Ontology for Biomedical Investigations

A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.

has super-classes: continuant^c
has sub-classes: information content entity^c
is in domain of: is concretized as^op
is in range of: concretizes^op
is disjoint with: independent continuant^c, specifically dependent continuant^c, independent continuant^c, specifically dependent continuant^c

geographic location^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GAZ_00000448

has super-classes: site^c
is also defined as: named individual

Homo sapiens^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9606

has super-classes: Euarchontoglires^c

human subject enrollment^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600004

has super-classes: selection^c; has part^op some informed consent process^c; realizes^op some concretizes^op some eligibility criterion^c; has specified input^op some population^c and (has part^op some Homo sapiens^c); has specified output^op some (population^c and (has part^op some Homo sapiens^c)) and (has role^op some participant under investigation role^c)

immaterial entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000141

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: independent continuant^c
has sub-classes: site^c
is disjoint with: material entity^c

independent continuant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000004

is defined by: http://purl.obolibrary.org/obo/bfo.owl

A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.

has super-classes: continuant^c
has sub-classes: immaterial entity^c, material entity^c
is in domain of: has disposition^op, has function^op, has role^op
is disjoint with: specifically dependent continuant^c, generically dependent continuant^c, specifically dependent continuant^c, generically dependent continuant^c

information acquisition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600013

has super-classes: acquisition^c; has specified output^op some information content entity^c
is disjoint with: assay^c, data transformation^c

information content entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000030

has super-classes: generically dependent continuant^c
has sub-classes: centrally registered identifier registry^c, conclusion based on data^c, data item^c, datum label^c, directive information entity^c, document^c, symbol^c, testable hypothesis^c, value specification^c
is in domain of: has value specification^op

informed consent process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000810

has super-classes: planned process^c; has specified input^op some Homo sapiens^c; has participant^op some has role^op some investigation agent role^c

investigation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000066

has super-classes: planned process^c; has part^op some documenting^c; has part^op some drawing a conclusion based on data^c; has part^op some study design execution^c; has part^op some planning^c and (has specified output^op some study design^c)

investigation agent role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000202

Philly2013: Historically, this role would have been borne only by humans or organizations. However, we now also want to enable investigations run by robot scientists such as ADAM (King et al, Science, 2009)

is equivalent to: role^c and (characteristic of^op some has characteristic^op some concretizes^op some objective_achieved_by^op some part of^op some investigation^c)
has super-classes: role^c; realized in^op only investigation^c

Mammalia^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_40674

has super-classes: Amniota^c
has sub-classes: Euarchontoglires^c

material acquisition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600010

has super-classes: acquisition^c; has specified output^op some material entity^c
is disjoint with: material processing^c

material anatomical entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000465

has super-classes: material entity^c

material entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000040

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: independent continuant^c
has sub-classes: anatomical cluster^c, cell^c, cellular_component^c, collection of specimens^c, environmental material^c, material anatomical entity^c, material information bearer^c, molecular entity^c, organism^c, organization^c, population^c, processed material^c, specimen^c
is disjoint with: immaterial entity^c

material information bearer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000178

has super-classes: material entity^c

material processing^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000094

is equivalent to: achieves_planned_objective^op some material transformation objective^c
has super-classes: planned process^c; has specified output^op some processed material^c; has specified input^op only material entity^c
is disjoint with: material acquisition^c

material transformation objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000456

has super-classes: objective specification^c

measure function^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000453

has super-classes: function^c; function of^op some processed material^c; realized in^op only has specified output^op some measurement datum^c

measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000109

has super-classes: data item^c; has value specification^op some value specification^c

measurement device^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000832

is equivalent to: device^c and (has function^op some measure function^c)
has super-classes: device^c

measurement unit label^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000003

