time measurement datum^c; is duration of^op some data transformation^c

computed image data set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003333

is equivalent to: image data set^c and (is_specified_output_of^op some image data set analysis^c)
has super-classes: transformed data set^c; image data set^c
has sub-classes: reconstructed magnetic resonance image data set^c

computer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0400107

has super-classes: device^c; has function^op some information processor function^c

concentration unit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000051

has super-classes: measurement unit label^c

conclusion based on data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001909

has super-classes: information content entity^c; is_supported_by_data^op some data item^c; is_specified_output_of^op some drawing a conclusion based on data^c
has sub-classes: diagnosis of an organism^c

conclusion textual entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000144

has super-classes: textual entity^c

concurrent validity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000160

has super-classes: criterion validity^c

confidence interval^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000070

has super-classes: quantitative confidence value^c
has members: 95% confidence intervalⁿⁱ

confounding variable specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000039

has super-classes: directive information entity^c

construct validity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000155

has super-classes: test validity^c
has sub-classes: convergent validity^c, discriminant validity^c

consume data function^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000455

has super-classes: function^c; function of^op some material entity^c

content validity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000158

has super-classes: test validity^c
has sub-classes: face validity^c, representation validity^c

context uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000346

has super-classes: objective uncertainty^c

contig^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/SO_0000149

has super-classes: sequence_assembly^c

contig N50^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001941

has super-classes: N50^c; is about^op some contig^c and (is_specified_output_of^op some sequence assembly process^c)

contingency table^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000145

has super-classes: information content entity^c
has sub-classes: 2x2 contingency table^c

continuant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000002

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: entity^c
has sub-classes: generically dependent continuant^c, independent continuant^c, specifically dependent continuant^c
is in domain of: participates in^op
is in range of: has participant^op
is disjoint with: occurrent^c

continuant fiat boundary^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000140

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: immaterial entity^c
has sub-classes: one-dimensional continuant fiat boundary^c, two-dimensional continuant fiat boundary^c, zero-dimensional continuant fiat boundary^c
is disjoint with: spatial region^c

continuous data value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000194

has super-classes: numerical data value^c

continuous ordinal variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000203

has super-classes: continuous variable^c

continuous probability distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000066

has super-classes: probability distribution^c
has sub-classes: F distribution^c, Student's t distribution^c, beta distribution^c, bivariate normal distribution^c, chi-square distribution^c, exponential distribution^c, gamma distribution^c, log-normal distribution^c, normal distribution^c, studentized range distribution^c

continuous random variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000134

has super-classes: random variable^c

continuous variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000200

has super-classes: statistical variable^c
has sub-classes: continuous ordinal variable^c, interval-scale variable^c, ratio-scale variable^c

continuum mass spectrum analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200062

has super-classes: mass spectrometry analysis^c; achieves_planned_objective^op some spectrum analysis objective^c

contour plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000057

has super-classes: graph^c

convergent validity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000156

has super-classes: construct validity^c

correction objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200168

has super-classes: data transformation objective^c
has sub-classes: background correction objective^c, error correction objective^c

correlation coefficient^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000142

has super-classes: quantitative confidence value^c
has sub-classes: Kendall's correlation coefficient^c, Matthews correlation coefficient^c, Pearson's correlation coefficient^c, Spearman's rank correlation coefficient^c, polychoric correlation coefficient^c, r2 measure of linkage desequilibrium^c

correlation statistical analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000019

has super-classes: inferential statistical data analysis^c; achieves_planned_objective^op some inferential statistical data analysis objective^c
has sub-classes: point biserial correlation^c

correlation study objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200196

has super-classes: data transformation objective^c

cosine transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200017

has super-classes: normalization data transformation^c; achieves_planned_objective^op some data normalization objective^c

covariate specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000040

has super-classes: directive information entity^c

covariation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000029

has super-classes: inferential statistical data analysis^c

credible interval^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000071

has super-classes: quantitative confidence value^c

criterion validity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000159

If the test data and criterion data are collected at the same time, this is referred to as concurrent validity evidence. If the test data are collected first in order to predict criterion data collected at a later point in time, then this is referred to as predictive validity evidence.

has super-classes: test validity^c
has sub-classes: concurrent validity^c, predictive validity^c

critical review of assumptions in model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000270

has super-classes: uncertainty analysis^c

cross over design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500003

has super-classes: repeated measure design^c
has sub-classes: n-to-1 design^c

cross validation objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200188

has super-classes: partitioning objective^c

culture medium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000079

has super-classes: processed material^c

cultured cell^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000010

Note that this class was re-labeled to 'cultured cell' instead of 'cell line cell', as it intent was clarified to cover any cultured cells of multicellular and unicellular organisms. This includes cells actively being cultured, or cells that have been cultured but are stored in a quiescent state for future use. In having been cultured, cells must establish homeostasis and often replicate in a foreign environment. Accomodation of this stress initiates a selection of cells fit for such challenges, wherein necessary adaptive biochemical and.or genetic changes can occur. These changes can set them apart from the in vivo cells from which they derive, and such changes will typically accumulate and change over increasing time in culture.

has super-classes: experimentally modified cell in vitro^c

cultured cell population^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100060

The extent of a 'cultured cell population' is restricted only in that all cell members must share a propagation history (ie be derived through a common lineage of passages from an initial culture). In being defined in this way, this class can be used to refer to the populations that researchers actually use in the practice of science - ie are the inputs to culturing, experimentation, and sharing. The cells in such populations will be a relatively uniform population as they have experienced similar selective pressures due to their continuous co-propagation. And this population will also have a single passage number, again owing to their common passaging history. Cultured cell populations represent only a collection of cells (ie do not include media, culture dishes, etc), and include populations of cultured unicellular organisms or cultured multicellular organism cells. They can exist under active culture, stored in a quiescent state for future use, or applied experimentally.

has super-classes: processed material^c; is_specified_output_of^op some maintaining cell culture^c; has grain^op some cultured cell^c; has grain^op only cultured cell^c

curation status specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000078

is equivalent to: { example to be eventually removed , metadata complete , organizational term , ready for release , metadata incomplete , uncurated , pending final vetting , to be replaced with external ontology term , requires discussion }
has super-classes: data about an ontology part^c
has members: example to be eventually removedⁿⁱ, metadata completeⁿⁱ, metadata incompleteⁿⁱ, organizational termⁿⁱ, pending final vettingⁿⁱ, ready for releaseⁿⁱ, requires discussionⁿⁱ, to be replaced with external ontology termⁿⁱ, uncuratedⁿⁱ

curation subset ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000007

has super-classes: subset ontology module^c

curve fitting data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200072

is equivalent to: (has_specified_output^op some data set of predicted values according to fitted curve^c) or (achieves_planned_objective^op some curve fitting objective^c)
has super-classes: inferential statistical data analysis^c; achieves_planned_objective^op some inferential statistical data analysis objective^c
has sub-classes: biexponential transformation^c, loess fitting^c, log-log curve fitting^c, logistic-log curve fitting^c, logit-log curve fitting^c

curve fitting objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200174

has super-classes: data transformation objective^c

cytometry analysis by automated gating^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002776

has super-classes: gating^c

cytometry analysis by manual gating^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002777

has super-classes: gating^c

data about an ontology part^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000102

has super-classes: data item^c
has sub-classes: curation status specification^c, denotator type^c, obsolescence reason specification^c, ontology module^c

data collapsing^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000028

has super-classes: data transformation^c; achieves_planned_objective^op some merging objective^c

data collection^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000002

is equivalent to: achieves_planned_objective^op some data collection objective^c
has super-classes: planned process^c; realizes^op some concretizes^op some data collection design^c; has_specified_output^op some data item^c; has_specified_output^op only data item^c
has sub-classes: collection of incommensurate data^c, data collection by sampling^c, data collection from document^c, data collection from eMedical record^c, data collection from experiment^c, data collection from literature^c, data collection from observation^c, data collection from online resource^c

data collection by censoring^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000139

has super-classes: data collection by sampling^c; has_specified_output^op some censored data^c

data collection by sampling^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000132

has super-classes: data collection^c; realizes^op some concretizes^op some data sampling design^c
has sub-classes: data collection by censoring^c, data collection from survey^c, random selection^c

data collection by web crawling^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000173

has super-classes: data collection from online resource^c; realizes^op some concretizes^op some web crawling software^c

data collection design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000137

has super-classes: plan specification^c
has sub-classes: data sampling design^c

data collection from document^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000229

is equivalent to: data collection^c and (has_specified_input^op some document^c)
has super-classes: data collection^c

data collection from eMedical record^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000230

is equivalent to: has_specified_input^op some eMedical record^c
has super-classes: data collection^c; has_specified_output^op some data matrix^c

data collection from experiment^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000128

has super-classes: data collection^c

data collection from literature^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000130

has super-classes: data collection^c

data collection from observation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000149

has super-classes: data collection^c

data collection from online database^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000172

has super-classes: data collection from online resource^c

data collection from online resource^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000171

has super-classes: data collection^c; realizes^op some concretizes^op some data sampling design^c
has sub-classes: data collection by web crawling^c, data collection from online database^c

data collection from survey^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000129

has super-classes: data collection by sampling^c

data collection objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000127

has super-classes: objective specification^c

data combination^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200125

has super-classes: data transformation^c; achieves_planned_objective^op some merging objective^c

data imputation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200061

has super-classes: data transformation^c

data item^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000027

has super-classes: information content entity^c
has sub-classes: antigen specific antibodies assay datum^c, binding datum^c, blood assay datum^c, cartesian spatial coordinate datum^c, censored data^c, cerebrospinal fluid assay datum^c, clinical data item^c, data about an ontology part^c, data matrix^c, data set^c, date process started^c, endotracheal aspirate assay datum^c, entomological data item^c, feces assay datum^c, genetic characteristics information^c, induced sputum assay datum^c, insecticide resistance datum^c, measurement datum^c, milk assay datum^c, number of PCR cycles during library construction^c, number of errors^c, number of rounds of amplification^c, numerical data item^c, organism detection datum^c, passage history record^c, predicted data item^c, presence of blood from host organism in blood meal specimen^c, prevalence of blood meal specimens from a host organism^c, prevalence of pathogen in specimens^c, setting datum^c, spike-in dilution factor^c, transformed data item^c, transformed data matrix^c, umbilical cord blood assay datum^c, uncertainty degree level^c, urine assay datum^c

data matrix^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000120

is equivalent to: data item^c and (has member^op only data set^c) and (has member^op min 2 data set^c)
has super-classes: data item^c

data normalization objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200167

has super-classes: data transformation objective^c

data partitioning^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200156

has super-classes: data transformation^c

data representational model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000658

has super-classes: directive information entity^c

data sampling design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000062

has super-classes: data collection design^c
has sub-classes: complex sample design^c, non-randomization sampling design^c, randomization sampling design^c

data set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000100

has super-classes: data item^c; has member^op some data item^c
has sub-classes: cluster^c, data set following probability distribution^c, differential expression analysis data^c, gene list^c, image data set^c, numerical data set^c, sequence library feature count data^c, time sampled measurement data set^c, transformed data set^c
is in domain of: has probability distribution^op

data set following normal distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000225

is equivalent to: has probability distribution^op some normal distribution^c
has super-classes: data set following probability distribution^c

data set following probability distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000224

is equivalent to: has probability distribution^op some probability distribution^c
has super-classes: data set^c
has sub-classes: data set following normal distribution^c

data set of features^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000649

is equivalent to: is_specified_output_of^op some descriptive statistical calculation data transformation^c
has super-classes: transformed data set^c; derived data from statistical analysis^c
has sub-classes: average value^c, center value^c, central tendency^c

data set of predicted values according to fitted curve^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000656

is equivalent to: is_specified_output_of^op some curve fitting data transformation^c
has super-classes: transformed data set^c; derived data from inferential statistical analysis^c

data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200000

is equivalent to: achieves_planned_objective^op some data transformation objective^c
has super-classes: planned process^c; realizes^op some concretizes^op some algorithm^c and (has part^op some objective specification^c); has_specified_input^op only data item^c
has sub-classes: RNA Integrity Number calculation^c, data collapsing^c, data combination^c, data imputation^c, data partitioning^c, data transformation in statistics^c, differential expression analysis data transformation^c, error correction data transformation^c, feature extraction^c, file merge^c, image data set analysis^c, longitudinal data analysis^c, mass spectrometry analysis^c, mathematical feature^c, network analysis^c, non-negative matrix factorization^c, partitioning data transformation^c, partitioning of variance components^c, peak matching^c, power calculation^c, probabilistic algorithm^c, probability density function^c, processing incompatible data^c, scaling data transformation^c, sequence analysis data transformation^c, sequence assembly process^c, sequence trimming^c, split-scale transformation^c, statistical data analysis^c, summing data values^c, survival analysis data transformation^c

data transformation in statistics^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000188

has super-classes: data transformation^c; has_specified_output^op some transformed data item^c
has sub-classes: Anscombe transformation^c, background correction data transformation^c, eMedical record data transformation^c, normal distribution transformation^c, normalization data transformation^c, permutation^c, polynomial transformation^c, rank-order transformation^c, sorting^c, square root transformation^c

data transformation objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200166

has super-classes: objective specification^c
has sub-classes: averaging objective^c, center calculation objective^c, class discovery objective^c, class prediction objective^c, correction objective^c, correlation study objective^c, curve fitting objective^c, data normalization objective^c, data vector reduction objective^c, decision tree induction objective^c, descriptive statistical calculation objective^c, differential expression analysis objective^c, feature extraction objective^c, fuzzy clustering objective^c, inferential statistical data analysis objective^c, inter-rater reliability objective^c, merging objective^c, partitioning objective^c, pattern matching objective^c, scaling objective^c, sequence analysis objective^c, spectrum analysis objective^c, spread calculation objective^c, statistical hypothesis test objective^c, survival analysis objective^c

data vector reduction data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200182

is equivalent to: (has_specified_output^op some reduced dimension data set^c) or (achieves_planned_objective^op some data vector reduction objective^c)
has super-classes: decision tree building data transformation^c
has sub-classes: gating^c

data vector reduction objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200157

has super-classes: data transformation objective^c

data visualization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200111

has super-classes: planned process^c; has_specified_input^op some data item^c; has_specified_output^op some graph^c or image^c; has_specified_input^op only data item^c; has_specified_output^op only graph^c or image^c
has sub-classes: background corrected data visualization^c, classified data visualization^c, clustered data visualization^c, gene list visualization^c

dataset creating^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/APOLLO_SV_00000796

is equivalent to: planned process^c and (has_specified_output^op some data set^c)
has super-classes: planned process^c; has_specified_output^op some data set^c
has sub-classes: Receiver operating characteristic curve analysis^c, arithmetic mean calculation^c, background correction data transformation^c, dimensionality reduction^c, discriminant function analysis^c, false discovery rate correction method^c, family wise error rate correction method^c, geometric mean calculation^c, hierarchical clustering^c, k-means clustering^c, k-nearest neighbors^c, linear discriminant functional analysis^c, median calculation^c, mode calculation^c, moving average^c, normal distribution transformation^c, normalization data transformation^c, principal component regression^c, proportion of expected false positives correction method^c, quantile number of false positives correction method^c, quantile proportion of false positives correction method^c, raw magnetic resonance image data set reconstruction^c, self-organizing map^c, sequence data feature count tabulation^c, similarity calculation^c, skewness calculation^c

date process started^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002471

has super-classes: data item^c

datum label^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000009

has super-classes: information content entity^c
has sub-classes: categorical label^c, measurement unit label^c

dead^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001422

has super-classes: viability^c

decision making^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000257

definition to be confirmed

has super-classes: subjective process^c

decision tree building data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000707

is equivalent to: achieves_planned_objective^op some decision tree induction objective^c
has super-classes: inferential statistical data analysis^c; achieves_planned_objective^op some inferential statistical data analysis objective^c
has sub-classes: CART^c, data vector reduction data transformation^c

decision tree induction objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000704

has super-classes: data transformation objective^c

definitive certainty level^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000368

definition to be confirmed

has super-classes: uncertainty degree level^c

delay and lack of communication between investigators^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000293

definition to be confirmed

has super-classes: uncertainty arise condition^c

delayed information^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000286

definition and classification to be confirmed

has super-classes: uncertainty arise condition^c

demultiplexed sequence data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002601

has super-classes: sequence data^c

dendrogram^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000183

has super-classes: graph^c

denotator type^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000409

is equivalent to: { universal , defined class , named class expression }
has super-classes: data about an ontology part^c
has members: defined classⁿⁱ, named class expressionⁿⁱ, universalⁿⁱ

density plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000079

has super-classes: graph^c

deoxyribonucleic acid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_16991

has super-classes: nucleic acid^c

dependent variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000133

has super-classes: statistical variable^c; is concretized as^op some realized in^op some inferential statistical data analysis^c

derived data from descriptive statistical analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000219

is equivalent to: data item^c and (is_specified_output_of^op some descriptive statistical calculation data transformation^c)
has super-classes: transformed data set^c; derived data from statistical analysis^c
has sub-classes: average value^c, center value^c, central tendency^c

derived data from inferential statistical analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000220

is equivalent to: data item^c and (is_specified_output_of^op some inferential statistical data analysis^c)
has super-classes: derived data from statistical analysis^c
has sub-classes: Incidence rate^c, absolute risk^c, accuracy^c, classified data set^c, clustered data set^c, data set of predicted values according to fitted curve^c, odds ratio^c, outlier^c, prevalence rate^c, quantitative confidence value^c, rank order^c, reduced dimension data set^c, relative risk^c, reliability^c, sensitivity^c, specificity^c, standardized mortality ratio^c, test statistic^c, validity^c, weighted data^c

derived data from statistical analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000218

is equivalent to: data item^c and (is_specified_output_of^op some statistical data analysis^c)
has super-classes: transformed data item^c
has sub-classes: data set of features^c, derived data from descriptive statistical analysis^c, derived data from inferential statistical analysis^c

descriptive statistical calculation data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200184

is equivalent to: (has_specified_output^op some data set of features^c) or (achieves_planned_objective^op some descriptive statistical calculation objective^c); achieves_planned_objective^op some descriptive statistical calculation objective^c
has super-classes: statistical data analysis^c; has_specified_input^op some data set^c
has sub-classes: Receiver operating characteristic curve analysis^c, averaging data transformation^c, center calculation data transformation^c, quantile calculation^c, spread calculation data transformation^c

descriptive statistical calculation objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200078

has super-classes: data transformation objective^c

determinism^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000338

classification to be confirmed

has super-classes: uncertainty^c

detrimental certainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000334

definition and classification to be confirmed

has super-classes: uncertainty^c

detrimental uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000336

definition and classification to be confirmed

has super-classes: uncertainty^c

device^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000968

has super-classes: processed material^c; is_specified_output_of^op some material processing^c; has function^op some function^c
has sub-classes: computer^c, measurement device^c

diagnosis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000073

has super-classes: clinical data item^c
has sub-classes: diagnosis of cancer^c, diagnosis of infectious disease^c

diagnosis of an organism^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003367

has super-classes: conclusion based on data^c; is_specified_output_of^op some organism diagnostic process^c

diagnosis of cancer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002371

has super-classes: diagnosis^c

diagnosis of hepatitis B^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002386

has super-classes: diagnosis of infectious disease^c

diagnosis of hepatitis C^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002387

has super-classes: diagnosis of infectious disease^c

diagnosis of HIV^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002388

has super-classes: diagnosis of infectious disease^c

diagnosis of infectious disease^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002385

has super-classes: diagnosis^c
has sub-classes: diagnosis of HIV^c, diagnosis of hepatitis B^c, diagnosis of hepatitis C^c

