OHMI: Ontology of Host-Microbiome Interactions

Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this.

has super-classes: process^c
has sub-classes: gene expression^c, host microbiome restoration^c, multi-organism process^c, pathologic process^c

biome^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00000428

There has been some concern raised (see Issue #143) about the usefulness of the assertion that organisms have evolved within a given biome. They may have evolved adaptations elsewhere and demonstrating one or the other is often not feasible. Consider relabelling to "environmental system determined by an ecological community" or similar.

has super-classes: ecosystem^c
has sub-classes: microbiome^c

Blautia^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_572511

has super-classes: Lachnospiraceae^c
has sub-classes: Blautia coccoides^c, Blautia obeum^c

Blautia coccoides^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1532

has super-classes: Blautia^c; microbe susceptibly depleted (compared to fibromyalgia patients) in gut of human with disease^op some rheumatoid arthritis^c

Blautia obeum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_40520

has super-classes: Blautia^c

blood immunoglobulin measurement^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CMO_0001531

has super-classes: clinical measurement^c
has sub-classes: serum immunoglobulin measurement^c

bone inflammation disease^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_3342

has super-classes: connective tissue disease^c
has sub-classes: ankylosing spondylitis^c, arthritis^c

Burkholderia^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32008

has super-classes: Burkholderiaceae^c; microbe susceptibly depleted in respiratory airway of human with disease^op some rheumatoid arthritis^c

Burkholderiaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_119060

has super-classes: Burkholderiales^c
has sub-classes: Burkholderia^c

Burkholderiales^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_80840

has super-classes: Betaproteobacteria^c
has sub-classes: Acidovorax^c, Burkholderiaceae^c, Sutterella wadsworthensis^c

Caenorhabditis elegans^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6239

has super-classes: Ecdysozoa^c

Campylobacter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_194

has super-classes: Campylobacteraceae^c
has sub-classes: Campylobacter jejuni^c

Campylobacter jejuni^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_197

has super-classes: Campylobacter^c

Campylobacteraceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_72294

has super-classes: Campylobacterales^c
has sub-classes: Campylobacter^c

Campylobacterales^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_213849

has super-classes: Epsilonproteobacteria^c
has sub-classes: Campylobacteraceae^c, Helicobacter^c

cancer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_162

Updating out dated UMLS CUI.

has super-classes: disease^c
has sub-classes: carcinoma^c, organ system cancer^c

Candida <Debaryomycetaceae>^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1535326

has super-classes: Saccharomycetales^c
has sub-classes: Candida albicans^c

Candida albicans^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5476

has super-classes: Candida <Debaryomycetaceae>^c

Candidatus Portiera^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_235572

has super-classes: Gammaproteobacteria^c

Capnocytophaga^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1016

has super-classes: Bacteroidetes^c
has sub-classes: Capnocytophaga gingivalis^c

Capnocytophaga gingivalis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1017

has super-classes: Capnocytophaga^c

carcinoma^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_305

has super-classes: cancer^c
has sub-classes: liver carcinoma^c, stomach carcinoma^c

Cardiobacterium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2717

has super-classes: Gammaproteobacteria^c; microbe susceptibly depleted in oral cavity of human with disease^op some rheumatoid arthritis^c

Catenisphaera adipataccumulans^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_700500

has super-classes: Erysipelotrichaceae^c

cell^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000000

has super-classes: material entity^c
has sub-classes: experimentally modified cell in vitro^c

cell freezing medium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001912

has super-classes: processed material^c

Chlamydia^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_810

has super-classes: PVC group^c
has sub-classes: Chlamydia trachomatis^c

Chlamydia trachomatis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_813

has super-classes: Chlamydia^c

Chloroflexi^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_200795

has super-classes: Terrabacteria group^c
has sub-classes: Anaerolineae^c

Chronic diarrhea^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HP_0002028

has super-classes: Diarrhea^c

chronic obstructive pulmonary disease^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_3083

has super-classes: disease of anatomical entity^c

Citrobacter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_544

has super-classes: Enterobacteriaceae^c
has sub-classes: Citrobacter farmeri^c, Citrobacter rodentium^c

Citrobacter farmeri^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_67824

has super-classes: Citrobacter^c

Citrobacter rodentium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_67825

has super-classes: Citrobacter^c

clinical measurement^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CMO_0000000

has super-classes: measurement datum^c
has sub-classes: blood immunoglobulin measurement^c

Clostridia^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186801

has super-classes: Firmicutes^c; microbe susceptibly expanded in gut of human with disease^op some rheumatoid arthritis^c
has sub-classes: Clostridiales^c

Clostridiaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_31979

has super-classes: Clostridiales^c
has sub-classes: Clostridium^c

Clostridiales^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186802

has super-classes: Clostridia^c
has sub-classes: Clostridiaceae^c, Clostridiales incertae sedis^c, Eubacteriaceae^c, Lachnospiraceae^c, Oscillibacter^c, Peptostreptococcaceae^c, Ruminococcaceae^c, unclassified Clostridiales^c

Clostridiales Family XIII. Incertae Sedis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_543314

has super-classes: Clostridiales incertae sedis^c
has sub-classes: Anaerovorax^c, Mogibacterium^c

Clostridiales incertae sedis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_538999

has super-classes: Clostridiales^c
has sub-classes: Acidaminobacter^c, Clostridiales Family XIII. Incertae Sedis^c

Clostridioides difficile^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1496

has super-classes: Peptostreptococcaceae^c

Clostridioides difficile infection^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000028

has super-classes: infection process^c

Clostridium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1485

has super-classes: Clostridiaceae^c
has sub-classes: Clostridium perfringens^c, Clostridium sp. cp01.19^c

Clostridium perfringens^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1502

has super-classes: Clostridium^c; microbe susceptibly expanded in gut of human with disease^op some rheumatoid arthritis^c

Clostridium sp. cp01.19^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_305911

has super-classes: Clostridium^c

collecting specimen from organism^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600005

has super-classes: specimen collection process^c; achieves_planned_objective^op some specimen collection objective^c; has_specified_output^op some specimen^c; has_specified_input^op some organism^c

collection of organisms^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000000

May be of the same or different species.

has super-classes: material entity^c
has sub-classes: microbiota^c

Collinsella^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_102106

has super-classes: Coriobacteriaceae^c
has sub-classes: Collinsella aerofaciens^c

Collinsella aerofaciens^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_74426

has super-classes: Collinsella^c; microbe susceptibly expanded in gut of human with disease^op some rheumatoid arthritis^c

colon cancer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_219

has super-classes: large intestine cancer^c

colon cancer human-gut microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000024

has super-classes: human-gut microbiome interaction^c; has participant^op some Homo sapiens^c and (has disease^op some colon cancer^c)

colorectal cancer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_9256

Xref MGI. OMIM mapping confirmed by DO. [SN].

has super-classes: large intestine cancer^c

colorectal cancer human-gut microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000054

has super-classes: human-gut microbiome interaction^c; has participant^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)
has sub-classes: depletion of Bacteroidetes in colorectal cancer human gut^c, depletion of Bifidobacterium in colorectal cancer human gut^c, depletion of Citrobacter in colorectal cancer human gut^c, depletion of Cronobacter in colorectal cancer human gut^c, depletion of Firmicutes in colorectal cancer human gut^c, depletion of Kluyvera in colorectal cancer human gut^c, depletion of Microbacterium in colorectal cancer human gut^c, depletion of Salmonella enterica subsp. enterica in colorectal cancer human gut^c, depletion of Serratia in colorectal cancer human gut^c, depletion of Shigella in colorectal cancer human gut^c, expansion of A. muciniphila in colorectal cancer human gut^c, expansion of Anoxybacillus in colorectal cancer human gut^c, expansion of Bacteroidetes in colorectal cancer human gut^c, expansion of Basidiomycota in colorectal cancer human gut^c, expansion of Chlamydia in colorectal cancer human gut^c, expansion of Clostridia in colorectal cancer human gut^c, expansion of Coriobacteriaceae in colorectal cancer human gut^c, expansion of D. paucivorans in colorectal cancer human gut^c, expansion of Enterococcaceae in colorectal cancer human gut^c, expansion of Erysipelotrichaceae in colorectal cancer human gut^c, expansion of Fusobacteria in colorectal cancer human gut^c, expansion of Microbacterium in colorectal cancer human gut^c, expansion of Mycobacterium in colorectal cancer human gut^c, expansion of Parvimonas in colorectal cancer human gut^c, expansion of Phascolarctobacterium in colorectal cancer human gut^c, expansion of Proteobacteria in colorectal cancer human gut^c, expansion of Selenomonas in colorectal cancer human gut^c, expansion of Slackia in colorectal cancer human gut^c, expansion of Streptococcaceae in colorectal cancer human gut^c, expansion of Veillonellaceae in colorectal cancer human gut^c

community species diversity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000019

The Shannon Index and Simpson Index are examples of ways in which species diversity is quantified.

has super-classes: quality of an ecological community^c
has sub-classes: alpha diversity^c, beta diversity^c, gamma diversity^c, microbial species diversity^c

community species evenness^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000023

has super-classes: quality of an ecological community^c

community species richness^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000010

has super-classes: quality of an ecological community^c

connective tissue disease^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_65

has super-classes: musculoskeletal system disease^c
has sub-classes: bone inflammation disease^c, rheumatic disease^c

continuant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000002

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: entity^c; in similarity relationship with^op only continuant^c; has prototype^op only continuant^c
has sub-classes: generically dependent continuant^c, independent continuant^c, specifically dependent continuant^c
is in domain of: participates in^op
is in range of: has participant^op

Coprobacillus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_100883

has super-classes: Erysipelotrichaceae^c

Coprococcus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33042

has super-classes: Lachnospiraceae^c
has sub-classes: Coprococcus catus^c

Coprococcus catus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_116085

has super-classes: Coprococcus^c

Coriobacteriaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_84107

has super-classes: Coriobacteriales^c
has sub-classes: Collinsella^c

Coriobacteriales^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_84999

has super-classes: Coriobacteriia^c
has sub-classes: Atopobium^c, Coriobacteriaceae^c

Coriobacteriia^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_84998

has super-classes: Actinobacteria <phylum>^c
has sub-classes: Coriobacteriales^c, Eggerthellaceae^c

Corynebacteriales^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_85007

has super-classes: Actinobacteria <class>^c
has sub-classes: Corynebacterium diphtheriae^c, Mycobacterium^c, Nocardiaceae^c

Corynebacterium diphtheriae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1717

has super-classes: Corynebacteriales^c

Crenothrix^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_200670

has super-classes: Gammaproteobacteria^c

Cronobacter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_413496

has super-classes: Enterobacteriaceae^c

Cryptobacterium curtum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_84163

has super-classes: Eggerthellaceae^c; microbe susceptibly depleted in oral cavity of human with disease^op some rheumatoid arthritis^c

culture medium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000079

has super-classes: processed material^c

cultured cell^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000010

has super-classes: experimentally modified cell in vitro^c; (is_specified_output_of^op some establishing cell culture^c) or (derives from^op some is_specified_output_of^op some establishing cell culture^c)

cultured cell population^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100060

The extent of a 'cultured cell population' is restricted only in that all cell members must share a propagation history (ie be derived through a common lineage of passages from an initial culture). In being defined in this way, this class can be used to refer to the populations that researchers actually use in the practice of science - ie are the inputs to culturing, experimentation, and sharing. The cells in such populations will be a relatively uniform population as they have experienced similar selective pressures due to their continuous co-propagation. And this population will also have a single passage number, again owing to their common passaging history. Cultured cell populations represent only a collection of cells (ie do not include media, culture dishes, etc), and include populations of cultured unicellular organisms or cultured multicellular organism cells. They can exist under active culture, stored in a quiescent state for future use, or applied experimentally.

has super-classes: processed material^c; is_specified_output_of^op some maintaining cell culture^c; has grain^op some cultured cell^c; has grain^op only cultured cell^c

curation status specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000078

is equivalent to: { ready for release , example to be eventually removed , metadata incomplete , uncurated , pending final vetting , metadata complete , organizational term , requires discussion , to be replaced with external ontology term }
has super-classes: data about an ontology part^c
has members: example to be eventually removedⁿⁱ, requires discussionⁿⁱ, to be replaced with external ontology termⁿⁱ

Cutibacterium acnes 17B^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1182749

has super-classes: Propionibacteriaceae^c

Danio rerio^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7955

has super-classes: Euteleostomi^c

Daphnia^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6668

has super-classes: Pancrustacea^c

data about an ontology part^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000102

has super-classes: data item^c
has sub-classes: curation status specification^c

data item^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000027

has super-classes: information content entity^c
has sub-classes: data about an ontology part^c, measurement datum^c

datum label^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000009

has super-classes: information content entity^c
has sub-classes: measurement unit label^c

decreased organism quantity compared with fibromyalgia patients^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000052

has super-classes: quality^c

decreased organism quantity compared with healthy controls^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000035

has super-classes: quality^c

decreased organism quantity in acute disease patient compared with chronic disease control^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000046

has super-classes: quality^c

delta/epsilon subdivisions^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_68525

has super-classes: Proteobacteria^c
has sub-classes: Desulfovibrionaceae^c, Epsilonproteobacteria^c

deoxyribonucleic acid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_16991

has super-classes: nucleic acid^c

depletion of [Clostridium] clostridioforme in ERA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000271

is equivalent to: has participant^op some [Clostridium] clostridioforme^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some enthesitis-related juvenile idiopathic arthritis^c)))
has super-classes: depletion of Lachnospiraceae in ERA human gut^c; has microbe depleted in diseased host^op some [Clostridium] clostridioforme^c; occurs in^op some lower digestive tract^c

depletion of Actinobacteria <phylum> in PsA human skin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000161

https://www.ncbi.nlm.nih.gov/pubmed/?term=3750937

is equivalent to: has participant^op some Actinobacteria <phylum>^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some zone of skin^c and (part of^op some Homo sapiens^c and (has disease^op some psoriatic arthritis^c)))
has super-classes: PsA human zone of skin microbiome interaction^c; occurs in^op some zone of skin^c; has microbe depleted in diseased host^op some Actinobacteria <phylum>^c
has sub-classes: depletion of Propionibacterium acnes 17B in PsA human skin^c, depletion of Propionibacterium in PsA human skin^c

depletion of Actynomyces in RA human respiratory airway^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000217

is equivalent to: has participant^op some Actinomyces^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some respiratory airway^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human respiratory airway microbiome interaction^c; occurs in^op some respiratory airway^c; has microbe depleted in diseased host^op some Actinomyces^c

depletion of Aggregatibacter in RA human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000173

is equivalent to: has participant^op some Aggregatibacter^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human oral cavity microbiome interaction^c; occurs in^op some oral cavity^c; has microbe depleted in diseased host^op some Aggregatibacter^c

depletion of Akkermansia in PsA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000153

is equivalent to: has participant^op some Akkermansia^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some psoriatic arthritis^c)))
has super-classes: depletion of Verrucomicrobia in PsA human gut^c; has microbe depleted in diseased host^op some Akkermansia^c; occurs in^op some lower digestive tract^c

depletion of Alistipes in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000150

is equivalent to: has participant^op some Alistipes^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: gout human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Alistipes^c; occurs in^op some lower digestive tract^c

depletion of Anaerovorax in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000312

is equivalent to: has participant^op some Anaerovorax^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Clostridiales in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Anaerovorax^c

depletion of Anoxybacillus in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000332

https://www.ncbi.nlm.nih.gov/pubmed/23497613

is equivalent to: has participant^op some Anoxybacillus^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Firmicutes in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Anoxybacillus^c

depletion of B. animalis in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000390

https://www.ncbi.nlm.nih.gov/pubmed/25758642

is equivalent to: has participant^op some Bifidobacterium animalis^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Bifidobacterium in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Bifidobacterium animalis^c
has sub-classes: depletion of B. animalis subsp. lactis in colorectal cancer human gut^c

depletion of B. animalis subsp. lactis in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000403

https://www.ncbi.nlm.nih.gov/pubmed/22009989

is equivalent to: has participant^op some Bifidobacterium animalis subsp. lactis^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of B. animalis in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Bifidobacterium animalis subsp. lactis^c

depletion of B. finegoldii in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000315

https://www.ncbi.nlm.nih.gov/pubmed/23940645

is equivalent to: has participant^op some Bacteroides finegoldii^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: 'depletion of Bacteroides in colorectal cancer human gut'^c; has microbe depleted in diseased host^op some Bacteroides finegoldii^c

depletion of B. longum in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000380

https://www.ncbi.nlm.nih.gov/pubmed/25439270

is equivalent to: has participant^op some Bifidobacterium longum^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Bifidobacterium in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Bifidobacterium longum^c

depletion of B. uniformis in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000362

https://www.ncbi.nlm.nih.gov/pubmed/26170900

is equivalent to: has participant^op some Bacteroides uniformis^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: 'depletion of Bacteroides in colorectal cancer human gut'^c; has microbe depleted in diseased host^op some Bacteroides uniformis^c

depletion of B.intestinalis in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000316

https://www.ncbi.nlm.nih.gov/pubmed/23940645

is equivalent to: has participant^op some Bacteroides intestinalis^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: 'depletion of Bacteroides in colorectal cancer human gut'^c; has microbe depleted in diseased host^op some Bacteroides intestinalis^c

depletion of Bacteroidales in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000360

https://www.ncbi.nlm.nih.gov/pubmed/26170900

is equivalent to: has participant^op some Bacteroidales^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Bacteroidetes in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Bacteroidales^c
has sub-classes: 'depletion of Bacteroides in colorectal cancer human gut'^c, depletion of Porphyromonadaceae in colorectal cancer human gut^c, depletion of Prevotellaceae in colorectal cancer human gut^c, depletion of Rikenellaceae in colorectal cancer human gut^c

depletion of Bacteroides fragilis in RA human gut compared to fibromyalgia patients^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000425

is equivalent to: has participant^op some Bacteroides fragilis^c and (microbial population phenotype in host^op some decreased organism quantity compared with fibromyalgia patients^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: depletion of Bacteroides in RA human gut compared to fibromyalgia patients^c; occurs in^op some lower digestive tract^c; has microbe depleted in diseased host^op some Bacteroides fragilis^c

depletion of Bacteroides in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000074

is equivalent to: has participant^op some Bacteroides^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Bacteroides^c; occurs in^op some lower digestive tract^c
has sub-classes: expansion of Bacteroides fragilis in RA human gut^c

depletion of Bacteroides in RA human gut compared to fibromyalgia patients^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000418

is equivalent to: has participant^op some Bacteroides^c and (microbial population phenotype in host^op some decreased organism quantity compared with fibromyalgia patients^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe depleted in diseased host^op some Bacteroides^c
has sub-classes: depletion of Bacteroides fragilis in RA human gut compared to fibromyalgia patients^c

depletion of Bacteroidetes in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000357

https://www.ncbi.nlm.nih.gov/pubmed/26170900

is equivalent to: has participant^op some Bacteroidetes^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Bacteroidetes^c
has sub-classes: depletion of Bacteroidales in colorectal cancer human gut^c

depletion of Bifidobacterium bifidum in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000039

is equivalent to: has participant^op some Bifidobacterium bifidum^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Bifidobacterium bifidum^c; occurs in^op some lower digestive tract^c

depletion of Bifidobacterium bifidum in RA human gut compared to fibromyalgia patients^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000438

is equivalent to: has participant^op some Bifidobacterium bifidum^c and (microbial population phenotype in host^op some decreased organism quantity compared with fibromyalgia patients^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Bifidobacterium bifidum^c; occurs in^op some lower digestive tract^c

depletion of Bifidobacterium in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000393

https://www.ncbi.nlm.nih.gov/pubmed/25758642

is equivalent to: has participant^op some Bifidobacterium^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Bifidobacterium^c
has sub-classes: depletion of B. animalis in colorectal cancer human gut^c, depletion of B. longum in colorectal cancer human gut^c

depletion of Blautia coccoides in RA human gut compared to fibromyalgia patients^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000413

is equivalent to: has participant^op some Blautia coccoides^c and (microbial population phenotype in host^op some decreased organism quantity compared with fibromyalgia patients^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Blautia coccoides^c; occurs in^op some lower digestive tract^c

depletion of Blautia in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000382

https://www.ncbi.nlm.nih.gov/pubmed/ 23397545

is equivalent to: has participant^op some Blautia^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Lachnospiraceae in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Blautia^c

depletion of Burkholderia in RA human respiratory airway^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000216

is equivalent to: has participant^op some Burkholderia^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some respiratory airway^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human respiratory airway microbiome interaction^c; occurs in^op some respiratory airway^c; has microbe depleted in diseased host^op some Burkholderia^c

depletion of Capnocytophaga gingivalis in SLE human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000237

is equivalent to: has participant^op some Capnocytophaga gingivalis^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: SLE human oral cavity microbiome interaction^c; occurs in^op some oral cavity^c; has microbe depleted in diseased host^op some Capnocytophaga gingivalis^c

depletion of Cardiobacterium in RA human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000086

is equivalent to: has participant^op some Cardiobacterium^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human oral cavity microbiome interaction^c; has microbe depleted in diseased host^op some Cardiobacterium^c; occurs in^op some oral cavity^c

depletion of Citrobacter in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000058

is equivalent to: has participant^op some Citrobacter^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Citrobacter^c

depletion of Clostridia in SLE human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000212

is equivalent to: has participant^op some Clostridia^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: depletion of Firmicutes in SLE human gut^c; has microbe depleted in diseased host^op some Clostridia^c; occurs in^op some lower digestive tract^c
has sub-classes: depletion of Clostridiales in SLE human gut^c

depletion of Clostridiaceae in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000338

https://www.ncbi.nlm.nih.gov/pubmed/24316595

is equivalent to: has participant^op some Clostridiaceae^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Clostridiales in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Clostridiaceae^c

depletion of Clostridiales in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000353

https://www.ncbi.nlm.nih.gov/pubmed/25104642

is equivalent to: has participant^op some Clostridiales^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Firmicutes in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Clostridiales^c
has sub-classes: depletion of Anaerovorax in colorectal cancer human gut^c, depletion of Clostridiaceae in colorectal cancer human gut^c, depletion of Eubacteriaceae in colorectal cancer human gut^c, depletion of Lachnospiraceae in colorectal cancer human gut^c, depletion of Ruminococcaceae in colorectal cancer human gut^c

depletion of Clostridiales in SLE human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000213

is equivalent to: has participant^op some Clostridiales^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: depletion of Clostridia in SLE human gut^c; occurs in^op some lower digestive tract^c; has microbe depleted in diseased host^op some Clostridiales^c

depletion of Clostridiales in SLE human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000097

is equivalent to: has participant^op some Clostridiales^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: SLE human oral cavity microbiome interaction^c; occurs in^op some oral cavity^c; has microbe depleted in diseased host^op some Clostridiales^c

depletion of Coprobacillus in PsA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000158

is equivalent to: has participant^op some Coprobacillus^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some psoriatic arthritis^c)))
has super-classes: PsA human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe depleted in diseased host^op some Coprobacillus^c

depletion of Coprococcus catus in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000142

is equivalent to: has participant^op some Coprococcus catus^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: depletion of Lachnospiraceae in gout human gut^c; occurs in^op some lower digestive tract^c; has microbe depleted in diseased host^op some Coprococcus catus^c

depletion of Coprococcus in PsA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000275

is equivalent to: has participant^op some Coprococcus^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some psoriatic arthritis^c)))
has super-classes: PsA human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Coprococcus^c; occurs in^op some lower digestive tract^c

depletion of Cronobacter in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000307

is equivalent to: has participant^op some Cronobacter^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Cronobacter^c

depletion of D. invisus in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000324

https://www.ncbi.nlm.nih.gov/pubmed/23940645

is equivalent to: has participant^op some Dialister invisus^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Firmicutes in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Dialister invisus^c

depletion of D. pneumosintes in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000325

https://www.ncbi.nlm.nih.gov/pubmed/23940645

is equivalent to: has participant^op some Dialister pneumosintes^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Firmicutes in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Dialister pneumosintes^c

depletion of D.formicigenerans in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000319

https://www.ncbi.nlm.nih.gov/pubmed/23940645

is equivalent to: has participant^op some Dorea formicigenerans^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Lachnospiraceae in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Dorea formicigenerans^c

depletion of Dialister in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000149

is equivalent to: has participant^op some Dialister^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: gout human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Dialister^c; occurs in^op some lower digestive tract^c

depletion of Dialister in SLE human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000073

is equivalent to: has participant^op some Dialister^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: SLE human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Dialister^c

depletion of Eikenella in RA human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000087

is equivalent to: has participant^op some Eikenella^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human oral cavity microbiome interaction^c; has microbe depleted in diseased host^op some Eikenella^c; occurs in^op some oral cavity^c

depletion of Eubacteriaceae in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000311

is equivalent to: has participant^op some Eubacteriaceae^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Clostridiales in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Eubacteriaceae^c
has sub-classes: depletion of Eubacterium ventriosum in colorectal cancer human gut^c

depletion of Eubacterium ventriosum in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000126