has super-classes: datum label^c

Metazoa^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33208

has super-classes: Opisthokonta^c
has sub-classes: Bilateria^c

molecular entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_23367

has super-classes: material entity^c

molecular_function^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0003674

has super-classes: process^c

objective specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000005

has super-classes: directive information entity^c
has sub-classes: assay objective^c, data transformation objective^c, material transformation objective^c, specimen collection objective^c
is in domain of: objective_achieved_by^op
is in range of: achieves_planned_objective^op

obsolescence reason specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000225

is equivalent to: { failed exploratory term , placeholder removed , terms merged , term imported , term split , out of scope }
has super-classes: data about an ontology part^c
has members: failed exploratory termⁿⁱ, out of scopeⁿⁱ, placeholder removedⁿⁱ, term importedⁿⁱ, term splitⁿⁱ, terms mergedⁿⁱ

occurrent^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000003

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: entity^c
has sub-classes: process^c
is in domain of: has participant^op
is in range of: participates in^op
is disjoint with: continuant^c

Opisthokonta^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33154

has super-classes: Eukaryota^c
has sub-classes: Metazoa^c

organism^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100026

is equivalent to: Viruses^c or Bacteria^c or Archaea^c or Eukaryota^c
has super-classes: material entity^c
has sub-classes: Archaea^c, Bacteria^c, Eukaryota^c, Viruses^c

organization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000245

has super-classes: material entity^c

participant under investigation role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000097

has super-classes: role^c; realized in^op only study design execution^c

plan specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000104

has super-classes: directive information entity^c
has sub-classes: algorithm^c, protocol^c, study design^c

planned process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000011

is equivalent to: realizes^op some concretizes^op some plan specification^c
has super-classes: process^c
has sub-classes: assay^c, data transformation^c, documenting^c, drawing a conclusion based on data^c, informed consent process^c, investigation^c, material processing^c, selection^c, specimen collection process^c, study design execution^c
is in domain of: achieves_planned_objective^op, has specified input^op, has specified output^op
is in range of: is specified input of^op, is specified output of^op, objective_achieved_by^op
is disjoint with: biological_process^c

planning^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000339

has super-classes: process^c; process^c and (has participant^op some plan specification^c)
is disjoint with: assay^c

population^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000181

has super-classes: material entity^c

primary cultured cell^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000001

has super-classes: cultured cell^c

process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000015

is defined by: http://purl.obolibrary.org/obo/bfo.owl

An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.

has super-classes: occurrent^c
has sub-classes: biological_process^c, molecular_function^c, planned process^c, planning^c
is in domain of: realizes^op
is in range of: realized in^op

processed material^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000047

is equivalent to: material entity^c and (is specified output of^op some material processing^c)
has super-classes: material entity^c
has sub-classes: device^c, experimentally modified cell in vitro^c, processed specimen^c, reagent^c

processed specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000953

is equivalent to: specimen^c and (processed material^c and specimen^c)
has super-classes: processed material^c; specimen^c

protocol^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000272

has super-classes: plan specification^c

quality^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000019

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: specifically dependent continuant^c
is in range of: has quality^op
is disjoint with: realizable entity^c