diagnostic uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000329

has super-classes: subjective uncertainty^c

diagnostic validity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000138

has super-classes: validity^c

diagram^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000309

has super-classes: figure^c
has sub-classes: graph^c

dichotomous variable specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000041

has super-classes: directive information entity^c

differential expression analysis data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002584

has super-classes: data set^c

differential expression analysis data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000650

is equivalent to: achieves_planned_objective^op some differential expression analysis objective^c
has super-classes: data transformation^c

differential expression analysis objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200031

has super-classes: data transformation objective^c

differential expression analysis using LIMMA linear models for microarry data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000168

has super-classes: inferential statistical data analysis^c; achieves_planned_objective^op some inferential statistical data analysis objective^c

dimensionality reduction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200050

has super-classes: dataset creating^c; class discovery data transformation^c; (has_specified_output^op some clustered data set^c) and (achieves_planned_objective^op some class discovery objective^c)
has sub-classes: principal components analysis dimensionality reduction^c, submatrix extraction^c

directed graph^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000212

has super-classes: mathematic graph^c

directed network graph construction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200128

has super-classes: network graph construction^c

directive information entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000033

has super-classes: information content entity^c; is about^op some realizable entity^c
has sub-classes: action specification^c, confounding variable specification^c, covariate specification^c, data representational model^c, dichotomous variable specification^c, dose specification^c, intervening variable specification^c, objective specification^c, plan specification^c, statistical effect^c, statistical model^c, statistical variable^c, study design dependent variable^c, study design independent variable^c

discrete data value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000195

has super-classes: numerical data value^c

discrete ordinal variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000206

has super-classes: nominal variable^c

discrete probability distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000067

has super-classes: probability distribution^c
has sub-classes: Poisson distribution^c, binomial distribution^c, hypergeometric distribution^c, multinomial distribution^c, negative binomial distribution^c

discrete random variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000135

has super-classes: random variable^c

discrete variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000201

has super-classes: statistical variable^c
has sub-classes: dummy variable^c, multiple response variable^c, nominal variable^c, preference variable^c

discriminant analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200106

has super-classes: inferential statistical data analysis^c; achieves_planned_objective^op some inferential statistical data analysis objective^c
has sub-classes: canonical variate analysis^c, discriminant function analysis^c, linear discriminant functional analysis^c, partial least square discriminant analysis^c

discriminant function analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200099

has super-classes: dataset creating^c; class prediction data transformation^c; discriminant analysis^c; class discovery data transformation^c; (has_specified_output^op some classified data set^c) and (achieves_planned_objective^op some class prediction objective^c); has_specified_output^op some clustered data set^c

discriminant validity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000157

has super-classes: construct validity^c

disease course^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000063

has super-classes: process^c

disease test sensitivity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000094

has super-classes: sensitivity^c

disease test specificity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000095

has super-classes: specificity^c

disposition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000016

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: realizable entity^c
has sub-classes: function^c, sensitivity disposition^c, uncertainty^c
is in range of: has disposition^op
is disjoint with: role^c

diverse populations for study^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000280

definition to be confirmed

has super-classes: uncertainty arise condition^c

division of data along political line for clarity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000306

definition to be confirmed

has super-classes: uncertainty response activity^c

division of labor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000303

definition to be confirmed

has super-classes: uncertainty response activity^c

division of labor along technical/substantive line^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000307

definition to be confirmed

has super-classes: uncertainty response activity^c

divisive hierarchical clustering^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200155

has super-classes: hierarchical clustering^c

DNA extract^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001051

has super-classes: nucleic acid extract^c; is_specified_output_of^op some DNA extraction^c; has grain^op some deoxyribonucleic acid^c

DNA extraction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000257

has super-classes: nucleic acid extraction^c; has_specified_output^op some DNA extract^c

DNA methylation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0006306

has super-classes: biological_process^c

DNA methylation profiling assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000634

has super-classes: epigenetic modification assay^c; (realizes^op some evaluant role^c and (role of^op some DNA extract^c)) and (has_specified_input^op some DNA extract^c and (has role^op some evaluant role^c)); has_specified_input^op some specimen^c and (has part^op some deoxyribonucleic acid^c); has_specified_output^op some data item^c; has_specified_output^op some is about^op some DNA methylation^c; achieves_planned_objective^op some epigenetic modification identification objective^c

DNA methylation profiling data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002583

has super-classes: sequence data^c; is_specified_output_of^op some DNA methylation profiling assay^c

DNA sequence data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001573

has super-classes: sequence data^c; is about^op some primary structure of DNA macromolecule^c

document^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000310

has super-classes: information content entity^c

documenting^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000572

has super-classes: planned process^c; has_specified_input^op some information content entity^c; has_specified_output^op some document^c

dose^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000984

has super-classes: measurement datum^c

dose response curve^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001172

has super-classes: line graph^c

dose response design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001418

has super-classes: compound treatment design^c; has part^op some biological feature identification objective^c; has part^op some study design independent variable^c and (is about^op some study intervention^c and administration of material to specimen^c); has part^op some study design independent variable^c and (is about^op some dose specification^c and (is about^op some administration of material to specimen^c))

dose specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000969

has super-classes: directive information entity^c

dot plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000037

has super-classes: graph^c
has sub-classes: Cleveland dot plot^c, Wilkinson dot plot^c

drawing a conclusion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001834

is equivalent to: has_specified_output^op some conclusion textual entity^c
has super-classes: planned process^c; has_specified_input^op some information content entity^c
has sub-classes: comparative phenotypic assessment^c

drawing a conclusion based on data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000338

has super-classes: planned process^c; has_specified_input^op some data item^c; has_specified_output^op some conclusion based on data^c
has sub-classes: assigning gene property based on phenotypic assessment^c, comparative phenotypic assessment^c, inductive reasoning^c, organism diagnostic process^c

dummy variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000042

has super-classes: statistical variable^c

dummy variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000207

has super-classes: discrete variable^c

Durbin test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000238

has super-classes: non-parametric test^c
has sub-classes: Friedman test^c

dye swap merge^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200055

has super-classes: replicate analysis^c

easting coordinate measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003066

has super-classes: one dimensional cartesian spatial coordinate datum^c

EC50 binding datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003143

is equivalent to: quantitative binding datum^c and (half maximal effective concentration (EC50)^c and (is about^op some binding^c))
has super-classes: half maximal effective concentration (EC50)^c; quantitative binding datum^c
has sub-classes: equilibrium dissociation constant (KD) approximated by EC50^c

ecological validity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000154

has super-classes: external validity^c

ectoderm-derived structure^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0004121

has super-classes: anatomical structure^c
has sub-classes: nasal cavity mucosa^c, skin of body^c

edge betweenness calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200136

has super-classes: edge quality calculation^c

edge quality calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200135

has super-classes: network analysis^c
has sub-classes: edge betweenness calculation^c

edge weighting^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200070

has super-classes: network analysis^c

Edinburgh score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000991

has super-classes: scalar score from composite inputs^c; is quality measurement of^op some handedness^c; has measurement value^dp min 1

editors ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000002

has super-classes: ontology module^c

eh transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200108

has super-classes: normalization data transformation^c; achieves_planned_objective^op some data normalization objective^c

EL++ ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000020

has super-classes: ontology module subsetted by OWL profile^c

eMedical record^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000078

has super-classes: information content entity^c

eMedical record data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000234

has super-classes: data transformation in statistics^c; has_specified_input^op some data matrix^c; has_specified_output^op some transformed data matrix^c

endoderm-derived structure^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0004119

has super-classes: anatomical structure^c
has sub-classes: lung^c, nasal cavity mucosa^c, oropharynx^c, proximo-distal subdivision of respiratory tract^c

endotracheal aspirate assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003233

is equivalent to: assay^c and ((realizes^op some evaluant role^c and (role of^op some endotracheal aspirate specimen^c)) and (has_specified_input^op some endotracheal aspirate specimen^c and (has role^op some evaluant role^c)))
has super-classes: assay^c
has sub-classes: endotracheal tube aspirate microbiology assay^c

endotracheal aspirate assay datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003254

is equivalent to: data item^c and (is_specified_output_of^op some endotracheal aspirate assay^c)
has super-classes: data item^c
has sub-classes: endotracheal tube aspirate microbiology datum^c

endotracheal aspirate specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002972

has super-classes: specimen from organism^c; specimen^c and (is_specified_output_of^op some specimen collection process^c) and (derives from^op some respiratory system fluid/secretion^c); specimen^c and (is_specified_output_of^op some collecting specimen from organism^c)

endotracheal tube aspirate microbiology assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003241

has super-classes: endotracheal aspirate assay^c; organism detection assay^c; (realizes^op some evaluant role^c and (role of^op some endotracheal aspirate specimen^c)) and (has_specified_input^op some endotracheal aspirate specimen^c and (has role^op some evaluant role^c))

endotracheal tube aspirate microbiology datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003255

is equivalent to: organism detection datum^c and (is_specified_output_of^op some endotracheal tube aspirate microbiology assay^c)
has super-classes: organism detection datum^c; endotracheal aspirate assay datum^c
has sub-classes: bacteria in endotracheal tube aspirate datum^c

entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000001

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: thing^c
has sub-classes: continuant^c, occurrent^c

entomological data item^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003077

has super-classes: data item^c

epigenetic modification assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002020

is equivalent to: assay^c and (achieves_planned_objective^op some epigenetic modification identification objective^c)
has super-classes: assay^c
has sub-classes: DNA methylation profiling assay^c

epigenetic modification identification objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001234

has super-classes: molecular feature identification objective^c

equilibrium association constant (KA)^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001548

has super-classes: binding constant^c

equilibrium dissociation constant (KD)^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001536

has super-classes: binding constant^c; has measurement unit label^op some concentration unit^c
has sub-classes: equilibrium dissociation constant (KD) approximated by EC50^c, equilibrium dissociation constant (KD) approximated by IC50^c

equilibrium dissociation constant (KD) approximated by EC50^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001581

is equivalent to: equilibrium dissociation constant (KD)^c and (half maximal effective concentration (EC50)^c and (is about^op some binding^c))
has super-classes: equilibrium dissociation constant (KD)^c; EC50 binding datum^c

equilibrium dissociation constant (KD) approximated by IC50^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001571

is equivalent to: equilibrium dissociation constant (KD)^c and (half maximal inhibitory concentration (IC50)^c and (is about^op some binding^c))
has super-classes: equilibrium dissociation constant (KD)^c; IC50 binding datum^c

error corrected data set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000662

is equivalent to: is_specified_output_of^op some error correction data transformation^c
has super-classes: transformed data set^c
has sub-classes: FWER adjusted p-value^c, q-value^c

error correction data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000668

is equivalent to: achieves_planned_objective^op some error correction objective^c
has super-classes: data transformation^c
has sub-classes: multiple testing correction method^c

error correction objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200186

has super-classes: correction objective^c
has sub-classes: multiple testing correction objective^c

error propagation equation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000263

has super-classes: uncertainty analysis^c

establishing cell culture^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600036

A 'cell culture' as used here referes to a new lineage of cells in culture deriving from a single biological source.. New cultures are established through the initial isolation and culturing of cells from an organismal source, or through changes in an existing cell culture or line that result in a new culture with unique characteristics. This can occur through the passaging/selection of a primary culture into a secondary culture or line, or experimental modifications of an existing cell culture or line such as an immortalization process or other stable genetic modification. This class covers establishment of cultures of either multicellular organism cells or unicellular organisms.

has super-classes: material processing^c; has_specified_input^op some cell^c; has_specified_input^op some culture medium^c; has_specified_output^op some cultured cell population^c; achieves_planned_objective^op some material transformation objective^c

euclidean distance calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200114

has super-classes: similarity calculation^c

Eukaryota^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2759

has super-classes: organism^c

eukaryota in blood datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003263

is equivalent to: blood microbiology datum^c and (is about^op some Eukaryota^c)
has super-classes: blood microbiology datum^c
has sub-classes: eukaryota in placental blood datum^c, eukaryota in umbilical cord blood datum^c

eukaryota in feces datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003265

is equivalent to: feces microbiology datum^c and (is about^op some Eukaryota^c)
has super-classes: feces microbiology datum^c

eukaryota in induced sputum datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003269

is equivalent to: induced sputum microbiology datum^c and (is about^op some Eukaryota^c)
has super-classes: induced sputum microbiology datum^c

eukaryota in lung datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003273

is equivalent to: lung microbiology datum^c and (is about^op some Eukaryota^c)
has super-classes: lung microbiology datum^c

eukaryota in nasopharyngeal or oropharyngeal swab datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003276

is equivalent to: nasopharyngeal or oropharyngeal swab microbiology datum^c and (is about^op some Eukaryota^c)
has super-classes: nasopharyngeal or oropharyngeal swab microbiology datum^c

eukaryota in placental blood datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003383

is equivalent to: placental blood microbiology datum^c and (is about^op some Eukaryota^c)
has super-classes: eukaryota in blood datum^c; placental blood microbiology datum^c

eukaryota in pleural fluid datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003279

is equivalent to: pleural fluid microbiology datum^c and (is about^op some Eukaryota^c)
has super-classes: pleural fluid microbiology datum^c

eukaryota in umbilical cord blood datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003281

is equivalent to: umbilical cord blood microbiology datum^c and (is about^op some Eukaryota^c)
has super-classes: umbilical cord blood microbiology datum^c; eukaryota in blood datum^c

eukaryota in urine datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003267

is equivalent to: urine microbiology datum^c and (is about^op some Eukaryota^c)
has super-classes: urine microbiology datum^c

evaluant role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000067

has super-classes: role^c; characteristic of^op some material entity^c; realized in^op only assay^c
has sub-classes: magnetic resonance imaging evaluant role^c

exclusion subset ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000010

has super-classes: subset ontology module^c

excreta^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000174

has super-classes: organism substance^c
has sub-classes: feces^c, urine^c

expectation maximization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200053

has super-classes: probabilistic algorithm^c

expected value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000083

has super-classes: quantitative confidence value^c

experimental validity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000143

has super-classes: validity^c
has sub-classes: external validity^c, internal validity^c, statistical conclusion validity^c

experimental_feature^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/SO_0001410

has super-classes: region^c
has sub-classes: assembly^c

experimentally modified cell in vitro^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000578

This class has been re-labeled to imply reference only to in vitro experimentally modified cells, similarly, the definition has been slightly updated to reflect this. 'experimentally modified cell' refers only to cells in vitro, and not modified in vivo/in environment cells. There is currently no class representing unmodified in vitro cells (other than the parent 'cell in vitro'), or a class representing modified native cells. More granular subclassing of experimentally modified cell can be found in ReO. MHB 1.12.12

has super-classes: cell in vitro^c
has sub-classes: cultured cell^c

expert elicitation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000265

has super-classes: uncertainty analysis^c

exponential base^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200151

has super-classes: mathematical feature^c; has_feature_value^dp some float

exponential distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000125

has super-classes: continuous probability distribution^c

exponential transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200095

has super-classes: normalization data transformation^c; achieves_planned_objective^op some data normalization objective^c

external driving forces uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000351

has super-classes: input uncertainty^c

external import ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000011

has super-classes: import ontology module^c

external validity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000153

has super-classes: experimental validity^c
has sub-classes: ecological validity^c

extract^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000423

has super-classes: processed material^c; is_specified_output_of^op some extraction^c
has sub-classes: nucleic acid extract^c

extraction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302884

has super-classes: material component separation^c; achieves_planned_objective^op some separation into different composition objective^c
has sub-classes: nucleic acid extraction^c

extraction date^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003081

has super-classes: time measurement datum^c

extraction duration time^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003082

has super-classes: time measurement datum^c

Extraction of Differential Gene Expression software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000164

has super-classes: software^c; has part^op some differential expression analysis objective^c

F distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000003

has super-classes: continuous probability distribution^c

F test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000102

has super-classes: statistical hypothesis test^c

face validity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000163

has super-classes: content validity^c

factor analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000180

has super-classes: multivariate analysis^c

false discovery rate correction method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200163

is equivalent to: has_specified_output^op some q-value^c
has super-classes: dataset creating^c; multiple testing correction method^c; has_specified_input^op some p-value^c; achieves_planned_objective^op some multiple testing correction objective^c
has sub-classes: Benjamini and Hochberg false discovery rate correction method^c, Benjamini and Yekutieli false discovery rate correction method^c

family wise error rate correction method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200073

is equivalent to: has_specified_output^op some FWER adjusted p-value^c
has super-classes: dataset creating^c; multiple testing correction method^c; achieves_planned_objective^op some multiple testing correction objective^c
has sub-classes: Holm-Bonferroni family-wise error rate correction method^c, Westfall and Young family wise error rate correction^c

feature extraction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001028

has super-classes: data transformation^c; has_specified_input^op some image^c; has_specified_output^op some data item^c; achieves_planned_objective^op some feature extraction objective^c

feature extraction objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200005

has super-classes: data transformation objective^c

feces^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001988

has super-classes: excreta^c

feces assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003237

is equivalent to: assay^c and ((realizes^op some evaluant role^c and (role of^op some feces specimen^c)) and (has_specified_input^op some feces specimen^c and (has role^op some evaluant role^c)))
has super-classes: assay^c
has sub-classes: feces microbiology assay^c

feces assay datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003245

is equivalent to: data item^c and (is_specified_output_of^op some feces assay^c)
has super-classes: data item^c
has sub-classes: feces microbiology datum^c

feces microbiology assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003039

has super-classes: feces assay^c; organism detection assay^c; (realizes^op some evaluant role^c and (role of^op some feces specimen^c)) and (has_specified_input^op some feces specimen^c and (has role^op some evaluant role^c)); (realizes^op some measurand role^c and (characteristic of^op some organism^c)) and (has_specified_input^op some organism^c)

feces microbiology datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003246

is equivalent to: organism detection datum^c and (is_specified_output_of^op some feces microbiology assay^c)
has super-classes: organism detection datum^c; feces assay datum^c
has sub-classes: bacteria in feces datum^c, eukaryota in feces datum^c, virus in feces datum^c

feces specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002503

is equivalent to: (specimen^c and (is_specified_output_of^op some specimen collection process^c) and (derives from^op some feces^c)) and (specimen^c and (is_specified_output_of^op some collecting specimen from organism^c))
has super-classes: specimen from organism^c

fiat object part^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000024

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: material entity^c

figure^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000308

has super-classes: information content entity^c
has sub-classes: diagram^c, image^c

file merge^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002566

has super-classes: data transformation^c

find exemplars-filter for clear-cut case^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000300

definition to be confirmed

has super-classes: uncertainty response activity^c

Fisher's exact test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200176

has super-classes: statistical hypothesis test^c; achieves_planned_objective^op some statistical hypothesis test objective^c

fixed effect^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000096

has super-classes: statistical effect^c

fluorescent reporter intensity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000010

has super-classes: measurement datum^c

Forest plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000174

has super-classes: graph^c

frequency distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000068

has super-classes: probability distribution^c

Friedman test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000239

has super-classes: Durbin test^c

full karyotype information^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002771

has super-classes: karyotype information^c

function^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000034

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: disposition^c
has sub-classes: consume data function^c, information processor function^c, measure function^c
is in domain of: function of^op
is in range of: has function^op