is equivalent to: has participant^op some Eubacterium ventriosum^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Eubacteriaceae in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Eubacterium ventriosum^c

depletion of F. prausnitzii in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000381

https://www.ncbi.nlm.nih.gov/pubmed/23397545

is equivalent to: has participant^op some Faecalibacterium prausnitzii^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Ruminococcaceae in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Faecalibacterium prausnitzii^c

depletion of Faecalibacterium in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000098

is equivalent to: has participant^op some Faecalibacterium^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe depleted in diseased host^op some Faecalibacterium^c
has sub-classes: depletion of Faecalibacterium prausnitzii in ERA human gut^c

depletion of Faecalibacterium prausnitzii in ERA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000269

is equivalent to: has participant^op some Faecalibacterium prausnitzii^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some enthesitis-related juvenile idiopathic arthritis^c)))
has super-classes: depletion of Faecalibacterium in RA human gut^c; ERA human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Faecalibacterium prausnitzii^c; occurs in^op some lower digestive tract^c

depletion of Faecalibacterium prausnitzii in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000143

is equivalent to: has participant^op some Faecalibacterium prausnitzii^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: depletion of Ruminococcaceae in gout human gut^c; occurs in^op some lower digestive tract^c; has microbe depleted in diseased host^op some Faecalibacterium prausnitzii^c

depletion of Firmicutes in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000356

https://www.ncbi.nlm.nih.gov/pubmed/26170900

is equivalent to: has participant^op some Firmicutes^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Firmicutes^c
has sub-classes: depletion of Anoxybacillus in colorectal cancer human gut^c, depletion of Clostridiales in colorectal cancer human gut^c, depletion of D. invisus in colorectal cancer human gut^c, depletion of D. pneumosintes in colorectal cancer human gut^c, depletion of Lactobacillaceae in colorectal cancer human gut^c, depletion of M. hypermegale in colorectal cancer human gut^c, depletion of Streptococcus in colorectal cancer human gut^c

depletion of Firmicutes in SLE human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000112

is equivalent to: has participant^op some Firmicutes^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: SLE human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Firmicutes^c; occurs in^op some lower digestive tract^c
has sub-classes: depletion of Clostridia in SLE human gut^c

depletion of Haemophilus in RA human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000084

is equivalent to: has participant^op some Haemophilus^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human oral cavity microbiome interaction^c; has microbe depleted in diseased host^op some Haemophilus^c; occurs in^op some oral cavity^c
has sub-classes: depletion of Haemophilus spp. in RA human oral cavity^c

depletion of Haemophilus parainfluenzae in SLE human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000239

is equivalent to: has participant^op some Haemophilus parainfluenzae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: SLE human oral cavity microbiome interaction^c; occurs in^op some oral cavity^c; has microbe expanded in diseased host^op some Haemophilus parainfluenzae^c

depletion of Haemophilus spp. in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000452

is equivalent to: has participant^op some Haemophilus sp.^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Haemophilus sp.^c; occurs in^op some lower digestive tract^c

depletion of Haemophilus spp. in RA human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000092

is equivalent to: has participant^op some Haemophilus sp.^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: depletion of Haemophilus in RA human oral cavity^c; occurs in^op some oral cavity^c; has microbe depleted in diseased host^op some Haemophilus sp.^c

depletion of Kingella in RA human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000088

is equivalent to: has participant^op some Kingella^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human oral cavity microbiome interaction^c; occurs in^op some oral cavity^c; has microbe expanded in diseased host^op some Kingella^c

depletion of Klebsiella pneumoniae in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000034

is equivalent to: has participant^op some Klebsiella pneumoniae^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Klebsiella pneumoniae^c; occurs in^op some lower digestive tract^c

depletion of Kluyvera in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000308

is equivalent to: has participant^op some Kluyvera^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Kluyvera^c

depletion of L. acidophilus in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000351

https://www.ncbi.nlm.nih.gov/pubmed/25439270

is equivalent to: has participant^op some Lactobacillus acidophilus^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Lactobacillaceae in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Lactobacillus acidophilus^c

depletion of L. bovis in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000320

https://www.ncbi.nlm.nih.gov/pubmed/23940645

is equivalent to: has participant^op some Lachnobacterium bovis^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Lachnospiraceae in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Lachnobacterium bovis^c

depletion of L. rhamnosus in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000383

https://www.ncbi.nlm.nih.gov/pubmed/25439270

is equivalent to: has participant^op some Lactobacillus rhamnosus^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Lactobacillaceae in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Lactobacillus rhamnosus^c

depletion of L.pectinoschiza in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000321

https://www.ncbi.nlm.nih.gov/pubmed/23940645

is equivalent to: has participant^op some Lachnospira pectinoschiza^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Lachnospiraceae in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Lachnospira pectinoschiza^c

depletion of Lachnospiraceae in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000346

https://www.ncbi.nlm.nih.gov/pubmed/26170900

is equivalent to: has participant^op some Lachnospiraceae^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Clostridiales in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Lachnospiraceae^c
has sub-classes: depletion of Blautia in colorectal cancer human gut^c, depletion of D.formicigenerans in colorectal cancer human gut^c, depletion of L. bovis in colorectal cancer human gut^c, depletion of L.pectinoschiza in colorectal cancer human gut^c, depletion of P.ruminis in colorectal cancer human gut^c, depletion of R. hominis in colorectal cancer human gut^c

depletion of Lachnospiraceae in ERA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000270

is equivalent to: has participant^op some Lachnospiraceae^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some enthesitis-related juvenile idiopathic arthritis^c)))
has super-classes: ERA human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Lachnospiraceae^c; occurs in^op some lower digestive tract^c
has sub-classes: depletion of [Clostridium] clostridioforme in ERA human gut^c

depletion of Lachnospiraceae in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000127

is equivalent to: has participant^op some Lachnospiraceae^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: gout human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe depleted in diseased host^op some Lachnospiraceae^c
has sub-classes: depletion of Coprococcus catus in gout human gut^c, depletion of Robinsoniella in gout human gut^c

depletion of Lactobacillaceae in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000379

https://www.ncbi.nlm.nih.gov/pubmed/ 23397545

is equivalent to: has participant^op some Lactobacillaceae^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Firmicutes in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Lactobacillaceae^c
has sub-classes: 'depletion of L. reuteri in colorectal cancer human gut'^c, depletion of L. acidophilus in colorectal cancer human gut^c, depletion of L. rhamnosus in colorectal cancer human gut^c

depletion of Lactobacillus in SLE mouse gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000172

is equivalent to: has participant^op some Lactobacillus^c and ((part of^op some Mus musculus^c and (has disposition^op some systemic lupus erythematosus^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: SLE mouse-gut microbiome interaction^c; has participant^op some Lactobacillus^c and ((part of^op some Mus musculus^c and (has disposition^op some systemic lupus erythematosus^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)

depletion of M. hypermegale in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000326

https://www.ncbi.nlm.nih.gov/pubmed/23940645

is equivalent to: has participant^op some Megamonas hypermegale^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Firmicutes in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Megamonas hypermegale^c

depletion of Malassezia pachydermatis in PsA human skin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000170

https://www.ncbi.nlm.nih.gov/pubmed/?term= 116891514

is equivalent to: has participant^op some Malassezia pachydermatis^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some zone of skin^c and (part of^op some Homo sapiens^c and (has disease^op some psoriatic arthritis^c)))
has super-classes: PsA human zone of skin microbiome interaction^c; occurs in^op some zone of skin^c; has microbe depleted in diseased host^op some Malassezia pachydermatis^c

depletion of Malassezia restricta in PsA human skin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000168

https://www.ncbi.nlm.nih.gov/pubmed/?term= 18294199

is equivalent to: has participant^op some Malassezia restricta^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some zone of skin^c and (part of^op some Homo sapiens^c and (has disease^op some psoriatic arthritis^c)))
has super-classes: PsA human zone of skin microbiome interaction^c; has microbe depleted in diseased host^op some Malassezia restricta^c; occurs in^op some zone of skin^c

depletion of Malassezia sympodialis in PsA human skin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000169

https://www.ncbi.nlm.nih.gov/pubmed/?term= 116891514

is equivalent to: has participant^op some Malassezia sympodialis^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some zone of skin^c and (part of^op some Homo sapiens^c and (has disease^op some psoriatic arthritis^c)))
has super-classes: PsA human zone of skin microbiome interaction^c; occurs in^op some zone of skin^c; has microbe depleted in diseased host^op some Malassezia sympodialis^c

depletion of Megamonas hypermegale in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000042

is equivalent to: has participant^op some Megamonas hypermegale^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Megamonas hypermegale^c; occurs in^op some lower digestive tract^c

depletion of Microbacterium in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000314

https://www.ncbi.nlm.nih.gov/pubmed/23497613

is equivalent to: has participant^op some Microbacterium^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Microbacterium^c

depletion of Neisseria sp. in RA human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000174

is equivalent to: has participant^op some Neisseria sp.^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human oral cavity microbiome interaction^c; has microbe expanded in diseased host^op some Neisseria sp.^c; occurs in^op some oral cavity^c

depletion of Odoribacter in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000146

is equivalent to: has participant^op some Odoribacter^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: gout human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe depleted in diseased host^op some Odoribacter^c

depletion of Oscillibacter in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000144

is equivalent to: has participant^op some Oscillibacter^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: gout human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe depleted in diseased host^op some Oscillibacter^c

depletion of P. oris in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000318

https://www.ncbi.nlm.nih.gov/pubmed/23940645

is equivalent to: has participant^op some Prevotella oris^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Prevotellaceae in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Prevotella oris^c

depletion of P.copri in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000317

https://www.ncbi.nlm.nih.gov/pubmed/23940645

is equivalent to: has participant^op some Prevotella copri^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Prevotellaceae in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Prevotella copri^c

depletion of P.ruminis in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000322

https://www.ncbi.nlm.nih.gov/pubmed/23940645

is equivalent to: has participant^op some Pseudobutyrivibrio ruminis^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Lachnospiraceae in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Pseudobutyrivibrio ruminis^c

depletion of Parabacteroides in PsA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000157

is equivalent to: has participant^op some Parabacteroides^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some psoriatic arthritis^c)))
has super-classes: PsA human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Parabacteroides^c; occurs in^op some lower digestive tract^c

depletion of Photobacterium in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000124

is equivalent to: has participant^op some Photobacterium^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: depletion of Vibrionaceae in gout human gut^c; occurs in^op some lower digestive tract^c; has microbe depleted in diseased host^op some Photobacterium^c

depletion of Porphyromonadaceae in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000337

https://www.ncbi.nlm.nih.gov/pubmed/24194538

is equivalent to: has participant^op some Porphyromonadaceae^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Bacteroidales in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Porphyromonadaceae^c

depletion of Porphyromonas in RA human gut compared to fibromyalgia patients^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000075

is equivalent to: has participant^op some Porphyromonas^c and (microbial population phenotype in host^op some decreased organism quantity compared with fibromyalgia patients^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe depleted in diseased host^op some Porphyromonas^c

depletion of Porphyromonas in RA human respiratory airway^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000079

is equivalent to: has participant^op some Porphyromonas^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some respiratory airway^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human respiratory airway microbiome interaction^c; occurs in^op some respiratory airway^c; has microbe depleted in diseased host^op some Porphyromonas^c

depletion of Prevotella copri in ERA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000266

is equivalent to: has participant^op some Prevotella copri^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some enthesitis-related juvenile idiopathic arthritis^c)))
has super-classes: depletion of Prevotellaceae in ERA human gut^c; has microbe depleted in diseased host^op some Prevotella copri^c; occurs in^op some lower digestive tract^c

depletion of Prevotella in diarrheal patient gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000090

is equivalent to: has microbe depleted in diseased host^op some Prevotella^c and ((part of^op some Homo sapiens^c and (has disease^op some diarrhea^c)) and (located in^op some lower digestive tract^c))
has super-classes: diarrheal patient-gut microbiome interaction^c; has microbe depleted in diseased host^op some Prevotella^c

depletion of Prevotella in ERA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000268

is equivalent to: has participant^op some Prevotella stercorea^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some enthesitis-related juvenile idiopathic arthritis^c)))
has super-classes: depletion of Prevotellaceae in ERA human gut^c; has microbe depleted in diseased host^op some Prevotella stercorea^c; occurs in^op some lower digestive tract^c

depletion of Prevotella in RA human gut compared to fibromyalgia patients^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000076

is equivalent to: has participant^op some Prevotella^c and (microbial population phenotype in host^op some decreased organism quantity compared with fibromyalgia patients^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Prevotella^c; occurs in^op some lower digestive tract^c

depletion of Prevotella in RA human respiratory airway^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000080

is equivalent to: has participant^op some Prevotella^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some respiratory airway^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human respiratory airway microbiome interaction^c; occurs in^op some respiratory airway^c; has microbe depleted in diseased host^op some Prevotella^c

depletion of Prevotella pleuritidis in SLE human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000234

is equivalent to: has participant^op some Prevotella pleuritidis^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: SLE human oral cavity microbiome interaction^c; has microbe depleted in diseased host^op some Prevotella pleuritidis^c; occurs in^op some oral cavity^c

depletion of Prevotellaceae in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000336

https://www.ncbi.nlm.nih.gov/pubmed/24194538

is equivalent to: has participant^op some Prevotellaceae^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Bacteroidales in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Prevotellaceae^c
has sub-classes: depletion of P. oris in colorectal cancer human gut^c, depletion of P.copri in colorectal cancer human gut^c

depletion of Prevotellaceae in ERA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000265

is equivalent to: has participant^op some Prevotellaceae^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some enthesitis-related juvenile idiopathic arthritis^c)))
has super-classes: ERA human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Prevotellaceae^c; occurs in^op some lower digestive tract^c
has sub-classes: depletion of Prevotella copri in ERA human gut^c, depletion of Prevotella in ERA human gut^c

depletion of Propionibacterium acnes 17B in PsA human skin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000151

is equivalent to: has participant^op some Cutibacterium acnes 17B^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some zone of skin^c and (part of^op some Homo sapiens^c and (has disease^op some psoriatic arthritis^c)))
has super-classes: depletion of Actinobacteria <phylum> in PsA human skin^c; occurs in^op some zone of skin^c; has microbe depleted in diseased host^op some Cutibacterium acnes 17B^c

depletion of Propionibacterium in PsA human skin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000160

https://www.ncbi.nlm.nih.gov/pubmed/?term=22065152

is equivalent to: has participant^op some Propionibacterium^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some zone of skin^c and (part of^op some Homo sapiens^c and (has disease^op some psoriatic arthritis^c)))
has super-classes: depletion of Actinobacteria <phylum> in PsA human skin^c; occurs in^op some zone of skin^c; has microbe depleted in diseased host^op some Propionibacterium^c

depletion of Proteobacteria in PsA human skin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000162

https://www.ncbi.nlm.nih.gov/pubmed/?term=3750937

is equivalent to: has participant^op some Proteobacteria^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some zone of skin^c and (part of^op some Homo sapiens^c and (has disease^op some psoriatic arthritis^c)))
has super-classes: PsA human zone of skin microbiome interaction^c; has microbe depleted in diseased host^op some Proteobacteria^c; occurs in^op some zone of skin^c

depletion of Pseudobutyrivibrio in PsA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000155

is equivalent to: has participant^op some Pseudobutyrivibrio^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some psoriatic arthritis^c)))
has super-classes: PsA human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Pseudobutyrivibrio^c; occurs in^op some lower digestive tract^c

depletion of Pseudobutyrivibrio in SLE human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000081

is equivalent to: has participant^op some Pseudobutyrivibrio^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: SLE human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Pseudobutyrivibrio^c; occurs in^op some lower digestive tract^c

depletion of Pseudomonas sp. in SLE human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000235

is equivalent to: has participant^op some Pseudomonas sp.^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: SLE human oral cavity microbiome interaction^c; occurs in^op some oral cavity^c; has microbe depleted in diseased host^op some Pseudomonas sp.^c

depletion of R. hominis in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000412

https://www.ncbi.nlm.nih.gov/pubmed/24021287

is equivalent to: has participant^op some Roseburia hominis^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Lachnospiraceae in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Roseburia hominis^c

depletion of R.albus in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000323

https://www.ncbi.nlm.nih.gov/pubmed/23940645

is equivalent to: has participant^op some Ruminococcus albus^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Ruminococcus in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Ruminococcus albus^c

depletion of Rikenellaceae in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000361

https://www.ncbi.nlm.nih.gov/pubmed/26170900

is equivalent to: has participant^op some Rikenellaceae^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Bacteroidales in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Rikenellaceae^c

depletion of Robinsoniella in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000148

is equivalent to: has participant^op some Robinsoniella^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: depletion of Lachnospiraceae in gout human gut^c; has microbe depleted in diseased host^op some Robinsoniella^c; occurs in^op some lower digestive tract^c

depletion of Rothia aeria in RA human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000089

is equivalent to: has participant^op some Rothia aeria^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human oral cavity microbiome interaction^c; occurs in^op some oral cavity^c; has microbe expanded in diseased host^op some Rothia aeria^c

depletion of Ruminococcaceae in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000378

https://www.ncbi.nlm.nih.gov/pubmed/22761885

is equivalent to: has participant^op some Ruminococcaceae^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Clostridiales in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Ruminococcaceae^c
has sub-classes: depletion of F. prausnitzii in colorectal cancer human gut^c, depletion of Ruminococcus in colorectal cancer human gut^c, depletion of Subdoligranulum sp. 60_17 in colorectal cancer human gut^c

depletion of Ruminococcaceae in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000128

is equivalent to: has participant^op some Ruminococcaceae^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: gout human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe depleted in diseased host^op some Ruminococcaceae^c
has sub-classes: depletion of Faecalibacterium prausnitzii in gout human gut^c, depletion of Ruminococcus sp. in gout human gut^c, depletion of Subdoligranulum in gout human gut^c

depletion of Ruminococcus in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000392

https://www.ncbi.nlm.nih.gov/pubmed/25758642

is equivalent to: has participant^op some Ruminococcus^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Ruminococcaceae in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Ruminococcus^c
has sub-classes: depletion of R.albus in colorectal cancer human gut^c

depletion of Ruminococcus in PsA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000154

is equivalent to: has participant^op some Ruminococcus^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some psoriatic arthritis^c)))
has super-classes: PsA human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Ruminococcus^c; occurs in^op some lower digestive tract^c

depletion of Ruminococcus sp. in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000145

is equivalent to: has participant^op some Ruminococcus sp.^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: depletion of Ruminococcaceae in gout human gut^c; occurs in^op some lower digestive tract^c; has microbe depleted in diseased host^op some Ruminococcus sp.^c

depletion of S. thermophilus in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000391

https://www.ncbi.nlm.nih.gov/pubmed/25758642

is equivalent to: has participant^op some Streptococcus thermophilus^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Streptococcus in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Streptococcus thermophilus^c

depletion of Salmonella enterica subsp. enterica in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000310

is equivalent to: has participant^op some Salmonella enterica subsp. enterica^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Salmonella enterica subsp. enterica^c

depletion of Serratia in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000309

is equivalent to: has participant^op some Serratia^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Serratia^c

depletion of Shigella in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000062

is equivalent to: has participant^op some Shigella^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Shigella^c

depletion of Streptococcus in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000394

https://www.ncbi.nlm.nih.gov/pubmed/25758642

is equivalent to: has participant^op some Streptococcus^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Firmicutes in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Streptococcus^c
has sub-classes: depletion of S. thermophilus in colorectal cancer human gut^c

depletion of Streptococcus sanguinis in SLE human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000238

is equivalent to: has participant^op some Streptococcus sanguinis^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: SLE human oral cavity microbiome interaction^c; has microbe depleted in diseased host^op some Streptococcus sanguinis^c; occurs in^op some oral cavity^c

depletion of Subdoligranulum in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000147

is equivalent to: has participant^op some Subdoligranulum^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: depletion of Ruminococcaceae in gout human gut^c; has microbe depleted in diseased host^op some Subdoligranulum^c; occurs in^op some lower digestive tract^c

depletion of Subdoligranulum sp. 60_17 in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000430

https://www.ncbi.nlm.nih.gov/pubmed/28827587

is equivalent to: has participant^op some Subdoligranulum sp. 60_17^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: depletion of Ruminococcaceae in colorectal cancer human gut^c; has microbe depleted in diseased host^op some Subdoligranulum sp. 60_17^c

depletion of Sutterella wadsworthensis in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000041

is equivalent to: has participant^op some Sutterella wadsworthensis^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe depleted in diseased host^op some Sutterella wadsworthensis^c

depletion of Treponema in RA human respiratory airway^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000215

is equivalent to: has participant^op some Treponema^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some respiratory airway^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human respiratory airway microbiome interaction^c; has participant^op some Treponema^c and (has quality^op some decreased organism quantity compared with healthy controls^c) and (located in^op some respiratory airway^c); occurs in^op some respiratory airway^c

depletion of Treponema maltophilum in SLE human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000236

is equivalent to: has participant^op some Treponema maltophilum^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: SLE human oral cavity microbiome interaction^c; occurs in^op some oral cavity^c; has microbe depleted in diseased host^op some Treponema maltophilum^c

depletion of Veillonella in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000040

is equivalent to: has participant^op some Veillonella^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Veillonella^c; occurs in^op some lower digestive tract^c

depletion of Verrucomicrobia in PsA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000156

is equivalent to: has participant^op some Verrucomicrobia^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some psoriatic arthritis^c)))
has super-classes: PsA human-gut microbiome interaction^c; has microbe depleted in diseased host^op some Verrucomicrobia^c; occurs in^op some lower digestive tract^c
has sub-classes: depletion of Akkermansia in PsA human gut^c

depletion of Vibrio in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000125

is equivalent to: has participant^op some Vibrio^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: depletion of Vibrionaceae in gout human gut^c; has microbe depleted in diseased host^op some Vibrio^c; occurs in^op some lower digestive tract^c

depletion of Vibrionaceae in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000123

is equivalent to: has participant^op some Vibrionaceae^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: gout human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe depleted in diseased host^op some Vibrionaceae^c
has sub-classes: depletion of Photobacterium in gout human gut^c, depletion of Vibrio in gout human gut^c

descreased microbiome organism diversity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000033

has super-classes: quality^c

Desulfovibrionaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_194924

has super-classes: delta/epsilon subdivisions^c
has sub-classes: Bilophila^c

device^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000968

has super-classes: processed material^c; has function^op some function^c; is_specified_output_of^op some material processing^c
has sub-classes: measurement device^c

Dialister^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_39948

has super-classes: Veillonellaceae^c
has sub-classes: Dialister invisus^c, Dialister pneumosintes^c

Dialister invisus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_218538

has super-classes: Dialister^c

Dialister pneumosintes^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_39950

has super-classes: Dialister^c

diarrhea^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_13250

has super-classes: gastrointestinal system disease^c

Diarrhea^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HP_0002014

has super-classes: Phenotypic abnormality^c
has sub-classes: Chronic diarrhea^c

diarrheal patient-gut microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000067

has super-classes: human-gut microbiome interaction^c; has participant^op some Homo sapiens^c and (has disease^op some diarrhea^c)
has sub-classes: depletion of Prevotella in diarrheal patient gut^c, expansion of Natronobacillus in diarrheal patient gut^c, expansion of unclassified Proteobacteria in diarrheal patient gut^c

Dictyostelium discoideum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_44689

has super-classes: Eukaryota^c

differentially enriched microbial marker for disease^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000480

has super-classes: microbe^c

differentially enriched microbial marker for dysbiosis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000479

has super-classes: microbe^c

digestive system^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001007

has super-classes: anatomical structure^c

digestive system element^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0013765

has super-classes: organ^c
has sub-classes: large intestine^c, small intestine^c, stomach^c

Dikarya^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_451864

has super-classes: Fungi^c
has sub-classes: Ascomycota^c, Basidiomycota^c

directive information entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000033

has super-classes: information content entity^c; is about^op some realizable entity^c
has sub-classes: action specification^c, objective specification^c, plan specification^c

disease^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_4

has super-classes: disposition^c
has sub-classes: cancer^c, disease of anatomical entity^c
is in domain of: disease in host with susceptibly depleted microbe^op, disease in host with susceptibly expanded microbe^op
is in range of: microbe susceptibly changed in host with disease^op, microbe susceptibly depleted in host with disease^op, microbe susceptibly expanded in host with disease^op

disease of anatomical entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_7

has super-classes: disease^c
has sub-classes: chronic obstructive pulmonary disease^c, endocrine system disease^c, gastrointestinal system disease^c, immune system disease^c, musculoskeletal system disease^c

disposition^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000016

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: realizable entity^c
has sub-classes: disease^c, disposition to infect an organism^c, function^c
is in range of: has disposition^op

disposition to infect an organism^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_1110093

has super-classes: disposition^c; realized in^op only infection process^c

Diutina rugosa^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5481

has super-classes: Saccharomycetales^c

DMARD^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000465

has super-classes: drug product^c

DNA extract^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001051

has super-classes: nucleic acid extract^c; has grain^op some deoxyribonucleic acid^c; is_specified_output_of^op some DNA extraction^c

DNA extraction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000257

has super-classes: nucleic acid extraction^c; has_specified_output^op some deoxyribonucleic acid^c

DNA sequence data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001573

has super-classes: sequence data^c; is about^op some primary structure of DNA macromolecule^c

DNA sequencer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0400103

has super-classes: measurement device^c; has function^op some measure function^c

DNA sequencing assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000626

is equivalent to: sequencing assay^c and ((realizes^op some function^c and (inheres in^op some DNA sequencer^c)) and (has_specified_input^op some DNA sequencer^c)) and ((realizes^op some evaluant role^c and (role of^op some DNA extract^c)) and (has_specified_input^op some DNA extract^c and (has role^op some evaluant role^c))) and (has_specified_output^op some DNA sequence data^c)
has super-classes: sequencing assay^c
has sub-classes: whole genome sequencing assay^c

Dolosicoccus paucivorans^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_84521

has super-classes: Lactobacillales^c

Dorea formicigenerans^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_39486

has super-classes: Lachnospiraceae^c

Drosophila melanogaster^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7227

has super-classes: Pancrustacea^c

drug product^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DRON_00000005

Authors:: William Hogan

has super-classes: material entity^c
has sub-classes: DMARD^c

dysbiosis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000461

An abnormal phenotype that has a microbial imbalance or maladaption on or inside the body.

has super-classes: abnormal phenotype^c

Ecdysozoa^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1206794

has super-classes: Bilateria^c
has sub-classes: Caenorhabditis elegans^c, Pancrustacea^c

ecosystem^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001110

This class will be primarily filled by inference, any environmental system which necessarily includes living parts should be autoclassified here.

has super-classes: environmental system^c
has sub-classes: biome^c, habitat^c

Eggerthella^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_84111

has super-classes: Eggerthellaceae^c; microbe susceptibly expanded in gut of human with disease^op some rheumatoid arthritis^c

Eggerthella lenta^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_84112

has super-classes: Eggerthellaceae^c; microbe susceptibly expanded in gut of human with disease^op some rheumatoid arthritis^c

Eggerthellaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1643826

has super-classes: Coriobacteriia^c
has sub-classes: Cryptobacterium curtum^c, Eggerthella^c, Eggerthella lenta^c, Gordonibacter pamelaeae^c, Slackia^c

Eikenella^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_538

has super-classes: Neisseriaceae^c; microbe susceptibly depleted in oral cavity of human with disease^op some rheumatoid arthritis^c

Eleutherodactylus lentus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_448465

has super-classes: Anura^c

endocrine gland cancer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_170

has super-classes: organ system cancer^c; endocrine system disease^c
has sub-classes: liver cancer^c, pancreatic cancer^c

endocrine system disease^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_28

has super-classes: disease of anatomical entity^c
has sub-classes: endocrine gland cancer^c, liver disease^c

Enterobacterales^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_91347

has super-classes: Gammaproteobacteria^c
has sub-classes: Enterobacteriaceae^c, Morganellaceae^c, Yersiniaceae^c

Enterobacteriaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_543

has super-classes: Enterobacterales^c
has sub-classes: Citrobacter^c, Cronobacter^c, Escherichia^c, Klebsiella^c, Kluyvera^c, Salmonella^c, Shigella^c

Enterococcaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_81852

has super-classes: Lactobacillales^c
has sub-classes: Enterococcus^c

Enterococcus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1350

has super-classes: Enterococcaceae^c
has sub-classes: Enterococcus faecalis^c

Enterococcus faecalis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1351

has super-classes: Enterococcus^c

enthesitis-related juvenile idiopathic arthritis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MONDO_0019437

has super-classes: juvenile rheumatoid arthritis^c

entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000001

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: thing^c
has sub-classes: continuant^c, occurrent^c

environmental material^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00010483

has super-classes: material entity^c

environmental material collection process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600012

has super-classes: specimen collection process^c; has_specified_input^op some environmental material^c; has_specified_output^op some specimen^c; achieves_planned_objective^op some specimen collection objective^c

environmental system^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000254

In ENVO's alignment with the Basic Formal Ontology, this class is being considered as a subclass of a proposed BFO class "system". The relation "environed_by" is also under development. Roughly, a system which includes a material entity (at least partially) within its site and causally influences that entity may be considered to environ it. Following the completion of this alignment, this class' definition and the definitions of its subclasses will be revised.

has super-classes: system^c
has sub-classes: ecosystem^c

Epsilonproteobacteria^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_29547

has super-classes: delta/epsilon subdivisions^c
has sub-classes: Campylobacterales^c, Sulfurovum^c

ERA human-gut microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000255

has super-classes: human-gut microbiome interaction^c; has participant^op some Homo sapiens^c and (has disposition^op some enthesitis-related juvenile idiopathic arthritis^c)
has sub-classes: depletion of Faecalibacterium prausnitzii in ERA human gut^c, depletion of Lachnospiraceae in ERA human gut^c, depletion of Prevotellaceae in ERA human gut^c, expansion of Akkermansia muciniphila in ERA human gut^c, expansion of Bacteroidaceae in ERA human gut^c, expansion of Badula fragilis in ERA human gut^c, expansion of Bifidobacterium in ERA human gut^c, expansion of Enterobacteriaceae in ERA human gut^c, expansion of Enterococcaceae in ERA human gut^c, expansion of Prevotella in ERA human gut^c, expansion of Yersinia in ERA human gut^c

Erysipelatoclostridium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1505663

has super-classes: Erysipelotrichaceae^c

Erysipelotrichaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_128827

has super-classes: Firmicutes^c
has sub-classes: Catenisphaera adipataccumulans^c, Coprobacillus^c, Erysipelatoclostridium^c, Holdemania^c, Solobacterium^c

Escherichia^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_561

has super-classes: Enterobacteriaceae^c; microbe susceptibly expanded in gut of human with disease^op some colorectal cancer^c
has sub-classes: Escherichia coli^c

Escherichia coli^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_562

has super-classes: Escherichia^c; microbe susceptibly expanded in gut of human with disease^op some rheumatoid arthritis^c; microbe susceptibly expanded in gut of rat with disease^op some arthritis^c
has sub-classes: Escherichia coli #1/H766^c, Escherichia coli B^c, Escherichia coli EPEC 32/73^c, Escherichia coli ETEC TW03439^c, Escherichia coli NC101^c

Escherichia coli #1/H766^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1354003

has super-classes: Escherichia coli^c

Escherichia coli B^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_37762

has super-classes: Escherichia coli^c; microbe susceptibly expanded in gut of human with disease^op some colorectal cancer^c

Escherichia coli EPEC 32/73^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_766165

has super-classes: Escherichia coli^c; participates in^op some expansion of Escherichia coli EPEC 32/73 in gout human gut^c; microbe susceptibly expanded in gut of human with disease^op some gout^c

Escherichia coli ETEC TW03439^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_697899

has super-classes: Escherichia coli^c; microbe susceptibly expanded in gut of human with disease^op some gout^c

Escherichia coli NC101^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_753642

has super-classes: Escherichia coli^c; microbe susceptibly expanded in gut of human with disease^op some colorectal cancer^c

esophageal cancer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_5041

has super-classes: gastrointestinal system cancer^c

establishing cell culture^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600036

A 'cell culture' as used here referes to a new lineage of cells in culture deriving from a single biological source.. New cultures are established through the initial isolation and culturing of cells from an organismal source, or through changes in an existing cell culture or line that result in a new culture with unique characteristics. This can occur through the passaging/selection of a primary culture into a secondary culture or line, or experimental modifications of an existing cell culture or line such as an immortalization process or other stable genetic modification. This class covers establishment of cultures of either multicellular organism cells or unicellular organisms.

has super-classes: material processing^c; has_specified_output^op some cultured cell population^c; has_specified_input^op some culture medium^c; achieves_planned_objective^op some material transformation objective^c; has_specified_input^op some cell^c

Euarchontoglires^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_314146

has super-classes: Mammalia^c
has sub-classes: Homo sapiens^c, Rodentia^c

Eubacteriaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186806

has super-classes: Clostridiales^c
has sub-classes: Eubacterium^c, Eubacterium ventriosum^c

Eubacterium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1730

has super-classes: Eubacteriaceae^c

Eubacterium ventriosum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_39496

has super-classes: Eubacteriaceae^c

Eukaryota^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2759

has super-classes: organism or virus or viroid^c; organism^c
has sub-classes: Dictyostelium discoideum^c, Mesangiospermae^c, Opisthokonta^c

Euteleostomi^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_117571

has super-classes: Vertebrata <Metazoa>^c
has sub-classes: Danio rerio^c, Tetrapoda^c

evaluant role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000067

has super-classes: role^c; inheres in^op some material entity^c; realized in^op only assay^c

excreta^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000174

has super-classes: material anatomical entity^c
has sub-classes: feces^c, urine^c

expansion of [Clostridium] asparagiforme in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000043

is equivalent to: has participant^op some [Clostridium] asparagiforme^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: expansion of Clostridia in RA human gut^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some [Clostridium] asparagiforme^c

expansion of A. actinomycetemcomitans in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000433

https://www.ncbi.nlm.nih.gov/pubmed/27810411

is equivalent to: has participant^op some Aggregatibacter actinomycetemcomitans^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Pasteurellaceae in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Aggregatibacter actinomycetemcomitans^c

expansion of A. muciniphila in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000335

https://www.ncbi.nlm.nih.gov/pubmed/24194538

is equivalent to: has participant^op some Akkermansia muciniphila^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Akkermansia muciniphila^c

expansion of A. putredinis in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000386

https://www.ncbi.nlm.nih.gov/pubmed/25758642

is equivalent to: has participant^op some Alistipes putredinis^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Alistipes in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Alistipes putredinis^c

expansion of Acetanaerobacterium in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000141

is equivalent to: has participant^op some Acetanaerobacterium^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: gout human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Acetanaerobacterium^c

expansion of Acidaminobacter in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000327

https://www.ncbi.nlm.nih.gov/pubmed/ 23940645

is equivalent to: has participant^op some Acidaminobacter^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Clostridia in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Acidaminobacter^c

expansion of Acidovorax in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000450

is equivalent to: has participant^op some Acidovorax^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Proteobacteria in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Acidovorax^c

expansion of Acinetobacter in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000440

is equivalent to: has participant^op some Acinetobacter^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Proteobacteria in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Acinetobacter^c

expansion of Actinobacteria<phylum> in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000085

is equivalent to: has participant^op some Actinobacteria <phylum>^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Actinobacteria <phylum>^c
has sub-classes: expansion of Bifidobacterium dentium in RA human gut^c, expansion of Bifidobacterium in ERA human gut^c, expansion of Collinsella aerofaciens in RA human gut^c, expansion of Eggerthella in RA human gut^c, expansion of Eggerthella lenta in RA human gut^c, expansion of Gordonibacter pamelaeae in RA human gut^c

expansion of Actinomyces in RA human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000177

is equivalent to: has participant^op some Actinomyces^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human oral cavity microbiome interaction^c; occurs in^op some oral cavity^c; has microbe expanded in diseased host^op some Actinomyces^c

expansion of Akkermansia muciniphila in ERA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000274

is equivalent to: has participant^op some Akkermansia muciniphila^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some enthesitis-related juvenile idiopathic arthritis^c)))
has super-classes: ERA human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Akkermansia muciniphila^c

expansion of Alistipes in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000341

https://www.ncbi.nlm.nih.gov/pubmed/24967088

is equivalent to: has participant^op some Alistipes^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Bacteroidales in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Alistipes^c
has sub-classes: expansion of A. putredinis in colorectal cancer human gut^c

expansion of Alistipes in SLE mouse gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000208

is equivalent to: has participant^op some Alistipes^c and ((part of^op some Mus musculus^c and (has disposition^op some systemic lupus erythematosus^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: SLE mouse-gut microbiome interaction^c; has participant^op some Alistipes^c and ((part of^op some Mus musculus^c and (has disposition^op some systemic lupus erythematosus^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)

expansion of Anaerolineaceae in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000248

is equivalent to: has participant^op some Anaerolineaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: expansion of Anaerolineales in gout human gut^c; has microbe expanded in diseased host^op some Anaerolineaceae^c; occurs in^op some lower digestive tract^c

expansion of Anaerolineae in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000246

is equivalent to: has participant^op some Anaerolineae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: expansion of Chloroflexi in gout human gut^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Anaerolineae^c

expansion of Anaerolineales in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000247

is equivalent to: has participant^op some Anaerolineales^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: gout human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Anaerolineales^c; occurs in^op some lower digestive tract^c
has sub-classes: expansion of Anaerolineaceae in gout human gut^c

expansion of Anaerotruncus in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000135

is equivalent to: has participant^op some Anaerotruncus^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: gout human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Anaerotruncus^c; occurs in^op some lower digestive tract^c

expansion of Anoxybacillus in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000444

is equivalent to: has participant^op some Anoxybacillus^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Anoxybacillus^c

expansion of Atopobium sp. in RA human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000231

is equivalent to: has participant^op some Atopobium sp.^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human oral cavity microbiome interaction^c; occurs in^op some oral cavity^c; has microbe expanded in diseased host^op some Atopobium sp.^c

expansion of B. fragilis in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000044

is equivalent to: has participant^op some Bacteroides fragilis^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Bacteroides in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Bacteroides fragilis^c

expansion of B. ovatus in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000342

https://www.ncbi.nlm.nih.gov/pubmed/24967088

is equivalent to: has participant^op some Bacteroides ovatus^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Bacteroides in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Bacteroides ovatus^c

expansion of B. wadsworthia in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000389

https://www.ncbi.nlm.nih.gov/pubmed/26073561

is equivalent to: has participant^op some Bilophila wadsworthia^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Bilophila in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Bilophila wadsworthia^c

expansion of B. xylanisolvens in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000343

https://www.ncbi.nlm.nih.gov/pubmed/24967088

is equivalent to: has participant^op some Bacteroides xylanisolvens^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Bacteroides in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Bacteroides xylanisolvens^c

expansion of B.obeum in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000441

is equivalent to: has participant^op some Blautia obeum^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Clostridia in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Blautia obeum^c

expansion of Bacteroidaceae in arthritis rat gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000192

is equivalent to: has participant^op some Bacteroidaceae^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: arthritis rat-gut microbiome interaction^c; has participant^op some Bacteroidaceae^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has sub-classes: expansion of Bacteroides fragilis in arthritis rat gut^c

expansion of Bacteroidaceae in AS human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000102

is equivalent to: has participant^op some Bacteroidaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some ankylosing spondylitis^c)))
has super-classes: AS human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Bacteroidaceae^c

expansion of Bacteroidaceae in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000366

https://www.ncbi.nlm.nih.gov/pubmed/ 23397545

is equivalent to: has participant^op some Bacteroidaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Bacteroidales in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Bacteroidaceae^c
has sub-classes: expansion of Bacteroides in colorectal cancer human gut^c

expansion of Bacteroidaceae in ERA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000256

is equivalent to: has participant^op some Bacteroidaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some enthesitis-related juvenile idiopathic arthritis^c)))
has super-classes: ERA human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Bacteroidaceae^c
has sub-classes: expansion of Bacteroides in ERA human gut^c

expansion of Bacteroidaceae in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000119

is equivalent to: has participant^op some Bacteroidaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: expansion of Bacteroidales in gout human gut^c; has microbe expanded in diseased host^op some Bacteroidaceae^c; occurs in^op some lower digestive tract^c
has sub-classes: expansion of Bacteroides in gout human gut^c

expansion of Bacteroidales in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000305

https://www.ncbi.nlm.nih.gov/pubmed/ 21647227

is equivalent to: has participant^op some Bacteroidales^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Bacteroidetes in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Bacteroidales^c
has sub-classes: expansion of Alistipes in colorectal cancer human gut^c, expansion of Bacteroidaceae in colorectal cancer human gut^c, expansion of Odoribacter in colorectal cancer human gut^c, expansion of Parabacteroides in colorectal cancer human gut^c, expansion of Porphyromonas in colorectal cancer human gut^c, expansion of Prevotellaceae in colorectal cancer human gut^c

expansion of Bacteroidales in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000117

is equivalent to: has participant^op some Bacteroidales^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: expansion of Bacteroidetes in gout human gut^c; has microbe expanded in diseased host^op some Bacteroidales^c; occurs in^op some lower digestive tract^c
has sub-classes: expansion of Bacteroidaceae in gout human gut^c, expansion of Barnesiella in gout human gut^c, expansion of Paraprevotella in gout human gut^c, expansion of Porphyromonadaceae in gout human gut^c

expansion of Bacteroidales in SLE human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000211

is equivalent to: has participant^op some Bacteroidales^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: expansion of Bacteroidia in SLE human gut^c; has microbe expanded in diseased host^op some Bacteroidales^c; occurs in^op some lower digestive tract^c
has sub-classes: expansion of Prevotella in SLE human gut^c

expansion of Bacteroides caccae in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000137

is equivalent to: has participant^op some Bacteroides caccae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: expansion of Bacteroides in gout human gut^c; has microbe expanded in diseased host^op some Bacteroides caccae^c; occurs in^op some lower digestive tract^c

expansion of Bacteroides fragilis in arthritis rat gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000194

is equivalent to: has participant^op some Bacteroides fragilis^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: expansion of Bacteroidaceae in arthritis rat gut^c; has participant^op some Bacteroides fragilis^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)

expansion of Bacteroides fragilis in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000330

is equivalent to: has participant^op some Bacteroides fragilis^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: depletion of Bacteroides in RA human gut^c; has microbe depleted in diseased host^op some Bacteroides fragilis^c; occurs in^op some lower digestive tract^c

expansion of Bacteroides in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000333

https://www.ncbi.nlm.nih.gov/pubmed/25439270

is equivalent to: has participant^op some Bacteroides^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Bacteroidaceae in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Bacteroides^c
has sub-classes: expansion of B. fragilis in colorectal cancer human gut^c, expansion of B. ovatus in colorectal cancer human gut^c, expansion of B. xylanisolvens in colorectal cancer human gut^c, expansion of Bacteroides sp. in colorectal cancer human gut^c

expansion of Bacteroides in ERA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000259

is equivalent to: has participant^op some Bacteroides^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some enthesitis-related juvenile idiopathic arthritis^c)))
has super-classes: expansion of Bacteroidaceae in ERA human gut^c; has microbe expanded in diseased host^op some Bacteroides^c; occurs in^op some lower digestive tract^c
has sub-classes: expansion of Bacteroides plebeius in ERA human gut^c

expansion of Bacteroides in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000116

is equivalent to: has participant^op some Bacteroides^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: expansion of Bacteroidaceae in gout human gut^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Bacteroides^c
has sub-classes: expansion of Bacteroides caccae in gout human gut^c, expansion of Bacteroides sp in gout human gut^c, expansion of Bacteroides xylanisolvens XB1A in gout human gut^c

expansion of Bacteroides plebeius in ERA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000264

is equivalent to: has participant^op some Bacteroides plebeius^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some enthesitis-related juvenile idiopathic arthritis^c)))
has super-classes: expansion of Bacteroides in ERA human gut^c; has microbe expanded in diseased host^op some Bacteroides plebeius^c; occurs in^op some lower digestive tract^c

expansion of Bacteroides sp in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000138

is equivalent to: has participant^op some Bacteroides sp.^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: expansion of Bacteroides in gout human gut^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Bacteroides sp.^c

expansion of Bacteroides sp. in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000429

https://www.ncbi.nlm.nih.gov/pubmed/28827587

is equivalent to: has participant^op some Bacteroides sp.^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Bacteroides in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Bacteroides sp.^c

expansion of Bacteroides sp. in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000458

is equivalent to: has participant^op some Bacteroides sp.^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: segregation of Prevotella or Bacteroides dominance in RA human gut^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Bacteroides sp.^c

expansion of Bacteroides vulgatus in AS rat gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000182

is equivalent to: has participant^op some Bacteroides vulgatus^c and ((part of^op some Rattus^c and (has disposition^op some ankylosing spondylitis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: AS rat-gut microbiome interaction^c; has participant^op some Bacteroides vulgatus^c and ((part of^op some Rattus^c and (has disposition^op some ankylosing spondylitis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)

expansion of Bacteroides xylanisolvens XB1A in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000139

is equivalent to: has participant^op some Bacteroides xylanisolvens XB1A^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: expansion of Bacteroides in gout human gut^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Bacteroides xylanisolvens XB1A^c

expansion of Bacteroidetes in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000397

https://www.ncbi.nlm.nih.gov/pubmed/26073561

is equivalent to: has participant^op some Bacteroidetes^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Bacteroidetes^c
has sub-classes: expansion of Bacteroidales in colorectal cancer human gut^c

expansion of Bacteroidetes in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000115

is equivalent to: has participant^op some Bacteroidetes^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: gout human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Bacteroidetes^c; occurs in^op some lower digestive tract^c
has sub-classes: expansion of Bacteroidales in gout human gut^c

expansion of Bacteroidetes in PsA human skin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000164

https://www.ncbi.nlm.nih.gov/pubmed/21407241 /

is equivalent to: has participant^op some Bacteroidetes^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some zone of skin^c and (part of^op some Homo sapiens^c and (has disease^op some psoriatic arthritis^c)))
has super-classes: PsA human zone of skin microbiome interaction^c; occurs in^op some zone of skin^c; has microbe expanded in diseased host^op some Bacteroidetes^c

expansion of Bacteroidetes in SLE human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000113

is equivalent to: has participant^op some Bacteroidetes^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: SLE human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Bacteroidetes^c
has sub-classes: expansion of Bacteroidia in SLE human gut^c

expansion of Bacteroidia in SLE human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000210

is equivalent to: has participant^op some Bacteroidia^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: expansion of Bacteroidetes in SLE human gut^c; has microbe expanded in diseased host^op some Bacteroidia^c; occurs in^op some lower digestive tract^c
has sub-classes: expansion of Bacteroidales in SLE human gut^c

expansion of Badula fragilis in ERA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000263

is equivalent to: has participant^op some Badula fragilis^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some enthesitis-related juvenile idiopathic arthritis^c)))
has super-classes: ERA human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Badula fragilis^c; occurs in^op some lower digestive tract^c

expansion of Barnesiella in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000132

is equivalent to: has participant^op some Barnesiella^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: expansion of Bacteroidales in gout human gut^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Barnesiella^c

expansion of Basidiomycota in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000286

is equivalent to: has participant^op some Basidiomycota^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Basidiomycota^c
has sub-classes: expansion of Malassezia in colorectal cancer human gut^c, expansion of Moniliophthora in colorectal cancer human gut^c

expansion of Beggiatoa in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000290

https://www.ncbi.nlm.nih.gov/pubmed/26408641

is equivalent to: has participant^op some Beggiatoa^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Proteobacteria in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Beggiatoa^c

expansion of Bifidobacterium dentium in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000048

is equivalent to: has participant^op some Bifidobacterium dentium^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: expansion of Actinobacteria<phylum> in RA human gut^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Bifidobacterium dentium^c

expansion of Bifidobacterium in arthritis rat gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000184

is equivalent to: has participant^op some Bifidobacterium^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: arthritis rat-gut microbiome interaction^c; has participant^op some Bifidobacterium^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)

expansion of Bifidobacterium in ERA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000273

is equivalent to: has participant^op some Bifidobacterium^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some enthesitis-related juvenile idiopathic arthritis^c)))
has super-classes: expansion of Actinobacteria<phylum> in RA human gut^c; ERA human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Bifidobacterium^c; occurs in^op some lower digestive tract^c

expansion of Bilophila in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000396

https://www.ncbi.nlm.nih.gov/pubmed/25758642

is equivalent to: has participant^op some Bilophila^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Proteobacteria in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Bilophila^c
has sub-classes: expansion of B. wadsworthia in colorectal cancer human gut^c

expansion of C. adipataccumulans in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000442

is equivalent to: has participant^op some Catenisphaera adipataccumulans^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Erysipelotrichaceae in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Catenisphaera adipataccumulans^c

expansion of C. hiranonis in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000448

is equivalent to: has participant^op some [Clostridium] hiranonis^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Peptostreptococcaceae in colorectal cancer human gut^c; has microbe expanded in diseased host^op some [Clostridium] hiranonis^c

expansion of C. Portiera in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000407

https://www.ncbi.nlm.nih.gov/pubmed/22009989

is equivalent to: has participant^op some Candidatus Portiera^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Proteobacteria in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Candidatus Portiera^c

expansion of C. rodentium in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000445

is equivalent to: has participant^op some Citrobacter rodentium^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Enterobacteriaceae in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Citrobacter rodentium^c

expansion of C. scindens in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000447

is equivalent to: has participant^op some [Clostridium] scindens^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Clostridia in colorectal cancer human gut^c; has microbe expanded in diseased host^op some [Clostridium] scindens^c

expansion of C.farmeri in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000329

https://www.ncbi.nlm.nih.gov/pubmed/ 23940645

is equivalent to: has participant^op some Citrobacter farmeri^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Enterobacteriaceae in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Citrobacter farmeri^c

expansion of C.hylemonae in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000449

