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Ontology for General Medical Science

Metadata

URI
http://purl.obolibrary.org/obo/ogms.owl
Creator(s)
Alan Ruttenberg
Albert Goldfain
Anand Kumar
Barry Smith
Bill Hogan
Brian Aevermann
Cornelius Rosse
Daniel Merico
Jie Zheng
Lindsay Cowell
Richard Scheuermann
Sivaram Arabandi
Werner Ceusters
Version Information
2021-08-19
Version URI
http://purl.obolibrary.org/obo/ogms/2021-08-19/ogms.owl
License
http://creativecommons.org/licenses/by/4.0/
Ontology RDF
RDF (turtle)

Description

The Ontology for General Medical Science (OGMS) is based on the papers Toward an Ontological Treatment of Disease and Diagnosis and On Carcinomas and Other Pathological Entities. The ontology attempts to address some of the issues raised at the Workshop on Ontology of Diseases (Dallas, TX). OGMS was formerly called the clinical phenotype ontology. Terms from OGMS hang from the Basic Formal Ontology.

The latest version of OGMS is available at http://purl.obolibrary.org/obo/ogms.owl

The OGMS developer site is https://github.com/OGMS/ogms

If you are interested in participating in the development of OGMS, please send email to baeverma

Table of Contents

  1. Classes
  2. Annotation Properties
  3. Named Individuals
  4. Namespaces
  5. Legend

Overview

Pictures say 1,000 words
Figure 1: Ontology overview

Classes ↑

entityc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000001
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes owl:Thingc
Sub-classes obo:BFO_0000003c
obo:OGMS_0000067c
obo:BFO_0000002c

continuantc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000002
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000001c
Sub-classes obo:BFO_0000031c
obo:BFO_0000020c
obo:BFO_0000004c

occurrentc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000003
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000001c
Sub-classes obo:BFO_0000008c
obo:BFO_0000015c
obo:BFO_0000011c
obo:BFO_0000035c

independent continuantc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000004
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000002c
Sub-classes obo:BFO_0000040c
obo:BFO_0000141c

spatial regionc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000006
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000141c
Sub-classes obo:BFO_0000009c
obo:BFO_0000018c
obo:BFO_0000026c
obo:BFO_0000028c

temporal regionc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000008
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000003c
Sub-classes obo:BFO_0000148c
obo:BFO_0000038c

two-dimensional spatial regionc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000009
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000006c

spatiotemporal regionc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000011
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000003c

processc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000015
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000003c
Sub-classes obo:OGMS_0000063c
obo:OGMS_0000092c
obo:OGMS_0000020c
obo:OGMS_0000060c
obo:OBI_0000278c
obo:BFO_0000182c
obo:OGMS_0000091c
obo:BFO_0000144c
obo:OBI_0000011c
obo:OGMS_0000059c
obo:OGMS_0000141c

dispositionc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000016
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000017c
Sub-classes obo:OGMS_0000032c
obo:OGMS_0000031c
obo:BFO_0000034c
obo:OGMS_0000030c

realizable entityc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000017
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000020c
Sub-classes obo:BFO_0000016c
obo:BFO_0000023c

zero-dimensional spatial regionc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000018
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000006c

qualityc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000019
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000020c
Sub-classes obo:OGMS_0000122c
obo:BFO_0000145c
obo:OGMS_0000142c
obo:OGMS_0000022c
obo:OGMS_0000086c
obo:OGMS_0000023c
obo:OGMS_0000039c

specifically dependent continuantc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000020
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000002c
Sub-classes obo:BFO_0000017c
obo:BFO_0000019c

rolec # Classes

URI http://purl.obolibrary.org/obo/BFO_0000023
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000017c
Sub-classes obo:OGMS_0000148c

fiat object partc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000024
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000040c

one-dimensional spatial regionc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000026
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000006c

object aggregatec # Classes

URI http://purl.obolibrary.org/obo/BFO_0000027
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000040c

three-dimensional spatial regionc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000028
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000006c