Funnel plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000112

has super-classes: scatter plot^c

fuzzy clustering objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000653

has super-classes: data transformation objective^c

FWER adjusted p-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001265

has super-classes: quantitative confidence value^c; error corrected data set^c

Galbraith plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000263

has super-classes: scatter plot^c

gamma distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000004

has super-classes: continuous probability distribution^c

gas chromatography mass spectrometry^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200199

has super-classes: mass spectrometry analysis^c; achieves_planned_objective^op some spectrum analysis objective^c

gating^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200077

has super-classes: partitioning data transformation^c; data vector reduction data transformation^c; achieves_planned_objective^op some inferential statistical data analysis objective^c; achieves_planned_objective^op some data vector reduction objective^c; achieves_planned_objective^op some partitioning objective^c
has sub-classes: cytometry analysis by automated gating^c, cytometry analysis by manual gating^c

gene list^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000118

has super-classes: data set^c

gene list visualization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200191

has super-classes: data visualization^c; has_specified_output^op some table^c; has_specified_input^op only gene list^c

Gene Set Enrichment Analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000147

has super-classes: inferential statistical data analysis^c

generalized family wise error rate correction method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200160

has super-classes: multiple testing correction method^c; achieves_planned_objective^op some multiple testing correction objective^c

generated ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000014

has super-classes: ontology module^c
has sub-classes: template generated ontology module^c

generation of missing data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000177

has super-classes: planned process^c; realizes^op some concretizes^op some data sampling design^c

generically dependent continuant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000031

is defined by: http://purl.obolibrary.org/obo/bfo.owl

A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.

has super-classes: continuant^c
has sub-classes: information content entity^c, region^c
is in domain of: is concretized as^op
is in range of: concretizes^op
is disjoint with: independent continuant^c, specifically dependent continuant^c

genetic alteration information^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001364

has super-classes: genetic characteristics information^c
has sub-classes: allele information^c

genetic characteristics information^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001404

has super-classes: data item^c; is about^op some region^c and (is concretized as^op some characteristic of^op some nucleic acid^c and (part of^op some organism^c))
has sub-classes: genetic alteration information^c, genetic population background information^c, genotype information^c, human leukocyte antigen mismatch count^c, karyotype information^c

genetic modification design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001460

has super-classes: intervention design^c; has part^op some biological feature identification objective^c; has part^op some study design independent variable^c and (is about^op some study intervention^c and genetic transformation^c)

genetic population background information^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001225

has super-classes: genetic characteristics information^c; part of^op some genotype information^c

genetic transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600043

has super-classes: material processing^c; has_specified_output^op some genetically modified material^c; achieves_planned_objective^op some genetic transformation objective^c

genetic transformation objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001153

has super-classes: material transformation objective^c

genetically modified material^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001151

is equivalent to: genetically modified organism^c or (cell^c and (is_specified_output_of^op some genetic transformation^c))
has super-classes: processed material^c
has sub-classes: genetically modified organism^c

genetically modified organism^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302859

is equivalent to: organism^c and (is_specified_output_of^op some genetic transformation^c)
has super-classes: genetically modified material^c; organism^c

genome coverage^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001939

has super-classes: transformed data item^c; is about^op some assembly^c; is_specified_output_of^op some sequence assembly process^c

genotype information^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001305

has super-classes: genetic characteristics information^c; (has part^op some genetic population background information^c) and (has part^op some genetic alteration information^c)
has sub-classes: wild type organism genotype information^c

geometric distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000145

has super-classes: negative binomial distribution^c

geometric mean calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200001

A geometric mean calculation is a descriptive statistics calculation in which the mean is calculated by taking the nth root of the product of all of the observations in a data (n being the number of all observations).

has super-classes: dataset creating^c; center calculation data transformation^c; (has_specified_output^op some center value^c) and (achieves_planned_objective^op some center calculation objective^c); achieves_planned_objective^op some descriptive statistical calculation objective^c

GLobal Identifier of Target Regions software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000166

has super-classes: software^c; is concretized as^op some realized in^op some peak calling^c

global modularity calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200054

has super-classes: network graph quality calculation^c

global sensitivity analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000261

has super-classes: sensitivity analysis^c

goodness of fit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000030

has super-classes: inferential statistical data analysis^c

graeco latin square design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500012

has super-classes: randomized complete block design^c

graph^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000038

has super-classes: diagram^c
has sub-classes: Forest plot^c, LD plot^c, Lineweaver-Burk plot^c, Q-Q plot^c, Venn diagram^c, bar chart^c, bean plot^c, box and whisker plot^c, contour plot^c, dendrogram^c, density plot^c, dot plot^c, heatmap^c, histogram^c, line graph^c, pedigree chart^c, pie chart^c, receiver operational characteristics curve^c, scatter plot^c, violin plot^c

group assignment^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600015

has super-classes: planned process^c; has_specified_input^op some organism^c; has_specified_output^op some role^c and (characteristic of^op some organism^c)
has sub-classes: group randomization^c

group randomization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302900

has super-classes: group assignment^c

grouped bar chart^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000267

has super-classes: bar chart^c

growth condition intervention design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000985

has super-classes: intervention design^c; has part^op some study design independent variable^c and (is about^op some study intervention^c); has part^op some study design independent variable^c and (is about^op some growth environment^c)

growth environment^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000997

has super-classes: material entity^c

half life datum (t 1/2)^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001171

has super-classes: time measurement datum^c; has measurement unit label^op some time unit^c
has sub-classes: half life of binding datum^c

half life of binding datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001583

is equivalent to: binding constant^c and (half life datum (t 1/2)^c and (is about^op some binding^c))
has super-classes: binding constant^c; half life datum (t 1/2)^c

half maximal effective concentration (EC50)^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001180

has super-classes: scalar measurement datum^c; has measurement unit label^op some concentration unit^c; is about^op some dose response curve^c
has sub-classes: EC50 binding datum^c

half maximal inhibitory concentration (IC50)^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001191

has super-classes: scalar measurement datum^c; has measurement unit label^op some concentration unit^c; is about^op some dose response curve^c
has sub-classes: IC50 binding datum^c

handedness^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002201

Adapted from Wikipedia and the birnlex term that is dbxref'd. Added on behalf of OBI at March 2010 workshop.

has super-classes: organismal quality^c

handedness categorical measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000976

has super-classes: categorical measurement datum^c; is quality measurement of^op some handedness^c; has category label^op some { right handed , ambidexterous , left handed }

heatmap^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000180

has super-classes: graph^c

hierarchical clustering^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200042

has super-classes: dataset creating^c; class discovery data transformation^c; (has_specified_output^op some clustered data set^c) and (achieves_planned_objective^op some class discovery objective^c)
has sub-classes: agglomerative hierarchical clustering^c, divisive hierarchical clustering^c

hierarchical linear model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000020

has super-classes: statistical model^c

hierarchical tree^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000217

has super-classes: mathematic graph^c

high certainty level^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000369

definition to be confirmed

has super-classes: uncertainty degree level^c

highest uncertainty degree^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000371

definition to be confirmed

has super-classes: uncertainty degree level^c

histogram^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000179

has super-classes: graph^c

histogram distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000210

has super-classes: probability distribution^c

history^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000182

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: process^c
is disjoint with: process profile^c

Holm-Bonferroni family-wise error rate correction method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200066

has super-classes: family wise error rate correction method^c; has_specified_input^op some p-value^c; has_specified_output^op some FWER adjusted p-value^c; achieves_planned_objective^op some multiple testing correction objective^c

homogeneous polynomial transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200020

has super-classes: polynomial transformation^c

hospital unit shift rate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000232

has super-classes: rate^c

Hotelling T2 distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000132

has super-classes: probability distribution^c

human leukocyte antigen mismatch count^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003594

has super-classes: genetic characteristics information^c

hyper graeco latin square design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500013

has super-classes: randomized complete block design^c

hypergeometric distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000060

has super-classes: discrete probability distribution^c

hyperlog transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200008

has super-classes: normalization data transformation^c; achieves_planned_objective^op some data normalization objective^c

hypothesis driven investigation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000355

has super-classes: investigation^c

hypothesis generating investigation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000356

has super-classes: investigation^c

IC50 binding datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003144

is equivalent to: quantitative binding datum^c and (half maximal inhibitory concentration (IC50)^c and (is about^op some binding^c))
has super-classes: half maximal inhibitory concentration (IC50)^c; quantitative binding datum^c
has sub-classes: equilibrium dissociation constant (KD) approximated by IC50^c

identity uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000363

classification to be confirmed

has super-classes: subjective uncertainty^c
has sub-classes: uncertainty about gender role^c, uncertainty about long-term goal^c, uncertainty about value system^c

image^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000101

has super-classes: figure^c
has sub-classes: photograph^c

image data set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003327

has super-classes: data set^c; is about^op some entity^c
has sub-classes: computed image data set^c, magnetic resonance image data set^c, raw image data set^c

image data set analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003355

has super-classes: data transformation^c; has_specified_input^op some image data set^c
has sub-classes: raw magnetic resonance image data set reconstruction^c

imaging assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000185

has super-classes: assay^c; has_specified_output^op some image^c
has sub-classes: magnetic resonance imaging assay^c

immaterial entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000141

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: independent continuant^c
has sub-classes: continuant fiat boundary^c, site^c, spatial region^c
is in range of: has 2D boundary^op
is disjoint with: material entity^c

imperfect model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000317

definition to be confirmed

has super-classes: uncertainty arise condition^c

import ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000005

has super-classes: subset ontology module^c
has sub-classes: external import ontology module^c

Incidence rate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000052

has super-classes: derived data from inferential statistical analysis^c; is_specified_output_of^op some inferential statistical data analysis^c

incomplete knowledge^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000315

definition to be confirmed

has super-classes: uncertainty arise condition^c

independent component analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000249

has super-classes: inferential statistical data analysis^c

independent continuant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000004

is defined by: http://purl.obolibrary.org/obo/bfo.owl

A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.

has super-classes: continuant^c
has sub-classes: immaterial entity^c, material entity^c
is in domain of: has disposition^op, has function^op, has role^op, located in^op
is in range of: located in^op, occurs in^op
is disjoint with: specifically dependent continuant^c, generically dependent continuant^c

independent variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000131

has super-classes: statistical variable^c; is concretized as^op some realized in^op some inferential statistical data analysis^c

individual difference^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000276

definition to be confirmed

has super-classes: uncertainty arise condition^c

induced sputum assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003234

is equivalent to: assay^c and ((realizes^op some evaluant role^c and (role of^op some induced sputum specimen^c)) and (has_specified_input^op some induced sputum specimen^c and (has role^op some evaluant role^c)))
has super-classes: assay^c
has sub-classes: induced sputum microbiology assay^c

induced sputum assay datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003249

is equivalent to: data item^c and (is_specified_output_of^op some induced sputum assay^c)
has super-classes: data item^c
has sub-classes: induced sputum microbiology datum^c

induced sputum microbiology assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003242

has super-classes: induced sputum assay^c; organism detection assay^c; (realizes^op some evaluant role^c and (role of^op some induced sputum specimen^c)) and (has_specified_input^op some induced sputum specimen^c and (has role^op some evaluant role^c))

induced sputum microbiology datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003251

is equivalent to: organism detection datum^c and (is_specified_output_of^op some induced sputum microbiology assay^c)
has super-classes: organism detection datum^c; induced sputum assay datum^c
has sub-classes: bacteria in induced sputum datum^c, eukaryota in induced sputum datum^c, virus in induced sputum datum^c

induced sputum specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002746

has super-classes: sputum specimen^c; specimen^c and (is_specified_output_of^op some specimen collection process^c) and (derives from^op some sputum^c); specimen^c and (is_specified_output_of^op some collecting specimen from organism^c)

inductive reasoning^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000343

has super-classes: drawing a conclusion based on data^c

inferential statistical data analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000121

is equivalent to: achieves_planned_objective^op some inferential statistical data analysis objective^c
has super-classes: statistical data analysis^c; has_specified_input^op some data set^c
has sub-classes: Bayesian analysis^c, Gene Set Enrichment Analysis^c, Kaplan Meier^c, Likelihood-ratio test^c, Mendelian randomization^c, class discovery data transformation^c, class prediction data transformation^c, cochran-armitage test^c, correlation statistical analysis^c, covariation^c, curve fitting data transformation^c, decision tree building data transformation^c, differential expression analysis using LIMMA linear models for microarry data^c, discriminant analysis^c, goodness of fit^c, independent component analysis^c, intent-to-treat analysis^c, mcnemar's test^c, multiple testing correction method^c, multivariate analysis^c, peak calling^c, proportional hazards model estimation^c, regression analysis method^c, significance analysis of microarrays^c, statistical association^c, statistical hypothesis test^c, statistical model validation^c, univariate analysis^c

inferential statistical data analysis objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000124

has super-classes: data transformation objective^c

information content entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000030

has super-classes: generically dependent continuant^c; is about^op some entity^c
has sub-classes: conclusion based on data^c, contingency table^c, data item^c, datum label^c, directive information entity^c, document^c, eMedical record^c, figure^c, mathematic graph^c, measurement scale^c, numerical data value^c, probability distribution^c, testable hypothesis^c, textual entity^c, value specification^c

information processor function^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000392

has super-classes: function^c; has part^op some measure function^c; has part^op some consume data function^c

inherent randomness of nature^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000319

has super-classes: uncertainty arise condition^c

input gene sequence start site^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002977

has super-classes: sequence data^c

input gene sequence stop site^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002978

has super-classes: sequence data^c

input protein sequence start site^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002975

has super-classes: sequence data^c

input protein sequence stop site^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002976

has super-classes: sequence data^c

input uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000350

definition and classification to be confirmed

has super-classes: uncertainty^c
has sub-classes: external driving forces uncertainty^c, system data uncertainty^c

insecticide resistance datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003063

has super-classes: data item^c

instability of event (episodic, self-reversing, spreading)^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000278

definition to be confirmed

has super-classes: uncertainty arise condition^c

institutional uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000359

classification to be confirmed

has super-classes: societal uncertainty^c

intent-to-treat analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000240

has super-classes: inferential statistical data analysis^c

inter-rater reliability objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200091

has super-classes: data transformation objective^c

interaction effect^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000097

has super-classes: statistical effect^c

intermediate certainty level^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000370

definition to be confirmed

has super-classes: uncertainty degree level^c

internal validity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000152

has super-classes: experimental validity^c

interquartile range^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000072

has super-classes: quantitative confidence value^c

interquartile-range calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200122

has super-classes: spread calculation data transformation^c; achieves_planned_objective^op some descriptive statistical calculation objective^c; achieves_planned_objective^op some spread calculation objective^c

interval scale^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000090

has super-classes: measurement scale^c

interval-scale variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000202

has super-classes: continuous variable^c

intervening variable specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000043

has super-classes: directive information entity^c

intervention design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000115

is equivalent to: study design^c and (has part^op some study design independent variable^c and (is about^op some study intervention^c))
has super-classes: study design^c
has sub-classes: compound treatment design^c, genetic modification design^c, growth condition intervention design^c, post-transcriptional modification design^c, randomized complete block design^c, repeated measure design^c, sequential design^c, stimulus or stress design^c

intra subgraph connectivity calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200145

has super-classes: network subgraph quality calculation^c

intraclass correlation coefficient^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000084

has super-classes: quantitative confidence value^c

investigation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000066

has super-classes: planned process^c; has part^op some documenting^c; has part^op some drawing a conclusion based on data^c; has part^op some study design execution^c; has part^op some planning^c and (has_specified_output^op some study design^c)
has sub-classes: hypothesis driven investigation^c, hypothesis generating investigation^c

irreducible ignorance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000344

has super-classes: recognized ignorance^c

jackknifing method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200034

has super-classes: statistical model validation^c; achieves_planned_objective^op some cross validation objective^c

K-fold cross validation method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200032

has super-classes: statistical model validation^c; achieves_planned_objective^op some cross validation objective^c

k-means clustering^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200041

has super-classes: dataset creating^c; partitioning data transformation^c; class discovery data transformation^c; (has_specified_output^op some clustered data set^c) and (achieves_planned_objective^op some class discovery objective^c); achieves_planned_objective^op some inferential statistical data analysis objective^c; achieves_planned_objective^op some partitioning objective^c

k-nearest neighbors^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000727

has super-classes: dataset creating^c; partitioning data transformation^c; class discovery data transformation^c; (has_specified_output^op some clustered data set^c) and (achieves_planned_objective^op some class discovery objective^c); achieves_planned_objective^op some inferential statistical data analysis objective^c; achieves_planned_objective^op some partitioning objective^c

Kaplan Meier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200088

has super-classes: inferential statistical data analysis^c; survival analysis data transformation^c; achieves_planned_objective^op some inferential statistical data analysis objective^c; achieves_planned_objective^op some survival analysis objective^c

kappa statistic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000109

has super-classes: test statistic^c
has sub-classes: cohen's kappa measurement^c

karyotype information^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002769

has super-classes: genetic characteristics information^c
has sub-classes: full karyotype information^c, partial karyotype information^c

Kendall's correlation coefficient^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000240

has super-classes: correlation coefficient^c

knuth shuffle^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000184

has super-classes: random permutation^c

Kolmogorov-Smirnov one sample test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000242

has super-classes: Kolmogorov–Smirnov test^c

Kolmogorov-Smirnov two sample test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000031

has super-classes: Kolmogorov–Smirnov test^c

Kolmogorov–Smirnov test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000241

has super-classes: non-parametric test^c
has sub-classes: Kolmogorov-Smirnov one sample test^c, Kolmogorov-Smirnov two sample test^c

Kriging^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000182

has super-classes: regression analysis method^c

kurtosis calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200124

has super-classes: spread calculation data transformation^c; achieves_planned_objective^op some descriptive statistical calculation objective^c; achieves_planned_objective^op some spread calculation objective^c

labile and spreading symptom and side effect^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000285

definition to be confirmed

has super-classes: uncertainty arise condition^c

lack of causal model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000282

definition to be confirmed

has super-classes: uncertainty arise condition^c

lack of fit error^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000099

has super-classes: statistical error^c

lack of funding^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000290

definition to be confirmed

has super-classes: uncertainty arise condition^c

lack of information for comparison^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000284

definition to be confirmed

has super-classes: uncertainty arise condition^c

lack of institutional security^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000292

definition to be confirmed

has super-classes: uncertainty arise condition^c

latin square design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500011

has super-classes: randomized complete block design^c

latitude coordinate measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001620

has super-classes: measurement datum^c

LD plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000147

has super-classes: graph^c

least square regression^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000250

has super-classes: regression analysis method^c

leave one out cross validation method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200033

has super-classes: statistical model validation^c; achieves_planned_objective^op some cross validation objective^c

legal uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000356

classification to be confirmed

has super-classes: uncertainty^c

length^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000122

Length often refers to the longer or longest dimension of an object, however, this is not always true. See https://github.com/pato-ontology/pato/issues/337 for full discussion.

has super-classes: physical object quality^c

length measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000408

has super-classes: scalar measurement datum^c; has measurement unit label^op some length unit^c; is quality measurement of^op some length^c
has sub-classes: altitude measurement datum^c, mid-upper arm circumference datum^c, tissue section thickness^c

length unit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000001

has super-classes: measurement unit label^c

levene's test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000032

has super-classes: statistical hypothesis test^c; achieves_planned_objective^op some inferential statistical data analysis objective^c; achieves_planned_objective^op some statistical hypothesis test objective^c

likelihood ratio^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000118

has super-classes: quantitative confidence value^c
has sub-classes: negative likelihood ratio^c, positive likelihood ratio^c

Likelihood-ratio test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000861

has super-classes: inferential statistical data analysis^c; achieves_planned_objective^op some inferential statistical data analysis objective^c

limited understanding^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000316

definition to be confirmed

has super-classes: uncertainty arise condition^c

line graph^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000573

has super-classes: graph^c
has sub-classes: RT-PCR standard curve^c, dose response curve^c, real time quantitative pcr plot^c

linear discriminant functional analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200101

has super-classes: dataset creating^c; class prediction data transformation^c; discriminant analysis^c; class discovery data transformation^c; (has_specified_output^op some classified data set^c) and (achieves_planned_objective^op some class prediction objective^c); has_specified_output^op some clustered data set^c