is equivalent to: has participant^op some [Clostridium] hylemonae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Clostridia in colorectal cancer human gut^c; has microbe expanded in diseased host^op some [Clostridium] hylemonae^c

expansion of Campylobacter in AS human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000227

is equivalent to: has participant^op some Campylobacter^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some ankylosing spondylitis^c)))
has super-classes: AS human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Campylobacter^c

expansion of Campylobacter in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000400

https://www.ncbi.nlm.nih.gov/pubmed/23954159

is equivalent to: has participant^op some Campylobacter^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Proteobacteria in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Campylobacter^c
has sub-classes: expansion of Campylobacter jejuni in colorectal cancer human gut^c

expansion of Campylobacter jejuni in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000436

is equivalent to: has participant^op some Campylobacter jejuni^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Campylobacter in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Campylobacter jejuni^c

expansion of Candida albicans in PsA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000165

is equivalent to: has participant^op some Candida albicans^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some psoriatic arthritis^c)))
has super-classes: PsA human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Candida albicans^c

expansion of Candida albicans in PsA human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000167

is equivalent to: has participant^op some Candida albicans^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some psoriatic arthritis^c)))
has super-classes: PsA human oral cavity microbiome interaction^c; has microbe expanded in diseased host^op some Candida albicans^c; occurs in^op some oral cavity^c

expansion of Chlamydia in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000404

https://www.ncbi.nlm.nih.gov/pubmed/22687961

is equivalent to: has participant^op some Chlamydia^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Chlamydia^c

expansion of Chloroflexi in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000245

is equivalent to: has participant^op some Chloroflexi^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: gout human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Chloroflexi^c; occurs in^op some lower digestive tract^c
has sub-classes: expansion of Anaerolineae in gout human gut^c

expansion of Clostridia in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000406

https://www.ncbi.nlm.nih.gov/pubmed/22687961

is equivalent to: has participant^op some Clostridia^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Clostridia^c
has sub-classes: expansion of Acidaminobacter in colorectal cancer human gut^c, expansion of B.obeum in colorectal cancer human gut^c, expansion of C. scindens in colorectal cancer human gut^c, expansion of C.hylemonae in colorectal cancer human gut^c, expansion of Clostridiaceae in colorectal cancer human gut^c, expansion of L. bacterium in colorectal cancer human gut^c, expansion of Mogibacterium in colorectal cancer human gut^c, expansion of Peptostreptococcaceae in colorectal cancer human gut^c, expansion of Roseburia in colorectal cancer human gut^c

expansion of Clostridia in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000070

is equivalent to: has participant^op some Clostridia^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Clostridia^c; occurs in^op some lower digestive tract^c
has sub-classes: expansion of Clostridium perfringens in RA human gut^c, expansion of Lachnospiraceae bacterium in RA human gut^c, expansion of Ruminococcus lactaris in RA human gut^c, expansion of [Clostridium] asparagiforme in RA human gut^c

expansion of Clostridiaceae in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000302

https://www.ncbi.nlm.nih.gov/pubmed/ 21647227

is equivalent to: has participant^op some Clostridiaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Clostridia in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Clostridiaceae^c
has sub-classes: expansion of Clostridium sp. cp01.19 in colorectal cancer human gut^c

expansion of Clostridiales in SLE mouse gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000200

is equivalent to: has participant^op some Clostridiales^c and ((part of^op some Mus musculus^c and (has disposition^op some systemic lupus erythematosus^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: SLE mouse-gut microbiome interaction^c; has participant^op some Clostridiales^c and ((part of^op some Mus musculus^c and (has disposition^op some systemic lupus erythematosus^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has sub-classes: expansion of Lachnospiraceae in SLE mouse gut^c, expansion of Ruminococcaceae in SLE mouse gut^c

expansion of Clostridium perfringens in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000071

is equivalent to: has participant^op some Clostridium perfringens^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: expansion of Clostridia in RA human gut^c; has microbe expanded in diseased host^op some Clostridium perfringens^c; occurs in^op some lower digestive tract^c

expansion of Clostridium sp. cp01.19 in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000428

https://www.ncbi.nlm.nih.gov/pubmed/28827587

is equivalent to: has participant^op some Clostridium sp. cp01.19^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Clostridiaceae in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Clostridium sp. cp01.19^c

expansion of Collinsella aerofaciens in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000066

is equivalent to: has participant^op some Collinsella aerofaciens^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: expansion of Actinobacteria<phylum> in RA human gut^c; has microbe expanded in diseased host^op some Collinsella aerofaciens^c; occurs in^op some lower digestive tract^c

expansion of Collinsella in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000300

https://www.ncbi.nlm.nih.gov/pubmed/ 21647227

is equivalent to: has participant^op some Collinsella^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Coriobacteriaceae in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Collinsella^c

expansion of Coriobacteriaceae in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000376

https://www.ncbi.nlm.nih.gov/pubmed/25439270

is equivalent to: has participant^op some Coriobacteriaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Coriobacteriaceae^c
has sub-classes: expansion of Collinsella in colorectal cancer human gut^c

expansion of Corynebacteriales in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000249

is equivalent to: has participant^op some Corynebacteriales^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: gout human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Corynebacteriales^c; occurs in^op some lower digestive tract^c
has sub-classes: expansion of Nocardiaceae in gout human gut^c

expansion of Crenothrix in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000294

https://www.ncbi.nlm.nih.gov/pubmed/26408641

is equivalent to: has participant^op some Crenothrix^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Proteobacteria in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Crenothrix^c

expansion of Cryptobacterium curtum in RA human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000093

is equivalent to: has participant^op some Cryptobacterium curtum^c and (microbial population phenotype in host^op some decreased organism quantity compared with healthy controls^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human oral cavity microbiome interaction^c; has microbe depleted in diseased host^op some Cryptobacterium curtum^c; occurs in^op some oral cavity^c

expansion of D. paucivorans in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000427

https://www.ncbi.nlm.nih.gov/pubmed/28827587

is equivalent to: has participant^op some Dolosicoccus paucivorans^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Dolosicoccus paucivorans^c

expansion of Desulfovibrionaceae in arthritis rat gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000254

is equivalent to: has participant^op some Desulfovibrionaceae^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: arthritis rat-gut microbiome interaction^c; has participant^op some Desulfovibrionaceae^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)

expansion of Dialister in AS human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000207

is equivalent to: has participant^op some Dialister^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some ankylosing spondylitis^c)))
has super-classes: expansion of Veillonellaceae in AS human gut^c; has microbe expanded in diseased host^op some Dialister^c; occurs in^op some lower digestive tract^c

expansion of Diutina rugosa in PsA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000277

is equivalent to: has participant^op some Diutina rugosa^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some psoriatic arthritis^c)))
has super-classes: PsA human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Diutina rugosa^c

expansion of E. coli B in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000432

https://www.ncbi.nlm.nih.gov/pubmed/16902142

is equivalent to: has participant^op some Escherichia coli B^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Escherichia in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Escherichia coli B^c

expansion of E. coli ETEC TW03439 in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000131

is equivalent to: has participant^op some Escherichia coli ETEC TW03439^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: gout human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Escherichia coli ETEC TW03439^c

expansion of E. coli in arthritis rat gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000190

is equivalent to: has participant^op some Escherichia coli^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: arthritis rat-gut microbiome interaction^c; has participant^op some Escherichia coli^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)

expansion of E. coli NC101 in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000388

https://www.ncbi.nlm.nih.gov/pubmed/25758642

is equivalent to: has participant^op some Escherichia coli NC101^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Escherichia in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Escherichia coli NC101^c

expansion of E. faecalis in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000446

is equivalent to: has participant^op some Enterococcus faecalis^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Enterococcaceae in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Enterococcus faecalis^c

expansion of Eggerthella in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000222

is equivalent to: has participant^op some Eggerthella^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: expansion of Actinobacteria<phylum> in RA human gut^c; has microbe expanded in diseased host^op some Eggerthella^c; occurs in^op some lower digestive tract^c

expansion of Eggerthella in SLE human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000233

is equivalent to: has participant^op some Eggerthella^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: SLE human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Eggerthella^c

expansion of Eggerthella lenta in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000045

is equivalent to: has participant^op some Eggerthella lenta^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: expansion of Actinobacteria<phylum> in RA human gut^c; has microbe expanded in diseased host^op some Eggerthella lenta^c; occurs in^op some lower digestive tract^c

expansion of Enterobacteriaceae in ERA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000257

is equivalent to: has participant^op some Enterobacteriaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some enthesitis-related juvenile idiopathic arthritis^c)))
has super-classes: ERA human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Enterobacteriaceae^c
has sub-classes: expansion of Klebsiella in ERA human gut^c, expansion of Salmonella in ERA human gut^c

expansion of Enterobacteriaceae in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000349

https://www.ncbi.nlm.nih.gov/pubmed/25104642

is equivalent to: has participant^op some Enterobacteriaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Proteobacteria in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Enterobacteriaceae^c
has sub-classes: expansion of C. rodentium in colorectal cancer human gut^c, expansion of C.farmeri in colorectal cancer human gut^c, expansion of Escherichia in colorectal cancer human gut^c, expansion of K. pneumoniae in colorectal cancer human gut^c, expansion of Salmonella in colorectal cancer human gut^c, expansion of Shigella in colorectal cancer human gut^c

expansion of Enterococcaceae in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000399

https://www.ncbi.nlm.nih.gov/pubmed/23954159

is equivalent to: has participant^op some Enterococcaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Enterococcaceae^c
has sub-classes: expansion of E. faecalis in colorectal cancer human gut^c

expansion of Enterococcaceae in ERA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000258

is equivalent to: has participant^op some Enterococcaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some enthesitis-related juvenile idiopathic arthritis^c)))
has super-classes: ERA human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Enterococcaceae^c
has sub-classes: expansion of Enterococcus in ERA human gut^c

expansion of Enterococcus in ERA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000260

is equivalent to: has participant^op some Enterococcus^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some enthesitis-related juvenile idiopathic arthritis^c)))
has super-classes: expansion of Enterococcaceae in ERA human gut^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Enterococcus^c

expansion of Erysipelatoclostridium in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000129

is equivalent to: has participant^op some Erysipelatoclostridium^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: gout human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Erysipelatoclostridium^c

expansion of Erysipelotrichaceae in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000374

https://www.ncbi.nlm.nih.gov/pubmed/23397545

is equivalent to: has participant^op some Erysipelotrichaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Erysipelotrichaceae^c
has sub-classes: expansion of C. adipataccumulans in colorectal cancer human gut^c, expansion of Solobacterium in colorectal cancer human gut^c

expansion of Escherichia coli EPEC 32/73 in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000130

is equivalent to: has participant^op some Escherichia coli EPEC 32/73^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: gout human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Escherichia coli EPEC 32/73^c; occurs in^op some lower digestive tract^c

expansion of Escherichia coli in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000096

is equivalent to: has participant^op some Escherichia coli^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Escherichia coli^c; occurs in^op some lower digestive tract^c

expansion of Escherichia in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000395

https://www.ncbi.nlm.nih.gov/pubmed/25758642

is equivalent to: has participant^op some Escherichia^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Enterobacteriaceae in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Escherichia^c
has sub-classes: expansion of E. coli B in colorectal cancer human gut^c, expansion of E. coli NC101 in colorectal cancer human gut^c

expansion of Eubacterium in SLE human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000228

is equivalent to: has participant^op some Eubacterium^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: SLE human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Eubacterium^c; occurs in^op some lower digestive tract^c

expansion of F. hwasookii in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000419

https://www.ncbi.nlm.nih.gov/pubmed/28912574

is equivalent to: has participant^op some Fusobacterium hwasookii^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Fusobacterium in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Fusobacterium hwasookii^c

expansion of F. nucleatum in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000416

https://www.ncbi.nlm.nih.gov/pubmed/25751261

is equivalent to: has participant^op some Fusobacterium nucleatum^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Fusobacterium in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Fusobacterium nucleatum^c
has sub-classes: expansion of F. nucleatum subsp. animalis in colorectal cancer human gut^c, expansion of F. nucleatum subsp. nucleatum in colorectal cancer human gut^c, expansion of F. nucleatum subsp. polymorphum in colorectal cancer human gut^c, expansion of F. nucleatum subsp. vincentii in colorectal cancer human gut^c

expansion of F. nucleatum subsp. animalis in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000457

is equivalent to: has participant^op some Fusobacterium nucleatum subsp. animalis^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of F. nucleatum in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Fusobacterium nucleatum subsp. animalis^c

expansion of F. nucleatum subsp. nucleatum in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000454

is equivalent to: has participant^op some Fusobacterium nucleatum subsp. nucleatum^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of F. nucleatum in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Fusobacterium nucleatum subsp. nucleatum^c

expansion of F. nucleatum subsp. polymorphum in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000455

is equivalent to: has participant^op some Fusobacterium nucleatum subsp. polymorphum^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of F. nucleatum in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Fusobacterium nucleatum subsp. polymorphum^c

expansion of F. nucleatum subsp. vincentii in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000456

is equivalent to: has participant^op some Fusobacterium nucleatum subsp. vincentii^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of F. nucleatum in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Fusobacterium nucleatum subsp. vincentii^c

expansion of Filifactor in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000293

https://www.ncbi.nlm.nih.gov/pubmed/26408641

is equivalent to: has participant^op some Filifactor^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Peptostreptococcaceae in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Filifactor^c

expansion of Firmicutes in PsA human skin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000163

https://www.ncbi.nlm.nih.gov/pubmed/21407241 /

is equivalent to: has participant^op some Firmicutes^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some zone of skin^c and (part of^op some Homo sapiens^c and (has disease^op some psoriatic arthritis^c)))
has super-classes: PsA human zone of skin microbiome interaction^c; has microbe expanded in diseased host^op some Firmicutes^c; occurs in^op some zone of skin^c
has sub-classes: expansion of Streptococcus in PsA human skin^c

expansion of Flavonifractor in SLE human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000229

is equivalent to: has participant^op some Flavonifractor^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: SLE human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Flavonifractor^c; occurs in^op some lower digestive tract^c

expansion of Fretibacterium fastidiosum in SLE human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000241

is equivalent to: has participant^op some Fretibacterium fastidiosum^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: SLE human oral cavity microbiome interaction^c; has microbe expanded in diseased host^op some Fretibacterium fastidiosum^c; occurs in^op some oral cavity^c

expansion of Fusobacteria in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000285

is equivalent to: has participant^op some Fusobacteria^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Fusobacteria^c
has sub-classes: expansion of Fusobacteriaceae in colorectal cancer human gut^c, expansion of Leptotrichia in colorectal cancer human gut^c, expansion of Streptobacillus in colorectal cancer human gut^c

expansion of Fusobacteriaceae in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000368

https://www.ncbi.nlm.nih.gov/pubmed/ 23397545

is equivalent to: has participant^op some Fusobacteriaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Fusobacteria in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Fusobacteriaceae^c
has sub-classes: expansion of Fusobacterium in colorectal cancer human gut^c

expansion of Fusobacterium in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000289

https://www.ncbi.nlm.nih.gov/pubmed/18644884

is equivalent to: has participant^op some Fusobacterium^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Fusobacteriaceae in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Fusobacterium^c
has sub-classes: expansion of F. hwasookii in colorectal cancer human gut^c, expansion of F. nucleatum in colorectal cancer human gut^c, expansion of Fusobacterium sp. in colorectal cancer human gut^c

expansion of Fusobacterium in SLE human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000242

is equivalent to: has participant^op some Fusobacterium^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: SLE human oral cavity microbiome interaction^c; occurs in^op some oral cavity^c; has microbe expanded in diseased host^op some Fusobacterium^c

expansion of Fusobacterium sp. in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000057

is equivalent to: has participant^op some Fusobacterium sp.^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Fusobacterium in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Fusobacterium sp.^c

expansion of Gordonibacter pamelaeae in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000037

is equivalent to: has participant^op some Gordonibacter pamelaeae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: expansion of Actinobacteria<phylum> in RA human gut^c; has microbe expanded in diseased host^op some Gordonibacter pamelaeae^c; occurs in^op some lower digestive tract^c

expansion of H. ducreyi in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000434

is equivalent to: has participant^op some [Haemophilus] ducreyi^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Pasteurellaceae in colorectal cancer human gut^c; has microbe expanded in diseased host^op some [Haemophilus] ducreyi^c

expansion of H. hepaticus in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000415

https://www.ncbi.nlm.nih.gov/pubmed/20944559

is equivalent to: has participant^op some Helicobacter hepaticus^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Helicobacter in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Helicobacter hepaticus^c

expansion of H. pylori in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000414

https://www.ncbi.nlm.nih.gov/pubmed/24164483

is equivalent to: has participant^op some Helicobacter pylori^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Helicobacter in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Helicobacter pylori^c

expansion of Helicobacter in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000411

https://www.ncbi.nlm.nih.gov/pubmed/22009989

is equivalent to: has participant^op some Helicobacter^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Proteobacteria in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Helicobacter^c
has sub-classes: expansion of H. hepaticus in colorectal cancer human gut^c, expansion of H. pylori in colorectal cancer human gut^c

expansion of Holdemania in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000140

is equivalent to: has participant^op some Holdemania^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: gout human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Holdemania^c; occurs in^op some lower digestive tract^c

expansion of K. pneumoniae in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000409

https://www.ncbi.nlm.nih.gov/pubmed/22009989

is equivalent to: has participant^op some Klebsiella pneumoniae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Enterobacteriaceae in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Klebsiella pneumoniae^c

expansion of Klebsiella in ERA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000261

is equivalent to: has participant^op some Klebsiella^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some enthesitis-related juvenile idiopathic arthritis^c)))
has super-classes: expansion of Enterobacteriaceae in ERA human gut^c; has microbe expanded in diseased host^op some Klebsiella^c; occurs in^op some lower digestive tract^c

expansion of Klebsiella in SLE human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000068

is equivalent to: has participant^op some Klebsiella^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: SLE human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Klebsiella^c

expansion of Klebsiella pneumoniae in AS human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000105

is equivalent to: has participant^op some Klebsiella pneumoniae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some ankylosing spondylitis^c)))
has super-classes: AS human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Klebsiella pneumoniae^c; occurs in^op some lower digestive tract^c

expansion of Klebsiella pneumoniae in AS human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000107

is equivalent to: has participant^op some Klebsiella pneumoniae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some ankylosing spondylitis^c)))
has super-classes: AS human oral cavity microbiome interaction^c; occurs in^op some oral cavity^c; has microbe expanded in diseased host^op some Klebsiella pneumoniae^c

expansion of L. bacterium in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000387

https://www.ncbi.nlm.nih.gov/pubmed/25758642

is equivalent to: has participant^op some Lachnospiraceae bacterium^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Clostridia in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Lachnospiraceae bacterium^c

expansion of Lachnospiraceae bacterium in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000459

https://www.ncbi.nlm.nih.gov/pubmed/26214836

is equivalent to: has participant^op some Lachnospiraceae bacterium^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: expansion of Clostridia in RA human gut^c; has microbe expanded in diseased host^op some Lachnospiraceae bacterium^c

expansion of Lachnospiraceae in AS human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000101

is equivalent to: has participant^op some Lachnospiraceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some ankylosing spondylitis^c)))
has super-classes: AS human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Lachnospiraceae^c; occurs in^op some lower digestive tract^c

expansion of Lachnospiraceae in SLE mouse gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000198

is equivalent to: has participant^op some Lachnospiraceae^c and ((part of^op some Mus musculus^c and (has disposition^op some systemic lupus erythematosus^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: expansion of Clostridiales in SLE mouse gut^c; has participant^op some Lachnospiraceae^c and ((part of^op some Mus musculus^c and (has disposition^op some systemic lupus erythematosus^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)

expansion of Lactobacillus acidophilus in arthritis rat gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000189

is equivalent to: has participant^op some Lactobacillus acidophilus^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: expansion of Lactobacillus in arthritis rat gut^c; has participant^op some Lactobacillus acidophilus^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)

expansion of Lactobacillus casei in arthritis rat gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000186

is equivalent to: has participant^op some Lactobacillus casei^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: expansion of Lactobacillus in arthritis rat gut^c; has participant^op some Lactobacillus casei^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)

expansion of Lactobacillus fermentum in arthritis rat gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000187

is equivalent to: has participant^op some Lactobacillus fermentum^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: expansion of Lactobacillus in arthritis rat gut^c; has participant^op some Lactobacillus fermentum^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)

expansion of Lactobacillus in arthritis rat gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000191

is equivalent to: has participant^op some Lactobacillus^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: arthritis rat-gut microbiome interaction^c; has participant^op some Lactobacillus^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has sub-classes: expansion of Lactobacillus acidophilus in arthritis rat gut^c, expansion of Lactobacillus casei in arthritis rat gut^c, expansion of Lactobacillus fermentum in arthritis rat gut^c, expansion of Lactobacillus murinus in arthritis rat gut^c

expansion of Lactobacillus murinus in arthritis rat gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000188

is equivalent to: has participant^op some Lactobacillus murinus^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: expansion of Lactobacillus in arthritis rat gut^c; has participant^op some Lactobacillus murinus^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)

expansion of Lactobacillus salivarius in RA human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000069

is equivalent to: has participant^op some Lactobacillus salivarius^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human oral cavity microbiome interaction^c; has microbe expanded in diseased host^op some Lactobacillus salivarius^c; occurs in^op some oral cavity^c

expansion of Lactobacillus sp in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000049

is equivalent to: has participant^op some Lactobacillus sp.^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Lactobacillus sp.^c; occurs in^op some lower digestive tract^c

expansion of Leptotrichia in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000292

https://www.ncbi.nlm.nih.gov/pubmed/26408641

is equivalent to: has participant^op some Leptotrichia^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Fusobacteria in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Leptotrichia^c

expansion of Leptotrichia sp. in RA human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000179

is equivalent to: has participant^op some Leptotrichia sp.^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human oral cavity microbiome interaction^c; occurs in^op some oral cavity^c; has microbe expanded in diseased host^op some Leptotrichia sp.^c

expansion of M. avium in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000431

https://www.ncbi.nlm.nih.gov/pubmed/24334760

is equivalent to: has participant^op some Mycobacterium avium^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Mycobacterium in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Mycobacterium avium^c

expansion of Malassezia furfur in PsA human skin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000278

https://www.ncbi.nlm.nih.gov/pubmed/14675283/

is equivalent to: has participant^op some Malassezia furfur^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some zone of skin^c and (part of^op some Homo sapiens^c and (has disease^op some psoriatic arthritis^c)))
has super-classes: PsA human zone of skin microbiome interaction^c; occurs in^op some zone of skin^c; has microbe expanded in diseased host^op some Malassezia furfur^c

expansion of Malassezia in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000291

https://www.ncbi.nlm.nih.gov/pubmed/26408641

is equivalent to: has participant^op some Malassezia^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Basidiomycota in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Malassezia^c

expansion of Methylobacterium in RA human respiratory airway^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000220

is equivalent to: has participant^op some Methylobacterium^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some respiratory airway^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human respiratory airway microbiome interaction^c; occurs in^op some respiratory airway^c; has microbe expanded in diseased host^op some Methylobacterium^c

expansion of Microbacterium in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000443

is equivalent to: has participant^op some Microbacterium^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Microbacterium^c

expansion of Micrococcus in RA human respiratory airway^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000219

is equivalent to: has participant^op some Micrococcus^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some respiratory airway^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human respiratory airway microbiome interaction^c; occurs in^op some respiratory airway^c; has microbe expanded in diseased host^op some Micrococcus^c

expansion of Mogibacterium in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000373

https://www.ncbi.nlm.nih.gov/pubmed/ 22761885

is equivalent to: has participant^op some Mogibacterium^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Clostridia in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Mogibacterium^c

expansion of Moniliophthora in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000298

https://www.ncbi.nlm.nih.gov/pubmed/26408641

is equivalent to: has participant^op some Moniliophthora^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Basidiomycota in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Moniliophthora^c

expansion of Mycobacterium in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000405

https://www.ncbi.nlm.nih.gov/pubmed/22687960

is equivalent to: has participant^op some Mycobacterium^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Mycobacterium^c
has sub-classes: expansion of M. avium in colorectal cancer human gut^c

expansion of Natronobacillus in diarrheal patient gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000221

is equivalent to: has microbe expanded in diseased host^op some Natronobacillus^c and ((part of^op some Homo sapiens^c and (has disease^op some diarrhea^c)) and (located in^op some lower digestive tract^c))
has super-classes: diarrheal patient-gut microbiome interaction^c; has microbe depleted in diseased host^op some Natronobacillus^c

expansion of Negativicutes in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000120

is equivalent to: has participant^op some Negativicutes^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: gout human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Negativicutes^c; occurs in^op some lower digestive tract^c
has sub-classes: expansion of Selenomonadales in gout human gut^c

expansion of Nocardiaceae in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000250

is equivalent to: has participant^op some Nocardiaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: expansion of Corynebacteriales in gout human gut^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Nocardiaceae^c
has sub-classes: expansion of Rhodococcus in gout human gut^c

expansion of Odoribacter in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000334

https://www.ncbi.nlm.nih.gov/pubmed/24194538

is equivalent to: has participant^op some Odoribacter^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Bacteroidales in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Odoribacter^c

expansion of P. anaerobius in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000417

https://www.ncbi.nlm.nih.gov/pubmed/28126350

is equivalent to: has participant^op some Peptostreptococcus anaerobius^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Peptostreptococcusi in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Peptostreptococcus anaerobius^c

expansion of P. gingivalis in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000420

https://www.ncbi.nlm.nih.gov/pubmed/28912574

is equivalent to: has participant^op some Porphyromonas gingivalis^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Porphyromonas in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Porphyromonas gingivalis^c

expansion of P. micra in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000276

is equivalent to: has participant^op some Parvimonas micra^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Parvimonas in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Parvimonas micra^c

expansion of P. mirabilis in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000408

https://www.ncbi.nlm.nih.gov/pubmed/22687961

is equivalent to: has participant^op some Proteus mirabilis^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Proteobacteria in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Proteus mirabilis^c

expansion of P. stomatis in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000424

https://www.ncbi.nlm.nih.gov/pubmed/28912574

is equivalent to: has participant^op some Peptostreptococcus stomatis^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Peptostreptococcusi in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Peptostreptococcus stomatis^c

expansion of Parabacteroides in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000340

https://www.ncbi.nlm.nih.gov/pubmed/24967088

is equivalent to: has participant^op some Parabacteroides^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Bacteroidales in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Parabacteroides^c

expansion of Paraprevotella in AS rat gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000175

is equivalent to: has participant^op some Paraprevotella^c and ((part of^op some Rattus^c and (has disposition^op some ankylosing spondylitis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: AS rat-gut microbiome interaction^c; has participant^op some Paraprevotella^c and ((part of^op some Rattus^c and (has disposition^op some ankylosing spondylitis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)

expansion of Paraprevotella in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000134

is equivalent to: has participant^op some Paraprevotella^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: expansion of Bacteroidales in gout human gut^c; has microbe expanded in diseased host^op some Paraprevotella^c; occurs in^op some lower digestive tract^c

expansion of Parasporobacterium in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000133

is equivalent to: has participant^op some Parasporobacterium^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: gout human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Parasporobacterium^c; occurs in^op some lower digestive tract^c

expansion of Parvimonas in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000287

is equivalent to: has participant^op some Parvimonas^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Parvimonas^c
has sub-classes: expansion of P. micra in colorectal cancer human gut^c

expansion of Pasteurellaceae in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000371

https://www.ncbi.nlm.nih.gov/pubmed/ 23397545

is equivalent to: has participant^op some Pasteurellaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Proteobacteria in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Pasteurellaceae^c
has sub-classes: expansion of A. actinomycetemcomitans in colorectal cancer human gut^c, expansion of H. ducreyi in colorectal cancer human gut^c

expansion of Peptostreptococcaceae in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000369

https://www.ncbi.nlm.nih.gov/pubmed/23397545

is equivalent to: has participant^op some Peptostreptococcaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Clostridia in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Peptostreptococcaceae^c
has sub-classes: expansion of C. hiranonis in colorectal cancer human gut^c, expansion of Filifactor in colorectal cancer human gut^c, expansion of Peptostreptococcusi in colorectal cancer human gut^c

expansion of Peptostreptococcusi in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000288

is equivalent to: has participant^op some Peptostreptococcus^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Peptostreptococcaceae in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Peptostreptococcus^c
has sub-classes: expansion of P. anaerobius in colorectal cancer human gut^c, expansion of P. stomatis in colorectal cancer human gut^c

expansion of Phascolarctobacterium in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000328

https://www.ncbi.nlm.nih.gov/pubmed/ 23940645

is equivalent to: has participant^op some Phascolarctobacterium^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Phascolarctobacterium^c

expansion of Porphyromonadaceae in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000118

is equivalent to: has participant^op some Porphyromonadaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: expansion of Bacteroidales in gout human gut^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Porphyromonadaceae^c

expansion of Porphyromonas gingivalis in AS human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000171

is equivalent to: has participant^op some Porphyromonas gingivalis^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some ankylosing spondylitis^c)))
has super-classes: AS human oral cavity microbiome interaction^c; occurs in^op some oral cavity^c; has microbe expanded in diseased host^op some Porphyromonas gingivalis^c

expansion of Porphyromonas gingivalis in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000061

is equivalent to: has participant^op some Porphyromonas gingivalis^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Porphyromonas gingivalis^c; occurs in^op some lower digestive tract^c

expansion of Porphyromonas gingivalis in RA human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000064

is equivalent to: has participant^op some Porphyromonas gingivalis^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human oral cavity microbiome interaction^c; has microbe expanded in diseased host^op some Porphyromonas gingivalis^c; occurs in^op some oral cavity^c

expansion of Porphyromonas in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000372

https://www.ncbi.nlm.nih.gov/pubmed/23397545

is equivalent to: has participant^op some Porphyromonas^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Bacteroidales in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Porphyromonas^c
has sub-classes: expansion of P. gingivalis in colorectal cancer human gut^c

expansion of Porphyromonas macacae in AS human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000225

is equivalent to: has microbe expanded in diseased host^op some Porphyromonas macacae^c and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some ankylosing spondylitis^c)))
has super-classes: AS human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Porphyromonas macacae^c; occurs in^op some lower digestive tract^c

expansion of Prevotella in SLE human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000111

is equivalent to: has participant^op some Prevotella^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: SLE human oral cavity microbiome interaction^c; has microbe expanded in diseased host^op some Prevotella^c; occurs in^op some oral cavity^c
has sub-classes: expansion of Prevotella oulorum in SLE human oral cavity^c

expansion of Prevotella copri in arthritis mouse gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000204

is equivalent to: has participant^op some Prevotella copri^c and ((part of^op some Mus musculus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: arthritis mouse-gut microbiome interaction^c; has participant^op some Prevotella copri^c and ((part of^op some Mus musculus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)

expansion of Prevotella copri in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000091

is equivalent to: has participant^op some Prevotella copri^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: expansion of Prevotellaceae in RA human gut^c; segregation of Prevotella or Bacteroides dominance in RA human gut^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Prevotella copri^c

expansion of Prevotella in AS rat gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000176

is equivalent to: has participant^op some Prevotella^c and ((part of^op some Rattus^c and (has disposition^op some ankylosing spondylitis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: AS rat-gut microbiome interaction^c; has participant^op some Prevotella^c and ((part of^op some Rattus^c and (has disposition^op some ankylosing spondylitis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)

expansion of Prevotella in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000422

https://www.ncbi.nlm.nih.gov/pubmed/28912574

is equivalent to: has participant^op some Prevotella^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Prevotellaceae in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Prevotella^c

expansion of Prevotella in ERA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000262

is equivalent to: has participant^op some Prevotella^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some enthesitis-related juvenile idiopathic arthritis^c)))
has super-classes: expansion of Prevotellaceae in RA human gut^c; segregation of Prevotella or Bacteroides dominance in RA human gut^c; ERA human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Prevotella^c; occurs in^op some lower digestive tract^c

expansion of Prevotella in RA human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000178

is equivalent to: has participant^op some Prevotella^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human oral cavity microbiome interaction^c; has microbe expanded in diseased host^op some Prevotella^c; occurs in^op some oral cavity^c
has sub-classes: expansion of Prevotella intermedia in RA human oral cavity^c

expansion of Prevotella in SLE human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000072

is equivalent to: has participant^op some Prevotella^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: expansion of Bacteroidales in SLE human gut^c; has microbe expanded in diseased host^op some Prevotella^c; occurs in^op some lower digestive tract^c

expansion of Prevotella intermedia in AS human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000108

is equivalent to: has participant^op some Prevotella intermedia^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some ankylosing spondylitis^c)))
has super-classes: AS human oral cavity microbiome interaction^c; has microbe expanded in diseased host^op some Prevotella intermedia^c; occurs in^op some oral cavity^c

expansion of Prevotella intermedia in RA human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000063

is equivalent to: has participant^op some Prevotella intermedia^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: expansion of Prevotella in RA human oral cavity^c; occurs in^op some oral cavity^c; has microbe expanded in diseased host^op some Prevotella intermedia^c

expansion of Prevotella oulorum in SLE human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000240

is equivalent to: has participant^op some Prevotella oulorum^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: expansion of Prevotella in SLE human oral cavity^c; occurs in^op some oral cavity^c; has microbe expanded in diseased host^op some Prevotella oulorum^c

expansion of Prevotellaceae in AS human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000103

is equivalent to: has participant^op some Prevotellaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some ankylosing spondylitis^c)))
has super-classes: AS human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Prevotellaceae^c; occurs in^op some lower digestive tract^c

expansion of Prevotellaceae in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000375

https://www.ncbi.nlm.nih.gov/pubmed/ 23397545

is equivalent to: has participant^op some Prevotellaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Bacteroidales in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Prevotellaceae^c
has sub-classes: expansion of Prevotella in colorectal cancer human gut^c

expansion of Prevotellaceae in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000038

is equivalent to: has participant^op some Prevotellaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Prevotellaceae^c; occurs in^op some lower digestive tract^c
has sub-classes: expansion of Prevotella copri in RA human gut^c, expansion of Prevotella in ERA human gut^c

expansion of Propionibacterium acnes 17B in arthritis rat gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000185

is equivalent to: has participant^op some Cutibacterium acnes 17B^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: arthritis rat-gut microbiome interaction^c; has participant^op some Cutibacterium acnes 17B^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)

expansion of Proteobacteria in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000410

https://www.ncbi.nlm.nih.gov/pubmed/20740058

is equivalent to: has participant^op some Proteobacteria^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Proteobacteria^c
has sub-classes: expansion of Acidovorax in colorectal cancer human gut^c, expansion of Acinetobacter in colorectal cancer human gut^c, expansion of Beggiatoa in colorectal cancer human gut^c, expansion of Bilophila in colorectal cancer human gut^c, expansion of C. Portiera in colorectal cancer human gut^c, expansion of Campylobacter in colorectal cancer human gut^c, expansion of Crenothrix in colorectal cancer human gut^c, expansion of Enterobacteriaceae in colorectal cancer human gut^c, expansion of Helicobacter in colorectal cancer human gut^c, expansion of P. mirabilis in colorectal cancer human gut^c, expansion of Pasteurellaceae in colorectal cancer human gut^c, expansion of Providencia in colorectal cancer human gut^c, expansion of Pseudomonas in colorectal cancer human gut^c, expansion of Sulfurovum in colorectal cancer human gut^c

expansion of Proteus mirabilis in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000065

is equivalent to: has participant^op some Proteus mirabilis^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Proteus mirabilis^c; occurs in^op some lower digestive tract^c

expansion of Proteus mirabilis in RA human urine^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000385

is equivalent to: has participant^op some Proteus mirabilis^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some urine^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human-urine microbiome interaction^c; has microbe expanded in diseased host^op some Proteus mirabilis^c; occurs in^op some urine^c

expansion of Providencia in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000365

https://www.ncbi.nlm.nih.gov/pubmed/26170900

is equivalent to: has participant^op some Providencia^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Proteobacteria in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Providencia^c

expansion of Pseudobutyrivibrio in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000136

is equivalent to: has participant^op some Pseudobutyrivibrio^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: gout human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Pseudobutyrivibrio^c; occurs in^op some lower digestive tract^c

expansion of Pseudomonas in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000439

is equivalent to: has participant^op some Pseudomonas^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Proteobacteria in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Pseudomonas^c

expansion of Pseudonocardia in RA human respiratory airway^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000218

is equivalent to: has participant^op some Pseudonocardia^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some respiratory airway^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human respiratory airway microbiome interaction^c; occurs in^op some respiratory airway^c; has microbe expanded in diseased host^op some Pseudonocardia^c

expansion of Rhodococcus in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000251

is equivalent to: has participant^op some Rhodococcus^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: expansion of Nocardiaceae in gout human gut^c; has microbe expanded in diseased host^op some Rhodococcus^c; occurs in^op some lower digestive tract^c

expansion of Rhodococcus in SLE human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000230

is equivalent to: has participant^op some Rhodococcus^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: SLE human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Rhodococcus^c

expansion of Rikenellaceae in AS human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000224

is equivalent to: has participant^op some Rikenellaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some ankylosing spondylitis^c)))
has super-classes: AS human-gut microbiome interaction^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Rikenellaceae^c

expansion of Roseburia in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000331

https://www.ncbi.nlm.nih.gov/pubmed/23497613

is equivalent to: has participant^op some Roseburia^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Clostridia in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Roseburia^c

expansion of Ruminococcaceae in AS human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000100

is equivalent to: has participant^op some Ruminococcaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some ankylosing spondylitis^c)))
has super-classes: AS human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Ruminococcaceae^c; occurs in^op some lower digestive tract^c

expansion of Ruminococcaceae in SLE mouse gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000199

is equivalent to: has participant^op some Ruminococcaceae^c and ((part of^op some Mus musculus^c and (has disposition^op some systemic lupus erythematosus^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: expansion of Clostridiales in SLE mouse gut^c; has participant^op some Ruminococcaceae^c and ((part of^op some Mus musculus^c and (has disposition^op some systemic lupus erythematosus^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)

expansion of Ruminococcus lactaris in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000050

is equivalent to: has participant^op some Ruminococcus lactaris^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: expansion of Clostridia in RA human gut^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Ruminococcus lactaris^c

expansion of S. dysenteriae in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000435

is equivalent to: has participant^op some Shigella dysenteriae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Shigella in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Shigella dysenteriae^c

expansion of S. enterica in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000437

is equivalent to: has participant^op some Salmonella enterica^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Salmonella in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Salmonella enterica^c

expansion of S. equinus in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000398

https://www.ncbi.nlm.nih.gov/pubmed/19226366

is equivalent to: has participant^op some Streptococcus equinus^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Streptococcaceae in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Streptococcus equinus^c

expansion of S. gallolyticus in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000451

is equivalent to: has participant^op some Streptococcus gallolyticus^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Streptococcaceae in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Streptococcus gallolyticus^c

expansion of S. moorei in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000283

is equivalent to: has participant^op some Solobacterium moorei^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Solobacterium in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Solobacterium moorei^c

expansion of Salmonella in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000401

https://www.ncbi.nlm.nih.gov/pubmed/22009989

is equivalent to: has participant^op some Salmonella^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Enterobacteriaceae in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Salmonella^c
has sub-classes: expansion of S. enterica in colorectal cancer human gut^c

expansion of Salmonella in ERA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000267

is equivalent to: has participant^op some Salmonella^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some enthesitis-related juvenile idiopathic arthritis^c)))
has super-classes: expansion of Enterobacteriaceae in ERA human gut^c; has microbe expanded in diseased host^op some Salmonella^c; occurs in^op some lower digestive tract^c

expansion of Salmonella in reactive arthritis rat gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000282

is equivalent to: has participant^op some Salmonella^c and ((part of^op some Rattus^c and (has disposition^op some reactive arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: reactive arthritis rat-gut microbiome interaction^c; has participant^op some Salmonella^c and ((part of^op some Rattus^c and (has disposition^op some juvenile rheumatoid arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)

expansion of Selenomonadales in gout human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000253

is equivalent to: has participant^op some Selenomonadales^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some gout^c)))
has super-classes: expansion of Negativicutes in gout human gut^c; occurs in^op some lower digestive tract^c; has microbe expanded in diseased host^op some Selenomonadales^c

expansion of Selenomonas in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000421

https://www.ncbi.nlm.nih.gov/pubmed/28912574

is equivalent to: has participant^op some Selenomonas^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Selenomonas^c

expansion of Selenomonas in SLE human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000243

is equivalent to: has participant^op some Selenomonas^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: SLE human oral cavity microbiome interaction^c; occurs in^op some oral cavity^c; has microbe expanded in diseased host^op some Selenomonas^c

expansion of Shigella in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000402

https://www.ncbi.nlm.nih.gov/pubmed/22009989

is equivalent to: has participant^op some Shigella^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Enterobacteriaceae in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Shigella^c
has sub-classes: expansion of S. dysenteriae in colorectal cancer human gut^c

expansion of Slackia in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000299

https://www.ncbi.nlm.nih.gov/pubmed/ 21647227

is equivalent to: has participant^op some Slackia^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Slackia^c

expansion of Solobacterium in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000295

https://www.ncbi.nlm.nih.gov/pubmed/26408641

is equivalent to: has participant^op some Solobacterium^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Erysipelotrichaceae in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Solobacterium^c
has sub-classes: expansion of S. moorei in colorectal cancer human gut^c, expansion of Solobacterium sp. S4-A19 in colorectal cancer human gut^c

expansion of Solobacterium sp. S4-A19 in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000426

https://www.ncbi.nlm.nih.gov/pubmed/28827587

is equivalent to: has participant^op some Solobacterium sp. S4-A19^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Solobacterium in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Solobacterium sp. S4-A19^c

expansion of Streptobacillus in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000297

https://www.ncbi.nlm.nih.gov/pubmed/26408641

is equivalent to: has participant^op some Streptobacillus^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Fusobacteria in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Streptobacillus^c

expansion of Streptococcaceae in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000367

https://www.ncbi.nlm.nih.gov/pubmed/ 23397545

is equivalent to: has participant^op some Streptococcaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Streptococcaceae^c
has sub-classes: expansion of S. equinus in colorectal cancer human gut^c, expansion of S. gallolyticus in colorectal cancer human gut^c

expansion of Streptococcaceae in SLE mouse gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000201

is equivalent to: has participant^op some Streptococcaceae^c and ((part of^op some Mus musculus^c and (has disposition^op some systemic lupus erythematosus^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: SLE mouse-gut microbiome interaction^c; has participant^op some Streptococcaceae^c and ((part of^op some Mus musculus^c and (has disposition^op some systemic lupus erythematosus^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)

expansion of Streptococcus in PsA human skin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000159

is equivalent to: has participant^op some Streptococcus^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some zone of skin^c and (part of^op some Homo sapiens^c and (has disease^op some psoriatic arthritis^c)))
has super-classes: expansion of Firmicutes in PsA human skin^c; occurs in^op some zone of skin^c; has microbe expanded in diseased host^op some Streptococcus^c

expansion of Streptococcus pyogenes in arthritis rat gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000202

is equivalent to: has participant^op some Streptococcus pyogenes^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: arthritis rat-gut microbiome interaction^c; has participant^op some Streptococcus pyogenes^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)

expansion of Sulfurovum in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000296

https://www.ncbi.nlm.nih.gov/pubmed/26408641

is equivalent to: has participant^op some Sulfurovum^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: expansion of Proteobacteria in colorectal cancer human gut^c; has microbe expanded in diseased host^op some Sulfurovum^c

expansion of Tannerella forsythia in AS human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000109

is equivalent to: has participant^op some Tannerella forsythia^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some ankylosing spondylitis^c)))
has super-classes: AS human oral cavity microbiome interaction^c; occurs in^op some oral cavity^c; has microbe expanded in diseased host^op some Tannerella forsythia^c

expansion of Tannerella forsythia in RA human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000180

is equivalent to: has participant^op some Tannerella forsythia^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human oral cavity microbiome interaction^c; has microbe expanded in diseased host^op some Tannerella forsythia^c; occurs in^op some oral cavity^c

expansion of Treponema denticola in AS human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000223

is equivalent to: has participant^op some Treponema denticola^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some ankylosing spondylitis^c)))
has super-classes: AS human oral cavity microbiome interaction^c; occurs in^op some oral cavity^c; has microbe expanded in diseased host^op some Treponema denticola^c

expansion of Treponema in SLE human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000244

is equivalent to: has participant^op some Treponema^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some systemic lupus erythematosus^c)))
has super-classes: SLE human oral cavity microbiome interaction^c; has microbe expanded in diseased host^op some Treponema^c; occurs in^op some oral cavity^c

expansion of unclassified Proteobacteria in diarrheal patient gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000355

is equivalent to: has microbe expanded in diseased host^op some unclassified Proteobacteria^c and ((part of^op some Homo sapiens^c and (has disease^op some diarrhea^c)) and (located in^op some lower digestive tract^c))
has super-classes: diarrheal patient-gut microbiome interaction^c; has microbe depleted in diseased host^op some unclassified Proteobacteria^c

expansion of Veillonella in RA human oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000094

is equivalent to: has participant^op some Veillonella^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some oral cavity^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human oral cavity microbiome interaction^c; has microbe expanded in diseased host^op some Veillonella^c; occurs in^op some oral cavity^c

expansion of Veillonellaceae in AS human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000104

is equivalent to: has participant^op some Veillonellaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some ankylosing spondylitis^c)))
has super-classes: AS human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Veillonellaceae^c; occurs in^op some lower digestive tract^c
has sub-classes: expansion of Dialister in AS human gut^c

expansion of Veillonellaceae in colorectal cancer human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000370

https://www.ncbi.nlm.nih.gov/pubmed/ 23397545

is equivalent to: has participant^op some Veillonellaceae^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some colorectal cancer^c)))
has super-classes: colorectal cancer human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Veillonellaceae^c

expansion of Yersinia in ERA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000279

is equivalent to: has participant^op some Yersinia^c and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some enthesitis-related juvenile idiopathic arthritis^c)))
has super-classes: ERA human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Yersinia^c; occurs in^op some lower digestive tract^c

expansion of Yersinia in reactive arthritis rat gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000281

is equivalent to: has participant^op some Yersinia^c and ((part of^op some Rattus^c and (has disposition^op some reactive arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)
has super-classes: reactive arthritis rat-gut microbiome interaction^c; has participant^op some Yersinia^c and ((part of^op some Rattus^c and (has disposition^op some reactive arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some increased organism quantity compared with healthy control^c)

experimentally modified cell in vitro^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000578

has super-classes: cell^c; processed material^c; is_specified_output_of^op some material processing^c
has sub-classes: cultured cell^c

extract^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000423

has super-classes: processed material^c; is_specified_output_of^op some extraction^c
has sub-classes: nucleic acid extract^c

extraction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0302884

has super-classes: material component separation^c; achieves_planned_objective^op some separation into different composition objective^c
has sub-classes: nucleic acid extraction^c

Faecalibacterium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_216851

has super-classes: Ruminococcaceae^c; microbe susceptibly depleted in gut of human with disease^op some rheumatoid arthritis^c
has sub-classes: Faecalibacterium prausnitzii^c

Faecalibacterium prausnitzii^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_853

has super-classes: Faecalibacterium^c

feces^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001988

has super-classes: excreta^c

Filifactor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_44259

has super-classes: Peptostreptococcaceae^c

Firmicutes^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1239

has super-classes: Terrabacteria group^c
has sub-classes: Bacilli^c, Clostridia^c, Erysipelotrichaceae^c, Negativicutes^c, Parvimonas^c

Flavonifractor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_946234

has super-classes: unclassified Clostridiales^c

Fretibacterium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1434006

has super-classes: Bacteria^c
has sub-classes: Fretibacterium fastidiosum^c

Fretibacterium fastidiosum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_651822

has super-classes: Fretibacterium^c

function^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000034

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: disposition^c
has sub-classes: measure function^c
is in domain of: function of^op
is in range of: has function^op

fungal microbiome^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000006

has super-classes: microbiome^c
has sub-classes: fungal microbiome of lung^c, fungal microbiome of mucosal site^c, fungal microbiome of skin^c

fungal microbiome of lung^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000010

has super-classes: fungal microbiome^c

fungal microbiome of mucosal site^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000009

has super-classes: fungal microbiome^c

fungal microbiome of skin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000008

has super-classes: fungal microbiome^c

Fungi^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_4751

has super-classes: Opisthokonta^c
has sub-classes: Dikarya^c

Fusicatenibacter saccharivorans^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1150298

has super-classes: Lachnospiraceae^c

Fusobacteria^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32066

has super-classes: Bacteria^c
has sub-classes: Fusobacteriales^c

Fusobacteriaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_203492

has super-classes: Fusobacteriales^c
has sub-classes: Fusobacterium^c

Fusobacteriales^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_203491

has super-classes: Fusobacteria^c
has sub-classes: Fusobacteriaceae^c, Leptotrichiaceae^c

Fusobacterium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_848

has super-classes: Fusobacteriaceae^c
has sub-classes: Fusobacterium hwasookii^c, Fusobacterium nucleatum^c, Fusobacterium sp.^c

Fusobacterium hwasookii^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1583098

has super-classes: Fusobacterium^c

Fusobacterium nucleatum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_851

has super-classes: Fusobacterium^c
has sub-classes: Fusobacterium nucleatum subsp. animalis^c, Fusobacterium nucleatum subsp. nucleatum^c, Fusobacterium nucleatum subsp. polymorphum^c, Fusobacterium nucleatum subsp. vincentii^c

Fusobacterium nucleatum subsp. animalis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_76859

has super-classes: Fusobacterium nucleatum^c

Fusobacterium nucleatum subsp. nucleatum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_76856

has super-classes: Fusobacterium nucleatum^c

Fusobacterium nucleatum subsp. polymorphum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_76857

has super-classes: Fusobacterium nucleatum^c

Fusobacterium nucleatum subsp. vincentii^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_155615

has super-classes: Fusobacterium nucleatum^c

Fusobacterium sp.^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_68766

has super-classes: Fusobacterium^c

Gallus gallus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9031

has super-classes: Amniota^c

gamma diversity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000473

has super-classes: community species diversity^c

Gammaproteobacteria^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1236

has super-classes: Proteobacteria^c
has sub-classes: Beggiatoa^c, Candidatus Portiera^c, Cardiobacterium^c, Crenothrix^c, Enterobacterales^c, Pasteurellaceae^c, Pseudomonadales^c, Vibrionaceae^c

gastrointestinal system cancer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_3119

has super-classes: organ system cancer^c; gastrointestinal system disease^c
has sub-classes: esophageal cancer^c, hepatobiliary system cancer^c, intestinal cancer^c, stomach cancer^c

gastrointestinal system disease^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_77

has super-classes: disease of anatomical entity^c
has sub-classes: diarrhea^c, gastrointestinal system cancer^c, hepatobiliary disease^c, intestinal disease^c

gene^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGG_0000000002

has super-classes: material entity^c

gene expression^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0010467

has super-classes: biological_process^c

generically dependent continuant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000031

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: continuant^c
has sub-classes: information content entity^c, region^c
is in domain of: is concretized as^op
is in range of: concretizes^op

genome^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGG_0000000001

has super-classes: material entity^c
has sub-classes: microbial genome^c

Gordonibacter pamelaeae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_471189

has super-classes: Eggerthellaceae^c; microbe susceptibly expanded in gut of human with disease^op some rheumatoid arthritis^c

gout^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_13189

has super-classes: arthritis^c

gout human-gut microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000114

has super-classes: human-gut microbiome interaction^c; has participant^op some Homo sapiens^c and (has disease^op some gout^c)
has sub-classes: depletion of Alistipes in gout human gut^c, depletion of Dialister in gout human gut^c, depletion of Lachnospiraceae in gout human gut^c, depletion of Odoribacter in gout human gut^c, depletion of Oscillibacter in gout human gut^c, depletion of Ruminococcaceae in gout human gut^c, depletion of Vibrionaceae in gout human gut^c, expansion of Acetanaerobacterium in gout human gut^c, expansion of Anaerolineales in gout human gut^c, expansion of Anaerotruncus in gout human gut^c, expansion of Bacteroidetes in gout human gut^c, expansion of Chloroflexi in gout human gut^c, expansion of Corynebacteriales in gout human gut^c, expansion of E. coli ETEC TW03439 in gout human gut^c, expansion of Erysipelatoclostridium in gout human gut^c, expansion of Escherichia coli EPEC 32/73 in gout human gut^c, expansion of Holdemania in gout human gut^c, expansion of Negativicutes in gout human gut^c, expansion of Parasporobacterium in gout human gut^c, expansion of Pseudobutyrivibrio in gout human gut^c

habitat^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000739

A habitat's specificity to an ecological population differentiates it from other environment classes.

has super-classes: ecosystem^c

Haemophilus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_724

has super-classes: Pasteurellaceae^c; microbe susceptibly depleted in oral cavity of human with disease^op some rheumatoid arthritis^c
has sub-classes: Haemophilus parainfluenzae^c, Haemophilus sp.^c, [Haemophilus] ducreyi^c

Haemophilus parainfluenzae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_729

has super-classes: Haemophilus^c

Haemophilus sp.^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_740

has super-classes: Haemophilus^c; microbe susceptibly depleted in oral cavity of human with disease^op some rheumatoid arthritis^c; microbe susceptibly depleted in gut of human with disease^op some rheumatoid arthritis^c

Helicobacter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_209

has super-classes: Campylobacterales^c
has sub-classes: Helicobacter hepaticus^c, Helicobacter pylori^c

Helicobacter hepaticus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32025

has super-classes: Helicobacter^c

Helicobacter pylori^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_210

has super-classes: Helicobacter^c

Hepacivirus C^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_11103

has super-classes: Viruses^c

Hepatitis B virus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10407

has super-classes: Viruses^c

hepatobiliary disease^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_3118

has super-classes: gastrointestinal system disease^c
has sub-classes: bile duct cancer^c, liver disease^c

hepatobiliary system cancer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_0080355

has super-classes: gastrointestinal system cancer^c
has sub-classes: bile duct cancer^c, liver cancer^c

hepatocellular carcinoma^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_684

OMIM mapping confirmed by DO. [SN].

has super-classes: liver carcinoma^c

Holdemania^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_61170

has super-classes: Erysipelotrichaceae^c

Homo sapiens^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9606

has super-classes: Euarchontoglires^c

host^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000485

is equivalent to: has role^op some host role^c
has super-classes: organism or virus or viroid^c; organism^c; has role^op some host role^c

host microbiome restoration^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000474

has super-classes: biological_process^c
has sub-classes: host microbiome restoration by treatment^c

host microbiome restoration by antibiotics^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000477

has super-classes: host microbiome restoration by treatment^c

host microbiome restoration by DMARD^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000476

has super-classes: host microbiome restoration by treatment^c

host microbiome restoration by microbiota transplantation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000478

has super-classes: host microbiome restoration by treatment^c

host microbiome restoration by treatment^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000475

has super-classes: host microbiome restoration^c
has sub-classes: host microbiome restoration by DMARD^c, host microbiome restoration by antibiotics^c, host microbiome restoration by microbiota transplantation^c

host role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000725

has super-classes: role^c; inheres in^op some organism^c

host-microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000001

is equivalent to: interaction^c and (has participant^op some microbiome^c) and (has participant^op some host^c)
has super-classes: interaction^c; has participant^op some host^c; has participant^op some microbiome^c; occurs in^op some anatomical entity^c
has sub-classes: human-microbiome interaction^c, interaction between microbiome and host immune system^c, microbiome-cancer interaction^c, microbiome-gut-brain interaction^c, mouse-microbiome interaction^c, rat-microbiome interaction^c
is in domain of: has microbe depleted in diseased host^op, has microbe population size altered in diseased host^op

human gut microbiome^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000020

A human being's gut microbiota contains tens of trillions of microorganisms, including at least 1000 different species of known bacteria with more than 3 million genes (150 times more than human genes). Microbiota can, in total, weigh up to 2 kg. One third of our gut microbiota is common to most people, while two thirds are specific to each one of us. In other words, the microbiota in your intestine is like an individual identity card. URL: http://www.gutmicrobiotaforhealth.com/en/about-gut-microbiota-info/

has super-classes: microbiome in human gastrointestinal system^c

human gut microbiome and Clostridium difficile interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000025

has super-classes: human-gut microbiome interaction^c
has sub-classes: antibiotics reducing colonization resistance against C. difficile in human gut^c, restoring human gut microbiome resistance to C. difficile infection by fecal microbiota transplantation^c

human gut microbiome interaction in bowel syndrome^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000022

has super-classes: human-gut microbiome interaction^c

human gut microbiome interaction in Crohn's disease^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000023

has super-classes: human-gut microbiome interaction^c

Human immunodeficiency virus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_12721

has super-classes: Viruses^c

human microbiome^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000002

has super-classes: microbiome^c; located in^op some Homo sapiens^c
has sub-classes: microbiome in human cutaneous system^c, microbiome in human gastrointestinal system^c, microbiome in human oral^c, microbiome in human respiratory system^c, microbiome in human urogenital system^c

human oral cavity microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000036

has super-classes: human-microbiome interaction^c; occurs in^op some oral cavity^c and (part of^op some Homo sapiens^c)
has sub-classes: AS human oral cavity microbiome interaction^c, PsA human oral cavity microbiome interaction^c, RA human oral cavity microbiome interaction^c, SLE human oral cavity microbiome interaction^c

human respiratory airway microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000077

has super-classes: human-microbiome interaction^c; occurs in^op some respiratory airway^c and (part of^op some Homo sapiens^c)
has sub-classes: RA human respiratory airway microbiome interaction^c

human skin microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000121

has super-classes: human-microbiome interaction^c; occurs in^op some zone of skin^c and (part of^op some Homo sapiens^c)
has sub-classes: PsA human zone of skin microbiome interaction^c

human-gut microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000021

has super-classes: human-microbiome interaction^c; has participant^op some microbiome^c and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c)); occurs in^op some lower digestive tract^c and (part of^op some Homo sapiens^c)
has sub-classes: AS human-gut microbiome interaction^c, ERA human-gut microbiome interaction^c, PsA human-gut microbiome interaction^c, RA human-gut microbiome interaction^c, SLE human-gut microbiome interaction^c, colon cancer human-gut microbiome interaction^c, colorectal cancer human-gut microbiome interaction^c, diarrheal patient-gut microbiome interaction^c, gout human-gut microbiome interaction^c, human gut microbiome and Clostridium difficile interaction^c, human gut microbiome interaction in Crohn's disease^c, human gut microbiome interaction in bowel syndrome^c

human-microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000019

has super-classes: host-microbiome interaction^c; has participant^op some Homo sapiens^c and (has role^op some host role^c)
has sub-classes: human oral cavity microbiome interaction^c, human respiratory airway microbiome interaction^c, human skin microbiome interaction^c, human-gut microbiome interaction^c, human-urine microbiome interaction^c

human-urine microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000344

has super-classes: human-microbiome interaction^c; has participant^op some microbiome^c and (located in^op some urine^c and (part of^op some Homo sapiens^c)); occurs in^op some urine^c and (part of^op some Homo sapiens^c)
has sub-classes: RA human-urine microbiome interaction^c

immaterial entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000141

has super-classes: independent continuant^c
has sub-classes: spatial region^c

immune system disease^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_2914

has super-classes: disease of anatomical entity^c
has sub-classes: autoimmune hypersensitivity disease^c

increased organism quantity compared with healthy control^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000032

has super-classes: quality^c

independent continuant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000004

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: continuant^c
has sub-classes: immaterial entity^c, material entity^c
is in domain of: derives from^op, has disposition^op, has function^op, has role^op, located in^op
is in range of: derives from^op, located in^op, occurs in^op

infection^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IDO_0000586

has super-classes: material entity^c

infection process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_1110021

has super-classes: pathologic process^c; has participant^op some infection^c; realizes^op some disposition to infect an organism^c
has sub-classes: Clostridioides difficile infection^c

inflammatory bowel disease^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_0050589

Xref MGI. OMIM mapping confirmed by DO. [SN].

has super-classes: intestinal disease^c

information content entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000030

has super-classes: generically dependent continuant^c; is about^op some entity^c
has sub-classes: data item^c, datum label^c, directive information entity^c, value specification^c
is in domain of: has value specification^op, is about^op

interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/INO_0000002

has super-classes: process^c
has sub-classes: host-microbiome interaction^c

interaction between microbiome and adaptive immune system^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000012

has super-classes: interaction between microbiome and host immune system^c

interaction between microbiome and host immune system^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000011

has super-classes: host-microbiome interaction^c
has sub-classes: interaction between microbiome and adaptive immune system^c, microbiome-immune-cancer interaction^c

interaction with host^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0051701

has super-classes: interspecies interaction between organisms^c

interspecies interaction between organisms^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044419

has super-classes: multi-organism process^c
has sub-classes: interaction with host^c

intestinal cancer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_10155

has super-classes: gastrointestinal system cancer^c; intestinal disease^c
has sub-classes: large intestine cancer^c

intestinal disease^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_5295

has super-classes: gastrointestinal system disease^c
has sub-classes: inflammatory bowel disease^c, intestinal cancer^c

intestine^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000160

has super-classes: subdivision of digestive tract^c

invisible to unaided eye^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000462

has super-classes: physical object quality^c

juvenile rheumatoid arthritis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_676

Xref MGI.

has super-classes: rheumatoid arthritis^c
has sub-classes: enthesitis-related juvenile idiopathic arthritis^c

Kingella^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32257

has super-classes: Neisseriaceae^c; microbe susceptibly depleted in oral cavity of human with disease^op some rheumatoid arthritis^c

Klebsiella^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_570

has super-classes: Enterobacteriaceae^c
has sub-classes: Klebsiella aerogenes^c, Klebsiella pneumoniae^c

Klebsiella aerogenes^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_548

has super-classes: Klebsiella^c

Klebsiella pneumoniae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_573

has super-classes: Klebsiella^c; microbe susceptibly depleted in gut of human with disease^op some rheumatoid arthritis^c

Kluyvera^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_579

has super-classes: Enterobacteriaceae^c

Lachnobacterium bovis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_140626

has super-classes: Lachnospiraceae^c

Lachnoclostridium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1506553

has super-classes: Lachnospiraceae^c
has sub-classes: [Clostridium] asparagiforme^c, [Clostridium] clostridioforme^c, [Clostridium] hylemonae^c, [Clostridium] scindens^c

Lachnospira pectinoschiza^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_28052

has super-classes: Lachnospiraceae^c

Lachnospiraceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186803

has super-classes: Clostridiales^c
has sub-classes: Blautia^c, Coprococcus^c, Dorea formicigenerans^c, Fusicatenibacter saccharivorans^c, Lachnobacterium bovis^c, Lachnoclostridium^c, Lachnospira pectinoschiza^c, Lachnospiraceae bacterium^c, Parasporobacterium^c, Pseudobutyrivibrio^c, Robinsoniella^c, Roseburia^c

Lachnospiraceae bacterium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1898203

has super-classes: Lachnospiraceae^c; microbe susceptibly expanded in gut of human with disease^op some rheumatoid arthritis^c

Lachnospiraceae depletion in arthritis rat gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000193

is equivalent to: has participant^op some Lachnospiraceae^c and ((part of^op some Rattus^c and (has disposition^op some arthritis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some decreased organism quantity compared with healthy controls^c)
has super-classes: arthritis rat-gut microbiome interaction^c; has participant^op some Lachnospiraceae^c and (has quality^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c)

Lactobacillaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33958

has super-classes: Lactobacillales^c
has sub-classes: Lactobacillus^c

Lactobacillales^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186826

has super-classes: Bacilli^c
has sub-classes: Dolosicoccus paucivorans^c, Enterococcaceae^c, Lactobacillaceae^c, Streptococcaceae^c

Lactobacillus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1578

has super-classes: Lactobacillaceae^c
has sub-classes: Lactobacillus acidophilus^c, Lactobacillus casei^c, Lactobacillus fermentum^c, Lactobacillus murinus^c, Lactobacillus reuteri^c, Lactobacillus rhamnosus^c, Lactobacillus salivarius^c, Lactobacillus sp.^c

Lactobacillus acidophilus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1579

has super-classes: Lactobacillus^c

Lactobacillus casei^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1582

has super-classes: Lactobacillus^c

Lactobacillus fermentum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1613

has super-classes: Lactobacillus^c

Lactobacillus murinus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1622

has super-classes: Lactobacillus^c

Lactobacillus reuteri^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1598

has super-classes: Lactobacillus^c

Lactobacillus rhamnosus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_47715

has super-classes: Lactobacillus^c

Lactobacillus salivarius^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1624

has super-classes: Lactobacillus^c; microbe susceptibly expanded in oral cavity of human with disease^op some rheumatoid arthritis^c

Lactobacillus sp.^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1591

has super-classes: Lactobacillus^c; microbe susceptibly expanded in gut of human with disease^op some rheumatoid arthritis^c

large intestine^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000059

has super-classes: subdivision of digestive tract^c; digestive system element^c

large intestine cancer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_5672

has super-classes: intestinal cancer^c
has sub-classes: colon cancer^c, colorectal cancer^c

leotiomyceta^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_716546

has super-classes: saccharomyceta^c
has sub-classes: Neurospora^c, Umbilicariaceae^c

Leptotrichia^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32067

has super-classes: Leptotrichiaceae^c
has sub-classes: Leptotrichia sp.^c

Leptotrichia sp.^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_104608

has super-classes: Leptotrichia^c; microbe susceptibly expanded in oral cavity of human with disease^op some rheumatoid arthritis^c

Leptotrichiaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1129771

has super-classes: Fusobacteriales^c
has sub-classes: Leptotrichia^c, Streptobacillus^c

liver cancer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_3571

has super-classes: hepatobiliary system cancer^c; endocrine gland cancer^c; liver disease^c
has sub-classes: liver carcinoma^c

liver carcinoma^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_686

has super-classes: carcinoma^c; liver cancer^c
has sub-classes: hepatocellular carcinoma^c

liver disease^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_409

has super-classes: endocrine system disease^c; hepatobiliary disease^c
has sub-classes: liver cancer^c

lower digestive tract^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0004907

has super-classes: subdivision of digestive tract^c

macromolecule^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_33839

has super-classes: molecular entity^c
has sub-classes: nucleic acid^c, peptide^c

Magnolia globosa^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_86731

has super-classes: Mesangiospermae^c

maintaining cell culture^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600024

has super-classes: material maintenance^c; has_specified_input^op some cultured cell population^c; has_specified_output^op some cultured cell population^c; achieves_planned_objective^op some material maintenance objective^c; has_specified_input^op some culture medium^c or cell freezing medium^c

Malassezia^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_55193

has super-classes: Basidiomycota^c; microbe^c; has quality^op some invisible to unaided eye^c
has sub-classes: Malassezia furfur^c, Malassezia pachydermatis^c, Malassezia restricta^c, Malassezia sympodialis^c

Malassezia furfur^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_55194

has super-classes: Malassezia^c

Malassezia pachydermatis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_77020

has super-classes: Malassezia^c

Malassezia restricta^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_76775

has super-classes: Malassezia^c

Malassezia sympodialis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_76777

has super-classes: Malassezia^c

Mammalia^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_40674

has super-classes: Amniota^c
has sub-classes: Euarchontoglires^c

material anatomical entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000465

has super-classes: anatomical entity^c
has sub-classes: anatomical structure^c, excreta^c

material component separation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600014

is equivalent to: achieves_planned_objective^op some material separation objective^c
has super-classes: material processing^c; has_specified_output^op some material entity^c; has_specified_input^op some material entity^c
has sub-classes: extraction^c

material entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000040

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: independent continuant^c
has sub-classes: anatomical cluster^c, anatomical entity^c, atom^c, cell^c, collection of organisms^c, drug product^c, environmental material^c, gene^c, genome^c, infection^c, molecular entity^c, organism^c, organism or virus or viroid^c, processed material^c, specimen^c, system^c
is in range of: has input^op

material maintenance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000838

is equivalent to: achieves_planned_objective^op some material maintenance objective^c
has super-classes: planned process^c
has sub-classes: maintaining cell culture^c

material maintenance objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000806

has super-classes: objective specification^c

material processing^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000094

is equivalent to: achieves_planned_objective^op some material transformation objective^c
has super-classes: planned process^c; has_specified_input^op only material entity^c; has_specified_output^op some processed material^c; has_specified_output^op only material entity^c; has_specified_input^op some material entity^c
has sub-classes: establishing cell culture^c, material component separation^c, sample preparation for assay^c

material sample^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000747

is equivalent to: material entity^c and (has role^op some material sample role^c)
has super-classes: specimen^c
has sub-classes: sample from organism^c

material sample role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000740

has super-classes: specimen role^c

material sampling process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000744

is equivalent to: specimen collection process^c and (has_specified_input^op some material entity^c) and (has_specified_output^op some material sample^c)
has super-classes: specimen collection process^c

material separation objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000639

is equivalent to: portioning objective^c or separation into different composition objective^c
has super-classes: material transformation objective^c
has sub-classes: portioning objective^c, separation into different composition objective^c

material transformation objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000456

has super-classes: objective specification^c
has sub-classes: material separation objective^c

measurand role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002444

has super-classes: role^c; role of^op some material entity^c
has sub-classes: analyte role^c

measure function^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000453

has super-classes: function^c; realized in^op only has_specified_output^op some measurement datum^c; function of^op some processed material^c

measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000109

has super-classes: data item^c; has value specification^op some value specification^c
has sub-classes: clinical measurement^c, pH value^c, scalar measurement datum^c, sequence data^c

measurement device^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000832

is equivalent to: device^c and (has function^op some measure function^c)
has super-classes: device^c
has sub-classes: DNA sequencer^c, nucleic acid sequencer^c, protein sequencer^c

measurement unit label^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000003

has super-classes: datum label^c
has sub-classes: time unit^c
is in range of: has measurement unit label^op

Megamonas hypermegale^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_158847

has super-classes: Selenomonadaceae^c; microbe susceptibly depleted in gut of human with disease^op some rheumatoid arthritis^c

Mesangiospermae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1437183

has super-classes: Eukaryota^c
has sub-classes: Magnolia globosa^c, Pentapetalae^c

Methylobacteriaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_119045

has super-classes: Proteobacteria^c
has sub-classes: Methylobacterium^c

Methylobacterium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_407

has super-classes: Methylobacteriaceae^c; microbe susceptibly expanded in respiratory airway of human with disease^op some rheumatoid arthritis^c

Microbacterium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33882

has super-classes: Micrococcales^c

microbe^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000460

is equivalent to: organism or virus or viroid^c and (has quality^op some invisible to unaided eye^c)
has super-classes: organism or virus or viroid^c; organism^c
has sub-classes: Bacteria^c, Malassezia^c, Moniliophthora^c, Schizosaccharomyces pombe^c, Viruses^c, differentially enriched microbial marker for disease^c, differentially enriched microbial marker for dysbiosis^c, saccharomyceta^c

microbial genome^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000470

has super-classes: genome^c

microbial species diversity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000466

A community species diversity that exists in a microbiome ecosystem where different microbial species are found.

has super-classes: community species diversity^c

microbiome^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000003

has super-classes: biome^c; has part^op some microbiota^c
has sub-classes: bacterial microbiome^c, fungal microbiome^c, human microbiome^c, mouse microbiome^c, viral microbiome^c

microbiome in human cutaneous system^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000017

has super-classes: human microbiome^c

microbiome in human gastrointestinal system^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000016

has super-classes: human microbiome^c
has sub-classes: human gut microbiome^c

microbiome in human lung^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000013

has super-classes: microbiome in human respiratory system^c

microbiome in human oral^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000015

has super-classes: human microbiome^c

microbiome in human respiratory system^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000014

has super-classes: human microbiome^c
has sub-classes: microbiome in human lung^c

microbiome in human urogenital system^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000018

has super-classes: human microbiome^c

microbiome-cancer interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000483

has super-classes: host-microbiome interaction^c
has sub-classes: microbiome-immune-cancer interaction^c

microbiome-gut-brain interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000482

has super-classes: host-microbiome interaction^c

microbiome-immune-cancer interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000484

has super-classes: interaction between microbiome and host immune system^c; microbiome-cancer interaction^c

microbiota^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000463

has super-classes: collection of organisms^c; (has member^op only microbe^c) and (has member^op min 2 microbe^c)

Micrococcaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1268

has super-classes: Micrococcales^c
has sub-classes: Micrococcus^c, Rothia aeria^c

Micrococcales^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_85006

has super-classes: Actinobacteria <class>^c
has sub-classes: Microbacterium^c, Micrococcaceae^c

Micrococcus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1269

has super-classes: Micrococcaceae^c; microbe susceptibly expanded in respiratory airway of human with disease^op some rheumatoid arthritis^c

Mogibacterium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_86331

has super-classes: Clostridiales Family XIII. Incertae Sedis^c

molecular entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_23367

has super-classes: material entity^c
has sub-classes: macromolecule^c

molecular feature identification objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000131

has super-classes: biological feature identification objective^c
has sub-classes: transcription profiling identification objective^c

Moniliophthora^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_221102

has super-classes: Basidiomycota^c; microbe^c; has quality^op some invisible to unaided eye^c

Morganellaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1903414

has super-classes: Enterobacterales^c
has sub-classes: Proteus mirabilis^c, Providencia^c

mouse gut microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000196

has super-classes: mouse-microbiome interaction^c; occurs in^op some lower digestive tract^c and (part of^op some Mus musculus^c)
has sub-classes: SLE mouse-gut microbiome interaction^c, arthritis mouse-gut microbiome interaction^c

mouse microbiome^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000004

has super-classes: microbiome^c; located in^op some Mus musculus^c

mouse-microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000195

has super-classes: host-microbiome interaction^c; has participant^op some Mus musculus^c and (has role^op some host role^c)
has sub-classes: mouse gut microbiome interaction^c

mouth^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000165

has super-classes: subdivision of digestive tract^c

multi-organism process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0051704

has super-classes: biological_process^c
has sub-classes: interspecies interaction between organisms^c

multicellular anatomical structure^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0010000

has super-classes: anatomical structure^c
has sub-classes: organ^c, organ part^c

Murinae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_39107

has super-classes: Rodentia^c
has sub-classes: Mus musculus^c, Rattus^c

Mus musculus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10090

has super-classes: Murinae^c

musculoskeletal system disease^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_17

has super-classes: disease of anatomical entity^c
has sub-classes: autoimmune disease of musculoskeletal system^c, connective tissue disease^c

Mycobacterium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1763

has super-classes: Corynebacteriales^c
has sub-classes: Mycobacterium avium^c

Mycobacterium avium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1764

has super-classes: Mycobacterium^c

Mycoplasma fermentans^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2115

has super-classes: Terrabacteria group^c

Natronobacillus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_472977

has super-classes: Bacillaceae^c; microbe susceptibly expanded in gut of human with disease^op some diarrhea^c

Negativicutes^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_909932

has super-classes: Firmicutes^c
has sub-classes: Phascolarctobacterium^c, Selenomonadaceae^c, Selenomonadales^c, Veillonellaceae^c

Neisseria sp.^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_192066

has super-classes: Neisseriaceae^c; microbe susceptibly depleted in oral cavity of human with disease^op some rheumatoid arthritis^c

Neisseriaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_481

has super-classes: Betaproteobacteria^c
has sub-classes: Eikenella^c, Kingella^c, Neisseria sp.^c

Neurospora^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_5140

has super-classes: leotiomyceta^c

Nocardiaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_85025

has super-classes: Corynebacteriales^c
has sub-classes: Rhodococcus^c

nucleic acid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_33696

has super-classes: macromolecule^c
has sub-classes: deoxyribonucleic acid^c, ribonucleic acid^c

nucleic acid extract^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001010

has super-classes: extract^c; processed specimen^c; (is_specified_output_of^op some nucleic acid extraction^c) and (has role^op some specimen role^c); has grain^op some nucleic acid^c
has sub-classes: DNA extract^c, RNA extract^c

nucleic acid extraction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0666667

has super-classes: extraction^c; has_specified_input^op some sample from organism^c or organism^c or cultured cell population^c; has_specified_output^op some nucleic acid^c
has sub-classes: DNA extraction^c, RNA extraction^c

nucleic acid sequencer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001108

has super-classes: measurement device^c; has function^op some measure function^c

Obesity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HP_0001513

has super-classes: Phenotypic abnormality^c

objective specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000005

has super-classes: directive information entity^c
has sub-classes: assay objective^c, biological feature identification objective^c, material maintenance objective^c, material transformation objective^c, specimen collection objective^c
is in domain of: objective_achieved_by^op
is in range of: achieves_planned_objective^op

occurrent^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000003

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: entity^c; in similarity relationship with^op only occurrent^c
has sub-classes: process^c, process boundary^c
is in domain of: causal relation between processes^op, has participant^op, occurs in^op, preceded by^op, precedes^op, starts during^op, temporal relation^op
is in range of: causal relation between processes^op, participates in^op, preceded by^op, precedes^op, starts during^op, temporal relation^op

Odoribacter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_283168

has super-classes: Bacteroidales^c

Opisthokonta^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33154

has super-classes: Eukaryota^c
has sub-classes: Bilateria^c, Fungi^c

oral cavity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000167

has super-classes: anatomical entity^c

organ^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000062

has super-classes: multicellular anatomical structure^c
has sub-classes: digestive system element^c, respiratory airway^c

organ part^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000064

has super-classes: multicellular anatomical structure^c
has sub-classes: subdivision of digestive tract^c, zone of skin^c

organ system cancer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_0050686

has super-classes: cancer^c
has sub-classes: endocrine gland cancer^c, gastrointestinal system cancer^c

organism^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100026

is equivalent to: Viruses^c or Bacteria^c or Archaea^c or Eukaryota^c
has super-classes: material entity^c
has sub-classes: Archaea^c, Eukaryota^c, host^c, microbe^c
is in domain of: microbe susceptibly changed in host with disease^op, microbe susceptibly depleted in host with disease^op, microbe susceptibly expanded in host with disease^op
is in range of: disease in host with susceptibly depleted microbe^op, disease in host with susceptibly expanded microbe^op

organism or virus or viroid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CARO_0001010

is equivalent to: organism^c
has super-classes: material entity^c
has sub-classes: Archaea^c, Eukaryota^c, host^c, microbe^c

organismal quality^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001995

has super-classes: quality^c
has sub-classes: biological sex^c

Oscillibacter^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_459786

has super-classes: Clostridiales^c

pancreatic cancer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_1793

Xref MGI.

has super-classes: endocrine gland cancer^c

Pancrustacea^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_197562

has super-classes: Ecdysozoa^c
has sub-classes: Daphnia^c, Drosophila melanogaster^c

Parabacteroides^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_375288

has super-classes: Tannerellaceae^c

Paraprevotella^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_577309

has super-classes: Prevotellaceae^c

Parasporobacterium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_115543

has super-classes: Lachnospiraceae^c

Parvimonas^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_543311

has super-classes: Firmicutes^c
has sub-classes: Parvimonas micra^c

Parvimonas micra^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33033

has super-classes: Parvimonas^c

Pasteurellaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_712

has super-classes: Gammaproteobacteria^c
has sub-classes: Aggregatibacter^c, Haemophilus^c

pathologic process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_1110122

has super-classes: biological_process^c
has sub-classes: infection process^c

patient with RA having decreased gut microbial diversity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000030

has super-classes: RA human-gut microbiome interaction^c; has participant^op some microbe^c and (has quality^op some descreased microbiome organism diversity^c)

Pentapetalae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1437201

has super-classes: Mesangiospermae^c
has sub-classes: Arabidopsis thaliana^c, Badula fragilis^c

peptide^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_16670

has super-classes: macromolecule^c
has sub-classes: protein^c

Peptostreptococcaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186804

has super-classes: Clostridiales^c
has sub-classes: Clostridioides difficile^c, Filifactor^c, Peptostreptococcus^c, [Clostridium] hiranonis^c

Peptostreptococcus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1257

has super-classes: Peptostreptococcaceae^c
has sub-classes: Peptostreptococcus anaerobius^c, Peptostreptococcus stomatis^c

Peptostreptococcus anaerobius^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1261

has super-classes: Peptostreptococcus^c

Peptostreptococcus stomatis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_341694

has super-classes: Peptostreptococcus^c

pH value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000464

has super-classes: measurement datum^c

Phascolarctobacterium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33024

has super-classes: Negativicutes^c

Phenotype^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UPHENO_0001001

has super-classes: quality^c
has sub-classes: abnormal phenotype^c

Phenotypic abnormality^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/HP_0000118

This is the root of the phenotypic abnormality subontology of the HPO.

has super-classes: abnormal phenotype^c
has sub-classes: Diarrhea^c, Obesity^c

Photobacterium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_657

has super-classes: Vibrionaceae^c

physical object quality^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001241

Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles.

has super-classes: quality^c
has sub-classes: age^c, invisible to unaided eye^c, population quality^c

plan specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000104

2/3/2009 Comment from OBI review. Action specification not well enough specified. Conditional specification not well enough specified. Question whether all plan specifications have objective specifications. Request that IAO either clarify these or change definitions not to use them

has super-classes: directive information entity^c; has part^op some objective specification^c; has part^op some action specification^c

planned process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000011

is equivalent to: realizes^op some concretizes^op some plan specification^c
has super-classes: process^c
has sub-classes: assay^c, material maintenance^c, material processing^c, specimen collection process^c
is in domain of: achieves_planned_objective^op, has_specified_input^op, has_specified_output^op
is in range of: is_specified_input_of^op, is_specified_output_of^op, objective_achieved_by^op

population quality^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002003

has super-classes: physical object quality^c
has sub-classes: quality of an ecological community^c

Porphyromonadaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_171551

has super-classes: Bacteroidales^c
has sub-classes: Porphyromonas^c

Porphyromonas^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_836

has super-classes: Porphyromonadaceae^c; microbe susceptibly depleted in respiratory airway of human with disease^op some rheumatoid arthritis^c; microbe susceptibly depleted in gut of human with disease^op some rheumatoid arthritis^c
has sub-classes: Porphyromonas gingivalis^c, Porphyromonas macacae^c

Porphyromonas gingivalis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_837

has super-classes: Porphyromonas^c; microbe susceptibly expanded in gut of human with disease^op some rheumatoid arthritis^c; microbe susceptibly expanded in oral cavity of human with disease^op some rheumatoid arthritis^c

Porphyromonas macacae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon__28115

has super-classes: Porphyromonas^c

portioning objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000678

has super-classes: material separation objective^c

Prevotella^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_838

has super-classes: Prevotellaceae^c; microbe susceptibly expanded in gut of human with disease^op some enthesitis-related juvenile idiopathic arthritis^c; microbe susceptibly expanded in oral cavity of human with disease^op some rheumatoid arthritis^c; microbe susceptibly depleted in respiratory airway of human with disease^op some rheumatoid arthritis^c; microbe susceptibly depleted in gut of human with disease^op some rheumatoid arthritis^c; microbe susceptibly expanded in gut of human with disease^op some colorectal cancer^c; microbe susceptibly expanded in oral cavity of human with disease^op some systemic lupus erythematosus^c; microbe susceptibly depleted in gut of human with disease^op some diarrhea^c; microbe susceptibly expanded in gut of human with disease^op some systemic lupus erythematosus^c; microbe susceptibly expanded in gut of rat with disease^op some ankylosing spondylitis^c
has sub-classes: Prevotella copri^c, Prevotella intermedia^c, Prevotella oris^c, Prevotella oulorum^c, Prevotella pleuritidis^c, Prevotella stercorea^c

Prevotella copri^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_165179

has super-classes: Prevotella^c; microbe susceptibly depleted in gut of human with disease^op some colorectal cancer^c; microbe susceptibly depleted in gut of human with disease^op some juvenile rheumatoid arthritis^c; microbe susceptibly expanded in gut of human with disease^op some rheumatoid arthritis^c; microbe susceptibly expanded in gut of mouse with disease^op some arthritis^c

Prevotella intermedia^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_28131

has super-classes: Prevotella^c; microbe susceptibly expanded in oral cavity of human with disease^op some rheumatoid arthritis^c

Prevotella oris^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_28135

has super-classes: Prevotella^c

Prevotella oulorum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_28136

has super-classes: Prevotella^c

Prevotella pleuritidis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_407975

has super-classes: Prevotella^c

Prevotella stercorea^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_363265

has super-classes: Prevotella^c

Prevotellaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_171552

has super-classes: Bacteroidales^c; microbe susceptibly expanded in gut of human with disease^op some rheumatoid arthritis^c
has sub-classes: Paraprevotella^c, Prevotella^c

primary structure of DNA macromolecule^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000811

is equivalent to: is concretized as^op some inheres in^op some deoxyribonucleic acid^c
has super-classes: region^c

process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000015

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: occurrent^c; has prototype^op only process^c
has sub-classes: biological_process^c, interaction^c, planned process^c
is in domain of: has input^op, realizes^op, regulated by^op, regulates^op, transitively provides input for^op
is in range of: is duration of^op, realized in^op, regulated by^op, regulates^op, transitively provides input for^op

process boundary^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000035

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: occurrent^c

processed material^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000047

is equivalent to: material entity^c and (is_specified_output_of^op some material processing^c)
has super-classes: material entity^c
has sub-classes: cell freezing medium^c, culture medium^c, cultured cell population^c, device^c, experimentally modified cell in vitro^c, extract^c, processed specimen^c

processed specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000953

A tissue sample that has been sliced and stained for a histology study.

is equivalent to: processed material^c and specimen^c
has super-classes: processed material^c; specimen^c
has sub-classes: nucleic acid extract^c

Propionibacteriaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_31957

has super-classes: Actinobacteria <class>^c
has sub-classes: Cutibacterium acnes 17B^c, Propionibacterium^c

Propionibacterium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1743

has super-classes: Propionibacteriaceae^c

protein^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PR_000000001

Proteins descended from a common ancestor can be classified into families and superfamilies composed of products of evolutionarily-related genes. The domain architecture of a protein is described by the order of its constituent domains. Proteins with the same domains in the same order are defined as homeomorphic [PRO:WCB].

has super-classes: peptide^c

protein sequencer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001137

has super-classes: measurement device^c; has function^op some measure function^c

Proteobacteria^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1224

has super-classes: Bacteria^c
has sub-classes: Betaproteobacteria^c, Gammaproteobacteria^c, Methylobacteriaceae^c, delta/epsilon subdivisions^c, unclassified Proteobacteria^c

Proteus mirabilis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_584

has super-classes: Morganellaceae^c; microbe susceptibly expanded in gut of human with disease^op some rheumatoid arthritis^c

Providencia^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_586

has super-classes: Morganellaceae^c

PsA human oral cavity microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000166

has super-classes: human oral cavity microbiome interaction^c; has participant^op some Homo sapiens^c and (has disposition^op some psoriatic arthritis^c)
has sub-classes: expansion of Candida albicans in PsA human oral cavity^c

PsA human zone of skin microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000122

has super-classes: human skin microbiome interaction^c; has participant^op some Homo sapiens^c and (has disposition^op some psoriatic arthritis^c)
has sub-classes: depletion of Actinobacteria <phylum> in PsA human skin^c, depletion of Malassezia pachydermatis in PsA human skin^c, depletion of Malassezia restricta in PsA human skin^c, depletion of Malassezia sympodialis in PsA human skin^c, depletion of Proteobacteria in PsA human skin^c, expansion of Bacteroidetes in PsA human skin^c, expansion of Firmicutes in PsA human skin^c, expansion of Malassezia furfur in PsA human skin^c

PsA human-gut microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000152

has super-classes: human-gut microbiome interaction^c; has participant^op some Homo sapiens^c and (has disposition^op some psoriatic arthritis^c)
has sub-classes: depletion of Coprobacillus in PsA human gut^c, depletion of Coprococcus in PsA human gut^c, depletion of Parabacteroides in PsA human gut^c, depletion of Pseudobutyrivibrio in PsA human gut^c, depletion of Ruminococcus in PsA human gut^c, depletion of Verrucomicrobia in PsA human gut^c, expansion of Candida albicans in PsA human gut^c, expansion of Diutina rugosa in PsA human gut^c

Pseudobutyrivibrio^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_46205

has super-classes: Lachnospiraceae^c
has sub-classes: Pseudobutyrivibrio ruminis^c

Pseudobutyrivibrio ruminis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_46206

has super-classes: Pseudobutyrivibrio^c

Pseudomonadales^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_72274

has super-classes: Gammaproteobacteria^c
has sub-classes: Acinetobacter^c, Pseudomonas^c

Pseudomonas^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_286

has super-classes: Pseudomonadales^c
has sub-classes: Pseudomonas sp.^c

Pseudomonas sp.^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_306

has super-classes: Pseudomonas^c

Pseudonocardia^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1847

has super-classes: Pseudonocardiaceae^c; microbe susceptibly expanded in respiratory airway of human with disease^op some rheumatoid arthritis^c

Pseudonocardiaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2070

has super-classes: Actinobacteria <class>^c
has sub-classes: Pseudonocardia^c

psoriatic arthritis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_9008

has super-classes: arthritis^c

PVC group^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1783257

has super-classes: Bacteria^c
has sub-classes: Chlamydia^c, Verrucomicrobia^c

quality^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000019

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: specifically dependent continuant^c
has sub-classes: Phenotype^c, decreased organism quantity compared with fibromyalgia patients^c, decreased organism quantity compared with healthy controls^c, decreased organism quantity in acute disease patient compared with chronic disease control^c, descreased microbiome organism diversity^c, increased organism quantity compared with healthy control^c, organismal quality^c, physical object quality^c
is in range of: has quality^op

quality of an ecological community^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000004

Includes qualities like diversity, species richness, stability, resilience, community structure, number of trophic levels. A community quality may depend on the qualities of individual organism in the community, but cannot be measured or described for a single individual.

has super-classes: population quality^c
has sub-classes: community species diversity^c, community species evenness^c, community species richness^c, relative species abundance^c

RA human oral cavity microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000083

has super-classes: human oral cavity microbiome interaction^c; has participant^op some Homo sapiens^c and (has disposition^op some rheumatoid arthritis^c)
has sub-classes: depletion of Aggregatibacter in RA human oral cavity^c, depletion of Cardiobacterium in RA human oral cavity^c, depletion of Eikenella in RA human oral cavity^c, depletion of Haemophilus in RA human oral cavity^c, depletion of Kingella in RA human oral cavity^c, depletion of Neisseria sp. in RA human oral cavity^c, depletion of Rothia aeria in RA human oral cavity^c, expansion of Actinomyces in RA human oral cavity^c, expansion of Atopobium sp. in RA human oral cavity^c, expansion of Cryptobacterium curtum in RA human oral cavity^c, expansion of Lactobacillus salivarius in RA human oral cavity^c, expansion of Leptotrichia sp. in RA human oral cavity^c, expansion of Porphyromonas gingivalis in RA human oral cavity^c, expansion of Prevotella in RA human oral cavity^c, expansion of Tannerella forsythia in RA human oral cavity^c, expansion of Veillonella in RA human oral cavity^c

RA human respiratory airway microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000078

has super-classes: human respiratory airway microbiome interaction^c; has participant^op some Homo sapiens^c and (has disposition^op some rheumatoid arthritis^c)
has sub-classes: depletion of Actynomyces in RA human respiratory airway^c, depletion of Burkholderia in RA human respiratory airway^c, depletion of Porphyromonas in RA human respiratory airway^c, depletion of Prevotella in RA human respiratory airway^c, depletion of Treponema in RA human respiratory airway^c, expansion of Methylobacterium in RA human respiratory airway^c, expansion of Micrococcus in RA human respiratory airway^c, expansion of Pseudonocardia in RA human respiratory airway^c

RA human-gut microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000029

has super-classes: human-gut microbiome interaction^c; has participant^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c); occurs in^op some lower digestive tract^c
has sub-classes: depletion of Bacteroides in RA human gut^c, depletion of Bacteroides in RA human gut compared to fibromyalgia patients^c, depletion of Bifidobacterium bifidum in RA human gut^c, depletion of Bifidobacterium bifidum in RA human gut compared to fibromyalgia patients^c, depletion of Blautia coccoides in RA human gut compared to fibromyalgia patients^c, depletion of Faecalibacterium in RA human gut^c, depletion of Haemophilus spp. in RA human gut^c, depletion of Klebsiella pneumoniae in RA human gut^c, depletion of Megamonas hypermegale in RA human gut^c, depletion of Porphyromonas in RA human gut compared to fibromyalgia patients^c, depletion of Prevotella in RA human gut compared to fibromyalgia patients^c, depletion of Sutterella wadsworthensis in RA human gut^c, depletion of Veillonella in RA human gut^c, expansion of Actinobacteria<phylum> in RA human gut^c, expansion of Clostridia in RA human gut^c, expansion of Escherichia coli in RA human gut^c, expansion of Lactobacillus sp in RA human gut^c, expansion of Porphyromonas gingivalis in RA human gut^c, expansion of Prevotellaceae in RA human gut^c, expansion of Proteus mirabilis in RA human gut^c, patient with RA having decreased gut microbial diversity^c, segregation of Prevotella or Bacteroides dominance in RA human gut^c

RA human-urine microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000345

has super-classes: human-urine microbiome interaction^c; has participant^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c); occurs in^op some urine^c
has sub-classes: expansion of Proteus mirabilis in RA human urine^c

rat gut microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000095

has super-classes: rat-microbiome interaction^c; occurs in^op some lower digestive tract^c and (part of^op some Rattus^c)
has sub-classes: AS rat-gut microbiome interaction^c, arthritis rat-gut microbiome interaction^c

rat-microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000047

has super-classes: host-microbiome interaction^c; has participant^op some Rattus^c and (has role^op some host role^c)
has sub-classes: rat gut microbiome interaction^c

Rattus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10114

has super-classes: Murinae^c
has sub-classes: Rattus norvegicus^c

Rattus norvegicus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10116

has super-classes: Rattus^c

reactive arthritis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_6196

has super-classes: arthritis^c

reactive arthritis rat-gut microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000280

has super-classes: arthritis rat-gut microbiome interaction^c; has participant^op some Rattus^c and (has disposition^op some reactive arthritis^c)
has sub-classes: expansion of Salmonella in reactive arthritis rat gut^c, expansion of Yersinia in reactive arthritis rat gut^c

reagent role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000086

(copied from ReO) Reagents are distinguished from instruments or devices that also participate in scientific techniques by the fact that reagents are chemical or biological in nature and necessarily participate in or have parts that participate in some chemical interaction or reaction during their intended participation in some technique. By contrast, instruments do not participate in a chemical reaction/interaction during the technique. Reagents are distinguished from study subjects/evaluants in that study subjects and evaluants are that about which conclusions are drawn and knowledge is sought in an investigation - while reagents, by definition, are not. It should be noted, however, that reagent and study subject/evaluant roles can be borne by instances of the same type of material entity - but a given instance will realize only one of these roles in the execution of a given assay or technique. For example, taq polymerase can bear a reagent role or an evaluant role. In a DNA sequencing assay aimed at generating sequence data about some plasmid, the reagent role of the taq polymerase is realized. In an assay to evaluate the quality of the taq polymerase itself, the evaluant/study subject role of the taq is realized, but not the reagent role since the taq is the subject about which data is generated. In regard to the statement that reagents are 'distinct' from the specified outputs of a technique, note that a reagent may be incorporated into a material output of a technique, as long as the IDENTITY of this output is distinct from that of the bearer of the reagent role. For example, dNTPs input into a PCR are reagents that become part of the material output of this technique, but this output has a new identity (ie that of a 'nucleic acid molecule') that is distinct from the identity of the dNTPs that comprise it. Similarly, a biotin molecule input into a cell labeling technique are reagents that become part of the specified output, but the identity of the output is that of some modified cell specimen which shares identity with the input unmodified cell specimen, and not with the biotin label. Thus, we see that an important criteria of 'reagent-ness' is that it is a facilitator, and not the primary focus of an investigation or material processing technique (ie not the specified subject/evaluant about which knowledge is sought, or the specified output material of the technique).

has super-classes: role^c

realizable entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000017

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: specifically dependent continuant^c
has sub-classes: disposition^c, role^c
is in domain of: realized in^op
is in range of: realizes^op

region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/SO_0000001

has super-classes: generically dependent continuant^c
has sub-classes: primary structure of DNA macromolecule^c

relative abundance of microbe in host^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000469

has super-classes: relative species abundance^c

relative species abundance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000468

has super-classes: quality of an ecological community^c
has sub-classes: relative abundance of microbe in host^c

respiratory airway^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001005

has super-classes: organ^c

restoring human gut microbiome resistance to C. difficile infection by fecal microbiota transplantation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000027

has super-classes: human gut microbiome and Clostridium difficile interaction^c

rheumatic disease^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_1575

has super-classes: autoimmune disease of musculoskeletal system^c; connective tissue disease^c
has sub-classes: ankylosing spondylitis^c, arthritis^c, systemic lupus erythematosus^c

rheumatoid arthritis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_7148

OMIM mapping confirmed by DO. [SN].

has super-classes: arthritis^c
has sub-classes: juvenile rheumatoid arthritis^c

Rhodococcus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1827

has super-classes: Nocardiaceae^c

ribonucleic acid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_33697

has super-classes: nucleic acid^c

Rikenellaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_171550

has super-classes: Bacteroidales^c
has sub-classes: Alistipes^c

Rikenellaceae depletion in AS rat gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000226

is equivalent to: has participant^op some Rikenellaceae^c and ((part of^op some Rattus^c and (has disposition^op some ankylosing spondylitis^c)) and (located in^op some lower digestive tract^c)) and (has quality^op some decreased organism quantity compared with healthy controls^c)
has super-classes: AS rat-gut microbiome interaction^c; has participant^op some Rikenellaceae^c and (has quality^op some decreased organism quantity compared with healthy controls^c) and (located in^op some lower digestive tract^c)

RNA extract^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000880

has super-classes: nucleic acid extract^c; is_specified_output_of^op some RNA extraction^c; has grain^op some ribonucleic acid^c

RNA extraction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0666666

has super-classes: nucleic acid extraction^c; has_specified_output^op some ribonucleic acid^c

RNA-seq assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001271

has super-classes: transcription profiling assay^c; sequencing assay^c; achieves_planned_objective^op some transcription profiling identification objective^c; (realizes^op some analyte role^c and (inheres in^op some ribonucleic acid^c)) and (has_specified_input^op some ribonucleic acid^c); has_specified_input^op some specimen^c and (has part^op some ribonucleic acid^c); (realizes^op some function^c and (inheres in^op some DNA sequencer^c)) and (has_specified_input^op some DNA sequencer^c); has_specified_output^op some is about^op some gene expression^c; has_specified_output^op some sequence data^c

Robinsoniella^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_588605

has super-classes: Lachnospiraceae^c

Rodentia^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9989

has super-classes: Euarchontoglires^c
has sub-classes: Murinae^c

role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000023

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: realizable entity^c
has sub-classes: evaluant role^c, host role^c, measurand role^c, reagent role^c, specimen role^c
is in range of: has role^op

Roseburia^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_841

has super-classes: Lachnospiraceae^c
has sub-classes: Roseburia hominis^c

Roseburia hominis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_301301

has super-classes: Roseburia^c

Rothia aeria^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_172042

has super-classes: Micrococcaceae^c; microbe susceptibly depleted in oral cavity of human with disease^op some rheumatoid arthritis^c

Ruminococcaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_541000

has super-classes: Clostridiales^c
has sub-classes: Acetanaerobacterium^c, Anaerotruncus^c, Faecalibacterium^c, Ruminococcus^c, Subdoligranulum^c

Ruminococcus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1263

has super-classes: Ruminococcaceae^c
has sub-classes: Ruminococcus albus^c, Ruminococcus lactaris^c, Ruminococcus sp.^c

Ruminococcus albus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1264

has super-classes: Ruminococcus^c

Ruminococcus lactaris^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_46228

has super-classes: Ruminococcus^c

Ruminococcus sp.^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_41978

has super-classes: Ruminococcus^c

Saccharomyces cerevisiae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_4932

has super-classes: Saccharomycetales^c

saccharomyceta^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_716545

has super-classes: Ascomycota^c; microbe^c; has quality^op some invisible to unaided eye^c
has sub-classes: Saccharomycetales^c, leotiomyceta^c

Saccharomycetales^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_4892

has super-classes: saccharomyceta^c
has sub-classes: Candida <Debaryomycetaceae>^c, Diutina rugosa^c, Saccharomyces cerevisiae^c

Salmonella^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_590

has super-classes: Enterobacteriaceae^c
has sub-classes: Salmonella enterica^c

Salmonella enterica^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_28901

has super-classes: Salmonella^c
has sub-classes: Salmonella enterica subsp. enterica^c

Salmonella enterica subsp. enterica^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_59201

has super-classes: Salmonella enterica^c
has sub-classes: Salmonella enterica subsp. enterica serovar Typhi^c, Salmonella enterica subsp. enterica serovar Typhimurium^c

Salmonella enterica subsp. enterica serovar Typhi^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_90370

has super-classes: Salmonella enterica subsp. enterica^c

Salmonella enterica subsp. enterica serovar Typhimurium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_90371

has super-classes: Salmonella enterica subsp. enterica^c

sample from organism^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000671

is equivalent to: (is_specified_output_of^op some collecting specimen from organism^c) and (has role^op some material sample role^c)
has super-classes: material sample^c; specimen from organism^c; derives from^op some material anatomical entity^c

sample preparation for assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000073

has super-classes: material processing^c; achieves_planned_objective^op some material transformation objective^c
has sub-classes: sample preparation for sequencing assay^c

sample preparation for sequencing assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001902

is equivalent to: sample preparation for assay^c and (has_specified_input^op some specimen^c and (has grain^op some nucleic acid^c)) and (has_specified_output^op some specimen^c and (is_specified_input_of^op some sequencing assay^c))
has super-classes: sample preparation for assay^c

sampling time measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001508

has super-classes: time measurement datum^c

scalar measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000032

has super-classes: measurement datum^c; has value specification^op some scalar value specification^c; has measurement value^dp min 1; has measurement unit label^op min 1
has sub-classes: time measurement datum^c
is in domain of: has measurement value^dp

scalar value specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001931

has super-classes: value specification^c; has specified numeric value^dp min 1; has measurement unit label^op min 1

Schizosaccharomyces pombe^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_4896

has super-classes: Ascomycota^c; microbe^c; has quality^op some invisible to unaided eye^c

segregation of Prevotella or Bacteroides dominance in RA human gut^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000051

is equivalent to: has participant^op some (Bacteroides sp.^c or Prevotella^c) and (microbial population phenotype in host^op some increased organism quantity compared with healthy control^c) and (located in^op some lower digestive tract^c and (part of^op some Homo sapiens^c and (has disease^op some rheumatoid arthritis^c)))
has super-classes: RA human-gut microbiome interaction^c; has microbe expanded in diseased host^op some Bacteroides sp.^c or Prevotella^c; occurs in^op some lower digestive tract^c
has sub-classes: expansion of Bacteroides sp. in RA human gut^c, expansion of Prevotella copri in RA human gut^c, expansion of Prevotella in ERA human gut^c

Selenomonadaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1843491

has super-classes: Negativicutes^c
has sub-classes: Megamonas hypermegale^c, Selenomonas^c

Selenomonadales^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_909929

has super-classes: Negativicutes^c

Selenomonas^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_970

has super-classes: Selenomonadaceae^c

separation into different composition objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000681

has super-classes: material separation objective^c

sequence data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000973

has super-classes: measurement datum^c; measurement datum^c and (is about^op some region^c)
has sub-classes: DNA sequence data^c

sequencing assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600047

is equivalent to: assay^c and ((realizes^op some function^c and (inheres in^op some nucleic acid sequencer^c or protein sequencer^c or DNA sequencer^c)) and (has_specified_input^op some nucleic acid sequencer^c or protein sequencer^c or DNA sequencer^c)) and ((realizes^op some evaluant role^c and (role of^op some nucleic acid extract^c or (has part^op some protein^c))) and (has_specified_input^op some (nucleic acid extract^c or (has part^op some protein^c)) and (has role^op some evaluant role^c))) and (has_specified_output^op some sequence data^c) and (has_specified_output^op some is about^op some region^c)
has super-classes: assay^c
has sub-classes: DNA sequencing assay^c, RNA-seq assay^c

Serratia^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_613

has super-classes: Yersiniaceae^c

serum immunoglobulin A level^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CMO_0002095

has super-classes: serum immunoglobulin measurement^c

serum immunoglobulin G level^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CMO_0002102

has super-classes: serum immunoglobulin measurement^c

serum immunoglobulin M level^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CMO_0002104

has super-classes: serum immunoglobulin measurement^c

serum immunoglobulin measurement^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CMO_0001276

has super-classes: blood immunoglobulin measurement^c
has sub-classes: serum immunoglobulin A level^c, serum immunoglobulin G level^c, serum immunoglobulin M level^c

Shigella^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_620

has super-classes: Enterobacteriaceae^c
has sub-classes: Shigella dysenteriae^c

Shigella dysenteriae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_622

has super-classes: Shigella^c

Slackia^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_84108

has super-classes: Eggerthellaceae^c

SLE human oral cavity microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000082

has super-classes: human oral cavity microbiome interaction^c; has participant^op some Homo sapiens^c and (has disposition^op some systemic lupus erythematosus^c)
has sub-classes: depletion of Capnocytophaga gingivalis in SLE human oral cavity^c, depletion of Clostridiales in SLE human oral cavity^c, depletion of Haemophilus parainfluenzae in SLE human oral cavity^c, depletion of Prevotella pleuritidis in SLE human oral cavity^c, depletion of Pseudomonas sp. in SLE human oral cavity^c, depletion of Streptococcus sanguinis in SLE human oral cavity^c, depletion of Treponema maltophilum in SLE human oral cavity^c, expansion of Fretibacterium fastidiosum in SLE human oral cavity^c, expansion of Fusobacterium in SLE human oral cavity^c, expansion of Prevotella in SLE human oral cavity^c, expansion of Selenomonas in SLE human oral cavity^c, expansion of Treponema in SLE human oral cavity^c

SLE human-gut microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000053

has super-classes: human-gut microbiome interaction^c; has participant^op some Homo sapiens^c and (has disposition^op some systemic lupus erythematosus^c)
has sub-classes: depletion of Dialister in SLE human gut^c, depletion of Firmicutes in SLE human gut^c, depletion of Pseudobutyrivibrio in SLE human gut^c, expansion of Bacteroidetes in SLE human gut^c, expansion of Eggerthella in SLE human gut^c, expansion of Eubacterium in SLE human gut^c, expansion of Flavonifractor in SLE human gut^c, expansion of Klebsiella in SLE human gut^c, expansion of Rhodococcus in SLE human gut^c

SLE mouse-gut microbiome interaction^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000197

has super-classes: mouse gut microbiome interaction^c; has participant^op some Mus musculus^c and (has disposition^op some systemic lupus erythematosus^c)
has sub-classes: depletion of Lactobacillus in SLE mouse gut^c, expansion of Alistipes in SLE mouse gut^c, expansion of Clostridiales in SLE mouse gut^c, expansion of Streptococcaceae in SLE mouse gut^c

small intestine^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0002108

has super-classes: subdivision of digestive tract^c; digestive system element^c

Solobacterium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_123375

has super-classes: Erysipelotrichaceae^c
has sub-classes: Solobacterium moorei^c, Solobacterium sp. S4-A19^c

Solobacterium moorei^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_102148

has super-classes: Solobacterium^c

Solobacterium sp. S4-A19^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1219642

has super-classes: Solobacterium^c

spatial region^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000006

has super-classes: immaterial entity^c

specifically dependent continuant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000020

is defined by: http://purl.obolibrary.org/obo/bfo.owl

has super-classes: continuant^c
has sub-classes: quality^c, realizable entity^c
is in domain of: concretizes^op
is in range of: bearer of^op, is concretized as^op

specimen^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100051

is equivalent to: material entity^c and (has role^op some specimen role^c)
has super-classes: material entity^c
has sub-classes: material sample^c, processed specimen^c, specimen from organism^c

specimen collection objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000684

has super-classes: objective specification^c

specimen collection process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000659

is equivalent to: planned process^c and (achieves_planned_objective^op some specimen collection objective^c)
has super-classes: planned process^c; has_specified_output^op some specimen^c; has_specified_input^op some material entity^c
has sub-classes: collecting specimen from organism^c, environmental material collection process^c, material sampling process^c

specimen collection time measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001619

has super-classes: time measurement datum^c; is about^op some process boundary^c and (starts^op some specimen collection process^c)

specimen from organism^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001479

is equivalent to: (has role^op some specimen role^c) and (derives from^op some material anatomical entity^c or anatomical cluster^c)
has super-classes: specimen^c
has sub-classes: sample from organism^c

specimen role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000112

has super-classes: role^c; inheres in^op some material entity^c and (is_specified_output_of^op some specimen collection process^c)
has sub-classes: material sample role^c

Spirochaetaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_137

has super-classes: Bacteria^c
has sub-classes: Treponema^c

stomach^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000945

has super-classes: subdivision of digestive tract^c; digestive system element^c

stomach cancer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_10534

OMIM mapping confirmed by DO. [SN].

has super-classes: gastrointestinal system cancer^c
has sub-classes: stomach carcinoma^c

stomach carcinoma^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_5517

has super-classes: stomach cancer^c; carcinoma^c

Streptobacillus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_34104

has super-classes: Leptotrichiaceae^c

Streptococcaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1300

has super-classes: Lactobacillales^c
has sub-classes: Streptococcus^c

Streptococcus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1301

has super-classes: Streptococcaceae^c
has sub-classes: Streptococcus equinus^c, Streptococcus gallolyticus^c, Streptococcus pyogenes^c, Streptococcus sanguinis^c, Streptococcus sp. 'group A'^c, Streptococcus thermophilus^c

Streptococcus equinus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1335

has super-classes: Streptococcus^c

Streptococcus gallolyticus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_315405

has super-classes: Streptococcus^c

Streptococcus pyogenes^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1314

has super-classes: Streptococcus^c

Streptococcus sanguinis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1305

has super-classes: Streptococcus^c

Streptococcus sp. 'group A'^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_36470

has super-classes: Streptococcus^c

Streptococcus thermophilus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1308

has super-classes: Streptococcus^c

subdivision of digestive tract^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0004921

has super-classes: organ part^c
has sub-classes: intestine^c, large intestine^c, lower digestive tract^c, mouth^c, small intestine^c, stomach^c, upper digestive tract^c

Subdoligranulum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_292632

has super-classes: Ruminococcaceae^c
has sub-classes: Subdoligranulum sp. 60_17^c

Subdoligranulum sp. 60_17^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1897022

has super-classes: Subdoligranulum^c

Sulfurovum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_265570

has super-classes: Epsilonproteobacteria^c

Sutterella wadsworthensis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_40545

has super-classes: Burkholderiales^c; microbe susceptibly depleted in gut of human with disease^op some rheumatoid arthritis^c

system^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/RO_0002577

has super-classes: material entity^c
has sub-classes: environmental system^c

systemic lupus erythematosus^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/DOID_9074

Xref MGI.

has super-classes: rheumatic disease^c

Tannerella forsythia^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_28112

has super-classes: Tannerellaceae^c; microbe susceptibly expanded in oral cavity of human with disease^op some rheumatoid arthritis^c

Tannerellaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2005525

has super-classes: Bacteroidales^c
has sub-classes: Parabacteroides^c, Tannerella forsythia^c

Terrabacteria group^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1783272

has super-classes: Bacteria^c
has sub-classes: Actinobacteria <phylum>^c, Anaerolineales^c, Chloroflexi^c, Firmicutes^c, Mycoplasma fermentans^c

Tetrapoda^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32523

has super-classes: Euteleostomi^c
has sub-classes: Amniota^c, Anura^c

thing^c back to ToC or Class ToC

IRI: http://www.w3.org/2002/07/owl#Thing

has sub-classes: entity^c

time measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000416

has super-classes: scalar measurement datum^c; (has measurement unit label^op only time unit^c) and (is duration of^op only process^c)
has sub-classes: sampling time measurement datum^c, specimen collection time measurement datum^c
is in domain of: is duration of^op

time unit^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000003

has super-classes: measurement unit label^c

transcription profiling assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000424

is equivalent to: assay^c and ((realizes^op some evaluant role^c and (role of^op some RNA extract^c)) and (has_specified_input^op some RNA extract^c and (has role^op some evaluant role^c))) and ((realizes^op some analyte role^c and (inheres in^op some ribonucleic acid^c)) and (has_specified_input^op some ribonucleic acid^c)) and (has_specified_input^op some specimen^c and (has part^op some ribonucleic acid^c)) and (has_specified_output^op some measurement datum^c) and (has_specified_output^op some is about^op some gene expression^c) and (achieves_planned_objective^op some transcription profiling identification objective^c)
has super-classes: assay^c
has sub-classes: RNA-seq assay^c

transcription profiling identification objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001331

has super-classes: molecular feature identification objective^c

Treponema^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_157

has super-classes: Spirochaetaceae^c; microbe susceptibly depleted in respiratory airway of human with disease^op some rheumatoid arthritis^c
has sub-classes: Treponema denticola^c, Treponema maltophilum^c

Treponema denticola^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_158

has super-classes: Treponema^c

Treponema maltophilum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_51160

has super-classes: Treponema^c

Umbilicariaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_87265

has super-classes: leotiomyceta^c

unclassified Clostridiales^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_186813

has super-classes: Clostridiales^c
has sub-classes: Flavonifractor^c

unclassified Proteobacteria^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32045

has super-classes: Proteobacteria^c; microbe susceptibly expanded in gut of human with disease^op some diarrhea^c

upper digestive tract^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0004908

has super-classes: subdivision of digestive tract^c

urine^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0001088

has super-classes: excreta^c

value specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001933

has super-classes: information content entity^c
has sub-classes: scalar value specification^c
is in domain of: has specified numeric value^dp, has specified value^dp
is in range of: has value specification^op

Veillonella^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_29465

has super-classes: Veillonellaceae^c; microbe susceptibly depleted in oral cavity of human with disease^op some rheumatoid arthritis^c; microbe susceptibly depleted in gut of human with disease^op some rheumatoid arthritis^c

Veillonellaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_31977

has super-classes: Negativicutes^c
has sub-classes: Dialister^c, Veillonella^c

Verrucomicrobia^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_74201

has super-classes: PVC group^c
has sub-classes: Akkermansia^c

Vertebrata <Metazoa>^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7742

has super-classes: Bilateria^c
has sub-classes: Euteleostomi^c

Vibrio^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_662

has super-classes: Vibrionaceae^c

Vibrionaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_641

has super-classes: Gammaproteobacteria^c
has sub-classes: Photobacterium^c, Vibrio^c

viral microbiome^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OHMI_0000007

has super-classes: microbiome^c

Viruses^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10239

has super-classes: microbe^c; has quality^op some invisible to unaided eye^c
has sub-classes: Hepacivirus C^c, Hepatitis B virus^c, Human immunodeficiency virus^c

whole genome sequencing assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0002117

has super-classes: DNA sequencing assay^c

Xenopus <genus>^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_8353

has super-classes: Anura^c

Yersinia^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_629

has super-classes: Yersiniaceae^c

Yersinia enterocolitica^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_630

has super-classes: Yersiniaceae^c

Yersiniaceae^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1903411

has super-classes: Enterobacterales^c
has sub-classes: Serratia^c, Yersinia^c, Yersinia enterocolitica^c

zone of skin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000014

has super-classes: organ part^c

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni.

OHMI: Ontology of Host-Microbiome Interactions

Table of Content

Introduction

Classes

'depletion of Bacteroides in colorectal cancer human gut'c back to ToC or Class ToC

'depletion of L. reuteri in colorectal cancer human gut'c back to ToC or Class ToC

[Clostridium] asparagiformec back to ToC or Class ToC

[Clostridium] clostridioformec back to ToC or Class ToC

[Clostridium] hiranonisc back to ToC or Class ToC

[Clostridium] hylemonaec back to ToC or Class ToC

[Clostridium] scindensc back to ToC or Class ToC

[Haemophilus] ducreyic back to ToC or Class ToC

abnormal phenotypec back to ToC or Class ToC

Acetanaerobacteriumc back to ToC or Class ToC

Acidaminobacterc back to ToC or Class ToC

Acidovoraxc back to ToC or Class ToC

Acinetobacterc back to ToC or Class ToC

Actinobacteria <class>c back to ToC or Class ToC

Actinobacteria <phylum>c back to ToC or Class ToC

Actinobacteria<class> depletion in arthritis mouse gutc back to ToC or Class ToC

Actinomycesc back to ToC or Class ToC

action specificationc back to ToC or Class ToC

agec back to ToC or Class ToC

Aggregatibacterc back to ToC or Class ToC

Aggregatibacter actinomycetemcomitansc back to ToC or Class ToC

Akkermansiac back to ToC or Class ToC

Akkermansia muciniphilac back to ToC or Class ToC

Akkermansia muciniphila depletion in AS rat gutc back to ToC or Class ToC

Alistipesc back to ToC or Class ToC

Alistipes putredinisc back to ToC or Class ToC

alpha diversityc back to ToC or Class ToC

Amniotac back to ToC or Class ToC

Anaerolineaceaec back to ToC or Class ToC

Anaerolineaec back to ToC or Class ToC

Anaerolinealesc back to ToC or Class ToC

Anaerotruncusc back to ToC or Class ToC

Anaerovoraxc back to ToC or Class ToC

analyte rolec back to ToC or Class ToC

anatomical clusterc back to ToC or Class ToC

anatomical entityc back to ToC or Class ToC

anatomical structurec back to ToC or Class ToC

ankylosing spondylitisc back to ToC or Class ToC

Anoxybacillusc back to ToC or Class ToC

antibiotics reducing colonization resistance against C. difficile in human gutc back to ToC or Class ToC

Anurac back to ToC or Class ToC

Arabidopsis thalianac back to ToC or Class ToC

Archaeac back to ToC or Class ToC

arthritisc back to ToC or Class ToC

arthritis mouse-gut microbiome interactionc back to ToC or Class ToC

arthritis rat-gut microbiome interactionc back to ToC or Class ToC

AS human oral cavity microbiome interactionc back to ToC or Class ToC

AS human-gut microbiome interactionc back to ToC or Class ToC

AS rat-gut microbiome interactionc back to ToC or Class ToC

Ascomycotac back to ToC or Class ToC

assayc back to ToC or Class ToC

assay objectivec back to ToC or Class ToC

atomc back to ToC or Class ToC

Atopobiumc back to ToC or Class ToC

Atopobium parvulumc back to ToC or Class ToC

Atopobium sp.c back to ToC or Class ToC

autoimmune disease of musculoskeletal systemc back to ToC or Class ToC

autoimmune hypersensitivity diseasec back to ToC or Class ToC

Bacillaceaec back to ToC or Class ToC

Bacillic back to ToC or Class ToC

Bacteriac back to ToC or Class ToC

bacterial microbiomec back to ToC or Class ToC

Bacteroidaceaec back to ToC or Class ToC

Bacteroidalesc back to ToC or Class ToC

Bacteroidesc back to ToC or Class ToC

Bacteroides caccaec back to ToC or Class ToC

Bacteroides depletion in arthritis mouse gutc back to ToC or Class ToC

Bacteroides finegoldiic back to ToC or Class ToC

Bacteroides fragilisc back to ToC or Class ToC

Bacteroides intestinalisc back to ToC or Class ToC

Bacteroides ovatusc back to ToC or Class ToC

Bacteroides plebeiusc back to ToC or Class ToC

Bacteroides sp.c back to ToC or Class ToC

Bacteroides uniformisc back to ToC or Class ToC

Bacteroides vulgatusc back to ToC or Class ToC

Bacteroides xylanisolvensc back to ToC or Class ToC

'depletion of Bacteroides in colorectal cancer human gut'^c back to ToC or Class ToC

'depletion of L. reuteri in colorectal cancer human gut'^c back to ToC or Class ToC

[Clostridium] asparagiforme^c back to ToC or Class ToC

[Clostridium] clostridioforme^c back to ToC or Class ToC

[Clostridium] hiranonis^c back to ToC or Class ToC

[Clostridium] hylemonae^c back to ToC or Class ToC

[Clostridium] scindens^c back to ToC or Class ToC

[Haemophilus] ducreyi^c back to ToC or Class ToC

abnormal phenotype^c back to ToC or Class ToC

Acetanaerobacterium^c back to ToC or Class ToC

Acidaminobacter^c back to ToC or Class ToC

Acidovorax^c back to ToC or Class ToC

Acinetobacter^c back to ToC or Class ToC

Actinobacteria <class>^c back to ToC or Class ToC

Actinobacteria <phylum>^c back to ToC or Class ToC

Actinobacteria<class> depletion in arthritis mouse gut^c back to ToC or Class ToC

Actinomyces^c back to ToC or Class ToC

action specification^c back to ToC or Class ToC

age^c back to ToC or Class ToC

Aggregatibacter^c back to ToC or Class ToC

Aggregatibacter actinomycetemcomitans^c back to ToC or Class ToC

Akkermansia^c back to ToC or Class ToC

Akkermansia muciniphila^c back to ToC or Class ToC

Akkermansia muciniphila depletion in AS rat gut^c back to ToC or Class ToC

Alistipes^c back to ToC or Class ToC

Alistipes putredinis^c back to ToC or Class ToC

alpha diversity^c back to ToC or Class ToC

Amniota^c back to ToC or Class ToC

Anaerolineaceae^c back to ToC or Class ToC

Anaerolineae^c back to ToC or Class ToC

Anaerolineales^c back to ToC or Class ToC

Anaerotruncus^c back to ToC or Class ToC

Anaerovorax^c back to ToC or Class ToC

analyte role^c back to ToC or Class ToC

anatomical cluster^c back to ToC or Class ToC

anatomical entity^c back to ToC or Class ToC

anatomical structure^c back to ToC or Class ToC

ankylosing spondylitis^c back to ToC or Class ToC

Anoxybacillus^c back to ToC or Class ToC

antibiotics reducing colonization resistance against C. difficile in human gut^c back to ToC or Class ToC

Anura^c back to ToC or Class ToC

Arabidopsis thaliana^c back to ToC or Class ToC

Archaea^c back to ToC or Class ToC

arthritis^c back to ToC or Class ToC

arthritis mouse-gut microbiome interaction^c back to ToC or Class ToC

arthritis rat-gut microbiome interaction^c back to ToC or Class ToC

AS human oral cavity microbiome interaction^c back to ToC or Class ToC

AS human-gut microbiome interaction^c back to ToC or Class ToC

AS rat-gut microbiome interaction^c back to ToC or Class ToC

Ascomycota^c back to ToC or Class ToC

assay^c back to ToC or Class ToC

assay objective^c back to ToC or Class ToC

atom^c back to ToC or Class ToC

Atopobium^c back to ToC or Class ToC

Atopobium parvulum^c back to ToC or Class ToC

Atopobium sp.^c back to ToC or Class ToC

autoimmune disease of musculoskeletal system^c back to ToC or Class ToC

autoimmune hypersensitivity disease^c back to ToC or Class ToC

Bacillaceae^c back to ToC or Class ToC

Bacilli^c back to ToC or Class ToC

Bacteria^c back to ToC or Class ToC

bacterial microbiome^c back to ToC or Class ToC

Bacteroidaceae^c back to ToC or Class ToC

Bacteroidales^c back to ToC or Class ToC

Bacteroides^c back to ToC or Class ToC

Bacteroides caccae^c back to ToC or Class ToC

Bacteroides depletion in arthritis mouse gut^c back to ToC or Class ToC

Bacteroides finegoldii^c back to ToC or Class ToC

Bacteroides fragilis^c back to ToC or Class ToC

Bacteroides intestinalis^c back to ToC or Class ToC

Bacteroides ovatus^c back to ToC or Class ToC

Bacteroides plebeius^c back to ToC or Class ToC

Bacteroides sp.^c back to ToC or Class ToC

Bacteroides uniformis^c back to ToC or Class ToC

Bacteroides vulgatus^c back to ToC or Class ToC

Bacteroides xylanisolvens^c back to ToC or Class ToC

Bacteroides xylanisolvens XB1A^c back to ToC or Class ToC

Bacteroidetes^c back to ToC or Class ToC

Bacteroidia^c back to ToC or Class ToC

Badula fragilis^c back to ToC or Class ToC