sitec # Classes

URI http://purl.obolibrary.org/obo/BFO_0000029
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000141c

objectc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000030
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000040c

generically dependent continuantc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000031
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000002c
Sub-classes obo:OGMS_0000074c
obo:IAO_0000030c

functionc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000034
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000016c

process boundaryc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000035
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000003c

one-dimensional temporal regionc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000038
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000008c

material entityc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000040
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000004c
Sub-classes obo:BFO_0000030c
obo:OGMS_0000079c
obo:OGMS_0000084c
obo:OGMS_0000045c
obo:OGMS_0000078c
obo:OGMS_0000077c
obo:OGMS_0000089c
obo:OGMS_0000087c
obo:IDO_0000586c
obo:BFO_0000024c
obo:BFO_0000027c
obo:OGMS_0000129c

continuant fiat boundaryc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000140
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000141c
Sub-classes obo:BFO_0000142c
obo:BFO_0000146c
obo:BFO_0000147c

immaterial entityc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000141
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000004c
Sub-classes obo:BFO_0000029c
obo:BFO_0000140c
obo:BFO_0000006c

one-dimensional continuant fiat boundaryc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000142
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000140c

process profilec # Classes

URI http://purl.obolibrary.org/obo/BFO_0000144
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000015c

relational qualityc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000145
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000019c

two-dimensional continuant fiat boundaryc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000146
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000140c

zero-dimensional continuant fiat boundaryc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000147
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000140c

zero-dimensional temporal regionc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000148
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000008c

historyc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000182
Is Defined By http://purl.obolibrary.org/obo/bfo.owl
Super-classes obo:BFO_0000015c

data itemc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000027
Super-classes obo:IAO_0000030c
Sub-classes obo:OGMS_0000019c
obo:OGMS_0000093c
obo:IAO_0000102c
obo:OGMS_0000123c

information content entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000030
Super-classes obo:BFO_0000031c
Sub-classes obo:IAO_0000027c
obo:OGMS_0000088c
obo:IAO_0000033c

directive information entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000033
Super-classes obo:IAO_0000030c

curation status specificationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000078
Super-classes obo:IAO_0000102c
Members obo:IAO_0000121
obo:IAO_0000428
obo:IAO_0000120
obo:IAO_0000123
obo:IAO_0000124
obo:IAO_0000002
obo:IAO_0000423
obo:IAO_0000125
obo:IAO_0000122

data about an ontology partc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000102
Super-classes obo:IAO_0000027c
Sub-classes obo:IAO_0000225c
obo:IAO_0000409c
obo:IAO_8000000c
obo:IAO_0000078c

obsolescence reason specificationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000225
Super-classes obo:IAO_0000102c
Members obo:IAO_0000229
obo:IAO_0000228
obo:IAO_0000103
obo:IAO_0000227
obo:IAO_0000226

denotator typec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000409
Super-classes obo:IAO_0000102c
Members obo:IAO_0000420
obo:IAO_0000410
obo:IAO_0000421

ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000000
Super-classes obo:IAO_0000102c
Sub-classes obo:IAO_8000003c
obo:IAO_8000013c
obo:IAO_8000001c
obo:IAO_8000002c
obo:IAO_8000014c
obo:IAO_8000004c
obo:IAO_8000006c

base ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000001
Super-classes obo:IAO_8000000c

editors ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000002
Super-classes obo:IAO_8000000c

main release ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000003
Super-classes obo:IAO_8000000c

bridge ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000004
Super-classes obo:IAO_8000000c
Sub-classes obo:IAO_8000016c

import ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000005
Super-classes obo:IAO_8000006c
Sub-classes obo:IAO_8000011c

subset ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000006
Super-classes obo:IAO_8000000c
Sub-classes obo:IAO_8000010c
obo:IAO_8000008c
obo:IAO_8000009c
obo:IAO_8000007c
obo:IAO_8000012c
obo:IAO_8000005c
obo:IAO_8000017c