Lineweaver-Burk plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000186

has super-classes: graph^c

linlog transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200021

has super-classes: normalization data transformation^c; achieves_planned_objective^op some data normalization objective^c

local sensitivity analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000260

has super-classes: sensitivity analysis^c

loess fitting^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200116

has super-classes: curve fitting data transformation^c; achieves_planned_objective^op some curve fitting objective^c

loess global transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200023

has super-classes: loess transformation^c
has sub-classes: loess global transformation one-channel^c, loess global transformation two-channel^c

loess global transformation one-channel^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200013

has super-classes: loess global transformation^c

loess global transformation two-channel^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200015

has super-classes: loess global transformation^c

loess group transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200024

has super-classes: loess transformation^c
has sub-classes: loess group transformation one-channel^c, loess group transformation two-channel^c

loess group transformation one-channel^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200018

has super-classes: loess group transformation^c

loess group transformation two-channel^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200019

has super-classes: loess group transformation^c

loess scale group transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200025

has super-classes: scaling data transformation^c; achieves_planned_objective^op some scaling objective^c; immediately preceded by^op some loess group transformation^c
has sub-classes: loess scale group transformation one-channel^c, loess scale group transformation two-channel^c

loess scale group transformation one-channel^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200010

has super-classes: loess scale group transformation^c

loess scale group transformation two-channel^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200012

has super-classes: loess scale group transformation^c

loess transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200071

has super-classes: normalization data transformation^c; achieves_planned_objective^op some data normalization objective^c
has sub-classes: loess global transformation^c, loess group transformation^c

log base^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200141

has super-classes: mathematical feature^c; has_feature_value^dp some float

log-log curve fitting^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200004

has super-classes: curve fitting data transformation^c; achieves_planned_objective^op some curve fitting objective^c

log-normal distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000008

has super-classes: continuous probability distribution^c

log-rank test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000243

has super-classes: non-parametric test^c

log2 transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000189

has super-classes: logarithmic transformation^c

logarithmic transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200094

has super-classes: normalization data transformation^c; achieves_planned_objective^op some data normalization objective^c
has sub-classes: log2 transformation^c

logical transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200011

has super-classes: normalization data transformation^c; achieves_planned_objective^op some data normalization objective^c

logistic-log curve fitting^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200002

has super-classes: curve fitting data transformation^c; achieves_planned_objective^op some curve fitting objective^c

logit regression^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000086

has super-classes: regression analysis method^c

logit-log curve fitting^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200003

has super-classes: curve fitting data transformation^c; achieves_planned_objective^op some curve fitting objective^c

loglinear analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000033

has super-classes: statistical hypothesis test^c; achieves_planned_objective^op some inferential statistical data analysis objective^c; achieves_planned_objective^op some statistical hypothesis test objective^c

longitude coordinate measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001621

has super-classes: measurement datum^c

longitudinal data analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200082

has super-classes: data transformation^c; achieves_planned_objective^op some correlation study objective^c

low uncertainty level^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000373

definition to be confirmed

has super-classes: uncertainty degree level^c

lowess global transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001481

has super-classes: lowess transformation^c

lowess group transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001474

has super-classes: lowess transformation^c

lowess transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001477

has super-classes: normalization data transformation^c; achieves_planned_objective^op some data normalization objective^c
has sub-classes: lowess global transformation^c, lowess group transformation^c

lung^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002048

has super-classes: organ^c; endoderm-derived structure^c

lung assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003235

is equivalent to: assay^c and ((realizes^op some evaluant role^c and (role of^op some lung specimen^c)) and (has_specified_input^op some lung specimen^c and (has role^op some evaluant role^c)))
has super-classes: assay^c
has sub-classes: lung microbiology assay^c

lung microbiology assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003282

has super-classes: lung assay^c; organism detection assay^c; (realizes^op some evaluant role^c and (role of^op some lung specimen^c)) and (has_specified_input^op some lung specimen^c and (has role^op some evaluant role^c))

lung microbiology datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003256

is equivalent to: organism detection datum^c and (is_specified_output_of^op some lung microbiology assay^c)
has super-classes: organism detection datum^c
has sub-classes: bacteria in lung datum^c, eukaryota in lung datum^c, virus in lung datum^c

lung specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002534

is equivalent to: (specimen^c and (is_specified_output_of^op some specimen collection process^c) and (derives from^op some tissue^c and (part of^op some lung^c))) and (specimen^c and (is_specified_output_of^op some collecting specimen from organism^c))
has super-classes: specimen from organism^c

MA plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000040

has super-classes: scatter plot^c

MA transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200150

has super-classes: normalization data transformation^c; achieves_planned_objective^op some data normalization objective^c

macromolecule^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_33839

has super-classes: molecular entity^c
has sub-classes: nucleic acid^c

magnetic resonance image data set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003328

is equivalent to: image data set^c and (is about^op some magnetic resonance imaging participant^c)
has super-classes: image data set^c
has sub-classes: raw magnetic resonance image data set^c, reconstructed magnetic resonance image data set^c

magnetic resonance imaging assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002985

has super-classes: imaging assay^c; (realizes^op some function^c and (characteristic of^op some NMR instrument^c)) and (has_specified_input^op some NMR instrument^c); realizes^op some concretizes^op some magnetic resonance pulse sequence protocol^c; has_specified_input^op some has role^op some magnetic resonance imaging evaluant role^c

magnetic resonance imaging evaluant role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003330

is equivalent to: evaluant role^c and (realized in^op some magnetic resonance imaging assay^c)
has super-classes: evaluant role^c

magnetic resonance imaging participant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003329

is equivalent to: material entity^c and (has characteristic^op some magnetic resonance imaging evaluant role^c)
has super-classes: material entity^c

magnetic resonance pulse sequence protocol^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003332

has super-classes: protocol^c

main release ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000003

has super-classes: ontology module^c

maintaining cell culture^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600024

has super-classes: material maintenance^c; has_specified_input^op some cultured cell population^c; has_specified_input^op some culture medium^c or cell freezing medium^c; has_specified_output^op some cultured cell population^c; achieves_planned_objective^op some material maintenance objective^c

manhattan plot for gwas^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000256

has super-classes: scatter plot^c

mann-whitney U test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000103

has super-classes: non-parametric test^c

MANOVA^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000181

has super-classes: multivariate analysis^c

mass^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000125

For any biological use of PATO, the concept that should be used is 'mass' and not 'weight'. For example, increased weight of an organism.

has super-classes: physical quality^c

mass measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000414

has super-classes: scalar measurement datum^c; (has measurement unit label^op only mass unit^c) and (is quality measurement of^op only mass^c)

mass spectrometry analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200085

is equivalent to: achieves_planned_objective^op some spectrum analysis objective^c
has super-classes: data transformation^c
has sub-classes: centroid mass spectrum analysis^c, characteristic path length calculation^c, continuum mass spectrum analysis^c, gas chromatography mass spectrometry^c

mass unit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000002

has super-classes: measurement unit label^c

material anatomical entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000465

has super-classes: material entity^c
has sub-classes: anatomical cluster^c, anatomical structure^c, organism substance^c

material combination^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000652

is equivalent to: achieves_planned_objective^op some material combination objective^c
has super-classes: material processing^c; has_specified_input^op some material entity^c; has_specified_output^op some material entity^c
has sub-classes: adding a material entity into a target^c

material combination objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000686

has super-classes: material transformation objective^c
has sub-classes: adding material objective^c

material component separation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600014

is equivalent to: achieves_planned_objective^op some material separation objective^c
has super-classes: material processing^c; has_specified_input^op some material entity^c; has_specified_output^op some material entity^c
has sub-classes: extraction^c

material difficult to obtain^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000277

definition to be confirmed

has super-classes: uncertainty arise condition^c

material entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000040

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: independent continuant^c
has sub-classes: cell^c, fiat object part^c, growth environment^c, magnetic resonance imaging participant^c, material anatomical entity^c, material information bearer^c, molecular entity^c, object^c, object aggregate^c, organism^c, processed material^c, protein-containing material entity^c, specimen^c
is in domain of: has 2D boundary^op
is disjoint with: immaterial entity^c

material information bearer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000178

is equivalent to: material entity^c and (has characteristic^op some concretizes^op some information content entity^c)
has super-classes: material entity^c
has sub-classes: random access memory^c

material maintenance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000838

is equivalent to: achieves_planned_objective^op some material maintenance objective^c
has super-classes: planned process^c
has sub-classes: maintaining cell culture^c

material maintenance objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000806

has super-classes: objective specification^c

material processing^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000094

is equivalent to: achieves_planned_objective^op some material transformation objective^c
has super-classes: planned process^c; has_specified_output^op some processed material^c; has_specified_input^op only material entity^c
has sub-classes: establishing cell culture^c, genetic transformation^c, material combination^c, material component separation^c, passage process^c

material sample^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000747

is equivalent to: material entity^c and (has role^op some material sample role^c)
has super-classes: specimen^c
has sub-classes: sample from organism^c

material sample role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000740

has super-classes: specimen role^c

material separation objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000639

is equivalent to: portioning objective^c or separation into different composition objective^c
has super-classes: material transformation objective^c
has sub-classes: portioning objective^c, separation into different composition objective^c

material to be added role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000319

has super-classes: role^c

material transformation objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000456

has super-classes: objective specification^c
has sub-classes: genetic transformation objective^c, material combination objective^c, material separation objective^c

mathematic graph^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000216

has super-classes: information content entity^c
has sub-classes: bipartite graph^c, directed graph^c, hierarchical tree^c, relational graph^c, undirected graph^c

mathematical feature^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200140

has super-classes: data transformation^c
has sub-classes: exponential base^c, log base^c, number of variables^c, polynomial degree^c

Matthews correlation coefficient^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000524

has super-classes: correlation coefficient^c

mcnemar's test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000034

has super-classes: inferential statistical data analysis^c

McNemar's test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000247

has super-classes: chi square test^c

mean centering^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200029

has super-classes: normalization data transformation^c; achieves_planned_objective^op some data normalization objective^c

mean-centered data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302868

is equivalent to: is_specified_output_of^op some mean centering^c
has super-classes: normalized data set^c

measurand role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002444

has super-classes: role^c; role of^op some material entity^c

measure function^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000453

has super-classes: function^c; function of^op some processed material^c; realized in^op only has_specified_output^op some measurement datum^c

measured expression level^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000101

has super-classes: measurement datum^c

measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000109

has super-classes: data item^c
has sub-classes: 3D structural organization datum^c, categorical measurement datum^c, dose^c, fluorescent reporter intensity^c, latitude coordinate measurement datum^c, longitude coordinate measurement datum^c, measured expression level^c, number of live births^c, number of lost events computer^c, number of lost events electronic^c, number of particles in subset^c, number of pregnancies^c, parameter threshold^c, ratio of collected to emitted light^c, scalar measurement datum^c, sequence data^c, sequence read length measurement datum^c, specimen harvest quantity^c, spike train datum^c, survival rate^c, time stamped measurement datum^c

measurement device^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000832

is equivalent to: device^c and (has function^op some measure function^c)
has super-classes: device^c
has sub-classes: NMR instrument^c

measurement error^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000314

definition to be confirmed

has super-classes: uncertainty arise condition^c

measurement scale^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000011

has super-classes: information content entity^c; is about^op some measurement datum^c
has sub-classes: interval scale^c, nominal scale^c, ordinal scale^c, ratio scale^c

measurement uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000340

has super-classes: statistical uncertainty^c

measurement unit label^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000003

has super-classes: datum label^c
has sub-classes: concentration unit^c, length unit^c, mass unit^c, temperature unit^c, time unit^c

median^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000114

has super-classes: center value^c; is_specified_output_of^op some median calculation^c

median calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200119

has super-classes: dataset creating^c; center calculation data transformation^c; (has_specified_output^op some center value^c) and (achieves_planned_objective^op some center calculation objective^c); achieves_planned_objective^op some descriptive statistical calculation objective^c

median centering^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200030

has super-classes: normalization data transformation^c; achieves_planned_objective^op some data normalization objective^c

mediating variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000111

has super-classes: statistical variable^c

medical test sensitivity disposition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000235

has super-classes: sensitivity disposition^c

Mendelian randomization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000021

has super-classes: inferential statistical data analysis^c

merged aligned sequence data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002581

has super-classes: transformed data item^c; sequence data^c; is_specified_output_of^op some file merge^c

merging objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200189

has super-classes: data transformation objective^c

methodology testing objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000208

has super-classes: objective specification^c
has sub-classes: software testing objective^c

mhc binding prediction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200059

has super-classes: sequence analysis data transformation^c; achieves_planned_objective^op some sequence analysis objective^c

mid-upper arm circumference datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003416

has super-classes: length measurement datum^c; is quality measurement of^op some length^c and (quality of^op some arm^c)

milk^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001913

has super-classes: protein-containing material entity^c; bodily fluid^c

milk assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003236

is equivalent to: assay^c and ((realizes^op some evaluant role^c and (role of^op some milk specimen^c)) and (has_specified_input^op some milk specimen^c and (has role^op some evaluant role^c)))
has super-classes: assay^c

milk assay datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003365

is equivalent to: data item^c and (is_specified_output_of^op some milk assay^c)
has super-classes: data item^c
has sub-classes: antigen specific antibodies in milk assay datum^c

milk specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002505

is equivalent to: (specimen^c and (is_specified_output_of^op some specimen collection process^c) and (derives from^op some milk^c)) and (specimen^c and (is_specified_output_of^op some collecting specimen from organism^c))
has super-classes: bodily fluid specimen^c

minimal inhibitory concentration^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001514

has super-classes: scalar measurement datum^c; has measurement unit label^op some concentration unit^c; is about^op some dose response curve^c

mixed model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000115

has super-classes: statistical model^c

mode^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000016

has super-classes: center value^c; is_specified_output_of^op some mode calculation^c

mode calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200117

has super-classes: dataset creating^c; center calculation data transformation^c; (has_specified_output^op some center value^c) and (achieves_planned_objective^op some center calculation objective^c); achieves_planned_objective^op some descriptive statistical calculation objective^c

model outcome uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000354

classification to be confirmed

has super-classes: uncertainty^c

model structure uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000348

has super-classes: model uncertainty^c

model technical uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000349

has super-classes: model uncertainty^c

model uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000347

has super-classes: subjective uncertainty^c
has sub-classes: model structure uncertainty^c, model technical uncertainty^c

moderate degree of certainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000335

definition and classification to be confirmed

has super-classes: uncertainty^c

moderator variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000112

has super-classes: statistical variable^c

modular decomposition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200040

has super-classes: network analysis^c

molecular entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_23367

has super-classes: material entity^c
has sub-classes: macromolecule^c

molecular feature identification objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000131

has super-classes: biological feature identification objective^c
has sub-classes: epigenetic modification identification objective^c

Monte Carlo analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000264

has super-classes: uncertainty analysis^c

moral uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000357

classification to be confirmed

has super-classes: uncertainty^c

mortality rate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000231

has super-classes: rate^c

moving average^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200056

has super-classes: dataset creating^c; averaging data transformation^c; (has_specified_output^op some average value^c) and (achieves_planned_objective^op some averaging objective^c)

mucosa^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000344

has super-classes: protein-containing material entity^c; organ part^c
has sub-classes: nasal cavity mucosa^c

multicellular anatomical structure^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0010000

has super-classes: anatomical structure^c
has sub-classes: arm^c, organ^c, organ part^c, tissue^c

multilevel model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000022

has super-classes: statistical model^c

multinomial distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000103

has super-classes: discrete probability distribution^c

multiple effects from single cause^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000275

definition to be confirmed

has super-classes: uncertainty arise condition^c

multiple linear regression analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200103

has super-classes: regression analysis method^c
has sub-classes: polynomial regression^c

multiple response variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000209

has super-classes: discrete variable^c

multiple testing correction method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200089

is equivalent to: achieves_planned_objective^op some multiple testing correction objective^c
has super-classes: inferential statistical data analysis^c; error correction data transformation^c; achieves_planned_objective^op some inferential statistical data analysis objective^c
has sub-classes: false discovery rate correction method^c, family wise error rate correction method^c, generalized family wise error rate correction method^c, proportion of expected false positives correction method^c, quantile number of false positives correction method^c, quantile proportion of false positives correction method^c, tail probability for the proportion of false positives correction method^c

multiple testing correction objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000791

has super-classes: error correction objective^c

multiplexed sequence data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002602

has super-classes: sequence data^c

multivariate analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000023

has super-classes: inferential statistical data analysis^c
has sub-classes: MANOVA^c, factor analysis^c

multiway ANOVA^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000048

has super-classes: ANOVA^c

n-to-1 design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500004

has super-classes: cross over design^c

N50^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001940

has super-classes: scalar measurement datum^c; transformed data item^c; has measurement unit label^op some measurement unit label^c; is about^op some assembly^c; is_specified_output_of^op some sequence assembly process^c
has sub-classes: contig N50^c, scaffold N50^c

nasal aspirate microbiology assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003580

has super-classes: organism detection assay^c; (realizes^op some evaluant role^c and (role of^op some nasal aspirate specimen^c)) and (has_specified_input^op some nasal aspirate specimen^c and (has role^op some evaluant role^c)); (realizes^op some measurand role^c and (characteristic of^op some organism^c)) and (has_specified_input^op some organism^c); has_specified_input^op some nasal aspirate specimen^c; has_specified_output^op some data item^c; has_specified_output^op some is about^op some organism^c

nasal aspirate microbiology datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003581

is equivalent to: organism detection datum^c and (is_specified_output_of^op some nasal aspirate microbiology assay^c)
has super-classes: organism detection datum^c

nasal aspirate specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002780

is equivalent to: (specimen^c and (is_specified_output_of^op some aspiration specimen collection^c)) and (specimen^c and (is_specified_output_of^op some specimen collection process^c and (has_specified_input^op some nasal cavity mucosa^c)))
has super-classes: specimen^c

nasal cavity mucosa^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001826

has super-classes: mucosa^c; endoderm-derived structure^c; ectoderm-derived structure^c

nasopharyngeal or oropharyngeal swab microbiology assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003285

has super-classes: organism detection assay^c; (realizes^op some evaluant role^c and (role of^op some nasopharyngeal swab specimen^c or oropharyngeal swab specimen^c)) and (has_specified_input^op some (nasopharyngeal swab specimen^c or oropharyngeal swab specimen^c) and (has role^op some evaluant role^c))

nasopharyngeal or oropharyngeal swab microbiology datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003257

is equivalent to: organism detection datum^c and (is_specified_output_of^op some nasopharyngeal or oropharyngeal swab microbiology assay^c)
has super-classes: organism detection datum^c
has sub-classes: bacteria in nasopharyngeal or oropharyngeal swab datum^c, eukaryota in nasopharyngeal or oropharyngeal swab datum^c, virus in nasopharyngeal or oropharyngeal swab datum^c

nasopharyngeal swab specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002606

is equivalent to: (specimen^c and (is_specified_output_of^op some collecting specimen with swab^c)) and (specimen^c and (is_specified_output_of^op some specimen collection process^c and (has_specified_input^op some nasopharynx^c)))
has super-classes: swab specimen^c

nasopharynx^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001728

has super-classes: proximo-distal subdivision of respiratory tract^c

negative binding datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001182

has super-classes: categorical binding datum^c

negative binomial distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000283

has super-classes: discrete probability distribution^c
has sub-classes: geometric distribution^c

negative likelihood ratio^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000046

has super-classes: likelihood ratio^c

network analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200080

has super-classes: data transformation^c
has sub-classes: edge quality calculation^c, edge weighting^c, modular decomposition^c, network graph construction^c, network graph quality calculation^c, network subgraph quality calculation^c, node quality calculation^c

network graph construction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200126

has super-classes: network analysis^c
has sub-classes: directed network graph construction^c, weighted network graph construction^c

network graph quality calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200147

has super-classes: network analysis^c
has sub-classes: global modularity calculation^c

network subgraph quality calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200137

has super-classes: network analysis^c
has sub-classes: intra subgraph connectivity calculation^c, quantitative subgraph degree calculation^c, subgraph degree calculation^c, subgraph in-degree calculation^c, subgraph modularity calculation^c, subgraph out-degree calculation^c

NMR instrument^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000566

has super-classes: measurement device^c; has function^op some measure function^c

node degree calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200130

has super-classes: node quality calculation^c

node in-degree calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200132

has super-classes: node quality calculation^c

node out-degree calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200133

has super-classes: node quality calculation^c

node quality calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200129

has super-classes: network analysis^c
has sub-classes: node degree calculation^c, node in-degree calculation^c, node out-degree calculation^c, node shortest path identification^c, quantitative node degree calculation^c

node shortest path identification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200134

has super-classes: node quality calculation^c

nominal data value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000199

has super-classes: numerical data value^c

nominal scale^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000091

has super-classes: measurement scale^c

nominal variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000205

has super-classes: discrete variable^c
has sub-classes: discrete ordinal variable^c

non-negative matrix factorization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200097

has super-classes: data transformation^c

non-parametric test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000236

has super-classes: statistical hypothesis test^c
has sub-classes: Durbin test^c, Kolmogorov–Smirnov test^c, Wilcoxon signed-rank test^c, log-rank test^c, mann-whitney U test^c

non-randomization sampling design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000088

has super-classes: data sampling design^c

nonlinear regression^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000087

has super-classes: regression analysis method^c

normal distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000005

has super-classes: continuous probability distribution^c; has probability density function^op some normal distribution probability density function^c
has sub-classes: Box-Cox distribution^c, standard normal distribution^c

normal distribution probability density function^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000051

has super-classes: probability density function^c

normal distribution transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000222

has super-classes: dataset creating^c; data transformation in statistics^c; test follows probability distribution^op some normal distribution^c; has_specified_input^op some numerical data set^c; has_specified_output^op some data set following normal distribution^c

normalization data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200169

is equivalent to: (has_specified_output^op some normalized data set^c) or (achieves_planned_objective^op some data normalization objective^c)
has super-classes: dataset creating^c; data transformation in statistics^c
has sub-classes: MA transformation^c, b transformation^c, biexponential transformation^c, box-cox transformation^c, cosine transformation^c, eh transformation^c, exponential transformation^c, hyperlog transformation^c, linlog transformation^c, loess transformation^c, logarithmic transformation^c, logical transformation^c, lowess transformation^c, mean centering^c, median centering^c, pareto scaling^c, quantile transformation^c, replicate analysis^c, robust multi-array average normalization^c, s transformation^c, sine transformation^c, soft independent modeling of class analogy analysis^c, total intensity transformation paired^c, total intensity transformation single^c, unit-variance scaling^c, variance stabilizing transformation^c

normalization testing design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001214

has super-classes: study design^c; has part^op some software testing objective^c; has part^op some study design independent variable^c and (is about^op some normalization data transformation^c)

normalized data set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000451

is equivalent to: is_specified_output_of^op some normalization data transformation^c
has super-classes: transformed data set^c
has sub-classes: mean-centered data^c

northing coordinate measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003067

has super-classes: one dimensional cartesian spatial coordinate datum^c

nucleic acid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_33696

has super-classes: macromolecule^c
has sub-classes: deoxyribonucleic acid^c

nucleic acid extract^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001010

has super-classes: extract^c; processed specimen^c; (is_specified_output_of^op some nucleic acid extraction^c) and (has role^op some specimen role^c); has grain^op some nucleic acid^c
has sub-classes: DNA extract^c

nucleic acid extraction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0666667

has super-classes: extraction^c; has_specified_input^op some sample from organism^c or organism^c or cultured cell population^c; has_specified_output^op some nucleic acid extract^c
has sub-classes: DNA extraction^c

null hypothesis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000057

has super-classes: testable hypothesis^c

number of errors^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001873

has super-classes: data item^c; value specification^c; is about^op some process^c; has specified numeric value^dp some integer

number of live births^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002395

has super-classes: measurement datum^c

number of lost events computer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000269

has super-classes: measurement datum^c

number of lost events electronic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000125

has super-classes: measurement datum^c

number of particles in subset^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000119

has super-classes: measurement datum^c

number of PCR cycles during library construction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002475

has super-classes: data item^c

number of pregnancies^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002394

has super-classes: measurement datum^c

number of rounds of amplification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002476

has super-classes: data item^c

number of variables^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200153

has super-classes: mathematical feature^c; has_feature_value^dp some integer

Numeral Unit Spread Assessment Pedigree^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000266

has super-classes: uncertainty analysis^c

numerical data item^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000136

has super-classes: data item^c; has member^op some numerical data value^c

numerical data set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000226

has super-classes: data set^c; has member^op some numerical data item^c

numerical data value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000193

has super-classes: information content entity^c
has sub-classes: cardinal data value^c, continuous data value^c, discrete data value^c, nominal data value^c, ordinal data value^c

object^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000030

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: material entity^c
has sub-classes: subjective object^c

object aggregate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000027

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: material entity^c

objective process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000255

has super-classes: process^c

objective specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000005

has super-classes: directive information entity^c
has sub-classes: assay objective^c, biological feature identification objective^c, data collection objective^c, data transformation objective^c, material maintenance objective^c, material transformation objective^c, methodology testing objective^c, specimen collection objective^c

objective uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000252

has super-classes: uncertainty^c
has sub-classes: context uncertainty^c, parameters uncertainty^c, statistical uncertainty^c, taxonomic uncertainty^c, technical uncertainty^c

obo basic subset ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000018

has super-classes: ontology module subsetted by expressivity^c

observation design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0300311

has super-classes: study design^c

observational difficulty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000297

definition to be confirmed

has super-classes: uncertainty arise condition^c

observations down-focused to smaller area^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000312

definition to be confirmed

has super-classes: uncertainty response activity^c

observations limited to available material^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000308

definition to be confirmed

has super-classes: uncertainty response activity^c

obsolescence reason specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000225

is equivalent to: { failed exploratory term , placeholder removed , terms merged , term imported , term split , out of scope }
has super-classes: data about an ontology part^c
has members: domain entity does not existⁿⁱ, out of scopeⁿⁱ, term importedⁿⁱ, term splitⁿⁱ, terms mergedⁿⁱ

occurrent^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000003

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: entity^c
has sub-classes: process^c, process boundary^c, spatiotemporal region^c, temporal region^c
is in domain of: has participant^op, occurs in^op, preceded by^op, precedes^op
is in range of: participates in^op, preceded by^op, precedes^op
is disjoint with: continuant^c

odds ratio^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000054

has super-classes: derived data from inferential statistical analysis^c; is_specified_output_of^op some inferential statistical data analysis^c

one dimensional cartesian spatial coordinate datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000401

has super-classes: cartesian spatial coordinate datum^c; denotes^op some zero-dimensional spatial region^c and (part of^op some one-dimensional spatial region^c); has x coordinate value^dp exactly 1
has sub-classes: easting coordinate measurement datum^c, northing coordinate measurement datum^c

one tailed test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000286

has super-classes: statistical hypothesis test^c

one-dimensional continuant fiat boundary^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000142

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: continuant fiat boundary^c
is disjoint with: two-dimensional continuant fiat boundary^c, zero-dimensional continuant fiat boundary^c

one-dimensional spatial region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000026

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: spatial region^c
is disjoint with: three-dimensional spatial region^c

one-dimensional temporal region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000038

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: temporal region^c
is disjoint with: zero-dimensional temporal region^c

one-way ANOVA^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000044

has super-classes: ANOVA^c

ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000000

has super-classes: data about an ontology part^c
has sub-classes: base ontology module^c, bridge ontology module^c, editors ontology module^c, generated ontology module^c, main release ontology module^c, reasoned ontology module^c, subset ontology module^c

ontology module subsetted by expressivity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000017

has super-classes: subset ontology module^c
has sub-classes: obo basic subset ontology module^c, ontology module subsetted by OWL profile^c

ontology module subsetted by OWL profile^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000019

has super-classes: ontology module subsetted by expressivity^c
has sub-classes: EL++ ontology module^c

operational taxonomic unit matrix^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001968

has super-classes: transformed data item^c; is about^op some material entity^c; is_specified_output_of^op some data transformation^c

operative complication (experimental)^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000295

definition to be confirmed

has super-classes: uncertainty arise condition^c

order data sequentially or by spatial location^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000298

definition to be confirmed

has super-classes: uncertainty response activity^c

ordinal data value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000196

has super-classes: numerical data value^c

ordinal scale^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000092

has super-classes: measurement scale^c

organ^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000062

has super-classes: multicellular anatomical structure^c
has sub-classes: lung^c, skin of body^c

organ part^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000064

has super-classes: multicellular anatomical structure^c
has sub-classes: mucosa^c, subdivision of tube^c

organism^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100026

is equivalent to: Viruses^c or Bacteria^c or Archaea^c or Eukaryota^c
has super-classes: material entity^c
has sub-classes: Archaea^c, Bacteria^c, Eukaryota^c, Viruses^c, genetically modified organism^c

organism detection assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003498

has super-classes: assay^c; has_specified_input^op some specimen^c; has_specified_output^op some is about^op some organism^c
has sub-classes: blood microbiology assay^c, bone marrow microbiology assay^c, cerebrospinal fluid microbiology assay^c, endotracheal tube aspirate microbiology assay^c, feces microbiology assay^c, induced sputum microbiology assay^c, lung microbiology assay^c, nasal aspirate microbiology assay^c, nasopharyngeal or oropharyngeal swab microbiology assay^c, pleural fluid microbiology assay^c, skin of body microbiology assay^c, urine microbiology assay^c

organism detection datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003064

is equivalent to: data item^c and (is_specified_output_of^op some organism detection assay^c)
has super-classes: data item^c
has sub-classes: blood microbiology datum^c, bone marrow microbiology datum^c, cerebrospinal fluid microbiology datum^c, endotracheal tube aspirate microbiology datum^c, feces microbiology datum^c, induced sputum microbiology datum^c, lung microbiology datum^c, nasal aspirate microbiology datum^c, nasopharyngeal or oropharyngeal swab microbiology datum^c, pleural fluid microbiology datum^c, skin of body microbiology datum^c, urine microbiology datum^c

organism diagnostic process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003366

has super-classes: drawing a conclusion based on data^c; has_specified_output^op some diagnosis of an organism^c
has sub-classes: remote patient assessment^c

organism feature identification objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000268

has super-classes: biological feature identification objective^c

organism substance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000463

has super-classes: material anatomical entity^c
has sub-classes: bodily fluid^c, excreta^c, respiratory system fluid/secretion^c

organismal body temperature measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003073

has super-classes: temperature measurement datum^c

organismal quality^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001995

has super-classes: physical object quality^c
has sub-classes: handedness^c, viability^c

organizational uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000330

has super-classes: subjective uncertainty^c

oropharyngeal swab specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002608

is equivalent to: (specimen^c and (is_specified_output_of^op some collecting specimen with swab^c)) and (specimen^c and (is_specified_output_of^op some specimen collection process^c and (has_specified_input^op some oropharynx^c)))
has super-classes: swab specimen^c

oropharynx^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001729

has super-classes: endoderm-derived structure^c; subdivision of tube^c

outlier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000012

has super-classes: derived data from inferential statistical analysis^c; is_specified_output_of^op some inferential statistical data analysis^c

p-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000175

has super-classes: quantitative confidence value^c

paired t-test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000095

has super-classes: within subject comparison statistical test^c

parameter threshold^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000172

has super-classes: measurement datum^c

parameters uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000353

definition and classification to be confirmed

has super-classes: objective uncertainty^c

pareto scaling^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200037

has super-classes: normalization data transformation^c; achieves_planned_objective^op some data normalization objective^c

partial karyotype information^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002770

has super-classes: karyotype information^c; part of^op some full karyotype information^c

partial least square discriminant analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200107

has super-classes: discriminant analysis^c

partial least square regression analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200105

has super-classes: regression analysis method^c

partially available data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000279

definition and classification to be confirmed

has super-classes: uncertainty arise condition^c

partitioning data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200171

is equivalent to: achieves_planned_objective^op some partitioning objective^c
has super-classes: data transformation^c
has sub-classes: canonical variate analysis^c, gating^c, k-means clustering^c, k-nearest neighbors^c, statistical model validation^c

partitioning objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200172

has super-classes: data transformation objective^c
has sub-classes: cross validation objective^c

partitioning of variance components^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000036

has super-classes: data transformation^c

passage history record^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002748

has super-classes: data item^c; is about^op some passage process^c

passage process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002747

has super-classes: material processing^c

pattern matching objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000868

has super-classes: data transformation objective^c

Patterns from Gene Expression software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000165

has super-classes: software^c; has part^op some differential expression analysis objective^c

PDB file^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001525

has super-classes: 3D structural organization datum^c

PDB file chain^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001596

has super-classes: 3D structural organization datum^c; part of^op some PDB file^c

peak calling^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000167

has super-classes: inferential statistical data analysis^c

peak matching^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000726

has super-classes: data transformation^c

pearson correlation coefficient calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200115

has super-classes: similarity calculation^c

Pearson's chi-square test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000244

has super-classes: chi square test^c

Pearson's correlation coefficient^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000280

has super-classes: correlation coefficient^c

pedigree chart^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000122

has super-classes: graph^c

percentile^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000073

has super-classes: quantitative confidence value^c

period prevalence rate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000064

has super-classes: prevalence rate^c

permutation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000176

has super-classes: data transformation in statistics^c
has sub-classes: random permutation^c

photograph^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000185

has super-classes: image^c

physical object quality^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001241

Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles.

has super-classes: quality^c
has sub-classes: length^c, organismal quality^c, physical quality^c

physical quality^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001018

has super-classes: physical object quality^c
has sub-classes: age^c, mass^c

physician's global assessment of disease activity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003593

has super-classes: clinical data item^c; is about^op some disease course^c

pie chart^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000165

has super-classes: graph^c

placental blood^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_8470000

has super-classes: blood^c

placental blood microbiology assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003381

has super-classes: blood microbiology assay^c; (realizes^op some evaluant role^c and (role of^op some placental blood specimen^c)) and (has_specified_input^op some placental blood specimen^c and (has role^op some evaluant role^c))

placental blood microbiology datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003382

is equivalent to: organism detection datum^c and (is_specified_output_of^op some placental blood microbiology assay^c)
has super-classes: blood microbiology datum^c
has sub-classes: eukaryota in placental blood datum^c

placental blood specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003380

is equivalent to: (specimen^c and (is_specified_output_of^op some specimen collection process^c) and (derives from^op some placental blood^c)) and (specimen^c and (is_specified_output_of^op some collecting specimen from organism^c))
has super-classes: bodily fluid specimen^c

plan specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000104

2/3/2009 Comment from OBI review. Action specification not well enough specified. Conditional specification not well enough specified. Question whether all plan specifications have objective specifications. Request that IAO either clarify these or change definitions not to use them

has super-classes: directive information entity^c; has part^op some objective specification^c; has part^op some action specification^c
has sub-classes: algorithm^c, data collection design^c, protocol^c, software^c, study design^c

planned process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000011

is equivalent to: realizes^op some concretizes^op some plan specification^c
has super-classes: process^c
has sub-classes: assay^c, data collection^c, data transformation^c, data visualization^c, dataset creating^c, documenting^c, drawing a conclusion^c, drawing a conclusion based on data^c, generation of missing data^c, group assignment^c, investigation^c, material maintenance^c, material processing^c, prediction^c, specimen collection process^c, study design execution^c, study intervention^c, uncertainty analysis^c, uncertainty quantification^c

planning^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000339

has super-classes: process^c; process^c and (has participant^op some plan specification^c)

pleural fluid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001087

has super-classes: transudate^c

pleural fluid microbiology assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003283

has super-classes: organism detection assay^c; (realizes^op some evaluant role^c and (role of^op some pleural fluid specimen^c)) and (has_specified_input^op some pleural fluid specimen^c and (has role^op some evaluant role^c))

pleural fluid microbiology datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003258

is equivalent to: organism detection datum^c and (is_specified_output_of^op some pleural fluid microbiology assay^c)
has super-classes: organism detection datum^c
has sub-classes: bacteria in pleural fluid datum^c, eukaryota in pleural fluid datum^c, virus in pleural fluid datum^c

pleural fluid specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002515

is equivalent to: (specimen^c and (is_specified_output_of^op some specimen collection process^c) and (derives from^op some pleural fluid^c)) and (specimen^c and (is_specified_output_of^op some collecting specimen from organism^c))
has super-classes: bodily fluid specimen^c

Pluralistic fRamework of Integrated uncertainty Management and risk Analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000268

has super-classes: uncertainty analysis^c

point biserial correlation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000009

has super-classes: correlation statistical analysis^c

point prevalence rate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000065

has super-classes: prevalence rate^c

Poisson distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000045

has super-classes: discrete probability distribution^c

polychoric correlation coefficient^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000269

has super-classes: correlation coefficient^c
has sub-classes: tetrachoric correlation coefficient^c

polynomial degree^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200152

has super-classes: mathematical feature^c; has_feature_value^dp some non negative integer

polynomial regression^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000061

has super-classes: multiple linear regression analysis^c

polynomial transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200093

has super-classes: data transformation in statistics^c
has sub-classes: homogeneous polynomial transformation^c

poor management-staff relation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000289

definition to be confirmed

has super-classes: uncertainty arise condition^c

portioning objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000678

has super-classes: material separation objective^c

positive binding datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003295

has super-classes: categorical binding datum^c

positive likelihood ratio^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000047

has super-classes: likelihood ratio^c

positive or neutral certainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000333

definition and classification to be confirmed

has super-classes: uncertainty^c

positive uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000337

definition and classification to be confirmed

has super-classes: uncertainty^c

post-transcriptional modification design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001358

has super-classes: intervention design^c; has part^op some biological feature identification objective^c; has part^op some study design independent variable^c and (is about^op some study intervention^c)

power^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000074

has super-classes: quantitative confidence value^c

power calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000024

has super-classes: data transformation^c

pre-mortem specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000873

is equivalent to: is_specified_output_of^op some specimen collection process^c and (has_specified_input^op some organism^c and (has quality^op some alive^c))
has super-classes: specimen with pre- or post-mortem status^c

predicted data item^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302867

is equivalent to: is_specified_output_of^op some prediction^c
has super-classes: data item^c

prediction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302910

has super-classes: planned process^c; has_specified_input^op some measurement datum^c; has_specified_output^op some measurement datum^c

predictive validity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000161

has super-classes: criterion validity^c

preference variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000208

has super-classes: discrete variable^c

presence of blood from host organism in blood meal specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002994

has super-classes: data item^c

prevalence of blood meal specimens from a host organism^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002993

has super-classes: data item^c

prevalence of pathogen in specimens^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002992

has super-classes: data item^c

prevalence rate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000055

has super-classes: derived data from inferential statistical analysis^c; is_specified_output_of^op some inferential statistical data analysis^c
has sub-classes: period prevalence rate^c, point prevalence rate^c

primary structure of DNA macromolecule^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000811

is equivalent to: is concretized as^op some characteristic of^op some deoxyribonucleic acid^c
has super-classes: region^c

principal component regression^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200104

has super-classes: dataset creating^c; regression analysis method^c; class discovery data transformation^c; (has_specified_output^op some clustered data set^c) and (achieves_planned_objective^op some class discovery objective^c)

principal components analysis dimensionality reduction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200051

has super-classes: dimensionality reduction^c

probabilistic algorithm^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200052

has super-classes: data transformation^c
has sub-classes: expectation maximization^c

probability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000324

definition and classification to be confirmed

has super-classes: uncertainty^c

probability density function^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000116

has super-classes: data transformation^c
has sub-classes: normal distribution probability density function^c
is in range of: has probability density function^op

probability distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000010

has super-classes: information content entity^c; is about^op some data set^c
has sub-classes: Hotelling T2 distribution^c, Wilk's lambda distribution^c, continuous probability distribution^c, discrete probability distribution^c, frequency distribution^c, histogram distribution^c
is in domain of: has probability density function^op
is in range of: has probability distribution^op

process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000015

is defined by: http://purl.obolibrary.org/obo/bfo.owl

An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.

