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OBO Metadata Ontology

Metadata

URI
http://purl.obolibrary.org/obo/omo.owl
Contributor(s)
Adam Goldstein
Alan Ruttenberg
Albert Goldfain
Barry Smith
Bjoern Peters
Carlo Torniai
Chris Mungall
Chris Stoeckert
Christian A. Boelling
Darren Natale
David Osumi-Sutherland
Gwen Frishkoff
Holger Stenzhorn
James A. Overton
James Malone
Jennifer Fostel
Jie Zheng
Jonathan Rees
Larisa Soldatova
Lawrence Hunter
Mathias Brochhausen
Matt Brush
Melanie Courtot
Michel Dumontier
Paolo Ciccarese
Pat Hayes
Philippe Rocca-Serra
Randy Dipert
Ron Rudnicki
Satya Sahoo
Sivaram Arabandi
Werner Ceusters
William Duncan
William Hogan
Yongqun (Oliver) He
Version URI
http://purl.obolibrary.org/obo/omo/2020-06-08/omo.owl
License
https://creativecommons.org/publicdomain/zero/1.0/
Ontology RDF
RDF (turtle)

Description

An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO).

Table of Contents

  1. Classes
  2. Annotation Properties
  3. Named Individuals
  4. Namespaces
  5. Legend

Overview

Pictures say 1,000 words
Figure 1: Ontology overview

Classes ↑

BFO_0000031c # Classes

URI http://purl.obolibrary.org/obo/BFO_0000031
Sub-classes obo:IAO_0000030c

data itemc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000027
Super-classes obo:IAO_0000030c
Sub-classes obo:IAO_0000102c

information content entityc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000030
Super-classes obo:BFO_0000031c
Sub-classes obo:IAO_0000027c

curation status specificationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000078
Super-classes obo:IAO_0000102c
Members obo:IAO_0000123
obo:IAO_0000121
obo:IAO_0000428
obo:IAO_0000125
obo:IAO_0000002
obo:IAO_0000122
obo:IAO_0000423
obo:IAO_0000124
obo:IAO_0000120

data about an ontology partc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000102
Super-classes obo:IAO_0000027c
Sub-classes obo:IAO_0000409c
obo:IAO_8000000c
obo:IAO_0000078c
obo:IAO_0000225c

obsolescence reason specificationc # Classes

URI http://purl.obolibrary.org/obo/IAO_0000225
Super-classes obo:IAO_0000102c
Members obo:IAO_0000228
obo:IAO_0000229
obo:IAO_0000226
obo:IAO_0000227
obo:IAO_0000103

denotator typec # Classes

URI http://purl.obolibrary.org/obo/IAO_0000409
Super-classes obo:IAO_0000102c
Members obo:IAO_0000420
obo:IAO_0000421
obo:IAO_0000410

ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000000
Super-classes obo:IAO_0000102c
Sub-classes obo:IAO_8000013c
obo:IAO_8000006c
obo:IAO_8000014c
obo:IAO_8000003c
obo:IAO_8000002c
obo:IAO_8000001c
obo:IAO_8000004c

base ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000001
Super-classes obo:IAO_8000000c

editors ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000002
Super-classes obo:IAO_8000000c

main release ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000003
Super-classes obo:IAO_8000000c

bridge ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000004
Super-classes obo:IAO_8000000c
Sub-classes obo:IAO_8000016c

import ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000005
Super-classes obo:IAO_8000006c
Sub-classes obo:IAO_8000011c

subset ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000006
Super-classes obo:IAO_8000000c
Sub-classes obo:IAO_8000007c
obo:IAO_8000017c
obo:IAO_8000010c
obo:IAO_8000012c
obo:IAO_8000009c
obo:IAO_8000005c
obo:IAO_8000008c

curation subset ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000007
Super-classes obo:IAO_8000006c

analysis subset ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000008
Super-classes obo:IAO_8000006c

single layer subset ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000009
Super-classes obo:IAO_8000006c

exclusion subset ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000010
Super-classes obo:IAO_8000006c

external import ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000011
Super-classes obo:IAO_8000005c

species subset ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000012
Super-classes obo:IAO_8000006c

reasoned ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000013
Super-classes obo:IAO_8000000c

generated ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000014
Super-classes obo:IAO_8000000c
Sub-classes obo:IAO_8000015c

template generated ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000015
Super-classes obo:IAO_8000014c

taxonomic bridge ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000016
Super-classes obo:IAO_8000004c

ontology module subsetted by expressivityc # Classes

URI http://purl.obolibrary.org/obo/IAO_8000017
Super-classes obo:IAO_8000006c
Sub-classes obo:IAO_8000018c
obo:IAO_8000019c

obo basic subset ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000018
Super-classes obo:IAO_8000017c

ontology module subsetted by OWL profilec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000019
Super-classes obo:IAO_8000017c
Sub-classes obo:IAO_8000020c

EL++ ontology modulec # Classes

URI http://purl.obolibrary.org/obo/IAO_8000020
Super-classes obo:IAO_8000019c

Annotation Properties ↑

defaultLanguageap # APs

URI http://protege.stanford.edu/plugins/owl/protege#defaultLanguage

editor preferred termap # APs

URI http://purl.obolibrary.org/obo/IAO_0000111

example of usageap # APs

URI http://purl.obolibrary.org/obo/IAO_0000112

in branchap # APs

URI http://purl.obolibrary.org/obo/IAO_0000113

has curation statusap # APs

URI http://purl.obolibrary.org/obo/IAO_0000114

definitionap # APs

URI http://purl.obolibrary.org/obo/IAO_0000115

editor noteap # APs

URI http://purl.obolibrary.org/obo/IAO_0000116

term editorap # APs

URI http://purl.obolibrary.org/obo/IAO_0000117

alternative termap # APs

URI http://purl.obolibrary.org/obo/IAO_0000118

definition sourceap # APs

URI http://purl.obolibrary.org/obo/IAO_0000119

has obsolescence reasonap # APs

URI http://purl.obolibrary.org/obo/IAO_0000231

curator noteap # APs

URI http://purl.obolibrary.org/obo/IAO_0000232

term tracker itemap # APs

URI http://purl.obolibrary.org/obo/IAO_0000233
Description

The 'tracker item' can associate a tracker with a specific ontology term.

ontology term requesterap # APs

URI http://purl.obolibrary.org/obo/IAO_0000234
Description

The 'term requester' can credit the person, organization or project who request the ontology term.

is denotator typeap # APs

URI http://purl.obolibrary.org/obo/IAO_0000411

imported fromap # APs

URI http://purl.obolibrary.org/obo/IAO_0000412

expand expression toap # APs

URI http://purl.obolibrary.org/obo/IAO_0000424

expand assertion toap # APs

URI http://purl.obolibrary.org/obo/IAO_0000425

first order logic expressionap # APs

URI http://purl.obolibrary.org/obo/IAO_0000426

antisymmetric propertyap # APs

URI http://purl.obolibrary.org/obo/IAO_0000427

OBO foundry unique labelap # APs

URI http://purl.obolibrary.org/obo/IAO_0000589

has ID digit countap # APs

URI http://purl.obolibrary.org/obo/IAO_0000596

has ID range allocated toap # APs

URI http://purl.obolibrary.org/obo/IAO_0000597

has ID policy forap # APs

URI http://purl.obolibrary.org/obo/IAO_0000598

has ID prefixap # APs

URI http://purl.obolibrary.org/obo/IAO_0000599

elucidationap # APs

URI http://purl.obolibrary.org/obo/IAO_0000600

has associated axiom(nl)ap # APs

URI http://purl.obolibrary.org/obo/IAO_0000601

has associated axiom(fol)ap # APs

URI http://purl.obolibrary.org/obo/IAO_0000602

is allocated id rangeap # APs

URI http://purl.obolibrary.org/obo/IAO_0000603
Description

Add as annotation triples in the granting ontology

has ontology root termap # APs

URI http://purl.obolibrary.org/obo/IAO_0000700

may be identical toap # APs

URI http://purl.obolibrary.org/obo/IAO_0006011
Description

Edges asserting this should be annotated with to record evidence supporting the assertion and its provenance.

scheduled for obsoletion on or afterap # APs

URI http://purl.obolibrary.org/obo/IAO_0006012
Range(s) xsd:dateTimec

has axiom labelap # APs

URI http://purl.obolibrary.org/obo/IAO_0010000

term replaced byap # APs

URI http://purl.obolibrary.org/obo/IAO_0100001
Description

Add as annotation triples in the granting ontology

contributorap # APs

URI http://purl.org/dc/elements/1.1/contributor

coverageap # APs

URI http://purl.org/dc/elements/1.1/coverage

creatorap # APs

URI http://purl.org/dc/elements/1.1/creator

dateap # APs

URI http://purl.org/dc/elements/1.1/date

descriptionap # APs

URI http://purl.org/dc/elements/1.1/description

formatap # APs

URI http://purl.org/dc/elements/1.1/format

identifierap # APs

URI http://purl.org/dc/elements/1.1/identifier

languageap # APs

URI http://purl.org/dc/elements/1.1/language

publisherap # APs

URI http://purl.org/dc/elements/1.1/publisher

relationap # APs

URI http://purl.org/dc/elements/1.1/relation

rightsap # APs

URI http://purl.org/dc/elements/1.1/rights

sourceap # APs

URI http://purl.org/dc/elements/1.1/source

subjectap # APs

URI http://purl.org/dc/elements/1.1/subject

titleap # APs

URI http://purl.org/dc/elements/1.1/title

typeap # APs

URI http://purl.org/dc/elements/1.1/type

licenseap # APs

URI http://purl.org/dc/terms/license

created_byap # APs

URI http://www.geneontology.org/formats/oboInOwl#created_by

creation_dateap # APs

URI http://www.geneontology.org/formats/oboInOwl#creation_date

Named Individuals ↑

example to be eventually removedni

Class(es)
obo:IAO_0000078
URI http://purl.obolibrary.org/obo/IAO_0000002

failed exploratory termni

Class(es)
obo:IAO_0000225
URI http://purl.obolibrary.org/obo/IAO_0000103

metadata completeni

Class(es)
obo:IAO_0000078
URI http://purl.obolibrary.org/obo/IAO_0000120

organizational termni

Class(es)
obo:IAO_0000078
URI http://purl.obolibrary.org/obo/IAO_0000121

ready for releaseni

Class(es)
obo:IAO_0000078
URI http://purl.obolibrary.org/obo/IAO_0000122

metadata incompleteni

Class(es)
obo:IAO_0000078
URI http://purl.obolibrary.org/obo/IAO_0000123

uncuratedni

Class(es)
obo:IAO_0000078
URI http://purl.obolibrary.org/obo/IAO_0000124

pending final vettingni

Class(es)
obo:IAO_0000078
URI http://purl.obolibrary.org/obo/IAO_0000125

obsolete_coreni

URI http://purl.obolibrary.org/obo/IAO_0000224

placeholder removedni

Class(es)
obo:IAO_0000225
URI http://purl.obolibrary.org/obo/IAO_0000226

terms mergedni

Class(es)
obo:IAO_0000225
URI http://purl.obolibrary.org/obo/IAO_0000227

term importedni

Class(es)
obo:IAO_0000225
URI http://purl.obolibrary.org/obo/IAO_0000228

term splitni

Class(es)
obo:IAO_0000225
URI http://purl.obolibrary.org/obo/IAO_0000229

universalni

Class(es)
obo:IAO_0000409
URI http://purl.obolibrary.org/obo/IAO_0000410

defined classni

Class(es)
obo:IAO_0000409
URI http://purl.obolibrary.org/obo/IAO_0000420

named class expressionni

Class(es)
obo:IAO_0000409
URI http://purl.obolibrary.org/obo/IAO_0000421

to be replaced with external ontology termni

Class(es)
obo:IAO_0000078
URI http://purl.obolibrary.org/obo/IAO_0000423

requires discussionni

Class(es)
obo:IAO_0000078
URI http://purl.obolibrary.org/obo/IAO_0000428

Namespaces ↑

default (:)
http://purl.obolibrary.org/obo/omo.owl
dc
http://purl.org/dc/elements/1.1/
obo
http://purl.obolibrary.org/obo/
oboInOwl
http://www.geneontology.org/formats/oboInOwl#
owl
http://www.w3.org/2002/07/owl#
protege
http://protege.stanford.edu/plugins/owl/protege#
prov
http://www.w3.org/ns/prov#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
sdo
https://schema.org/
skos
http://www.w3.org/2004/02/skos/core#
terms
http://purl.org/dc/terms/
xsd
http://www.w3.org/2001/XMLSchema#

Legend

cClasses
opObject Properties
fpFunctional Properties
dpData Properties
dpAnnotation Properties
pProperties
niNamed Individuals