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Metadata

URI
http://purl.obolibrary.org/obo/pdumdv.owl
Version URI
http://purl.obolibrary.org/obo/pdumdv/releases/2020-03-10/pdumdv.owl
Ontology RDF
RDF (turtle)

Description

Modified from PD_ST by Thorsten Henrich

Table of Contents

  1. Classes
  2. Object Properties
  3. Annotation Properties
  4. Namespaces
  5. Legend

Overview

Pictures say 1,000 words
Figure 1: Ontology overview

Classes ↑

Platynereis life cycle stagec # Classes

URI http://purl.obolibrary.org/obo/PdumDv_0000090
Description

Developmental stages are typically demarcated by the timing of appearance, loss or transformation of specific anatomical structures.
Sub-classes obo:PdumDv_0001410c
obo:PdumDv_0000500c
obo:PdumDv_0001600c
obo:PdumDv_0001100c
obo:PdumDv_0000100c
obo:PdumDv_0001550c
obo:PdumDv_0001520c
obo:PdumDv_0000600c
obo:PdumDv_0001530c
obo:PdumDv_0000700c
obo:PdumDv_0000200c
obo:PdumDv_0001200c
obo:PdumDv_0001540c
obo:PdumDv_0001000c
obo:PdumDv_0001510c
obo:PdumDv_0000900c
obo:PdumDv_0000300c
obo:PdumDv_0000400c
obo:PdumDv_0001300c
obo:PdumDv_0000800c

zygote stagec # Classes

URI http://purl.obolibrary.org/obo/PdumDv_0000100
Description

At a temperature of 18 C this stages lasts from 0.00 hours till 2.00 hours.
Super-classes obo:PdumDv_0000090c

cleaving embryo stagec # Classes

URI http://purl.obolibrary.org/obo/PdumDv_0000200
Description

At a temperature of 18 C this stages lasts from 2.00 hours till 7.00 hours.
Super-classes obo:PdumDv_0000090c
Restrictions obo:BFO_0000062op some obo:PdumDv_0000100c

stereoblastula - stereogastrula stagec # Classes

URI http://purl.obolibrary.org/obo/PdumDv_0000300
Description

At a temperature of 18 C this stages lasts from 7.00 hours till 13.00 hours.
Super-classes obo:PdumDv_0000090c
Restrictions obo:BFO_0000062op some obo:PdumDv_0000200c

protrochophore stagec # Classes

URI http://purl.obolibrary.org/obo/PdumDv_0000400
Description

At a temperature of 18 C this stages lasts from 13.00 hours till 24.00 hours.
Super-classes obo:PdumDv_0000090c
Restrictions obo:BFO_0000062op some obo:PdumDv_0000300c

early trochophore stagec # Classes

URI http://purl.obolibrary.org/obo/PdumDv_0000500
Description

At a temperature of 18 C this stages lasts from 24.00 hours till 26.00 hours.
Super-classes obo:PdumDv_0000090c
Restrictions obo:BFO_0000062op some obo:PdumDv_0000400c

mid trochophore stagec # Classes

URI http://purl.obolibrary.org/obo/PdumDv_0000600
Description

At a temperature of 18 C this stages lasts from 26.00 hours till 40.00 hours.
Super-classes obo:PdumDv_0000090c
Restrictions obo:BFO_0000062op some obo:PdumDv_0000500c

late trochophore stagec # Classes

URI http://purl.obolibrary.org/obo/PdumDv_0000700
Description

At a temperature of 18 C this stages lasts from 40.00 hours till 48.00 hours.
Super-classes obo:PdumDv_0000090c
Restrictions obo:BFO_0000062op some obo:PdumDv_0000600c

early metatrochophore stagec # Classes

URI http://purl.obolibrary.org/obo/PdumDv_0000800
Description

At a temperature of 18 C this stages lasts from 48.00 hours till 51.00 hours.
Super-classes obo:PdumDv_0000090c
Restrictions obo:BFO_0000062op some obo:PdumDv_0000700c

mid metatrochophore stagec # Classes

URI http://purl.obolibrary.org/obo/PdumDv_0000900
Description

At a temperature of 18 C this stages lasts from 51.00 hours till 60.00 hours.
Super-classes obo:PdumDv_0000090c
Restrictions obo:BFO_0000062op some obo:PdumDv_0000800c

late metatrochophore stagec # Classes

URI http://purl.obolibrary.org/obo/PdumDv_0001000
Description

At a temperature of 18 C this stages lasts from 60.00 hours till 66.00 hours.
Super-classes obo:PdumDv_0000090c
Restrictions obo:BFO_0000062op some obo:PdumDv_0000900c

early nectochaete stagec # Classes

URI http://purl.obolibrary.org/obo/PdumDv_0001100
Description

At a temperature of 18 C this stages lasts from 66.00 hours till 75.00 hours.
Super-classes obo:PdumDv_0000090c
Restrictions obo:BFO_0000062op some obo:PdumDv_0001000c

mid nectochaete stagec # Classes

URI http://purl.obolibrary.org/obo/PdumDv_0001200
Description

At a temperature of 18 C this stages lasts from 75.00 hours till 96.00 hours.
Super-classes obo:PdumDv_0000090c
Restrictions obo:BFO_0000062op some obo:PdumDv_0001100c

late nectochaete stagec # Classes

URI http://purl.obolibrary.org/obo/PdumDv_0001300
Description

At a temperature of 18 C this stages lasts from 96.00 hours till 168.00 hours.
Super-classes obo:PdumDv_0000090c
Restrictions obo:BFO_0000062op some obo:PdumDv_0001200c

three-segmented errant juvenile stagec # Classes

URI http://purl.obolibrary.org/obo/PdumDv_0001410
Super-classes obo:PdumDv_0000090c
Restrictions obo:BFO_0000062op some obo:PdumDv_0001300c

4- and 5-segmented errant juvenile stagec # Classes

URI http://purl.obolibrary.org/obo/PdumDv_0001510
Super-classes obo:PdumDv_0000090c
Restrictions obo:BFO_0000062op some obo:PdumDv_0001410c

cephalic metamorphosis stagec # Classes

URI http://purl.obolibrary.org/obo/PdumDv_0001520
Super-classes obo:PdumDv_0000090c
Restrictions obo:BFO_0000062op some obo:PdumDv_0001510c

small atokous worm stagec # Classes

URI http://purl.obolibrary.org/obo/PdumDv_0001530
Super-classes obo:PdumDv_0000090c
Restrictions obo:BFO_0000062op some obo:PdumDv_0001520c

large atokous worm stagec # Classes

URI http://purl.obolibrary.org/obo/PdumDv_0001540
Super-classes obo:PdumDv_0000090c
Restrictions obo:BFO_0000062op some obo:PdumDv_0001530c

sexual metamorphosis stagec # Classes

URI http://purl.obolibrary.org/obo/PdumDv_0001550
Super-classes obo:PdumDv_0000090c
Restrictions obo:BFO_0000062op some obo:PdumDv_0001540c

adult (Heteronereis) stagec # Classes

URI http://purl.obolibrary.org/obo/PdumDv_0001600
Super-classes obo:PdumDv_0000090c
Restrictions obo:BFO_0000062op some obo:PdumDv_0001550c

Object Properties ↑

part ofop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000050

preceded_byop # OPs

URI http://purl.obolibrary.org/obo/BFO_0000062

immediately_preceded_byop # OPs

URI http://purl.obolibrary.org/obo/RO_0002087
Super-properties obo:BFO_0000062op

Annotation Properties ↑

definitionap # APs

URI http://purl.obolibrary.org/obo/IAO_0000115

granular_stageap # APs

URI http://purl.obolibrary.org/obo/pdumdv#granular_stage
Description

Subset consisting of classes describing highly granular developmental stages (for instance, '23-year-old'). Such stages might be useful for annotation purpose, but might be folded into less granular parents for display purpose.
Super-properties oboInOwl:SubsetPropertyap

subset_propertyap # APs

URI http://www.geneontology.org/formats/oboInOwl#SubsetProperty

default-namespaceap # APs

URI http://www.geneontology.org/formats/oboInOwl#default-namespace

database_cross_referenceap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasDbXref

has_exact_synonymap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasExactSynonym

has_narrow_synonymap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym

has_obo_format_versionap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion

has_obo_namespaceap # APs

URI http://www.geneontology.org/formats/oboInOwl#hasOBONamespace

idap # APs

URI http://www.geneontology.org/formats/oboInOwl#id

shorthandap # APs

URI http://www.geneontology.org/formats/oboInOwl#shorthand

commentap # APs

URI http://www.w3.org/2000/01/rdf-schema#comment

labelap # APs

URI http://www.w3.org/2000/01/rdf-schema#label

Namespaces ↑

default (:)
http://purl.obolibrary.org/obo/pdumdv.owl
dct
http://purl.org/dc/terms/
obo
http://purl.obolibrary.org/obo/
oboInOwl
http://www.geneontology.org/formats/oboInOwl#
owl
http://www.w3.org/2002/07/owl#
pdumdv
http://purl.obolibrary.org/obo/pdumdv#
prov
http://www.w3.org/ns/prov#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
sdo
https://schema.org/
skos
http://www.w3.org/2004/02/skos/core#
xsd
http://www.w3.org/2001/XMLSchema#

Legend

cClasses
opObject Properties
fpFunctional Properties
dpData Properties
dpAnnotation Properties
pProperties
niNamed Individuals