has super-classes: occurrent^c
has sub-classes: biological_process^c, disease course^c, history^c, objective process^c, planned process^c, planning^c, process profile^c, subjective process^c, uncertainty arise condition^c, uncertainty elimination^c, uncertainty response activity^c
is in domain of: realizes^op
is in range of: realized in^op
is disjoint with: temporal region^c

process boundary^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000035

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: occurrent^c
is disjoint with: temporal region^c

process profile^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000144

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: process^c
is disjoint with: history^c

processed material^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000047

is equivalent to: material entity^c and (is_specified_output_of^op some material processing^c)
has super-classes: material entity^c
has sub-classes: cell freezing medium^c, culture medium^c, cultured cell population^c, device^c, extract^c, genetically modified material^c, processed specimen^c

processed specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000953

A tissue sample that has been sliced and stained for a histology study.

is equivalent to: processed material^c and specimen^c
has super-classes: processed material^c; specimen^c
has sub-classes: nucleic acid extract^c

processing incompatible data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000178

has super-classes: data transformation^c

prognosis uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000332

definition and classification to be confirmed

has super-classes: subjective uncertainty^c

proportion mapped reads^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003056

has super-classes: sequence data^c

proportion of expected false positives correction method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200164

has super-classes: dataset creating^c; multiple testing correction method^c; (has_specified_output^op some error corrected data set^c) and (achieves_planned_objective^op some multiple testing correction objective^c)

proportional hazards model estimation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200195

has super-classes: inferential statistical data analysis^c; survival analysis data transformation^c; achieves_planned_objective^op some inferential statistical data analysis objective^c; achieves_planned_objective^op some survival analysis objective^c

proprietary uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000360

classification to be confirmed

has super-classes: uncertainty^c

protein-containing material entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PR_000050567

Note: This includes single proteins and derivatives thereof (PR:000000001), protein-containing complexes (GO:0032991), and protein aggregates (PR:000050566).

has super-classes: material entity^c
has sub-classes: blood^c, milk^c, mucosa^c, skin of body^c

protocol^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000272

has super-classes: plan specification^c
has sub-classes: magnetic resonance pulse sequence protocol^c

proximo-distal subdivision of respiratory tract^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000072

has super-classes: endoderm-derived structure^c; subdivision of tube^c
has sub-classes: nasopharynx^c

psychological uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000362

classification to be confirmed

has super-classes: subjective uncertainty^c

Q-Q plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000241

has super-classes: graph^c

q-value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001442

has super-classes: quantitative confidence value^c; error corrected data set^c

quality^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000019

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: specifically dependent continuant^c
has sub-classes: relational quality^c
is in range of: has quality^op
is disjoint with: realizable entity^c

quality^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000001

has super-classes: specifically dependent continuant^c
has sub-classes: physical object quality^c, rate^c

quantile calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200118

has super-classes: descriptive statistical calculation data transformation^c; achieves_planned_objective^op some descriptive statistical calculation objective^c

quantile number of false positives correction method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200161

has super-classes: dataset creating^c; multiple testing correction method^c; (has_specified_output^op some error corrected data set^c) and (achieves_planned_objective^op some multiple testing correction objective^c)

quantile proportion of false positives correction method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200165

has super-classes: dataset creating^c; multiple testing correction method^c; (has_specified_output^op some error corrected data set^c) and (achieves_planned_objective^op some multiple testing correction objective^c)

quantile transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200028

has super-classes: normalization data transformation^c; center calculation data transformation^c; (has_specified_output^op some center value^c) and (achieves_planned_objective^op some center calculation objective^c); achieves_planned_objective^op some data normalization objective^c

quantitative binding datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003142

has super-classes: binding datum^c
has sub-classes: 50% dissociation of binding temperature (Tm)^c, EC50 binding datum^c, IC50 binding datum^c, binding constant^c

quantitative confidence value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000071

has super-classes: derived data from inferential statistical analysis^c; is_specified_output_of^op some inferential statistical data analysis^c
has sub-classes: FWER adjusted p-value^c, R squared value^c, bias^c, coefficient of variation^c, cohen's kappa coefficient^c, confidence interval^c, correlation coefficient^c, credible interval^c, expected value^c, interquartile range^c, intraclass correlation coefficient^c, likelihood ratio^c, p-value^c, percentile^c, power^c, q-value^c, random error^c, range^c, standard deviation^c, standard error^c, standardized coefficient^c, statistical error^c, type 1 error rate^c, type 2 error rate^c

quantitative node degree calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200131

has super-classes: node quality calculation^c

quantitative subgraph degree calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200139

has super-classes: network subgraph quality calculation^c

R squared value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000144

has super-classes: quantitative confidence value^c

r2 measure of linkage desequilibrium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000123

has super-classes: correlation coefficient^c

random access memory^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001877

has super-classes: material information bearer^c

random access memory size^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001874

has super-classes: scalar measurement datum^c; is about^op some random access memory^c and (part of^op some computer^c)

random effect^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000098

has super-classes: statistical effect^c

random error^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000075

has super-classes: quantitative confidence value^c

random permutation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000179

has super-classes: permutation^c
has sub-classes: knuth shuffle^c

random selection^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000063

is equivalent to: realizes^op some concretizes^op some randomization sampling design^c
has super-classes: data collection by sampling^c

random variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000126

has super-classes: statistical variable^c
has sub-classes: continuous random variable^c, discrete random variable^c

randomization sampling design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000089

has super-classes: data sampling design^c

randomized complete block design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500007

has super-classes: intervention design^c
has sub-classes: graeco latin square design^c, hyper graeco latin square design^c, latin square design^c

randomized controlled trial design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000107

has super-classes: study design^c

range^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000076

has super-classes: quantitative confidence value^c

rank order^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000117

has super-classes: derived data from inferential statistical analysis^c; is_specified_output_of^op some inferential statistical data analysis^c

rank-order transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000192

has super-classes: data transformation in statistics^c

rarity of event^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000274

has super-classes: uncertainty arise condition^c

rate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000161

has super-classes: quality^c
has sub-classes: hospital unit shift rate^c, mortality rate^c

rate measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001554

has super-classes: scalar measurement datum^c
has sub-classes: binding off rate measurement datum (koff)^c, binding on rate measurement datum (kon)^c

ratio of collected to emitted light^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000054

has super-classes: measurement datum^c

ratio scale^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000093

has super-classes: measurement scale^c

ratio-scale variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000204

has super-classes: continuous variable^c

raw image data set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003331

has super-classes: image data set^c
has sub-classes: raw magnetic resonance image data set^c

raw magnetic resonance image data set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003354

is equivalent to: raw image data set^c and (is about^op some magnetic resonance imaging participant^c) and (is_specified_output_of^op some magnetic resonance imaging assay^c)
has super-classes: magnetic resonance image data set^c; raw image data set^c

raw magnetic resonance image data set reconstruction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003356

is equivalent to: image data set analysis^c and (has_specified_input^op some raw magnetic resonance image data set^c) and (has_specified_output^op some reconstructed magnetic resonance image data set^c)
has super-classes: dataset creating^c; image data set analysis^c

reacting subject^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000294

definition to be confirmed

has super-classes: uncertainty arise condition^c

reagent role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000086

(copied from ReO) Reagents are distinguished from instruments or devices that also participate in scientific techniques by the fact that reagents are chemical or biological in nature and necessarily participate in or have parts that participate in some chemical interaction or reaction during their intended participation in some technique. By contrast, instruments do not participate in a chemical reaction/interaction during the technique. Reagents are distinguished from study subjects/evaluants in that study subjects and evaluants are that about which conclusions are drawn and knowledge is sought in an investigation - while reagents, by definition, are not. It should be noted, however, that reagent and study subject/evaluant roles can be borne by instances of the same type of material entity - but a given instance will realize only one of these roles in the execution of a given assay or technique. For example, taq polymerase can bear a reagent role or an evaluant role. In a DNA sequencing assay aimed at generating sequence data about some plasmid, the reagent role of the taq polymerase is realized. In an assay to evaluate the quality of the taq polymerase itself, the evaluant/study subject role of the taq is realized, but not the reagent role since the taq is the subject about which data is generated. In regard to the statement that reagents are 'distinct' from the specified outputs of a technique, note that a reagent may be incorporated into a material output of a technique, as long as the IDENTITY of this output is distinct from that of the bearer of the reagent role. For example, dNTPs input into a PCR are reagents that become part of the material output of this technique, but this output has a new identity (ie that of a 'nucleic acid molecule') that is distinct from the identity of the dNTPs that comprise it. Similarly, a biotin molecule input into a cell labeling technique are reagents that become part of the specified output, but the identity of the output is that of some modified cell specimen which shares identity with the input unmodified cell specimen, and not with the biotin label. Thus, we see that an important criteria of 'reagent-ness' is that it is a facilitator, and not the primary focus of an investigation or material processing technique (ie not the specified subject/evaluant about which knowledge is sought, or the specified output material of the technique).

has super-classes: role^c

real time quantitative pcr plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000168

has super-classes: line graph^c

realizable entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000017

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: specifically dependent continuant^c
has sub-classes: disposition^c, role^c
is in domain of: realized in^op
is in range of: realizes^op
is disjoint with: quality^c

reasoned ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000013

has super-classes: ontology module^c

Receiver operating characteristic curve analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000248

has super-classes: dataset creating^c; descriptive statistical calculation data transformation^c; has_specified_output^op some receiver operational characteristics curve^c

receiver operational characteristics curve^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000274

has super-classes: graph^c

recognized ignorance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000342

classification to be confirmed

has super-classes: uncertainty^c
has sub-classes: irreducible ignorance^c, reducible ignorance^c

reconstructed magnetic resonance image data set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003334

is equivalent to: computed image data set^c and (is about^op some magnetic resonance imaging participant^c)
has super-classes: magnetic resonance image data set^c; computed image data set^c

reduced dimension data set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000676

is equivalent to: is_specified_output_of^op some data vector reduction data transformation^c
has super-classes: transformed data set^c; derived data from inferential statistical analysis^c

reducible ignorance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000343

has super-classes: recognized ignorance^c

reference gene sequence start site^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002981

has super-classes: sequence data^c

reference gene sequence stop site^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002982

has super-classes: sequence data^c

reference protein sequence start site^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002979

has super-classes: sequence data^c

reference protein sequence stop site^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002980

has super-classes: sequence data^c

region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/SO_0000001

has super-classes: generically dependent continuant^c
has sub-classes: experimental_feature^c, primary structure of DNA macromolecule^c

regression analysis method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200102

has super-classes: inferential statistical data analysis^c; achieves_planned_objective^op some inferential statistical data analysis objective^c
has sub-classes: Kriging^c, least square regression^c, logit regression^c, multiple linear regression analysis^c, nonlinear regression^c, partial least square regression analysis^c, principal component regression^c

relational graph^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000213

has super-classes: mathematic graph^c

relational quality^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000145

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: quality^c

relative risk^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000056

has super-classes: derived data from inferential statistical analysis^c; is_specified_output_of^op some inferential statistical data analysis^c

reliability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000057

has super-classes: derived data from inferential statistical analysis^c; is_specified_output_of^op some inferential statistical data analysis^c

remote patient assessment^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003374

Date :: 02T14:15:39Z/05/2022

has super-classes: organism diagnostic process^c

repeated measure ANOVA^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000260

has super-classes: ANOVA^c; within subject comparison statistical test^c

repeated measure design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500002

has super-classes: intervention design^c
has sub-classes: cross over design^c

replicate analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200057

has super-classes: normalization data transformation^c; achieves_planned_objective^op some data normalization objective^c
has sub-classes: dye swap merge^c

replicate design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500018

has super-classes: study design^c

representation validity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000162

has super-classes: content validity^c

respiratory system fluid/secretion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0006538

has super-classes: organism substance^c
has sub-classes: sputum^c

response to stimulus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0050896

Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.

has super-classes: biological_process^c

RNA Integrity Number calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002136

has super-classes: data transformation^c; has_specified_output^op some measurement datum^c and (has value specification^op some RNA Integrity Number value specification^c)

RNA Integrity Number value specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002137

has super-classes: value specification^c

robust multi-array average normalization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000140

has super-classes: normalization data transformation^c; has part^op some background correction data transformation^c; has part^op some quantile transformation^c; has_specified_input^op some data set^c; has_specified_output^op some transformed data set^c

role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000023

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: realizable entity^c
has sub-classes: evaluant role^c, material to be added role^c, measurand role^c, reagent role^c, specimen role^c, target of material addition role^c
is in range of: has role^op
is disjoint with: disposition^c

row submatrix extraction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200075

has super-classes: submatrix extraction^c

RT-PCR standard curve^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000219

has super-classes: line graph^c

s transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200110

has super-classes: normalization data transformation^c; achieves_planned_objective^op some data normalization objective^c

sample from organism^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000671

is equivalent to: (is_specified_output_of^op some collecting specimen from organism^c) and (has role^op some material sample role^c)
has super-classes: material sample^c; specimen from organism^c; derives from^op some material anatomical entity^c

sampling error in the measurement^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000323

has super-classes: uncertainty arise condition^c

sampling time measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001508

has super-classes: time measurement datum^c

scaffold N50^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001945

has super-classes: N50^c; is about^op some supercontig^c and (is_specified_output_of^op some sequence assembly process^c)

scalar measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000032

has super-classes: measurement datum^c; has measurement unit label^op min 1; has measurement value^dp min 1
has sub-classes: N50^c, half maximal effective concentration (EC50)^c, half maximal inhibitory concentration (IC50)^c, length measurement datum^c, mass measurement datum^c, minimal inhibitory concentration^c, random access memory size^c, rate measurement datum^c, scalar score from composite inputs^c, sequencing library input quantity measurement datum^c, temperature measurement datum^c, time measurement datum^c

scalar score from composite inputs^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000970

has super-classes: scalar measurement datum^c; transformed data item^c; is_specified_output_of^op some data transformation^c; has measurement value^dp min 1
has sub-classes: Edinburgh score^c

scalar value specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001931

has super-classes: value specification^c; has measurement unit label^op min 1; has specified numeric value^dp min 1

scaling data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200185

is equivalent to: achieves_planned_objective^op some scaling objective^c
has super-classes: data transformation^c
has sub-classes: loess scale group transformation^c

scaling objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200183

has super-classes: data transformation objective^c

scatter plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000184

has super-classes: graph^c
has sub-classes: Funnel plot^c, Galbraith plot^c, MA plot^c, manhattan plot for gwas^c, volcano plot^c

scenario analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000267

has super-classes: uncertainty analysis^c

scenario uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000341

classification to be confirmed

has super-classes: uncertainty^c

scientific uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000355

classification to be confirmed

has super-classes: uncertainty^c

screening sensitivity analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000262

to be confirmed

has super-classes: sensitivity analysis^c

search for pathognomonic sign^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000304

definition to be confirmed

has super-classes: uncertainty response activity^c

segmentation of uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000301

definition to be confirmed

has super-classes: uncertainty response activity^c

self-organizing map^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000701

has super-classes: dataset creating^c; class discovery data transformation^c; (has_specified_output^op some clustered data set^c or topologically preserved clustered data set^c) and (achieves_planned_objective^op some class discovery objective^c)

sensitivity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000058

has super-classes: derived data from inferential statistical analysis^c; is about^op some sensitivity disposition^c; is_specified_output_of^op some inferential statistical data analysis^c
has sub-classes: disease test sensitivity^c

sensitivity analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000259

has super-classes: uncertainty analysis^c
has sub-classes: global sensitivity analysis^c, local sensitivity analysis^c, screening sensitivity analysis^c

sensitivity disposition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000214

Authors :: AB, JZ, JFE, YH

This term is generated in OBCS based on BIPO: https://github.com/OpenLHS/BIPO. See more from OBCS track issue: https://github.com/obcs/obcs/issues/9

has super-classes: disposition^c
has sub-classes: medical test sensitivity disposition^c

separation into different composition objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000681

has super-classes: material separation objective^c

sequence alignment^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002567

has super-classes: sequence analysis data transformation^c; has_specified_input^op some sequence data^c; has_specified_output^op some aligned sequence data^c

sequence analysis data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200187

is equivalent to: achieves_planned_objective^op some sequence analysis objective^c
has super-classes: data transformation^c
has sub-classes: b cell epitope prediction^c, mhc binding prediction^c, sequence alignment^c, sequence data feature count tabulation^c, sequence library data demultiplexing^c, t cell epitope prediction^c

sequence analysis objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200081

has super-classes: data transformation objective^c

sequence assembly algorithm^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001522

has super-classes: algorithm^c

sequence assembly process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001872

has super-classes: data transformation^c; realizes^op some concretizes^op some sequence assembly algorithm^c; has_specified_input^op some sequence data^c; has_specified_output^op some sequence data^c; has_specified_output^op some genome coverage^c; has_specified_output^op some N50^c

sequence data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000973

has super-classes: measurement datum^c; measurement datum^c and (is about^op some region^c)
has sub-classes: DNA methylation profiling data^c, DNA sequence data^c, adapter sequence data^c, adapter-trimmed sequence data^c, aligned sequence data^c, demultiplexed sequence data^c, input gene sequence start site^c, input gene sequence stop site^c, input protein sequence start site^c, input protein sequence stop site^c, merged aligned sequence data^c, multiplexed sequence data^c, proportion mapped reads^c, reference gene sequence start site^c, reference gene sequence stop site^c, reference protein sequence start site^c, reference protein sequence stop site^c, trimmed sequence data^c

sequence data feature count tabulation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002568

has super-classes: dataset creating^c; sequence analysis data transformation^c; has_specified_input^op some aligned sequence data^c; has_specified_output^op some sequence library feature count data^c

sequence library data demultiplexing^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001966

has super-classes: sequence analysis data transformation^c; achieves_planned_objective^op some sequence analysis objective^c

sequence library feature count data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002582

has super-classes: data set^c

sequence read length measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002479

has super-classes: measurement datum^c

sequence trimming^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002585

has super-classes: data transformation^c
has sub-classes: adapter-sequence trimming^c

sequence_assembly^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/SO_0000353

has super-classes: assembly^c
has sub-classes: contig^c, supercontig^c

sequencing library input quantity measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002480

has super-classes: scalar measurement datum^c

sequential design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0300310

has super-classes: intervention design^c

sequential organ failure assessment score^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003592

has super-classes: clinical data item^c

setting datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000140

has super-classes: data item^c

shotgun treatment^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000305

definition to be confirmed

has super-classes: uncertainty response activity^c

signal-2-noise statistical analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000142

has super-classes: univariate analysis^c; has_specified_output^op some p-value^c

significance analysis of microarrays^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000141

