OBO Metadata Ontology

IRI:
http://purl.obolibrary.org/obo/omo.owl
Version IRI:
http://purl.obolibrary.org/obo/omo/releases/2023-06-09/omo.owl
Current version :
2023-06-09
Contributors :
Adam Goldstein
Alan Ruttenberg
Albert Goldfain
Barry Smith
Bjoern Peters
Carlo Torniai
Chris Mungall
Chris Stoeckert
Christian A. Boelling
Darren Natale
David Osumi-Sutherland
Gwen Frishkoff
Holger Stenzhorn
James A. Overton
James Malone
Jennifer Fostel
Jie Zheng
Jonathan Rees
Larisa Soldatova
Lawrence Hunter
Mathias Brochhausen
Matt Brush
Melanie Courtot
Michel Dumontier
Paolo Ciccarese
Pat Hayes
Philippe Rocca-Serra
Randy Dipert
Ron Rudnicki
Satya Sahoo
Sivaram Arabandi
Werner Ceusters
William Duncan
William Hogan
Yongqun (Oliver) He
Other visualisation :
Ontology source - WebVowl

Table of Content

  1. Introduction
  2. Classes
  3. Named Individuals
  4. Annotation Properties
  5. Namespace Declarations

Introduction

An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO).

Classes

analysis subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000008

has super-classes
subset ontology modulec

base ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000001

has super-classes
ontology modulec

bridge ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000004

has super-classes
ontology modulec
has sub-classes
taxonomic bridge ontology modulec

curation status specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000078

is equivalent to
{ example to be eventually removed , metadata complete , organizational term , ready for release , metadata incomplete , uncurated , pending final vetting , to be replaced with external ontology term , requires discussion }
has super-classes
data about an ontology partc
has members
example to be eventually removedni, metadata completeni, metadata incompleteni, organizational termni, pending final vettingni, ready for releaseni, requires discussionni, to be replaced with external ontology termni, uncuratedni

curation subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000007

has super-classes
subset ontology modulec

data about an ontology partc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000102

has super-classes
data itemc
has sub-classes
curation status specificationc, denotator typec, obsolescence reason specificationc, ontology modulec

data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000027

has super-classes
information content entityc
has sub-classes
data about an ontology partc

denotator typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000409

is equivalent to
{ universal , defined class , named class expression }
has super-classes
data about an ontology partc
has members
defined classni, named class expressionni, universalni

editors ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000002

has super-classes
ontology modulec

EL++ ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000020

has super-classes
ontology module subsetted by OWL profilec

exclusion subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000010

has super-classes
subset ontology modulec

external import ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000011

has super-classes
import ontology modulec

generated ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000014

has super-classes
ontology modulec
has sub-classes
template generated ontology modulec

import ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000005

has super-classes
subset ontology modulec
has sub-classes
external import ontology modulec

information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000030

has super-classes
b f o 0000031c
has sub-classes
data itemc

main release ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000003

has super-classes
ontology modulec

obo basic subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000018

has super-classes
ontology module subsetted by expressivityc

obsolescence reason specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000225

is equivalent to
{ failed exploratory term , placeholder removed , terms merged , term imported , term split , out of scope }
has super-classes
data about an ontology partc
has members
failed exploratory termni, out of scopeni, placeholder removedni, term importedni, term splitni, terms mergedni

ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000000

has super-classes
data about an ontology partc
has sub-classes
base ontology modulec, bridge ontology modulec, editors ontology modulec, generated ontology modulec, main release ontology modulec, reasoned ontology modulec, subset ontology modulec

ontology module subsetted by expressivityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000017

has super-classes
subset ontology modulec
has sub-classes
obo basic subset ontology modulec, ontology module subsetted by OWL profilec

ontology module subsetted by OWL profilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000019

has super-classes
ontology module subsetted by expressivityc
has sub-classes
EL++ ontology modulec

reasoned ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000013

has super-classes
ontology modulec

single layer subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000009

has super-classes
subset ontology modulec

species subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000012

has super-classes
subset ontology modulec

subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000006

has super-classes
ontology modulec
has sub-classes
analysis subset ontology modulec, curation subset ontology modulec, exclusion subset ontology modulec, import ontology modulec, ontology module subsetted by expressivityc, single layer subset ontology modulec, species subset ontology modulec

taxonomic bridge ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000016

has super-classes
bridge ontology modulec

template generated ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000015

has super-classes
generated ontology modulec

Named Individuals

defined classni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000420

belongs to
denotator typec

example to be eventually removedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000002

belongs to
curation status specificationc

failed exploratory termni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000103

belongs to
obsolescence reason specificationc

metadata completeni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000120

belongs to
curation status specificationc

metadata incompleteni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000123

belongs to
curation status specificationc

named class expressionni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000421

belongs to
denotator typec

obsolete_coreni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000224

organizational termni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000121

belongs to
curation status specificationc

out of scopeni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/OMO_0001000

belongs to
obsolescence reason specificationc

pending final vettingni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000125