curation subset ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000007
Super-classes obo:IAO_8000006c

analysis subset ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000008
Super-classes obo:IAO_8000006c

single layer subset ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000009
Super-classes obo:IAO_8000006c

exclusion subset ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000010
Super-classes obo:IAO_8000006c

external import ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000011
Super-classes obo:IAO_8000005c

species subset ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000012
Super-classes obo:IAO_8000006c

reasoned ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000013
Super-classes obo:IAO_8000000c

generated ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000014
Super-classes obo:IAO_8000000c
Sub-classes obo:IAO_8000015c

template generated ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000015
Super-classes obo:IAO_8000014c

taxonomic bridge ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000016
Super-classes obo:IAO_8000004c

ontology module subsetted by expressivityc # Classes

URI http://purl.obolibrary.org/obo/IAO_8000017
Super-classes obo:IAO_8000006c
Sub-classes obo:IAO_8000019c
obo:IAO_8000018c

obo basic subset ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000018
Super-classes obo:IAO_8000017c

ontology module subsetted by OWL profilec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000019
Super-classes obo:IAO_8000017c
Sub-classes obo:IAO_8000020c

EL++ ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000020
Super-classes obo:IAO_8000019c

infectious disorderc # Classes

URI http://purl.obolibrary.org/obo/IDO_0000504
Super-classes obo:OGMS_0000045c

infectionc # Classes

URI http://purl.obolibrary.org/obo/IDO_0000586
Super-classes obo:BFO_0000040c
Sub-classes obo:IDO_0000630c

hospital-acquired infectionc # Classes

URI http://purl.obolibrary.org/obo/IDO_0000630
Super-classes obo:IDO_0000586c

planned processc # Classes

URI http://purl.obolibrary.org/obo/OBI_0000011
Super-classes obo:BFO_0000015c
Sub-classes obo:OGMS_0000107c
obo:OGMS_0000096c
obo:OGMS_0000103c

disease stagec # Classes

URI http://purl.obolibrary.org/obo/OBI_0000278
Super-classes obo:BFO_0000015c
Sub-classes obo:OGMS_0000106c
obo:OGMS_0000118c
obo:OGMS_0000105c
obo:OGMS_0000117c
obo:OGMS_0000133c

clinical findingc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000014
Super-classes obo:OGMS_0000123c
Sub-classes obo:OGMS_0000017c
obo:OGMS_0000018c
obo:OGMS_0000083c

clinical historyc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000015
Super-classes obo:OGMS_0000123c

clinical picturec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000016
Super-classes obo:OGMS_0000123c

image findingc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000017
Super-classes obo:OGMS_0000014c

laboratory findingc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000018
Super-classes obo:OGMS_0000014c

preclinical findingc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000019
Super-classes obo:IAO_0000027c

symptomc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000020
Super-classes obo:BFO_0000015c
Sub-classes obo:OGMS_0000085c

manifestation of a diseasec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000022
Super-classes obo:BFO_0000019c
Sub-classes obo:OGMS_0000026c
obo:OGMS_0000025c

phenotypec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000023
Super-classes obo:BFO_0000019c
Sub-classes obo:OGMS_0000027c
obo:OGMS_0000028c

obsolete_signc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000024
Description

The class sign has been replaced by three seperate classes which reflect the different types of signs possible.
Super-classes owl:Thingc

clinical manifestation of a diseasec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000025
Super-classes obo:OGMS_0000022c

preclinical manifestation of a diseasec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000026
Super-classes obo:OGMS_0000022c

clinical phenotypec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000027
Super-classes obo:OGMS_0000023c

disease phenotypec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000028
Super-classes obo:OGMS_0000023c

vital signc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000029
Super-classes obo:OGMS_0000129c

predisposition to disease of type Xc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000030
Super-classes obo:BFO_0000016c
Sub-classes obo:OGMS_0000033c

diseasec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000031
Super-classes obo:BFO_0000016c
Sub-classes obo:OGMS_0000035c
obo:OGMS_0000034c