has super-classes: inferential statistical data analysis^c; has_specified_output^op some p-value^c

similarity calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200113

has super-classes: dataset creating^c; class prediction data transformation^c; class discovery data transformation^c; has_specified_output^op some classified data set^c; has_specified_output^op some clustered data set^c
has sub-classes: euclidean distance calculation^c, pearson correlation coefficient calculation^c

sine transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200016

has super-classes: normalization data transformation^c; achieves_planned_objective^op some data normalization objective^c

single layer subset ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000009

has super-classes: subset ontology module^c

single linkage hierarchical clustering^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200045

has super-classes: agglomerative hierarchical clustering^c

site^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000029

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: immaterial entity^c
is disjoint with: spatial region^c

situational uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000361

classification to be confirmed

has super-classes: uncertainty^c

skewness calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200123

has super-classes: dataset creating^c; center calculation data transformation^c; (has_specified_output^op some center value^c) and (achieves_planned_objective^op some center calculation objective^c); achieves_planned_objective^op some descriptive statistical calculation objective^c

skin of body^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002097

has super-classes: protein-containing material entity^c; organ^c; ectoderm-derived structure^c

skin of body microbiology assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003576

has super-classes: organism detection assay^c; (realizes^op some evaluant role^c and (role of^op some skin of body specimen^c)) and (has_specified_input^op some skin of body specimen^c and (has role^op some evaluant role^c)); (realizes^op some measurand role^c and (characteristic of^op some organism^c)) and (has_specified_input^op some organism^c); has_specified_input^op some skin of body specimen^c; has_specified_output^op some data item^c; has_specified_output^op some is about^op some organism^c

skin of body microbiology datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003577

is equivalent to: organism detection datum^c and (is_specified_output_of^op some skin of body microbiology assay^c)
has super-classes: organism detection datum^c

skin of body specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002526

is equivalent to: (specimen^c and (is_specified_output_of^op some specimen collection process^c) and (derives from^op some tissue^c and (part of^op some skin of body^c))) and (specimen^c and (is_specified_output_of^op some collecting specimen from organism^c))
has super-classes: specimen from organism^c

societal uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000358

classification to be confirmed

has super-classes: uncertainty^c
has sub-classes: institutional uncertainty^c

societal variability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000321

has super-classes: uncertainty arise condition^c

soft independent modeling of class analogy analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200098

has super-classes: normalization data transformation^c; achieves_planned_objective^op some data normalization objective^c

software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000010

has super-classes: plan specification^c
has sub-classes: Extraction of Differential Gene Expression software^c, GLobal Identifier of Target Regions software^c, Patterns from Gene Expression software^c, software application^c, software library^c, software method^c, software module^c, software script^c, web crawling software^c

software application^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000594

has super-classes: software^c

software interpreter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000065

has super-classes: algorithm^c

software library^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000593

has super-classes: software^c

software method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000591

has super-classes: software^c

software module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000592

has super-classes: software^c

software script^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000595

has super-classes: software^c

software testing objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000242

has super-classes: methodology testing objective^c

sorting^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000185

has super-classes: data transformation in statistics^c
has sub-classes: sorting based on lexicorgraphic order^c, sorting based on numerical order^c

sorting based on lexicorgraphic order^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000187

has super-classes: sorting^c

sorting based on numerical order^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000186

has super-classes: sorting^c

spatial region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000006

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: immaterial entity^c
has sub-classes: one-dimensional spatial region^c, three-dimensional spatial region^c, two-dimensional spatial region^c, zero-dimensional spatial region^c
is disjoint with: site^c, continuant fiat boundary^c

spatiotemporal region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000011

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: occurrent^c
is disjoint with: temporal region^c

Spear box and whisker plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000171

has super-classes: box and whisker plot^c

Spearman's rank correlation coefficient^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000201

has super-classes: correlation coefficient^c

specialist/nonspecialist handling of the same case^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000287

definition to be confirmed

has super-classes: uncertainty arise condition^c

species subset ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000012

has super-classes: subset ontology module^c

specifically dependent continuant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000020

is defined by: http://purl.obolibrary.org/obo/bfo.owl

A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.

has super-classes: continuant^c
has sub-classes: quality^c, quality^c, realizable entity^c
is in domain of: concretizes^op
is in range of: has characteristic^op, is concretized as^op
is disjoint with: independent continuant^c, generically dependent continuant^c

specificity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000059

has super-classes: derived data from inferential statistical analysis^c; is_specified_output_of^op some inferential statistical data analysis^c
has sub-classes: disease test specificity^c

specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100051

is equivalent to: material entity^c and (has role^op some specimen role^c)
has super-classes: material entity^c
has sub-classes: material sample^c, nasal aspirate specimen^c, processed specimen^c, specimen from organism^c, specimen with pre- or post-mortem status^c, swab specimen^c

specimen collection duration^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002988

has super-classes: time measurement datum^c

specimen collection objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000684

has super-classes: objective specification^c

specimen collection process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000659

is equivalent to: planned process^c and (achieves_planned_objective^op some specimen collection objective^c)
has super-classes: planned process^c; has_specified_input^op some material entity^c; has_specified_output^op some specimen^c
has sub-classes: aspiration specimen collection^c, collecting specimen from organism^c, collecting specimen with swab^c

specimen collection time measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001619

has super-classes: time measurement datum^c; is about^op some process boundary^c and (starts^op some specimen collection process^c)
has sub-classes: specimen collection time post disease onset^c, specimen collection time post infection^c

specimen collection time post disease onset^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003083

has super-classes: specimen collection time measurement datum^c

specimen collection time post infection^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003084

has super-classes: specimen collection time measurement datum^c

specimen from organism^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001479

is equivalent to: (has role^op some specimen role^c) and (derives from^op some material anatomical entity^c or anatomical cluster^c)
has super-classes: specimen^c
has sub-classes: bodily fluid specimen^c, bone marrow specimen^c, endotracheal aspirate specimen^c, feces specimen^c, lung specimen^c, sample from organism^c, skin of body specimen^c, sputum specimen^c, urine specimen^c

specimen harvest quantity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002482

has super-classes: measurement datum^c

specimen role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000112

has super-classes: role^c; characteristic of^op some material entity^c and (is_specified_output_of^op some specimen collection process^c)
has sub-classes: material sample role^c

specimen with pre- or post-mortem status^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001506

is equivalent to: is_specified_output_of^op some specimen collection process^c and (has_specified_input^op some organism^c and (has quality^op some alive^c or dead^c))
has super-classes: specimen^c
has sub-classes: pre-mortem specimen^c

spectrum analysis objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200197

has super-classes: data transformation objective^c

spike train datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000801

has super-classes: measurement datum^c

spike-in dilution factor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002483

has super-classes: data item^c

split-scale transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200014

has super-classes: data transformation^c

sporadic funding^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000291

definition to be confirmed

has super-classes: uncertainty arise condition^c

spread calculation data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200086

is equivalent to: achieves_planned_objective^op some spread calculation objective^c
has super-classes: descriptive statistical calculation data transformation^c; achieves_planned_objective^op some descriptive statistical calculation objective^c
has sub-classes: interquartile-range calculation^c, kurtosis calculation^c, standard deviation calculation^c, variance calculation^c

spread calculation objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200180

has super-classes: data transformation objective^c

sputum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0007311

has super-classes: respiratory system fluid/secretion^c

sputum specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002508

is equivalent to: (specimen^c and (is_specified_output_of^op some specimen collection process^c) and (derives from^op some sputum^c)) and (specimen^c and (is_specified_output_of^op some collecting specimen from organism^c))
has super-classes: specimen from organism^c
has sub-classes: induced sputum specimen^c

square root transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000190

has super-classes: data transformation in statistics^c

stacked bar chart^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000159

has super-classes: bar chart^c

standard deviation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000077

has super-classes: quantitative confidence value^c

standard deviation calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200121

has super-classes: spread calculation data transformation^c; achieves_planned_objective^op some descriptive statistical calculation objective^c; achieves_planned_objective^op some spread calculation objective^c

standard error^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000235

has super-classes: quantitative confidence value^c

standard normal distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000180

has super-classes: normal distribution^c

standardization of observational technique (form) and protocol^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000311

definition to be confirmed

has super-classes: standardize^c

standardization of techniques and material^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000310

definition to be confirmed

has super-classes: standardize^c

standardize^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000299

definition to be confirmed

has super-classes: uncertainty response activity^c
has sub-classes: standardization of observational technique (form) and protocol^c, standardization of techniques and material^c

standardized coefficient^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000085

has super-classes: quantitative confidence value^c

standardized mortality ratio^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000150

has super-classes: derived data from inferential statistical analysis^c; is_specified_output_of^op some inferential statistical data analysis^c

statistical association^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000026

has super-classes: inferential statistical data analysis^c

statistical conclusion validity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000151

has super-classes: experimental validity^c

statistical data analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000001

is equivalent to: achieves_planned_objective^op some inferential statistical data analysis objective^c or descriptive statistical calculation objective^c
has super-classes: data transformation^c
has sub-classes: descriptive statistical calculation data transformation^c, inferential statistical data analysis^c

statistical effect^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000037

has super-classes: directive information entity^c
has sub-classes: fixed effect^c, interaction effect^c, random effect^c

statistical error^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000082

has super-classes: quantitative confidence value^c
has sub-classes: lack of fit error^c, type I error^c, type II error^c

statistical hypothesis test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000673

is equivalent to: achieves_planned_objective^op some statistical hypothesis test objective^c
has super-classes: inferential statistical data analysis^c; achieves_planned_objective^op some inferential statistical data analysis objective^c
has sub-classes: ANOVA^c, F test^c, Fisher's exact test^c, Student's t-test^c, chi square test^c, levene's test^c, loglinear analysis^c, non-parametric test^c, one tailed test^c, two tailed test^c, within subject comparison statistical test^c

statistical hypothesis test objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000675

has super-classes: data transformation objective^c

statistical model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000035

has super-classes: directive information entity^c
has sub-classes: causal model^c, hierarchical linear model^c, mixed model^c, multilevel model^c

statistical model validation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000792

is equivalent to: achieves_planned_objective^op some cross validation objective^c
has super-classes: inferential statistical data analysis^c; partitioning data transformation^c; achieves_planned_objective^op some inferential statistical data analysis objective^c
has sub-classes: K-fold cross validation method^c, boostrapping^c, jackknifing method^c, leave one out cross validation method^c

statistical uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000339

has super-classes: objective uncertainty^c
has sub-classes: measurement uncertainty^c

statistical variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000038

has super-classes: directive information entity^c; is about^op some data item^c
has sub-classes: continuous variable^c, dependent variable^c, discrete variable^c, dummy variable^c, independent variable^c, mediating variable^c, moderator variable^c, random variable^c

stimulus or stress design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001396

has super-classes: intervention design^c; has part^op some organism feature identification objective^c and (is about^op some response to stimulus^c); has part^op some study design independent variable^c and (is about^op some study intervention^c)

Student's t distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000006

has super-classes: continuous probability distribution^c

Student's t-test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000739

has super-classes: statistical hypothesis test^c; test follows probability distribution^op some Student's t distribution^c; has_specified_output^op some p-value^c; achieves_planned_objective^op some statistical hypothesis test objective^c

studentized range distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000023

has super-classes: continuous probability distribution^c

study design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500000

has super-classes: plan specification^c; has part^op some protocol^c
has sub-classes: balanced design^c, case-control study design^c, cohort study design^c, intervention design^c, normalization testing design^c, observation design^c, randomized controlled trial design^c, replicate design^c, time series design^c

study design dependent variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000751

has super-classes: directive information entity^c; part of^op some study design^c

study design execution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000471

is equivalent to: planned process^c and (realizes^op some concretizes^op some study design^c)
has super-classes: planned process^c

study design independent variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000750

has super-classes: directive information entity^c; part of^op some study design^c

study intervention^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000931

has super-classes: planned process^c; (has_specified_input^op some specimen^c) and (has_specified_output^op some specimen^c); part of^op some study design execution^c and (realizes^op some concretizes^op some intervention design^c)

subdivision of tube^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0013522

has super-classes: organ part^c
has sub-classes: oropharynx^c, proximo-distal subdivision of respiratory tract^c

subgraph degree calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200138

has super-classes: network subgraph quality calculation^c

subgraph in-degree calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200143

has super-classes: network subgraph quality calculation^c

subgraph modularity calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200146

has super-classes: network subgraph quality calculation^c

subgraph out-degree calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200144

has super-classes: network subgraph quality calculation^c

subjective judgement^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000318

definition to be confirmed

has super-classes: uncertainty arise condition^c

subjective object^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000254

has super-classes: object^c

subjective process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000256

has super-classes: process^c
has sub-classes: decision making^c

subjective uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000253

has super-classes: uncertainty^c
has sub-classes: ambiguity^c, complexity-induced uncertainty^c, diagnostic uncertainty^c, identity uncertainty^c, model uncertainty^c, organizational uncertainty^c, prognosis uncertainty^c, psychological uncertainty^c

submatrix extraction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200074

has super-classes: dimensionality reduction^c
has sub-classes: column submatrix extraction^c, row submatrix extraction^c

subset ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000006

has super-classes: ontology module^c
has sub-classes: analysis subset ontology module^c, curation subset ontology module^c, exclusion subset ontology module^c, import ontology module^c, ontology module subsetted by expressivity^c, single layer subset ontology module^c, species subset ontology module^c

substitution of taxonomy for diagnosis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000302

definition to be confirmed

has super-classes: uncertainty response activity^c

substitution of theoretical validity for technical consistency^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000313

definition to be confirmed

has super-classes: uncertainty response activity^c

sum value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000170

is equivalent to: is_specified_output_of^op some summing data values^c
has super-classes: transformed data item^c

summing data values^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000169

has super-classes: data transformation^c

supercontig^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/SO_0000148

has super-classes: sequence_assembly^c

support vector machine^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000700

has super-classes: class prediction data transformation^c; achieves_planned_objective^op some class prediction objective^c

survival analysis data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200194

is equivalent to: achieves_planned_objective^op some survival analysis objective^c
has super-classes: data transformation^c
has sub-classes: Kaplan Meier^c, proportional hazards model estimation^c

survival analysis objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200083

has super-classes: data transformation objective^c

survival rate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000789

has super-classes: measurement datum^c

swab specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002599

is equivalent to: is_specified_output_of^op some collecting specimen with swab^c
has super-classes: specimen^c
has sub-classes: nasopharyngeal swab specimen^c, oropharyngeal swab specimen^c

system data uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000352

has super-classes: input uncertainty^c

t cell epitope prediction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200060

has super-classes: sequence analysis data transformation^c; achieves_planned_objective^op some sequence analysis objective^c

table^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000306

has super-classes: textual entity^c

tail probability for the proportion of false positives correction method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200162

has super-classes: multiple testing correction method^c; achieves_planned_objective^op some multiple testing correction objective^c

target of material addition role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000444

has super-classes: role^c; characteristic of^op some material entity^c; realized in^op only adding a material entity into a target^c

taxonomic bridge ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000016

has super-classes: bridge ontology module^c

taxonomic uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000328

has super-classes: objective uncertainty^c

technical uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000331

has super-classes: objective uncertainty^c

technological surprise^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000322

has super-classes: uncertainty arise condition^c

temperature measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003079

has super-classes: scalar measurement datum^c
has sub-classes: axillary temperature measurement datum^c, organismal body temperature measurement datum^c

temperature unit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000005

has super-classes: measurement unit label^c

template generated ontology module^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000015

has super-classes: generated ontology module^c

temporal region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000008

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: occurrent^c
has sub-classes: one-dimensional temporal region^c, zero-dimensional temporal region^c
is disjoint with: spatiotemporal region^c, process^c, process boundary^c

test statistic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000013

has super-classes: derived data from inferential statistical analysis^c; is_specified_output_of^op some statistical hypothesis test^c
has sub-classes: bartlett's test^c, kappa statistic^c

test validity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000053

has super-classes: validity^c
has sub-classes: construct validity^c, content validity^c, criterion validity^c

testable hypothesis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001908

has super-classes: information content entity^c
has sub-classes: null hypothesis^c

tetrachoric correlation coefficient^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000212

has super-classes: polychoric correlation coefficient^c

textual entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000300

has super-classes: information content entity^c
has sub-classes: conclusion textual entity^c, table^c

three dimensional cartesian spatial coordinate datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000403

has super-classes: cartesian spatial coordinate datum^c; denotes^op some zero-dimensional spatial region^c and (part of^op some three-dimensional spatial region^c); has x coordinate value^dp exactly 1; has z coordinate value^dp exactly 1; has y coordinate value^dp exactly 1

three-dimensional spatial region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000028

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: spatial region^c
is disjoint with: two-dimensional spatial region^c, zero-dimensional spatial region^c, one-dimensional spatial region^c

time measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000416

has super-classes: scalar measurement datum^c; (has measurement unit label^op only time unit^c) and (is duration of^op only process^c)
has sub-classes: age measurement datum^c, computation run time^c, extraction date^c, extraction duration time^c, half life datum (t 1/2)^c, sampling time measurement datum^c, specimen collection duration^c, specimen collection time measurement datum^c

time sampled measurement data set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000584

has super-classes: data set^c; has part^op some time stamped measurement datum^c

time series design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500020

has super-classes: study design^c

time stamped measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000582

has super-classes: measurement datum^c; (has time stamp^op some time measurement datum^c) and (has measurement datum^op some measurement datum^c)

time unit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000003

has super-classes: measurement unit label^c

tissue^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000479

has super-classes: multicellular anatomical structure^c
has sub-classes: bone marrow^c

tissue section thickness^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002197

has super-classes: length measurement datum^c

topologically preserved clustered data set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000741

has super-classes: clustered data set^c

total ignorance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000345

classification to be confirmed

has super-classes: uncertainty^c

total intensity transformation paired^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200027

has super-classes: normalization data transformation^c; achieves_planned_objective^op some data normalization objective^c

total intensity transformation single^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200026

has super-classes: normalization data transformation^c; achieves_planned_objective^op some data normalization objective^c

transformed data item^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000233

is equivalent to: data item^c and (is_specified_output_of^op some data transformation^c)
has super-classes: data item^c
has sub-classes: N50^c, derived data from statistical analysis^c, genome coverage^c, merged aligned sequence data^c, operational taxonomic unit matrix^c, scalar score from composite inputs^c, sum value^c, transformed data set^c, trimmed sequence data^c

transformed data matrix^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000122

is equivalent to: data item^c and (has member^op some transformed data set^c) and (has member^op min 2 transformed data set^c)
has super-classes: data item^c

transformed data set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000123

is equivalent to: data set^c and (is_specified_output_of^op some data transformation^c)
has super-classes: data set^c; transformed data item^c; has member^op some transformed data item^c
has sub-classes: background corrected data set^c, classified data set^c, clustered data set^c, computed image data set^c, data set of features^c, data set of predicted values according to fitted curve^c, derived data from descriptive statistical analysis^c, error corrected data set^c, normalized data set^c, reduced dimension data set^c

transudate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0007779

has super-classes: bodily fluid^c
has sub-classes: cerebrospinal fluid^c, pleural fluid^c

trimmed sequence data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002569

is equivalent to: sequence data^c and (is_specified_output_of^op some sequence trimming^c)
has super-classes: transformed data item^c; sequence data^c

two dimensional cartesian spatial coordinate datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000402

has super-classes: cartesian spatial coordinate datum^c; denotes^op some zero-dimensional spatial region^c and (part of^op some two-dimensional spatial region^c); has x coordinate value^dp exactly 1; has y coordinate value^dp exactly 1

two tailed test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000287

has super-classes: statistical hypothesis test^c

two-dimensional continuant fiat boundary^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000146