belongs to
curation status specificationc

placeholder removedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000226

belongs to
obsolescence reason specificationc

ready for releaseni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000122

belongs to
curation status specificationc

requires discussionni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000428

belongs to
curation status specificationc

term importedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000228

belongs to
obsolescence reason specificationc

term splitni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000229

belongs to
obsolescence reason specificationc

terms mergedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000227

belongs to
obsolescence reason specificationc

to be replaced with external ontology termni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000423

belongs to
curation status specificationc

uncuratedni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000124

belongs to
curation status specificationc

universalni back to ToC or Named Individual ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000410

belongs to
denotator typec

Annotation Properties

abbreviationap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/OMO_0003000

has super-properties
synonym typeap

alternative labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000118

Consider re-defing to: An alternative name for a class or property which can mean the same thing as the preferred name (semantically equivalent, narrow, broad or related).
has sub-properties
has broad synonymap, has exact synonymap, has narrow synonymap, has related synonymap

ambiguous synonymap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/OMO_0003001

has super-properties
synonym typeap

antisymmetric propertyap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000427

has super-properties
logical characteristic of object propertyap

contributorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/contributor

contributorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/contributor

coverageap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/coverage

createdap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/created

created byap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#created_by

creation dateap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#creation_date

creatorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/creator

curator noteap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000232

dateap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/date

default languageap back to ToC or Annotation Property ToC

IRI: http://protege.stanford.edu/plugins/owl/protege#defaultLanguage

defined by constructap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/OMO_0002000

Contributors :
https://orcid.org/0000-0002-7356-1779
https://orcid.org/0000-0002-8688-6599

definitionap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000115

definition sourceap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000119

descriptionap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/description

dubious synonymap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/OMO_0003002

has super-properties
synonym typeap

editor noteap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000116

editor preferred termap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000111

elucidationap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000600

example of usageap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000112

expand assertion toap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000425

expand expression toap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000424

first order logic expressionap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000426

formatap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/format

has associated axiom(fol)ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000602

has associated axiom(nl)ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000601

has axiom labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0010000

has broad synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym

has super-properties
alternative labelap

has curation statusap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000114

has exact synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasExactSynonym

has super-properties
alternative labelap

has ID digit countap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000596

has ID policy forap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000598

has ID prefixap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000599

has ID range allocated toap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000597

has narrow synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym

has super-properties
alternative labelap

has obsolescence reasonap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000231

has ontology root termap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000700

has related synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym

has super-properties
alternative labelap

identifierap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/identifier

imported fromap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000412

in branchap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000113

is allocated id rangeap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000603

Add as annotation triples in the granting ontology

is denotator typeap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000411

languageap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/language

layperson synonymap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/OMO_0003003

has super-properties
synonym typeap

licenseap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/license

logical characteristic of object propertyap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/OMO_0001001

has sub-properties
antisymmetric propertyap

may be identical toap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0006011

Edges asserting this should be annotated with to record evidence supporting the assertion and its provenance.

misnomerap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/OMO_0003007

has super-properties
synonym typeap

misspellingap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/OMO_0003006

has super-properties
synonym typeap

OBO foundry unique labelap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000589

ontology term requesterap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000234

The 'term requester' can credit the person, organization or project who request the ontology term.

plural formap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/OMO_0003004

has super-properties
synonym typeap

publisherap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/publisher

relationap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/relation

rightsap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/rights

scheduled for obsoletion on or afterap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0006012

has range
date time

sourceap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/source

subjectap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/subject

synonym typeap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#SynonymType

has sub-properties
UK spelling synonymap, abbreviationap, ambiguous synonymap, dubious synonymap, layperson synonymap, misnomerap, misspellingap, plural formap

term editorap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000117

term replaced byap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0100001

Add as annotation triples in the granting ontology

term tracker itemap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000233

The 'tracker item' can associate a tracker with a specific ontology term.

titleap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/title

typeap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/type

UK spelling synonymap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/OMO_0003005

has super-properties
synonym typeap

Namespace Declarations back to ToC

default namespace
http://purl.obolibrary.org/obo/omo.owl#
10-1186
https://doi.org/10.1186/
2023-06-09
http://purl.obolibrary.org/obo/omo/releases/2023-06-09/
dc
http://purl.org/dc/elements/1.1/
issues
https://github.com/ontodev/robot/issues/
obo
http://purl.obolibrary.org/obo/
obo-syntax-html
http://owlcollab.github.io/oboformat/doc/obo-syntax.html#
oboInOwl
http://www.geneontology.org/formats/oboInOwl#
orcid-org
http://orcid.org/
owl
http://www.w3.org/2002/07/owl#
page
http://www.geneontology.org/page/
protege
http://protege.stanford.edu/plugins/owl/protege#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
robot-obolibrary-org
http://robot.obolibrary.org/
terms
http://purl.org/dc/terms/
wiki
https://github.com/obophenotype/uberon/wiki/
xsd
http://www.w3.org/2001/XMLSchema#

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni .