IRI:
http://purl.obolibrary.org/obo/omp.owl
Version IRI:
http://purl.obolibrary.org/obo/omp/releases/2021-07-02/omp.owl
Other visualisation:
Ontology source

Abstract

select is_a closure

Table of Content

  1. Classes
  2. Object Properties
  3. Annotation Properties
  4. Namespace Declarations

Classes

1-D extentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001708

has super-classes
sizec
has sub-classes
lengthc, thicknessc

2-D shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002006

has super-classes
shapec
has sub-classes
superellipticc

3-D extentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001710

has super-classes
sizec
has sub-classes
volumec

3-D shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002266

has super-classes
shapec
has sub-classes
concave 3-D shapec, convex 3-D shapec

<new term>c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007949

has super-classes
cell population viability phenotypec

A22 antimicrobial agent resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007869

The original term and its children were deemed to be too granular and replaced with OMP:0000274 ! antimicrobial agent resistance phenotype and its child terms, which are listed below. When using one of these terms for annotation, enter a database identifier for the specific antimicrobial agent in the Annotation Extension field. OMP:0007876 resistant to an antimicrobial agent OMP:0007877 not resistant to an antimicrobial agent OMP:0007134 altered resistance to an antimicrobial agent OMP:0007878 increased resistance to an antimicrobial agent OMP:000 7879 decreased resistance to an antimicrobial agent OMP:0007880 abolished resistance to an antimicrobial agent

abnormalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000460

has super-classes
deviation(from_normal)c

abolished acid phosphatase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005178

has super-classes
absence of acid phosphatase activityc
decreased acid phosphatase activityc

abolished acid tolerance responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000382

has super-classes
absence of acid tolerance responsec
decreased acid tolerance responsec

abolished adhesionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005218

has super-classes
absence of adhesionc
decreased adhesionc

abolished adhesion to hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005211

has super-classes
absence of adhesion to hostc
decreased adhesion to hostc

abolished aerobic respirationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007180

has super-classes
absence of aerobic respirationc
decreased aerobic respirationc

abolished aerotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006098

has super-classes
absence of aerotaxisc
decreased aerotaxisc

abolished agar invasionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005331

has super-classes
absence of agar invasionc
decreased agar invasion phenotypec

abolished akinete formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007422

has super-classes
absence of akinete formationc
decreased akinete formationc

abolished alpha-1,3-mannosyltransferase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005204

has super-classes
absence of alpha-1,3-mannosyltransferase activityc
altered alpha-1,3-mannosyltransferase activityc

abolished amino acid requirementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007355

has super-classes
decreased amino acid requirementc

abolished anaerobic population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005195

has super-classes
absence of anaerobic population growthc
decreased anaerobic population growthc

abolished anaerobic respirationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007186

has super-classes
absence of anaerobic respirationc
decreased anaerobic respirationc

abolished antimicrobial peptide productionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006178

has super-classes
decreased antimicrobial peptide productionc
absence of antimicrobial peptide productionc

abolished apoptosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007331

has super-classes
decreased apoptosisc

abolished ascospore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007473

has super-classes
absence of ascospore formationc
decreased ascospore formationc

abolished asexual spore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007431

has super-classes
decreased asexual spore formationc

abolished autophagic vesicle formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007338

has super-classes
decreased autophagic vesicle formationc

abolished binary fissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006171

has super-classes
decreased binary fissionc
absence of binary fissionc

abolished biofilm formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006135

has super-classes
decreased biofilm formationc
absence of biofilm formationc

abolished buddingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006099

has super-classes
decreased buddingc
absence of buddingc

abolished caffeine resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006101

has super-classes
not resistant to caffeinec
decreased caffeine resistancec

abolished capsule formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006102

has super-classes
decreased amount of capsulec
absence of capsulec

abolished catalase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006104

has super-classes
decreased catalase activityc
catalase negativec

abolished cell fusionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005224

has super-classes
decreased cell fusionc

abolished cell fusion during matingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005232

has super-classes
decreased cell fusion during matingc

abolished cell growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007690

has super-classes
absence of cell growthc
decreased cell growthc

abolished cell lysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005341

has super-classes
decreased cell lysisc

abolished cell population viabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007704

has super-classes
decreased cell population viabilityc

abolished cell separation after cell division during vegetative growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007789

has super-classes
decreased frequency of cell separation after cell division during vegetative growthc
absence of cell separation after cell division during vegetative growthc

abolished cell size variability within a cell populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007925

has super-classes
absence of cell size variability within a cell populationc
decreased cell size variability within a cell populationc

abolished cell viabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007391

has super-classes
decreased cell viabilityc

abolished cell wall protein levelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007640

has super-classes
decreased cell wall protein levelc

abolished cell-cell self recognitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000389

has super-classes
decreased cell-cell self recognitionc

abolished cellular reactive oxygen speciesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007663

has super-classes
decreased level of cellular reactive oxygen speciesc

abolished chemical resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007883

has super-classes
decreased resistance to a chemicalc

abolished chemical sensitivityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007251

Chemical sensitivity phenotype and its child terms were renamed as chemical resistance phenotypes to be consistent with other branches of OMP. Other terms in this branch were redefined, but this term was made obsolete and replaced by OMP:0007250 ! increased resistance to a chemical. When using OMP:0007250 for annotations enter the database identifier for the specific chemical in the Annotation Extension field.

abolished chemotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006108

has super-classes
absence of chemotaxisc
decreased chemotaxisc

abolished chitin in cell wallc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007629

has super-classes
decreased cell wall chitin levelc

abolished chromosome segregationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006111

has super-classes
decreased frequency of chromosome missegregationc
absence of chromosome segregationc

abolished colonization of a hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007258

has super-classes
absence of colonization of a hostc
decreased colonization of a hostc

abolished colonization of host tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005287

has super-classes
absence of colonization of host tissuec
decreased colonization of host tissuec

abolished colonization of mouse tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005301

has super-classes
absence of colonization of mouse tissuec
decreased colonization of mouse tissuec

abolished colonization of rabbit tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005315

has super-classes
absence of colonization of rabbit tissuec
decreased colonization of rabbit tissuec

abolished colonization of tissue in an immunocompromised hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005294

has super-classes
absence of colonization of tissue in an immunocompromised hostc
decreased colonization of tissue in an immunocompromised hostc

abolished colonization of tissue in an immunocompromised mousec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005308

has super-classes
decreased colonization of tissue in an immunocompromised mousec

abolished colonization of tissue in an immunocompromised rabbitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005322

has super-classes
decreased colonization of tissue in an immunocompromised rabbitc

abolished conjugationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007419

has super-classes
decreased conjugationc

abolished cytoskeleton morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005187

abolished decarboxylase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006094

has super-classes
decarboxylase negativec
decreased decarboxylase activityc

abolished diazonium blue B stainingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007303

has super-classes
absence of diazonium blue B stainingc
decreased diazonium blue B stainingc

abolished DNA breaksc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007608

has super-classes
absence of DNA breaksc
decreased frequency of DNA breaksc

abolished drug-dependence of population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007270

has super-classes
absence of drug-dependent population growthc
decreased drug-dependence of population growthc

abolished endocytosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005265

has super-classes
decreased endocytosisc
absence of endocytosisc

abolished endospore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006110

is equivalent to
decreased endospore formationc and (has_qualityop some absentc)
has super-classes
decreased endospore formationc
absence of endospore formationc
has_qualityop some absentc

abolished enzymatic activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006095

has super-classes
decreased catalytic activityc
absence of enzymatic activityc

abolished ferric reductase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007318

has super-classes
absence of ferric reductase activityc
decreased ferric reductase activityc

abolished filamentous growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005247

has super-classes
decreased filamentous growthc

abolished flagellac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006131

has super-classes
absence of flagellumc
decreased number of flagellac

abolished flocculationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007468

has super-classes
absence of flocculationc
decreased flocculationc

abolished fosfomycin resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007861

has super-classes
absence of fosfomycin resistancec
decreased resistance to fosfomycinc

abolished gene expressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006115

has super-classes
decreased gene expressionc

abolished gene silencingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006112

has super-classes
decreased frequency of gene silencingc
absence of gene silencingc

abolished haploid fruitingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007548

has super-classes
absence of haploid fruitingc
decreased haploid fruitingc

abolished heme utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007089

has super-classes
decreased heme utilizationc
absence of heme utilizationc

abolished hemolysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006119

has super-classes
absence of hemolysisc
decreased hemolysisc

abolished heterocyst formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006120

has super-classes
absence of heterocystsc
decreased heterocyst formationc

abolished Holliday junction structuresc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007623

has super-classes
decreased frequency of Holliday junction structuresc

abolished homologous recombinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006113

has super-classes
decreased frequency of homologous recombinationc
absence of homologous recombinationc

abolished induced expression of the SOS responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006121

has super-classes
absence of an SOS responsec
decreased induced expression of the SOS responsec

abolished inorganic carbon source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007854

has super-classes
absence of inorganic carbon source utilizationc
decreased inorganic carbon source utilizationc

abolished internalization by macrophagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000375

has super-classes
decreased internalization by macrophagec

abolished laccase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007291

has super-classes
absence of laccase activityc
decreased laccase activityc

abolished lethalityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007399

has super-classes
absence of lethalityc
decreased lethalityc
has sub-classes
abolished lethality in immunocompromised micec, abolished lethality in micec

abolished lethality in an amoeba hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007532

has super-classes
absence of lethality in an amoeba hostc
decreased lethality in an amoeba hostc

abolished lethality in immunocompromised micec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007449

has super-classes
abolished lethalityc
decreased lethality in immunocompromised micec

abolished lethality in micec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007448

has super-classes
abolished lethalityc
decreased lethality in micec

abolished matingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005355

has super-classes
decreased matingc

abolished mating efficiencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005360

has super-classes
decreased mating efficiencyc

abolished meiosis Ic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007566

has super-classes
abolished meiotic nuclear divisionc

abolished meiosis IIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007567

has super-classes
abolished meiotic nuclear divisionc

abolished meiotic nuclear divisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007565

has super-classes
absence of meiotic nuclear divisionc
altered meiotic nuclear divisionc
has sub-classes
abolished meiosis Ic, abolished meiosis IIc

abolished mitotic recombinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006123

has super-classes
decreased mitotic recombinationc

abolished motilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007000

is equivalent to
decreased motilityc and (has_qualityop some absentc)
has super-classes
decreased motilityc
absence of motilityc
has_qualityop some absentc
has sub-classes
abolished motility by glidingc, abolished motility by swarmingc, abolished motility by swimmingc, abolished motility by twitchingc

abolished motility by glidingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007150

has super-classes
abolished motilityc
decreased motility by glidingc
absence of motility by glidingc

abolished motility by swarmingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006167

has super-classes
abolished motilityc
decreased motility by swarmingc
absence of motility by swarmingc

abolished motility by swimmingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006100

has super-classes
abolished motilityc
decreased motility by swimmingc
absence of motility by swimmingc

abolished motility by twitchingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007494

has super-classes
abolished motilityc
decreased motility by twitchingc
absence of motility by twitchingc

abolished mucoidyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007324

has super-classes
absence of mucoid coloniesc
decreased mucoidyc

abolished multiple fissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006177

has super-classes
decreased multiple fissionc
absence of multiple fissionc

abolished mutation frequencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006124

This term was made obsolete because it describes a phenotype that is unlikely to occur in nature.

abolished myxospore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006125

is equivalent to
decreased myxospore formationc and (has_qualityop some absentc)
has super-classes
absence of myxospore formationc
decreased myxospore formationc
has_qualityop some absentc

abolished natural competencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008041

has super-classes
absence of natural competencec
decreased natural competencec

abolished negative DNA supercoilingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006127

has super-classes
decreased negative supercoilingc
absence of negative supercoilingc

abolished negative osmotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005368

has super-classes
absence of negative osmotaxisc
decreased negative osmotaxisc

abolished number of pilic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006132

has super-classes
decreased number of pilic
absence of pilusc

abolished nutrient importc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007017

has super-classes
decreased nutrient importc

abolished organic carbon source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006103

has super-classes
decreased organic carbon source utilizationc
absence of organic carbon source utilizationc

abolished osmotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005366

has super-classes
absence of osmotaxisc
decreased osmotaxisc

abolished outer membrane vesiclec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006160

has super-classes
absence of outer membrane vesiclesc
decreased outer membrane vesicle productionc

abolished oxidase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006096

has super-classes
oxidase negativec
decreased oxidase activityc

abolished phospholipase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005110

has super-classes
absence of phospholipase activityc
decreased phospholipase activityc

abolished population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007599

has super-classes
decreased population growthc

abolished population growth at acidic pHc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006116

has super-classes
decreased population growth at acidic pHc

abolished population growth at alkaline pHc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006117

has super-classes
decreased population growth at alkaline pHc

abolished population growth at high temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007955

has super-classes
decreased population growth at high temperaturec

abolished population growth at low temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007961

has super-classes
absence of population growth at low temperaturec
decreased population growth at low temperaturec

abolished population growth during nutrient limitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007968

has super-classes
absence of cell population growth during nutrient limitationc
decreased cell population growth during nutrient limitationc

abolished population growth in high osmolarityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007522

has super-classes
absence of population growth in high osmolarityc
decreased population growth in high osmolarityc

abolished population growth on defined mediumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007777

has super-classes
decreased population growth on defined mediumc

abolished positive DNA supercoilingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006128

has super-classes
absence of positive supercoilingc
decreased positive supercoilingc

abolished positive osmotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005370

has super-classes
absence of positive osmotaxisc
decreased positive osmotaxisc

abolished protein kinase A activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007317

has super-classes
absence of protein kinase A activityc
decreased protein kinase A activityc

abolished protein secretionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007350

has super-classes
decreased protein secretionc

abolished purine requirementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006133

has super-classes
decreased purine requirementc

abolished pyrimidine requirementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007390

has super-classes
decreased pyrimidine requirementc

abolished quorum sensingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006134

has super-classes
absence of quorum sensingc
decreased quorum sensingc

abolished resistance to a chelatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007914

has super-classes
not resistant to a chelatorc
decreased resistance to a chelatorc

abolished resistance to a metalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007887

has super-classes
not resistant to a metalc
decreased resistance to a metalc

abolished resistance to a nucleosidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007364

has super-classes
not resistant to a nucleosidec
decreased resistance to a nucleosidec

abolished resistance to a surfactantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007897

has super-classes
not resistant to a surfactantc
decreased resistance to a surfactantc

abolished resistance to a urea derivativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007539

The original term was deemed to be too granular and were replaced with OMP:0007883 ! abolished resistance to a chemical. When using this term for annotation, enter a database identifier for the specific chemical in the Annotation Extension field.

abolished resistance to A22c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007874

The original term was deemed to be too granular. In its place, use OMP:0007880 abolished resistance to an antimicrobial agent. When using OMP:0007880 for annotation, enter a database identifier for the specific antimicrobial agent in the Annotation Extension field.

abolished resistance to acidic pH stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005127

has super-classes
decreased resistance to acidic pH stressc

abolished resistance to alkaline pH stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005128

has super-classes
decreased resistance to alkaline pH stressc

abolished resistance to alkylating agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007378

has super-classes
not resistant to alkylating agentc
decreased resistance to alkylating agentc

abolished resistance to aminoglycosidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006137

has super-classes
decreased resistance to aminoglycosidec
not resistant to aminoglycosidec

abolished resistance to aminopyrimidinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006138

has super-classes
decreased resistance to aminopyrimidinec
not resistant to aminopyrimidinec

abolished resistance to an acridinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007371

has super-classes
not resistant to an acridinec
decreased resistance to an acridinec

abolished resistance to an antimicrobial agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007880

has super-classes
not resistant to an antimicrobial agentc
decreased resistance to an antimicrobial agentc

abolished resistance to an epoxidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007501

has super-classes
not resistant to an epoxidec
decreased resistance to an epoxidec

abolished resistance to azolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006139

has super-classes
decreased resistance to azolec
not resistant to azolec

abolished resistance to bacteriocinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006140

has super-classes
decreased resistance to bacteriocinc
not resistant to bacteriocinc

abolished resistance to benzamidesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007386

has super-classes
decreased resistance benzamidesc

abolished resistance to beta-lactamc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006141

has super-classes
decreased resistance to beta-lactamc
not resistant to beta-lactamc

abolished resistance to bicyclomycinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007867

The original term was deemed to be too granular. In its place, use OMP:0007880 abolished resistance to an antimicrobial agent. When using OMP:0007880 for annotation, enter a database identifier for the specific antimicrobial agent in the Annotation Extension field.

abolished resistance to bile acidsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007904

has super-classes
not resistant to bile acidsc
decreased resistance to bile acidsc

abolished resistance to chloramphenicolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006142

has super-classes
decreased resistance to chloramphenicolc
not resistant to chloramphenicolc

abolished resistance to cold shockc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007589

has super-classes
absence of resistance to cold shockc
decreased resistance to cold shockc

abolished resistance to dessication stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005104

has super-classes
decreased resistance to dessication stressc

abolished resistance to freeze/thawing stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005105

has super-classes
decreased resistance to freeze/thawing stressc

abolished resistance to gamma ray radiationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005132

has super-classes
decreased resistance to gamma-ray radiationc

abolished resistance to heat shockc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007592

has super-classes
absence of resistance to heat shockc
decreased resistance to heat shockc

abolished resistance to host defense peptidesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007882

has super-classes
not resistant to host defense peptidec
decreased resistance to host defense peptidesc

abolished resistance to killing by hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007404

has super-classes
absence of resistance to killing by hostc
decreased resistance to killing by hostc

abolished resistance to lantibioticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006143

has super-classes
decreased resistance to lantibioticc
not resistant to lantibioticc

abolished resistance to macrolidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006144

has super-classes
decreased resistance to macrolidec
not resistant to macrolidec

abolished resistance to mitomycinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007655

has super-classes
not resistant to mitomycinc
decreased resistance to mitomycinc

abolished resistance to nitrofuranc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007826

has super-classes
not resistant to nitrofuranc
decreased resistance to nitrofuranc

abolished resistance to nutrient limitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007938

has super-classes
absence of resistance to nutrient limitationc
decreased resistance to nutrient limitationc

abolished resistance to organic aromatic compoundsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005346

has super-classes
decreased resistance to organic aromatic compoundsc

abolished resistance to organic heterocyclic compoundc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005277

has super-classes
decreased resistance to organic heterocyclic compoundc
not resistant to organic heterocyclic compoundc

abolished resistance to oxidative stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005131

has super-classes
decreased resistance to oxidative stressc
absence of resistance to oxidative stressc

abolished resistance to phenolsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007480

has super-classes
not resistant to phenolsc
decreased resistance to phenolsc

abolished resistance to pteridinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006145

has super-classes
not resistant to pteridinec
decreased resistance to pteridinec

abolished resistance to quaternary ammonium salt antimicrobial agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007487

has super-classes
not resistant to quaternary ammonium salt antimicrobial agentc
decreased resistance to quaternary ammonium salt antimicrobial agentc

abolished resistance to quinolonec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006146

has super-classes
decreased resistance to quinolonec
not resistant to quinolonec

abolished resistance to rifamycinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007221

has super-classes
not resistant to rifamycinc
decreased resistance to rifamycinc

abolished resistance to SDS-EDTA stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005135

has super-classes
decreased resistance to SDS-EDTA stressc

abolished resistance to sulfonamidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007834

has super-classes
not resistant to a sulfonamide antimicrobial agentc
decreased resistance to sulfonamdec

abolished resistance to tetracyclinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006147

has super-classes
decreased resistance to tetracyclinec
not resistant to tetracyclinec

abolished resistance to UV radiationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005134

has super-classes
decreased resistance to UV radiationc
absence of UV radiation resistancec

abolished resistance to UV-C radiationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007202

has super-classes
decreased resistance to UV-C radiationc

abolished resistance to x-ray radiationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005133

has super-classes
decreased resistance to x-ray radiationc

abolished schizogenyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007428

has super-classes
absence of schizogenyc
decreased schizogenyc

abolished sensitivity to bacteriophagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007245

has super-classes
not sensitive to bacteriophagec
decreased sensitivity to bacteriophagec

abolished septationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007168

has super-classes
decreased septationc

abolished sexual sporulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007438

has super-classes
absence of sexual sporulationc
decreased sexual sporulationc

abolished sexual sporulation frequencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005381

has super-classes
decreased sexual sporulation frequencyc

abolished site-specific recombinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006114

has super-classes
decreased frequency of site-specific recombinationc
absence of site-specific recombinationc

abolished spore germination efficiencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000012

has super-classes
decreased spore germination efficiencyc

abolished spore viabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007726

has super-classes
nonviable sporec
decreased spore viabilityc

abolished stress-induced mutagenesisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006148

has super-classes
decreased stress-induced mutagenesisc
absence of stress-induced mutagenesisc

abolished superoxide dismutase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007316

has super-classes
absence of superoxide dismutase activityc
decreased superoxide dismutase activityc

abolished survival in macrophagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007944

has super-classes
absence of survival in macrophagec
decreased survival in macrophagec

abolished transcription of gene or operonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007119

is equivalent to
decreased transcription of gene or operonc and (has_qualityop some absentc)
has super-classes
decreased transcription of gene or operonc
has_qualityop some absentc

abolished translationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007125

has super-classes
decreased translationc

abolished transportc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007673

has super-classes
absence of transportc
decreased transportc

abolished transporter activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007681

has super-classes
absence of transporter activityc
decreased transporter activityc

abolished transpositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006136

has super-classes
decreased rate of transposable element transpositionc
absence of transposable element transpositionc

abolished uninduced expression of the SOS responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006122

has super-classes
decreased basal expression of the SOS responsec

abolished urease activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006097

has super-classes
urease negativec
decreased urease activityc

abolished utilization of dinitrogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006149

has super-classes
decreased utilization of dinitrogenc
absence of dinitrogen utilizationc

abolished utilization of inorganic nitrogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006150

has super-classes
decreased utilization of inorganic nitrogen sourcec
absence of inorganic nitrogen utilizationc

abolished utilization of inorganic phosphorusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006151

has super-classes
decreased utilization of inorganic phosphorus sourcec

abolished utilization of inorganic sulfurc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006152

has super-classes
decreased utilization of inorganic sulfurc
absence of inorganic sulfur utilizationc

abolished utilization of organic nitrogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006153

has super-classes
decreased organic nitrogen source utilizationc

abolished utilization of organic phosphorusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006154

has super-classes
decreased utilization of organic phosphorus sourcec

abolished utilization of organic sulfurc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006155

has super-classes
decreased utilization of organic sulfur sourcec
absence of organic sulfur utilizationc

abolished vegetative cell growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007697

Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
has super-classes
absence of vegetative cell growthc
decreased vegetative cell growthc

abolished vegetative cell population viabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007731

has super-classes
decreased vegetative cell population viabilityc

abolished viability of vegetative microbial cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007718

has super-classes
decreased viability of vegetative microbial cellc

abolished virulencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000066

has super-classes
decreased virulencec
absence of virulencec

abolished vitamin/enzyme cofactor requirementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006157

has super-classes
decreased vitamin/enzyme cofactor requirementc

absence of laccase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007287

has super-classes
laccase activity phenotypec
has sub-classes
abolished laccase activityc

absence of motility by glidingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007488

has super-classes
absence of motilityc
has sub-classes
abolished motility by glidingc

absence of acid phosphatase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005175

has super-classes
acid phosphatase activity phenotypec
has sub-classes
abolished acid phosphatase activityc

absence of acid tolerance responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000377

has super-classes
acid tolerance response phenotypec
has sub-classes
abolished acid tolerance responsec

absence of acid-fast stainc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007299

has super-classes
acid-fast staining phenotypec

absence of actin cytoskeletonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005183

has super-classes
actin cytoskeleton phenotypec

absence of adhesionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005214

has super-classes
adhesion phenotypec
has sub-classes
abolished adhesionc

absence of adhesion to hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005207

has super-classes
adhesion to host phenotypec
has sub-classes
abolished adhesion to hostc

absence of aerobic population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005251

has super-classes
aerobic population growth phenotypec

absence of aerobic respirationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007176

has super-classes
aerobic respiration phenotypec
has sub-classes
abolished aerobic respirationc

absence of aerotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000159

is equivalent to
aerotaxis phenotypec and (has_qualityop some absentc)
has super-classes
aerotaxis phenotypec
has_qualityop some absentc
has sub-classes
abolished aerotaxisc, absence of negative aerotaxisc, absence of positive aerotaxisc

absence of agar invasionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005327

has super-classes
agar invasion phenotypec
has sub-classes
abolished agar invasionc

absence of akinete formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000007

is equivalent to
akinete formation phenotypec and (has_qualityop some absentc)
has super-classes
akinete formation phenotypec
absence of asexual sporulationc
has_qualityop some absentc
has sub-classes
abolished akinete formationc

absence of alpha-1,3-mannosyltransferase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005200

has super-classes
alpha-1,3-mannosyltransferase activity phenotypec
has sub-classes
abolished alpha-1,3-mannosyltransferase activityc

absence of an endospore coatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008008

has super-classes
endospore coat phenotypec

absence of an endospore cortexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008025

has super-classes
endospore cortex phenotypec

absence of an endospore germ cell wallc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008002

has super-classes
endospore germ cell wall phenotypec

absence of an exosporiumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007232

has super-classes
endospore exosporium phenotypec

absence of an inner endospore membranec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008015

has super-classes
inner endospore membrane phenotypec

absence of an outer endospore membranec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008011

has super-classes
outer endospore membrane phenotypec

absence of an outer membranec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000464

has super-classes
outer membrane phenotypec

absence of an SOS responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005022

has super-classes
SOS response phenotypec
has sub-classes
abolished induced expression of the SOS responsec

absence of anaerobic population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005191

has super-classes
anaerobic population growth phenotypec
has sub-classes
abolished anaerobic population growthc

absence of anaerobic respirationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007182

has super-classes
anaerobic respiration phenotypec
has sub-classes
abolished anaerobic respirationc

absence of antimicrobial peptide productionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006180

has super-classes
antimicrobial peptide production phenotypec
has sub-classes
abolished antimicrobial peptide productionc

absence of apoptosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007310

has super-classes
apoptosis phenotypec

absence of ascospore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007407

has super-classes
ascospore formation phenotypec
has sub-classes
abolished ascospore formationc

absence of asexual sporulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007236

has super-classes
asexual sporulation phenotypec
has sub-classes
absence of akinete formationc, absence of endospore formationc, absence of myxospore formationc

absence of binary fissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007233

has super-classes
binary fission phenotypec
has sub-classes
abolished binary fissionc

absence of biofilm formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007915

has super-classes
biofilm formation phenotypec
has sub-classes
abolished biofilm formationc

absence of buddingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007234

has super-classes
budding phenotypec
has sub-classes
abolished buddingc

absence of capsulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000211

has super-classes
capsule phenotypec
has sub-classes
abolished capsule formationc

absence of cell fusion during matingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005228

has super-classes
cell fusion during mating phenotypec

absence of cell growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007686

Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
has super-classes
cell growth phenotypec
has sub-classes
abolished cell growthc

absence of cell lysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005337

has super-classes
cell lysis phenotypec

absence of cell population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007920

has super-classes
cell population growth phenotypec

absence of cell population growth during nutrient limitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007963

has super-classes
cell population growth during nutrient limitation phenotypec
has sub-classes
abolished population growth during nutrient limitationc

absence of cell separation after cell division during vegetative growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007792

has super-classes
absence of cellular process during vegetative growthc
has sub-classes
abolished cell separation after cell division during vegetative growthc

absence of cell size variability within a cell populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007922

has super-classes
cell size variabilityc
has sub-classes
abolished cell size variability within a cell populationc

absence of cell wallc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005236

has super-classes
cell wall morphology phenotypec

absence of cell-cell self recognitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000384

has super-classes
cell-cell self recognition phenotypec

absence of cellular pigment accumulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007819

has super-classes
cellular pigment accumulation phenotypec
has sub-classes
absence of cellular pigment accumulation during vegetative growthc

absence of cellular pigment accumulation during vegetative growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007820

has super-classes
absence of cellular pigment accumulationc

absence of cellular process during vegetative growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007786

has super-classes
cellular process phenotype during vegetative growthc
has sub-classes
absence of cell separation after cell division during vegetative growthc

absence of cellular reactive oxygen speciesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007659

has super-classes
level of cellular reactive oxygen species phenotypec

absence of chemotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000097

has super-classes
chemotaxis phenotypec
has sub-classes
abolished chemotaxisc, absence of negative chemotaxisc, absence of positive chemotaxisc

absence of chitin in cell wallc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007625

has super-classes
presence of cell wallc

absence of chromosome segregationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007601

has super-classes
chromosome segregation phenotypec
has sub-classes
abolished chromosome segregationc

absence of colonization of a hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007254

has super-classes
colonization of a host phenotypec
has sub-classes
abolished colonization of a hostc

absence of colonization of host tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005283

has super-classes
colonization of host tissue phenotypec
has sub-classes
abolished colonization of host tissuec, absence of colonization of mouse tissuec, absence of colonization of rabbit tissuec

absence of colonization of mouse tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005297

has super-classes
absence of colonization of host tissuec
colonization of mouse tissuec
has sub-classes
abolished colonization of mouse tissuec

absence of colonization of rabbit tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005311

has super-classes
absence of colonization of host tissuec
colonization of rabbit tissue phenotypec
has sub-classes
abolished colonization of rabbit tissuec

absence of colonization of tissue in an immunocompromised hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005290

has super-classes
colonization of tissue in an immunocompromised host phenotypec
has sub-classes
abolished colonization of tissue in an immunocompromised hostc

absence of colonization of tissue in an immunocompromised mousec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005304

has super-classes
colonization of tissue in an immunocompromised mouse phenotypec

absence of colonization of tissue in an immunocompromised rabbitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005318

has super-classes
colonization of tissue in an immunocompromised rabbit phenotypec

absence of conjugationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007414

has super-classes
conjugation phenotypec

absence of diazonium blue B stainingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007296

has super-classes
diazonium blue B staining phenotypec
has sub-classes
abolished diazonium blue B stainingc

absence of dinitrogen utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007191

has super-classes
dinitrogen utilization phenotypec
has sub-classes
abolished utilization of dinitrogenc

absence of DNA breaksc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007604

has super-classes
DNA break phenotypec
has sub-classes
abolished DNA breaksc, absence of double-strand DNA breaksc, absence of single-strand DNA breaksc

absence of double-strand DNA breaksc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007612

has super-classes
absence of DNA breaksc

absence of drug-dependent population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007266

has super-classes
drug-dependent population growth phenotypec
has sub-classes
abolished drug-dependence of population growthc

absence of endocytosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005268

has super-classes
endocytosis phenotypec
has sub-classes
abolished endocytosisc

absence of endomembrane systemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005273

has super-classes
endomembrane system phenotypec

absence of endospore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000018

is equivalent to
endospore formation phenotypec and (has_qualityop some absentc)
has super-classes
endospore formation phenotypec
absence of asexual sporulationc
has_qualityop some absentc
has sub-classes
abolished endospore formationc

absence of enzymatic activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007281

has super-classes
enzymatic activity phenotypec
has sub-classes
abolished enzymatic activityc

absence of ferric reductase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005149

has super-classes
ferric reductase activity phenotypec
has sub-classes
abolished ferric reductase activityc

absence of filamentous growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005249

has super-classes
filamentous growth phenotypec

absence of flagellumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000030

has super-classes
flagellum morphology phenotypec
has sub-classes
abolished flagellac

absence of flocculationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007464

has super-classes
flocculation phenotypec
has sub-classes
abolished flocculationc

absence of fosfomycin resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007857

has super-classes
fosfomycin resistance phenotypec
has sub-classes
abolished fosfomycin resistancec

absence of gene silencingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005066

has super-classes
gene silencing phenotypec
has sub-classes
abolished gene silencingc

absence of germ tubec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007843

has super-classes
germ tube morphology phenotypec

absence of golgi apparatusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005241

has super-classes
golgi apparatus phenotypec

absence of growth at alkaline pHc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007948

absence of haploid fruitingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007544

has super-classes
haploid fruiting phenotypec
has sub-classes
abolished haploid fruitingc

absence of heme utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000454

has super-classes
heme utilization phenotypec
has sub-classes
abolished heme utilizationc

absence of hemolysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000208

has super-classes
hemolysis testc
has sub-classes
abolished hemolysisc

absence of heterocystsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000011

has super-classes
heterocyst formation phenotypec
has sub-classes
abolished heterocyst formationc

absence of Holliday junction structuresc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007619

has super-classes
Holliday junction structure phenotypec

absence of homologous recombinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005052

has super-classes
homologous recombination phenotypec
has sub-classes
abolished homologous recombinationc

absence of inorganic carbon source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007850

has super-classes
carbon source utilization phenotypec
has sub-classes
abolished inorganic carbon source utilizationc

absence of inorganic nitrogen utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007307

has super-classes
inorganic nitrogen source utilization phenotypec
has sub-classes
abolished utilization of inorganic nitrogenc

absence of inorganic sulfur utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007325

has super-classes
sulfur source utilization phenotypec
has sub-classes
abolished utilization of inorganic sulfurc

absence of internalization by macrophagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000371

has super-classes
internalization by macrophage phenotypec

absence of lethalityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007396

has super-classes
lethality phenotypec
has sub-classes
abolished lethalityc, absence of lethality in an amoeba hostc, absence of lethality in an invertebrate hostc, absence of lethality in immunocompromised micec, absence of lethality in micec

absence of lethality in an amoeba hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007529

has super-classes
absence of lethalityc
has sub-classes
abolished lethality in an amoeba hostc

absence of lethality in an invertebrate hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007525

has super-classes
absence of lethalityc

absence of lethality in immunocompromised micec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007445

has super-classes
absence of lethalityc

absence of lethality in micec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007444

has super-classes
absence of lethalityc

absence of matingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005351

has super-classes
mating phenotypec

absence of meiotic nuclear divisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007563

has super-classes
meiotic nuclear division phenotypec
has sub-classes
abolished meiotic nuclear divisionc

absence of microaerophilic growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005256

has super-classes
microaerophilic population growth phenotypec

absence of microbial cell viabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007393

has super-classes
microbial cell viability phenotypec
has sub-classes
absence of microbial vegetative cell viabilityc

absence of microbial vegetative cell viabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007780

has super-classes
absence of microbial cell viabilityc
has sub-classes
nonviable after spore germinationc, septation following abnormal chromosome segregation during vegetative growthc

absence of microtubule cytoskeletonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007763

has super-classes
microtubule cytoskeleton phenotypec

absence of mitotic recombinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005072

has super-classes
mitotic recombination phenotypec

absence of motilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000133

is equivalent to
motility phenotypec and (has_qualityop some absentc)
has super-classes
motility phenotypec
has_qualityop some absentc
has sub-classes
abolished motilityc, absence of motility by glidingc, absence of motility by swarmingc, absence of motility by swimmingc, absence of motility by twitchingc

absence of motility by swarmingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007489

has super-classes
absence of motilityc
has sub-classes
abolished motility by swarmingc

absence of motility by swimmingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007490

has super-classes
absence of motilityc
has sub-classes
abolished motility by swimmingc

absence of motility by twitchingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007491

has super-classes
absence of motilityc
has sub-classes
abolished motility by twitchingc

absence of mucoid coloniesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007320

has super-classes
mucoid colony surface phenotypec
has sub-classes
abolished mucoidyc

absence of multiple fissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007235

has super-classes
multiple fission phenotypec
has sub-classes
abolished multiple fissionc, absence of schizogenyc

absence of myxospore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000021

is equivalent to
myxospore formation phenotypec and (has_qualityop some absentc)
has super-classes
myxospore formation phenotypec
absence of asexual sporulationc
has_qualityop some absentc
has sub-classes
abolished myxospore formationc

absence of nanotubesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000247

has super-classes
nanotube phenotypec

absence of natural competencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008036

has super-classes
natural competence phenotypec
has sub-classes
abolished natural competencec

absence of negative aerotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000059

has super-classes
absence of aerotaxisc

absence of negative chemotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000055

has super-classes
absence of chemotaxisc

absence of negative osmotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005367

has super-classes
absence of osmotaxisc
has sub-classes
abolished negative osmotaxisc

absence of negative supercoilingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006129

has super-classes
DNA supercoiling phenotypec
has sub-classes
abolished negative DNA supercoilingc

absence of organic carbon source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007849

has super-classes
carbon source utilization phenotypec
has sub-classes
abolished organic carbon source utilizationc

absence of organic nitrogen source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007970

has super-classes
organic nitrogen source utilization phenotypec

absence of organic sulfur utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007326

has super-classes
sulfur source utilization phenotypec
has sub-classes
abolished utilization of organic sulfurc

absence of osmotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005363

has super-classes
osmotaxis phenotypec
has sub-classes
abolished osmotaxisc, absence of negative osmotaxisc, absence of positive osmotaxisc

absence of outer membrane vesiclesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006109

has super-classes
outer membrane vesicles phenotypec
has sub-classes
abolished outer membrane vesiclec

absence of phosphatase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005161

has super-classes
phosphatase activity phenotypec

absence of phospholipase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005019

has super-classes
phospholipase activity phenotypec
has sub-classes
abolished phospholipase activityc

absence of pilusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000033

has super-classes
pilus morphology phenotypec
has sub-classes
abolished number of pilic

absence of population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007596

has super-classes
population growth phenotypec

absence of population growth at acidic pHc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007946

has super-classes
pH effects on population growth phenotypec

absence of population growth at high temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007951

has super-classes
temperature effects on population growth phenotypec
has sub-classes
decreased population growth at high temperaturec

absence of population growth at low temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007957

has super-classes
temperature effects on population growth phenotypec
has sub-classes
abolished population growth at low temperaturec

absence of population growth in high osmolarityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007518

has super-classes
population growth in high osmolarity phenotypec
has sub-classes
abolished population growth in high osmolarityc

absence of population growth on defined mediumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007779

has super-classes
population growth on defined medium phenotypec

absence of positive aerotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000058

has super-classes
absence of aerotaxisc

absence of positive chemotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000054

has super-classes
absence of chemotaxisc

absence of positive osmotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005369

has super-classes
absence of osmotaxisc
has sub-classes
abolished positive osmotaxisc

absence of positive supercoilingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006130

has super-classes
DNA supercoiling phenotypec
has sub-classes
abolished positive DNA supercoilingc

absence of protein kinase A activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005155

has super-classes
protein kinase A activity phenotypec
has sub-classes
abolished protein kinase A activityc

absence of protein localizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005335

has super-classes
protein localization phenotypec

absence of quorum sensingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000063

has super-classes
quorum sensing phenotypec
has sub-classes
abolished quorum sensingc

absence of resistance to A22c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007871

This term was deemed to be too granular. In its place, use OMP:0007877 not resistant to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field.

absence of resistance to bicyclomycinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007864

absence of resistance to cold shockc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007581

has super-classes
resistance to cold shock phenotypec
has sub-classes
abolished resistance to cold shockc

absence of resistance to heat shockc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007584

has super-classes
resistance to heat shock phenotypec
has sub-classes
abolished resistance to heat shockc

absence of resistance to killing by hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005140

has super-classes
resistance to killing by host phenotypec
has sub-classes
abolished resistance to killing by hostc

absence of resistance to nutrient limitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007934

has super-classes
resistance to nutrient limitation stress phenotypec
has sub-classes
abolished resistance to nutrient limitationc

absence of resistance to oxidative stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007571

has super-classes
resistance to oxidative stress phenotypec
has sub-classes
abolished resistance to oxidative stressc

absence of schizogenyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007425

has super-classes
schizogeny phenotypec
absence of multiple fissionc
has sub-classes
abolished schizogenyc

absence of sexual reproductionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007440

has super-classes
sexual reproduction phenotypec
has sub-classes
absence of sexual sporulationc

absence of sexual sporulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007434

has super-classes
sexual sporulation phenotypec
absence of sexual reproductionc
has sub-classes
abolished sexual sporulationc

absence of single-strand DNA breaksc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007611

has super-classes
absence of DNA breaksc

absence of site-specific recombinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005057

has super-classes
site-specific recombination phenotypec
has sub-classes
abolished site-specific recombinationc

absence of stress-induced mutagenesisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005033

has super-classes
stress-induced mutagenesis phenotypec
has sub-classes
abolished stress-induced mutagenesisc

absence of superoxide dismutase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005167

has super-classes
superoxide dismutase activity phenotypec
has sub-classes
abolished superoxide dismutase activityc

absence of survival in macrophagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007453

has super-classes
survival in macrophage phenotypec
has sub-classes
abolished survival in macrophagec

absence of tailc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005392

has super-classes
tail morphology phenotypec

absence of the endospore corec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008005

has super-classes
endospore core phenotypec

absence of titan cellsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007508

has super-classes
titan cell morphology phenotypec

absence of transcription of gene or operonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000391

has super-classes
transcription phenotypec

absence of transportc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007669

has super-classes
transport phenotypec
has sub-classes
abolished transportc

absence of transporter activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007677

has super-classes
transporter activity phenotypec
has sub-classes
abolished transporter activityc

absence of transposable element transpositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006016

has super-classes
transposable element transposition phenotypec
has sub-classes
abolished transpositionc

absence of UV radiation resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007283

has super-classes
resistance to UV radiation phenotypec
has sub-classes
abolished resistance to UV radiationc

absence of vegetative cell growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007693

Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
has super-classes
vegetative cell growth phenotypec
has sub-classes
abolished vegetative cell growthc

absence of vegetative cell lysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007743

has super-classes
vegetative cell lysis phenotypec

absence of vegetative cell population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007797

has super-classes
vegetative cell population growth phenotypec

absence of virulencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000065

has super-classes
virulence phenotypec
has sub-classes
abolished virulencec

absentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000462

Example: [ E=wing Q=absent ] -applies to an organism that lacks wings. Note that this is the reciprocal quality to the relational quality "lacks all parts of type". This means that [E=wing Q=absent] is replaceable with [E=organism Q=lacks_all_parts_of_type E2=Wing]. The latter is preferable as it allows greater precision in stating what is lacking from where. E.g. We can say [E=spermatocyte Q=lacks_all_parts_of_type E2=aster] to describe spermatocytes that have no asters.
has super-classes
amountc

acid phosphatase activity phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005173

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
enzymatic activity phenotypec
has sub-classes
absence of acid phosphatase activityc, altered acid phosphatase activityc, presence of acid phosphatase activityc

acid tolerance response phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000376

has super-classes
response to stress phenotypec
has sub-classes
absence of acid tolerance responsec, altered acid tolerance responsec, presence of acid tolerance responsec

acid-fast staining phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000199

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cell staining phenotypec
has sub-classes
absence of acid-fast stainc, altered acid-fast stainc, presence of acid-fast stainc

acidophilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005009

has super-classes
pH effects on population growth phenotypec

acridine antimicrobial agent resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007365

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
altered resistance to an acridinec, not resistant to an acridinec, resistant to an acridinec

actin cytoskeleton morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005182

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
actin cytoskeleton phenotypec
has sub-classes
altered actin cytoskeleton morphologyc

actin cytoskeleton phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007758

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cytoskeleton phenotypec
has sub-classes
absence of actin cytoskeletonc, actin cytoskeleton morphology phenotypec, altered actin cytoskeletonc, presence of actin cytoskeletonc

adhesion phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005205

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
biological process phenotypec
has sub-classes
absence of adhesionc, adhesion to host phenotypec, altered adhesionc, presence of adhesionc

adhesion to host phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005206

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
adhesion phenotypec
colonization of a host phenotypec
has sub-classes
absence of adhesion to hostc, altered adhesion to hostc, presence of adhesion to hostc

aerobic population growth phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005250

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
O2 effects on population growth phenotypec
has sub-classes
absence of aerobic population growthc, altered aerobic population growthc, presence of aerobic population growthc

aerobic respiration phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000216

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
respiration phenotypec
has sub-classes
absence of aerobic respirationc, altered aerobic respirationc, presence of aerobic respirationc

aerotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0009454

has super-classes
chemotaxisc
energy taxisc

aerotaxis phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000047

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
taxis phenotypec and (inheres_inop some aerotaxisc)
has super-classes
taxis phenotypec
inheres_inop some aerotaxisc
has sub-classes
absence of aerotaxisc, altered aerotaxisc, presence of aerotaxisc

aerotolerant anaerobec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000105

has super-classes
commonly used descriptorsc

agar invasion phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005325

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
growth phenotypec
has sub-classes
absence of agar invasionc, altered agar invasionc, presence of agar invasionc

aggregatedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001629

has super-classes
irregular spatial patternc

akinete envelope attributec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000135

has super-classes
akinete morphology phenotypec

akinete formation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000093

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Akinetes typically are more resistant to dessication and other environmental stresses than vegetative cells.
has super-classes
asexual sporulation phenotypec
has sub-classes
absence of akinete formationc, altered akinete formationc, presence of akinete formationc

akinete morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007409

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Akinetes are typically more resistant to dessication and other environmental stresses than vegetative cells.
has super-classes
spore morphology phenotypec
has sub-classes
akinete envelope attributec, altered akinete morphologyc, cylindrical akinetec, spherical akinetec

alkaliphilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005011

has super-classes
pH effects on population growth phenotypec

alkaloid chemical resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000455

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
chemical resistance phenotypec
has sub-classes
altered alkaloid resistancec, caffeine resistance phenotypec, not resistant to alkaloidc, resistant to alkaloidc

alkylating agent resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007372

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
chemical resistance phenotypec
has sub-classes
altered resistance to an alkylating agentc, not resistant to alkylating agentc, resistant to alkylating agentc

alpha-1,3-mannosyltransferase activity phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005198

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
enzymatic activity phenotypec
has sub-classes
absence of alpha-1,3-mannosyltransferase activityc, altered alpha-1,3-mannosyltransferase activityc, presence of alpha-1,3-mannosyltransferase activityc

altered haploid fruitingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007545

has super-classes
altered asexual reproductionc
haploid fruiting phenotypec
has sub-classes
decreased haploid fruitingc, increased haploid fruitingc

altered acid phosphatase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005176

has super-classes
acid phosphatase activity phenotypec
has sub-classes
decreased acid phosphatase activityc, increased acid phosphatase activityc

altered acid tolerance responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000378

has super-classes
acid tolerance response phenotypec
altered response to stress phenotypec
has sub-classes
decreased acid tolerance responsec, increased acid tolerance responsec

altered acid-fast stainc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007300

has super-classes
acid-fast staining phenotypec
altered cell staining phenotypec

altered actin cortical patch localizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007765

has super-classes
altered cellular physical quality phenotype during vegetative growthc
has sub-classes
dispersed actin cortical patch localizationc

altered actin cytoskeletonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007753

has super-classes
altered cytoskeletonc
has sub-classes
altered actin cytoskeleton during vegetative growthc, altered actin cytoskeleton morphologyc

altered actin cytoskeletonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007760

has super-classes
actin cytoskeleton phenotypec

altered actin cytoskeleton during vegetative growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007755

has super-classes
altered actin cytoskeletonc

altered actin cytoskeleton morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005185

has super-classes
altered cytoskeleton morphology phenotypec
actin cytoskeleton morphology phenotypec
altered actin cytoskeletonc
has sub-classes
altered actin cytoskeleton morphology during vegetative growthc

altered actin cytoskeleton morphology during vegetative growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007747

has super-classes
altered actin cytoskeleton morphologyc

altered adhesionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005215

has super-classes
adhesion phenotypec
altered biological processc
has sub-classes
decreased adhesionc, increased adhesionc

altered adhesion to hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005209

has super-classes
adhesion to host phenotypec
altered biological processc
has sub-classes
decreased adhesion to hostc, increased adhesion to hostc

altered aerobic population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005252

has super-classes
aerobic population growth phenotypec

altered aerobic respirationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007177

has super-classes
aerobic respiration phenotypec
has sub-classes
decreased aerobic respirationc, increased aerobic respirationc

altered aerotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007076

is equivalent to
aerotaxis phenotypec and (has_qualityop some altered_relative_toc)
has super-classes
aerotaxis phenotypec
altered taxisc
has_qualityop some altered_relative_toc
has sub-classes
decreased aerotaxisc, increased aerotaxisc

altered agar invasionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005328

has super-classes
agar invasion phenotypec
has sub-classes
decreased agar invasion phenotypec, increased agar invasionc

altered akinete formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007196

is equivalent to
akinete formation phenotypec and (has_qualityop some altered_process_qualityc)
has super-classes
akinete formation phenotypec
altered asexual sporulationc
has_qualityop some altered_process_qualityc
has sub-classes
decreased akinete formationc, increased akinete formationc

altered akinete morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007410

has super-classes
akinete morphology phenotypec
altered spore morphologyc

altered alkaloid resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007137

has super-classes
alkaloid chemical resistance phenotypec
altered resistance to an antimicrobial agentc
has sub-classes
altered caffeine resistancec

altered alpha-1,3-mannosyltransferase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005201

has super-classes
alpha-1,3-mannosyltransferase activity phenotypec
has sub-classes
abolished alpha-1,3-mannosyltransferase activityc, decreased alpha-1,3-mannosyltransferase activityc, increased alpha-1,3-mannosyltransferase activityc

altered amino acid requirementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007354

has super-classes
amino acid requirementc
altered growth factor requirementc
has sub-classes
decreased amino acid requirementc, increased amino acid requirementc

altered aminoglycoside resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006017

has super-classes
aminoglycoside antimicrobial agent resistance phenotypec
altered resistance to an antimicrobial agentc
has sub-classes
decreased resistance to aminoglycosidec, increased resistance to aminoglycosidec

altered aminopyrimidine resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006018

has super-classes
aminopyrimidine resistance phenotypec
altered resistance to an antimicrobial agentc
has sub-classes
decreased resistance to aminopyrimidinec, increased resistance to aminopyrimidinec

altered anaerobic population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005192

Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments.
has super-classes
anaerobic population growth phenotypec
has sub-classes
decreased anaerobic population growthc, increased anaerobic population growthc

altered anaerobic respirationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007183

has super-classes
anaerobic respiration phenotypec
has sub-classes
decreased anaerobic respirationc, increased anaerobic respirationc

altered antimicrobial peptide productionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006106

has super-classes
antimicrobial peptide production phenotypec
has sub-classes
decreased antimicrobial peptide productionc, increased antimicrobial peptide productionc

altered apoptosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007312

has super-classes
apoptosis phenotypec
altered cell deathc
has sub-classes
decreased apoptosisc, increased apoptosisc

altered ascospore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007408

has super-classes
ascospore formation phenotypec
altered sexual sporulationc
has sub-classes
decreased ascospore formationc, increased ascospore formationc

altered ascospore morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007512

has super-classes
altered spore morphologyc
ascospore morphology phenotypec

altered asexual reproductionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007144

has super-classes
asexual reproduction phenotypec
altered population growthc
has sub-classes
altered haploid fruitingc, altered asexual sporulationc, altered binary fissionc, altered buddingc, altered multiple fissionc

altered asexual sporulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007145

has super-classes
asexual sporulation phenotypec
altered asexual reproductionc
has sub-classes
altered akinete formationc, altered endospore formationc, altered myxospore formationc, decreased asexual spore formationc, increased asexual spore formationc

altered autophagic vesicle formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007335

has super-classes
autophagic vesicle formation phenotypec
altered autophagyc
has sub-classes
decreased autophagic vesicle formationc, increased autophagic vesicle formationc

altered autophagyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007343

has super-classes
autophagy phenotypec
altered cellular processc
has sub-classes
altered autophagic vesicle formationc

altered azole resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006019

has super-classes
azole antimicrobial agent resistance phenotypec
altered resistance to an antimicrobial agentc
has sub-classes
decreased resistance to azolec, increased resistance to azole compoundc

altered bacteriocin resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006020

has super-classes
bacteriocin resistance phenotypec
altered resistance to an antimicrobial agentc
has sub-classes
altered lantibiotic resistance phenotypec, decreased resistance to bacteriocinc, increased resistance to bacteriocinc

altered bacteriophage sensitivityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007243

has super-classes
bacteriophage sensitivity phenotypec
altered host-virus interactionc
has sub-classes
decreased sensitivity to bacteriophagec, increased sensitivity to bacteriophagec

altered basal expression of the SOS responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005054

has super-classes
altered SOS response phenotypec
has sub-classes
decreased basal expression of the SOS responsec, increased basal expression of the SOS responsec

altered beta-lactam resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006021

has super-classes
beta-lactam resistance phenotypec
altered resistance to an antimicrobial agentc
has sub-classes
decreased resistance to beta-lactamc, increased resistance to beta-lactam compoundc

altered binary fissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006168

has super-classes
binary fission phenotypec
altered asexual reproductionc
has sub-classes
decreased binary fissionc, increased binary fissionc

altered biofilm formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005129

has super-classes
biofilm formation phenotypec
altered microbial phenotypec
has sub-classes
decreased biofilm formationc, increased biofilm formationc

altered biological processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007351

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
has super-classes
altered microbial phenotypec
biological process phenotypec
has sub-classes
altered DNA replicationc, altered adhesionc, altered adhesion to hostc, altered cellular processc, altered chromosome segregationc, altered population growthc

altered biological process phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007549

altered bud morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007328

has super-classes
altered cell morphologyc
bud morphology phenotypec
has sub-classes
altered bud neck morphologyc

altered bud neck morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007330

has super-classes
altered bud morphologyc
bud neck morphologyc

altered buddingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006035

has super-classes
budding phenotypec
altered asexual reproductionc
has sub-classes
decreased buddingc, increased buddingc

altered caffeine resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005001

has super-classes
caffeine resistance phenotypec
altered alkaloid resistancec
has sub-classes
decreased caffeine resistancec, increased caffeine resistancec

altered capsule morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007502

has super-classes
capsule phenotypec
has sub-classes
altered capsule sizec

altered capsule phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007133

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
capsule phenotypec
has sub-classes
decreased amount of capsulec, increased amount of capsulec

altered capsule sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007503

has super-classes
altered capsule morphologyc
has sub-classes
Increased capsule sizec, decreased capsule sizec

altered carbon source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007078

has super-classes
carbon source utilization phenotypec
altered nutrient utilizationc
has sub-classes
decreased inorganic carbon source utilizationc, decreased organic carbon source utilizationc, increased inorganic carbon source utilizationc, increased organic carbon source utilizationc

altered catalase test resultc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006077

has super-classes
catalase test phenotypec
altered differential test resultc
has sub-classes
decreased catalase activityc, increased catalase activityc

altered cell areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007983

has super-classes
cell area phenotypec
altered cell sizec
has sub-classes
altered cell area variabilityc, decreased cell areac, increased cell areac

altered cell area variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007984

has super-classes
altered cell size variability within a cell populationc
altered cell areac
has sub-classes
decreased cell area variabilityc, increased cell area variabilityc

altered cell arrangementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007128

has super-classes
cell arrangement phenotypec
altered microbial phenotypec

altered cell aspect ratioc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000193

has super-classes
cell aspect ratio phenotypec
altered cell shapec
has sub-classes
altered cell aspect ratio variabilityc, decreased cell aspect ratioc, increased cell aspect ratioc

altered cell aspect ratio variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000227

has super-classes
altered cell aspect ratioc
has sub-classes
decreased cell aspect ratio variabilityc, increased cell aspect ratio variabilityc

altered cell circularityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000044

has super-classes
cell circularity phenotypec
altered cell shapec
has sub-classes
altered cell circularity variabilityc, decreased cell circularityc, increased cell circularityc

altered cell circularity variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000138

has super-classes
altered cell circularityc
has sub-classes
decreased cell circularity variabilityc, increased cell circularity variabilityc

altered cell cyclec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005136

has super-classes
cell cycle phenotypec
altered microbial phenotypec
has sub-classes
altered DNA replicationc, altered mitotic cell cyclec, delayed cell cycle progressionc

altered cell deathc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007341

has super-classes
cell death phenotypec
altered cellular processc
has sub-classes
altered apoptosisc

altered cell developmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007352

has super-classes
cell development phenotypec
altered cellular processc
has sub-classes
altered heterocyst formationc

altered cell diameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007977

has super-classes
cell diameter phenotypec
altered cell sizec
has sub-classes
altered cell diameter variabilityc

altered cell diameter variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007978

has super-classes
altered cell diameterc
has sub-classes
decreased cell diameter variabilityc, increased cell diameter variabilityc

altered cell divisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000250

has super-classes
altered cellular process during vegetative growthc
has sub-classes
altered cell division ratio variabilityc

altered cell division during cell population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000350

has super-classes
cell division during cell population growth phenotypec
altered cell population growthc
has sub-classes
altered fraction of non-constricted cellsc

altered cell division ratio variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000251

has super-classes
altered cell divisionc
altered cell population phenotypec
has sub-classes
decreased cell division ratio variabilityc, increased cell division ratio variabilityc

altered cell fusionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005221

has super-classes
cell fusion phenotypec
has sub-classes
decreased cell fusionc, delayed cell fusionc, increased cell fusionc

altered cell fusion during matingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005229

has super-classes
cell fusion during mating phenotypec
has sub-classes
decreased cell fusion during matingc, delayed cell fusion during matingc, increased cell fusion during matingc

altered cell growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007687

Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
has super-classes
altered cellular processc
cell growth phenotypec
has sub-classes
altered vegetative cell growthc, decreased cell growthc, increased cell growthc

altered cell lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007975

has super-classes
cell length phenotypec
altered cell sizec
has sub-classes
decreased cell lengthc, increased cell lengthc

altered cell length variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007976

has super-classes
altered cell population phenotypec
altered cell size variability within a cell populationc
has sub-classes
decreased cell length variabilityc, increased cell length variabilityc

altered cell lysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005339

has super-classes
cell lysis phenotypec
altered cell phenotypec
has sub-classes
decreased cell lysisc, increased cell lysisc

altered cell morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007103

is equivalent to
cell morphology phenotypec and (has_qualityop some altered_relative_toc)
has super-classes
cell morphology phenotypec
altered microbial phenotypec
has_qualityop some altered_relative_toc
has sub-classes
altered bud morphologyc, altered cell shapec, altered cell sizec, altered cell wall morphologyc, altered nuclear morphologyc, altered nuclear positionc, altered spore morphologyc, altered titan cell morphologyc, altered vacuolar morphologyc, altered vegetative cell morphologyc, bending cell morphologyc, bulging cell morphologyc, filamenting cell morphologyc

altered cell motility by swarmingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005323

has super-classes
altered motilityc
has sub-classes
decreased motility by swarmingc, increased motility by swarmingc

altered cell motility by swimmingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005324

has super-classes
altered motilityc
has sub-classes
decreased motility by swimmingc, increased motility by swimmingc

altered cell motility by twitchingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007493

has super-classes
altered motilityc
has sub-classes
decreased motility by twitchingc, increased motility by twitchingc

altered cell perimeter lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000273

has super-classes
cell perimeter length phenotypec
altered cell sizec
has sub-classes
decreased cell perimeterc, increased cell perimeterc

altered cell perimeter length variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000277

has super-classes
altered cell population phenotypec
altered cell sizec
altered cell size variability within a cell populationc
has sub-classes
decreased cell perimeter length variabilityc, increased cell perimeter length variabilityc

altered cell phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007638

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
altered microbial phenotypec
cell phenotypec
has sub-classes
altered cell lysisc, altered cellular physical quality phenotypec, altered vegetative cell phenotypec

altered cell population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007809

has super-classes
altered cell population phenotypec
altered population growthc
cell population growth phenotypec
has sub-classes
altered cell division during cell population growthc, altered cell population growth during nutrient limitationc, altered cell population growth ratec, altered cell population growth yieldc, altered vegetative cell population growthc

altered cell population growth during nutrient limitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007965

has super-classes
altered cell population growthc
cell population growth during nutrient limitation phenotypec
has sub-classes
decreased cell population growth during nutrient limitationc, increased population growth during nutrient limitationc

altered cell population growth ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000266

has super-classes
altered cell population growthc
cell population growth rate phenotypec
has sub-classes
decreased cell population growth ratec, increased cell population growth ratec

altered cell population growth yieldc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000284

has super-classes
cell population growth yield phenotypec
altered cell population growthc
has sub-classes
decreased cell population growth yieldc, increased cell population growth yieldc

altered cell population phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000281

has super-classes
cell population phenotypec
altered population phenotypec
has sub-classes
altered cell division ratio variabilityc, altered cell length variabilityc, altered cell perimeter length variabilityc, altered cell population growthc, altered cell population viabilityc, altered nucleoid area variabilityc, altered nucleoid constriction during cell divisionc

altered cell population viabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007459

has super-classes
altered cell population phenotypec
cell population viability phenotypec
has sub-classes
altered vegetative cell population viabilityc, decreased cell population viabilityc, increased cell population viabilityc

altered cell separation after cell division during vegetative growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007788

has super-classes
altered cellular process during vegetative growthc
has sub-classes
decreased frequency of cell separation after cell division during vegetative growthc

altered cell shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007101

is equivalent to
cell shape phenotypec and (has_qualityop some altered_relative_toc)
has super-classes
cell shape phenotypec
altered cell morphologyc
has_qualityop some altered_relative_toc
has sub-classes
altered cell aspect ratioc, altered cell circularityc, altered cell stalkc, altered vegetative cell shapec, more rod-like cell shapec, more rounded cell shapec

altered cell shape variability phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000343

has super-classes
cell shape variability phenotypec

altered cell sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007083

has super-classes
cell size phenotypec
altered cell morphologyc
has sub-classes
altered cell areac, altered cell diameterc, altered cell lengthc, altered cell perimeter lengthc, altered cell perimeter length variabilityc, altered cell surface areac, altered cell surface area-to-volume ratioc, altered cell volumec, altered vegetative cell sizec, decreased cell sizec, increased cell sizec

altered cell size variability within a cell populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007918

has super-classes
cell size variabilityc
has sub-classes
altered cell area variabilityc, altered cell length variabilityc, altered cell perimeter length variabilityc, altered cell surface area variabilityc, altered cell surface area-to-volume ratio variabilityc, decreased cell size variability within a cell populationc, increased cell size variability within a cell populationc

altered cell staining phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007304

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cell staining phenotypec
altered microbial phenotypec
has sub-classes
altered acid-fast stainc, altered diazonium blue B stainingc

altered cell stalkc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007116

has super-classes
stalked cell shapec
altered cell shapec

altered cell surface areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007993

has super-classes
cell surface area phenotypec
altered cell sizec
has sub-classes
altered cell surface area variabilityc, decreased cell surface areac, increased cell surface areac

altered cell surface area variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007996

has super-classes
altered cell size variability within a cell populationc
altered cell surface areac
has sub-classes
decreased cell surface area variabilityc, increased cell surface area variabilityc

altered cell surface area-to-volume ratioc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007999

has super-classes
cell surface area-to-volume ratio phenotypec
altered cell sizec
has sub-classes
altered cell surface area-to-volume ratio variabilityc, decreased cell surface area-to-volume ratioc, increased cell surface area-to-volume ratioc

altered cell surface area-to-volume ratio variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000025

has super-classes
altered cell size variability within a cell populationc
altered cell surface area-to-volume ratioc
has sub-classes
decreased cell surface area-to-volume ratio variabilityc, increased cell surface area-to-volume ratio variabilityc

altered cell volumec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007989

has super-classes
cell volume phenotypec
altered cell sizec
has sub-classes
altered cell volume variabilityc

altered cell volume variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007990

has super-classes
altered cell volumec
has sub-classes
decreased cell volume variabilityc, increased cell volume variabilityc

altered cell wall chitin levelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007626

has super-classes
altered cell wall morphologyc
altered polysaccharide levelc
has sub-classes
decreased cell wall chitin levelc, increased cell wall chitin levelc

altered cell wall morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005234

has super-classes
cell wall morphology phenotypec
altered cell morphologyc
has sub-classes
altered cell wall chitin levelc, altered cell wall protein levelc

altered cell wall protein levelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007630

has super-classes
altered cell wall morphologyc
altered protein levelc
has sub-classes
decreased cell wall protein levelc, increased cell wall protein levelc

altered cell-cell self recognitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000386

has super-classes
cell-cell self recognition phenotypec
has sub-classes
decreased cell-cell self recognitionc, increased cell-cell self recognitionc

altered cellular component phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007357

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cellular component phenotypec

altered cellular physical quality phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007637

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cellular physical quality phenotypec
altered cell phenotypec
has sub-classes
altered cellular physical quality phenotype during vegetative growthc, altered level of substance in cellc, altered microbial cell viabilityc, altered subcellular component phenotypec

altered cellular physical quality phenotype during vegetative growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007749

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
altered cellular physical quality phenotypec
cellular physical quality phenotype during vegetative growthc
has sub-classes
altered actin cortical patch localizationc

altered cellular pigment accumulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007814

has super-classes
cellular pigment accumulation phenotypec
has sub-classes
decreased cellular pigment accumulationc, increased cellular pigment accumulationc

altered cellular processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007342

has super-classes
cellular process phenotypec
altered biological processc
has sub-classes
altered autophagyc, altered cell deathc, altered cell developmentc, altered cell growthc, altered meiotic nuclear divisionc

altered cellular process during vegetative growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007784

has super-classes
cellular process phenotype during vegetative growthc
has sub-classes
altered cell divisionc, altered cell separation after cell division during vegetative growthc

altered chemotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007077

has super-classes
chemotaxis phenotypec
altered taxisc
has sub-classes
decreased chemotaxisc, increased chemotaxisc

altered chloramphenicol resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006025

has super-classes
chloramphenicol resistance phenotypec
altered resistance to an antimicrobial agentc
has sub-classes
decreased resistance to chloramphenicolc, increased resistance to chloramphenicolc

altered chromosome segregationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006001

is equivalent to
chromosome segregation phenotypec and (has_qualityop some altered_relative_toc)
has super-classes
chromosome segregation phenotypec
altered biological processc
has_qualityop some altered_relative_toc
has sub-classes
decreased frequency of chromosome missegregationc, increased frequency of chromosome missegregationc

altered colonization of a hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007255

has super-classes
colonization of a host phenotypec
altered microbe-host interactionc
has sub-classes
altered colonization of host tissuec, decreased colonization of a hostc, increased colonization of a hostc

altered colonization of host tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005284

has super-classes
colonization of host tissue phenotypec
altered colonization of a hostc
has sub-classes
altered colonization of mouse tissuec, altered colonization of rabbit tissuec, decreased colonization of host tissuec, increased colonization of host tissuec

altered colonization of mouse tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005298

has super-classes
altered colonization of host tissuec
colonization of mouse tissuec
has sub-classes
decreased colonization of mouse tissuec, increased colonization of mouse tissuec

altered colonization of rabbit tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005312

has super-classes
altered colonization of host tissuec
colonization of rabbit tissue phenotypec
has sub-classes
decreased colonization of rabbit tissuec, increased colonization of rabbit tissuec

altered colonization of tissue in an immunocompromised hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005291

has super-classes
colonization of tissue in an immunocompromised host phenotypec
has sub-classes
decreased colonization of tissue in an immunocompromised hostc, increased colonization of tissue in an immunocompromised hostc

altered colonization of tissue in an immunocompromised mousec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005305

has super-classes
colonization of tissue in an immunocompromised mouse phenotypec
has sub-classes
decreased colonization of tissue in an immunocompromised mousec, increased colonization of tissue in an immunocompromised mousec

altered colonization of tissue in an immunocompromised rabbitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005319

has super-classes
colonization of tissue in an immunocompromised rabbit phenotypec
has sub-classes
decreased colonization of tissue in an immunocompromised rabbitc, increased colonization of tissue in an immunocompromised rabbitc

altered colony morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007160

has super-classes
colony morphology phenotypec
altered microbial phenotypec
altered population morphologyc
has sub-classes
altered colony size phenotypec, more convex colonyc, more irregular colony marginc

altered colony pigmentationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007151

has super-classes
colony pigmentation phenotypec

altered colony size phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006164

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
colony size phenotypec
altered colony morphologyc
has sub-classes
decreased colony sizec, increased colony sizec

altered conjugationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007416

has super-classes
conjugation phenotypec
has sub-classes
conjugation without glucose starvationc, conjugation without nitrogen starvationc, decreased conjugationc, increased conjugationc

altered corec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008033

has super-classes
endospore core phenotypec

altered correlation between nucleoid and cell constriction during cell divisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000303

has super-classes
altered nucleoid constriction during cell divisionc
has sub-classes
decreased correlation between nucleoid and cell constriction during cell divisionc, increased correlation between nucleoid and cell constriction during cell divisionc

altered cytokinesisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007166

has super-classes
cytokinesis phenotypec

altered cytoskeletonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007752

has super-classes
altered subcellular component phenotypec
has sub-classes
altered actin cytoskeletonc, altered cytoskeleton morphology phenotypec

altered cytoskeleton morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005181

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cytoskeleton morphology phenotypec
altered cytoskeletonc
has sub-classes
altered actin cytoskeleton morphologyc

altered decarboxylase test resultc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006079

has super-classes
decarboxylase test phenotypec
altered differential test resultc
has sub-classes
decreased decarboxylase activityc, increased decarboxylase activityc

altered degree of nucleoid constriction at the onset of cell constrictionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000314

This is a population average.
has super-classes
altered nucleoid constriction during cell divisionc
has sub-classes
decreased degree of nucleoid constriction at the onset of cell constrictionc, increased degree of nucleoid constriction at the onset of cell constrictionc

altered diazonium blue B stainingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007297

has super-classes
diazonium blue B staining phenotypec
altered cell staining phenotypec
has sub-classes
decreased diazonium blue B stainingc, increased diazonium blue B stainingc

altered differential test resultc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007131

has super-classes
altered microbial phenotypec
differential test phenotypec
has sub-classes
altered catalase test resultc, altered decarboxylase test resultc, altered hemolysis test resultc, altered laccase activityc, altered oxidase test resultc, altered urease test resultc

altered dinitrogen utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007190

has super-classes
dinitrogen utilization phenotypec
altered nitrogen source utilizationc
has sub-classes
decreased utilization of dinitrogenc, increased utilization of dinitrogenc

altered DNA replicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007147

is equivalent to
DNA replication phenotypec and (has_qualityop some altered_process_qualityc)
has super-classes
DNA replication phenotypec
altered cell cyclec
altered biological processc
has_qualityop some altered_process_qualityc
has sub-classes
origin-independent replicationc, over-initiation of DNA replicationc, quick-stop DNA replicationc, slow-stop DNA replicationc

altered DNA supercoilingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006126

has super-classes
DNA supercoiling phenotypec
has sub-classes
Increased negative supercoilingc, decreased negative supercoilingc, decreased positive supercoilingc, increased positive supercoilingc

altered drug-dependence of population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007267

has super-classes
altered population growthc
drug-dependent population growth phenotypec
has sub-classes
decreased drug-dependence of population growthc, increased drug-dependence of population growthc

altered effects of pH on population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007138

has super-classes
pH effects on population growth phenotypec
has sub-classes
decreased population growth at acidic pHc, decreased population growth at alkaline pHc, increased population growth at acidic pHc, increased population growth at alkaline pHc

altered endocytosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005262

has super-classes
endocytosis phenotypec
has sub-classes
decreased endocytosisc, delayed onset of endocytosisc, increased endocytosisc

altered endomembrane system morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005271

has super-classes
endomembrane system morphology phenotypec

altered endospore coatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008027

has super-classes
endospore coat phenotypec

altered endospore cortexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008029

has super-classes
endospore cortex phenotypec

altered endospore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006161

is equivalent to
endospore formation phenotypec and (has_qualityop some altered_relative_toc)
has super-classes
endospore formation phenotypec
altered asexual sporulationc
has_qualityop some altered_relative_toc
has sub-classes
decreased endospore formationc, increased endospore formationc, interrupted endospore formationc

altered endospore germ cell wallc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008030

has super-classes
endospore germ cell wall phenotypec

altered endospore morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007513

has super-classes
endospore morphology phenotypec
altered spore morphologyc

altered enzymatic activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005130

is equivalent to
enzymatic activity phenotypec and (has_qualityop some altered_relative_toc)
has super-classes
enzymatic activity phenotypec
altered microbial phenotypec
has_qualityop some altered_relative_toc
has sub-classes
altered ferric reductase activityc, altered laccase activityc, altered phosphatase activityc, altered phospholipase activityc, altered protein kinase A activityc, altered superoxide dismutase activityc, decreased catalytic activityc, increased enzymatic activityc

altered epoxide resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007498

has super-classes
altered resistance to an antimicrobial agentc
epoxide resistance phenotypec
has sub-classes
decreased resistance to an epoxidec, increased resistance to an epoxidec

altered exosporiumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008031

has super-classes
endospore exosporium phenotypec

altered ferric reductase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005150

has super-classes
altered enzymatic activityc
ferric reductase activity phenotypec
has sub-classes
decreased ferric reductase activityc, increased ferric reductase activityc

altered filamentous growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005244

has super-classes
filamentous growth phenotypec
has sub-classes
decreased filamentous growthc, increased filamentous growthc

altered flagellumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007105

has super-classes
flagellum morphology phenotypec
has sub-classes
altered flagellum lengthc, altered flagellum shapec, altered number of flagellac

altered flagellum lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000024

has super-classes
altered flagellumc
has sub-classes
decreased flagellum lengthc, increased flagellum lengthc

altered flagellum shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000031

has super-classes
altered flagellumc

altered flocculationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007465

has super-classes
flocculation phenotypec
altered liquid culture morphologyc
has sub-classes
decreased flocculationc, increased flocculationc

altered fosfomycin resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007858

has super-classes
altered resistance to an antimicrobial agentc
fosfomycin resistance phenotypec
has sub-classes
decreased resistance to fosfomycinc, increased resistance to fosfomycinc

altered fraction of cells with one nucleoidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000293

has super-classes
nucleoid number phenotypec
has sub-classes
decreased fraction of cells with one nucleoidc, increased fraction of cells with one nucleoidc

altered fraction of cells with two nucleoidsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000300

has super-classes
nucleoid number phenotypec
has sub-classes
decreased fraction of cells with two nucleoidsc, increased fraction of cells with two nucleoidsc

altered fraction of non-constricted cellsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000287

has super-classes
altered cell division during cell population growthc
has sub-classes
decreased fraction of non-constricted cellsc, increased fraction of non-constricted cellsc

altered frequency of DNA breaksc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007605

has super-classes
DNA break phenotypec
has sub-classes
decreased frequency of DNA breaksc, increased frequency of DNA breaksc

altered frequency of Holliday junction structuresc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007620

has super-classes
Holliday junction structure phenotypec
has sub-classes
decreased frequency of Holliday junction structuresc, increased frequency of Holliday junction structuresc

altered frequency of reversing direction of flagellar rotationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007275

has super-classes
altered taxisc

altered gene expressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007080

is equivalent to
gene expression phenotypec and (has_qualityop some altered_process_qualityc)
has super-classes
gene expression phenotypec
altered microbial phenotypec
has_qualityop some altered_process_qualityc
has sub-classes
altered transcriptionc, altered translationc, decreased gene expressionc, increased gene expressionc

altered gene expression regulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007203

has super-classes
altered microbial phenotypec
gene expression regulation phenotypec

altered gene silencingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006003

has super-classes
gene silencing phenotypec
has sub-classes
decreased frequency of gene silencingc, increased frequency of gene silencingc

altered germ tube morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007739

has super-classes
germ tube morphology phenotypec
has sub-classes
curved germ tube morphologyc, elongated germ tube morphologyc, unseptated germ tubec

altered golgi morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005239

has super-classes
golgi apparatus morphology phenotypec

altered growth factor requirementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007079

has super-classes
growth factor requirement phenotypec
altered nutrient utilizationc
has sub-classes
altered amino acid requirementc, altered purine requirementc, altered pyrimidine requirementc, altered vitamin/enzyme cofactor requirementc, decreased growth factor requirementc, increased growth factor requirementc

altered heme utilization phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007088

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
heme utilization phenotypec
has sub-classes
decreased heme utilizationc, increased heme utilizationc

altered hemolysis test resultc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000206

has super-classes
hemolysis testc
altered differential test resultc
has sub-classes
decreased hemolysisc, increased hemolysisc

altered heterocyst formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006007

has super-classes
heterocyst formation phenotypec
altered cell developmentc
has sub-classes
decreased heterocyst formationc, increased heterocyst formationc

altered homologous recombinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006002

has super-classes
homologous recombination phenotypec
has sub-classes
decreased frequency of homologous recombinationc, increased frequency of homologous recombinationc

altered host-virus interactionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007242

has super-classes
host-virus interaction phenotypec
altered microbial phenotypec
has sub-classes
altered bacteriophage sensitivityc

altered induced expression of the SOS responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005053

has super-classes
altered SOS response phenotypec
has sub-classes
decreased induced expression of the SOS responsec, increased induced expression of the SOS responsec

altered inner endospore membranec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008034

has super-classes
inner endospore membrane phenotypec

altered inorganic phosphorus source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007213

has super-classes
inorganic phosphorus source utilizationc
altered phosphorus source utilizationc
has sub-classes
decreased utilization of inorganic phosphorus sourcec, increased utilization of inorganic phosphorus sourcec

altered internalization by macrophagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000372

has super-classes
internalization by macrophage phenotypec
has sub-classes
decreased internalization by macrophagec, increased internalization by macrophagec

altered iron source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007087

has super-classes
iron source utilization phenotypec
altered nutrient utilizationc

altered laccase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007288

has super-classes
altered enzymatic activityc
altered differential test resultc
laccase activity phenotypec
has sub-classes
decreased laccase activityc, increased laccase activityc

altered lantibiotic resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007139

has super-classes
lantibiotic resistance phenotypec
altered bacteriocin resistancec
has sub-classes
decreased resistance to lantibioticc, increased resistance to lantibioticc

altered lethalityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007397

has super-classes
lethality phenotypec
altered microbe-host interactionc
has sub-classes
altered lethality in an amoeba hostc, altered lethality in an invertebrate hostc, decreased lethalityc, increased lethalityc

altered lethality in an amoeba hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007527

has super-classes
altered lethalityc
has sub-classes
decreased lethality in an amoeba hostc, increased lethality in an amoeba hostc

altered lethality in an invertebrate hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007526

has super-classes
altered lethalityc

altered level of cellular reactive oxygen speciesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007660

has super-classes
level of cellular reactive oxygen species phenotypec
has sub-classes
decreased level of cellular reactive oxygen speciesc, increased level of cellular reactive oxygen speciesc

altered level of substance in cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007634

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
has super-classes
altered cellular physical quality phenotypec
level of substance in cell phenotypec
has sub-classes
altered polysaccharide levelc, altered protein levelc

altered lifespan phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006033

has super-classes
lifespan phenotypec
has sub-classes
decreased lifespanc, increased lifespanc

altered liquid culture morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007469

has super-classes
liquid culture morphology phenotypec
altered population morphologyc
has sub-classes
altered flocculationc

altered matingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005352

has super-classes
mating phenotypec
has sub-classes
decreased matingc, increased matingc

altered mating efficiencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005357

has super-classes
mating efficiency phenotypec
has sub-classes
decreased mating efficiencyc, increased mating efficiencyc

altered meiotic nuclear divisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007564

has super-classes
altered cellular processc
meiotic nuclear division phenotypec
has sub-classes
abolished meiotic nuclear divisionc

altered microaerophilic population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005257

has super-classes
microaerophilic population growth phenotypec
has sub-classes
decreased microaerophilic population growthc, increased microaerophilic population growthc

altered microbe-host interactionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007403

has super-classes
microbe-host interaction phenotypec
altered microbial phenotypec
has sub-classes
altered colonization of a hostc, altered lethalityc, altered resistance to killing by hostc, altered survival in macrophagec

altered microbial cell viabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007260

is equivalent to
microbial cell viability phenotypec and (has_qualityop some altered_relative_toc)
has super-classes
microbial cell viability phenotypec
altered cellular physical quality phenotypec
has_qualityop some altered_relative_toc
has sub-classes
altered spore viabilityc, altered vegetative cell viabilityc, decreased cell viabilityc, increased cell viabilityc, viable but nonculturable cellc

altered microbial phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007085

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
microbial phenotypec and (has_qualityop some altered_relative_toc)
has super-classes
microbial phenotypec
has_qualityop some altered_relative_toc
has sub-classes
altered biofilm formationc, altered biological processc, altered cell arrangementc, altered cell cyclec, altered cell morphologyc, altered cell phenotypec, altered cell staining phenotypec, altered colony morphologyc, altered differential test resultc, altered enzymatic activityc, altered gene expressionc, altered gene expression regulationc, altered host-virus interactionc, altered microbe-host interactionc, altered motilityc, altered natural competencec, altered nutrient utilizationc, altered protein activity phenotypec, altered spore germination efficiencyc, altered taxisc

altered microtubule cytoskeletonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007761

has super-classes
microtubule cytoskeleton phenotypec

altered microtubule cytoskeleton morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007764

has super-classes
microtubule cytoskeleton phenotypec

altered mitomycin resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007652

has super-classes
altered resistance to an antimicrobial agentc
mitomycin resistance phenotypec
has sub-classes
decreased resistance to mitomycinc, increased resistance to mitomycinc

altered mitotic cell cyclec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007728

has super-classes
altered cell cyclec

altered mitotic recombinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005044

has super-classes
mitotic recombination phenotypec
has sub-classes
decreased mitotic recombinationc, increased mitotic recombinationc

altered motilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007001

is equivalent to
motility phenotypec and (has_qualityop some altered_relative_toc)
has super-classes
motility phenotypec
altered microbial phenotypec
has_qualityop some altered_relative_toc
has sub-classes
altered cell motility by swarmingc, altered cell motility by swimmingc, altered cell motility by twitchingc, altered motility by glidingc, decreased motilityc, increased motilityc

altered motility by glidingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007492

has super-classes
altered motilityc
has sub-classes
decreased motility by glidingc, increased motility by glidingc

altered mucoid colony phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007321

has super-classes
mucoid colony surface phenotypec
has sub-classes
decreased mucoidyc, increased mucoidyc

altered multiple fissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006174

has super-classes
multiple fission phenotypec
altered asexual reproductionc
has sub-classes
altered schizogenyc, decreased multiple fissionc, increased multiple fissionc

altered mutation frequencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006071

has super-classes
mutation frequency phenotypec
has sub-classes
decreased mutation frequencyc, increased mutation frequencyc

altered myxospore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006009

is equivalent to
myxospore formation phenotypec and (has_qualityop some altered_process_qualityc)
has super-classes
myxospore formation phenotypec
altered asexual sporulationc
has_qualityop some altered_process_qualityc
has sub-classes
decreased myxospore formationc, increased myxospore formationc

altered nanotube phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006162

has super-classes
nanotube phenotypec

altered natural competencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008037

has super-classes
altered microbial phenotypec
natural competence phenotypec
has sub-classes
decreased natural competencec, increased natural competencec

altered nitrofuran resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007824

has super-classes
altered resistance to an antimicrobial agentc
nitrofuran resistance phenotypec
has sub-classes
decreased resistance to nitrofuranc, increased resistance to nitrofuranc

altered nitrogen source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007905

has super-classes
nitrogen source utilization phenotypec
altered nutrient utilizationc
has sub-classes
altered dinitrogen utilizationc, altered organic nitrogen source utilizationc, altered utilization of inorganic nitrogen sourcec

altered nuclear morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007340

has super-classes
altered cell morphologyc
nuclear morphology phenotypec

altered nuclear positionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007345

is equivalent to
nuclear position phenotypec and (has_qualityop some altered_relative_toc)
has super-classes
altered cell morphologyc
nuclear position phenotypec
has_qualityop some altered_relative_toc

altered nucleoid areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000260

has super-classes
nucleoid area phenotypec
has sub-classes
decreased nucleoid areac, increased nucleoid areac

altered nucleoid area variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000263

has super-classes
altered cell population phenotypec
has sub-classes
decreased nucleoid area variabilityc, increased nucleoid area variabilityc

altered nucleoid constriction during cell divisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000347

This is a cell population average.
has super-classes
altered cell population phenotypec
nucleoid constriction during cell division phenotypec
has sub-classes
altered correlation between nucleoid and cell constriction during cell divisionc, altered degree of nucleoid constriction at the onset of cell constrictionc

altered nucleoid number phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000351

has super-classes
nucleoid number phenotypec

altered number ofc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002083

has super-classes
has number ofc
has sub-classes
has extra parts of typec, lacks parts or has fewer parts of typec

altered number of flagellac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007432

has super-classes
altered flagellumc
has sub-classes
decreased number of flagellac, increased number of flagellac

altered nutrient import phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007015

has super-classes
nutrient import phenotypec
altered nutrient utilizationc
has sub-classes
decreased nutrient importc

altered nutrient utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007104

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
nutrient utilization phenotypec
altered microbial phenotypec
has sub-classes
altered carbon source utilizationc, altered growth factor requirementc, altered iron source utilizationc, altered nitrogen source utilizationc, altered nutrient import phenotypec, altered phosphorus source utilizationc, altered trace element utilizationc

altered organic aromatic compound resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005344

has super-classes
organic aromatic compound resistance phenotypec
has sub-classes
decreased resistance to organic aromatic compoundsc, increased resistance to organic aromatic compoundsc

altered organic heterocyclic compound resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005275

has super-classes
organic heterocyclic compound resistance phenotypec
altered resistance to an antimicrobial agentc
has sub-classes
decreased resistance to organic heterocyclic compoundc, increased resistance to organic heterocyclic compoundc

altered organic nitrogen source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007906

has super-classes
organic nitrogen source utilization phenotypec
altered nitrogen source utilizationc
has sub-classes
decreased organic nitrogen source utilizationc, increased organic nitrogen source utilizationc

altered organic phosphorus source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007214

has super-classes
organic phosphorus source utilizationc
altered phosphorus source utilizationc
has sub-classes
decreased utilization of organic phosphorus sourcec, increased utilization of organic phosphorus sourcec

altered osmotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005371

has super-classes
osmotaxis phenotypec
altered taxisc
has sub-classes
decreased osmotaxisc, increased osmotaxisc

altered outer membranec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008032

has super-classes
outer endospore membrane phenotypec

altered outer membrane vesicle productionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007129

has super-classes
altered outer membrane vesiclesc
has sub-classes
decreased outer membrane vesicle productionc, increased outer membrane vesicle productionc

altered outer membrane vesiclesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006156

has super-classes
outer membrane vesicles phenotypec
has sub-classes
altered outer membrane vesicle productionc

altered oxidase test resultc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006083

has super-classes
oxidase test phenotypec
altered differential test resultc
has sub-classes
decreased oxidase activityc, increased oxidase activityc

altered persister cell phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007153

has super-classes
persister cell phenotypec
altered population growthc
has sub-classes
decreased frequency of persister cellsc, increased frequency of persister cellsc

altered phosphatase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005162

has super-classes
altered enzymatic activityc
phosphatase activity phenotypec
has sub-classes
decreased phosphatase activityc, increased phosphatase activityc

altered phospholipase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005028

has super-classes
phospholipase activity phenotypec
altered enzymatic activityc
has sub-classes
decreased phospholipase activityc, increased phospholipase activityc

altered phosphorus source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007212

has super-classes
phosphorus source utilization phenotypec
altered nutrient utilizationc
has sub-classes
altered inorganic phosphorus source utilizationc, altered organic phosphorus source utilizationc

altered pilus phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006010

has super-classes
pilus morphology phenotypec
has sub-classes
decreased number of pilic, increased number of pilic, malformed pilusc

altered plaque appearancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008051

has super-classes
altered plaque morphology phenotypec
has sub-classes
altered to bull's eye plaque appearancec, altered to fuzzy edge plaque appearancec, clearer plaque appearancec, more turbid plaque appearancec

altered plaque morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008045

altered plaque morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008048

has super-classes
sensitive to bacteriophagec
has sub-classes
altered plaque appearancec, altered plaque size phenotypec

altered plaque size phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008046

altered plaque size phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008049

has super-classes
altered plaque morphology phenotypec
has sub-classes
decreased plaque size phenotypec, increased plaque size phenotypec

altered polysaccharide levelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007636

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
has super-classes
altered level of substance in cellc
has sub-classes
altered cell wall chitin levelc

altered population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007157

has super-classes
population growth phenotypec
altered biological processc
altered population phenotypec
has sub-classes
altered asexual reproductionc, altered cell population growthc, altered drug-dependence of population growthc, altered persister cell phenotypec, altered population growth at low temperaturec, altered population growth rangec, altered population growth ratec, altered resistance to chemicalc, altered resistance to stressc, altered response to stress phenotypec, altered vegetative population growthc, decreased population growthc, increased population growthc

altered population growth - duplicate termc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007550

altered population growth at high temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007952

has super-classes
temperature effects on population growth phenotypec
altered population growth rangec
has sub-classes
decreased population growth at high temperaturec, increased population growth at high temperaturec

altered population growth at low temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007958

has super-classes
temperature effects on population growth phenotypec
altered population growthc
has sub-classes
decreased population growth at low temperaturec, increased population growth at low temperaturec

altered population growth in high osmolarityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007519

has super-classes
population growth in high osmolarity phenotypec
altered population growth rangec
has sub-classes
decreased population growth in high osmolarityc, increased population growth in high osmolarityc

altered population growth on defined mediumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007775

has super-classes
population growth on defined medium phenotypec
has sub-classes
decreased population growth on defined mediumc, increased population growth on defined mediumc

altered population growth rangec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007523

has super-classes
altered population growthc
effect of non-nutrient environmental factors on population growth phenotypec
has sub-classes
altered population growth at high temperaturec, altered population growth in high osmolarityc

altered population growth ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007115

has super-classes
population growth rate phenotypec
altered population growthc
has sub-classes
altered vegetative cell population growth ratec, decreased population growth ratec, increased population growth ratec

altered population growth yieldc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007642

has super-classes
population growth yield phenotypec
has sub-classes
decreased population growth yieldc, increased population growth yieldc

altered population morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007470

has super-classes
population morphology phenotypec
altered population phenotypec
has sub-classes
altered colony morphologyc, altered liquid culture morphologyc

altered population phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007931

has super-classes
population phenotypec
has sub-classes
altered cell population phenotypec, altered population growthc, altered population morphologyc

altered protein activity phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007279

has super-classes
altered microbial phenotypec

altered protein kinase A activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005156

has super-classes
altered enzymatic activityc
protein kinase A activity phenotypec
has sub-classes
decreased protein kinase A activityc, increased protein kinase A activityc

altered protein levelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007635

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
has super-classes
altered level of substance in cellc
has sub-classes
altered cell wall protein levelc

altered protein localizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005333

has super-classes
protein localization phenotypec

altered protein secretionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007347

has super-classes
protein secretion phenotypec
has sub-classes
decreased protein secretionc, increased protein secretionc

altered pteridine resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006032

has super-classes
pteridine resistance phenotypec
altered resistance to an antimicrobial agentc
has sub-classes
decreased resistance to pteridinec, increased resistance to pteridinec

altered purine requirementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007081

has super-classes
purine requirementc
altered growth factor requirementc
has sub-classes
decreased purine requirementc, increased purine requirementc

altered pyrimidine requirementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007387

has super-classes
altered growth factor requirementc
pyrimidine requirementc
has sub-classes
decreased pyrimidine requirementc, increased pyrimidine requirementc

altered quinolone resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005034

has super-classes
quinolone resistance phenotypec
altered resistance to an antimicrobial agentc
has sub-classes
decreased resistance to quinolonec, increased resistance to quinolonec

altered quorum sensing phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006093

has super-classes
quorum sensing phenotypec
has sub-classes
decreased quorum sensingc, increased quorum sensingc

altered resistance to a chelatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007911

has super-classes
altered resistance to chemicalc
chelator resistance phenotypec
has sub-classes
decreased resistance to a chelatorc, increased resistance to a chelatorc

altered resistance to a metalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007889

has super-classes
altered resistance to chemicalc
metal resistance phenotypec
has sub-classes
decreased resistance to a metalc, increased resistance to a metalc

altered resistance to a nucleosidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007361

has super-classes
altered resistance to an antimicrobial agentc
nucleoside resistance phenotypec
has sub-classes
Increased resistance to a nucleosidec, decreased resistance to a nucleosidec

altered resistance to a sulfonamide antimicrobial agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007831

has super-classes
altered resistance to an antimicrobial agentc
sulfonamide antimicrobial agent resistance phenotypec
has sub-classes
decreased resistance to sulfonamdec, increased resistance to sulfonamidec

altered resistance to a surfactantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007894

has super-classes
altered resistance to chemicalc
surfactant resistance phenotypec
has sub-classes
decreased resistance to a surfactantc, increased resistance to a surfactantc

altered resistance to a urea derivativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007536

The original term was deemed to be too granular and was replaced with OMP:0007248 ! altered resistance to chemical. When using this term for annotation, enter a database identifier for the specific chemical in the Annotation Extension field.

altered resistance to A22c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007875

This term and was deemed to be too granular. In its place, use OMP:0007134 altered resistance to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field.

altered resistance to acidic pH stress phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005118

has super-classes
altered resistance to stressc
resistance to pH shock phenotypec
has sub-classes
decreased resistance to acidic pH stressc, increased resistance to acidic pH stressc

altered resistance to alkaline pH stress phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005119

has super-classes
altered resistance to stressc
resistance to alkaline pH stress phenotypec
has sub-classes
decreased resistance to alkaline pH stressc, increased resistance to alkaline pH stressc

altered resistance to an acridinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007368

has super-classes
altered resistance to an antimicrobial agentc
acridine antimicrobial agent resistance phenotypec
has sub-classes
decreased resistance to an acridinec, increased resistance to an acridinec

altered resistance to an alkylating agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007375

has super-classes
altered resistance to chemicalc
alkylating agent resistance phenotypec
has sub-classes
decreased resistance to alkylating agentc, increased resistance to alkylating agentc

altered resistance to an antimicrobial agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007134

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
antimicrobial agent resistance phenotypec and (has_qualityop some altered_process_qualityc)
has super-classes
antimicrobial agent resistance phenotypec
altered resistance to chemicalc
has_qualityop some altered_process_qualityc
has sub-classes
altered alkaloid resistancec, altered aminoglycoside resistancec, altered aminopyrimidine resistancec, altered azole resistancec, altered bacteriocin resistancec, altered beta-lactam resistancec, altered chloramphenicol resistancec, altered epoxide resistancec, altered fosfomycin resistancec, altered mitomycin resistancec, altered nitrofuran resistancec, altered organic heterocyclic compound resistancec, altered pteridine resistancec, altered quinolone resistancec, altered resistance to a nucleosidec, altered resistance to a sulfonamide antimicrobial agentc, altered resistance to an acridinec, altered resistance to macrolidec, altered resistance to phenolsc, altered resistance to quaternary ammonium salt antimicrobial agentc, altered rifamycin resistancec, altered tetracycline resistancec, decreased resistance to an antimicrobial agentc, increased resistance to an antimicrobial agentc

altered resistance to benzamidesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007383

has super-classes
benzamides resistance phenotypec
has sub-classes
decreased resistance benzamidesc, increased resistance to a benzamidec

altered resistance to bicyclomycinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007865

altered resistance to bile acidsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007901

has super-classes
altered resistance to chemicalc
bile acids resistance phenotypec
has sub-classes
decreased resistance to bile acidsc, increased resistance to bile acidsc

altered resistance to chemicalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007248

has super-classes
altered population growthc
chemical resistance phenotypec
has sub-classes
altered resistance to a chelatorc, altered resistance to a metalc, altered resistance to a surfactantc, altered resistance to an alkylating agentc, altered resistance to an antimicrobial agentc, altered resistance to bile acidsc, decreased resistance to a chemicalc, increased resistance to a chemicalc

altered resistance to chemical stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007586

has super-classes
altered resistance to stressc
resistance to chemical stress phenotypec
has sub-classes
altered resistance to SDS-EDTA stressc

altered resistance to cold shockc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007582

has super-classes
altered resistance to stressc
resistance to cold shock phenotypec
has sub-classes
decreased resistance to cold shockc, increased resistance to cold shockc

altered resistance to dessication stress phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005120

has super-classes
altered resistance to stressc
resistance to dessication stress phenotypec
has sub-classes
decreased resistance to dessication stressc, increased resistance to dessication stressc

altered resistance to freeze/thaw stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005121

has super-classes
altered resistance to stressc
resistance to freeze-thaw stress phenotypec
has sub-classes
decreased resistance to freeze/thawing stressc, increased resistance to freeze/thawing stressc

altered resistance to gamma-ray radiationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005123

has super-classes
resistance to gamma-ray radiation phenotypec
altered resistance to radiation stressc
has sub-classes
decreased resistance to gamma-ray radiationc, increased resistance to gamma-ray radiationc

altered resistance to heatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007585

has super-classes
altered resistance to stressc
resistance to heat shock phenotypec
has sub-classes
decreased resistance to heat shockc, increased resistance to heatc

altered resistance to host defense peptidesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007170

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
host defense peptides resistance phenotypec
has sub-classes
decreased resistance to host defense peptidesc, increased resistance to host defense peptidesc

altered resistance to killing by hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005141

has super-classes
resistance to killing by host phenotypec
altered microbe-host interactionc
has sub-classes
decreased resistance to killing by hostc, increased resistance to killing by hostc

altered resistance to macrolidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006031

has super-classes
macrolide resistance phenotypec
altered resistance to an antimicrobial agentc
has sub-classes
decreased resistance to macrolidec, increased resistance to macrolidec

altered resistance to nutrient limitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007935

has super-classes
altered resistance to stressc
resistance to nutrient limitation stress phenotypec
has sub-classes
decreased resistance to nutrient limitationc, increased resistance to nutrient limitationc

altered resistance to oxidative stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005122

has super-classes
resistance to oxidative stress phenotypec
altered resistance to stressc
has sub-classes
decreased resistance to oxidative stressc, increased resistance to oxidative stressc

altered resistance to phenolsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007477

has super-classes
altered resistance to an antimicrobial agentc
phenolic antimicrobial agent resistance phenotypec
has sub-classes
decreased resistance to phenolsc, increased resistance to phenolsc

altered resistance to quaternary ammonium salt antimicrobial agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007484

has super-classes
altered resistance to an antimicrobial agentc
quaternary ammonium salts antimicrobial agent resistance phenotypec
has sub-classes
decreased resistance to quaternary ammonium salt antimicrobial agentc, increased resistance to quaternary ammonium salt antimicrobial agentc

altered resistance to radiation stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007594

has super-classes
altered resistance to stressc
resistance to radiation stress phenotypec
has sub-classes
altered UV-radiation resistancec, altered resistance to gamma-ray radiationc, altered resistance to x-ray radiationc

altered resistance to SDS-EDTA stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005126

has super-classes
altered resistance to chemical stressc
has sub-classes
decreased resistance to SDS-EDTA stressc, increased resistance to SDS-EDTA stressc

altered resistance to stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007572

has super-classes
altered population growthc
resistance to stress phenotypec
has sub-classes
altered resistance to acidic pH stress phenotypec, altered resistance to alkaline pH stress phenotypec, altered resistance to chemical stressc, altered resistance to cold shockc, altered resistance to dessication stress phenotypec, altered resistance to freeze/thaw stressc, altered resistance to heatc, altered resistance to nutrient limitationc, altered resistance to oxidative stressc, altered resistance to radiation stressc

altered resistance to x-ray radiationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005124

has super-classes
resistance to x-ray radiationc
altered resistance to radiation stressc
has sub-classes
decreased resistance to x-ray radiationc, increased resistance to x-ray radiationc

altered response to radiation stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007159

has super-classes
response to radiation stress phenotypec
altered response to stress phenotypec

altered response to stress phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007158

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
response to stress phenotypec
altered population growthc
has sub-classes
altered acid tolerance responsec, altered response to radiation stressc

altered rifamycin resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007216

has super-classes
altered resistance to an antimicrobial agentc
rifamycin resistance phenotypec
has sub-classes
decreased resistance to rifamycinc, increased resistance to rifamycinc

altered schizogenyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007146

has super-classes
altered multiple fissionc
schizogeny phenotypec
has sub-classes
decreased schizogenyc, increased schizogenyc

altered septationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007165

has super-classes
septation phenotypec
has sub-classes
decreased septationc, increased septationc

altered septation indexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007734

has super-classes
septation index phenotypec
has sub-classes
decreased septation indexc, increased septation indexc

altered septum during vegetative growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007768

has super-classes
altered subcellular component phenotype during vegetative growthc
has sub-classes
altered septum morphology during vegetative growthc

altered septum morphology during vegetative growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007769

has super-classes
altered septum during vegetative growthc

altered sexual reproductionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007441

has super-classes
sexual reproduction phenotypec
has sub-classes
altered sexual sporulationc

altered sexual sporulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007435

has super-classes
sexual sporulation phenotypec
altered sexual reproductionc
has sub-classes
altered ascospore formationc, decreased sexual sporulationc, increased sexual sporulationc

altered sexual sporulation frequencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005378

has super-classes
sexual sporulation frequencyc
has sub-classes
decreased sexual sporulation frequencyc, increased sexual sporulation frequencyc

altered site-specific recombinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006005

has super-classes
site-specific recombination phenotypec
has sub-classes
decreased frequency of site-specific recombinationc, increased frequency of site-specific recombinationc

altered SOS response phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005018

has super-classes
SOS response phenotypec
has sub-classes
altered basal expression of the SOS responsec, altered induced expression of the SOS responsec

altered spore germinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007353

has super-classes
spore germination phenotypec
has sub-classes
altered spore germination efficiencyc, delayed spore germinationc

altered spore germination efficiencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007292

is equivalent to
spore germination phenotypec and (has_qualityop some altered_relative_toc)
has super-classes
altered microbial phenotypec
altered spore germinationc
has_qualityop some altered_relative_toc
has sub-classes
decreased spore germination efficiencyc, increased spore germination efficiencyc

altered spore morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007411

has super-classes
altered cell morphologyc
spore morphology phenotypec
has sub-classes
altered akinete morphologyc, altered ascospore morphologyc, altered endospore morphologyc

altered spore viabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007838

has super-classes
altered microbial cell viabilityc
spore viability phenotypec
has sub-classes
decreased spore viabilityc, increased spore viabilityc

altered stress-induced mutagenesisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006034

has super-classes
stress-induced mutagenesis phenotypec
has sub-classes
decreased stress-induced mutagenesisc, increased stress-induced mutagenesisc

altered subcellular component phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007751

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
altered cellular physical quality phenotypec
subcellular component phenotypec
has sub-classes
altered cytoskeletonc

altered subcellular component phenotype during vegetative growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007767

has super-classes
subcellular component phenotype during vegetative growthc
has sub-classes
altered septum during vegetative growthc, multiseptate vegetative cellc

altered sulfur source utilization phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007086

has super-classes
sulfur source utilization phenotypec
has sub-classes
decreased utilization of inorganic sulfurc, decreased utilization of organic sulfur sourcec, increased utilization of inorganic sulfurc, increased utilization of organic sulfurc

altered superoxide dismutase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005168

has super-classes
altered enzymatic activityc
superoxide dismutase activity phenotypec
has sub-classes
decreased superoxide dismutase activityc, increased superoxide dismutase activityc

altered survival in macrophagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007454

has super-classes
altered microbe-host interactionc
survival in macrophage phenotypec
has sub-classes
decreased survival in macrophagec, increased survival in macrophagec

altered taxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007127

is equivalent to
taxis phenotypec and (has_qualityop some altered_relative_toc)
has super-classes
taxis phenotypec
altered microbial phenotypec
has_qualityop some altered_relative_toc
has sub-classes
altered aerotaxisc, altered chemotaxisc, altered frequency of reversing direction of flagellar rotationc, altered osmotaxisc

altered tetracycline resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005029

has super-classes
tetracycline resistance phenotypec
altered resistance to an antimicrobial agentc
has sub-classes
decreased resistance to tetracyclinec, increased resistance to tetracyclinec

altered timing of cell constrictionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000354

has super-classes
timing of cell constriction phenotypec
has sub-classes
decreased relative timing of cell constrictionc, increased relative timing of cell constrictionc

altered timing of nucleoid separationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000355

has super-classes
timing of nucleoid separation phenotypec

altered titan cell formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007510

has super-classes
titan cell formation phenotypec

altered titan cell morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007509

has super-classes
altered cell morphologyc
titan cell morphology phenotypec

altered to bull's eye plaque appearancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008065

has super-classes
altered plaque appearancec

altered to fuzzy edge plaque appearancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008063

Some mutant in phage T4 will cause the edge of the plaque become fuzzy.
has super-classes
altered plaque appearancec

altered tolerance to an antimicrobial agent phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007972

has super-classes
tolerance to an antimicrobial agent phenotypec
has sub-classes
decreased tolerance to an antimicrobial agentc, increased tolerance to an antimicrobial agentc

altered trace element utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007211

has super-classes
trace element utilization phenotypec
altered nutrient utilizationc

altered transcriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007108

is equivalent to
transcription phenotypec and (has_qualityop some altered_process_qualityc)
has super-classes
altered gene expressionc
transcription phenotypec
has_qualityop some altered_process_qualityc
has sub-classes
decreased transcription of gene or operonc, increased transcription of gene or operonc

altered translationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007122

has super-classes
altered gene expressionc
translation phenotypec
has sub-classes
Increased translationc, decreased translationc

altered transportc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007670

has super-classes
transport phenotypec
has sub-classes
decreased transportc, increased transportc

altered transporter activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007678

has super-classes
transporter activity phenotypec
has sub-classes
decreased transporter activityc, increased transporter activityc

altered transposable element transposition phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006013

has super-classes
transposable element transposition phenotypec
has sub-classes
decreased rate of transposable element transpositionc, increased rate of transposable element transpositionc

altered urease test resultc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006088

has super-classes
urease test phenotypec
altered differential test resultc
has sub-classes
decreased urease activityc, increased urease activityc

altered utilization of inorganic nitrogen sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007305

has super-classes
inorganic nitrogen source utilization phenotypec
altered nitrogen source utilizationc
has sub-classes
decreased utilization of inorganic nitrogen sourcec, increased utilization of inorganic nitrogen sourcec

altered UV-radiation resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005125

is equivalent to
resistance to UV radiation phenotypec and (has_qualityop some altered_relative_toc)
has super-classes
resistance to UV radiation phenotypec
altered resistance to radiation stressc
has_qualityop some altered_relative_toc
has sub-classes
decreased resistance to UV radiationc, increased resistance to UV radiationc

altered vacuolar morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005145

has super-classes
vacuolar morphology phenotypec
altered cell morphologyc
has sub-classes
decreased vacuolar sizec, increased vacuolar sizec

altered vegetative cell growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007694

Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
has super-classes
altered cell growthc
vegetative cell growth phenotypec
has sub-classes
decreased vegetative cell growthc, increased vegetative cell growthc

altered vegetative cell lysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007744

has super-classes
vegetative cell lysis phenotypec
altered vegetative cell phenotypec

altered vegetative cell morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007715

has super-classes
altered cell morphologyc
has sub-classes
altered vegetative cell shapec, altered vegetative cell sizec, stubby vegetative cellc

altered vegetative cell phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007746

has super-classes
altered cell phenotypec
vegetative cell phenotypec
has sub-classes
altered vegetative cell lysisc, increased ploidy in a vegetative microbial cellc

altered vegetative cell population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007798

has super-classes
vegetative cell population growth phenotypec
altered cell population growthc
has sub-classes
decreased vegetative cell population growth at high temperaturec

altered vegetative cell population growth ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007801

has super-classes
altered population growth ratec
has sub-classes
decreased vegetative cell population growth ratec, increased vegetative cell population growth ratec

altered vegetative cell population viabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007729

has super-classes
altered cell population viabilityc
has sub-classes
decreased vegetative cell population viabilityc, increased vegetative cell population viabilityc

altered vegetative cell shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007708

has super-classes
altered cell shapec
altered vegetative cell morphologyc
has sub-classes
branching of vegetative cellc, curving vegetative cellc, more rounded vegetative cellc, tapering vegetative cellc

altered vegetative cell sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007713

has super-classes
altered cell sizec
altered vegetative cell morphologyc
has sub-classes
decreased vegetative cell lengthc, decreased vegetative cell volumec, increased vegetative cell diameterc, increased vegetative cell lengthc

altered vegetative cell viabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007724

has super-classes
altered microbial cell viabilityc
has sub-classes
altered viability after microbial spore germinationc, decreased viability of vegetative microbial cellc, increased viability of vegetative microbial cellc

altered vegetative population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007772

has super-classes
altered population growthc

altered viability after microbial spore germinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007941

has super-classes
altered vegetative cell viabilityc

altered virulencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000098

has super-classes
virulence phenotypec
has sub-classes
decreased virulencec, increased virulencec

altered vitamin/enzyme cofactor requirementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007082

has super-classes
vitamin/enzyme cofactor requirementc
altered growth factor requirementc
has sub-classes
decreased vitamin/enzyme cofactor requirementc, increased vitamin/enzyme cofactor requirementc

altered_physical_object_qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007193

is equivalent to
physical object qualityc and (has_qualityop some altered_relative_toc)
has super-classes
physical object qualityc
has_qualityop some altered_relative_toc

altered_process_qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007188

is equivalent to
process qualityc and (has_qualityop some altered_relative_toc)
has super-classes
process qualityc
has_qualityop some altered_relative_toc

altered_relative_toc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007189

has super-classes
qualitativec

amino acid biosynthesis phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000311

has super-classes
small molecule biosynthesis phenotypec

amino acid requirementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007038

has super-classes
requires growth factor(s)c
has sub-classes
altered amino acid requirementc

aminoglycoside antimicrobial agent resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006056

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
altered aminoglycoside resistancec, not resistant to aminoglycosidec, resistant to aminoglycosidec

aminoglycoside dependent growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005101

has super-classes
drug-dependent population growth phenotypec

aminopyrimidine resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000331

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
altered aminopyrimidine resistancec, not resistant to aminopyrimidinec, resistant to aminopyrimidinec

amountc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000070

This term was originally named "presence". It has been renamed to reduce ambiguity. Consider annotating with the reciprocal relation,PATO:0001555, has_number_of. For example, rather than E=fin ray Q=count in organism C=10, say E=organism Q=has number of E2= fin ray C=10.
has super-classes
qualitativec
reciprocal_ofop some has number ofc
has sub-classes
absentc, presentc

amphitrichousc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000080

has super-classes
flagellum arrangement phenotypec

anaerobic population growth phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005189

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
O2 effects on population growth phenotypec
has sub-classes
absence of anaerobic population growthc, altered anaerobic population growthc, presence of anaerobic population growthc

anaerobic respiration phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007072

has super-classes
respiration phenotypec
has sub-classes
absence of anaerobic respirationc, altered anaerobic respirationc, presence of anaerobic respirationc

anaerobic respiration with sulfate as the terminal acceptorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000183

has super-classes
presence of anaerobic respirationc

anatomical structure formation involved in morphogenesisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0048646

Note that, for example, the formation of a pseudopod in an amoeba would not be considered formation involved in morphogenesis because it would not be thought of as the formation of an anatomical structure that was part of the shaping of the amoeba during its development. The formation of an axon from a neuron would be considered the formation of an anatomical structure involved in morphogenesis because it contributes to the creation of the form of the neuron in a developmental sense.
has super-classes
developmental processc
has sub-classes
sporulation resulting in formation of a cellular sporec

antimicrobial agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_33281

has super-classes
biological rolec
pesticidec

antimicrobial agent resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000274

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
microbial phenotypec and (towardsop some antimicrobial agentc)
has super-classes
chemical resistance phenotypec
towardsop some antimicrobial agentc
has sub-classes
acridine antimicrobial agent resistance phenotypec, altered resistance to an antimicrobial agentc, aminoglycoside antimicrobial agent resistance phenotypec, aminopyrimidine resistance phenotypec, azole antimicrobial agent resistance phenotypec, bacteriocin resistance phenotypec, benzamides resistance phenotypec, beta-lactam resistance phenotypec, chloramphenicol resistance phenotypec, epoxide resistance phenotypec, fosfomycin resistance phenotypec, fosmidomycin antimicrobial agent resistance phenotypec, host defense peptides resistance phenotypec, macrolide resistance phenotypec, mitomycin resistance phenotypec, nitrofuran resistance phenotypec, not resistant to an antimicrobial agentc, nucleoside resistance phenotypec, organic aromatic compound resistance phenotypec, organic cyclic antimicrobial agent resistance phenotypec, organic heterocyclic compound resistance phenotypec, phenolic antimicrobial agent resistance phenotypec, pteridine resistance phenotypec, quaternary ammonium salts antimicrobial agent resistance phenotypec, quinolone resistance phenotypec, quinone resistance phenotypec, resistant to an antimicrobial agentc, rifamycin resistance phenotypec, sulfonamide antimicrobial agent resistance phenotypec, tetracycline resistance phenotypec

antimicrobial peptide production phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006105

has super-classes
secondary metabolite production phenotypec
has sub-classes
absence of antimicrobial peptide productionc, altered antimicrobial peptide productionc, presence of antimicrobial peptide productionc

antimicrobial peptide resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007169

anucleoidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000042

has super-classes
nucleoid phenotypec
has sub-classes
increased number of anucleoid cellsc

apoptosis phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007309

has super-classes
cell death phenotypec
has sub-classes
absence of apoptosisc, altered apoptosisc, presence of apoptosisc

applicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_33232

has super-classes
rolec
has sub-classes
pesticidec

archaeal or bacterial-type flagellum-dependent cell motilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0097588

Bacterial- and archaeal-type flagella are superficially similar but have a different molecular composition and fine structure. This term was added for mapping to the UniProt keyword "flagellar rotation". For manual annotation, please use one of the child terms of GO:0097588 that refer specifically to either archaeal- or bacterial-type flagella.
has super-classes
cilium or flagellum-dependent cell motilityc
has sub-classes
bacterial-type flagellum-dependent cell motilityc

aromatic compound biosynthetic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0019438

has super-classes
cellular aromatic compound metabolic processc
cellular biosynthetic processc
has sub-classes
nucleobase-containing compound biosynthetic processc

arrestedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000297

TODO: the definition is incorrect. See absent.
has super-classes
decreased occurrencec
offset qualityc
decreased_in_magnitude_relative_toop some normalc

ascospore formation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007401

has super-classes
sexual sporulation phenotypec
has sub-classes
absence of ascospore formationc, altered ascospore formationc, presence of ascospore formationc

ascospore morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007511

has super-classes
spore morphology phenotypec
has sub-classes
altered ascospore morphologyc

asexual reproductionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0019954

has super-classes
reproductionc
has sub-classes
asexual sporulationc

asexual reproduction phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007066

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
population growth phenotypec and (inheres_inop some asexual reproductionc)
has super-classes
population growth phenotypec
inheres_inop some asexual reproductionc
has sub-classes
altered asexual reproductionc, asexual sporulation phenotypec, binary fission phenotypec, budding phenotypec, haploid fruiting phenotypec, multiple fission phenotypec

asexual sporulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0030436

has super-classes
asexual reproductionc
sporulationc
has sub-classes
asexual sporulation resulting in formation of a cellular sporec

asexual sporulation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007142

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
sporulation phenotypec
asexual reproduction phenotypec
has sub-classes
absence of asexual sporulationc, akinete formation phenotypec, altered asexual sporulationc, conidiation phenotypec, endospore formation phenotypec, myxospore formation phenotypec, presence of asexual sporulationc

asexual sporulation resulting in formation of a cellular sporec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0043936

has super-classes
sporulation resulting in formation of a cellular sporec
asexual sporulationc
has sub-classes
endospore formationc, myxospore formationc

attached lifestyle phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007647

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. May include the expression of pili or other structures used for attachment, antibiotic compounds, extracellular matrix remodelling proteins, and the like.
has super-classes
microbial lifestyle phenotypec
has sub-classes
presence of an attached lifestylec

attachment qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001435

has super-classes
structurec
has sub-classes
detached fromc

autophagic vesicle formation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007334

has super-classes
autophagy phenotypec
has sub-classes
altered autophagic vesicle formationc

autophagy phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007333

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cellular process phenotypec
has sub-classes
altered autophagyc, autophagic vesicle formation phenotypec

auxotrophicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000422

has super-classes
trophic qualityc

azole antimicrobial agent resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006028

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Azoles can also contain one or more other non-carbon atoms, such as nitrogen, sulfur or oxygen. A mancude ring has the maximum number of noncumulative double bonds, e.g. benzene, indole.
has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
altered azole resistancec, not resistant to azolec, resistant to azolec

bacterial-type flagellum-dependent cell motilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0071973

has super-classes
archaeal or bacterial-type flagellum-dependent cell motilityc
has sub-classes
bacterial-type flagellum-dependent swarming motilityc

bacterial-type flagellum-dependent swarming motilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0071978

has super-classes
bacterial-type flagellum-dependent cell motilityc

bacteriocin resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006027

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
altered bacteriocin resistancec, lantibiotic resistance phenotypec, not resistant to bacteriocinc, resistant to bacteriocinc

bacteriocin tolerantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007273

has super-classes
increased resistance to bacteriocinc

bacteriophage sensitivity phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007237

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
host-virus interaction phenotypec
has sub-classes
altered bacteriophage sensitivityc, not sensitive to bacteriophagec, sensitive to bacteriophagec

bending cell morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007683

has super-classes
altered cell morphologyc

bentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000617

has super-classes
shapec
has sub-classes
kinkedc

benzamides resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007380

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
altered resistance to benzamidesc, not resistant to benzamidesc, resistant to benzamidesc

beta-lactam resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000336

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
altered beta-lactam resistancec, not resistant to beta-lactamc, resistant to beta-lactamc

bicyclomycin antimicrobial agent resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007862

The original term and its children were deemed to be too granular and replaced with OMP:0000274 ! antimicrobial agent resistance phenotype and its child terms, which are listed below. When using one of these terms for annotation, enter a database identifier for the specific antimicrobial agent in the Annotation Extension field. OMP:0007876 resistant to an antimicrobial agent OMP:0007877 not resistant to an antimicrobial agent OMP:0007134 altered resistance to an antimicrobial agent OMP:0007878 increased resistance to an antimicrobial agent OMP:000 7879 decreased resistance to an antimicrobial agent OMP:0007880 abolished resistance to an antimicrobial agent

bile acids resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007898

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
chemical resistance phenotypec
has sub-classes
altered resistance to bile acidsc, not resistant to bile acidsc, resistant to bile acidsc

binary fission phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007067

has super-classes
asexual reproduction phenotypec
has sub-classes
absence of binary fissionc, altered binary fissionc, presence of binary fissionc

binucleatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001406

has super-classes
multinucleatec

biofilm architecture phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000248

has super-classes
biofilm formation phenotypec

biofilm formation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000176

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
multi-organism process phenotypec
has sub-classes
absence of biofilm formationc, altered biofilm formationc, biofilm architecture phenotypec, forms single species biofilmc, participates in multi-species biofilmc, presence of biofilm formationc

biological process phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007194

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
microbial phenotypec and (inheres_inop some biological_processc)
has super-classes
microbial phenotypec
inheres_inop some biological_processc
has sub-classes
adhesion phenotypec, altered biological processc, cell-cell self recognition phenotypec, cellular process phenotypec, chromosome segregation phenotypec, gene expression phenotypec, gene silencing phenotypec, growth phenotypec, locomotion phenotypec, population growth phenotypec, protein secretion phenotypec, response to stress phenotypec, transposable element transposition phenotypec

biological regulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0065007

has super-classes
biological_processc
has sub-classes
regulation of biological processc

biological rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_24432

has super-classes
rolec
has sub-classes
antimicrobial agentc

biological_processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0008150

Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. Note that when this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this.
has sub-classes
biological regulationc, cellular processc, developmental processc, growthc, localizationc, locomotionc, metabolic processc, reproductionc, response to stimulusc, single-organism processc

biosynthetic phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000309

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
metabolic phenotypec
has sub-classes
macromolecular biosynthesis phenotypec, small molecule biosynthesis phenotypec

biosynthetic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0009058

has super-classes
metabolic processc
has sub-classes
cellular biosynthetic processc, organic substance biosynthetic processc, single-organism biosynthetic processc

branchedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000402

has super-classes
branchinessc

branchinessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002009

has super-classes
shapec
has sub-classes
branchedc, unbranchedc

branching of vegetative cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007712

has super-classes
altered vegetative cell shapec

brokenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001444

has super-classes
wholenessc

bud morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007327

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cell morphology phenotypec
has sub-classes
altered bud morphologyc, bud neck morphologyc

bud neck morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007329

has super-classes
bud morphology phenotypec
has sub-classes
altered bud neck morphologyc

budding phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000089

has super-classes
asexual reproduction phenotypec
has sub-classes
absence of buddingc, altered buddingc, presence of buddingc

bulging cell morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007666

has super-classes
altered cell morphologyc

bull's eye plaque appearancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008064

T7 will create bull's eye plaque on e.coli Hfr strain.
has super-classes
plaque appearance phenotypec

bull's eye plaque appearance morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008062

butyrous colony consistencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000234

has super-classes
colony consistency phenotypec

C-shapedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0015019

has super-classes
concave 3-D shapec

caffeine resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000456

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
alkaloid chemical resistance phenotypec
has sub-classes
altered caffeine resistancec, not resistant to caffeinec, resistant to caffeinec

capsid morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005386

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
virion morphology phenotypec
has sub-classes
polyhedral shapec

capsule phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000203

has super-classes
cell envelope morphology phenotypec
has sub-classes
absence of capsulec, altered capsule morphologyc, altered capsule phenotypec, presence of capsulec

carbon dioxide productionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000225

has super-classes
chemical production phenotypec

carbon source utilization phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006023

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
nutrient utilization phenotypec
has sub-classes
absence of inorganic carbon source utilizationc, absence of organic carbon source utilizationc, altered carbon source utilizationc, mixotrophic carbon source utilizationc, presence of inorganic carbon source utilizationc, presence of organic carbon source utilizationc

catalase negativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000198

has super-classes
catalase test phenotypec
has sub-classes
abolished catalase activityc

catalase positivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000194

has super-classes
catalase test phenotypec

catalase test phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000218

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Catalysis of the reaction: 2 hydrogen peroxide = O2 + 2 H2O [EC:1.11.1.6].
has super-classes
differential test phenotypec
has sub-classes
altered catalase test resultc, catalase negativec, catalase positivec

cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0005623

has super-classes
cellular_componentc

cell area phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000319

has super-classes
cell size phenotypec
has sub-classes
altered cell areac

cell area variability phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000360

has super-classes
cell size variabilityc

cell arrangement phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000003

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbial phenotypec
has sub-classes
altered cell arrangementc, diplococcusc, filamentousc, sarcinac, sheathedc, staphylococcusc, streptobacillusc, streptococcusc, tetradc, trichome-formingc

cell aspect ratio phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000338

has super-classes
cell shape phenotypec
has sub-classes
altered cell aspect ratioc

cell aspect ratio variability phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000366

has super-classes
cell size variabilityc

cell circularity phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000333

has super-classes
cell shape phenotypec
has sub-classes
altered cell circularityc

cell circularity variability phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000365

has super-classes
cell size variabilityc

cell cycle DNA replicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044786

has super-classes
DNA replicationc
cell cycle processc
single-organism biosynthetic processc

cell cycle phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005115

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cellular process phenotypec
has sub-classes
DNA replication phenotypec, altered cell cyclec, cytokinesis phenotypec

cell cycle processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0022402

has super-classes
single-organism cellular processc
has sub-classes
cell cycle DNA replicationc

cell death phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007308

has super-classes
cellular process phenotypec
has sub-classes
altered cell deathc, apoptosis phenotypec, cell lysis phenotypec

cell development phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000070

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
microbial phenotypec and (inheres_inop some cellular developmental processc)
has super-classes
cellular process phenotypec
inheres_inop some cellular developmental processc
has sub-classes
altered cell developmentc, heterocyst formation phenotypec, spore germination phenotypec, sporulation phenotypec

cell diameter phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000317

has super-classes
cell size phenotypec
has sub-classes
altered cell diameterc

cell diameter variability phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000359

has super-classes
cell size variabilityc

cell differentiationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0030154

has super-classes
cellular developmental processc
has sub-classes
heterocyst differentiationc, sporulation resulting in formation of a cellular sporec

cell division during cell population growth phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000349

has super-classes
cell population growth phenotypec
has sub-classes
altered cell division during cell population growthc, timing of cell constriction phenotypec, timing of nucleoid separation phenotypec

cell division ratio variability phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000368

has super-classes
cell population growth phenotypec

cell envelope morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000085

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
cell morphology phenotypec and (inheres_inop some envelopec)
has super-classes
cell morphology phenotypec
inheres_inop some envelopec
has sub-classes
capsule phenotypec, cell wall morphology phenotypec, outer membrane phenotypec, outer membrane vesicles phenotypec

cell fusion during mating phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005226

has super-classes
cell fusion phenotypec
mating phenotypec
has sub-classes
absence of cell fusion during matingc, altered cell fusion during matingc, presence of cell fusion during matingc

cell fusion phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005219

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cellular process phenotypec
has sub-classes
altered cell fusionc, cell fusion during mating phenotypec, presence of cell fusionc

cell glidingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0071976

has super-classes
cell motilityc

cell growth phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007684

has super-classes
growth phenotypec
cellular process phenotypec
has sub-classes
absence of cell growthc, altered cell growthc, presence of cell growthc, vegetative cell growth phenotypec

cell length phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000322

has super-classes
cell size phenotypec
has sub-classes
altered cell lengthc

cell length variability phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000358

has super-classes
cell size variabilityc

cell lysis phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005336

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cell death phenotypec
has sub-classes
absence of cell lysisc, altered cell lysisc, presence of cell lysisc, vegetative cell lysis phenotypec

cell morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000071

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
microbial phenotypec and (inheres_inop some cellc) and (has_qualityop some morphologyc)
has super-classes
cellular component phenotypec
cellular physical quality phenotypec
has_qualityop some morphologyc
inheres_inop some cellc
has sub-classes
altered cell morphologyc, bud morphology phenotypec, cell envelope morphology phenotypec, cell projection morphology phenotypec, cell shape phenotypec, cell size phenotypec, germ tube morphology phenotypec, nuclear morphology phenotypec, nuclear position phenotypec, spore morphology phenotypec, titan cell morphology phenotypec, vacuolar morphology phenotypec

cell morphology variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000272

has super-classes
cell population phenotypec
has sub-classes
cell shape variability phenotypec, cell size variabilityc, nucleoid area variability phenotypec

cell motilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0048870

has super-classes
cellular component movementc
locomotionc
has sub-classes
cell glidingc, cell swimmingc, cilium or flagellum-dependent cell motilityc, type IV pilus-dependent motilityc

cell partc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044464

Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
has super-classes
cellular_componentc
part_ofop some cellc
has sub-classes
cell projectionc, envelopec

cell perimeter length phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000324

has super-classes
cell size phenotypec
has sub-classes
altered cell perimeter lengthc

cell perimeter length variability phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000363

has super-classes
cell size variabilityc

cell phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007632

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbial phenotypec
has sub-classes
altered cell phenotypec, cellular physical quality phenotypec, vegetative cell phenotypec

cell population growth during nutrient limitation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007964

has super-classes
cell population growth phenotypec
has sub-classes
absence of cell population growth during nutrient limitationc, altered cell population growth during nutrient limitationc, presence of cell population growth during nutrient limitationc

cell population growth phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007794

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
population growth phenotypec
cell population phenotypec
has sub-classes
absence of cell population growthc, altered cell population growthc, cell division during cell population growth phenotypec, cell division ratio variability phenotypec, cell population growth during nutrient limitation phenotypec, cell population growth rate phenotypec, cell population growth yield phenotypec, presence of cell population growthc, vegetative cell population growth phenotypec

cell population growth rate phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007810

has super-classes
cell population growth phenotypec
has sub-classes
altered cell population growth ratec

cell population growth yield phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000345

has super-classes
cell population growth phenotypec
has sub-classes
altered cell population growth yieldc

cell population phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007698

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
population phenotypec
has sub-classes
altered cell population phenotypec, cell morphology variabilityc, cell population growth phenotypec, cell population viability phenotypec, presence of cell division ratio variabilityc, presence of nucleoid area variabilityc, septation index phenotypec

cell population viability phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007705

has super-classes
population viability phenotypec
cell population phenotypec
has sub-classes
<new term>c, altered cell population viabilityc, nonviable cell populationc, viable cell populationc

cell projectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0042995

has super-classes
cell partc

cell projection morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000083

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
is equivalent to
cell morphology phenotypec and (inheres_inop some cell projectionc)
has super-classes
cell morphology phenotypec
inheres_inop some cell projectionc
has sub-classes
flagellum morphology phenotypec, nanotube phenotypec, pilus morphology phenotypec

cell shape phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000073

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
cell morphology phenotypec and (has_qualityop some shapec)
has super-classes
cell morphology phenotypec
has_qualityop some shapec
has sub-classes
altered cell shapec, cell aspect ratio phenotypec, cell circularity phenotypec, coccobacillus cell shapec, cuboidal cell shapec, cylindrical cell shapec, lobed cell shapec, pleomorphic cell shapec, spheroid cell shapec, spiral cell shapec, stalked cell shapec, star-shaped cell shapec

cell shape variability phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000341

has super-classes
cell morphology variabilityc
has sub-classes
altered cell shape variability phenotypec

cell size phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000074

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
cell morphology phenotypec and (has_qualityop some sizec)
has super-classes
cell morphology phenotypec
has_qualityop some sizec
has sub-classes
altered cell sizec, cell area phenotypec, cell diameter phenotypec, cell length phenotypec, cell perimeter length phenotypec, cell surface area phenotypec, cell surface area-to-volume ratio phenotypec, cell volume phenotypec

cell size variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007917

has super-classes
cell morphology variabilityc
has sub-classes
absence of cell size variability within a cell populationc, altered cell size variability within a cell populationc, cell area variability phenotypec, cell aspect ratio variability phenotypec, cell circularity variability phenotypec, cell diameter variability phenotypec, cell length variability phenotypec, cell perimeter length variability phenotypec, cell surface area variability phenotypec, cell surface area-to-volume ratio variability phenotypec, cell volume variability phenotypec, presence of cell size variability within a cell populationc

cell staining phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000214

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbial phenotypec
has sub-classes
acid-fast staining phenotypec, altered cell staining phenotypec, diazonium blue B staining phenotypec, gram stain phenotypec

cell surface area phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000326

has super-classes
cell size phenotypec
has sub-classes
altered cell surface areac

cell surface area variability phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000362

has super-classes
cell size variabilityc

cell surface area-to-volume ratio phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000330

has super-classes
cell size phenotypec
has sub-classes
altered cell surface area-to-volume ratioc

cell surface area-to-volume ratio variability phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000364

has super-classes
cell size variabilityc

cell swimmingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0071975

has super-classes
cell motilityc

cell volume phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000328

has super-classes
cell size phenotypec
has sub-classes
altered cell volumec

cell volume variability phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000361

has super-classes
cell size variabilityc

cell wall morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005233

has super-classes
cell envelope morphology phenotypec
has sub-classes
absence of cell wallc, altered cell wall morphologyc, presence of cell wallc

cell wall morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007277

cell-cell self recognition phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000383

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
biological process phenotypec
has sub-classes
absence of cell-cell self recognitionc, altered cell-cell self recognitionc, presence of cell-cell self recognitionc

cellular aromatic compound metabolic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0006725

has super-classes
cellular metabolic processc
has sub-classes
aromatic compound biosynthetic processc, nucleobase-containing compound metabolic processc

cellular biosynthetic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044249

has super-classes
biosynthetic processc
cellular metabolic processc
has sub-classes
aromatic compound biosynthetic processc, cellular macromolecule biosynthetic processc, cellular nitrogen compound biosynthetic processc, heterocycle biosynthetic processc

cellular component movementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0006928

Note that in GO cellular components include whole cells (cell is_a cellular component).
has super-classes
single-organism cellular processc
has sub-classes
cell motilityc

cellular component phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007197

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
microbial phenotypec and (inheres_inop some cellular_componentc)
has super-classes
microbial phenotypec
inheres_inop some cellular_componentc
has sub-classes
altered cellular component phenotypec, cell morphology phenotypec, endomembrane system phenotypec, golgi apparatus phenotypec, motility phenotypec, protein localization phenotypec

cellular developmental processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0048869

has super-classes
single-organism cellular processc
single-organism developmental processc
has sub-classes
cell differentiationc

cellular macromolecule biosynthetic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0034645

has super-classes
macromolecule biosynthetic processc
cellular biosynthetic processc
cellular macromolecule metabolic processc
has sub-classes
DNA replicationc, transcription, DNA-templatedc, translationc

cellular macromolecule metabolic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044260

has super-classes
macromolecule metabolic processc
cellular metabolic processc
has sub-classes
DNA metabolic processc, RNA metabolic processc, cellular macromolecule biosynthetic processc, cellular protein metabolic processc

cellular metabolic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044237

has super-classes
metabolic processc
cellular processc
has sub-classes
cellular aromatic compound metabolic processc, cellular biosynthetic processc, cellular macromolecule metabolic processc, cellular nitrogen compound metabolic processc, heterocycle metabolic processc

cellular nitrogen compound biosynthetic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044271

has super-classes
cellular nitrogen compound metabolic processc
cellular biosynthetic processc
has sub-classes
nucleobase-containing compound biosynthetic processc

cellular nitrogen compound metabolic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0034641

has super-classes
nitrogen compound metabolic processc
cellular metabolic processc
has sub-classes
cellular nitrogen compound biosynthetic processc, nucleobase-containing compound metabolic processc

cellular physical quality phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007633

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
has super-classes
cell phenotypec
has sub-classes
altered cellular physical quality phenotypec, cell morphology phenotypec, cellular physical quality phenotype during vegetative growthc, level of substance in cell phenotypec, microbial cell viability phenotypec, subcellular component phenotypec

cellular physical quality phenotype during vegetative growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007748

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cellular physical quality phenotypec
has sub-classes
altered cellular physical quality phenotype during vegetative growthc, subcellular component phenotype during vegetative growthc

cellular pigment accumulation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007811

has super-classes
cellular process phenotypec
has sub-classes
absence of cellular pigment accumulationc, altered cellular pigment accumulationc, presence of cellular pigment accumulationc

cellular processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0009987

has super-classes
biological_processc
has sub-classes
cellular metabolic processc, single-organism cellular processc

cellular process phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007332

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
biological process phenotypec
has sub-classes
altered cellular processc, autophagy phenotypec, cell cycle phenotypec, cell death phenotypec, cell development phenotypec, cell fusion phenotypec, cell growth phenotypec, cellular pigment accumulation phenotypec, cellular process phenotype during vegetative growthc, meiotic nuclear division phenotypec, transport phenotypec

cellular process phenotype during vegetative growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007783

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cellular process phenotypec
has sub-classes
absence of cellular process during vegetative growthc, altered cellular process during vegetative growthc, presence of cellular process during vegetative growthc

cellular protein metabolic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044267

has super-classes
protein metabolic processc
cellular macromolecule metabolic processc
has sub-classes
translationc

cellular qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001396

has super-classes
physical object qualityc
has sub-classes
nucleate qualityc

cellular_componentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0005575

Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. Note that when this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this.
has sub-classes
cellc, cell partc

central location of endosporec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007225

has super-classes
endospore location phenotypec

chelator resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007908

has super-classes
chemical resistance phenotypec
has sub-classes
altered resistance to a chelatorc, not resistant to a chelatorc, resistant to a chelatorc

chemical entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_24431

chemical production phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000192

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
metabolic phenotypec
has sub-classes
carbon dioxide productionc

chemical resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007195

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
biological process phenotypec and (towardsop some chemical entityc) and (has_qualityop some sensitivity of a processc)
has super-classes
population growth phenotypec
has_qualityop some sensitivity of a processc
towardsop some chemical entityc
has sub-classes
alkaloid chemical resistance phenotypec, alkylating agent resistance phenotypec, altered resistance to chemicalc, antimicrobial agent resistance phenotypec, bile acids resistance phenotypec, chelator resistance phenotypec, metal resistance phenotypec, not resistant to a chemicalc, phenolic chemical resistance phenotypec, resistant to a chemicalc, surfactant resistance phenotypec

chemolithotrophicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007110

has super-classes
chemotrophic phenotypec
has sub-classes
disproportionation of thiosulfatec, ferrous iron (Fe2+) oxidationc, sulfide (H2S) oxidationc

chemoorganotrophicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007111

has super-classes
chemotrophic phenotypec

chemotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0006935

has super-classes
response to chemicalc
taxisc
has sub-classes
aerotaxisc

chemotaxis phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000048

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. ChEBI cross product candidate (and child terms).
has super-classes
taxis phenotypec
has sub-classes
absence of chemotaxisc, altered chemotaxisc, presence of chemotaxisc

chemotrophic phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007109

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
energy metabolism phenotypec
has sub-classes
chemolithotrophicc, chemoorganotrophicc

chloramphenicol resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006066

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
altered chloramphenicol resistancec, not resistant to chloramphenicolc, resistant to chloramphenicolc

chromosome segregationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0007059

has super-classes
single-organism cellular processc

chromosome segregation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005047

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
microbial phenotypec and (inheres_inop some chromosome segregationc)
has super-classes
genetic material phenotypec
biological process phenotypec
inheres_inop some chromosome segregationc
has sub-classes
absence of chromosome segregationc, altered chromosome segregationc, presence of chromosome segregationc

cilium or flagellum-dependent cell motilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0001539

Note that we deem eukaryotic cilia and microtubule-based flagella to be equivalent, while the bacterial- and archaeal-type flagella have a different structure. The former are microtubule-based structures that lash back and forth and are present only in eukaryotes, while the latter achieve motility by rotation. Bacterial- and archaeal-type flagella are superficially similar but have a different molecular composition and fine structure. These three structures never co-exist in the same organism. Therefore, GO:0001539 'cilium or flagellum-dependent cell motility' is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term. Direct annotations to GO:0001539 'cilium or flagellum-dependent cell motility' may be amended during annotation QC.
has super-classes
cell motilityc
has sub-classes
archaeal or bacterial-type flagellum-dependent cell motilityc

circularc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000411

has super-classes
ellipticc

circular colonyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000166

has super-classes
colony form phenotypec

clamp cell formation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007558

has super-classes
filamentous growth of a multicellular organism phenotypec

clamp cell morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007553

has super-classes
hyphal morphology phenotypec

clamp connection morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007559

has super-classes
hyphal morphology phenotypec

clear plaque appearancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008061

has super-classes
plaque appearance phenotypec

clearer plaque appearancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008053

has super-classes
altered plaque appearancec

coccobacillus cell shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000123

has super-classes
cell shape phenotypec

coccusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000075

has super-classes
spheroid cell shapec

colonization of a host phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007252

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbe-host interaction phenotypec
has sub-classes
absence of colonization of a hostc, adhesion to host phenotypec, altered colonization of a hostc, colonization of host tissue phenotypec, colonization of invertebrate host phenotypec, presence of colonization of a hostc

colonization of host tissue phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005281

has super-classes
colonization of a host phenotypec
has sub-classes
absence of colonization of host tissuec, altered colonization of host tissuec, colonization of mouse tissuec, colonization of rabbit tissue phenotypec, colonization of tissue in an immunocompromised host phenotypec, presence of colonization of host tissuec

colonization of invertebrate host phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007462

has super-classes
colonization of a host phenotypec

colonization of mouse tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005295

has super-classes
colonization of host tissue phenotypec
has sub-classes
absence of colonization of mouse tissuec, altered colonization of mouse tissuec, presence of colonization of mouse tissuec

colonization of rabbit tissue phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005309

has super-classes
colonization of host tissue phenotypec
has sub-classes
absence of colonization of rabbit tissuec, altered colonization of rabbit tissuec, presence of colonization of rabbit tissuec

colonization of tissue in an immunocompromised host phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005288

has super-classes
colonization of host tissue phenotypec
has sub-classes
absence of colonization of tissue in an immunocompromised hostc, altered colonization of tissue in an immunocompromised hostc, colonization of tissue in an immunocompromised mouse phenotypec, colonization of tissue in an immunocompromised rabbit phenotypec, presence of colonization of tissue in an immunocompromised hostc

colonization of tissue in an immunocompromised mouse phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005302

has super-classes
colonization of tissue in an immunocompromised host phenotypec
has sub-classes
absence of colonization of tissue in an immunocompromised mousec, altered colonization of tissue in an immunocompromised mousec, presence of colonization of tissue in an immunocompromised mousec

colonization of tissue in an immunocompromised rabbit phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005316

has super-classes
colonization of tissue in an immunocompromised host phenotypec
has sub-classes
absence of colonization of tissue in an immunocompromised rabbitc, altered colonization of tissue in an immunocompromised rabbitc, presence of colonization of tissue in an immunocompromised rabbitc

colony consistency phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000229

has super-classes
colony morphology phenotypec
has sub-classes
butyrous colony consistencyc, dry colony consistencyc, viscous colony consistencyc

colony elevation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000104

has super-classes
colony morphology phenotypec
has sub-classes
convex colony elevationc, crateriform colony elevationc, flat colony elevationc, growth into mediumc, pulvinate colony elevationc, raised colony elevationc, umbonate colony elevationc

colony form phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000103

has super-classes
colony morphology phenotypec
has sub-classes
circular colonyc, filamentous colonyc, irregular colonyc, papillated colonyc, punctiform colonyc, rhizoid colonyc, sectored colonyc, spindle colonyc

colony margin phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000149

has super-classes
colony morphology phenotypec
has sub-classes
curled marginc, entire marginc, erose marginc, filiform marginc, lobate marginc, undulate marginc

colony morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000100

has super-classes
population morphology phenotypec
has sub-classes
altered colony morphologyc, colony consistency phenotypec, colony elevation phenotypec, colony form phenotypec, colony margin phenotypec, colony odor phenotypec, colony optical phenotypec, colony size phenotypec, colony surface phenotypec

colony odor phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000237

has super-classes
colony morphology phenotypec

colony opacity phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000102

has super-classes
colony optical phenotypec
has sub-classes
opaque colonyc, translucent colonyc, transparent colonyc

colony optical phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000108

has super-classes
colony morphology phenotypec
has sub-classes
colony opacity phenotypec, colony pigmentation phenotypec

colony pigmentation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000107

has super-classes
colony optical phenotypec
has sub-classes
altered colony pigmentationc, fluorescent colonyc, iridescent colonyc, non-pigmented colonyc, pigmented colonyc

colony sheen phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000106

has super-classes
colony surface phenotypec
has sub-classes
dull colony sheenc

colony size phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000179

has super-classes
colony morphology phenotypec
has sub-classes
altered colony size phenotypec

colony surface phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000210

has super-classes
colony morphology phenotypec
has sub-classes
colony sheen phenotypec, concentrically ringed surface colonyc, mucoid colony surface phenotypec, plicate colony surfacec, rough colony surfacec, rugose colony surfacec, smooth colony surfacec

colony with diffusible pigmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000181

has super-classes
pigmented colonyc

colony with non-diffusible pigmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000200

has super-classes
pigmented colonyc

commonly used descriptorsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007928

has super-classes
microbial phenotypec
has sub-classes
aerotolerant anaerobec, facultative anaerobec, microaerophilec, obligate aerobec, obligate anaerobec

complete structurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0005012

has super-classes
structurec

concavec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001857

has super-classes
concavityc

concave 3-D shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002008

has super-classes
3-D shapec
has_partop some concavec
has sub-classes
C-shapedc, J-shapedc, obclavatec, snowman-shapedc

concavityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002005

has super-classes
shapec
has sub-classes
concavec, convexc

concentratedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001159

has super-classes
concentration ofc
has sub-classes
decreased concentrationc, increased concentrationc

concentration ofc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000033

has super-classes
molecular qualityc
has sub-classes
concentratedc

concentrically ringed surface colonyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000242

has super-classes
colony surface phenotypec

conidiation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007560

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
has super-classes
asexual sporulation phenotypec

conjugation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007413

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. An example of conjugation would be the transfer of a conjugative plasmid from a donor bacterium to a recipient bacterium.
has super-classes
multi-organism process phenotypec
has sub-classes
absence of conjugationc, altered conjugationc, presence of conjugationc

conjugation without glucose starvationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007710

has super-classes
altered conjugationc

conjugation without nitrogen starvationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007711

has super-classes
altered conjugationc

constitutive transcriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000254

has super-classes
increased transcription of gene or operonc

constrictedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001847

has super-classes
structurec

continuousc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000689

has super-classes
occurrencec

convexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001355

has super-classes
concavityc

convex 3-D shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002007

Use this term or an is_a child of this term when the entire shape of the object is known.
has super-classes
3-D shapec
has_cross_sectionop some 2-D shapec
has sub-classes
lemon-shapedc, spheroidc, teardrop-shapedc

convex colony elevationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000162

has super-classes
colony elevation phenotypec

correlation between nucleoid and cell constriction phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000348

has super-classes
nucleoid constriction during cell division phenotypec

crateriform colony elevationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000238

has super-classes
colony elevation phenotypec

cuboidal cell shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000129

has super-classes
cell shape phenotypec

curled marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000158

has super-classes
colony margin phenotypec

curvaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001591

has super-classes
shapec
has sub-classes
curvedc

curvedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000406

has super-classes
curvaturec

curved germ tube morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007844

has super-classes
altered germ tube morphologyc

curving vegetative cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007714

has super-classes
altered vegetative cell shapec

cut cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007782

has super-classes
septation following abnormal chromosome segregation during vegetative growthc

cylindrical akinetec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006165

has super-classes
akinete morphology phenotypec

cylindrical cell shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007099

has super-classes
cell shape phenotypec
has sub-classes
more rod-like cell shapec, rod-shaped cellsc

cytokinesis phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007148

has super-classes
cell cycle phenotypec
has sub-classes
altered cytokinesisc, septation phenotypec

cytoskeleton morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005180

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cytoskeleton phenotypec
has sub-classes
altered cytoskeleton morphology phenotypec

cytoskeleton phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007754

has super-classes
subcellular component phenotypec
has sub-classes
actin cytoskeleton phenotypec, cytoskeleton morphology phenotypec, microtubule cytoskeleton phenotypec

decarboxylase negativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006078

has super-classes
decarboxylase test phenotypec
has sub-classes
abolished decarboxylase activityc

decarboxylase positivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006080

has super-classes
decarboxylase test phenotypec

decarboxylase test phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000219

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
differential test phenotypec
has sub-classes
altered decarboxylase test resultc, decarboxylase negativec, decarboxylase positivec

decreased absorption of bacteriocinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007272

has super-classes
increased resistance to bacteriocinc

decreased acid phosphatase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005177

has super-classes
altered acid phosphatase activityc
has sub-classes
abolished acid phosphatase activityc

decreased acid tolerance responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000380

has super-classes
altered acid tolerance responsec
has sub-classes
abolished acid tolerance responsec

decreased adhesionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005217

has super-classes
altered adhesionc
has sub-classes
abolished adhesionc

decreased adhesion to hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005210

has super-classes
altered adhesion to hostc
has sub-classes
abolished adhesion to hostc

decreased aerobic respirationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007179

has super-classes
altered aerobic respirationc
has sub-classes
abolished aerobic respirationc

decreased aerotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000500

is equivalent to
altered aerotaxisc and (has_qualityop some decreased process qualityc)
has super-classes
altered aerotaxisc
has_qualityop some decreased process qualityc
has sub-classes
abolished aerotaxisc

decreased agar invasion phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005330

has super-classes
altered agar invasionc
has sub-classes
abolished agar invasionc

decreased akinete formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007421

has super-classes
altered akinete formationc
has sub-classes
abolished akinete formationc

decreased alpha-1,3-mannosyltransferase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005203

has super-classes
altered alpha-1,3-mannosyltransferase activityc

decreased amino acid requirementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007021

has super-classes
decreased growth factor requirementc
altered amino acid requirementc
has sub-classes
abolished amino acid requirementc

decreased amount of capsulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000050

has super-classes
altered capsule phenotypec
has sub-classes
abolished capsule formationc

decreased anaerobic population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007927

Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments.
has super-classes
altered anaerobic population growthc
has sub-classes
abolished anaerobic population growthc, decreased anaerobic population growth ratec, decreased anaerobic population growth yieldc

decreased anaerobic population growth ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005197

has super-classes
decreased anaerobic population growthc

decreased anaerobic population growth yieldc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005194

has super-classes
decreased anaerobic population growthc

decreased anaerobic respirationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007185

has super-classes
altered anaerobic respirationc
has sub-classes
abolished anaerobic respirationc

decreased antimicrobial peptide productionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006118

has super-classes
altered antimicrobial peptide productionc
has sub-classes
abolished antimicrobial peptide productionc

decreased apoptosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007313

has super-classes
altered apoptosisc
has sub-classes
abolished apoptosisc

decreased ascospore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007472

has super-classes
altered ascospore formationc
decreased sexual sporulationc
has sub-classes
abolished ascospore formationc

decreased asexual spore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007430

has super-classes
altered asexual sporulationc
has sub-classes
abolished asexual spore formationc

decreased autophagic vesicle formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007337

has super-classes
altered autophagic vesicle formationc
has sub-classes
abolished autophagic vesicle formationc

decreased bacteriophage absorptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007240

has super-classes
decreased sensitivity to bacteriophagec

decreased basal expression of the SOS responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005021

has super-classes
altered basal expression of the SOS responsec
has sub-classes
abolished uninduced expression of the SOS responsec

decreased binary fissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006170

has super-classes
altered binary fissionc
has sub-classes
abolished binary fissionc

decreased biofilm formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007026

has super-classes
altered biofilm formationc
has sub-classes
abolished biofilm formationc

decreased buddingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006006

has super-classes
altered buddingc
has sub-classes
abolished buddingc, decreased budding frequencyc

decreased budding frequencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007423

has super-classes
decreased buddingc

decreased caffeine resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000460

has super-classes
altered caffeine resistancec
has sub-classes
abolished caffeine resistancec

decreased capsule sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007505

has super-classes
altered capsule sizec

decreased catalase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000195

has super-classes
altered catalase test resultc
has sub-classes
abolished catalase activityc

decreased catalytic activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005103

has super-classes
altered enzymatic activityc
has sub-classes
abolished enzymatic activityc

decreased cell areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007985

has super-classes
altered cell areac

decreased cell area variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007987

has super-classes
altered cell area variabilityc

decreased cell aspect ratioc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000223

has super-classes
altered cell aspect ratioc

decreased cell aspect ratio variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000233

has super-classes
altered cell aspect ratio variabilityc

decreased cell circularityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000051

has super-classes
altered cell circularityc

decreased cell circularity variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000170

has super-classes
altered cell circularity variabilityc

decreased cell diameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005109

has super-classes
decreased cell sizec
has sub-classes
decreased vegetative cell diameterc

decreased cell diameter variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007981

has super-classes
altered cell diameter variabilityc

decreased cell division ratio variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000257

has super-classes
altered cell division ratio variabilityc

decreased cell fusionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005223

has super-classes
altered cell fusionc
has sub-classes
abolished cell fusionc

decreased cell fusion during matingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005231

has super-classes
altered cell fusion during matingc
has sub-classes
abolished cell fusion during matingc

decreased cell growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007688

Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
has super-classes
altered cell growthc
has sub-classes
abolished cell growthc

decreased cell lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007084

has super-classes
decreased cell sizec
altered cell lengthc
has sub-classes
decreased vegetative cell lengthc

decreased cell length variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007980

has super-classes
altered cell length variabilityc

decreased cell lysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005340

has super-classes
altered cell lysisc
has sub-classes
abolished cell lysisc

decreased cell perimeterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000275

has super-classes
altered cell perimeter lengthc

decreased cell perimeter length variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000278

has super-classes
altered cell perimeter length variabilityc

decreased cell population growth during nutrient limitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007967

has super-classes
altered cell population growth during nutrient limitationc
has sub-classes
abolished population growth during nutrient limitationc

decreased cell population growth ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000270

has super-classes
altered cell population growth ratec

decreased cell population growth yieldc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000285

has super-classes
altered cell population growth yieldc

decreased cell population viabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007702

has super-classes
altered cell population viabilityc
has sub-classes
abolished cell population viabilityc, decreased cell population viablity upon starvationc, decreased vegetative cell population viabilityc

decreased cell population viability upon nitrogen starvationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007808

has super-classes
decreased cell population viablity upon starvationc

decreased cell population viablity upon starvationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007807

has super-classes
decreased cell population viabilityc
has sub-classes
decreased cell population viability upon nitrogen starvationc

decreased cell sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000040

has super-classes
altered cell sizec
has sub-classes
decreased cell diameterc, decreased cell lengthc, decreased cell volumec

decreased cell size variability within a cell populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007923

has super-classes
altered cell size variability within a cell populationc
has sub-classes
abolished cell size variability within a cell populationc

decreased cell surface areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007994

has super-classes
altered cell surface areac

decreased cell surface area variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007997

has super-classes
altered cell surface area variabilityc

decreased cell surface area-to-volume ratioc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000009

has super-classes
altered cell surface area-to-volume ratioc

decreased cell surface area-to-volume ratio variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000032

has super-classes
altered cell surface area-to-volume ratio variabilityc

decreased cell viabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007261

has super-classes
altered microbial cell viabilityc
has sub-classes
abolished cell viabilityc, decreased viability of vegetative microbial cellc

decreased cell volumec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007719

has super-classes
decreased cell sizec
has sub-classes
decreased vegetative cell volumec

decreased cell volume variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007991

has super-classes
altered cell volume variabilityc

decreased cell wall chitin levelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007628

has super-classes
altered cell wall chitin levelc
has sub-classes
abolished chitin in cell wallc

decreased cell wall protein levelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007639

has super-classes
altered cell wall protein levelc
has sub-classes
abolished cell wall protein levelc

decreased cell-cell self recognitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000388

has super-classes
altered cell-cell self recognitionc
has sub-classes
abolished cell-cell self recognitionc

decreased cellular pigment accumulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007817

has super-classes
altered cellular pigment accumulationc
has sub-classes
decreased cellular pigment accumulation during vegetative growthc

decreased cellular pigment accumulation during vegetative growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007818

has super-classes
decreased cellular pigment accumulationc

decreased chemotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000503

has super-classes
altered chemotaxisc
has sub-classes
abolished chemotaxisc, decreased negative chemotaxisc, decreased positive chemotaxisc, increased threshold for positive chemotaxisc

decreased colonization of a hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007257

has super-classes
altered colonization of a hostc
has sub-classes
abolished colonization of a hostc

decreased colonization of host tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005286

has super-classes
altered colonization of host tissuec
has sub-classes
abolished colonization of host tissuec

decreased colonization of mouse tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005300

has super-classes
altered colonization of mouse tissuec
has sub-classes
abolished colonization of mouse tissuec

decreased colonization of rabbit tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005314

has super-classes
altered colonization of rabbit tissuec
has sub-classes
abolished colonization of rabbit tissuec

decreased colonization of tissue in an immunocompromised hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005293

has super-classes
altered colonization of tissue in an immunocompromised hostc
has sub-classes
abolished colonization of tissue in an immunocompromised hostc

decreased colonization of tissue in an immunocompromised mousec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005307

has super-classes
altered colonization of tissue in an immunocompromised mousec
has sub-classes
abolished colonization of tissue in an immunocompromised mousec

decreased colonization of tissue in an immunocompromised rabbitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005321

has super-classes
altered colonization of tissue in an immunocompromised rabbitc
has sub-classes
abolished colonization of tissue in an immunocompromised rabbitc

decreased colony sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000241

has super-classes
altered colony size phenotypec

decreased concentrationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001163

is equivalent to
concentratedc and (decreased_in_magnitude_relative_toop some normalc)
has super-classes
concentratedc
decreased object qualityc
decreased_in_magnitude_relative_toop some normalc

decreased conjugationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007417

has super-classes
altered conjugationc
has sub-classes
abolished conjugationc

decreased correlation between nucleoid and cell constriction during cell divisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000305

has super-classes
altered correlation between nucleoid and cell constriction during cell divisionc

decreased cytoskeleton phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005186

decreased decarboxylase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006082

has super-classes
altered decarboxylase test resultc
has sub-classes
abolished decarboxylase activityc

decreased degree of nucleoid constriction at the onset of cell constrictionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000315

has super-classes
altered degree of nucleoid constriction at the onset of cell constrictionc

decreased diazonium blue B stainingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007301

has super-classes
altered diazonium blue B stainingc
has sub-classes
abolished diazonium blue B stainingc

decreased drug-dependence of population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007269

has super-classes
altered drug-dependence of population growthc
has sub-classes
abolished drug-dependence of population growthc

decreased durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000499

is equivalent to
durationc and (decreased_in_magnitude_relative_toop some normalc)
has super-classes
durationc
decreased process qualityc
decreased_in_magnitude_relative_toop some normalc

decreased endocytosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005264

has super-classes
altered endocytosisc
has sub-classes
abolished endocytosisc

decreased endospore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000013

is equivalent to
altered endospore formationc and (has_qualityop some decreased process qualityc)
has super-classes
altered endospore formationc
has_qualityop some decreased process qualityc
has sub-classes
abolished endospore formationc

decreased ferric reductase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005151

is equivalent to
altered ferric reductase activityc and (has_qualityop some decreased process qualityc)
has super-classes
altered ferric reductase activityc
has_qualityop some decreased process qualityc
has sub-classes
abolished ferric reductase activityc

decreased filamentous growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005246

has super-classes
altered filamentous growthc
has sub-classes
abolished filamentous growthc

decreased flagellum lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007132

has super-classes
altered flagellum lengthc

decreased flocculationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007467

has super-classes
altered flocculationc
has sub-classes
abolished flocculationc

decreased fraction of cells with one nucleoidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000297

has super-classes
altered fraction of cells with one nucleoidc

decreased fraction of cells with two nucleoidsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000301

has super-classes
altered fraction of cells with two nucleoidsc

decreased fraction of non-constricted cellsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000288

has super-classes
altered fraction of non-constricted cellsc

decreased frequency of cell separation after cell division during vegetative growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007790

has super-classes
altered cell separation after cell division during vegetative growthc
has sub-classes
abolished cell separation after cell division during vegetative growthc

decreased frequency of chromosome missegregationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005060

has super-classes
altered chromosome segregationc
has sub-classes
abolished chromosome segregationc

decreased frequency of DNA breaksc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007607

has super-classes
altered frequency of DNA breaksc
has sub-classes
abolished DNA breaksc, decreased frequency of double-strand DNA breaksc, decreased frequency of single-strand DNA breaksc

decreased frequency of double-strand DNA breaksc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007616

has super-classes
decreased frequency of DNA breaksc

decreased frequency of gene silencingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005065

has super-classes
altered gene silencingc
has sub-classes
abolished gene silencingc

decreased frequency of Holliday junction structuresc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007622

has super-classes
altered frequency of Holliday junction structuresc
has sub-classes
abolished Holliday junction structuresc

decreased frequency of homologous recombinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005050

has super-classes
altered homologous recombinationc
has sub-classes
abolished homologous recombinationc

decreased frequency of persister cellsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007155

has super-classes
altered persister cell phenotypec

decreased frequency of single-strand DNA breaksc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007615

has super-classes
decreased frequency of DNA breaksc

decreased frequency of site-specific recombinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005056

has super-classes
altered site-specific recombinationc
has sub-classes
abolished site-specific recombinationc

decreased gene expressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000268

has super-classes
altered gene expressionc
has sub-classes
abolished gene expressionc

decreased growth factor requirementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007075

has super-classes
altered growth factor requirementc
has sub-classes
decreased amino acid requirementc, decreased purine requirementc, decreased pyrimidine requirementc, decreased vitamin/enzyme cofactor requirementc

decreased haploid fruitingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007547

has super-classes
altered haploid fruitingc
has sub-classes
abolished haploid fruitingc, decreased rate of haploid fruitingc

decreased heme utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000453

has super-classes
altered heme utilization phenotypec
has sub-classes
abolished heme utilizationc

decreased hemolysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000249

has super-classes
altered hemolysis test resultc
has sub-classes
abolished hemolysisc

decreased heterocyst formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000015

has super-classes
altered heterocyst formationc
has sub-classes
abolished heterocyst formationc

decreased induced expression of the SOS responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005025

has super-classes
altered induced expression of the SOS responsec
has sub-classes
abolished induced expression of the SOS responsec

decreased inorganic carbon source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007853

has super-classes
altered carbon source utilizationc
has sub-classes
abolished inorganic carbon source utilizationc

decreased internalization by macrophagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000374

has super-classes
altered internalization by macrophagec
has sub-classes
abolished internalization by macrophagec

decreased laccase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007290

is equivalent to
altered laccase activityc and (has_qualityop some decreased process qualityc)
has super-classes
altered laccase activityc
has_qualityop some decreased process qualityc
has sub-classes
abolished laccase activityc

decreased lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000574

is equivalent to
lengthc and (decreased_in_magnitude_relative_toop some normalc)
has super-classes
lengthc
decreased sizec
decreased_in_magnitude_relative_toop some normalc

decreased lethalityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007398

has super-classes
altered lethalityc
has sub-classes
abolished lethalityc, decreased lethality in immunocompromised micec, decreased lethality in micec

decreased lethality in an amoeba hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007530

has super-classes
altered lethality in an amoeba hostc
has sub-classes
abolished lethality in an amoeba hostc

decreased lethality in immunocompromised micec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007447

has super-classes
decreased lethalityc
has sub-classes
abolished lethality in immunocompromised micec

decreased lethality in micec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007446

has super-classes
decreased lethalityc
has sub-classes
abolished lethality in micec

decreased level of cellular reactive oxygen speciesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007662

has super-classes
altered level of cellular reactive oxygen speciesc
has sub-classes
abolished cellular reactive oxygen speciesc

decreased lifespanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005107

has super-classes
altered lifespan phenotypec

decreased matingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005354

has super-classes
altered matingc
has sub-classes
abolished matingc

decreased mating efficiencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005359

has super-classes
altered mating efficiencyc
has sub-classes
abolished mating efficiencyc

decreased microaerophilic population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007929

Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments.
has super-classes
altered microaerophilic population growthc
has sub-classes
decreased microaerophilic population growth ratec

decreased microaerophilic population growth ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005259

has super-classes
decreased microaerophilic population growthc

decreased mitotic recombinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005071

has super-classes
altered mitotic recombinationc
has sub-classes
abolished mitotic recombinationc

decreased motilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000002

is equivalent to
altered motilityc and (has_qualityop some decreased process qualityc)
has super-classes
altered motilityc
has_qualityop some decreased process qualityc
has sub-classes
abolished motilityc, decreased motility by glidingc, decreased motility by swarmingc, decreased motility by swimmingc, decreased motility by twitchingc

decreased motility by glidingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007091

has super-classes
decreased motilityc
altered motility by glidingc
has sub-classes
abolished motility by glidingc

decreased motility by swarmingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007092

has super-classes
decreased motilityc
altered cell motility by swarmingc
has sub-classes
abolished motility by swarmingc

decreased motility by swimmingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007093

has super-classes
decreased motilityc
altered cell motility by swimmingc
has sub-classes
abolished motility by swimmingc

decreased motility by twitchingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007094

has super-classes
decreased motilityc
altered cell motility by twitchingc
has sub-classes
abolished motility by twitchingc

decreased mucoidyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007323

has super-classes
altered mucoid colony phenotypec
has sub-classes
abolished mucoidyc

decreased multiple fissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006175

has super-classes
altered multiple fissionc
has sub-classes
abolished multiple fissionc

decreased mutation frequencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005069

has super-classes
altered mutation frequencyc

decreased myxospore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000022

is equivalent to
altered myxospore formationc and (has_qualityop some decreased process qualityc)
has super-classes
altered myxospore formationc
has_qualityop some decreased process qualityc
has sub-classes
abolished myxospore formationc

decreased natural competencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008039

has super-classes
altered natural competencec
has sub-classes
abolished natural competencec

decreased negative chemotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007005

has super-classes
decreased chemotaxisc

decreased negative osmotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007514

has super-classes
decreased osmotaxisc
has sub-classes
abolished negative osmotaxisc

decreased negative supercoilingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0001002

has super-classes
altered DNA supercoilingc
has sub-classes
abolished negative DNA supercoilingc

decreased nucleoid areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000261

has super-classes
altered nucleoid areac

decreased nucleoid area variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000264

has super-classes
altered nucleoid area variabilityc

decreased number of flagellac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000215

has super-classes
altered number of flagellac
has sub-classes
abolished flagellac

decreased number of pilic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000028

has super-classes
altered pilus phenotypec
has sub-classes
abolished number of pilic

decreased nutrient importc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007016

has super-classes
altered nutrient import phenotypec
has sub-classes
abolished nutrient importc

decreased object qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002303

is equivalent to
physical object qualityc and (decreased_in_magnitude_relative_toop some normalc)
has super-classes
physical object qualityc
decreased qualityc
decreased_in_magnitude_relative_toop some normalc
has sub-classes
decreased concentrationc, decreased permeabilityc, decreased sizec, decreased temperaturec, has fewer parts of typec

decreased occurrencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002052

is equivalent to
occurrencec and (decreased_in_magnitude_relative_toop some normalc)
has super-classes
occurrencec
decreased process qualityc
decreased_in_magnitude_relative_toop some normalc
has sub-classes
arrestedc

decreased organic carbon source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007070

has super-classes
altered carbon source utilizationc
has sub-classes
abolished organic carbon source utilizationc

decreased organic nitrogen source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007035

has super-classes
altered organic nitrogen source utilizationc
has sub-classes
abolished utilization of organic nitrogenc

decreased osmotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005372

has super-classes
altered osmotaxisc
has sub-classes
abolished osmotaxisc, decreased negative osmotaxisc, decreased positive osmotaxisc

decreased outer membrane vesicle productionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006159

has super-classes
altered outer membrane vesicle productionc
has sub-classes
abolished outer membrane vesiclec

decreased oxidase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006087

has super-classes
altered oxidase test resultc
has sub-classes
abolished oxidase activityc

decreased permeabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001578

is equivalent to
permeablec and (decreased_in_magnitude_relative_toop some normalc)
has super-classes
permeablec
decreased object qualityc
decreased_in_magnitude_relative_toop some normalc

decreased phosphatase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005163

is equivalent to
altered phosphatase activityc and (has_qualityop some decreased process qualityc)
has super-classes
altered phosphatase activityc
has_qualityop some decreased process qualityc

decreased phospholipase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005063

is equivalent to
altered phospholipase activityc and (has_qualityop some decreased process qualityc)
has super-classes
altered phospholipase activityc
has_qualityop some decreased process qualityc
has sub-classes
abolished phospholipase activityc

decreased plaque size phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008055

has super-classes
altered plaque size phenotypec

decreased population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007598

has super-classes
altered population growthc
has sub-classes
abolished population growthc

decreased population growth at acidic pHc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007008

has super-classes
altered effects of pH on population growthc
has sub-classes
abolished population growth at acidic pHc

decreased population growth at alkaline pHc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007010

has super-classes
altered effects of pH on population growthc
has sub-classes
abolished population growth at alkaline pHc

decreased population growth at high temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007954

has super-classes
absence of population growth at high temperaturec
altered population growth at high temperaturec
has sub-classes
abolished population growth at high temperaturec

decreased population growth at low temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007960

has super-classes
altered population growth at low temperaturec
has sub-classes
abolished population growth at low temperaturec

decreased population growth in high osmolarityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007521

has super-classes
altered population growth in high osmolarityc
has sub-classes
abolished population growth in high osmolarityc

decreased population growth on defined mediumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007776

has super-classes
altered population growth on defined mediumc
has sub-classes
abolished population growth on defined mediumc

decreased population growth ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000282

has super-classes
altered population growth ratec

decreased population growth yieldc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007644

has super-classes
altered population growth yieldc

decreased positive chemotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007041

has super-classes
decreased chemotaxisc

decreased positive osmotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007515

has super-classes
decreased osmotaxisc
has sub-classes
abolished positive osmotaxisc

decreased positive supercoilingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007002

has super-classes
altered DNA supercoilingc
has sub-classes
abolished positive DNA supercoilingc

decreased process qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002302

is equivalent to
process qualityc and (decreased_in_magnitude_relative_toop some normalc)
has super-classes
process qualityc
decreased qualityc
decreased_in_magnitude_relative_toop some normalc
has sub-classes
decreased durationc, decreased occurrencec, decreased ratec, decreased sensitivity of a processc

decreased protein kinase A activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005157

is equivalent to
altered protein kinase A activityc and (has_qualityop some decreased process qualityc)
has super-classes
altered protein kinase A activityc
has_qualityop some decreased process qualityc
has sub-classes
abolished protein kinase A activityc

decreased protein secretionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007349

has super-classes
altered protein secretionc
has sub-classes
abolished protein secretionc

decreased purine requirementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007022

has super-classes
decreased growth factor requirementc
altered purine requirementc
has sub-classes
abolished purine requirementc

decreased pyrimidine requirementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007389

has super-classes
decreased growth factor requirementc
altered pyrimidine requirementc
has sub-classes
abolished pyrimidine requirementc

decreased qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002301

is equivalent to
qualityc and (decreased_in_magnitude_relative_toop some normalc)
has super-classes
deviation(from_normal)c
decreased_in_magnitude_relative_toop some normalc
has sub-classes
decreased object qualityc, decreased process qualityc

decreased quorum sensingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007028

has super-classes
altered quorum sensing phenotypec
has sub-classes
abolished quorum sensingc

decreased ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000911

is equivalent to
ratec and (decreased_in_magnitude_relative_toop some normalc)
has super-classes
ratec
decreased process qualityc
decreased_in_magnitude_relative_toop some normalc

decreased rate of haploid fruitingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007552

has super-classes
decreased haploid fruitingc

decreased rate of transposable element transpositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005075

has super-classes
altered transposable element transposition phenotypec
has sub-classes
abolished transpositionc

decreased relative timing of cell constrictionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000356

has super-classes
altered timing of cell constrictionc

decreased resistance benzamidesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007385

has super-classes
altered resistance to benzamidesc
has sub-classes
abolished resistance to benzamidesc

decreased resistance to a chelatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007912

has super-classes
altered resistance to a chelatorc
has sub-classes
abolished resistance to a chelatorc

decreased resistance to a chemicalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007249

has super-classes
altered resistance to chemicalc
has sub-classes
abolished chemical resistancec

decreased resistance to a metalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007886

has super-classes
altered resistance to a metalc
has sub-classes
abolished resistance to a metalc

decreased resistance to a nucleosidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007363

has super-classes
altered resistance to a nucleosidec
has sub-classes
abolished resistance to a nucleosidec

decreased resistance to a surfactantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007896

has super-classes
altered resistance to a surfactantc
has sub-classes
abolished resistance to a surfactantc

decreased resistance to a urea derivativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007538

The original term was deemed to be too granular and were replaced with OMP:0007249 decreased resistance to chemical. When using this term for annotation, enter a database identifier for the specific chemical in the Annotation Extension field.

decreased resistance to A22c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007873

This term and was deemed to be too granular. In its place, use OMP:000 7879 decreased resistance to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field.

decreased resistance to acidic pH stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005077

has super-classes
altered resistance to acidic pH stress phenotypec
has sub-classes
abolished resistance to acidic pH stressc

decreased resistance to alkaline pH stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005079

has super-classes
altered resistance to alkaline pH stress phenotypec
has sub-classes
abolished resistance to alkaline pH stressc

decreased resistance to alkylating agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007377

has super-classes
altered resistance to an alkylating agentc
has sub-classes
abolished resistance to alkylating agentc

decreased resistance to aminoglycosidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006057

has super-classes
altered aminoglycoside resistancec
has sub-classes
abolished resistance to aminoglycosidec

decreased resistance to aminopyrimidinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000335

has super-classes
altered aminopyrimidine resistancec
has sub-classes
abolished resistance to aminopyrimidinec

decreased resistance to an acridinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007370

has super-classes
altered resistance to an acridinec
has sub-classes
abolished resistance to an acridinec

decreased resistance to an antimicrobial agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007879

has super-classes
altered resistance to an antimicrobial agentc
has sub-classes
abolished resistance to an antimicrobial agentc

decreased resistance to an epoxidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007500

has super-classes
altered epoxide resistancec
has sub-classes
abolished resistance to an epoxidec

decreased resistance to azolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006052

has super-classes
altered azole resistancec
has sub-classes
abolished resistance to azolec

decreased resistance to bacteriocinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006048

has super-classes
altered bacteriocin resistancec
has sub-classes
abolished resistance to bacteriocinc

decreased resistance to beta-lactamc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006044

has super-classes
altered beta-lactam resistancec
has sub-classes
abolished resistance to beta-lactamc

decreased resistance to bicyclomycinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007866

decreased resistance to bile acidsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007903

has super-classes
altered resistance to bile acidsc
has sub-classes
abolished resistance to bile acidsc

decreased resistance to chloramphenicolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006067

has super-classes
altered chloramphenicol resistancec
has sub-classes
abolished resistance to chloramphenicolc

decreased resistance to cold shockc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007588

has super-classes
altered resistance to cold shockc
has sub-classes
abolished resistance to cold shockc

decreased resistance to dessication stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005088

has super-classes
altered resistance to dessication stress phenotypec
has sub-classes
abolished resistance to dessication stressc

decreased resistance to fosfomycinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007860

has super-classes
altered fosfomycin resistancec
has sub-classes
abolished fosfomycin resistancec

decreased resistance to freeze/thawing stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005090

has super-classes
altered resistance to freeze/thaw stressc
has sub-classes
abolished resistance to freeze/thawing stressc

decreased resistance to gamma-ray radiationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005094

has super-classes
altered resistance to gamma-ray radiationc
has sub-classes
abolished resistance to gamma ray radiationc

decreased resistance to heat shockc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007591

has super-classes
altered resistance to heatc
has sub-classes
abolished resistance to heat shockc

decreased resistance to host defense peptidesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007173

has super-classes
altered resistance to host defense peptidesc
has sub-classes
abolished resistance to host defense peptidesc

decreased resistance to killing by hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005143

has super-classes
altered resistance to killing by hostc
has sub-classes
abolished resistance to killing by hostc

decreased resistance to lantibioticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006012

has super-classes
altered lantibiotic resistance phenotypec
has sub-classes
abolished resistance to lantibioticc

decreased resistance to macrolidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006036

has super-classes
altered resistance to macrolidec
has sub-classes
abolished resistance to macrolidec

decreased resistance to mitomycinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007654

has super-classes
altered mitomycin resistancec
has sub-classes
abolished resistance to mitomycinc

decreased resistance to nitrofuranc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007825

has super-classes
altered nitrofuran resistancec
has sub-classes
abolished resistance to nitrofuranc

decreased resistance to nutrient limitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007937

has super-classes
altered resistance to nutrient limitationc
has sub-classes
abolished resistance to nutrient limitationc

decreased resistance to organic aromatic compoundsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005345

has super-classes
altered organic aromatic compound resistancec
has sub-classes
abolished resistance to organic aromatic compoundsc

decreased resistance to organic heterocyclic compoundc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005276

has super-classes
altered organic heterocyclic compound resistancec
has sub-classes
abolished resistance to organic heterocyclic compoundc

decreased resistance to oxidative stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005092

has super-classes
altered resistance to oxidative stressc
has sub-classes
abolished resistance to oxidative stressc

decreased resistance to phenolsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007479

has super-classes
altered resistance to phenolsc
has sub-classes
abolished resistance to phenolsc

decreased resistance to pteridinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007004

has super-classes
altered pteridine resistancec
has sub-classes
abolished resistance to pteridinec

decreased resistance to quaternary ammonium salt antimicrobial agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007486

has super-classes
altered resistance to quaternary ammonium salt antimicrobial agentc
has sub-classes
abolished resistance to quaternary ammonium salt antimicrobial agentc

decreased resistance to quinolonec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006040

has super-classes
altered quinolone resistancec
has sub-classes
abolished resistance to quinolonec

decreased resistance to rifamycinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007219

has super-classes
altered rifamycin resistancec
has sub-classes
abolished resistance to rifamycinc

decreased resistance to SDS-EDTA stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005113

has super-classes
altered resistance to SDS-EDTA stressc
has sub-classes
abolished resistance to SDS-EDTA stressc

decreased resistance to sulfonamdec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007833

has super-classes
altered resistance to a sulfonamide antimicrobial agentc
has sub-classes
abolished resistance to sulfonamidec

decreased resistance to tetracyclinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006061

has super-classes
altered tetracycline resistancec
has sub-classes
abolished resistance to tetracyclinec

decreased resistance to UV radiationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005098

is equivalent to
altered UV-radiation resistancec and (has_qualityop some decreased process qualityc)
has super-classes
altered UV-radiation resistancec
has_qualityop some decreased process qualityc
has sub-classes
abolished resistance to UV radiationc, decreased resistance to UV-A radiationc, decreased resistance to UV-B radiationc, decreased resistance to UV-C radiationc

decreased resistance to UV-A radiationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007204

has super-classes
decreased resistance to UV radiationc

decreased resistance to UV-B radiationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007205

has super-classes
decreased resistance to UV radiationc

decreased resistance to UV-C radiationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007201

has super-classes
decreased resistance to UV radiationc
has sub-classes
abolished resistance to UV-C radiationc

decreased resistance to x-ray radiationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005096

has super-classes
altered resistance to x-ray radiationc
has sub-classes
abolished resistance to x-ray radiationc

decreased schizogenyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007427

has super-classes
altered schizogenyc
has sub-classes
abolished schizogenyc

decreased sensitivity of a processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001552

is equivalent to
sensitivity of a processc and (decreased_in_magnitude_relative_toop some normalc)
has super-classes
sensitivity of a processc
decreased process qualityc
decreased_in_magnitude_relative_toop some normalc

decreased sensitivity to bacteriophagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007244

has super-classes
altered bacteriophage sensitivityc
has sub-classes
abolished sensitivity to bacteriophagec, decreased bacteriophage absorptionc, post-injection defectc

decreased septationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005138

has super-classes
altered septationc
has sub-classes
abolished septationc

decreased septation indexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007735

A septation index of zero indicates cell cycle arrest.
has super-classes
altered septation indexc

decreased sexual sporulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007437

has super-classes
altered sexual sporulationc
has sub-classes
abolished sexual sporulationc, decreased ascospore formationc

decreased sexual sporulation frequencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005380

has super-classes
altered sexual sporulation frequencyc
has sub-classes
abolished sexual sporulation frequencyc

decreased sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000587

is equivalent to
sizec and (decreased_in_magnitude_relative_toop some normalc)
has super-classes
sizec
decreased object qualityc
decreased_in_magnitude_relative_toop some normalc
has sub-classes
decreased lengthc, decreased thicknessc, decreased volumec

decreased spore germination efficiencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007223

has super-classes
altered spore germination efficiencyc
has sub-classes
abolished spore germination efficiencyc

decreased spore viabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007839

has super-classes
altered spore viabilityc
has sub-classes
abolished spore viabilityc

decreased stress-induced mutagenesisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005031

has super-classes
altered stress-induced mutagenesisc
has sub-classes
abolished stress-induced mutagenesisc

decreased superoxide dismutase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005169

is equivalent to
altered superoxide dismutase activityc and (has_qualityop some decreased process qualityc)
has super-classes
altered superoxide dismutase activityc
has_qualityop some decreased process qualityc
has sub-classes
abolished superoxide dismutase activityc

decreased survival in macrophagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007943

has super-classes
altered survival in macrophagec
has sub-classes
abolished survival in macrophagec

decreased temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001306

is equivalent to
temperaturec and (decreased_in_magnitude_relative_toop some normalc)
has super-classes
temperaturec
decreased object qualityc
decreased_in_magnitude_relative_toop some normalc

decreased thicknessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000592

is equivalent to
thicknessc and (decreased_in_magnitude_relative_toop some normalc)
has super-classes
decreased sizec
thicknessc
decreased_in_magnitude_relative_toop some normalc

decreased tolerance to an antimicrobial agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007974

has super-classes
altered tolerance to an antimicrobial agent phenotypec

decreased transcription of gene or operonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007118

is equivalent to
altered transcriptionc and (has_qualityop some decreased process qualityc)
has super-classes
altered transcriptionc
has_qualityop some decreased process qualityc
has sub-classes
abolished transcription of gene or operonc, decreased transcription of sigma-factor dependent genesc

decreased transcription of sigma-factor dependent genesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007120

The UniProt accession for the particular sigma factor should be entered in the extension field.
has super-classes
decreased transcription of gene or operonc

decreased translationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007124

has super-classes
altered translationc
has sub-classes
abolished translationc

decreased transportc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007672

has super-classes
altered transportc
has sub-classes
abolished transportc

decreased transporter activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007679

has super-classes
altered transporter activityc
has sub-classes
abolished transporter activityc

decreased urease activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006092

has super-classes
altered urease test resultc
has sub-classes
abolished urease activityc

decreased utilization of dinitrogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007029

has super-classes
altered dinitrogen utilizationc
has sub-classes
abolished utilization of dinitrogenc

decreased utilization of inorganic nitrogen sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007032

has super-classes
altered utilization of inorganic nitrogen sourcec
has sub-classes
abolished utilization of inorganic nitrogenc

decreased utilization of inorganic phosphorus sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007047

has super-classes
altered inorganic phosphorus source utilizationc
has sub-classes
abolished utilization of inorganic phosphorusc

decreased utilization of inorganic sulfurc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007055

has super-classes
altered sulfur source utilization phenotypec
has sub-classes
abolished utilization of inorganic sulfurc

decreased utilization of organic phosphorus sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007050

has super-classes
altered organic phosphorus source utilizationc
has sub-classes
abolished utilization of organic phosphorusc

decreased utilization of organic sulfur sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007058

has super-classes
altered sulfur source utilization phenotypec
has sub-classes
abolished utilization of organic sulfurc

decreased vacuolar sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005146

has super-classes
altered vacuolar morphologyc

decreased vegetative cell diameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007916

has super-classes
decreased cell diameterc

decreased vegetative cell growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007696

Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
has super-classes
altered vegetative cell growthc
has sub-classes
abolished vegetative cell growthc

decreased vegetative cell lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007723

has super-classes
decreased cell lengthc
altered vegetative cell sizec

decreased vegetative cell population growth at high temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007799

has super-classes
altered vegetative cell population growthc

decreased vegetative cell population growth ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007803

has super-classes
altered vegetative cell population growth ratec

decreased vegetative cell population viabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007730

has super-classes
decreased cell population viabilityc
altered vegetative cell population viabilityc
has sub-classes
abolished vegetative cell population viabilityc

decreased vegetative cell volumec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007720

has super-classes
altered vegetative cell sizec
decreased cell volumec

decreased viability of vegetative microbial cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007717

Note that if you have done an experiment that assays the viability of a population of microbial cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (OMP:xx) or one of its descendants.
has super-classes
decreased cell viabilityc
altered vegetative cell viabilityc
has sub-classes
abolished viability of vegetative microbial cellc

decreased virulencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000061

has super-classes
altered virulencec
has sub-classes
abolished virulencec

decreased vitamin/enzyme cofactor requirementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007025

has super-classes
decreased growth factor requirementc
altered vitamin/enzyme cofactor requirementc
has sub-classes
abolished vitamin/enzyme cofactor requirementc

decreased volumec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000596

is equivalent to
volumec and (decreased_in_magnitude_relative_toop some normalc)
has super-classes
decreased sizec
volumec
decreased_in_magnitude_relative_toop some normalc

delaminatedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001514

has super-classes
structurec

delayedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000502

has super-classes
onset qualityc

delayed cell cycle progressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005172

has super-classes
altered cell cyclec

delayed cell fusionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005225

has super-classes
altered cell fusionc

delayed cell fusion during matingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005242

has super-classes
altered cell fusion during matingc

delayed onset of endocytosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005266

has super-classes
altered endocytosisc

delayed spore germinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000016

has super-classes
altered spore germinationc

detached fromc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001453

has super-classes
attachment qualityc

developmental processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0032502

has super-classes
biological_processc
has sub-classes
anatomical structure formation involved in morphogenesisc, single-organism developmental processc, spore germinationc

deviation(from_normal)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000069

has super-classes
qualitativec
has sub-classes
abnormalc, decreased qualityc, increased qualityc, normalc

diazonium blue B staining phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007294

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cell staining phenotypec
has sub-classes
absence of diazonium blue B stainingc, altered diazonium blue B stainingc, presence of diazonium blue B stainingc

differential test phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007130

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbial phenotypec
has sub-classes
altered differential test resultc, catalase test phenotypec, decarboxylase test phenotypec, gas production testc, hemolysis testc, laccase activity phenotypec, oxidase test phenotypec, urease test phenotypec

dinitrogen utilization phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006030

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
nitrogen source utilization phenotypec
has sub-classes
absence of dinitrogen utilizationc, altered dinitrogen utilizationc, presence of dinitrogen utilizationc

diplococcusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000117

has super-classes
cell arrangement phenotypec

discontinuousc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000690

has super-classes
occurrencec

dispersedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001630

has super-classes
positionc

dispersed actin cortical patch localizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007791

has super-classes
altered actin cortical patch localizationc

displacedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002181

has super-classes
positionc
has sub-classes
mislocalisedc

disproportionation of thiosulfatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007278

Disproportionation of thiosulfate is the reaction: thiosulfate + H2O --> SO42- + HS- + H+.
has super-classes
chemolithotrophicc

DNA break phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007602

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
genetic material phenotypec
has sub-classes
absence of DNA breaksc, altered frequency of DNA breaksc, presence of DNA breaksc

DNA metabolic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0006259

has super-classes
cellular macromolecule metabolic processc
nucleic acid metabolic processc
has sub-classes
DNA replicationc

DNA replicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0006260

See also the biological process terms 'DNA-dependent DNA replication ; GO:0006261' and 'RNA-dependent DNA replication ; GO:0006278'.
has super-classes
DNA metabolic processc
cellular macromolecule biosynthetic processc
has sub-classes
cell cycle DNA replicationc

DNA replication phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000307

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
cell cycle phenotypec and (inheres_inop some cell cycle DNA replicationc)
has super-classes
genetic material phenotypec
macromolecular biosynthesis phenotypec
cell cycle phenotypec
inheres_inop some cell cycle DNA replicationc
has sub-classes
altered DNA replicationc

DNA supercoiling phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000294

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
genetic material phenotypec
has sub-classes
absence of negative supercoilingc, absence of positive supercoilingc, altered DNA supercoilingc, presence of negative supercoilingc, presence of positive supercoilingc

dodecahedral capsid shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005398

has super-classes
polyhedral shapec

does not require growth factor(s)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007018

has super-classes
growth factor requirement phenotypec

doublet nucleoidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000152

has super-classes
in vitro nucleoid shapec

drug-dependent population growth phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007264

has super-classes
population growth phenotypec
has sub-classes
absence of drug-dependent population growthc, altered drug-dependence of population growthc, aminoglycoside dependent growthc, macrolide dependent growthc, presence of drug-dependent population growthc

dry colony consistencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000236

has super-classes
colony consistency phenotypec

dull colony sheenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000139

has super-classes
colony sheen phenotypec

durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001309

has super-classes
physical quality of a processc
has sub-classes
decreased durationc, increased durationc

effect of non-nutrient environmental factors on population growth phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007192

has super-classes
population growth phenotypec
has sub-classes
O2 effects on population growth phenotypec, altered population growth rangec, pH effects on population growth phenotypec, pressure effects on population growth phenotypec, solute and water activity effects on population growth phenotypec, temperature effects on population growth phenotypec

ellipticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000947

has super-classes
superellipticc
has sub-classes
circularc

elongated germ tube morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007740

has super-classes
altered germ tube morphologyc

endocytosis phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005261

has super-classes
transport phenotypec
has sub-classes
absence of endocytosisc, altered endocytosisc, presence of endocytosisc

endomembrane system morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005270

has super-classes
endomembrane system phenotypec
has sub-classes
altered endomembrane system morphologyc

endomembrane system phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005269

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cellular component phenotypec
has sub-classes
absence of endomembrane systemc, endomembrane system morphology phenotypec, presence of endomembrane systemc

endospore coat phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008007

has super-classes
endospore external encapsulating structure phenotypec
has sub-classes
absence of an endospore coatc, altered endospore coatc, presence of an endospore coatc

endospore core phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008004

has super-classes
endospore internal structure phenotypec
has sub-classes
absence of the endospore corec, altered corec, presence of a corec

endospore cortex phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008024

has super-classes
endospore external encapsulating structure phenotypec
has sub-classes
absence of an endospore cortexc, altered endospore cortexc, presence of a cortexc

endospore exosporium phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007230

has super-classes
endospore external encapsulating structure phenotypec
has sub-classes
absence of an exosporiumc, altered exosporiumc, presence of an exosporiumc

endospore external encapsulating structure phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007229

has super-classes
endospore morphology phenotypec
has sub-classes
endospore coat phenotypec, endospore cortex phenotypec, endospore exosporium phenotypec, endospore germ cell wall phenotypec, outer endospore membrane phenotypec

endospore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0034301

has super-classes
asexual sporulation resulting in formation of a cellular sporec

endospore formation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000094

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
sporulation phenotypec and (inheres_inop some endospore formationc)
has super-classes
asexual sporulation phenotypec
inheres_inop some endospore formationc
has sub-classes
absence of endospore formationc, altered endospore formationc, presence of endospore formationc

endospore formation stopped at stage 0c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008017

In many bacteria, the first visible morphological change in sporulation is formation of an asymmetric septum that separates the mother cell and forespore compartments.
has super-classes
interrupted endospore formationc

endospore formation stopped at stage IIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008019

has super-classes
interrupted endospore formationc

endospore formation stopped at stage IIIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008020

has super-classes
interrupted endospore formationc

endospore formation stopped at stage IVc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008021

has super-classes
interrupted endospore formationc

endospore formation stopped at stage Vc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008022

has super-classes
interrupted endospore formationc

endospore formation stopped at stage VIc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008023

has super-classes
interrupted endospore formationc

endospore germ cell wall phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008001

has super-classes
endospore external encapsulating structure phenotypec
has sub-classes
absence of an endospore germ cell wallc, altered endospore germ cell wallc, presence of an endospore germ cell wallc

endospore internal structure phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008013

has super-classes
endospore morphology phenotypec
has sub-classes
endospore core phenotypec, inner endospore membrane phenotypec

endospore location phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007224

has super-classes
endospore morphology phenotypec
has sub-classes
central location of endosporec, swollen sporangiumc, terminal location of endosporec

endospore morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007228

has super-classes
spore morphology phenotypec
has sub-classes
altered endospore morphologyc, endospore external encapsulating structure phenotypec, endospore internal structure phenotypec, endospore location phenotypec

energy metabolism phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000224

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
metabolic phenotypec
has sub-classes
chemotrophic phenotypec, fermentation phenotypec, mixotrophic energy metabolismc, phototrophic phenotypec, respiration phenotypec

energy taxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0009453

has super-classes
taxisc
has sub-classes
aerotaxisc

entire marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000151

has super-classes
colony margin phenotypec

envelopec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0031975

has super-classes
cell partc

enzymatic activity phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000221

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbial phenotypec
has sub-classes
absence of enzymatic activityc, acid phosphatase activity phenotypec, alpha-1,3-mannosyltransferase activity phenotypec, altered enzymatic activityc, ferric reductase activity phenotypec, laccase activity phenotypec, phosphatase activity phenotypec, phospholipase activity phenotypec, presence of enzymatic activityc, protein kinase A activity phenotypec, superoxide dismutase activity phenotypec

epoxide resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007495

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
altered epoxide resistancec, not resistant to an epoxidec, resistant to an epoxidec

erose marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000156

has super-classes
colony margin phenotypec

extra or missing processual partsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001564

has super-classes
process qualityc
has sub-classes
having extra processual partsc, lacking processual partsc

facultative anaerobec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000087

has super-classes
commonly used descriptorsc

fermentation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007073

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
energy metabolism phenotypec

ferric reductase activity phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005148

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
enzymatic activity phenotypec
has sub-classes
absence of ferric reductase activityc, altered ferric reductase activityc, presence of ferric reductase activityc

ferrous iron (Fe2+) oxidationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007113

has super-classes
chemolithotrophicc

filamenting cell morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007667

has super-classes
altered cell morphologyc

filamentousc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000072

has super-classes
cell arrangement phenotypec

filamentous colonyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000088

has super-classes
colony form phenotypec

filamentous growth of a multicellular organism phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007557

has super-classes
filamentous growth phenotypec
has sub-classes
clamp cell formation phenotypec

filamentous growth phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005243

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
growth phenotypec
has sub-classes
absence of filamentous growthc, altered filamentous growthc, filamentous growth of a multicellular organism phenotypec, presence of filamentous growthc

filiform marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000157

has super-classes
colony margin phenotypec

flagellum arrangement phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000078

has super-classes
flagellum morphology phenotypec
has sub-classes
amphitrichousc, lophotrichousc, monotrichousc, periplasmic flagellum/flagellac, peritrichous flagellac

flagellum morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000027

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cell projection morphology phenotypec
has sub-classes
absence of flagellumc, altered flagellumc, flagellum arrangement phenotypec, presence of flagellumc

flat colony elevationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000160

has super-classes
colony elevation phenotypec

flocculation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000178

has super-classes
liquid culture morphology phenotypec
has sub-classes
absence of flocculationc, altered flocculationc, presence of flocculationc

fluorescent colonyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000209

has super-classes
colony pigmentation phenotypec

forms single species biofilmc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000205

has super-classes
biofilm formation phenotypec

fosfomycin resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007847

has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
absence of fosfomycin resistancec, altered fosfomycin resistancec, presence of fosfomycin resistancec

fosmidomycin antimicrobial agent resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007855

has super-classes
antimicrobial agent resistance phenotypec

free-living lifestyle phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007646

Free-living lifestyle phenotypes may include the expression of flagella, sensing apparati used for photo- and chemotactic behaviour, and quorum sensing pathways. Please request more specific child terms, as needed.
has super-classes
microbial lifestyle phenotypec

frequencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000044

has super-classes
ratec

fused withc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000642

has super-classes
structurec

galactose-1-phosphate uridyl transferase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000299

This term was obsoleted in response to the decision to not have terms for individual enzyme activities unless those activities are commonly used for identification or classification.

gas production testc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000182

has super-classes
differential test phenotypec

gene expressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0010467

has super-classes
macromolecule metabolic processc

gene expression phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000253

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
microbial phenotypec and (inheres_inop some gene expressionc)
has super-classes
biological process phenotypec
inheres_inop some gene expressionc
has sub-classes
SOS response phenotypec, altered gene expressionc, transcription phenotypec, translation phenotypec

gene expression regulation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007162

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
regulation phenotypec
has sub-classes
altered gene expression regulationc, transcription regulation phenotypec, translation regulation phenotypec

gene silencingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0016458

Note that this process is the opposite of long-term maintenance of gene activation.
has super-classes
negative regulation of gene expressionc
single-organism cellular processc

gene silencing phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005046

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
microbial phenotypec and (inheres_inop some gene silencingc)
has super-classes
genetic material phenotypec
biological process phenotypec
inheres_inop some gene silencingc
has sub-classes
absence of gene silencingc, altered gene silencingc, presence of gene silencingc

genetic material phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000290

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbial phenotypec
has sub-classes
DNA break phenotypec, DNA replication phenotypec, DNA supercoiling phenotypec, Holliday junction structure phenotypec, chromosome segregation phenotypec, gene silencing phenotypec, genetic transfer phenotypec, homologous recombination phenotypec, mitotic recombination phenotypec, mutation frequency phenotypec, nucleoid phenotypec, site-specific recombination phenotypec, stress-induced mutagenesis phenotypec, transposable element transposition phenotypec

genetic transfer phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008028

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
genetic material phenotypec
has sub-classes
natural competence phenotypec

genophore phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000291

This term was obsoleted because it is rarely used. Instead, genophore phenotype is listed as a synonym of nucleoid phenotype.

germ tube morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007738

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cell morphology phenotypec
has sub-classes
absence of germ tubec, altered germ tube morphologyc, presence of germ tubec

golgi apparatus morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005238

has super-classes
golgi apparatus phenotypec
has sub-classes
altered golgi morphologyc

golgi apparatus phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005237

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cellular component phenotypec
has sub-classes
absence of golgi apparatusc, golgi apparatus morphology phenotypec, presence of golgi apparatusc

gram negativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000189

has super-classes
gram stain phenotypec

gram positivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000188

has super-classes
gram stain phenotypec

gram stain phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000191

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cell staining phenotypec
has sub-classes
gram negativec, gram positivec, gram variablec

gram variablec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000190

has super-classes
gram stain phenotypec

granulation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000187

has super-classes
liquid culture morphology phenotypec

growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0040007

See also the biological process term 'cell growth ; GO:0016049'.
has super-classes
biological_processc

growth factor requirement phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007044

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
nutrient utilization phenotypec
has sub-classes
altered growth factor requirementc, does not require growth factor(s)c, requires growth factor(s)c

growth into mediumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000231

has super-classes
colony elevation phenotypec

growth phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000174

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. For phenotypes affecting growth of a population, see OMP:0007167 ! population growth phenotype.
is equivalent to
microbial phenotypec and (inheres_inop some growthc)
has super-classes
biological process phenotypec
inheres_inop some growthc
has sub-classes
agar invasion phenotypec, cell growth phenotypec, filamentous growth phenotypec, lifespan phenotypec

growth rate control of transcriptionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007222

has super-classes
transcription regulation phenotypec

halophilic growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005016

has super-classes
solute and water activity effects on population growth phenotypec

haploid fruiting phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007542

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
asexual reproduction phenotypec
has sub-classes
absence of haploid fruitingc, altered haploid fruitingc, presence of haploid fruitingc

has extra parts of typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002002

In polydactyly, the bearer of the quality is the hand, and the entity type being counted is 'finger'. In EQ syntax, E=hand, Q=<this> E2=finger.
is equivalent to
altered number ofc and (increased_in_magnitude_relative_toop some normalc)
has super-classes
altered number ofc
increased object qualityc
increased_in_magnitude_relative_toop some normalc

has fewer parts of typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002001

Example: [E=hand Q=has_fewer_parts_of_type E2=digit] - applies to an organism that has no less fingers than is normal for organisms of that type.
is equivalent to
lacks parts or has fewer parts of typec and (decreased_in_magnitude_relative_toop some normalc)
has super-classes
lacks parts or has fewer parts of typec
decreased object qualityc
decreased_in_magnitude_relative_toop some normalc

has normal numbers of parts of typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001905

has super-classes
has number ofc

has number ofc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001555

has super-classes
physical object qualityc
has sub-classes
altered number ofc, has normal numbers of parts of typec

having extra processual partsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001561

has super-classes
extra or missing processual partsc

heme utilization phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000451

has super-classes
iron source utilization phenotypec
has sub-classes
absence of heme utilizationc, altered heme utilization phenotypec, presence of heme utilizationc

hemolysis testc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000099

has super-classes
differential test phenotypec
has sub-classes
absence of hemolysisc, altered hemolysis test resultc, presence of hemolysisc

heterocycle biosynthetic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0018130

has super-classes
cellular biosynthetic processc
heterocycle metabolic processc
has sub-classes
nucleobase-containing compound biosynthetic processc

heterocycle metabolic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0046483

has super-classes
cellular metabolic processc
has sub-classes
heterocycle biosynthetic processc, nucleobase-containing compound metabolic processc

heterocyst differentiationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0043158

has super-classes
cell differentiationc

heterocyst formation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000092

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
cell development phenotypec and (inheres_inop some heterocyst differentiationc)
has super-classes
cell development phenotypec
inheres_inop some heterocyst differentiationc
has sub-classes
absence of heterocystsc, altered heterocyst formationc, presence of heterocystsc

Holliday junction structure phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007617

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
genetic material phenotypec
has sub-classes
absence of Holliday junction structuresc, altered frequency of Holliday junction structuresc, presence of Holliday junction structuresc

homologous recombination phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005042

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
genetic material phenotypec
has sub-classes
absence of homologous recombinationc, altered homologous recombinationc, presence of homologous recombinationc

host defense peptides resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007881

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
altered resistance to host defense peptidesc, not resistant to host defense peptidec, resistant to host defense peptidec

host-virus interaction phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000026