homeostasisc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000032
Super-classes obo:BFO_0000016c
Sub-classes obo:OGMS_0000038c
obo:OGMS_0000037c

genetic predisposition to disease of type Xc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000033
Super-classes obo:OGMS_0000030c

acquired genetic diseasec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000034
Super-classes obo:OGMS_0000031c

constitutional genetic diseasec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000035
Super-classes obo:OGMS_0000031c

abnormal homeostasisc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000037
Super-classes obo:OGMS_0000032c

normal homeostasisc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000038
Super-classes obo:OGMS_0000032c

configurationc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000039
Super-classes obo:BFO_0000019c
Sub-classes obo:OGMS_0000040c

pathological physical configurationc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000040
Super-classes obo:OGMS_0000039c

disorderc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000045
Super-classes obo:BFO_0000040c
Sub-classes obo:IDO_0000504c
obo:OGMS_0000102c
obo:OGMS_0000047c
obo:OGMS_0000046c
obo:OGMS_0000146c

epigenetic disorderc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000046
Super-classes obo:OGMS_0000045c

genetic disorderc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000047
Super-classes obo:OGMS_0000045c
Sub-classes obo:OGMS_0000051c
obo:OGMS_0000050c

acquired genetic disorderc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000050
Super-classes obo:OGMS_0000047c

constitutional genetic disorderc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000051
Super-classes obo:OGMS_0000047c

clinical history takingc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000055
Super-classes obo:OGMS_0000108c

clinical laboratory testc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000056
Super-classes obo:OGMS_0000108c

physical examinationc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000057
Super-classes obo:OGMS_0000108c

etiological processc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000059
Super-classes obo:BFO_0000015c

bodily processc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000060
Super-classes obo:BFO_0000015c
Sub-classes obo:OGMS_0000061c
obo:OGMS_0000095c

pathological bodily processc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000061
Super-classes obo:OGMS_0000060c
Sub-classes obo:OGMS_0000140c
obo:OGMS_0000131c
obo:OGMS_0000082c
obo:OGMS_0000080c
obo:OGMS_0000128c
obo:OGMS_0000130c
obo:OGMS_0000132c
obo:OGMS_0000081c

disease coursec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000063
Super-classes obo:BFO_0000015c
Sub-classes obo:OGMS_0000094c
obo:OGMS_0000066c
obo:OGMS_0000065c
obo:OGMS_0000064c

chronic disease coursec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000064
Super-classes obo:OGMS_0000063c

progressive disease coursec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000065
Super-classes obo:OGMS_0000063c

transient disease coursec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000066
Super-classes obo:OGMS_0000063c

_undefined primitive termc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000067
Super-classes obo:BFO_0000001c
Sub-classes obo:OGMS_0000071c
obo:OGMS_0000070c
obo:OGMS_0000069c

clinically abnormalc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000069
Super-classes obo:OGMS_0000067c

physical basisc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000070
Super-classes obo:OGMS_0000067c

realizationc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000071
Super-classes obo:OGMS_0000067c

diagnosisc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000073
Super-classes obo:OGMS_0000123c

normal valuec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000074
Super-classes obo:BFO_0000031c

pathological formationc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000077
Super-classes obo:BFO_0000040c

pathological anatomical structurec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000078
Super-classes obo:BFO_0000040c

portion of pathological body substancec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000079
Super-classes obo:BFO_0000040c

pathological transformationc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000080
Super-classes obo:OGMS_0000061c

pathological derivationc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000081
Super-classes obo:OGMS_0000061c

pathological invasionc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000082
Super-classes obo:OGMS_0000061c

physical examination findingc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000083
Super-classes obo:OGMS_0000014c

organism populationc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000084
Super-classes obo:BFO_0000040c

painc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000085
Super-classes obo:OGMS_0000020c

syndromec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000086
Super-classes obo:BFO_0000019c

extended organismc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000087
Super-classes obo:BFO_0000040c

patient symptom reportc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000088
Super-classes obo:IAO_0000030c

congenital disorderc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000089
Super-classes obo:BFO_0000040c
Sub-classes obo:OGMS_0000127c
obo:OGMS_0000126c

treatmentc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000090
Super-classes obo:OGMS_0000096c
Sub-classes obo:OGMS_0000112c
obo:OGMS_0000111c

convalescencec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000091
Super-classes obo:BFO_0000015c

life coursec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000092
Super-classes obo:BFO_0000015c

prognosisc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000093
Super-classes obo:IAO_0000027c

acute disease coursec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000094
Super-classes obo:OGMS_0000063c

inflammatory processc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000095
Super-classes obo:OGMS_0000060c

health care processc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000096
Super-classes obo:OBI_0000011c
Sub-classes obo:OGMS_0000098c
obo:OGMS_0000110c
obo:OGMS_0000109c
obo:OGMS_0000097c
obo:OGMS_0000108c
obo:OGMS_0000104c
obo:OGMS_0000090c

health care encounterc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000097
Super-classes obo:OGMS_0000096c
Sub-classes obo:OGMS_0000100c
obo:OGMS_0000101c
obo:OGMS_0000099c

hospitalizationc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000098
Description

09/16/2020 Is this same as admission? Is this the same as inpatient encounter?
Super-classes obo:OGMS_0000096c

outpatient encounterc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000099
Super-classes obo:OGMS_0000097c
Sub-classes obo:OGMS_0000125c
obo:OGMS_0000124c

inpatient encounterc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000100
Super-classes obo:OGMS_0000097c

emergency department encounterc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000101
Super-classes obo:OGMS_0000097c

injuryc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000102
Super-classes obo:OGMS_0000045c

disease prophylaxisc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000103
Super-classes obo:OBI_0000011c

diagnostic processc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000104
Super-classes obo:OGMS_0000096c

relapsec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000105
Super-classes obo:OBI_0000278c

remissionc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000106
Super-classes obo:OBI_0000278c
Sub-classes obo:OGMS_0000121c
obo:OGMS_0000120c

ancillary health care processc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000107
Super-classes obo:OBI_0000011c

health care process assayc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000108
Super-classes obo:OGMS_0000096c
Sub-classes obo:OGMS_0000057c
obo:OGMS_0000055c
obo:OGMS_0000056c

health care process biomaterial transformationc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000109
Super-classes obo:OGMS_0000096c

health care process data transformationc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000110
Super-classes obo:OGMS_0000096c

prophylactic treatmentc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000111
Super-classes obo:OGMS_0000090c

therapeutic procedurec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000112
Super-classes obo:OGMS_0000090c
Sub-classes obo:OGMS_0000114c
obo:OGMS_0000115c
obo:OGMS_0000116c
obo:OGMS_0000113c
obo:OGMS_0000143c

chemotherapy procedurec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000113
Super-classes obo:OGMS_0000112c

immunotherapy procedurec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000114
Super-classes obo:OGMS_0000112c

physical therapy procedurec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000115
Super-classes obo:OGMS_0000112c

radiation therapy procedurec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000116
Super-classes obo:OGMS_0000112c

asymptomaticc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000117
Super-classes obo:OBI_0000278c

onsetc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000118
Super-classes obo:OBI_0000278c
Sub-classes obo:OGMS_0000119c

acute onsetc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000119
Super-classes obo:OGMS_0000118c

complete remissionc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000120
Super-classes obo:OGMS_0000106c

partial remissionc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000121
Super-classes obo:OGMS_0000106c

recovered from diseasec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000122
Super-classes obo:BFO_0000019c

clinical data itemc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000123
Super-classes obo:IAO_0000027c
Sub-classes obo:OGMS_0000073c
obo:OGMS_0000016c
obo:OGMS_0000015c
obo:OGMS_0000014c

routine health care encounterc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000124
Super-classes obo:OGMS_0000099c

follow-up health care encounterc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000125
Super-classes obo:OGMS_0000099c

congenital infectionc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000126
Super-classes obo:OGMS_0000089c

drug induced congenital malformationc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000127
Super-classes obo:OGMS_0000089c

congenital processc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000128
Super-classes obo:OGMS_0000061c

physical signc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000129
Super-classes obo:BFO_0000040c
Sub-classes obo:OGMS_0000029c

allergic disease processc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000130
Super-classes obo:OGMS_0000061c

cancer processc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000131
Super-classes obo:OGMS_0000061c

autoimmune disease processc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000132
Super-classes obo:OGMS_0000061c

progression stagec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000133
Super-classes obo:OBI_0000278c
Sub-classes obo:OGMS_0000134c

cancer progression stagec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000134
Super-classes obo:OGMS_0000133c
Sub-classes obo:OGMS_0000136c
obo:OGMS_0000138c
obo:OGMS_0000137c
obo:OGMS_0000139c
obo:OGMS_0000135c

cancer progression stage 0c # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000135
Super-classes obo:OGMS_0000134c

cancer progression stage Ic # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000136
Super-classes obo:OGMS_0000134c

cancer progression stage IIc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000137
Super-classes obo:OGMS_0000134c

cancer progression stage IIIc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000138
Super-classes obo:OGMS_0000134c

cancer progression stage IVc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000139
Super-classes obo:OGMS_0000134c

infectious disease processc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000140
Super-classes obo:OGMS_0000061c

processual signc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000141
Super-classes obo:BFO_0000015c

qualitative signc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000142
Super-classes obo:BFO_0000019c

transplantationc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000143
Super-classes obo:OGMS_0000112c
Sub-classes obo:OGMS_0000145c
obo:OGMS_0000144c

solid organ transplantc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000144
Super-classes obo:OGMS_0000143c

transfusionc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000145
Super-classes obo:OGMS_0000143c

tissue disorderc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000146
Super-classes obo:OGMS_0000045c
Sub-classes obo:OGMS_0000147c

neoplasmc # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000147
Super-classes obo:OGMS_0000146c

medication rolec # Classes

URI http://purl.obolibrary.org/obo/OGMS_0000148
Super-classes obo:BFO_0000023c

Annotation Properties ↑

defaultLanguageap # APs

URI http://protege.stanford.edu/plugins/owl/protege#defaultLanguage

BFO OWL specification labelap # APs

URI http://purl.obolibrary.org/obo/BFO_0000179
Super-properties rdfs:label

BFO CLIF specification labelap # APs

URI http://purl.obolibrary.org/obo/BFO_0000180
Super-properties rdfs:label

editor preferred termap # APs

URI http://purl.obolibrary.org/obo/IAO_0000111
Is Defined By http://purl.obolibrary.org/obo/iao.owl

example of usageap # APs

URI http://purl.obolibrary.org/obo/IAO_0000112
Is Defined By http://purl.obolibrary.org/obo/iao.owl

in branchap # APs

URI http://purl.obolibrary.org/obo/IAO_0000113

has curation statusap # APs

URI http://purl.obolibrary.org/obo/IAO_0000114

definitionap # APs

URI http://purl.obolibrary.org/obo/IAO_0000115
Is Defined By http://purl.obolibrary.org/obo/iao.owl

editor noteap # APs

URI http://purl.obolibrary.org/obo/IAO_0000116
Is Defined By http://purl.obolibrary.org/obo/iao.owl

term editorap # APs

URI http://purl.obolibrary.org/obo/IAO_0000117
Is Defined By http://purl.obolibrary.org/obo/iao.owl

alternative termap # APs

URI http://purl.obolibrary.org/obo/IAO_0000118
Is Defined By http://purl.obolibrary.org/obo/iao.owl

definition sourceap # APs

URI http://purl.obolibrary.org/obo/IAO_0000119
Is Defined By http://purl.obolibrary.org/obo/iao.owl

has obsolescence reasonap # APs

URI http://purl.obolibrary.org/obo/IAO_0000231

curator noteap # APs

URI http://purl.obolibrary.org/obo/IAO_0000232
Is Defined By http://purl.obolibrary.org/obo/iao.owl

term tracker itemap # APs

URI http://purl.obolibrary.org/obo/IAO_0000233
Description

The 'tracker item' can associate a tracker with a specific ontology term.

ontology term requesterap # APs

URI http://purl.obolibrary.org/obo/IAO_0000234
Description

The 'term requester' can credit the person, organization or project who request the ontology term.

is denotator typeap # APs

URI http://purl.obolibrary.org/obo/IAO_0000411

imported fromap # APs

URI http://purl.obolibrary.org/obo/IAO_0000412
Is Defined By http://purl.obolibrary.org/obo/iao.owl

expand expression toap # APs

URI http://purl.obolibrary.org/obo/IAO_0000424

expand assertion toap # APs

URI http://purl.obolibrary.org/obo/IAO_0000425

first order logic expressionap # APs

URI http://purl.obolibrary.org/obo/IAO_0000426

antisymmetric propertyap # APs

URI http://purl.obolibrary.org/obo/IAO_0000427

OBO foundry unique labelap # APs

URI http://purl.obolibrary.org/obo/IAO_0000589

has ID digit countap # APs

URI http://purl.obolibrary.org/obo/IAO_0000596

has ID range allocated toap # APs

URI http://purl.obolibrary.org/obo/IAO_0000597

has ID policy forap # APs

URI http://purl.obolibrary.org/obo/IAO_0000598

has ID prefixap # APs

URI http://purl.obolibrary.org/obo/IAO_0000599

elucidationap # APs

URI http://purl.obolibrary.org/obo/IAO_0000600
Is Defined By http://purl.obolibrary.org/obo/iao.owl

has associated axiom(nl)ap # APs

URI http://purl.obolibrary.org/obo/IAO_0000601
Is Defined By http://purl.obolibrary.org/obo/iao.owl

has associated axiom(fol)ap # APs

URI http://purl.obolibrary.org/obo/IAO_0000602
Is Defined By http://purl.obolibrary.org/obo/iao.owl

is allocated id rangeap # APs

URI http://purl.obolibrary.org/obo/IAO_0000603
Description

Add as annotation triples in the granting ontology

has ontology root termap # APs

URI http://purl.obolibrary.org/obo/IAO_0000700

may be identical toap # APs

URI http://purl.obolibrary.org/obo/IAO_0006011
Description

Edges asserting this should be annotated with to record evidence supporting the assertion and its provenance.

scheduled for obsoletion on or afterap # APs

URI http://purl.obolibrary.org/obo/IAO_0006012
Range(s) xsd:dateTimec

has axiom labelap # APs

URI http://purl.obolibrary.org/obo/IAO_0010000
Is Defined By http://purl.obolibrary.org/obo/iao.owl

term replaced byap # APs

URI http://purl.obolibrary.org/obo/IAO_0100001
Description

Add as annotation triples in the granting ontology

contributorap # APs

URI http://purl.org/dc/elements/1.1/contributor

coverageap # APs

URI http://purl.org/dc/elements/1.1/coverage

creatorap # APs

URI http://purl.org/dc/elements/1.1/creator

dateap # APs

URI http://purl.org/dc/elements/1.1/date

descriptionap # APs

URI http://purl.org/dc/elements/1.1/description

formatap # APs

URI http://purl.org/dc/elements/1.1/format

identifierap # APs

URI http://purl.org/dc/elements/1.1/identifier

languageap # APs

URI http://purl.org/dc/elements/1.1/language

memberap # APs

URI http://purl.org/dc/elements/1.1/member

publisherap # APs

URI http://purl.org/dc/elements/1.1/publisher

relationap # APs

URI http://purl.org/dc/elements/1.1/relation

rightsap # APs

URI http://purl.org/dc/elements/1.1/rights

sourceap # APs

URI http://purl.org/dc/elements/1.1/source

subjectap # APs

URI http://purl.org/dc/elements/1.1/subject

titleap # APs

URI http://purl.org/dc/elements/1.1/title

typeap # APs

URI http://purl.org/dc/elements/1.1/type

licenseap # APs

URI http://purl.org/dc/terms/license

created_byap # APs

URI http://www.geneontology.org/formats/oboInOwl#created_by

creation_dateap # APs

URI http://www.geneontology.org/formats/oboInOwl#creation_date

isDefinedByap # APs

URI http://www.w3.org/2000/01/rdf-schema#isDefinedBy

seeAlsoap # APs

URI http://www.w3.org/2000/01/rdf-schema#seeAlso

homepageap # APs

URI http://xmlns.com/foaf/0.1/homepage

mboxap # APs

URI http://xmlns.com/foaf/0.1/mbox

Named Individuals ↑

example to be eventually removedni

Class(es)
obo:IAO_0000078
URI http://purl.obolibrary.org/obo/IAO_0000002

failed exploratory termni

Class(es)
obo:IAO_0000225
URI http://purl.obolibrary.org/obo/IAO_0000103

metadata completeni

Class(es)
obo:IAO_0000078
URI http://purl.obolibrary.org/obo/IAO_0000120

organizational termni

Class(es)
obo:IAO_0000078
URI http://purl.obolibrary.org/obo/IAO_0000121

ready for releaseni

Class(es)
obo:IAO_0000078
URI http://purl.obolibrary.org/obo/IAO_0000122

metadata incompleteni

Class(es)
obo:IAO_0000078
URI http://purl.obolibrary.org/obo/IAO_0000123

uncuratedni

Class(es)
obo:IAO_0000078
URI http://purl.obolibrary.org/obo/IAO_0000124

pending final vettingni

Class(es)
obo:IAO_0000078
URI http://purl.obolibrary.org/obo/IAO_0000125

obsolete_coreni

URI http://purl.obolibrary.org/obo/IAO_0000224

placeholder removedni

Class(es)
obo:IAO_0000225
URI http://purl.obolibrary.org/obo/IAO_0000226

terms mergedni

Class(es)
obo:IAO_0000225
URI http://purl.obolibrary.org/obo/IAO_0000227

term importedni

Class(es)
obo:IAO_0000225
URI http://purl.obolibrary.org/obo/IAO_0000228

term splitni

Class(es)
obo:IAO_0000225
URI http://purl.obolibrary.org/obo/IAO_0000229

universalni

Class(es)
obo:IAO_0000409
URI http://purl.obolibrary.org/obo/IAO_0000410

defined classni

Class(es)
obo:IAO_0000409
URI http://purl.obolibrary.org/obo/IAO_0000420

named class expressionni

Class(es)
obo:IAO_0000409
URI http://purl.obolibrary.org/obo/IAO_0000421

to be replaced with external ontology termni

Class(es)
obo:IAO_0000078
URI http://purl.obolibrary.org/obo/IAO_0000423

requires discussionni

Class(es)
obo:IAO_0000078
URI http://purl.obolibrary.org/obo/IAO_0000428

Namespaces ↑

default (:)
http://purl.obolibrary.org/obo/ogms.owl
dc
http://purl.org/dc/elements/1.1/
foaf
http://xmlns.com/foaf/0.1/
obo
http://purl.obolibrary.org/obo/
oboInOwl
http://www.geneontology.org/formats/oboInOwl#
owl
http://www.w3.org/2002/07/owl#
protege
http://protege.stanford.edu/plugins/owl/protege#
prov
http://www.w3.org/ns/prov#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
sdo
http://schema.org/
skos
http://www.w3.org/2004/02/skos/core#
terms
http://purl.org/dc/terms/
xsd
http://www.w3.org/2001/XMLSchema#

Legend

cClasses
opObject Properties
fpFunctional Properties
dpData Properties
dpAnnotation Properties
pProperties
niNamed Individuals