reactant role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0003610

has super-classes: role^c
has sub-classes: reagent role^c

reagent^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001879

(copied from ReO) Reagents are distinguished from devices/instruments that also serve as facilitators in scientific techniques by the fact that reagents are chemical or biological in nature and necessarily participate in or have parts that participate in some chemical interaction or reaction during their intended participation in some technique. By contrast, devices do not participate in a chemical reaction/interaction during the technique. Reagents are distinguished from study subjects/evaluants in that study subjects and evaluants are that about which conclusions are drawn and knowledge is sought in an investigation - while reagents, by definition, are not. It should be noted, however, that reagent and study subject/evaluant roles can be borne by instances of the same type of material entity - but a given instance can only realize one of these roles in the execution of a given assay. For example, taq polymerase can bear a reagent role or an evaluant role. In a DNA sequencing assay aimed at generating sequence data about some plasmid, the reagent role of the taq polymerase is realized. In an assay to evaluate the quality of the taq polymerase itself, the evaluant/study subject role of the taq is realized, but not the reagent role since the taq is the subject about which data is generated. In regard to the statement that reagents are 'distinct' from the specified outputs of a technique: note that a reagent may be incorporated into a material output of a technique, as long as the IDENTITY of this output is distinct from that of the bearer of the reagent role. For example, dNTPs input into a PCR are reagents that become part of the material output of this technique, but this output has a new identity (ie that of a 'nucleic acid molecule') that is distinct from the identity of the dNTPs that comprise it. Similarly, a biotin molecule input into a cell labeling technique are reagents that become part of the specified output, but the identity of the output is that of some modified cell specimen which shares identity with the input unmodified cell specimen, and not with the biotin label. Thus, we see that an important criteria of 'reagent-ness' is that it is a facilitator, and not the primary focus of an investigation or material processing technique (ie not the specified subject/evaluant about which knowledge is sought, or the specified output material of the technique).

is equivalent to: material entity^c and (has role^op some reagent role^c)
has super-classes: processed material^c; is specified output of^op some material processing^c

reagent role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000086

(copied from ReO) Reagents are distinguished from instruments or devices that also participate in scientific techniques by the fact that reagents are chemical or biological in nature and necessarily participate in or have parts that participate in some chemical interaction or reaction during their intended participation in some technique. By contrast, instruments do not participate in a chemical reaction/interaction during the technique. Reagents are distinguished from study subjects/evaluants in that study subjects and evaluants are that about which conclusions are drawn and knowledge is sought in an investigation - while reagents, by definition, are not. It should be noted, however, that reagent and study subject/evaluant roles can be borne by instances of the same type of material entity - but a given instance will realize only one of these roles in the execution of a given assay or technique. For example, taq polymerase can bear a reagent role or an evaluant role. In a DNA sequencing assay aimed at generating sequence data about some plasmid, the reagent role of the taq polymerase is realized. In an assay to evaluate the quality of the taq polymerase itself, the evaluant/study subject role of the taq is realized, but not the reagent role since the taq is the subject about which data is generated. In regard to the statement that reagents are 'distinct' from the specified outputs of a technique, note that a reagent may be incorporated into a material output of a technique, as long as the IDENTITY of this output is distinct from that of the bearer of the reagent role. For example, dNTPs input into a PCR are reagents that become part of the material output of this technique, but this output has a new identity (ie that of a 'nucleic acid molecule') that is distinct from the identity of the dNTPs that comprise it. Similarly, a biotin molecule input into a cell labeling technique are reagents that become part of the specified output, but the identity of the output is that of some modified cell specimen which shares identity with the input unmodified cell specimen, and not with the biotin label. Thus, we see that an important criteria of 'reagent-ness' is that it is a facilitator, and not the primary focus of an investigation or material processing technique (ie not the specified subject/evaluant about which knowledge is sought, or the specified output material of the technique).

has super-classes: reactant role^c

realizable entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000017

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: specifically dependent continuant^c
has sub-classes: disposition^c, role^c
is in domain of: realized in^op
is in range of: realizes^op
is disjoint with: quality^c

role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000023

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: realizable entity^c
has sub-classes: evaluant role^c, investigation agent role^c, participant under investigation role^c, reactant role^c, specimen role^c
is in range of: has role^op
is disjoint with: disposition^c

secondary cultured cell^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001866

A secondary cultured cell has been passaged in culture or is a descendant of such a cell that is derived through propagation in culture.

has super-classes: cultured cell^c; derives from^op some primary cultured cell^c
has sub-classes: cell line cell^c

selection^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001928

is equivalent to: realizes^op some concretizes^op some selection criterion^c
has super-classes: planned process^c
has sub-classes: acquisition^c, human subject enrollment^c

selection criterion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001755

has super-classes: directive information entity^c
has sub-classes: eligibility criterion^c

site^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000029

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: immaterial entity^c
has sub-classes: geographic location^c

specifically dependent continuant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000020

is defined by: http://purl.obolibrary.org/obo/bfo.owl

A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.

has super-classes: continuant^c
has sub-classes: quality^c, realizable entity^c
is in domain of: concretizes^op
is in range of: has characteristic^op, is concretized as^op
is disjoint with: independent continuant^c, generically dependent continuant^c, independent continuant^c, generically dependent continuant^c

specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100051

is equivalent to: material entity^c and (has role^op some specimen role^c)
has super-classes: material entity^c
has sub-classes: processed specimen^c, specimen from organism^c

specimen collection objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000684

has super-classes: objective specification^c

specimen collection process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000659

is equivalent to: planned process^c and (achieves_planned_objective^op some specimen collection objective^c)
has super-classes: planned process^c; has specified input^op some material entity^c; has specified output^op some specimen^c

specimen from organism^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001479

is equivalent to: specimen^c and (is specified output of^op some specimen collection process^c and (has specified input^op some organism^c or material anatomical entity^c or anatomical cluster^c))
has super-classes: specimen^c
has sub-classes: cell specimen^c

specimen role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000112

has super-classes: role^c; characteristic of^op some material entity^c and (is specified output of^op some specimen collection process^c)

study design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500000

has super-classes: plan specification^c; has part^op some protocol^c

study design controlled variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000785

has super-classes: directive information entity^c; part of^op some study design^c

study design dependent variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000751

has super-classes: directive information entity^c; part of^op some study design^c

study design execution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000471

is equivalent to: planned process^c and (realizes^op some concretizes^op some study design^c)
has super-classes: planned process^c

study design independent variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000750

has super-classes: directive information entity^c; part of^op some study design^c

symbol^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000028

has super-classes: information content entity^c
has sub-classes: centrally registered identifier symbol^c

testable hypothesis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001908

has super-classes: information content entity^c

Tetrapoda^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32523

has super-classes: Euteleostomi^c
has sub-classes: Amniota^c

value specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001933

has super-classes: information content entity^c
is in range of: has value specification^op

Vertebrata <vertebrates>^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7742

has super-classes: Bilateria^c
has sub-classes: Euteleostomi^c

Viruses^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10239

has super-classes: organism^c

Object Properties

achieves_planned_objective^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000417

has domain: planned process^c
has range: objective specification^c
is inverse of: objective_achieved_by^op

characteristic of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000052

Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.

has characteristics : functional

has sub-properties: disposition of^op, function of^op, quality of^op, role of^op
is inverse of: has characteristic^op

concretizes^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000059

has domain: specifically dependent continuant^c
has range: generically dependent continuant^c
is inverse of: is concretized as^op

denoted by^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000235

denotes^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000219

has super-properties: is about^op

derives from^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001000

is inverse of: derives into^op

derives into^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001001

is inverse of: derives from^op

disposition of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000092

This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.

has super-properties: characteristic of^op
is inverse of: has disposition^op

function of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000079

has super-properties: characteristic of^op
has domain: function^c
is inverse of: has function^op

has characteristic^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000053

has characteristics : inverse functional

has sub-properties: has disposition^op, has function^op, has quality^op, has role^op
has range: specifically dependent continuant^c
is inverse of: characteristic of^op

has disposition^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000091

has super-properties: has characteristic^op
has domain: independent continuant^c
has range: disposition^c
is inverse of: disposition of^op

has function^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000085

has super-properties: has characteristic^op
has domain: independent continuant^c
has range: function^c
is inverse of: function of^op

has member^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002351

has characteristics : irreflexive

has super-properties: has part^op
is inverse of: member of^op

has part^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000051

has characteristics : transitive

has sub-properties: has member^op, has value specification^op
is inverse of: part of^op

has participant^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000057

has sub-properties: has specified input^op, has specified output^op
has domain: occurrent^c
has range: continuant^c
is inverse of: participates in^op

has quality^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000086

has super-properties: has characteristic^op
has range: quality^c
is inverse of: quality of^op

has role^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000087

has super-properties: has characteristic^op
has domain: independent continuant^c
has range: role^c
is inverse of: role of^op

has specified input^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000293

has super-properties: has participant^op
has domain: planned process^c
is inverse of: is specified input of^op

has specified output^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000299

has super-properties: has participant^op
has domain: planned process^c
is inverse of: is specified output of^op

has value specification^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001938

has super-properties: has part^op
has domain: information content entity^c
has range: value specification^c

is about^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000136

has sub-properties: denotes^op

is concretized as^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000058

has domain: generically dependent continuant^c
has range: specifically dependent continuant^c
is inverse of: concretizes^op

is specified input of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000295

has super-properties: participates in^op
has range: planned process^c
is inverse of: has specified input^op

is specified output of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000312

has super-properties: participates in^op
has range: planned process^c
is inverse of: has specified output^op

is_supported_by_data^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000124

has domain: conclusion based on data^c
has range: data item^c

member of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002350

has super-properties: part of^op
is inverse of: has member^op

objective_achieved_by^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000833

has domain: objective specification^c
has range: planned process^c
is inverse of: achieves_planned_objective^op

part of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000050

has characteristics : transitive

has sub-properties: member of^op
is inverse of: has part^op

participates in^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000056

has sub-properties: is specified input of^op, is specified output of^op
has domain: continuant^c
has range: occurrent^c
is inverse of: has participant^op

quality of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000080

has super-properties: characteristic of^op
is inverse of: has quality^op

realized in^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000054

is defined by: http://purl.obolibrary.org/obo/bfo.owl

Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process

has domain: realizable entity^c
has range: process^c
is inverse of: realizes^op

realizes^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000055

is defined by: http://purl.obolibrary.org/obo/iao.owl

Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process

has domain: process^c
has range: realizable entity^c
is inverse of: realized in^op

role of^op back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000081

has super-properties: characteristic of^op
is inverse of: has role^op

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni .

Ontology for Biomedical Investigations

Abstract

Table of Content

Introduction

Classes

acquisitionc back to ToC or Class ToC

algorithmc back to ToC or Class ToC

Amniotac back to ToC or Class ToC

analyte assayc back to ToC or Class ToC

analyte measurement objectivec back to ToC or Class ToC

anatomical clusterc back to ToC or Class ToC

Archaeac back to ToC or Class ToC

assayc back to ToC or Class ToC

assay objectivec back to ToC or Class ToC

Bacteriac back to ToC or Class ToC

Bilateriac back to ToC or Class ToC

biological_processc back to ToC or Class ToC

cellc back to ToC or Class ToC

cell line cellc back to ToC or Class ToC

cell specimenc back to ToC or Class ToC

cellular_componentc back to ToC or Class ToC

centrally registered identifier registryc back to ToC or Class ToC

centrally registered identifier symbolc back to ToC or Class ToC

collection of specimensc back to ToC or Class ToC

conclusion based on datac back to ToC or Class ToC

continuantc back to ToC or Class ToC

cultured cellc back to ToC or Class ToC

curation status specificationc back to ToC or Class ToC

cytometry assayc back to ToC or Class ToC

data about an ontology partc back to ToC or Class ToC

data itemc back to ToC or Class ToC

data setc back to ToC or Class ToC

data transformationc back to ToC or Class ToC

data transformation objectivec back to ToC or Class ToC

datum labelc back to ToC or Class ToC

denotator typec back to ToC or Class ToC

devicec back to ToC or Class ToC

directive information entityc back to ToC or Class ToC

diseasec back to ToC or Class ToC

disease coursec back to ToC or Class ToC

dispositionc back to ToC or Class ToC

documentc back to ToC or Class ToC

documentingc back to ToC or Class ToC

drawing a conclusion based on datac back to ToC or Class ToC

eligibility criterionc back to ToC or Class ToC

entityc back to ToC or Class ToC

environmental materialc back to ToC or Class ToC

Euarchontogliresc back to ToC or Class ToC

Eukaryotac back to ToC or Class ToC

Euteleostomic back to ToC or Class ToC

evaluant rolec back to ToC or Class ToC

experimentally modified cell in vitroc back to ToC or Class ToC

functionc back to ToC or Class ToC

generically dependent continuantc back to ToC or Class ToC

geographic locationc back to ToC or Class ToC

Homo sapiensc back to ToC or Class ToC

human subject enrollmentc back to ToC or Class ToC

immaterial entityc back to ToC or Class ToC

independent continuantc back to ToC or Class ToC

information acquisitionc back to ToC or Class ToC

information content entityc back to ToC or Class ToC

informed consent processc back to ToC or Class ToC

investigationc back to ToC or Class ToC

investigation agent rolec back to ToC or Class ToC

Mammaliac back to ToC or Class ToC

material acquisitionc back to ToC or Class ToC

material anatomical entityc back to ToC or Class ToC

material entityc back to ToC or Class ToC

material information bearerc back to ToC or Class ToC

material processingc back to ToC or Class ToC

material transformation objectivec back to ToC or Class ToC

measure functionc back to ToC or Class ToC

measurement datumc back to ToC or Class ToC

measurement devicec back to ToC or Class ToC

measurement unit labelc back to ToC or Class ToC

Metazoac back to ToC or Class ToC

molecular entityc back to ToC or Class ToC

molecular_functionc back to ToC or Class ToC

objective specificationc back to ToC or Class ToC

obsolescence reason specificationc back to ToC or Class ToC

acquisition^c back to ToC or Class ToC

algorithm^c back to ToC or Class ToC

Amniota^c back to ToC or Class ToC

analyte assay^c back to ToC or Class ToC

analyte measurement objective^c back to ToC or Class ToC

anatomical cluster^c back to ToC or Class ToC

Archaea^c back to ToC or Class ToC

assay^c back to ToC or Class ToC

assay objective^c back to ToC or Class ToC

Bacteria^c back to ToC or Class ToC

Bilateria^c back to ToC or Class ToC

biological_process^c back to ToC or Class ToC

cell^c back to ToC or Class ToC

cell line cell^c back to ToC or Class ToC

cell specimen^c back to ToC or Class ToC

cellular_component^c back to ToC or Class ToC

centrally registered identifier registry^c back to ToC or Class ToC

centrally registered identifier symbol^c back to ToC or Class ToC

collection of specimens^c back to ToC or Class ToC

conclusion based on data^c back to ToC or Class ToC

continuant^c back to ToC or Class ToC

cultured cell^c back to ToC or Class ToC

curation status specification^c back to ToC or Class ToC

cytometry assay^c back to ToC or Class ToC

data about an ontology part^c back to ToC or Class ToC

data item^c back to ToC or Class ToC

data set^c back to ToC or Class ToC

data transformation^c back to ToC or Class ToC

data transformation objective^c back to ToC or Class ToC

datum label^c back to ToC or Class ToC

denotator type^c back to ToC or Class ToC

device^c back to ToC or Class ToC

directive information entity^c back to ToC or Class ToC

disease^c back to ToC or Class ToC

disease course^c back to ToC or Class ToC

disposition^c back to ToC or Class ToC

document^c back to ToC or Class ToC

documenting^c back to ToC or Class ToC

drawing a conclusion based on data^c back to ToC or Class ToC

eligibility criterion^c back to ToC or Class ToC

entity^c back to ToC or Class ToC

environmental material^c back to ToC or Class ToC

Euarchontoglires^c back to ToC or Class ToC

Eukaryota^c back to ToC or Class ToC

Euteleostomi^c back to ToC or Class ToC

evaluant role^c back to ToC or Class ToC

experimentally modified cell in vitro^c back to ToC or Class ToC

function^c back to ToC or Class ToC

generically dependent continuant^c back to ToC or Class ToC