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbial phenotypec
has sub-classes
altered host-virus interactionc, bacteriophage sensitivity phenotypec

hyperthermophilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005003

has super-classes
temperature effects on population growth phenotypec

hyphal morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007556

has super-classes
multicellular microorganism morphology phenotypec
has sub-classes
clamp cell morphology phenotypec, clamp connection morphology phenotypec

icosahedral capsid shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005395

has super-classes
polyhedral shapec

imperforatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001821

has super-classes
structure, cavitiesc

impermeablec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000983

has super-classes
permeabilityc

in vitro nucleoid shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000136

has super-classes
nucleoid phenotypec
has sub-classes
doublet nucleoidc, singlet nucleoidc

incomplete structurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0005013

has super-classes
structurec

increased acid phosphatase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005179

has super-classes
altered acid phosphatase activityc

increased acid tolerance responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000381

has super-classes
altered acid tolerance responsec

increased adhesionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005216

has super-classes
altered adhesionc

increased adhesion to hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005212

has super-classes
altered adhesion to hostc

increased aerobic respirationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007178

has super-classes
altered aerobic respirationc

increased aerotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000502

has super-classes
altered aerotaxisc

increased agar invasionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005329

has super-classes
altered agar invasionc

increased akinete formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007420

has super-classes
altered akinete formationc

increased alpha-1,3-mannosyltransferase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005202

has super-classes
altered alpha-1,3-mannosyltransferase activityc

increased amino acid requirementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007019

has super-classes
increased growth factor requirementc
altered amino acid requirementc

increased amount of capsulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000036

has super-classes
altered capsule phenotypec

increased anaerobic population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007926

Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments.
has super-classes
altered anaerobic population growthc
has sub-classes
increased anaerobic population growth ratec, increased anaerobic population growth yieldc

increased anaerobic population growth ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005196

has super-classes
increased anaerobic population growthc

increased anaerobic population growth yieldc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005193

has super-classes
increased anaerobic population growthc

increased anaerobic respirationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007184

has super-classes
altered anaerobic respirationc

increased antimicrobial peptide productionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006172

has super-classes
altered antimicrobial peptide productionc

increased apoptosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007314

has super-classes
altered apoptosisc

increased ascospore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007471

has super-classes
altered ascospore formationc
increased sexual sporulationc

increased asexual spore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007429

has super-classes
altered asexual sporulationc

increased autophagic vesicle formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007336

has super-classes
altered autophagic vesicle formationc

increased basal expression of the SOS responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005020

has super-classes
altered basal expression of the SOS responsec

increased binary fissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006169

has super-classes
altered binary fissionc

increased biofilm formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007020

has super-classes
altered biofilm formationc

increased buddingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006004

has super-classes
altered buddingc
has sub-classes
increased budding frequencyc

increased budding frequencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007424

has super-classes
increased buddingc

increased caffeine resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000459

has super-classes
altered caffeine resistancec

Increased capsule sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007504

has super-classes
altered capsule sizec

increased catalase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000196

has super-classes
altered catalase test resultc

increased cell areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007986

has super-classes
altered cell areac

increased cell area variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007988

has super-classes
altered cell area variabilityc

increased cell aspect ratioc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000226

has super-classes
altered cell aspect ratioc

increased cell aspect ratio variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000235

has super-classes
altered cell aspect ratio variabilityc

increased cell circularityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000064

has super-classes
altered cell circularityc

increased cell circularity variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000186

has super-classes
altered cell circularity variabilityc

increased cell diameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005108

has super-classes
increased cell sizec
has sub-classes
increased vegetative cell diameterc

increased cell diameter variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007982

has super-classes
altered cell diameter variabilityc

increased cell division ratio variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000259

has super-classes
altered cell division ratio variabilityc

increased cell fusionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005222

has super-classes
altered cell fusionc

increased cell fusion during matingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005230

has super-classes
altered cell fusion during matingc

increased cell growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007689

Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
has super-classes
altered cell growthc

increased cell lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000280

The mukB mutant appear to have elongated cell length. This is different from cell filamentation. PMID:1989883.
has super-classes
increased cell sizec
altered cell lengthc
has sub-classes
increased vegetative cell lengthc

increased cell length variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007979

has super-classes
altered cell length variabilityc

increased cell lysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005342

has super-classes
altered cell lysisc

increased cell perimeterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000276

has super-classes
altered cell perimeter lengthc

increased cell perimeter length variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000279

has super-classes
altered cell perimeter length variabilityc

increased cell population growth ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000271

has super-classes
altered cell population growth ratec

increased cell population growth yieldc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000286

has super-classes
altered cell population growth yieldc

increased cell population viabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007703

has super-classes
altered cell population viabilityc
has sub-classes
increased vegetative cell population viabilityc

increased cell population viability upon nitrogen starvationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007806

has super-classes
increased cell population viability upon starvationc

increased cell population viability upon starvationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007805

has super-classes
increased vegetative cell population viabilityc
has sub-classes
increased cell population viability upon nitrogen starvationc

increased cell sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000041

has super-classes
altered cell sizec
has sub-classes
increased cell diameterc, increased cell lengthc, increased cell volumec

increased cell size variability within a cell populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007924

has super-classes
altered cell size variability within a cell populationc

increased cell surface areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007995

has super-classes
altered cell surface areac

increased cell surface area variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007998

has super-classes
altered cell surface area variabilityc

increased cell surface area-to-volume ratioc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000019

has super-classes
altered cell surface area-to-volume ratioc

increased cell surface area-to-volume ratio variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000038

has super-classes
altered cell surface area-to-volume ratio variabilityc

increased cell viabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007262

has super-classes
altered microbial cell viabilityc
has sub-classes
increased viability of vegetative microbial cellc

increased cell volumec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007721

has super-classes
increased cell sizec

increased cell volume variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007992

has super-classes
altered cell volume variabilityc

increased cell wall chitin levelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007627

has super-classes
altered cell wall chitin levelc

increased cell wall protein levelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007631

has super-classes
altered cell wall protein levelc

increased cell-cell self recognitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000387

has super-classes
altered cell-cell self recognitionc

increased cellular pigment accumulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007815

has super-classes
altered cellular pigment accumulationc
has sub-classes
increased cellular pigment accumulationc

increased cellular pigment accumulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007816

has super-classes
increased cellular pigment accumulationc

increased chemotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000505

has super-classes
altered chemotaxisc
has sub-classes
increased negative chemotaxisc, increased positive chemotaxisc

increased colonization of a hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007256

has super-classes
altered colonization of a hostc

increased colonization of host tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005285

has super-classes
altered colonization of host tissuec

increased colonization of mouse tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005299

has super-classes
altered colonization of mouse tissuec

increased colonization of rabbit tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005313

has super-classes
altered colonization of rabbit tissuec

increased colonization of tissue in an immunocompromised hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005292

has super-classes
altered colonization of tissue in an immunocompromised hostc

increased colonization of tissue in an immunocompromised mousec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005306

has super-classes
altered colonization of tissue in an immunocompromised mousec

increased colonization of tissue in an immunocompromised rabbitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005320

has super-classes
altered colonization of tissue in an immunocompromised rabbitc

increased colony sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000165

has super-classes
altered colony size phenotypec

increased concentrationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001162

is equivalent to
concentratedc and (increased_in_magnitude_relative_toop some normalc)
has super-classes
concentratedc
increased object qualityc
increased_in_magnitude_relative_toop some normalc

increased conjugationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007418

has super-classes
altered conjugationc

increased correlation between nucleoid and cell constriction during cell divisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000313

has super-classes
altered correlation between nucleoid and cell constriction during cell divisionc

increased cytoskeleton morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005188

increased decarboxylase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006081

has super-classes
altered decarboxylase test resultc

increased degree of nucleoid constriction at the onset of cell constrictionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000316

has super-classes
altered degree of nucleoid constriction at the onset of cell constrictionc

increased diazonium blue B stainingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007302

has super-classes
altered diazonium blue B stainingc

increased drug-dependence of population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007268

has super-classes
altered drug-dependence of population growthc

increased durationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000498

is equivalent to
durationc and (increased_in_magnitude_relative_toop some normalc)
has super-classes
durationc
increased process qualityc
increased_in_magnitude_relative_toop some normalc

increased endocytosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005263

has super-classes
altered endocytosisc

increased endospore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000014

is equivalent to
altered endospore formationc and (has_qualityop some increased process qualityc)
has super-classes
altered endospore formationc
has_qualityop some increased process qualityc

increased enzymatic activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005102

has super-classes
altered enzymatic activityc

increased ferric reductase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005152

is equivalent to
altered ferric reductase activityc and (has_qualityop some increased process qualityc)
has super-classes
altered ferric reductase activityc
has_qualityop some increased process qualityc

increased filamentous growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005245

has super-classes
altered filamentous growthc

increased flagellum lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000037

has super-classes
altered flagellum lengthc

increased flocculationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007466

has super-classes
altered flocculationc

increased fraction of cells with one nucleoidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000298

has super-classes
altered fraction of cells with one nucleoidc

increased fraction of cells with two nucleoidsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000302

has super-classes
altered fraction of cells with two nucleoidsc

increased fraction of non-constricted cellsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000292

has super-classes
altered fraction of non-constricted cellsc

increased frequency of chromosome missegregationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005061

has super-classes
altered chromosome segregationc

increased frequency of DNA breaksc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007606

has super-classes
altered frequency of DNA breaksc
has sub-classes
increased frequency of double-strand DNA breaksc, increased frequency of single-strand DNA breaksc

increased frequency of double-strand DNA breaksc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007614

has super-classes
increased frequency of DNA breaksc

increased frequency of gene silencingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005064

has super-classes
altered gene silencingc

increased frequency of Holliday junction structuresc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007621

has super-classes
altered frequency of Holliday junction structuresc

increased frequency of homologous recombinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005049

has super-classes
altered homologous recombinationc

increased frequency of persister cellsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007154

has super-classes
altered persister cell phenotypec

increased frequency of single-strand DNA breaksc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007613

has super-classes
increased frequency of DNA breaksc

increased frequency of site-specific recombinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005055

has super-classes
altered site-specific recombinationc

increased gene expressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000267

has super-classes
altered gene expressionc

increased growth factor requirementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007074

has super-classes
altered growth factor requirementc
has sub-classes
increased amino acid requirementc, increased purine requirementc, increased pyrimidine requirementc, increased vitamin/enzyme cofactor requirementc

increased haploid fruitingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007546

has super-classes
altered haploid fruitingc
has sub-classes
increased rate of haploid fruitingc

increased heme utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000452

has super-classes
altered heme utilization phenotypec

increased hemolysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000217

has super-classes
altered hemolysis test resultc

increased heterocyst formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007062

has super-classes
altered heterocyst formationc

increased induced expression of the SOS responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005024

has super-classes
altered induced expression of the SOS responsec

increased inorganic carbon source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007852

has super-classes
altered carbon source utilizationc

increased internalization by macrophagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000373

has super-classes
altered internalization by macrophagec

increased laccase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007289

is equivalent to
altered laccase activityc and (has_qualityop some increased process qualityc)
has super-classes
altered laccase activityc
has_qualityop some increased process qualityc

increased lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000573

is equivalent to
lengthc and (increased_in_magnitude_relative_toop some normalc)
has super-classes
lengthc
increased sizec
increased_in_magnitude_relative_toop some normalc

increased lethalityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007400

has super-classes
altered lethalityc
has sub-classes
increased lethality in immunocompromised micec, increased lethality in micec

increased lethality in an amoeba hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007531

has super-classes
altered lethality in an amoeba hostc

increased lethality in immunocompromised micec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007451

has super-classes
increased lethalityc

increased lethality in micec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007450

has super-classes
increased lethalityc

increased level of cellular reactive oxygen speciesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007661

has super-classes
altered level of cellular reactive oxygen speciesc

increased lifespanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005106

has super-classes
altered lifespan phenotypec

increased matingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005353

has super-classes
altered matingc

increased mating efficiencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005358

has super-classes
altered mating efficiencyc

increased microaerophilic population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007930

Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments.
has super-classes
altered microaerophilic population growthc
has sub-classes
increased microaerophilic population growth ratec

increased microaerophilic population growth ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005258

has super-classes
increased microaerophilic population growthc

increased mitotic recombinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005070

has super-classes
altered mitotic recombinationc

increased motilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000045

is equivalent to
altered motilityc and (has_qualityop some increased process qualityc)
has super-classes
altered motilityc
has_qualityop some increased process qualityc
has sub-classes
increased motility by glidingc, increased motility by swarmingc, increased motility by swimmingc, increased motility by twitchingc

increased motility by glidingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007095

has super-classes
increased motilityc
altered motility by glidingc

increased motility by swarmingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007096

has super-classes
increased motilityc
altered cell motility by swarmingc

increased motility by swimmingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007097

has super-classes
increased motilityc
altered cell motility by swimmingc

increased motility by twitchingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007098

has super-classes
increased motilityc
altered cell motility by twitchingc

increased mucoidyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007322

has super-classes
altered mucoid colony phenotypec

increased multiple fissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006176

has super-classes
altered multiple fissionc

increased mutation frequencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005068

has super-classes
altered mutation frequencyc

increased myxospore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007063

is equivalent to
altered myxospore formationc and (has_qualityop some increased process qualityc)
has super-classes
altered myxospore formationc
has_qualityop some increased process qualityc

increased natural competencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008040

has super-classes
altered natural competencec

increased negative chemotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007054

has super-classes
increased chemotaxisc

increased negative osmotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005375

has super-classes
increased osmotaxisc

Increased negative supercoilingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0001001

has super-classes
altered DNA supercoilingc

increased nucleoid areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000262

has super-classes
altered nucleoid areac

increased nucleoid area variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000265

has super-classes
altered nucleoid area variabilityc

increased number of anucleoid cellsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000289

In Escherichia coli mutations in the muk or par genes result in an increased number of anucleoid cells.
has super-classes
anucleoidc

increased number of flagellac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000213

has super-classes
altered number of flagellac

increased number of pilic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000463

has super-classes
altered pilus phenotypec

increased object qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002305

is equivalent to
physical object qualityc and (increased_in_magnitude_relative_toop some normalc)
has super-classes
physical object qualityc
increased qualityc
increased_in_magnitude_relative_toop some normalc
has sub-classes
has extra parts of typec, increased concentrationc, increased permeabilityc, increased sizec, increased temperaturec

increased occurrencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002051

is equivalent to
occurrencec and (increased_in_magnitude_relative_toop some normalc)
has super-classes
occurrencec
increased process qualityc
increased_in_magnitude_relative_toop some normalc

increased organic carbon source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007071

has super-classes
altered carbon source utilizationc

increased organic nitrogen source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007036

has super-classes
altered organic nitrogen source utilizationc

increased osmotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005374

has super-classes
altered osmotaxisc
has sub-classes
increased negative osmotaxisc, increased positive osmotaxisc

increased outer membrane vesicle productionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006158

has super-classes
altered outer membrane vesicle productionc

increased oxidase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006086

has super-classes
altered oxidase test resultc

increased permeabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001577

is equivalent to
permeablec and (increased_in_magnitude_relative_toop some normalc)
has super-classes
permeablec
increased object qualityc
increased_in_magnitude_relative_toop some normalc

increased phosphatase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005164

is equivalent to
altered phosphatase activityc and (has_qualityop some increased process qualityc)
has super-classes
altered phosphatase activityc
has_qualityop some increased process qualityc

increased phospholipase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005062

is equivalent to
altered phospholipase activityc and (has_qualityop some increased process qualityc)
has super-classes
altered phospholipase activityc
has_qualityop some increased process qualityc

increased plaque size phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008054

has super-classes
altered plaque size phenotypec

increased ploidy in a vegetative microbial cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007939

has super-classes
altered vegetative cell phenotypec
has sub-classes
increased spontaneous diploidization in a vegetative microbial cellc

increased population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007597

has super-classes
altered population growthc

increased population growth at acidic pHc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007009

has super-classes
altered effects of pH on population growthc

increased population growth at alkaline pHc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007011

has super-classes
altered effects of pH on population growthc

increased population growth at high temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007953

has super-classes
altered population growth at high temperaturec

increased population growth at low temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007959

has super-classes
altered population growth at low temperaturec

increased population growth during nutrient limitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007966

has super-classes
altered cell population growth during nutrient limitationc

increased population growth in high osmolarityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007520

has super-classes
altered population growth in high osmolarityc

increased population growth on defined mediumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007778

has super-classes
altered population growth on defined mediumc

increased population growth ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000283

has super-classes
altered population growth ratec

increased population growth yieldc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007643

has super-classes
altered population growth yieldc

increased positive chemotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007053

has super-classes
increased chemotaxisc

increased positive osmotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005376

has super-classes
increased osmotaxisc

increased positive supercoilingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007003

has super-classes
altered DNA supercoilingc

increased process qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002304

is equivalent to
process qualityc and (increased_in_magnitude_relative_toop some normalc)
has super-classes
process qualityc
increased qualityc
increased_in_magnitude_relative_toop some normalc
has sub-classes
increased durationc, increased occurrencec, increased ratec, increased sensitivity of a processc

increased protein kinase A activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005158

is equivalent to
altered protein kinase A activityc and (has_qualityop some increased process qualityc)
has super-classes
altered protein kinase A activityc
has_qualityop some increased process qualityc

increased protein secretionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007348

has super-classes
altered protein secretionc

increased purine requirementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007023

has super-classes
increased growth factor requirementc
altered purine requirementc

increased pyrimidine requirementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007388

has super-classes
increased growth factor requirementc
altered pyrimidine requirementc

increased qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002300

is equivalent to
qualityc and (increased_in_magnitude_relative_toop some normalc)
has super-classes
deviation(from_normal)c
increased_in_magnitude_relative_toop some normalc
has sub-classes
increased object qualityc, increased process qualityc

increased quorum sensingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007027

has super-classes
altered quorum sensing phenotypec

increased ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000912

is equivalent to
ratec and (increased_in_magnitude_relative_toop some normalc)
has super-classes
ratec
increased process qualityc
increased_in_magnitude_relative_toop some normalc

increased rate of haploid fruitingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007551

has super-classes
increased haploid fruitingc

increased rate of transposable element transpositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005074

has super-classes
altered transposable element transposition phenotypec

increased relative timing of cell constrictionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000357

has super-classes
altered timing of cell constrictionc

increased resistance to a benzamidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007384

has super-classes
altered resistance to benzamidesc

increased resistance to a chelatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007913

has super-classes
altered resistance to a chelatorc

increased resistance to a chemicalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007250

has super-classes
altered resistance to chemicalc

increased resistance to a metalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007888

has super-classes
altered resistance to a metalc

Increased resistance to a nucleosidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007362

has super-classes
altered resistance to a nucleosidec

increased resistance to a surfactantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007895

has super-classes
altered resistance to a surfactantc

increased resistance to a urea derivativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007537

The original term was deemed to be too granular and were replaced with OMP:0007250 ! increased resistance to a chemical. When using this term for annotation, enter a database identifier for the specific chemical in the Annotation Extension field.

increased resistance to A22c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007872

This term and was deemed to be too granular. Instead, use OMP:0007878 increased resistance to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field.

increased resistance to acidic pH stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005076

has super-classes
altered resistance to acidic pH stress phenotypec

increased resistance to alkaline pH stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005078

has super-classes
altered resistance to alkaline pH stress phenotypec

increased resistance to alkylating agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007376

has super-classes
altered resistance to an alkylating agentc

increased resistance to aminoglycosidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006058

has super-classes
altered aminoglycoside resistancec

increased resistance to aminopyrimidinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000334

has super-classes
altered aminopyrimidine resistancec

increased resistance to an acridinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007369

has super-classes
altered resistance to an acridinec

increased resistance to an antimicrobial agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007878

has super-classes
altered resistance to an antimicrobial agentc

increased resistance to an epoxidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007499

has super-classes
altered epoxide resistancec

increased resistance to azole compoundc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006053

has super-classes
altered azole resistancec

increased resistance to bacteriocinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006049

has super-classes
altered bacteriocin resistancec
has sub-classes
bacteriocin tolerantc, decreased absorption of bacteriocinc

increased resistance to beta-lactam compoundc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006045

has super-classes
altered beta-lactam resistancec

increased resistance to bicyclomycinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007868

increased resistance to bile acidsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007902

has super-classes
altered resistance to bile acidsc

increased resistance to chloramphenicolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006068

has super-classes
altered chloramphenicol resistancec

increased resistance to cold shockc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007587

has super-classes
altered resistance to cold shockc

increased resistance to dessication stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005087

has super-classes
altered resistance to dessication stress phenotypec

increased resistance to fosfomycinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007859

has super-classes
altered fosfomycin resistancec

increased resistance to freeze/thawing stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005089

has super-classes
altered resistance to freeze/thaw stressc

increased resistance to gamma-ray radiationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005093

has super-classes
altered resistance to gamma-ray radiationc

increased resistance to heatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007590

has super-classes
altered resistance to heatc

increased resistance to host defense peptidesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007174

has super-classes
altered resistance to host defense peptidesc

increased resistance to killing by hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005142

has super-classes
altered resistance to killing by hostc

increased resistance to lantibioticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006014

has super-classes
altered lantibiotic resistance phenotypec

increased resistance to macrolidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006037

has super-classes
altered resistance to macrolidec

increased resistance to mitomycinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007653

has super-classes
altered mitomycin resistancec

increased resistance to nitrofuranc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007827

has super-classes
altered nitrofuran resistancec

increased resistance to nutrient limitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007936

has super-classes
altered resistance to nutrient limitationc

increased resistance to organic aromatic compoundsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005347

has super-classes
altered organic aromatic compound resistancec

increased resistance to organic heterocyclic compoundc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005278

has super-classes
altered organic heterocyclic compound resistancec

increased resistance to oxidative stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005091

has super-classes
altered resistance to oxidative stressc

increased resistance to phenolsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007478

has super-classes
altered resistance to phenolsc

increased resistance to pteridinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006074

has super-classes
altered pteridine resistancec

increased resistance to quaternary ammonium salt antimicrobial agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007485

has super-classes
altered resistance to quaternary ammonium salt antimicrobial agentc

increased resistance to quinolonec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006041

has super-classes
altered quinolone resistancec

increased resistance to rifamycinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007220

has super-classes
altered rifamycin resistancec

increased resistance to SDS-EDTA stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005114

has super-classes
altered resistance to SDS-EDTA stressc

increased resistance to sulfonamidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007832

has super-classes
altered resistance to a sulfonamide antimicrobial agentc

increased resistance to tetracyclinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006063

has super-classes
altered tetracycline resistancec

increased resistance to UV radiationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005097

is equivalent to
altered UV-radiation resistancec and (has_qualityop some increased process qualityc)
has super-classes
altered UV-radiation resistancec
has_qualityop some increased process qualityc
has sub-classes
increased resistance to UV-Ac, increased resistance to UV-Bc, increased resistance to UV-Cc

increased resistance to UV-Ac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007206

has super-classes
increased resistance to UV radiationc

increased resistance to UV-Bc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007207

has super-classes
increased resistance to UV radiationc

increased resistance to UV-Cc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007208

has super-classes
increased resistance to UV radiationc

increased resistance to x-ray radiationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005095

has super-classes
altered resistance to x-ray radiationc

increased schizogenyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007426

has super-classes
altered schizogenyc

increased sensitivity of a processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001551

is equivalent to
sensitivity of a processc and (increased_in_magnitude_relative_toop some normalc)
has super-classes
sensitivity of a processc
increased process qualityc
increased_in_magnitude_relative_toop some normalc

increased sensitivity to bacteriophagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007271

has super-classes
altered bacteriophage sensitivityc

increased septationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005137

has super-classes
altered septationc

increased septation indexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007736

has super-classes
altered septation indexc

increased sexual sporulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007436

has super-classes
altered sexual sporulationc
has sub-classes
increased ascospore formationc

increased sexual sporulation frequencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005379

has super-classes
altered sexual sporulation frequencyc

increased sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000586

is equivalent to
sizec and (increased_in_magnitude_relative_toop some normalc)
has super-classes
sizec
increased object qualityc
increased_in_magnitude_relative_toop some normalc
has sub-classes
increased lengthc, increased thicknessc, increased volumec

increased spontaneous diploidization in a vegetative microbial cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007940

has super-classes
increased ploidy in a vegetative microbial cellc

increased spore germination efficiencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007293

has super-classes
altered spore germination efficiencyc

increased spore viabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007840

has super-classes
altered spore viabilityc

increased stress-induced mutagenesisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005030

has super-classes
altered stress-induced mutagenesisc

increased substrate bindingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000304

This term was obsoleted in response to the decision that Kd measurements are too granular a phenotype for OMP, at least at this time. The issue can be reconsidered if a need for such terms arises in the future.

increased superoxide dismutase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005170

is equivalent to
altered superoxide dismutase activityc and (has_qualityop some increased process qualityc)
has super-classes
altered superoxide dismutase activityc
has_qualityop some increased process qualityc

increased survival in macrophagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007942

has super-classes
altered survival in macrophagec

increased temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001305

is equivalent to
temperaturec and (increased_in_magnitude_relative_toop some normalc)
has super-classes
temperaturec
increased object qualityc
increased_in_magnitude_relative_toop some normalc

increased thicknessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000591

is equivalent to
thicknessc and (increased_in_magnitude_relative_toop some normalc)
has super-classes
increased sizec
thicknessc
increased_in_magnitude_relative_toop some normalc

increased threshold for positive chemotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007276

has super-classes
decreased chemotaxisc

increased tolerance to an antimicrobial agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007973

has super-classes
altered tolerance to an antimicrobial agent phenotypec

increased transcription of gene or operonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007117

is equivalent to
altered transcriptionc and (has_qualityop some increased process qualityc)
has super-classes
altered transcriptionc
has_qualityop some increased process qualityc
has sub-classes
constitutive transcriptionc, increased transcription of sigma-factor dependent genesc

increased transcription of sigma-factor dependent genesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007121

The UniProt accession for the particular sigma factor should be entered in the extension field.
has super-classes
increased transcription of gene or operonc

Increased translationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007123

has super-classes
altered translationc

increased transportc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007671

has super-classes
altered transportc

increased transporter activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007680

has super-classes
altered transporter activityc

increased urease activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006091

has super-classes
altered urease test resultc

increased utilization of dinitrogenc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007030

has super-classes
altered dinitrogen utilizationc

increased utilization of inorganic nitrogen sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007033

has super-classes
altered utilization of inorganic nitrogen sourcec

increased utilization of inorganic phosphorus sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007048

has super-classes
altered inorganic phosphorus source utilizationc

increased utilization of inorganic sulfurc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007056

has super-classes
altered sulfur source utilization phenotypec

increased utilization of organic phosphorus sourcec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007051

has super-classes
altered organic phosphorus source utilizationc

increased utilization of organic sulfurc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007059

has super-classes
altered sulfur source utilization phenotypec

increased vacuolar sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005147

has super-classes
altered vacuolar morphologyc

increased vegetative cell diameterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007722

has super-classes
increased cell diameterc
altered vegetative cell sizec

increased vegetative cell growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007695

Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
has super-classes
altered vegetative cell growthc

increased vegetative cell lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007707

has super-classes
increased cell lengthc
altered vegetative cell sizec

increased vegetative cell population growth ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007802

has super-classes
altered vegetative cell population growth ratec

increased vegetative cell population viabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007804

has super-classes
increased cell population viabilityc
altered vegetative cell population viabilityc
has sub-classes
increased cell population viability upon starvationc

increased viability of vegetative microbial cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007841

has super-classes
increased cell viabilityc
altered vegetative cell viabilityc

increased virulencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000062

has super-classes
altered virulencec

increased vitamin/enzyme cofactor requirementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007024

has super-classes
increased growth factor requirementc
altered vitamin/enzyme cofactor requirementc

increased volumec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000595

is equivalent to
volumec and (increased_in_magnitude_relative_toop some normalc)
has super-classes
increased sizec
volumec
increased_in_magnitude_relative_toop some normalc

inner endospore membrane phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008014

has super-classes
endospore internal structure phenotypec
has sub-classes
absence of an inner endospore membranec, altered inner endospore membranec, presence of an inner endospore membranec

inorganic nitrogen source utilization phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007013

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
nitrogen source utilization phenotypec
has sub-classes
absence of inorganic nitrogen utilizationc, altered utilization of inorganic nitrogen sourcec, presence of inorganic nitrogen source utilizationc, utilization of inorganic nitrogen phenotypec

inorganic phosphorus source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007045

has super-classes
phosphorus source utilization phenotypec
has sub-classes
altered inorganic phosphorus source utilizationc

internalization by macrophage phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000369

has super-classes
survival in macrophage phenotypec
has sub-classes
absence of internalization by macrophagec, altered internalization by macrophagec, presence of internalization by macrophagec

interrupted endospore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008018

has super-classes
altered endospore formationc
has sub-classes
endospore formation stopped at stage 0c, endospore formation stopped at stage IIc, endospore formation stopped at stage IIIc, endospore formation stopped at stage IVc, endospore formation stopped at stage Vc, endospore formation stopped at stage VIc

iridescent colonyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000232

has super-classes
colony pigmentation phenotypec

iron source utilization phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007061

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
nutrient utilization phenotypec
has sub-classes
altered iron source utilizationc, heme utilization phenotypec

irregular colonyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000167

has super-classes
colony form phenotypec

irregular nucleoid spacingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000142

has super-classes
nucleoid spacingc

irregular spatial patternc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000330

has super-classes
spatial patternc
has sub-classes
aggregatedc

isometric capsidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005396

has super-classes
polyhedral shapec

J-shapedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0015020

has super-classes
concave 3-D shapec

kinkedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001798

has super-classes
bentc

laccase activity phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007285

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Laccase is involved in the synthesis of fungal melanin.
has super-classes
enzymatic activity phenotypec
differential test phenotypec
has sub-classes
absence of laccase activityc, altered laccase activityc, presence of laccase activityc

lacking processual partsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001558

has super-classes
extra or missing processual partsc

lacks all parts of typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002000

Example: [E=organism Q=lacks_all_parts_of_type E2=Wing] - applies to an organism. A relational quality in which the bearer entity has no parts of the specified type. The bearer of this quality has_part = 0 of the indicated entity type, where a comparable organism usually has at least 1 part of the same type. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e lacks all parts of type X at time t, then there exists no instances x of X at t such that x part_of e that has no wings, where wings are normally present in that organism type. In OWL this is equivalent to a restriction on the OBO_REL:has_part relation with cardinality=0, i.e has_part 0 E2.
has super-classes
lacks parts or has fewer parts of typec

lacks parts or has fewer parts of typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001999

has super-classes
altered number ofc
has sub-classes
has fewer parts of typec, lacks all parts of typec

lantibiotic resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006011

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
bacteriocin resistance phenotypec
has sub-classes
altered lantibiotic resistance phenotypec, not resistant to lantibioticc, resistant to lantibioticc

lemon-shapedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002345

has super-classes
convex 3-D shapec

lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000122

has super-classes
1-D extentc
has sub-classes
decreased lengthc, increased lengthc

lethal (sensu genetics)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000718

has super-classes
viabilityc

lethality phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007394

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbe-host interaction phenotypec
has sub-classes
absence of lethalityc, altered lethalityc, presence of lethalityc

level of cellular reactive oxygen species phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007657

has super-classes
level of substance in cell phenotypec
has sub-classes
absence of cellular reactive oxygen speciesc, altered level of cellular reactive oxygen speciesc, presence of cellular reactive oxygen speciesc

level of substance in cell phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007656

has super-classes
cellular physical quality phenotypec
has sub-classes
altered level of substance in cellc, level of cellular reactive oxygen species phenotypec

lifespan phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000090

has super-classes
growth phenotypec
has sub-classes
altered lifespan phenotypec

liquid culture morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000177

has super-classes
population morphology phenotypec
has sub-classes
altered liquid culture morphologyc, flocculation phenotypec, granulation phenotypec

lobatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001367

has super-classes
surface feature shapec

lobate marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000155

has super-classes
colony margin phenotypec

lobed cell shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000131

has super-classes
cell shape phenotypec

localizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0051179

has super-classes
biological_processc

locomotionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0040011

has super-classes
biological_processc
has sub-classes
cell motilityc, taxisc

locomotion phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000312

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
microbial phenotypec and (inheres_inop some locomotionc)
has super-classes
biological process phenotypec
inheres_inop some locomotionc
has sub-classes
motility phenotypec, taxis phenotypec

lophotrichousc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000081

has super-classes
flagellum arrangement phenotypec

MacConkey agar phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000256

This term was made obsolete because the appearance of colonies on MacConkey agar was determined to be evidence for a phenotype rather than a phenotype itself.

macrolide dependent growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005100

has super-classes
drug-dependent population growth phenotypec

macrolide resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000321

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
altered resistance to macrolidec, not resistant to macrolidec, resistant to macrolidec

macromolecular biosynthesis phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000306

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
biosynthetic phenotypec
has sub-classes
DNA replication phenotypec

macromolecule biosynthetic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0009059

has super-classes
macromolecule metabolic processc
organic substance biosynthetic processc
has sub-classes
RNA biosynthetic processc, cellular macromolecule biosynthetic processc

macromolecule metabolic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0043170

has super-classes
organic substance metabolic processc
has sub-classes
cellular macromolecule metabolic processc, gene expressionc, macromolecule biosynthetic processc, nucleic acid metabolic processc, protein metabolic processc

malformed pilusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000035

has super-classes
altered pilus phenotypec

mating efficiency phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005356

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Depending on the assay used, a change in measured mating efficiency may reflect a change in conjugation frequency (see OMP:0007412 mating phenotype and its descendants) and/or a change in some other biological process such as sexual sporulation (see OMP:0007045 and its descendants). For this reason mating efficiency phenotype is not a child of mating phenotype, but instead a child of sexual reproduction phenotype (OMP:0007406).
has super-classes
sexual reproduction phenotypec
has sub-classes
altered mating efficiencyc

mating phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007412

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. An example of conjugation with cellular fusion is found in Saccharomyces cerevisiae.
has super-classes
sexual reproduction phenotypec
has sub-classes
absence of matingc, altered matingc, cell fusion during mating phenotypec, presence of matingc

meiotic nuclear division phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007561

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
has super-classes
cellular process phenotypec
has sub-classes
absence of meiotic nuclear divisionc, altered meiotic nuclear divisionc, presence of meiotic nuclear divisionc

mesophilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005005

has super-classes
temperature effects on population growth phenotypec

metabolic phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000180

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbial phenotypec
has sub-classes
biosynthetic phenotypec, chemical production phenotypec, energy metabolism phenotypec, metabolite accumulationc

metabolic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0008152

Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions.
has super-classes
biological_processc
has sub-classes
biosynthetic processc, cellular metabolic processc, nitrogen compound metabolic processc, organic substance metabolic processc, primary metabolic processc, single-organism metabolic processc

metabolite accumulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000252

has super-classes
metabolic phenotypec

metal resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007890

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
chemical resistance phenotypec
has sub-classes
altered resistance to a metalc, not resistant to a metalc, resistant to a metalc

microaerophilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000171

Optimal oxygen levels for growth of typical microaerophilic bacteria is 2 to 10% O2, and growth is impaired by atmospheric oxygen levels (approx. 21%).
has super-classes
commonly used descriptorsc

microaerophilic population growth phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005254

has super-classes
O2 effects on population growth phenotypec
has sub-classes
absence of microaerophilic growthc, altered microaerophilic population growthc, presence of microaerophilic population growthc

microbe-host interaction phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000197

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbial phenotypec
has sub-classes
altered microbe-host interactionc, colonization of a host phenotypec, lethality phenotypec, resistance to killing by host phenotypec, survival in macrophage phenotypec, virulence phenotypec

microbial cell viability phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007259

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cellular physical quality phenotypec
has sub-classes
absence of microbial cell viabilityc, altered microbial cell viabilityc, presence of microbial cell viabilityc, spore viability phenotypec

microbial communication phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000101

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
multi-organism process phenotypec
has sub-classes
nanotube mediated communicationc, quorum sensing phenotypec

microbial lifestyle phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007645

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbial phenotypec
has sub-classes
attached lifestyle phenotypec, free-living lifestyle phenotypec

microbial phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000000

has sub-classes
altered microbial phenotypec, biological process phenotypec, cell arrangement phenotypec, cell phenotypec, cell staining phenotypec, cellular component phenotypec, commonly used descriptorsc, differential test phenotypec, enzymatic activity phenotypec, genetic material phenotypec, host-virus interaction phenotypec, metabolic phenotypec, microbe-host interaction phenotypec, microbial lifestyle phenotypec, molecular function phenotypec, multi-organism process phenotypec, multicellular microorganism morphology phenotypec, nutrient utilization phenotypec, population phenotypec, regulation phenotypec, serotype phenotypec, terminal phenotypec, titan cell formation phenotypec, virus phenotypec

microtubule cytoskeleton phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007759

has super-classes
cytoskeleton phenotypec
has sub-classes
absence of microtubule cytoskeletonc, altered microtubule cytoskeletonc, altered microtubule cytoskeleton morphologyc, presence of microtubule cytoskeletonc

midcell nucleoid localizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000146

has super-classes
nucleoid localizationc

mislocalisedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000628

has super-classes
displacedc

mitomycin resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007649

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
altered mitomycin resistancec, not resistant to mitomycinc, resistant to mitomycinc

mitotic recombination phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005045

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
genetic material phenotypec
has sub-classes
absence of mitotic recombinationc, altered mitotic recombinationc, presence of mitotic recombinationc

mixotrophic carbon source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007274

has super-classes
carbon source utilization phenotypec

mixotrophic energy metabolismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007851

has super-classes
energy metabolism phenotypec

mobilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000004

Should be defined using translocation.
has super-classes
physical qualityc

molecular function phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007674

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbial phenotypec
has sub-classes
transporter activity phenotypec

molecular qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002182

has super-classes
physical object qualityc
has sub-classes
concentration ofc

mononucleatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001407

has super-classes
nucleatedc

monotrichousc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000079

has super-classes
flagellum arrangement phenotypec

more convex colonyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007709

has super-classes
altered colony morphologyc

more irregular colony marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007737

has super-classes
altered colony morphologyc

more rod-like cell shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007090

has super-classes
cylindrical cell shapec
altered cell shapec

more rounded cell shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007102

has super-classes
altered cell shapec
has sub-classes
more rounded vegetative cellc

more rounded vegetative cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007757

has super-classes
more rounded cell shapec
altered vegetative cell shapec

more turbid plaque appearancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008052

has super-classes
altered plaque appearancec

morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000051

has super-classes
physical object qualityc
has sub-classes
shapec, sizec, structurec, texturec

motility phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000001

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
locomotion phenotypec and (inheres_inop some cellc)
has super-classes
locomotion phenotypec
cellular component phenotypec
inheres_inop some cellc
has sub-classes
absence of motilityc, altered motilityc, presence of motilityc

mucoid colony surface phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007319

has super-classes
colony surface phenotypec
has sub-classes
absence of mucoid coloniesc, altered mucoid colony phenotypec, presence of mucoid coloniesc

multi-organism process phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005116

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbial phenotypec
has sub-classes
biofilm formation phenotypec, conjugation phenotypec, microbial communication phenotypec

multicellular microorganism morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007555

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbial phenotypec
has sub-classes
hyphal morphology phenotypec

multinucleatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001908

has super-classes
nucleatedc
has sub-classes
binucleatec

multiple fission phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007068

has super-classes
asexual reproduction phenotypec
has sub-classes
absence of multiple fissionc, altered multiple fissionc, presence of multiple fissionc, schizogeny phenotypec

multiple nucleoidsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000144

has super-classes
nucleoid number phenotypec

multiseptate vegetative cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007770

has super-classes
altered subcellular component phenotype during vegetative growthc

mutation frequency phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005048

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
genetic material phenotypec
has sub-classes
altered mutation frequencyc

myxospore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0034303

has super-classes
asexual sporulation resulting in formation of a cellular sporec

myxospore formation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000096

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
sporulation phenotypec and (inheres_inop some myxospore formationc)
has super-classes
asexual sporulation phenotypec
inheres_inop some myxospore formationc
has sub-classes
absence of myxospore formationc, altered myxospore formationc, presence of myxospore formationc

nanotube mediated communicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000201

has super-classes
microbial communication phenotypec

nanotube phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000175

has super-classes
cell projection morphology phenotypec
has sub-classes
absence of nanotubesc, altered nanotube phenotypec, presence of nanotubesc

natural competence phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008035

has super-classes
genetic transfer phenotypec
has sub-classes
absence of natural competencec, altered natural competencec, presence of natural competencec

negative regulation of biological processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0048519

has super-classes
regulation of biological processc
negatively regulatesop some biological_processc
has sub-classes
negative regulation of metabolic processc

negative regulation of gene expressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0010629

has super-classes
regulation of gene expressionc
negative regulation of macromolecule metabolic processc
negatively regulatesop some gene expressionc
has sub-classes
gene silencingc

negative regulation of macromolecule metabolic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0010605

has super-classes
negative regulation of metabolic processc
regulation of macromolecule metabolic processc
negatively regulatesop some macromolecule metabolic processc
has sub-classes
negative regulation of gene expressionc

negative regulation of metabolic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0009892

has super-classes
regulation of metabolic processc
negative regulation of biological processc
negatively regulatesop some metabolic processc
has sub-classes
negative regulation of macromolecule metabolic processc

neutrophilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005010

has super-classes
pH effects on population growth phenotypec

nitrofuran resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007821

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
altered nitrofuran resistancec, not resistant to nitrofuranc, resistant to nitrofuranc

nitrogen compound metabolic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0006807