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: continuant fiat boundary^c
is disjoint with: one-dimensional continuant fiat boundary^c

two-dimensional spatial region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000009

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: spatial region^c
is disjoint with: three-dimensional spatial region^c

two-way ANOVA^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000045

has super-classes: ANOVA^c

type 1 error rate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000078

has super-classes: quantitative confidence value^c

type 2 error rate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000079

has super-classes: quantitative confidence value^c

type I error^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000100

has super-classes: statistical error^c

type II error^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000101

has super-classes: statistical error^c

umbilical cord blood^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0012168

has super-classes: arterial blood^c

umbilical cord blood assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003238

is equivalent to: assay^c and ((realizes^op some evaluant role^c and (role of^op some umbilical cord blood specimen^c)) and (has_specified_input^op some umbilical cord blood specimen^c and (has role^op some evaluant role^c)))
has super-classes: assay^c
has sub-classes: umbilical cord blood microbiology assay^c

umbilical cord blood assay datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003259

is equivalent to: data item^c and (is_specified_output_of^op some umbilical cord blood assay^c)
has super-classes: data item^c
has sub-classes: umbilical cord blood microbiology datum^c

umbilical cord blood microbiology assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003284

has super-classes: blood microbiology assay^c; umbilical cord blood assay^c; (realizes^op some evaluant role^c and (role of^op some umbilical cord blood specimen^c)) and (has_specified_input^op some umbilical cord blood specimen^c and (has role^op some evaluant role^c))

umbilical cord blood microbiology datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003260

is equivalent to: organism detection datum^c and (is_specified_output_of^op some umbilical cord blood microbiology assay^c)
has super-classes: blood microbiology datum^c; umbilical cord blood assay datum^c
has sub-classes: eukaryota in umbilical cord blood datum^c

umbilical cord blood specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_2000012

is equivalent to: (specimen^c and (is_specified_output_of^op some specimen collection process^c) and (derives from^op some umbilical cord blood^c)) and (specimen^c and (is_specified_output_of^op some collecting specimen from organism^c))
has super-classes: arterial blood specimen^c

uncertainty^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000251

has super-classes: disposition^c
has sub-classes: determinism^c, detrimental certainty^c, detrimental uncertainty^c, input uncertainty^c, legal uncertainty^c, model outcome uncertainty^c, moderate degree of certainty^c, moral uncertainty^c, objective uncertainty^c, positive or neutral certainty^c, positive uncertainty^c, probability^c, proprietary uncertainty^c, recognized ignorance^c, scenario uncertainty^c, scientific uncertainty^c, situational uncertainty^c, societal uncertainty^c, subjective uncertainty^c, total ignorance^c, vagueness^c

uncertainty about gender role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000364

classification to be confirmed

has super-classes: identity uncertainty^c

uncertainty about long-term goal^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000365

classification to be confirmed

has super-classes: identity uncertainty^c

uncertainty about value system^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000366

classification to be confirmed

has super-classes: identity uncertainty^c

uncertainty analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000258

definition to be confirmed

has super-classes: planned process^c
has sub-classes: Checklist for Model Quality Assistance^c, Monte Carlo analysis^c, Numeral Unit Spread Assessment Pedigree^c, Pluralistic fRamework of Integrated uncertainty Management and risk Analysis^c, critical review of assumptions in model^c, error propagation equation^c, expert elicitation^c, scenario analysis^c, sensitivity analysis^c

uncertainty arise condition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000272

definition to be confirmed

has super-classes: process^c
has sub-classes: behavioural variability^c, delay and lack of communication between investigators^c, delayed information^c, diverse populations for study^c, imperfect model^c, incomplete knowledge^c, individual difference^c, inherent randomness of nature^c, instability of event (episodic, self-reversing, spreading)^c, labile and spreading symptom and side effect^c, lack of causal model^c, lack of funding^c, lack of information for comparison^c, lack of institutional security^c, limited understanding^c, material difficult to obtain^c, measurement error^c, multiple effects from single cause^c, observational difficulty^c, operative complication (experimental)^c, partially available data^c, poor management-staff relation^c, rarity of event^c, reacting subject^c, sampling error in the measurement^c, societal variability^c, specialist/nonspecialist handling of the same case^c, sporadic funding^c, subjective judgement^c, technological surprise^c, unclear boundaries of causal phenomena^c, uncontrollable experimental condition^c, uncontrollable procedure^c, unequal status between investigators^c

uncertainty degree level^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000367

definition to be confirmed

has super-classes: data item^c
has sub-classes: definitive certainty level^c, high certainty level^c, highest uncertainty degree^c, intermediate certainty level^c, low uncertainty level^c, very high uncertainty level^c, very low uncertainty level^c

uncertainty elimination^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000271

to be confirmed

has super-classes: process^c

uncertainty quantification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000375

classification to be confirmed

has super-classes: planned process^c

uncertainty response activity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000273

definition to be confirmed

has super-classes: process^c
has sub-classes: division of data along political line for clarity^c, division of labor^c, division of labor along technical/substantive line^c, find exemplars-filter for clear-cut case^c, observations down-focused to smaller area^c, observations limited to available material^c, order data sequentially or by spatial location^c, search for pathognomonic sign^c, segmentation of uncertainty^c, shotgun treatment^c, standardize^c, substitution of taxonomy for diagnosis^c, substitution of theoretical validity for technical consistency^c, utilitarian emphasis on practical result^c

unclear boundaries of causal phenomena^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000281

definition to be confirmed

has super-classes: uncertainty arise condition^c

uncontrollable experimental condition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000283

definition to be confirmed

has super-classes: uncertainty arise condition^c

uncontrollable procedure^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000296

definition to be confirmed

has super-classes: uncertainty arise condition^c

undirected graph^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000198

has super-classes: mathematic graph^c

unequal status between investigators^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000288

definition to be confirmed

has super-classes: uncertainty arise condition^c

unit-variance scaling^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200149

has super-classes: normalization data transformation^c; achieves_planned_objective^op some data normalization objective^c

univariate analysis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000025

has super-classes: inferential statistical data analysis^c
has sub-classes: signal-2-noise statistical analysis^c

urine^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001088

has super-classes: excreta^c

urine assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003043

is equivalent to: assay^c and ((realizes^op some evaluant role^c and (role of^op some urine specimen^c)) and (has_specified_input^op some urine specimen^c and (has role^op some evaluant role^c)))
has super-classes: assay^c
has sub-classes: urine microbiology assay^c

urine assay datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003247

is equivalent to: data item^c and (is_specified_output_of^op some urine assay^c)
has super-classes: data item^c
has sub-classes: urine microbiology datum^c

urine microbiology assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003286

has super-classes: urine assay^c; organism detection assay^c; (realizes^op some evaluant role^c and (role of^op some urine specimen^c)) and (has_specified_input^op some urine specimen^c and (has role^op some evaluant role^c))

urine microbiology datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003248

is equivalent to: organism detection datum^c and (is_specified_output_of^op some urine microbiology assay^c)
has super-classes: organism detection datum^c; urine assay datum^c
has sub-classes: eukaryota in urine datum^c

urine specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000651

has super-classes: specimen from organism^c; is_specified_output_of^op some collecting specimen from organism^c; has role^op some specimen role^c; derives from^op some urine^c

utilitarian emphasis on practical result^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000309

definition to be confirmed

has super-classes: uncertainty response activity^c

vagueness^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000326

classification to be confirmed

has super-classes: uncertainty^c

validity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000060

Here is another definition: Validity is the extend to which an observation reflects the "truth" of the phenomenon being measured. Reference: http://www.uptodate.com/contents/glossary-of-common-biostatistical-and-epidemiological-terms

has super-classes: derived data from inferential statistical analysis^c; is_specified_output_of^op some inferential statistical data analysis^c
has sub-classes: diagnostic validity^c, experimental validity^c, test validity^c

value specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001933

has super-classes: information content entity^c
has sub-classes: RNA Integrity Number value specification^c, categorical value specification^c, number of errors^c, scalar value specification^c

variance calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200120

has super-classes: spread calculation data transformation^c; achieves_planned_objective^op some descriptive statistical calculation objective^c; achieves_planned_objective^op some spread calculation objective^c

variance stabilizing transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200022

has super-classes: normalization data transformation^c; achieves_planned_objective^op some data normalization objective^c

Venn diagram^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000181

has super-classes: graph^c

very high uncertainty level^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000372

definition to be confirmed

has super-classes: uncertainty degree level^c

very low uncertainty level^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000374

definition to be confirmed

has super-classes: uncertainty degree level^c

viability^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000169

has super-classes: organismal quality^c
has sub-classes: alive^c, dead^c

violin plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000154

has super-classes: graph^c

virus in blood datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003262

is equivalent to: blood microbiology datum^c and (is about^op some Viruses^c)
has super-classes: blood microbiology datum^c

virus in feces datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003266

is equivalent to: feces microbiology datum^c and (is about^op some Viruses^c)
has super-classes: feces microbiology datum^c

virus in induced sputum datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003270

is equivalent to: induced sputum microbiology datum^c and (is about^op some Viruses^c)
has super-classes: induced sputum microbiology datum^c

virus in lung datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003274

is equivalent to: lung microbiology datum^c and (is about^op some Viruses^c)
has super-classes: lung microbiology datum^c

virus in nasopharyngeal or oropharyngeal swab datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003277

is equivalent to: nasopharyngeal or oropharyngeal swab microbiology datum^c and (is about^op some Viruses^c)
has super-classes: nasopharyngeal or oropharyngeal swab microbiology datum^c

virus in pleural fluid datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003280

is equivalent to: pleural fluid microbiology datum^c and (is about^op some Viruses^c)
has super-classes: pleural fluid microbiology datum^c

Viruses^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10239

has super-classes: organism^c

volcano plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000126

has super-classes: scatter plot^c

web crawling software^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000175

has super-classes: software^c; has part^op some differential expression analysis objective^c

weighted data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000014

has super-classes: derived data from inferential statistical analysis^c; is_specified_output_of^op some inferential statistical data analysis^c
has sub-classes: weighted kappa^c

weighted kappa^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000113

has super-classes: weighted data^c

weighted network graph construction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200127

has super-classes: network graph construction^c

Westfall and Young family wise error rate correction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200092

has super-classes: family wise error rate correction method^c; has_specified_input^op some p-value^c; has_specified_output^op some FWER adjusted p-value^c; achieves_planned_objective^op some multiple testing correction objective^c

Wilcoxon signed-rank test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000148

has super-classes: non-parametric test^c

wild type allele information^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001369

has super-classes: allele information^c

wild type organism genotype information^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001294

has super-classes: genotype information^c

Wilk's lambda distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000017

has super-classes: probability distribution^c

Wilkinson dot plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000125

has super-classes: dot plot^c

within subject comparison statistical test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000202

has super-classes: statistical hypothesis test^c
has sub-classes: paired t-test^c, repeated measure ANOVA^c

Yates' chi-squared test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBCS_0000245

has super-classes: chi square test^c

zero-dimensional continuant fiat boundary^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000147

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: continuant fiat boundary^c
is disjoint with: one-dimensional continuant fiat boundary^c

zero-dimensional spatial region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000018

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: spatial region^c
is disjoint with: three-dimensional spatial region^c

zero-dimensional temporal region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000148

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: temporal region^c
is disjoint with: one-dimensional temporal region^c

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni .

OBCS: Ontology of Biological and Clinical Statistics

Table of Content

Introduction

Classes

2x2 contingency tablec back to ToC or Class ToC

3D structural organization datumc back to ToC or Class ToC

50% dissociation of binding temperature (Tm)c back to ToC or Class ToC

absolute riskc back to ToC or Class ToC

accuracyc back to ToC or Class ToC

action specificationc back to ToC or Class ToC

adapter sequence datac back to ToC or Class ToC

adapter-sequence trimmingc back to ToC or Class ToC

adapter-trimmed sequence datac back to ToC or Class ToC

adding a material entity into a targetc back to ToC or Class ToC

adding material objectivec back to ToC or Class ToC

administration of material to specimenc back to ToC or Class ToC

agec back to ToC or Class ToC

age measurement datumc back to ToC or Class ToC

age since birth at time of enrollmentc back to ToC or Class ToC

age since birth at time of visitc back to ToC or Class ToC

age since birth measurement datumc back to ToC or Class ToC

age since coitus measurement datumc back to ToC or Class ToC

age since culture seeding measurement datumc back to ToC or Class ToC

age since eclosion measurement datumc back to ToC or Class ToC

age since egg laying measurement datumc back to ToC or Class ToC

age since fertilization measurement datumc back to ToC or Class ToC

age since germination measurement datumc back to ToC or Class ToC

age since hatching measurement datumc back to ToC or Class ToC

age since planting measurement datumc back to ToC or Class ToC

age since sowing measurement datumc back to ToC or Class ToC

age when gave birth to first childc back to ToC or Class ToC

agglomerative hierarchical clusteringc back to ToC or Class ToC

algorithmc back to ToC or Class ToC

aligned sequence datac back to ToC or Class ToC

alivec back to ToC or Class ToC

allele informationc back to ToC or Class ToC

altitude measurement datumc back to ToC or Class ToC

Altman box and whisker plotc back to ToC or Class ToC

ambiguityc back to ToC or Class ToC

analysis subset ontology modulec back to ToC or Class ToC

analyte assayc back to ToC or Class ToC

analyte measurement objectivec back to ToC or Class ToC

anatomical clusterc back to ToC or Class ToC

anatomical structurec back to ToC or Class ToC

ANOVAc back to ToC or Class ToC

Anscombe transformationc back to ToC or Class ToC

antigen specific antibodies assayc back to ToC or Class ToC

antigen specific antibodies assay datumc back to ToC or Class ToC

antigen specific antibodies in blood assay datumc back to ToC or Class ToC

antigen specific antibodies in milk assay datumc back to ToC or Class ToC

Archaeac back to ToC or Class ToC

arithmetic mean calculationc back to ToC or Class ToC

armc back to ToC or Class ToC

arterial bloodc back to ToC or Class ToC

arterial blood specimenc back to ToC or Class ToC

aspiration specimen collectionc back to ToC or Class ToC

assayc back to ToC or Class ToC

assay objectivec back to ToC or Class ToC

assemblyc back to ToC or Class ToC

assigning gene property based on phenotypic assessmentc back to ToC or Class ToC

average depth of sequence coveragec back to ToC or Class ToC

average linkage hierarchical clusteringc back to ToC or Class ToC

average valuec back to ToC or Class ToC

averaging data transformationc back to ToC or Class ToC

averaging objectivec back to ToC or Class ToC

axillary temperature measurement datumc back to ToC or Class ToC

b cell epitope predictionc back to ToC or Class ToC

b transformationc back to ToC or Class ToC

background corrected data setc back to ToC or Class ToC

background corrected data visualizationc back to ToC or Class ToC

background correction data transformationc back to ToC or Class ToC

background correction objectivec back to ToC or Class ToC

Bacteriac back to ToC or Class ToC

bacteria in blood datumc back to ToC or Class ToC

bacteria in endotracheal tube aspirate datumc back to ToC or Class ToC

bacteria in feces datumc back to ToC or Class ToC

bacteria in induced sputum datumc back to ToC or Class ToC

bacteria in lung datumc back to ToC or Class ToC

bacteria in nasopharyngeal or oropharyngeal swab datumc back to ToC or Class ToC

bacteria in pleural fluid datumc back to ToC or Class ToC

2x2 contingency table^c back to ToC or Class ToC

3D structural organization datum^c back to ToC or Class ToC

50% dissociation of binding temperature (Tm)^c back to ToC or Class ToC

absolute risk^c back to ToC or Class ToC

accuracy^c back to ToC or Class ToC

action specification^c back to ToC or Class ToC

adapter sequence data^c back to ToC or Class ToC

adapter-sequence trimming^c back to ToC or Class ToC

adapter-trimmed sequence data^c back to ToC or Class ToC

adding a material entity into a target^c back to ToC or Class ToC

adding material objective^c back to ToC or Class ToC

administration of material to specimen^c back to ToC or Class ToC

age^c back to ToC or Class ToC

age measurement datum^c back to ToC or Class ToC

age since birth at time of enrollment^c back to ToC or Class ToC

age since birth at time of visit^c back to ToC or Class ToC

age since birth measurement datum^c back to ToC or Class ToC

age since coitus measurement datum^c back to ToC or Class ToC

age since culture seeding measurement datum^c back to ToC or Class ToC

age since eclosion measurement datum^c back to ToC or Class ToC

age since egg laying measurement datum^c back to ToC or Class ToC

age since fertilization measurement datum^c back to ToC or Class ToC

age since germination measurement datum^c back to ToC or Class ToC

age since hatching measurement datum^c back to ToC or Class ToC

age since planting measurement datum^c back to ToC or Class ToC

age since sowing measurement datum^c back to ToC or Class ToC

age when gave birth to first child^c back to ToC or Class ToC

agglomerative hierarchical clustering^c back to ToC or Class ToC

algorithm^c back to ToC or Class ToC

aligned sequence data^c back to ToC or Class ToC

alive^c back to ToC or Class ToC

allele information^c back to ToC or Class ToC

altitude measurement datum^c back to ToC or Class ToC

Altman box and whisker plot^c back to ToC or Class ToC

ambiguity^c back to ToC or Class ToC

analysis subset ontology module^c back to ToC or Class ToC

analyte assay^c back to ToC or Class ToC

analyte measurement objective^c back to ToC or Class ToC

anatomical cluster^c back to ToC or Class ToC

anatomical structure^c back to ToC or Class ToC

ANOVA^c back to ToC or Class ToC

Anscombe transformation^c back to ToC or Class ToC

antigen specific antibodies assay^c back to ToC or Class ToC

antigen specific antibodies assay datum^c back to ToC or Class ToC

antigen specific antibodies in blood assay datum^c back to ToC or Class ToC

antigen specific antibodies in milk assay datum^c back to ToC or Class ToC

Archaea^c back to ToC or Class ToC

arithmetic mean calculation^c back to ToC or Class ToC

arm^c back to ToC or Class ToC

arterial blood^c back to ToC or Class ToC

arterial blood specimen^c back to ToC or Class ToC

aspiration specimen collection^c back to ToC or Class ToC

assay^c back to ToC or Class ToC

assay objective^c back to ToC or Class ToC

assembly^c back to ToC or Class ToC

assigning gene property based on phenotypic assessment^c back to ToC or Class ToC

average depth of sequence coverage^c back to ToC or Class ToC

average linkage hierarchical clustering^c back to ToC or Class ToC

average value^c back to ToC or Class ToC

averaging data transformation^c back to ToC or Class ToC

averaging objective^c back to ToC or Class ToC

axillary temperature measurement datum^c back to ToC or Class ToC

b cell epitope prediction^c back to ToC or Class ToC

b transformation^c back to ToC or Class ToC

background corrected data set^c back to ToC or Class ToC

background corrected data visualization^c back to ToC or Class ToC

background correction data transformation^c back to ToC or Class ToC

background correction objective^c back to ToC or Class ToC

Bacteria^c back to ToC or Class ToC

bacteria in blood datum^c back to ToC or Class ToC

bacteria in endotracheal tube aspirate datum^c back to ToC or Class ToC

bacteria in feces datum^c back to ToC or Class ToC

bacteria in induced sputum datum^c back to ToC or Class ToC

bacteria in lung datum^c back to ToC or Class ToC

bacteria in nasopharyngeal or oropharyngeal swab datum^c back to ToC or Class ToC

bacteria in pleural fluid datum^c back to ToC or Class ToC

balanced design^c back to ToC or Class ToC

bar chart^c back to ToC or Class ToC

bartlett's test^c back to ToC or Class ToC

base ontology module^c back to ToC or Class ToC