Note that amino acid and derivative metabolism should not be annotated here. Instead use the 'amino acid and derivative metabolism' node.
has super-classes
metabolic processc
has sub-classes
cellular nitrogen compound metabolic processc

nitrogen source utilization phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006026

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
nutrient utilization phenotypec
has sub-classes
altered nitrogen source utilizationc, dinitrogen utilization phenotypec, inorganic nitrogen source utilization phenotypec, organic nitrogen source utilization phenotypec

non-pigmented colonyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000137

has super-classes
colony pigmentation phenotypec

nonviable after spore germinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007725

has super-classes
absence of microbial vegetative cell viabilityc

nonviable cell populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007458

has super-classes
population viability phenotypec
has sub-classes
nonviable vegetative cell populationc

nonviable cell populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007699

has super-classes
cell population viability phenotypec
has sub-classes
nonviable spore populationc, nonviable vegetative cell populationc

nonviable sporec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007837

has super-classes
spore viability phenotypec
has sub-classes
abolished spore viabilityc

nonviable spore populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007701

has super-classes
nonviable cell populationc

nonviable vegetative cell populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007461

has super-classes
nonviable cell populationc

nonviable vegetative cell populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007700

has super-classes
nonviable cell populationc

normalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000461

has super-classes
deviation(from_normal)c

not resistant to a chelatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007910

has super-classes
chelator resistance phenotypec
has sub-classes
abolished resistance to a chelatorc

not resistant to a chemicalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007246

has super-classes
chemical resistance phenotypec
has sub-classes
not resistant to a metalc

not resistant to a metalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007885

has super-classes
not resistant to a chemicalc
metal resistance phenotypec
has sub-classes
abolished resistance to a metalc

not resistant to a nucleosidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007360

has super-classes
nucleoside resistance phenotypec
has sub-classes
abolished resistance to a nucleosidec

not resistant to a sulfonamide antimicrobial agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007830

has super-classes
sulfonamide antimicrobial agent resistance phenotypec
has sub-classes
abolished resistance to sulfonamidec

not resistant to a surfactantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007893

has super-classes
surfactant resistance phenotypec
has sub-classes
abolished resistance to a surfactantc

not resistant to a urea derivativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007535

The original term was deemed to be too granular.

not resistant to alkaloidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007135

has super-classes
alkaloid chemical resistance phenotypec

not resistant to alkylating agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007374

has super-classes
alkylating agent resistance phenotypec
has sub-classes
abolished resistance to alkylating agentc

not resistant to aminoglycosidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006059

has super-classes
aminoglycoside antimicrobial agent resistance phenotypec
has sub-classes
abolished resistance to aminoglycosidec

not resistant to aminopyrimidinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000436

has super-classes
aminopyrimidine resistance phenotypec
has sub-classes
abolished resistance to aminopyrimidinec

not resistant to an acridinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007367

has super-classes
acridine antimicrobial agent resistance phenotypec
has sub-classes
abolished resistance to an acridinec

not resistant to an antimicrobial agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007877

has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
abolished resistance to an antimicrobial agentc, tolerance to an antimicrobial agent phenotypec

not resistant to an epoxidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007497

has super-classes
epoxide resistance phenotypec
has sub-classes
abolished resistance to an epoxidec

not resistant to azolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006054

has super-classes
azole antimicrobial agent resistance phenotypec
has sub-classes
abolished resistance to azolec

not resistant to bacteriocinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006050

has super-classes
bacteriocin resistance phenotypec
has sub-classes
abolished resistance to bacteriocinc

not resistant to benzamidesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007382

has super-classes
benzamides resistance phenotypec

not resistant to beta-lactamc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006046

has super-classes
beta-lactam resistance phenotypec
has sub-classes
abolished resistance to beta-lactamc

not resistant to bile acidsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007900

has super-classes
bile acids resistance phenotypec
has sub-classes
abolished resistance to bile acidsc

not resistant to caffeinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000458

has super-classes
caffeine resistance phenotypec
has sub-classes
abolished caffeine resistancec

not resistant to chloramphenicolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006069

has super-classes
chloramphenicol resistance phenotypec
has sub-classes
abolished resistance to chloramphenicolc

not resistant to host defense peptidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007172

has super-classes
host defense peptides resistance phenotypec
has sub-classes
abolished resistance to host defense peptidesc

not resistant to lantibioticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006072

has super-classes
lantibiotic resistance phenotypec
has sub-classes
abolished resistance to lantibioticc

not resistant to macrolidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006038

has super-classes
macrolide resistance phenotypec
has sub-classes
abolished resistance to macrolidec

not resistant to mitomycinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007651

has super-classes
mitomycin resistance phenotypec
has sub-classes
abolished resistance to mitomycinc

not resistant to nitrofuranc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007823

has super-classes
nitrofuran resistance phenotypec
has sub-classes
abolished resistance to nitrofuranc

not resistant to organic aromatic compoundsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005348

has super-classes
organic aromatic compound resistance phenotypec

not resistant to organic heterocyclic compoundc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005279

has super-classes
organic heterocyclic compound resistance phenotypec
has sub-classes
abolished resistance to organic heterocyclic compoundc

not resistant to phenolsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007476

has super-classes
phenolic antimicrobial agent resistance phenotypec
has sub-classes
abolished resistance to phenolsc

not resistant to pteridinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006075

has super-classes
pteridine resistance phenotypec
has sub-classes
abolished resistance to pteridinec

not resistant to quaternary ammonium salt antimicrobial agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007483

has super-classes
quaternary ammonium salts antimicrobial agent resistance phenotypec
has sub-classes
abolished resistance to quaternary ammonium salt antimicrobial agentc

not resistant to quinolonec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006042

has super-classes
quinolone resistance phenotypec
has sub-classes
abolished resistance to quinolonec

not resistant to rifamycinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007217

has super-classes
rifamycin resistance phenotypec
has sub-classes
abolished resistance to rifamycinc

not resistant to tetracyclinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006064

has super-classes
tetracycline resistance phenotypec
has sub-classes
abolished resistance to tetracyclinec

not sensitive to bacteriophagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007239

has super-classes
bacteriophage sensitivity phenotypec
has sub-classes
abolished sensitivity to bacteriophagec

nuclear morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007339

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cell morphology phenotypec
has sub-classes
altered nuclear morphologyc

nuclear position phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007344

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cell morphology phenotypec
has sub-classes
altered nuclear positionc

nucleate qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001404

has super-classes
cellular qualityc
has sub-classes
nucleatedc

nucleatedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002505

has super-classes
nucleate qualityc
has sub-classes
mononucleatec, multinucleatec

nucleic acid metabolic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0090304

has super-classes
nucleobase-containing compound metabolic processc
macromolecule metabolic processc
has sub-classes
DNA metabolic processc, RNA metabolic processc

nucleobase-containing compound biosynthetic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0034654

has super-classes
nucleobase-containing compound metabolic processc
heterocycle biosynthetic processc
aromatic compound biosynthetic processc
cellular nitrogen compound biosynthetic processc
organic cyclic compound biosynthetic processc
has sub-classes
RNA biosynthetic processc

nucleobase-containing compound metabolic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0006139

has super-classes
cellular aromatic compound metabolic processc
cellular nitrogen compound metabolic processc
primary metabolic processc
heterocycle metabolic processc
organic cyclic compound metabolic processc
has sub-classes
nucleic acid metabolic processc, nucleobase-containing compound biosynthetic processc

nucleoid area phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000344

has super-classes
nucleoid phenotypec
has sub-classes
altered nucleoid areac

nucleoid area variability phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000367

has super-classes
cell morphology variabilityc

nucleoid constriction during cell division phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000346

has super-classes
nucleoid phenotypec
has sub-classes
altered nucleoid constriction during cell divisionc, correlation between nucleoid and cell constriction phenotypec

nucleoid localizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000145

has super-classes
nucleoid phenotypec
has sub-classes
midcell nucleoid localizationc, polar nucleoid localizationc, quarter cell nucleoid localizationc

nucleoid number phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000043

has super-classes
nucleoid phenotypec
has sub-classes
altered fraction of cells with one nucleoidc, altered fraction of cells with two nucleoidsc, altered nucleoid number phenotypec, multiple nucleoidsc, single nucleoidc

nucleoid phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000150

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
genetic material phenotypec
has sub-classes
anucleoidc, in vitro nucleoid shapec, nucleoid area phenotypec, nucleoid constriction during cell division phenotypec, nucleoid localizationc, nucleoid number phenotypec, nucleoid spacingc

nucleoid spacingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000140

has super-classes
nucleoid phenotypec
has sub-classes
irregular nucleoid spacingc, regular nucleoid spacingc

nucleoside resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007358

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
altered resistance to a nucleosidec, not resistant to a nucleosidec, resistant to a nucleosidec

nutrient import phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007007

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
nutrient utilization phenotypec
has sub-classes
altered nutrient import phenotypec

nutrient utilization phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006022

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbial phenotypec
has sub-classes
altered nutrient utilizationc, carbon source utilization phenotypec, growth factor requirement phenotypec, iron source utilization phenotypec, nitrogen source utilization phenotypec, nutrient import phenotypec, phosphorus source utilization phenotypec, sulfur source utilization phenotypec, trace element utilization phenotypec

O2 effects on population growth phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000039

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
effect of non-nutrient environmental factors on population growth phenotypec
has sub-classes
aerobic population growth phenotypec, anaerobic population growth phenotypec, microaerophilic population growth phenotypec

obclavatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002213

has super-classes
concave 3-D shapec

obligate aerobec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000185

has super-classes
commonly used descriptorsc

obligate anaerobec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000184

has super-classes
commonly used descriptorsc

occurrencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000057

has super-classes
temporal distribution qualityc
has sub-classes
continuousc, decreased occurrencec, discontinuousc, increased occurrencec

octahedral capsidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005397

has super-classes
polyhedral shapec

offset qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002324

has super-classes
temporal distribution qualityc
has sub-classes
arrestedc

onset qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002325

has super-classes
temporal distribution qualityc
has sub-classes
delayedc, prematurec

opaque colonyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000110

has super-classes
colony opacity phenotypec

organic aromatic compound resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005343

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
altered organic aromatic compound resistancec, not resistant to organic aromatic compoundsc, resistant to organic aromatic compoundsc

organic cyclic antimicrobial agent resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007846

has super-classes
antimicrobial agent resistance phenotypec

organic cyclic compound biosynthetic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_1901362

has super-classes
organic cyclic compound metabolic processc
organic substance biosynthetic processc
has sub-classes
nucleobase-containing compound biosynthetic processc

organic cyclic compound metabolic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_1901360

has super-classes
organic substance metabolic processc
has sub-classes
nucleobase-containing compound metabolic processc, organic cyclic compound biosynthetic processc

organic heterocyclic compound resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005274

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
altered organic heterocyclic compound resistancec, not resistant to organic heterocyclic compoundc, resistant to organic heterocyclic compoundc

organic nitrogen source utilization phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007014

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
nitrogen source utilization phenotypec
has sub-classes
absence of organic nitrogen source utilizationc, altered organic nitrogen source utilizationc, presence of organic nitrogen source utilizationc

organic phosphorus source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007046

has super-classes
phosphorus source utilization phenotypec
has sub-classes
altered organic phosphorus source utilizationc

organic substance biosynthetic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_1901576

has super-classes
biosynthetic processc
organic substance metabolic processc
has sub-classes
macromolecule biosynthetic processc, organic cyclic compound biosynthetic processc

organic substance metabolic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0071704

has super-classes
metabolic processc
has sub-classes
macromolecule metabolic processc, organic cyclic compound metabolic processc, organic substance biosynthetic processc

organismal qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001995

has super-classes
physical object qualityc
has sub-classes
trophic qualityc, viabilityc

orientationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000133

has super-classes
positionc

origin-independent replicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005037

has super-classes
altered DNA replicationc

osmotaxis phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005361

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
taxis phenotypec
has sub-classes
absence of osmotaxisc, altered osmotaxisc, presence of osmotaxisc

osmotolerant growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005015

has super-classes
solute and water activity effects on population growth phenotypec

outer endospore membrane phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008010

has super-classes
endospore external encapsulating structure phenotypec
has sub-classes
absence of an outer endospore membranec, altered outer membranec, presence of an outer endospore membranec

outer membrane phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000461

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cell envelope morphology phenotypec
has sub-classes
absence of an outer membranec, presence of an outer membranec

outer membrane vesicles phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000202

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cell envelope morphology phenotypec
has sub-classes
absence of outer membrane vesiclesc, altered outer membrane vesiclesc, presence of outer membrane vesiclesc

over-initiation of DNA replicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000308

has super-classes
altered DNA replicationc

oxidase negativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006084

has super-classes
oxidase test phenotypec
has sub-classes
abolished oxidase activityc

oxidase positivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006085

has super-classes
oxidase test phenotypec

oxidase test phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000220

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
differential test phenotypec
has sub-classes
altered oxidase test resultc, oxidase negativec, oxidase positivec

papillated colonyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000244

has super-classes
colony form phenotypec

participates in multi-species biofilmc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000245

has super-classes
biofilm formation phenotypec

perforatec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002112

has super-classes
structure, cavitiesc

periplasmic flagellum/flagellac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000023

has super-classes
flagellum arrangement phenotypec

peritrichous flagellac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000082

has super-classes
flagellum arrangement phenotypec

permeabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000970

has super-classes
structurec
has sub-classes
impermeablec, permeablec

permeablec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000982

has super-classes
permeabilityc
has sub-classes
decreased permeabilityc, increased permeabilityc

persister cell phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007152

has super-classes
population growth phenotypec
has sub-classes
altered persister cell phenotypec

pesticidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_25944

has super-classes
applicationc
has sub-classes
antimicrobial agentc

pH effects on population growth phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005008

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
effect of non-nutrient environmental factors on population growth phenotypec
has sub-classes
absence of population growth at acidic pHc, acidophilec, alkaliphilec, altered effects of pH on population growthc, neutrophilec, presence of population growth at acidic pHc, presence of population growth at alkaline pHc

phenolic antimicrobial agent resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007474

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
altered resistance to phenolsc, not resistant to phenolsc, resistant to phenolsc

phenolic chemical resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007848

has super-classes
chemical resistance phenotypec

phosphatase activity phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005160

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
enzymatic activity phenotypec
has sub-classes
absence of phosphatase activityc, altered phosphatase activityc, presence of phosphatase activityc

phospholipase activity phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005000

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
enzymatic activity phenotypec
has sub-classes
absence of phospholipase activityc, altered phospholipase activityc, presence of phospholipase activityc

phosphorus source utilization phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007043

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
nutrient utilization phenotypec
has sub-classes
altered phosphorus source utilizationc, inorganic phosphorus source utilizationc, organic phosphorus source utilizationc

photosynthesis phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006008

has super-classes
phototrophic phenotypec

phototrophic phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007064

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
energy metabolism phenotypec
has sub-classes
photosynthesis phenotypec

physical object qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001241

Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles.
has super-classes
qualityc
has sub-classes
altered_physical_object_qualityc, cellular qualityc, decreased object qualityc, has number ofc, increased object qualityc, molecular qualityc, morphologyc, organismal qualityc, physical qualityc

physical qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001018

has super-classes
physical object qualityc
has sub-classes
mobilityc, positionc, temperaturec

physical quality of a processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002062

has super-classes
process qualityc
has sub-classes
durationc, ratec, sensitivity of a processc, temporal distribution qualityc

piezophilic growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005014

has super-classes
pressure effects on population growth phenotypec

pigmented colonyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000116

has super-classes
colony pigmentation phenotypec
has sub-classes
colony with diffusible pigmentc, colony with non-diffusible pigmentc

pilus morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000084

has super-classes
cell projection morphology phenotypec
has sub-classes
absence of pilusc, altered pilus phenotypec, presence of pilusc

plaque appearance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008047

plaque appearance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008058

has super-classes
plaque morphology phenotypec
has sub-classes
bull's eye plaque appearancec, clear plaque appearancec, turbid plaque appearancec

plaque morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008043

plaque morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008057

has super-classes
sensitive to bacteriophagec
has sub-classes
plaque appearance phenotypec, plaque size phenotypec

plaque size phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008044

plaque size phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008050

plaque size phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008059

has super-classes
plaque morphology phenotypec

plating morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000255

This term was made obsolete because it is redundant with OMP:0000100 ! colony morphology phenotype.

pleomorphic cell shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000132

has super-classes
cell shape phenotypec

plicate colony surfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000239

has super-classes
colony surface phenotypec

pointedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002258

has super-classes
sharpc

polar nucleoid localizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000147

has super-classes
nucleoid localizationc

polyether antimicrobial resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007800

This term and its children were deemed to be too granular. Instead, use one of the children of OMP:0000274 antimicrobial agent resistance phenotype and enter database identifier for A22 in the Annotation Extension field. OMP:0007876 resistant to an antimicrobial agent OMP:0007877 not resistant to an antimicrobial agent OMP:0007134 altered resistance to an antimicrobial agent OMP:0007878 increased resistance to an antimicrobial agent OMP:000 7879 decreased resistance to an antimicrobial agent OMP:0007880 abolished resistance to an antimicrobial agent

polyhedral shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005394

has super-classes
capsid morphology phenotypec
has sub-classes
dodecahedral capsid shapec, icosahedral capsid shapec, isometric capsidc, octahedral capsidc

population growth in high osmolarity phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007516

has super-classes
solute and water activity effects on population growth phenotypec
has sub-classes
absence of population growth in high osmolarityc, altered population growth in high osmolarityc, presence of population growth in high osmolarityc

population growth on defined medium phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007774

has super-classes
population growth phenotypec
has sub-classes
absence of population growth on defined mediumc, altered population growth on defined mediumc, presence of population growth on defined mediumc

population growth phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007167

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
is equivalent to
microbial phenotypec and (inheres_inop some reproductionc)
has super-classes
population phenotypec
biological process phenotypec
inheres_inop some reproductionc
has sub-classes
absence of population growthc, altered population growthc, asexual reproduction phenotypec, cell population growth phenotypec, chemical resistance phenotypec, drug-dependent population growth phenotypec, effect of non-nutrient environmental factors on population growth phenotypec, persister cell phenotypec, population growth on defined medium phenotypec, population growth rate phenotypec, population growth yield phenotypec, presence of population growthc, resistance to stress phenotypec, sexual reproduction phenotypec

population growth rate phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007156

has super-classes
population growth phenotypec
has sub-classes
altered population growth ratec

population growth yield phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007641

has super-classes
population growth phenotypec
has sub-classes
altered population growth yieldc

population morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007315

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
population phenotypec
has sub-classes
altered population morphologyc, colony morphology phenotypec, liquid culture morphology phenotypec

population phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007006

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbial phenotypec
has sub-classes
altered population phenotypec, cell population phenotypec, population growth phenotypec, population morphology phenotypec, population viability phenotypec, sporulation frequency phenotypec

population viability phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007456

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
population phenotypec
has sub-classes
cell population viability phenotypec, nonviable cell populationc

positionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000140

has super-classes
physical qualityc
has sub-classes
dispersedc, displacedc, orientationc, protrudingc, spatial patternc

post-injection defectc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007241

has super-classes
decreased sensitivity to bacteriophagec

prematurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000694

has super-classes
onset qualityc

presence of resistance to killing by hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005139

has super-classes
resistance to killing by host phenotypec

presence of a corec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008006

has super-classes
endospore core phenotypec

presence of a cortexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008026

has super-classes
endospore cortex phenotypec

presence of a septation indexc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007733

has super-classes
septation index phenotypec

presence of a single tailc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005390

has super-classes
presence of tailc

presence of acid phosphatase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005174

has super-classes
acid phosphatase activity phenotypec

presence of acid tolerance responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000379

has super-classes
acid tolerance response phenotypec

presence of acid-fast stainc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007298

has super-classes
acid-fast staining phenotypec

presence of actin cytoskeletonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005184

has super-classes
actin cytoskeleton phenotypec

presence of adhesionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005213

has super-classes
adhesion phenotypec

presence of adhesion to hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005208

has super-classes
adhesion to host phenotypec

presence of aerobic population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005253

has super-classes
aerobic population growth phenotypec

presence of aerobic respirationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007175

has super-classes
aerobic respiration phenotypec

presence of aerotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000049

is equivalent to
aerotaxis phenotypec and (has_qualityop some presentc)
has super-classes
aerotaxis phenotypec
has_qualityop some presentc
has sub-classes
presence of negative aerotaxisc, presence of positive aerotaxisc

presence of agar invasionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005326

has super-classes
agar invasion phenotypec

presence of akinete formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000006

is equivalent to
akinete formation phenotypec and (has_qualityop some presentc)
has super-classes
akinete formation phenotypec
presence of asexual sporulationc
has_qualityop some presentc

presence of alpha-1,3-mannosyltransferase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005199

has super-classes
alpha-1,3-mannosyltransferase activity phenotypec

presence of an attached lifestylec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007648

has super-classes
attached lifestyle phenotypec

presence of an endospore coatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008009

has super-classes
endospore coat phenotypec

presence of an endospore germ cell wallc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008003

has super-classes
endospore germ cell wall phenotypec

presence of an exosporiumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007231

has super-classes
endospore exosporium phenotypec

presence of an inner endospore membranec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008016

has super-classes
inner endospore membrane phenotypec

presence of an outer endospore membranec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008012

has super-classes
outer endospore membrane phenotypec

presence of an outer membranec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000462

has super-classes
outer membrane phenotypec

presence of an SOS responsec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005023

has super-classes
SOS response phenotypec

presence of anaerobic population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005190

has super-classes
anaerobic population growth phenotypec

presence of anaerobic respirationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007181

has super-classes
anaerobic respiration phenotypec
has sub-classes
anaerobic respiration with sulfate as the terminal acceptorc

presence of antimicrobial peptide productionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006179

has super-classes
antimicrobial peptide production phenotypec

presence of apoptosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007311

has super-classes
apoptosis phenotypec

presence of ascospore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007402

has super-classes
ascospore formation phenotypec

presence of asexual sporulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007143

has super-classes
asexual sporulation phenotypec
has sub-classes
presence of akinete formationc, presence of endospore formationc, presence of myxospore formationc

presence of binary fissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006166

has super-classes
binary fission phenotypec

presence of biofilm formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007907

has super-classes
biofilm formation phenotypec

presence of buddingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000008

has super-classes
budding phenotypec

presence of capsulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000204

When present, the capsule layer lies outside the cell wall and/or outer membrane.
has super-classes
capsule phenotypec

presence of cell area variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000323

has super-classes
presence of cell size variability within a cell populationc

presence of cell aspect ratio variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000339

has super-classes
presence of cell size variability within a cell populationc

presence of cell circularity variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000337

has super-classes
presence of cell size variability within a cell populationc

presence of cell diameter variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000320

has super-classes
presence of cell size variability within a cell populationc

presence of cell division ratio variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000340

has super-classes
cell population phenotypec

presence of cell fusionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005220

has super-classes
cell fusion phenotypec

presence of cell fusion during matingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005227

has super-classes
cell fusion during mating phenotypec

presence of cell growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007685

Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
has super-classes
cell growth phenotypec

presence of cell length variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000318

has super-classes
presence of cell size variability within a cell populationc

presence of cell lysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005338

has super-classes
cell lysis phenotypec

presence of cell perimeter length variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000329

has super-classes
presence of cell size variability within a cell populationc

presence of cell population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007919

has super-classes
cell population growth phenotypec

presence of cell population growth during nutrient limitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007962

has super-classes
cell population growth during nutrient limitation phenotypec

presence of cell separation after cell division during vegetative growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007787

has super-classes
presence of cellular process during vegetative growthc

presence of cell size variability within a cell populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007921

has super-classes
cell size variabilityc
has sub-classes
presence of cell area variabilityc, presence of cell aspect ratio variabilityc, presence of cell circularity variabilityc, presence of cell diameter variabilityc, presence of cell length variabilityc, presence of cell perimeter length variabilityc, presence of cell surface area variabilityc, presence of cell surface area-to-volume ratio variabilityc, presence of cell volume variabilityc

presence of cell surface area variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000327

has super-classes
presence of cell size variability within a cell populationc

presence of cell surface area-to-volume ratio variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000332

has super-classes
presence of cell size variability within a cell populationc

presence of cell volume variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000325

has super-classes
presence of cell size variability within a cell populationc

presence of cell wallc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005235

has super-classes
cell wall morphology phenotypec
has sub-classes
absence of chitin in cell wallc, presence of chitin in cell wallc

presence of cell-cell self recognitionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000385

has super-classes
cell-cell self recognition phenotypec

presence of cellular pigment accumulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007812

has super-classes
cellular pigment accumulation phenotypec
has sub-classes
presence of cellular pigment accumulation during vegetative growthc

presence of cellular pigment accumulation during vegetative growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007813

has super-classes
presence of cellular pigment accumulationc

presence of cellular process during vegetative growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007785

has super-classes
cellular process phenotype during vegetative growthc
has sub-classes
presence of cell separation after cell division during vegetative growthc

presence of cellular reactive oxygen speciesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007658

has super-classes
level of cellular reactive oxygen species phenotypec

presence of chemotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000046

has super-classes
chemotaxis phenotypec
has sub-classes
presence of negative chemotaxisc, presence of positive chemotaxisc

presence of chitin in cell wallc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007624

has super-classes
presence of cell wallc

presence of chromosome segregationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007600

has super-classes
chromosome segregation phenotypec

presence of colonization of a hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007253

has super-classes
colonization of a host phenotypec

presence of colonization of host tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005282

has super-classes
colonization of host tissue phenotypec
has sub-classes
presence of colonization of mouse tissuec, presence of colonization of rabbit tissuec

presence of colonization of mouse tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005296

has super-classes
presence of colonization of host tissuec
colonization of mouse tissuec

presence of colonization of rabbit tissuec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005310

has super-classes
presence of colonization of host tissuec
colonization of rabbit tissue phenotypec

presence of colonization of tissue in an immunocompromised hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005289

has super-classes
colonization of tissue in an immunocompromised host phenotypec

presence of colonization of tissue in an immunocompromised mousec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005303

has super-classes
colonization of tissue in an immunocompromised mouse phenotypec

presence of colonization of tissue in an immunocompromised rabbitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005317

has super-classes
colonization of tissue in an immunocompromised rabbit phenotypec

presence of conjugationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007415

has super-classes
conjugation phenotypec

presence of contractile tailc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005388

has super-classes
presence of tailc

presence of diazonium blue B stainingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007295

has super-classes
diazonium blue B staining phenotypec

presence of dinitrogen utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007031

has super-classes
dinitrogen utilization phenotypec

presence of DNA breaksc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007603

has super-classes
DNA break phenotypec
has sub-classes
presence of double-strand DNA breaksc, presence of single-strand DNA breaksc

presence of double-strand DNA breaksc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007610

has super-classes
presence of DNA breaksc

presence of drug-dependent population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007265

has super-classes
drug-dependent population growth phenotypec

presence of endocytosisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005267

has super-classes
endocytosis phenotypec

presence of endomembrane systemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005272

has super-classes
endomembrane system phenotypec

presence of endospore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000017

is equivalent to
endospore formation phenotypec and (has_qualityop some presentc)
has super-classes
endospore formation phenotypec
presence of asexual sporulationc
has_qualityop some presentc

presence of enzymatic activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007280

has super-classes
enzymatic activity phenotypec

presence of ferric reductase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005153

has super-classes
ferric reductase activity phenotypec

presence of filamentous growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005248

has super-classes
filamentous growth phenotypec

presence of flagellumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000029

has super-classes
flagellum morphology phenotypec

presence of flocculationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007463

has super-classes
flocculation phenotypec

presence of fosfomycin resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007856

has super-classes
fosfomycin resistance phenotypec

presence of gene silencingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005067

has super-classes
gene silencing phenotypec

presence of germ tubec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007842

has super-classes
germ tube morphology phenotypec

presence of golgi apparatusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005240

has super-classes
golgi apparatus phenotypec

presence of growth at alkaline pHc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007947

This term was made obsolete because it was redundant with OMP:0007771. The two terms weren't merged because the redundancy of OMP:0007947 was discovered after one day and was never committed to a release.

presence of haploid fruitingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007543

has super-classes
haploid fruiting phenotypec

presence of heme utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006163

has super-classes
heme utilization phenotypec

presence of hemolysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005117

has super-classes
hemolysis testc

presence of heterocystsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000010

has super-classes
heterocyst formation phenotypec

presence of Holliday junction structuresc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007618

has super-classes
Holliday junction structure phenotypec

presence of homologous recombinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005051

has super-classes
homologous recombination phenotypec
has sub-classes
presence of RecA-mediated homologous recombinationc, presence of lambda Red-mediated recombinationc

presence of inorganic carbon source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007012

has super-classes
carbon source utilization phenotypec

presence of inorganic nitrogen source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007306

has super-classes
inorganic nitrogen source utilization phenotypec

presence of inorganic sulfur utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007057

has super-classes
sulfur source utilization phenotypec

presence of internalization by macrophagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000370

has super-classes
internalization by macrophage phenotypec

presence of laccase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007286

has super-classes
laccase activity phenotypec

presence of lambda Red-mediated recombinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007210

has super-classes
presence of homologous recombinationc

presence of lethalityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007395

has super-classes
lethality phenotypec
has sub-classes
presence of lethality in an amoeba hostc, presence of lethality in an invertebrate hostc, presence of lethality in immunocompromised micec, presence of lethality in micec

presence of lethality in an amoeba hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007528

has super-classes
presence of lethalityc

presence of lethality in an invertebrate hostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007524

has super-classes
presence of lethalityc

presence of lethality in immunocompromised micec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007443

has super-classes
presence of lethalityc

presence of lethality in micec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007442

has super-classes
presence of lethalityc

presence of long tailc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005387

has super-classes
presence of tailc

presence of matingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005350

has super-classes
mating phenotypec

presence of meiotic nuclear divisionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007562

has super-classes
meiotic nuclear division phenotypec

presence of microaerophilic population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005255

has super-classes
microaerophilic population growth phenotypec

presence of microbial cell viabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007392

has super-classes
microbial cell viability phenotypec
has sub-classes
viable sporec, viable vegetative cellc

presence of microtubule cytoskeletonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007762

has super-classes
microtubule cytoskeleton phenotypec

presence of mitotic recombinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005073

has super-classes
mitotic recombination phenotypec

presence of motilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000005

is equivalent to
motility phenotypec and (has_qualityop some presentc)
has super-classes
motility phenotypec
has_qualityop some presentc
has sub-classes
presence of motility by glidingc, presence of motility by swarmingc, presence of motility by swimmingc, presence of motility by twitchingc

presence of motility by glidingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000112

is equivalent to
presence of motilityc and (inheres_inop some cell glidingc)
has super-classes
presence of motilityc
inheres_inop some cell glidingc

presence of motility by swarmingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000067

is equivalent to
presence of motilityc and (inheres_inop some bacterial-type flagellum-dependent swarming motilityc)
has super-classes
presence of motilityc
inheres_inop some bacterial-type flagellum-dependent swarming motilityc

presence of motility by swimmingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000111

In Bacteria and Archaea, motility by swimming is typically powered by a flagellum or flagella. In Protists, swimming motility is typically powered by cilia or flagella.
is equivalent to
presence of motilityc and (inheres_inop some cell swimmingc)
has super-classes
presence of motilityc
inheres_inop some cell swimmingc

presence of motility by twitchingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000113

Twitching motility of bacteria typically involves type IV pili.
is equivalent to
presence of motilityc and (inheres_inop some type IV pilus-dependent motilityc)
has super-classes
presence of motilityc
inheres_inop some type IV pilus-dependent motilityc

presence of mucoid coloniesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000109

has super-classes
mucoid colony surface phenotypec

presence of multiple fissionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006173

has super-classes
multiple fission phenotypec
has sub-classes
presence of schizogenyc

presence of multiple tailsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005391

has super-classes
presence of tailc

presence of myxospore formationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000020

is equivalent to
myxospore formation phenotypec and (has_qualityop some presentc)
has super-classes
myxospore formation phenotypec
presence of asexual sporulationc
has_qualityop some presentc

presence of nanotubesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000246

has super-classes
nanotube phenotypec

presence of natural competencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008038

has super-classes
natural competence phenotypec

presence of negative aerotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000057

has super-classes
presence of aerotaxisc

presence of negative chemotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000053

has super-classes
presence of chemotaxisc

presence of negative osmotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005365

has super-classes
presence of osmotaxisc

presence of negative supercoilingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000295

has super-classes
DNA supercoiling phenotypec

presence of non-contractile tailc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005389

has super-classes
presence of tailc

presence of normal tailc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005385

has super-classes
presence of tailc

presence of nucleoid area variabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000342

has super-classes
cell population phenotypec

presence of organic carbon source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006024

has super-classes
carbon source utilization phenotypec

presence of organic nitrogen source utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007969

has super-classes
organic nitrogen source utilization phenotypec

presence of organic sulfur utilizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007060

has super-classes
sulfur source utilization phenotypec

presence of osmotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005362

has super-classes
osmotaxis phenotypec
has sub-classes
presence of negative osmotaxisc, presence of positive osmotaxisc

presence of outer membrane vesiclesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006107

has super-classes
outer membrane vesicles phenotypec

presence of phosphatase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005165

has super-classes
phosphatase activity phenotypec

presence of phospholipase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005026

has super-classes
phospholipase activity phenotypec

presence of pilusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000034

Fimbria (plural, fimbriae) is a common synonym for pilus (plural, pili).
has super-classes
pilus morphology phenotypec

presence of population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007595

has super-classes
population growth phenotypec
has sub-classes
presence of vegetative cell population growthc

presence of population growth at acidic pHc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007945

has super-classes
pH effects on population growth phenotypec

presence of population growth at alkaline pHc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007771

has super-classes
pH effects on population growth phenotypec

presence of population growth at high temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007950

has super-classes
temperature effects on population growth phenotypec

presence of population growth at low temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007956

has super-classes
temperature effects on population growth phenotypec

presence of population growth in high osmolarityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007517

has super-classes
population growth in high osmolarity phenotypec

presence of population growth on defined mediumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007773

has super-classes
population growth on defined medium phenotypec

presence of positive aerotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000056

has super-classes
presence of aerotaxisc

presence of positive chemotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000052

has super-classes
presence of chemotaxisc

presence of positive osmotaxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005364

has super-classes
presence of osmotaxisc

presence of positive supercoilingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000296

has super-classes
DNA supercoiling phenotypec

presence of protein kinase A activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005159

has super-classes
protein kinase A activity phenotypec

presence of protein localizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005334

has super-classes
protein localization phenotypec

presence of quorum sensingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000060

has super-classes
quorum sensing phenotypec

presence of RecA-mediated homologous recombinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007209

has super-classes
presence of homologous recombinationc

presence of resistance to A22c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007870

This term and was deemed to be too granular. In its place, use OMP:0007876 resistant to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field.

presence of resistance to bicyclomycinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007863

presence of resistance to cold shockc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007580

has super-classes
resistance to cold shock phenotypec

presence of resistance to heat shockc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007583

has super-classes
resistance to heat shock phenotypec

presence of resistance to nutrient limitationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007933

has super-classes
resistance to nutrient limitation stress phenotypec

presence of resistance to oxidative stressc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007570

has super-classes
resistance to oxidative stress phenotypec

presence of resistance to UV-A radiationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007198

has super-classes
presence of UV-radiation resistancec

presence of resistance to UV-B radiationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007199

has super-classes
presence of UV-radiation resistancec

presence of resistance to UV-C radiationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007200

has super-classes
presence of UV-radiation resistancec

presence of schizogenyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007141

has super-classes
presence of multiple fissionc
schizogeny phenotypec

presence of sexual reproductionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007439

has super-classes
sexual reproduction phenotypec
has sub-classes
presence of sexual sporulationc

presence of sexual sporulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007433

has super-classes
sexual sporulation phenotypec
presence of sexual reproductionc

presence of short tailc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005384

has super-classes
presence of tailc

presence of single-strand DNA breaksc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007609

has super-classes
presence of DNA breaksc

presence of site-specific recombinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005058

has super-classes
site-specific recombination phenotypec

presence of stress-induced mutagenesisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005032

has super-classes
stress-induced mutagenesis phenotypec

presence of superoxide dismutase activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005171

has super-classes
superoxide dismutase activity phenotypec

presence of survival in macrophagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007452

has super-classes
survival in macrophage phenotypec

presence of tailc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005383

has super-classes
tail morphology phenotypec
has sub-classes
presence of a single tailc, presence of contractile tailc, presence of long tailc, presence of multiple tailsc, presence of non-contractile tailc, presence of normal tailc, presence of short tailc

presence of titan cellsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007507

has super-classes
titan cell morphology phenotypec

presence of transcription of gene or operonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000390

has super-classes
transcription phenotypec

presence of transportc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007668

has super-classes
transport phenotypec

presence of transporter activityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007676

has super-classes
transporter activity phenotypec

presence of transposable element transpositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006015

has super-classes
transposable element transposition phenotypec

presence of UV-radiation resistancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007282

has super-classes
resistance to UV radiation phenotypec
has sub-classes
presence of resistance to UV-A radiationc, presence of resistance to UV-B radiationc, presence of resistance to UV-C radiationc

presence of vegetative cell growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007692

Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
has super-classes
vegetative cell growth phenotypec

presence of vegetative cell lysisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007742

has super-classes
vegetative cell lysis phenotypec

presence of vegetative cell population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007793

has super-classes
presence of population growthc

presence of vegetative cell population growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007796

has super-classes
vegetative cell population growth phenotypec

presence of virulencec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007284

has super-classes
virulence phenotypec

presentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000467

has super-classes
amountc

pressure effects on population growth phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005012

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
effect of non-nutrient environmental factors on population growth phenotypec
has sub-classes
piezophilic growthc

primary metabolic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044238

has super-classes
metabolic processc
has sub-classes
nucleobase-containing compound metabolic processc, protein metabolic processc

process qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001236

See comments of relational quality of a physical entity.
has super-classes
qualityc
has sub-classes
altered_process_qualityc, decreased process qualityc, extra or missing processual partsc, increased process qualityc, physical quality of a processc

protein activity phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000269

This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. During OMP call on 2016-01-27 we decided to delete the term OMP:0000269 ! protein activity phenotype because when observing a phenotype we don't know what kind of molecule is doing something, just that a particular activity is absent, present, or altered.

protein kinase A activity phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005154

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
enzymatic activity phenotypec
has sub-classes
absence of protein kinase A activityc, altered protein kinase A activityc, presence of protein kinase A activityc

protein localization phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005332

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cellular component phenotypec
has sub-classes
absence of protein localizationc, altered protein localizationc, presence of protein localizationc

protein metabolic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0019538

has super-classes
macromolecule metabolic processc
primary metabolic processc
has sub-classes
cellular protein metabolic processc

protein secretion phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007346

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
biological process phenotypec
has sub-classes
altered protein secretionc

prototrophicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000423

has super-classes
trophic qualityc

protrudingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001598

has super-classes
positionc

pseudo tail morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005393

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
virion morphology phenotypec

psychrophilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005007

has super-classes
temperature effects on population growth phenotypec

psychrotrophc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005006

has super-classes
temperature effects on population growth phenotypec

pteridine resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007065

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
altered pteridine resistancec, not resistant to pteridinec, resistant to pteridinec

pulvinate colony elevationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000163

has super-classes
colony elevation phenotypec

punctiform colonyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000240

has super-classes
colony form phenotypec

purine requirementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007039

has super-classes
requires growth factor(s)c
has sub-classes
altered purine requirementc

pyrimidine requirementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007379

has super-classes
requires growth factor(s)c
has sub-classes
altered pyrimidine requirementc

qualitativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000068

TODO: define this or obsolete it and move children somewhere else.
has super-classes
qualityc
has sub-classes
altered_relative_toc, amountc, deviation(from_normal)c

qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000001

has sub-classes
physical object qualityc, process qualityc, qualitativec
is in domain of
decreased_in_magnitude_relative_toop, different_in_magnitude_relative_toop, directly_associated_withop, increased_in_magnitude_relative_toop, inversely_associated_withop, similar_in_magnitude_relative_toop
is in range of
decreased_in_magnitude_relative_toop, different_in_magnitude_relative_toop, directly_associated_withop, has_dividend_qualityop, has_divisor_qualityop, has_ratio_qualityop, increased_in_magnitude_relative_toop, inversely_associated_withop, similar_in_magnitude_relative_toop

quality (Interim)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007187

quarter cell nucleoid localizationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000148

has super-classes
nucleoid localizationc

quaternary ammonium salts antimicrobial agent resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007481

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
altered resistance to quaternary ammonium salt antimicrobial agentc, not resistant to quaternary ammonium salt antimicrobial agentc, resistant to quaternary ammonium salt antimicrobial agentc

quick-stop DNA replicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005035

has super-classes
altered DNA replicationc

quinolone resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006029

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Quinolones are a class of quinolines, which are aromatic heterocyclic compounds that contain a benzene ring ortho fused to carbons 2 and 3 of a pyridine ring.
has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
altered quinolone resistancec, not resistant to quinolonec, resistant to quinolonec

quinone resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007356

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
antimicrobial agent resistance phenotypec

quorum sensing phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000069

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbial communication phenotypec
has sub-classes
absence of quorum sensingc, altered quorum sensing phenotypec, presence of quorum sensingc

raised colony elevationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000161

has super-classes
colony elevation phenotypec

ratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000161

has super-classes
physical quality of a processc
has sub-classes
decreased ratec, frequencyc, increased ratec

red colony on MacConkey agarc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000258

This term was made obsolete because 'red colony on MacConkey agar' was determined to be evidence for a phenotype, i.e. utilization of a particular sugar, rather than the phenotype itself.

regular nucleoid spacingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000141

has super-classes
nucleoid spacingc

regular spatial patternc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000440

has super-classes
spatial patternc

regulation of biological processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0050789

has super-classes
biological regulationc
regulatesop some biological_processc
has sub-classes
negative regulation of biological processc, regulation of metabolic processc

regulation of gene expressionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0010468

has super-classes
regulation of macromolecule metabolic processc
regulatesop some gene expressionc
has sub-classes
negative regulation of gene expressionc

regulation of macromolecule metabolic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0060255

has super-classes
regulation of metabolic processc
regulatesop some macromolecule metabolic processc
has sub-classes
negative regulation of macromolecule metabolic processc, regulation of gene expressionc

regulation of metabolic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0019222

has super-classes
regulation of biological processc
regulatesop some metabolic processc
has sub-classes
negative regulation of metabolic processc, regulation of macromolecule metabolic processc

regulation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007161

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbial phenotypec
has sub-classes
gene expression regulation phenotypec

reproductionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0000003

has super-classes
biological_processc
has sub-classes
asexual reproductionc

requires growth factor(s)c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007069

has super-classes
growth factor requirement phenotypec
has sub-classes
amino acid requirementc, purine requirementc, pyrimidine requirementc, vitamin/enzyme cofactor requirementc

resistance to alkaline pH stress phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007574

has super-classes
resistance to stress phenotypec
has sub-classes
altered resistance to alkaline pH stress phenotypec

resistance to chemical stress phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007577

has super-classes
resistance to stress phenotypec
has sub-classes
altered resistance to chemical stressc

resistance to cold shock phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007578

has super-classes
resistance to stress phenotypec
has sub-classes
absence of resistance to cold shockc, altered resistance to cold shockc, presence of resistance to cold shockc

resistance to dessication stress phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007575

has super-classes
resistance to stress phenotypec
has sub-classes
altered resistance to dessication stress phenotypec

resistance to freeze-thaw stress phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007593

has super-classes
resistance to stress phenotypec
has sub-classes
altered resistance to freeze/thaw stressc

resistance to gamma-ray radiation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005085

has super-classes
resistance to radiation stress phenotypec
has sub-classes
altered resistance to gamma-ray radiationc

resistance to heat shock phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007579

has super-classes
resistance to stress phenotypec
has sub-classes
absence of resistance to heat shockc, altered resistance to heatc, presence of resistance to heat shockc

resistance to killing by host phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005111

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbe-host interaction phenotypec
has sub-classes
absence of resistance to killing by hostc, altered resistance to killing by hostc, presence of resistance to killing by hostc

resistance to nutrient limitation stress phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007932

has super-classes
resistance to stress phenotypec
has sub-classes
absence of resistance to nutrient limitationc, altered resistance to nutrient limitationc, presence of resistance to nutrient limitationc

resistance to oxidative stress phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007569

has super-classes
resistance to stress phenotypec
has sub-classes
absence of resistance to oxidative stressc, altered resistance to oxidative stressc, presence of resistance to oxidative stressc

resistance to pH shock phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007573

has super-classes
resistance to stress phenotypec
has sub-classes
altered resistance to acidic pH stress phenotypec

resistance to radiation stress phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007576

has super-classes
resistance to stress phenotypec
has sub-classes
altered resistance to radiation stressc, resistance to UV radiation phenotypec, resistance to gamma-ray radiation phenotypec, resistance to x-ray radiationc

resistance to stress phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007568

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. Use a descendant of this term if you have assayed growth of cells exposed to a stress in culture. If you have assayed the response to a stress at the subcellular or molecular level, consider annotating to one of the descendants of 'response to stress phenotype' (OMP:0000173).
has super-classes
population growth phenotypec
has sub-classes
altered resistance to stressc, resistance to alkaline pH stress phenotypec, resistance to chemical stress phenotypec, resistance to cold shock phenotypec, resistance to dessication stress phenotypec, resistance to freeze-thaw stress phenotypec, resistance to heat shock phenotypec, resistance to nutrient limitation stress phenotypec, resistance to oxidative stress phenotypec, resistance to pH shock phenotypec, resistance to radiation stress phenotypec

resistance to UV radiation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005084

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
resistance to radiation stress phenotypec
has sub-classes
absence of UV radiation resistancec, altered UV-radiation resistancec, presence of UV-radiation resistancec

resistance to x-ray radiationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005086

has super-classes
resistance to radiation stress phenotypec
has sub-classes
altered resistance to x-ray radiationc

resistant to a chelatorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007909

has super-classes
chelator resistance phenotypec

resistant to a chemicalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007247

has super-classes
chemical resistance phenotypec
has sub-classes
resistant to a metalc

resistant to a metalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007884

has super-classes
resistant to a chemicalc
metal resistance phenotypec

resistant to a nucleosidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007359

has super-classes
nucleoside resistance phenotypec

resistant to a surfactantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007892

has super-classes
surfactant resistance phenotypec

resistant to a urea derivativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007534

resistant to alkaloidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007136

has super-classes
alkaloid chemical resistance phenotypec

resistant to alkylating agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007373

has super-classes
alkylating agent resistance phenotypec

resistant to aminoglycosidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006060

has super-classes
aminoglycoside antimicrobial agent resistance phenotypec

resistant to aminopyrimidinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000435

has super-classes
aminopyrimidine resistance phenotypec

resistant to ampicillinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000437

This term was obsoleted in response to our decision to not have precomposed terms for individual antimicrobial compounds. Instead, when possible, terms will be made for structural classes of antimicrobial compounds, for example 'resistant to beta-lactam', and the particular antimicrobial compound tested will be annotated by putting its CHEBI ID into the annotation extension column. In cases where a natural grouping doesn't exist, the user should use "OMP:0007876 resistant to an antimicrobial agent" and put the CHEBI ID (or other identifier) into the annotation extension column.

resistant to an acridinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007366

has super-classes
acridine antimicrobial agent resistance phenotypec

resistant to an antimicrobial agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007876

has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
resistant to beta-lactamc

resistant to an epoxidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007496

has super-classes
epoxide resistance phenotypec

resistant to azolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006055

has super-classes
azole antimicrobial agent resistance phenotypec

resistant to bacteriocinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006051

has super-classes
bacteriocin resistance phenotypec

resistant to benzamidesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007381

has super-classes
benzamides resistance phenotypec

resistant to beta-lactamc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006047

has super-classes
beta-lactam resistance phenotypec
resistant to an antimicrobial agentc

resistant to bile acidsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007899

has super-classes
bile acids resistance phenotypec

resistant to caffeinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000457

has super-classes
caffeine resistance phenotypec

resistant to chloramphenicolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006070

has super-classes
chloramphenicol resistance phenotypec

resistant to host defense peptidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007171

has super-classes
host defense peptides resistance phenotypec

resistant to lantibioticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006073

has super-classes
lantibiotic resistance phenotypec

resistant to macrolidec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006039

has super-classes
macrolide resistance phenotypec

resistant to mitomycinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007650

has super-classes
mitomycin resistance phenotypec

resistant to nitrofuranc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007822

has super-classes
nitrofuran resistance phenotypec

resistant to organic aromatic compoundsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005349

has super-classes
organic aromatic compound resistance phenotypec

resistant to organic heterocyclic compoundc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005280

has super-classes
organic heterocyclic compound resistance phenotypec

resistant to penicillinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000445

This term was obsoleted in response to our decision to not have precomposed terms for individual antimicrobial compounds. Instead, terms will be made for structural classes of antimicrobial compounds, for example 'resistant to beta-lactam', and the particular antimicrobial compound tested will be annotated by putting its CHEBI ID into column 16.

resistant to phenolsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007475

has super-classes
phenolic antimicrobial agent resistance phenotypec

resistant to pteridinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006076

has super-classes
pteridine resistance phenotypec

resistant to quaternary ammonium salt antimicrobial agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007482

has super-classes
quaternary ammonium salts antimicrobial agent resistance phenotypec

resistant to quinolonec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006043

has super-classes
quinolone resistance phenotypec

resistant to rifamycinc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007218

has super-classes
rifamycin resistance phenotypec

resistant to sulfonamide antimicrobial agentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007829

has super-classes
sulfonamide antimicrobial agent resistance phenotypec

resistant to tetracyclinec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006065

has super-classes
tetracycline resistance phenotypec

respiration phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007112

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
energy metabolism phenotypec
has sub-classes
aerobic respiration phenotypec, anaerobic respiration phenotypec

response to acid pH stress phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005040

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
response to stress phenotypec

response to alkaline pH stress phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005041

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
response to stress phenotypec

response to chemicalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0042221

Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
has super-classes
response to stimulusc
has sub-classes
chemotaxisc

response to chemical stimulus phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000172

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
response to stress phenotypec

response to dessication stress phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005080

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
response to stress phenotypec

response to external stimulusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0009605

Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
has super-classes
response to stimulusc
has sub-classes
taxisc

response to freeze/thaw stress phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005039

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
response to stress phenotypec

response to ionizing radiation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005083

has super-classes
response to radiation stress phenotypec

response to oxidative stress phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005038

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
response to stress phenotypec

response to radiation stress phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005081

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
response to stress phenotypec
has sub-classes
altered response to radiation stressc, response to ionizing radiation phenotypec

response to SDS-EDTA stress phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005112

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
response to stress phenotypec

response to starvation stress phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005099

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
response to stress phenotypec

response to stimulusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0050896

Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
has super-classes
biological_processc
has sub-classes
response to chemicalc, response to external stimulusc

response to stress phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000173

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
biological process phenotypec
has sub-classes
acid tolerance response phenotypec, altered response to stress phenotypec, response to SDS-EDTA stress phenotypec, response to acid pH stress phenotypec, response to alkaline pH stress phenotypec, response to chemical stimulus phenotypec, response to dessication stress phenotypec, response to freeze/thaw stress phenotypec, response to oxidative stress phenotypec, response to radiation stress phenotypec, response to starvation stress phenotypec, response to thermotolerance stress phenotypec

response to thermotolerance stress phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005082

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
response to stress phenotypec

rhizoid colonyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000168

has super-classes
colony form phenotypec

rifamycin resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007215

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
altered rifamycin resistancec, not resistant to rifamycinc, resistant to rifamycinc

RNA biosynthetic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0032774

has super-classes
macromolecule biosynthetic processc
RNA metabolic processc
nucleobase-containing compound biosynthetic processc
has sub-classes
transcription, DNA-templatedc

RNA metabolic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0016070

has super-classes
cellular macromolecule metabolic processc
nucleic acid metabolic processc
has sub-classes
RNA biosynthetic processc

rod-shaped cellsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000076

has super-classes
cylindrical cell shapec

rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_50906

has sub-classes
applicationc, biological rolec

roughc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000700

has super-classes
texturec

rough colony surfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000228

has super-classes
colony surface phenotypec

rugose colony surfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000230

has super-classes
colony surface phenotypec

sarcinac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000120

has super-classes
cell arrangement phenotypec

schizogeny phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007140

has super-classes
multiple fission phenotypec
has sub-classes
absence of schizogenyc, altered schizogenyc, presence of schizogenyc

secondary metabolite production phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006000

has super-classes
small molecule biosynthesis phenotypec
has sub-classes
antimicrobial peptide production phenotypec

sectored colonyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000243

has super-classes
colony form phenotypec

sensitive to bacteriophagec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007238

has super-classes
bacteriophage sensitivity phenotypec
has sub-classes
altered plaque morphology phenotypec, plaque morphology phenotypec

sensitivity of a processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001457

has super-classes
physical quality of a processc
has sub-classes
decreased sensitivity of a processc, increased sensitivity of a processc

septation following abnormal chromosome segregation during vegetative growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007781

has super-classes
absence of microbial vegetative cell viabilityc
has sub-classes
cut cellc

septation index phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007732

has super-classes
cell population phenotypec
has sub-classes
altered septation indexc, presence of a septation indexc

septation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007149

has super-classes
cytokinesis phenotypec
has sub-classes
altered septationc

serotype phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000207

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbial phenotypec

sexual reproduction phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007406

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
population growth phenotypec
has sub-classes
absence of sexual reproductionc, altered sexual reproductionc, mating efficiency phenotypec, mating phenotypec, presence of sexual reproductionc, sexual sporulation phenotypec

sexual sporulation frequencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005377

has super-classes
sporulation frequency phenotypec
has sub-classes
altered sexual sporulation frequencyc

sexual sporulation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007405

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
sporulation phenotypec
sexual reproduction phenotypec
has sub-classes
absence of sexual sporulationc, altered sexual sporulationc, ascospore formation phenotypec, presence of sexual sporulationc

shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000052

Shapes are invariant on size transformations. Shapes can be subdivided into 2D and 3D shapes, We can also make a distinction between shapes of complete self-connected objects, and shapes of parts of objects.
has super-classes
morphologyc
has sub-classes
2-D shapec, 3-D shapec, bentc, branchinessc, concavityc, curvaturec, sharpnessc, sigmoidc, splitc, stubbyc, surface feature shapec

sharpc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001419

has super-classes
sharpnessc
has sub-classes
pointedc

sharpnessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000944

has super-classes
shapec
has sub-classes
sharpc

sheathedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000127

has super-classes
cell arrangement phenotypec

sigmoidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001878

has super-classes
shapec

single nucleoidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000143

has super-classes
nucleoid number phenotypec

single-organism biosynthetic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044711

has super-classes
biosynthetic processc
single-organism metabolic processc
has sub-classes
cell cycle DNA replicationc

single-organism cellular processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044763

has super-classes
cellular processc
single-organism processc
has sub-classes
cell cycle processc, cellular component movementc, cellular developmental processc, chromosome segregationc, gene silencingc, transpositionc

single-organism developmental processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044767

has super-classes
developmental processc
single-organism processc
has sub-classes
cellular developmental processc, sporulationc

single-organism metabolic processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044710

has super-classes
metabolic processc
single-organism processc
has sub-classes
single-organism biosynthetic processc

single-organism processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0044699

has super-classes
biological_processc
has sub-classes
single-organism cellular processc, single-organism developmental processc, single-organism metabolic processc

singlet nucleoidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000153

has super-classes
in vitro nucleoid shapec

site-specific recombination phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005043

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
genetic material phenotypec
has sub-classes
absence of site-specific recombinationc, altered site-specific recombinationc, presence of site-specific recombinationc

sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000117

has super-classes
morphologyc
has sub-classes
1-D extentc, 3-D extentc, decreased sizec, increased sizec

slow-stop DNA replicationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005036

has super-classes
altered DNA replicationc

small molecule biosynthesis phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000310

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
biosynthetic phenotypec
has sub-classes
amino acid biosynthesis phenotypec, secondary metabolite production phenotypec

smoothc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000701

has super-classes
texturec

smooth colony surfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000212

has super-classes
colony surface phenotypec

snowman-shapedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002346

has super-classes
concave 3-D shapec

solute and water activity effects on population growth phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005013

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
effect of non-nutrient environmental factors on population growth phenotypec
has sub-classes
halophilic growthc, osmotolerant growthc, population growth in high osmolarity phenotypec

SOS response phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005017

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
gene expression phenotypec
has sub-classes
absence of an SOS responsec, altered SOS response phenotypec, presence of an SOS responsec

spatial patternc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000060

has super-classes
positionc
has sub-classes
irregular spatial patternc, regular spatial patternc

sphericalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001499

has super-classes
spheroidc
has_cross_sectionop some circularc

spherical akinetec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000134

has super-classes
akinete morphology phenotypec

spheroidc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001865

has super-classes
convex 3-D shapec
has sub-classes
sphericalc

spheroid cell shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007100

has super-classes
cell shape phenotypec
has sub-classes
coccusc

spindle colonyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000169

has super-classes
colony form phenotypec

spiral cell shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000086

has super-classes
cell shape phenotypec
has sub-classes
spirillumc, spirochetec, vibrioc

spirillumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000124

has super-classes
spiral cell shapec

spirochetec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000125

has super-classes
spiral cell shapec

splitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001786

has super-classes
shapec

spore germinationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0009847

has super-classes
developmental processc

spore germination phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000095

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
cell development phenotypec and (inheres_inop some spore germinationc)
has super-classes
cell development phenotypec
inheres_inop some spore germinationc
has sub-classes
altered spore germinationc

spore morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008000

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cell morphology phenotypec
has sub-classes
akinete morphology phenotypec, altered spore morphologyc, ascospore morphology phenotypec, endospore morphology phenotypec

spore viability phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007835

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbial cell viability phenotypec
has sub-classes
altered spore viabilityc, nonviable sporec, viable sporec

sporulationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0043934

has super-classes
single-organism developmental processc
has sub-classes
asexual sporulationc, sporulation resulting in formation of a cellular sporec

sporulation frequency phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005373

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
sporulation phenotypec
population phenotypec
has sub-classes
sexual sporulation frequencyc

sporulation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000091

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
cell development phenotypec and (inheres_inop some sporulationc)
has super-classes
cell development phenotypec
inheres_inop some sporulationc
has sub-classes
asexual sporulation phenotypec, sexual sporulation phenotypec, sporulation frequency phenotypec

sporulation resulting in formation of a cellular sporec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0030435

Note that the synonym 'spore differentiation', like the term name and definition, refers to differentiation into a spore rather than any subsequent developmental changes that a spore may undergo.
has super-classes
cell differentiationc
sporulationc
anatomical structure formation involved in morphogenesisc
has sub-classes
asexual sporulation resulting in formation of a cellular sporec

stalked cell shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000128

has super-classes
cell shape phenotypec
has sub-classes
altered cell stalkc

staphylococcusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000121

has super-classes
cell arrangement phenotypec

star-shaped cell shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000130

has super-classes
cell shape phenotypec

streptobacillusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000122

has super-classes
cell arrangement phenotypec

streptococcusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000118

has super-classes
cell arrangement phenotypec

stress-induced mutagenesis phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005027

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
genetic material phenotypec
has sub-classes
absence of stress-induced mutagenesisc, altered stress-induced mutagenesisc, presence of stress-induced mutagenesisc

structurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000141

has super-classes
morphologyc
has sub-classes
attachment qualityc, complete structurec, constrictedc, delaminatedc, fused withc, incomplete structurec, permeabilityc, structure, cavitiesc, tangledc, unfused fromc, wholenessc

structure, cavitiesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002014

has super-classes
structurec
has sub-classes
imperforatec, perforatec

stubbyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001643

has super-classes
shapec

stubby vegetative cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007756

has super-classes
altered vegetative cell morphologyc

subcellular component phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007750

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cellular physical quality phenotypec
has sub-classes
altered subcellular component phenotypec, cytoskeleton phenotypec

subcellular component phenotype during vegetative growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007766

has super-classes
cellular physical quality phenotype during vegetative growthc
has sub-classes
altered subcellular component phenotype during vegetative growthc

sulfide (H2S) oxidationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007114

has super-classes
chemolithotrophicc

sulfonamide antimicrobial agent resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007828

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
altered resistance to a sulfonamide antimicrobial agentc, not resistant to a sulfonamide antimicrobial agentc, resistant to sulfonamide antimicrobial agentc

sulfur source utilization phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007042

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
nutrient utilization phenotypec
has sub-classes
absence of inorganic sulfur utilizationc, absence of organic sulfur utilizationc, altered sulfur source utilization phenotypec, presence of inorganic sulfur utilizationc, presence of organic sulfur utilizationc

superellipticc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002318

has super-classes
2-D shapec
has sub-classes
ellipticc

superoxide dismutase activity phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005166

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
enzymatic activity phenotypec
has sub-classes
absence of superoxide dismutase activityc, altered superoxide dismutase activityc, presence of superoxide dismutase activityc

surface feature shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001925

This quality either inheres directly in the surface, or in the entity that has the surface. For example, to say that a particular fly wing is curved is shorthand for saying the wing has a surface which is curved.
has super-classes
shapec
has sub-classes
lobatec

surfactant resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007891

has super-classes
chemical resistance phenotypec
has sub-classes
altered resistance to a surfactantc, not resistant to a surfactantc, resistant to a surfactantc

survival in macrophage phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007455

has super-classes
microbe-host interaction phenotypec
has sub-classes
absence of survival in macrophagec, altered survival in macrophagec, internalization by macrophage phenotypec, presence of survival in macrophagec

swollen sporangiumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007227

has super-classes
endospore location phenotypec

tail morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005382

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
virion morphology phenotypec
has sub-classes
absence of tailc, presence of tailc

tangledc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001846

has super-classes
structurec

tapering vegetative cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007727

has super-classes
altered vegetative cell shapec

taxisc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0042330

has super-classes
response to external stimulusc
locomotionc
has sub-classes
chemotaxisc, energy taxisc

taxis phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000004

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
locomotion phenotypec and (inheres_inop some taxisc)
has super-classes
locomotion phenotypec
inheres_inop some taxisc
has sub-classes
aerotaxis phenotypec, altered taxisc, chemotaxis phenotypec, osmotaxis phenotypec

teardrop-shapedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002240

has super-classes
convex 3-D shapec

temperaturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000146

has super-classes
physical qualityc
has sub-classes
decreased temperaturec, increased temperaturec

temperature effects on population growth phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005002

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
effect of non-nutrient environmental factors on population growth phenotypec
has sub-classes
absence of population growth at high temperaturec, absence of population growth at low temperaturec, altered population growth at high temperaturec, altered population growth at low temperaturec, hyperthermophilec, mesophilec, presence of population growth at high temperaturec, presence of population growth at low temperaturec, psychrophilec, psychrotrophc, thermophilec

temporal distribution qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002323

has super-classes
physical quality of a processc
has sub-classes
occurrencec, offset qualityc, onset qualityc

terminal location of endosporec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007226

has super-classes
endospore location phenotypec

terminal phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007682

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbial phenotypec

tetracycline resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006062

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
antimicrobial agent resistance phenotypec
has sub-classes
altered tetracycline resistancec, not resistant to tetracyclinec, resistant to tetracyclinec

tetradc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000119

has super-classes
cell arrangement phenotypec

texturec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000150

has super-classes
morphologyc
has sub-classes
roughc, smoothc

thermophilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005004

has super-classes
temperature effects on population growth phenotypec

thicknessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000915

has super-classes
1-D extentc
has sub-classes
decreased thicknessc, increased thicknessc

timing of cell constriction phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000352

has super-classes
cell division during cell population growth phenotypec
has sub-classes
altered timing of cell constrictionc

timing of nucleoid separation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000353

has super-classes
cell division during cell population growth phenotypec
has sub-classes
altered timing of nucleoid separationc

titan cell formation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007554

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbial phenotypec
has sub-classes
altered titan cell formationc

titan cell morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007506

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cell morphology phenotypec
has sub-classes
absence of titan cellsc, altered titan cell morphologyc, presence of titan cellsc

tolerance to an antimicrobial agent phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007971

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Tolerance applies only to microbiocidal antimicrobial agents and not to microbiostatic agents. This is in contrast to resistance which applies to both microbiocidal and microbiostatic agents.
has super-classes
not resistant to an antimicrobial agentc
has sub-classes
altered tolerance to an antimicrobial agent phenotypec

trace element utilization phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000450

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
nutrient utilization phenotypec
has sub-classes
altered trace element utilizationc

transcription phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007106

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
microbial phenotypec and (inheres_inop some transcription, DNA-templatedc)
has super-classes
gene expression phenotypec
inheres_inop some transcription, DNA-templatedc
has sub-classes
absence of transcription of gene or operonc, altered transcriptionc, presence of transcription of gene or operonc

transcription regulation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007163

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
gene expression regulation phenotypec
has sub-classes
growth rate control of transcriptionc

transcription, DNA-templatedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0006351

has super-classes
RNA biosynthetic processc
cellular macromolecule biosynthetic processc
part_ofop some gene expressionc

translationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0006412

has super-classes
cellular macromolecule biosynthetic processc
cellular protein metabolic processc
part_ofop some gene expressionc

translation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007107

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
gene expression phenotypec and (inheres_inop some translationc)
has super-classes
gene expression phenotypec
inheres_inop some translationc
has sub-classes
altered translationc

translation regulation phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007164

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
gene expression regulation phenotypec

translucent colonyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000114

has super-classes
colony opacity phenotypec

transparent colonyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000115

has super-classes
colony opacity phenotypec

transport phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005260

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cellular process phenotypec
has sub-classes
absence of transportc, altered transportc, endocytosis phenotypec, presence of transportc

transporter activity phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007675

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
molecular function phenotypec
has sub-classes
absence of transporter activityc, altered transporter activityc, presence of transporter activityc

transposable element transposition phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005059

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
is equivalent to
microbial phenotypec and (inheres_inop some transpositionc)
has super-classes
genetic material phenotypec
biological process phenotypec
inheres_inop some transpositionc
has sub-classes
absence of transposable element transpositionc, altered transposable element transposition phenotypec, presence of transposable element transpositionc

transpositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0032196

has super-classes
single-organism cellular processc

trichome-formingc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000126

has super-classes
cell arrangement phenotypec

trophic qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000056

has super-classes
organismal qualityc
has sub-classes
auxotrophicc, prototrophicc

turbid plaque appearancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0008060

has super-classes
plaque appearance phenotypec

type IV pilus-dependent motilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0043107

has super-classes
cell motilityc

umbonate colony elevationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000164

has super-classes
colony elevation phenotypec

unbranchedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000414

has super-classes
branchinessc

undulate marginc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000154

has super-classes
colony margin phenotypec

unfused fromc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000651

has super-classes
structurec

unseptated germ tubec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007845

has super-classes
altered germ tube morphologyc

urea derivative resistance phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007533

The original term and its children were deemed to be too granular and were replaced with OMP:0007195 ! chemical resistance phenotype and its child terms, which are listed below. When using one of these terms for annotation, enter a database identifier for the specific chemical in the Annotation Extension field. OMP:0007247 resistant to a chemical OMP:0007246 not resistant to a chemical OMP:0007248 altered chemical resistance OMP:0007249 decreased resistance to a chemical OMP:0007883 abolished chemical resistance OMP:0007250 increased resistance to a chemical

urease negativec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006090

has super-classes
urease test phenotypec
has sub-classes
abolished urease activityc

urease positivec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0006089

has super-classes
urease test phenotypec

urease test phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000222

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
differential test phenotypec
has sub-classes
altered urease test resultc, urease negativec, urease positivec

utilization of inorganic nitrogen phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007034

has super-classes
inorganic nitrogen source utilization phenotypec

utilization of inorganic phosphorus phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007049

This term was made obsolete because it is redundant with OMP:0007045.

utilization of organic nitrogen phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007037

utilization of organic phosphorusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007052

This term was made obsolete because it is redunant with OMP:0007046.

vacuolar morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0005144

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cell morphology phenotypec
has sub-classes
altered vacuolar morphologyc

vegetative cell growth phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007691

has super-classes
cell growth phenotypec
has sub-classes
absence of vegetative cell growthc, altered vegetative cell growthc, presence of vegetative cell growthc

vegetative cell lysis phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007741

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cell lysis phenotypec
vegetative cell phenotypec
has sub-classes
absence of vegetative cell lysisc, altered vegetative cell lysisc, presence of vegetative cell lysisc

vegetative cell phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007745

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
cell phenotypec
has sub-classes
altered vegetative cell phenotypec, vegetative cell lysis phenotypec

vegetative cell population growth phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007795

has super-classes
cell population growth phenotypec
has sub-classes
absence of vegetative cell population growthc, altered vegetative cell population growthc, presence of vegetative cell population growthc

viabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000169

has super-classes
organismal qualityc
has sub-classes
lethal (sensu genetics)c, viablec

viablec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000719

has super-classes
viabilityc

viable but nonculturable cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007263

has super-classes
altered microbial cell viabilityc

viable cell populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007457

has super-classes
cell population viability phenotypec
has sub-classes
viable spore populationc, viable vegetative cell populationc

viable sporec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007836

has super-classes
presence of microbial cell viabilityc
spore viability phenotypec

viable spore populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007706

has super-classes
viable cell populationc

viable vegetative cellc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007716

has super-classes
presence of microbial cell viabilityc

viable vegetative cell populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007460

has super-classes
viable cell populationc

vibrioc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000077

has super-classes
spiral cell shapec

virion morphology phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007541

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
virus phenotypec
has sub-classes
capsid morphology phenotypec, pseudo tail morphology phenotypec, tail morphology phenotypec

virulence phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0000068

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbe-host interaction phenotypec
has sub-classes
absence of virulencec, altered virulencec, presence of virulencec

virus phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007540

This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has super-classes
microbial phenotypec
has sub-classes
virion morphology phenotypec

viscous colony consistencyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007126

has super-classes
colony consistency phenotypec

vitamin/enzyme cofactor requirementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OMP_0007040

has super-classes
requires growth factor(s)c
has sub-classes
altered vitamin/enzyme cofactor requirementc

volumec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000918

has super-classes
3-D extentc
has sub-classes
decreased volumec, increased volumec

wholenessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001442

has super-classes
structurec
has sub-classes
brokenc

Object Properties

adjacent_toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#adjacent_to

containsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#contains

Example: pre_miRNA contains miRNA_loop.

correlates_withop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#correlates_with

decreased_in_magnitude_relative_toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#decreased_in_magnitude_relative_to

This relation is used to determine the 'directionality' of relative qualities such as 'decreased strength', relative to the parent type, 'strength'.

has characteristics: transitive

has super-properties
different_in_magnitude_relative_toop
has domain
qualityc
has range
qualityc

decreased_relative_toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#decreased_relative_to

derives_fromop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#derives_from

different_in_magnitude_relative_toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#different_in_magnitude_relative_to

directly_associated_withop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#directly_associated_with

Example: 'Lewy bodies increased number related to dystrophic neurite increased number' (from annotation of PMID:8740227 in http://ccdb.ucsd.edu/1.0/NDPO.owl#ndpo_404). Here the increase in the number of lewy bodies is directly_associated_with the increase in the number of dystrophic neurites. Association is weaker than correlation or proportionality. These relations may be later added to PATO.
has domain
qualityc
has range
qualityc

duringop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/GOREL_0000002

ends_duringop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002093

has sub-properties
happens_duringop

exists_duringop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/GOREL_0000032

happens_duringop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002092

has characteristics: transitive

has super-properties
ends_duringop

has functional parentop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#has_functional_parent

has parent hydrideop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#has_parent_hydride

has roleop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000087

has_cross_sectionop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#has_cross_section

Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round.

has_dividend_entityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#has_dividend_entity

has_dividend_qualityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#has_dividend_quality

has super-properties
has_ratio_qualityop
has range
qualityc

has_divisor_entityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#has_divisor_entity

has_divisor_qualityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#has_divisor_quality

has super-properties
has_ratio_qualityop
has range
qualityc

has_originop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#has_origin

has_outputop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002234

has_partop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000051

Example: operon has_part gene.

has_qualityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#has_quality

The relationship between a feature and an attribute.

has_ratio_qualityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#has_ratio_quality

has sub-properties
has_dividend_qualityop, has_divisor_qualityop
has range
qualityc

increased_in_magnitude_relative_toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#increased_in_magnitude_relative_to

This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'.

has characteristics: transitive

has super-properties
different_in_magnitude_relative_toop
has domain
qualityc
has range
qualityc

increased_relative_toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#increased_relative_to

inheres in part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002314

inheres_inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000052

inversely_associated_withop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#inversely_associated_with

Association is weaker than correlation or proportionality. These relations may be later added to PATO.
has domain
qualityc
has range
qualityc

is conjugate acid ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#is_conjugate_acid_of

is conjugate base ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#is_conjugate_base_of

is enantiomer ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#is_enantiomer_of

is substituent group fromop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#is_substituent_group_from

is tautomer ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#is_tautomer_of

is_magnitude_ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#is_magnitude_of

is_measurement_ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#is_measurement_of

is_unit_ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#is_unit_of

located inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001025

member_ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#member_of

A subtype of part_of. Inverse is collection_of. Winston, M, Chaffin, R, Herrmann: A taxonomy of part-whole relations. Cognitive Science 1987, 11:417-444.

has characteristics: transitive

has super-properties
part_ofop

negatively regulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002212

has super-properties
regulatesop

non_functional_homolog_ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#non_functional_homolog_of

occurs inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000066

occurs_atop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/GOREL_0000501

output_ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002353

overlapsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#overlaps

Example: coding_exon overlaps CDS.

part_ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000050

Example: amino_acid part_of polypeptide.

has characteristics: transitive

has sub-properties
member_ofop

participates_inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000056

positively regulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002213

has super-properties
regulatesop

preceded_byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000062

precedesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000063

qualifierop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#qualifier

realized_byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#realized_by

reciprocal_ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#reciprocal_of

There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality.

regulatesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002211

has characteristics: transitive

has sub-properties
negatively regulatesop, positively regulatesop

similar_in_magnitude_relative_toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#similar_in_magnitude_relative_to

has domain
qualityc
has range
qualityc

singly_occurring_form_ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#singly_occurring_form_of

PATO divides qualities between normal (monadic, singly-occurring) qualities and relational qualities. Relational qualities stand in the 'towards' relation with respect to some additional entity. For example, The sensitivity of an eye towards red light. In some cases we want to represent a quality such as 'protruding' in both monadic and relational branches. We use this relation to link them.

towardsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002503

Relation binding a relational quality or disposition to the relevant type of entity.

transcribed_fromop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#transcribed_from

Example: primary_transcript transcribed_from gene.

transcribed_toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#transcribed_to

Example: gene transcribed_to primary_transcript.

variant_ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/omp#variant_of

Added to SO during the immunology workshop, June 2007. This relationship was approved by Barry Smith.

Annotation Properties

abnormal slimap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#abnormal_slim

Abnormal/normal slim
has super-properties
subset_propertyap

absent slimap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#absent_slim

Absent/present slim
has super-properties
subset_propertyap

attribute slimap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#attribute_slim

Attribute slim
has super-properties
subset_propertyap

auto generated byap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#auto-generated-by

BRAND NAMEap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#BRAND_NAME

has super-properties
synonym_type_propertyap

cell qualityap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#cell_quality

cell_quality
has super-properties
subset_propertyap

commentap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#comment

considerap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#consider

created byap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#created_by

creation dateap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#creation_date

cross product reviewap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#Cross_product_review

Involved_in
has super-properties
subset_propertyap

database_cross_referenceap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasDbXref

dateap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#date

default namespaceap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#default-namespace

definitionap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000115

deprecatedap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2002/07/owl#deprecated

disposition slimap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#disposition_slim

Disposition slim
has super-properties
subset_propertyap

expand assertion toap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000425

FORMULAap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#FORMULA

has super-properties
synonym_type_propertyap

goantislim groupingap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#goantislim_grouping

Grouping classes that can be excluded
has super-properties
subset_propertyap

goslim aspergillusap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#goslim_aspergillus

Aspergillus GO slim
has super-properties
subset_propertyap

goslim candidaap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#goslim_candida

Candida GO slim
has super-properties
subset_propertyap

goslim genericap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#goslim_generic

Generic GO slim
has super-properties
subset_propertyap

goslim goaap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#goslim_goa

GOA and proteome slim
has super-properties
subset_propertyap

goslim metagenomicsap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#goslim_metagenomics

Metagenomics GO slim
has super-properties
subset_propertyap

goslim pirap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#goslim_pir

PIR GO slim
has super-properties
subset_propertyap

goslim plantap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#goslim_plant

Plant GO slim
has super-properties
subset_propertyap

goslim pombeap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#goslim_pombe

Fission yeast GO slim
has super-properties
subset_propertyap

goslim virusap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#goslim_virus

Viral GO slim
has super-properties
subset_propertyap

goslim yeastap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#goslim_yeast

Yeast GO slim
has super-properties
subset_propertyap

gosubset prokap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#gosubset_prok

Prokaryotic GO subset
has super-properties
subset_propertyap

has_alternative_idap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasAlternativeId

has_broad_synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym

has_exact_synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasExactSynonym

has_narrow_synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym

has_obo_format_versionap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion

has_obo_namespaceap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasOBONamespace

has_related_synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym

has_scopeap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasScope

hpo slimap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#hpo_slim

Human phenotype slim
has super-properties
subset_propertyap

i a o 0000412ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000412

idap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#id

in_subsetap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#inSubset

InChIap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#InChI

has super-properties
synonym_type_propertyap

InChIKeyap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#InChIKey

has super-properties
synonym_type_propertyap

INNap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#INN

has super-properties
synonym_type_propertyap

is class levelap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#is_class_level

is cyclicap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#is_cyclic

is metadata tagap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#is_metadata_tag

is opposite_ofap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002604

IUPAC NAMEap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#IUPAC_NAME

has super-properties
synonym_type_propertyap

labelap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#label

mf needs reviewap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#mf_needs_review

Catalytic activity terms in need of attention
has super-properties
subset_propertyap

mpath slimap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#mpath_slim

Pathology slim
has super-properties
subset_propertyap

never_in_taxonap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002161

qc do not annotateap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#qc_do_not_annotate

Term not to be used for direct annotation
has super-properties
subset_propertyap

qc do not manually annotateap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#qc_do_not_manually_annotate

Term not to be used for direct manual annotation
has super-properties
subset_propertyap

relational slimap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#relational_slim

Relational slim: types of quality that require an additional entity in order to exist
has super-properties
subset_propertyap

s o f aap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#SOFA

SO feature annotation
has super-properties
subset_propertyap

saved byap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#saved-by

scalar slimap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#scalar_slim

Scalar slim
has super-properties
subset_propertyap

shorthandap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#shorthand

SMILESap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#SMILES

has super-properties
synonym_type_propertyap

subset_propertyap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#SubsetProperty

synonym_type_propertyap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty

has sub-properties
BRAND NAMEap, FORMULAap, INNap, IUPAC NAMEap, InChIap, InChIKeyap, SMILESap, Systematic synonymap

Systematic synonymap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#systematic_synonym

has super-properties
synonym_type_propertyap

term replaced byap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0100001

usageap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#usage

value slimap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#value_slim

Value slim
has super-properties
subset_propertyap

virus checkedap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/omp#virus_checked

Viral overhaul terms
has super-properties
subset_propertyap

Namespace Declarations back to ToC

default namespace
http://purl.obolibrary.org/obo/omp.owl#
2021-07-02
http://purl.obolibrary.org/obo/omp/releases/2021-07-02/
obo
http://purl.obolibrary.org/obo/
oboInOwl
http://www.geneontology.org/formats/oboInOwl#
omp
http://purl.obolibrary.org/obo/omp#
owl
http://www.w3.org/2002/07/owl#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
xsd
http://www.w3.org/2001/XMLSchema#

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni.