primary_transcript_attributec # Classes
| URI | http://purl.obolibrary.org/obo/SO_0000144 |
|---|
http://purl.obolibrary.org/obo/so.owl| URI | http://purl.obolibrary.org/obo/SO_0000001 |
|---|---|
| Super-classes |
obo:SO_0000110c |
| Sub-classes |
obo:SO_0001411c obo:SO_0001410c obo:SO_0001412c obo:SO_0001409c |
| URI | http://purl.obolibrary.org/obo/SO_0000002 |
|---|---|
| Super-classes |
obo:SO_0001411c |
| Sub-classes |
obo:SO_0000591c obo:SO_0000003c obo:SO_0000028c obo:SO_0000122c obo:SO_0000142c |
| URI | http://purl.obolibrary.org/obo/SO_0000003 |
|---|---|
| Super-classes |
obo:SO_0000002c |
| URI | http://purl.obolibrary.org/obo/SO_0000004 |
|---|---|
| Super-classes |
obo:SO_0000195c |
| URI | http://purl.obolibrary.org/obo/SO_0000005 |
|---|---|
| Super-classes |
obo:SO_0000705c |
| Sub-classes |
obo:SO_0000643c obo:SO_0000289c |
| URI | http://purl.obolibrary.org/obo/SO_0000006 |
|---|---|
| Description |
This term is mapped to MGED. This term is now located in OBI, with the following ID OBI_0000406. |
| Super-classes |
obo:SO_0000695c |
| Sub-classes |
obo:SO_0001481c obo:SO_0001830c |
| URI | http://purl.obolibrary.org/obo/SO_0000007 |
|---|---|
| Super-classes |
obo:SO_0000150c |
| Restrictions |
so:part_ofop some obo:SO_0000149c so:part_ofop some obo:SO_0001790c |
| URI | http://purl.obolibrary.org/obo/SO_0000010 |
|---|---|
| Super-classes |
obo:SO_0000401c |
| Sub-classes |
obo:SO_0000729c |
| URI | http://purl.obolibrary.org/obo/SO_0000011 |
|---|---|
| Super-classes |
obo:SO_0000401c |
| Sub-classes |
obo:SO_0000575c obo:SO_0000571c obo:SO_0000573c obo:SO_0000578c obo:SO_0000663c obo:SO_0000642c obo:SO_0000659c obo:SO_0000623c obo:SO_0000979c obo:SO_0000656c |
| URI | http://purl.obolibrary.org/obo/SO_0000012 |
|---|---|
| Super-classes |
obo:SO_0000483c |
| URI | http://purl.obolibrary.org/obo/SO_0000013 |
|---|---|
| Super-classes |
obo:SO_0000655c |
| Restrictions |
so:derives_fromop some obo:SO_0000012c |
| URI | http://purl.obolibrary.org/obo/SO_0000014 |
|---|---|
| Description |
Binds TAF1, TAF2. |
| Super-classes |
obo:SO_0001660c |
| Restrictions |
so:part_ofop some obo:SO_0001669c |
| URI | http://purl.obolibrary.org/obo/SO_0000015 |
|---|---|
| Description |
Binds TAF6, TAF9. |
| Super-classes |
obo:SO_0001660c |
| Restrictions |
so:part_ofop some obo:SO_0001669c |
| URI | http://purl.obolibrary.org/obo/SO_0000016 |
|---|---|
| Description |
Binds TFIIB. |
| Super-classes |
obo:SO_0001660c |
| Restrictions |
so:part_ofop some obo:SO_0001669c |
| URI | http://purl.obolibrary.org/obo/SO_0000017 |
|---|---|
| Super-classes |
obo:SO_0000713c |
| Restrictions |
so:part_ofop some obo:SO_0000167c |
| URI | http://purl.obolibrary.org/obo/SO_0000018 |
|---|---|
| Super-classes |
obo:SO_0001411c |
| URI | http://purl.obolibrary.org/obo/SO_0000020 |
|---|---|
| Super-classes |
obo:SO_0000715c |
| Sub-classes |
obo:SO_0000021c obo:SO_0000025c |
| URI | http://purl.obolibrary.org/obo/SO_0000021 |
|---|---|
| Super-classes |
obo:SO_0000020c |
| Sub-classes |
obo:SO_0000024c obo:SO_0000023c |
| URI | http://purl.obolibrary.org/obo/SO_0000022 |
|---|---|
| Super-classes |
obo:SO_0000715c |
| URI | http://purl.obolibrary.org/obo/SO_0000023 |
|---|---|
| Super-classes |
obo:SO_0000021c |
| URI | http://purl.obolibrary.org/obo/SO_0000024 |
|---|---|
| Super-classes |
obo:SO_0000021c |
| URI | http://purl.obolibrary.org/obo/SO_0000025 |
|---|---|
| Super-classes |
obo:SO_0000020c |
| URI | http://purl.obolibrary.org/obo/SO_0000026 |
|---|---|
| Super-classes |
obo:SO_0000715c |
| Sub-classes |
obo:SO_0000027c |
| URI | http://purl.obolibrary.org/obo/SO_0000027 |
|---|---|
| Super-classes |
obo:SO_0000026c |
| URI | http://purl.obolibrary.org/obo/SO_0000028 |
|---|---|
| Super-classes |
obo:SO_0000002c |
| Sub-classes |
obo:SO_0000500c obo:SO_0000029c obo:SO_0000030c obo:SO_0001015c obo:SO_0000501c |
| URI | http://purl.obolibrary.org/obo/SO_0000029 |
|---|---|
| Super-classes |
obo:SO_0000028c |
| URI | http://purl.obolibrary.org/obo/SO_0000030 |
|---|---|
| Super-classes |
obo:SO_0000028c |
| URI | http://purl.obolibrary.org/obo/SO_0000031 |
|---|---|
| Super-classes |
obo:SO_0000696c |
| Sub-classes |
obo:SO_0000032c obo:SO_0000033c |
| URI | http://purl.obolibrary.org/obo/SO_0000032 |
|---|---|
| Super-classes |
obo:SO_0000031c |
| URI | http://purl.obolibrary.org/obo/SO_0000033 |
|---|---|
| Super-classes |
obo:SO_0000031c |
| URI | http://purl.obolibrary.org/obo/SO_0000034 |
|---|---|
| Super-classes |
obo:SO_0001247c |
| Restrictions |
so:has_qualityop some obo:SO_0001183c |
| URI | http://purl.obolibrary.org/obo/SO_0000035 |
|---|---|
| Super-classes |
obo:SO_0000836c |
| Restrictions |
so:part_ofop some obo:SO_0000234c |
| URI | http://purl.obolibrary.org/obo/SO_0000036 |
|---|---|
| Super-classes |
obo:SO_0000626c |
| URI | http://purl.obolibrary.org/obo/SO_0000037 |
|---|---|
| Description |
Definition updated Nov 10 2020, Colin Logie from GREEKC helped us realize that LCRs can also be located 3' to a gene. |
| Super-classes |
obo:SO_0000727c |
| URI | http://purl.obolibrary.org/obo/SO_0000039 |
|---|---|
| Super-classes |
obo:SO_0001410c |
| Restrictions |
so:part_ofop some obo:SO_0000343c |
| URI | http://purl.obolibrary.org/obo/SO_0000040 |
|---|---|
| Super-classes |
obo:SO_0000151c |
| Restrictions |
so:has_qualityop some obo:SO_0000991c |
| URI | http://purl.obolibrary.org/obo/SO_0000043 |
|---|---|
| Description |
Please not the synonym R psi M uses the spelled out form of the greek letter. |
| Super-classes |
obo:SO_0000336c |
| Sub-classes |
obo:SO_0002109c obo:SO_0002105c |
| URI | http://purl.obolibrary.org/obo/SO_0000044 |
|---|---|
| Super-classes |
obo:SO_0001760c |
| URI | http://purl.obolibrary.org/obo/SO_0000051 |
|---|---|
| Super-classes |
obo:SO_0000696c |
| Sub-classes |
obo:SO_0000328c obo:SO_0001854c |
| URI | http://purl.obolibrary.org/obo/SO_0000053 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_0000054 |
|---|---|
| Super-classes |
obo:SO_1000182c |
| Sub-classes |
obo:SO_0000055c obo:SO_0000056c |
| URI | http://purl.obolibrary.org/obo/SO_0000055 |
|---|---|
| Super-classes |
obo:SO_0000054c |
| URI | http://purl.obolibrary.org/obo/SO_0000056 |
|---|---|
| Super-classes |
obo:SO_0000054c |
| URI | http://purl.obolibrary.org/obo/SO_0000057 |
|---|---|
| Description |
Moved to transcriptional_cis_regulatory_region (SO:0001055) from gene_group_regulatory_region (SO:0000752) on 11 Feb 2021 when SO:0000752 was merged into SO:0001055. See GitHub Issue #529. |
| Super-classes |
obo:SO_0001055c |
| URI | http://purl.obolibrary.org/obo/SO_0000059 |
|---|---|
| Super-classes |
obo:SO_0001654c |
| Sub-classes |
obo:SO_0000684c obo:SO_0001257c obo:SO_0000061c |
| URI | http://purl.obolibrary.org/obo/SO_0000060 |
|---|---|
| Description |
FLAG - this term is should probably be a part of rather than an is_a. |
| Super-classes |
obo:SO_1000042c |
| URI | http://purl.obolibrary.org/obo/SO_0000061 |
|---|---|
| Description |
A region of a molecule that binds to a restriction enzyme. |
| Super-classes |
obo:SO_0000059c |
| URI | http://purl.obolibrary.org/obo/SO_0000062 |
|---|---|
| Super-classes |
obo:SO_1000029c obo:SO_1000041c |
| Restrictions |
so:has_partop some obo:SO_0000159c |
| URI | http://purl.obolibrary.org/obo/SO_0000063 |
|---|---|
| Super-classes |
obo:SO_1000155c |
| URI | http://purl.obolibrary.org/obo/SO_0000064 |
|---|---|
| Description |
This classes of attributes was added by MA to allow the broad description of genes based on qualities of the transcript(s). A product of SO meeting 2004. |
| URI | http://purl.obolibrary.org/obo/SO_0000065 |
|---|---|
| Super-classes |
obo:SO_1000183c |
| URI | http://purl.obolibrary.org/obo/SO_0000067 |
|---|---|
| Super-classes |
obo:SO_0000401c |
| Sub-classes |
obo:SO_0000068c |
| URI | http://purl.obolibrary.org/obo/SO_0000068 |
|---|---|
| Super-classes |
obo:SO_0000067c |
| Sub-classes |
obo:SO_0000075c obo:SO_0000074c obo:SO_0000077c obo:SO_0000076c obo:SO_0000073c obo:SO_0000069c |
| URI | http://purl.obolibrary.org/obo/SO_0000069 |
|---|---|
| Super-classes |
obo:SO_0000068c |
| Sub-classes |
obo:SO_0000071c obo:SO_0000070c |
| URI | http://purl.obolibrary.org/obo/SO_0000070 |
|---|---|
| Super-classes |
obo:SO_0000069c |
| URI | http://purl.obolibrary.org/obo/SO_0000071 |
|---|---|
| Super-classes |
obo:SO_0000069c |
| URI | http://purl.obolibrary.org/obo/SO_0000073 |
|---|---|
| Super-classes |
obo:SO_0000068c |
| URI | http://purl.obolibrary.org/obo/SO_0000074 |
|---|---|
| Super-classes |
obo:SO_0000068c |
| URI | http://purl.obolibrary.org/obo/SO_0000075 |
|---|---|
| Super-classes |
obo:SO_0000068c |
| URI | http://purl.obolibrary.org/obo/SO_0000076 |
|---|---|
| Super-classes |
obo:SO_0000068c |
| URI | http://purl.obolibrary.org/obo/SO_0000077 |
|---|---|
| Super-classes |
obo:SO_0000068c |
| URI | http://purl.obolibrary.org/obo/SO_0000078 |
|---|---|
| Super-classes |
obo:SO_0000673c |
| Restrictions |
so:has_qualityop some obo:SO_0000880c |
| Sub-classes |
obo:SO_0000634c obo:SO_0000079c obo:SO_0000631c |
| URI | http://purl.obolibrary.org/obo/SO_0000079 |
|---|---|
| Super-classes |
obo:SO_0000078c |
| Restrictions |
so:has_qualityop some obo:SO_0000879c |
| Sub-classes |
obo:SO_0000716c obo:SO_1001197c |
| URI | http://purl.obolibrary.org/obo/SO_0000080 |
|---|---|
| Super-classes |
obo:SO_0000081c |
| URI | http://purl.obolibrary.org/obo/SO_0000081 |
|---|---|
| Super-classes |
obo:SO_0000401c |
| Sub-classes |
obo:SO_0005848c obo:SO_0005849c obo:SO_0000080c obo:SO_1001217c |
| URI | http://purl.obolibrary.org/obo/SO_0000083 |
|---|---|
| Super-classes |
obo:SO_0000736c |
| URI | http://purl.obolibrary.org/obo/SO_0000084 |
|---|---|
| Super-classes |
obo:SO_0000736c |
| URI | http://purl.obolibrary.org/obo/SO_0000087 |
|---|---|
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:has_originop some obo:SO_0000738c |
| URI | http://purl.obolibrary.org/obo/SO_0000088 |
|---|---|
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:has_originop some obo:SO_0000737c |
| Sub-classes |
obo:SO_0000089c |
| URI | http://purl.obolibrary.org/obo/SO_0000089 |
|---|---|
| Super-classes |
obo:SO_0000088c |
| Restrictions |
so:has_originop some obo:SO_0000741c |
| Sub-classes |
obo:SO_0000975c obo:SO_0000654c |
| URI | http://purl.obolibrary.org/obo/SO_0000090 |
|---|---|
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:has_originop some obo:SO_0000740c |
| Sub-classes |
obo:SO_0000094c obo:SO_0000091c obo:SO_0000095c obo:SO_0000096c obo:SO_0000092c obo:SO_0000093c |
| URI | http://purl.obolibrary.org/obo/SO_0000091 |
|---|---|
| Super-classes |
obo:SO_0000090c |
| Restrictions |
so:has_originop some obo:SO_0000743c |
| URI | http://purl.obolibrary.org/obo/SO_0000092 |
|---|---|
| Super-classes |
obo:SO_0000090c |
| Restrictions |
so:has_originop some obo:SO_0000745c |
| URI | http://purl.obolibrary.org/obo/SO_0000093 |
|---|---|
| Super-classes |
obo:SO_0000090c |
| Restrictions |
so:has_originop some obo:SO_0000744c |
| URI | http://purl.obolibrary.org/obo/SO_0000094 |
|---|---|
| Super-classes |
obo:SO_0000090c |
| Restrictions |
so:has_originop some obo:SO_0000746c |
| URI | http://purl.obolibrary.org/obo/SO_0000095 |
|---|---|
| Super-classes |
obo:SO_0000090c |
| Restrictions |
so:has_originop some obo:SO_0000747c |
| URI | http://purl.obolibrary.org/obo/SO_0000096 |
|---|---|
| Super-classes |
obo:SO_0000090c |
| Restrictions |
so:has_originop some obo:SO_0000748c |
| URI | http://purl.obolibrary.org/obo/SO_0000097 |
|---|---|
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:has_originop some obo:SO_0000739c |
| URI | http://purl.obolibrary.org/obo/SO_0000098 |
|---|---|
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:has_originop some obo:SO_0000749c |
| URI | http://purl.obolibrary.org/obo/SO_0000099 |
|---|---|
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:has_originop some obo:SO_0000751c |
| Sub-classes |
obo:SO_0000100c |
| URI | http://purl.obolibrary.org/obo/SO_0000100 |
|---|---|
| Super-classes |
obo:SO_0000099c |
| Restrictions |
so:has_originop some obo:SO_0000903c |
| URI | http://purl.obolibrary.org/obo/SO_0000101 |
|---|---|
| Super-classes |
obo:SO_0001039c |
| Sub-classes |
obo:SO_0000182c obo:SO_0000720c obo:SO_0000797c obo:SO_0000798c obo:SO_0000796c obo:SO_0000180c obo:SO_0001648c |
| URI | http://purl.obolibrary.org/obo/SO_0000102 |
|---|---|
| Super-classes |
obo:SO_0000347c |
| Sub-classes |
obo:SO_0000668c obo:SO_0001471c obo:SO_0000689c obo:SO_0001470c |
| URI | http://purl.obolibrary.org/obo/SO_0000103 |
|---|---|
| Super-classes |
obo:SO_0000699c |
| Restrictions |
so:part_ofop some obo:SO_0000753c |
| URI | http://purl.obolibrary.org/obo/SO_0000104 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. The term 'protein' was merged with 'polypeptide'. Although 'protein' was a sequence_attribute and therefore meant to describe the quality rather than an actual feature, it was being used erroneously. It is replaced by 'peptidyl' as the polymer attribute. |
| Super-classes |
obo:SO_0001411c |
| Restrictions |
so:derives_fromop some obo:SO_0000316c |
| URI | http://purl.obolibrary.org/obo/SO_0000105 |
|---|---|
| Super-classes |
obo:SO_0000830c |
| URI | http://purl.obolibrary.org/obo/SO_0000107 |
|---|---|
| Super-classes |
obo:SO_0000112c |
| URI | http://purl.obolibrary.org/obo/SO_0000108 |
|---|---|
| Super-classes |
obo:SO_0000234c |
| Restrictions |
so:has_qualityop some obo:SO_0000865c |
| Sub-classes |
obo:SO_0000282c obo:SO_0000335c obo:SO_0000329c obo:SO_0000321c |
| URI | http://purl.obolibrary.org/obo/SO_0000110 |
|---|---|
| Sub-classes |
obo:SO_0000001c obo:SO_0000699c obo:SO_0002072c |
| URI | http://purl.obolibrary.org/obo/SO_0000111 |
|---|---|
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:part_ofop some obo:SO_0000101c |
| Sub-classes |
obo:SO_0000283c |
| URI | http://purl.obolibrary.org/obo/SO_0000112 |
|---|---|
| Super-classes |
obo:SO_0000441c |
| Sub-classes |
obo:SO_0000132c obo:SO_0000121c obo:SO_0000107c obo:SO_0001698c obo:SO_0001699c |
| URI | http://purl.obolibrary.org/obo/SO_0000113 |
|---|---|
| Super-classes |
obo:SO_0001039c |
| Sub-classes |
obo:SO_0001006c |
| URI | http://purl.obolibrary.org/obo/SO_0000114 |
|---|---|
| Super-classes |
obo:SO_0000306c obo:SO_0001963c |
| Sub-classes |
obo:SO_0001918c obo:SO_0001919c obo:SO_0001960c |
| URI | http://purl.obolibrary.org/obo/SO_0000116 |
|---|---|
| Super-classes |
obo:SO_0000237c |
| URI | http://purl.obolibrary.org/obo/SO_0000118 |
|---|---|
| Super-classes |
obo:SO_0000673c |
| Restrictions |
so:has_qualityop some obo:SO_0000887c |
| URI | http://purl.obolibrary.org/obo/SO_0000119 |
|---|---|
| Super-classes |
obo:SO_0000401c |
| Sub-classes |
obo:SO_0000134c obo:SO_0000131c obo:SO_0000123c obo:SO_0000130c |
| URI | http://purl.obolibrary.org/obo/SO_0000120 |
|---|---|
| Description |
May contain introns. |
| Super-classes |
obo:SO_0000185c |
| Sub-classes |
obo:SO_0002112c obo:SO_0000932c obo:SO_0002114c |
| URI | http://purl.obolibrary.org/obo/SO_0000121 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0000112c |
| Restrictions |
so:has_qualityop some obo:SO_0001030c |
| URI | http://purl.obolibrary.org/obo/SO_0000122 |
|---|---|
| Super-classes |
obo:SO_0000002c |
| Sub-classes |
obo:SO_0000313c obo:SO_0002253c |
| URI | http://purl.obolibrary.org/obo/SO_0000123 |
|---|---|
| Description |
By: |
| Super-classes |
obo:SO_0000119c |
| Sub-classes |
obo:SO_0000125c obo:SO_0000126c obo:SO_0000124c obo:SO_0000471c |
| URI | http://purl.obolibrary.org/obo/SO_0000124 |
|---|---|
| Super-classes |
obo:SO_0000123c |
| URI | http://purl.obolibrary.org/obo/SO_0000125 |
|---|---|
| Super-classes |
obo:SO_0000123c |
| Sub-classes |
obo:SO_0000475c |
| URI | http://purl.obolibrary.org/obo/SO_0000126 |
|---|---|
| Super-classes |
obo:SO_0000123c |
| Sub-classes |
obo:SO_0000893c obo:SO_0000473c |
| URI | http://purl.obolibrary.org/obo/SO_0000127 |
|---|---|
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:has_qualityop some obo:SO_0000893c |
| Sub-classes |
obo:SO_0001225c obo:SO_0001224c obo:SO_0000128c |
| URI | http://purl.obolibrary.org/obo/SO_0000128 |
|---|---|
| Super-classes |
obo:SO_0000127c |
| Restrictions |
so:has_qualityop some obo:SO_0000894c |
| Sub-classes |
obo:SO_0000129c |
| URI | http://purl.obolibrary.org/obo/SO_0000129 |
|---|---|
| Super-classes |
obo:SO_0000128c |
| Restrictions |
so:has_qualityop some obo:SO_0000895c |
| URI | http://purl.obolibrary.org/obo/SO_0000130 |
|---|---|
| Super-classes |
obo:SO_0000119c |
| Sub-classes |
obo:SO_0000467c obo:SO_0000469c |
| URI | http://purl.obolibrary.org/obo/SO_0000131 |
|---|---|
| Super-classes |
obo:SO_0000119c |
| URI | http://purl.obolibrary.org/obo/SO_0000132 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0000112c |
| Restrictions |
so:has_qualityop some obo:SO_0001031c |
| URI | http://purl.obolibrary.org/obo/SO_0000133 |
|---|---|
| Super-classes |
obo:SO_0000401c |
| Sub-classes |
obo:SO_0000904c obo:SO_0000134c obo:SO_0000137c |
| URI | http://purl.obolibrary.org/obo/SO_0000134 |
|---|---|
| Super-classes |
obo:SO_0000119c obo:SO_0000133c |
| Sub-classes |
obo:SO_0000136c obo:SO_0000135c |
| URI | http://purl.obolibrary.org/obo/SO_0000135 |
|---|---|
| Super-classes |
obo:SO_0000134c |
| URI | http://purl.obolibrary.org/obo/SO_0000136 |
|---|---|
| Super-classes |
obo:SO_0000134c |
| URI | http://purl.obolibrary.org/obo/SO_0000137 |
|---|---|
| Description |
Examples are x-inactivation and immunoglobulin formation. |
| Super-classes |
obo:SO_0000133c |
| URI | http://purl.obolibrary.org/obo/SO_0000138 |
|---|---|
| Super-classes |
obo:SO_0000898c |
| Restrictions |
so:has_qualityop some obo:SO_0000904c |
| URI | http://purl.obolibrary.org/obo/SO_0000139 |
|---|---|
| Super-classes |
obo:SO_0000836c |
| Restrictions |
so:part_ofop some obo:SO_0000204c |
| Sub-classes |
obo:SO_0000243c obo:SO_0001647c obo:SO_0000552c |
| URI | http://purl.obolibrary.org/obo/SO_0000140 |
|---|---|
| Super-classes |
obo:SO_0001680c |
| Restrictions |
so:part_ofop some obo:SO_0000234c |
| URI | http://purl.obolibrary.org/obo/SO_0000141 |
|---|---|
| Description |
Moved from transcription_regulatory_region (SO:0001679) to transcriptional_cis_regulatory_region (SO:0001055) by Dave Sant on Feb 11, 2021 when transcription_regulatory_region was merged into transcriptional_cis_regulatory_region to be consistent with GO and reduce redundancy as part of the GREEKC consortium. See GitHub Issue #527. |
| Super-classes |
obo:SO_0001055c |
| Restrictions |
so:part_ofop some obo:SO_0000673c |
| Sub-classes |
obo:SO_0000951c obo:SO_0000614c |
| URI | http://purl.obolibrary.org/obo/SO_0000142 |
|---|---|
| Super-classes |
obo:SO_0000002c |
| Sub-classes |
obo:SO_0001010c |
| URI | http://purl.obolibrary.org/obo/SO_0000143 |
|---|---|
| Super-classes |
obo:SO_0001410c |
| Sub-classes |
obo:SO_0000730c obo:SO_0001253c obo:SO_0000150c obo:SO_0000468c obo:SO_0000149c obo:SO_0000474c obo:SO_0001790c obo:SO_0000412c |
| URI | http://purl.obolibrary.org/obo/SO_0000145 |
|---|---|
| Super-classes |
obo:SO_0000360c |
| Sub-classes |
obo:SO_0000883c |
| URI | http://purl.obolibrary.org/obo/SO_0000146 |
|---|---|
| Super-classes |
obo:SO_0000237c |
| URI | http://purl.obolibrary.org/obo/SO_0000147 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0000833c |
| Sub-classes |
obo:SO_0000198c obo:SO_0000201c obo:SO_0000195c obo:SO_0005845c |
| URI | http://purl.obolibrary.org/obo/SO_0000148 |
|---|---|
| Super-classes |
obo:SO_0001876c |
| Restrictions |
so:part_ofop some obo:SO_0000719c |
| Sub-classes |
obo:SO_0001875c obo:SO_0001922c |
| URI | http://purl.obolibrary.org/obo/SO_0000149 |
|---|---|
| Super-classes |
obo:SO_0000353c obo:SO_0000143c |
| Restrictions |
so:part_ofop some obo:SO_0000148c |
| Sub-classes |
obo:SO_0001866c obo:SO_0002209c obo:SO_0001829c obo:SO_0001921c |
| URI | http://purl.obolibrary.org/obo/SO_0000150 |
|---|---|
| Super-classes |
obo:SO_0000143c |
| Restrictions |
so:part_ofop some obo:SO_0000149c |
| Sub-classes |
obo:SO_0001480c obo:SO_0000476c obo:SO_0001426c obo:SO_0001828c obo:SO_0001929c obo:SO_0000007c obo:SO_0001827c obo:SO_0001424c obo:SO_0001425c obo:SO_0001793c obo:SO_0000999c obo:SO_0001423c obo:SO_0001498c obo:SO_0001930c |
| URI | http://purl.obolibrary.org/obo/SO_0000151 |
|---|---|
| Super-classes |
obo:SO_0000695c |
| Sub-classes |
obo:SO_0000480c obo:SO_0000040c obo:SO_0000317c |
| URI | http://purl.obolibrary.org/obo/SO_0000152 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0000440c |
| URI | http://purl.obolibrary.org/obo/SO_0000153 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0000440c |
| URI | http://purl.obolibrary.org/obo/SO_0000154 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. Drosophila melanogaster PACs carry an average insert size of 80 kb. The library represents a 6-fold coverage of the genome. |
| Super-classes |
obo:SO_0000440c |
| URI | http://purl.obolibrary.org/obo/SO_0000155 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0001235c |
| Sub-classes |
obo:SO_0001476c obo:SO_0002212c obo:SO_0000768c obo:SO_0002211c obo:SO_0000637c |
| URI | http://purl.obolibrary.org/obo/SO_0000156 |
|---|---|
| Description |
Paper: vans GA et al. High efficiency vectors for cosmid microcloning and genomic analysis. Gene 1989; 79(1):9-20. This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0000440c |
| URI | http://purl.obolibrary.org/obo/SO_0000157 |
|---|---|
| Super-classes |
obo:SO_0000440c |
| URI | http://purl.obolibrary.org/obo/SO_0000158 |
|---|---|
| Description |
Birren BW et al. A human chromosome 22 fosmid resource: mapping and analysis of 96 clones. Genomics 1996. |
| Super-classes |
obo:SO_0000440c |
| URI | http://purl.obolibrary.org/obo/SO_0000159 |
|---|---|
| Super-classes |
obo:SO_0001411c obo:SO_0001059c |
| Sub-classes |
obo:SO_0002066c |
| URI | http://purl.obolibrary.org/obo/SO_0000161 |
|---|---|
| Super-classes |
obo:SO_0000306c obo:SO_0001962c |
| Sub-classes |
obo:SO_0001920c |
| URI | http://purl.obolibrary.org/obo/SO_0000162 |
|---|---|
| Description |
With spliceosomal introns, the splice sites bind the spliceosomal machinery. |
| Super-classes |
obo:SO_0000835c |
| Sub-classes |
obo:SO_0001419c obo:SO_0001533c obo:SO_0001420c |
| URI | http://purl.obolibrary.org/obo/SO_0000163 |
|---|---|
| Super-classes |
obo:SO_0001419c |
| Sub-classes |
obo:SO_0000679c obo:SO_0000677c |
| URI | http://purl.obolibrary.org/obo/SO_0000164 |
|---|---|
| Super-classes |
obo:SO_0001419c |
| Sub-classes |
obo:SO_0000678c obo:SO_0000676c |
| URI | http://purl.obolibrary.org/obo/SO_0000165 |
|---|---|
| Description |
An enhancer may participate in an enhanceosome GO:0034206. A protein-DNA complex formed by the association of a distinct set of general and specific transcription factors with a region of enhancer DNA. The cooperative assembly of an enhanceosome confers specificity of transcriptional regulation. This comment is a place holder should we start to make cross products with GO. |
| Super-classes |
obo:SO_0000727c |
| Sub-classes |
obo:SO_0001482c obo:SO_0000166c |
| URI | http://purl.obolibrary.org/obo/SO_0000166 |
|---|---|
| Super-classes |
obo:SO_0000165c |
| Restrictions |
so:has_qualityop some obo:SO_0000277c |
| URI | http://purl.obolibrary.org/obo/SO_0000167 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. The region on a DNA molecule involved in RNA polymerase binding to initiate transcription. Moved from is_a: SO:0001055 transcriptional_cis_regulatory_region as per request from GREEKC initiative in August 2020. Merged with RNA_polymerase_promoter (SO:0001203) Aug 2020. Moved up one level from is_a CRM (SO:0000727) to is_a transcriptional_cis_regulatory_region (SO:0001055) as part of the GREEKC work January 2021. Pascale Gaudet from Gene Ontology pointed out that CRM can be located upstream of the promoter and therefore cannot include the promoter. |
| Super-classes |
obo:SO_0001055c obo:SO_0000842c |
| Sub-classes |
obo:SO_0002051c obo:SO_0002310c obo:SO_0000568c obo:SO_0002222c obo:SO_0002221c obo:SO_0002050c obo:SO_0002311c |
| URI | http://purl.obolibrary.org/obo/SO_0000169 |
|---|---|
| Description |
parent term RNA_polymerase_promoter SO:0001203 was obsoleted in Aug 2020, so term has been moved to eukaryotic_promoter SO:0002221. |
| Super-classes |
obo:SO_0002221c |
| URI | http://purl.obolibrary.org/obo/SO_0000170 |
|---|---|
| Description |
parent term RNA_polymerase_promoter SO:0001203 was obsoleted in Aug 2020, so term has been moved to eukaryotic_promoter SO:0002221. |
| Super-classes |
obo:SO_0002221c |
| Sub-classes |
obo:SO_0001669c |
| URI | http://purl.obolibrary.org/obo/SO_0000171 |
|---|---|
| Description |
parent term RNA_polymerase_promoter SO:0001203 was obsoleted in Aug 2020, so term has been moved to eukaryotic_promoter SO:0002221. |
| Super-classes |
obo:SO_0002221c |
| Sub-classes |
obo:SO_0000618c obo:SO_0000621c obo:SO_0000617c |
| URI | http://purl.obolibrary.org/obo/SO_0000172 |
|---|---|
| Super-classes |
obo:SO_0000713c |
| Restrictions |
so:part_ofop some obo:SO_0000170c |
| URI | http://purl.obolibrary.org/obo/SO_0000173 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| Restrictions |
so:part_ofop some obo:SO_0000170c |
| URI | http://purl.obolibrary.org/obo/SO_0000174 |
|---|---|
| Description |
Binds TBP. |
| Super-classes |
obo:SO_0001660c |
| Sub-classes |
obo:SO_0001661c obo:SO_0001662c |
| URI | http://purl.obolibrary.org/obo/SO_0000175 |
|---|---|
| Description |
Changed from is_a SO:0000713 DNA_motif to is_a SO:0002312 core_prokaryotic_promoter_element in response to GREEKC Initiative Dave Sant Aug 2020. |
| Super-classes |
obo:SO_0002312c |
| Restrictions |
so:part_ofop some obo:SO_0001913c so:part_ofop some obo:SO_0001671c |
| URI | http://purl.obolibrary.org/obo/SO_0000176 |
|---|---|
| Description |
Changed from is_a SO:0000713 DNA_motif to is_a SO:0002312 core_prokaryotic_promoter_element in response to GREEKC Initiative Dave Sant Aug 2020. |
| Super-classes |
obo:SO_0002312c |
| Restrictions |
so:part_ofop some obo:SO_0001671c so:part_ofop some obo:SO_0001913c |
| URI | http://purl.obolibrary.org/obo/SO_0000177 |
|---|---|
| Super-classes |
obo:SO_0000347c |
| URI | http://purl.obolibrary.org/obo/SO_0000178 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. Definition updated with per Mejia-Almonte et.al Redefining fundamental concepts of transcription initiation in prokaryotes Aug 5 2020. |
| Super-classes |
obo:SO_0005855c |
| Sub-classes |
obo:SO_0002299c obo:SO_0002298c |
| URI | http://purl.obolibrary.org/obo/SO_0000179 |
|---|---|
| Super-classes |
obo:SO_0000699c |
| Restrictions |
so:part_ofop some obo:SO_0000753c |
| URI | http://purl.obolibrary.org/obo/SO_0000180 |
|---|---|
| Super-classes |
obo:SO_0000101c |
| Sub-classes |
obo:SO_0000189c obo:SO_0000186c |
| URI | http://purl.obolibrary.org/obo/SO_0000181 |
|---|---|
| Super-classes |
obo:SO_0000347c |
| URI | http://purl.obolibrary.org/obo/SO_0000182 |
|---|---|
| Super-classes |
obo:SO_0000101c |
| Sub-classes |
obo:SO_0000371c obo:SO_0000238c obo:SO_0002277c obo:SO_0000208c obo:SO_0000544c |
| URI | http://purl.obolibrary.org/obo/SO_0000183 |
|---|---|
| Super-classes |
obo:SO_0000842c |
| URI | http://purl.obolibrary.org/obo/SO_0000184 |
|---|---|
| Description |
May have either GT-AG or AT-AG 5' and 3' boundaries. |
| Super-classes |
obo:SO_0000662c |
| URI | http://purl.obolibrary.org/obo/SO_0000185 |
|---|---|
| Super-classes |
obo:SO_0000673c |
| Sub-classes |
obo:SO_0000120c obo:SO_0001905c obo:SO_0000635c obo:SO_0000631c obo:SO_0002115c obo:SO_0000861c obo:SO_0000632c obo:SO_0000483c obo:SO_0000645c |
| URI | http://purl.obolibrary.org/obo/SO_0000186 |
|---|---|
| Super-classes |
obo:SO_0000180c |
| Sub-classes |
obo:SO_0002268c obo:SO_0002261c obo:SO_0002267c obo:SO_0002260c obo:SO_0002265c obo:SO_0002264c obo:SO_0002266c |
| URI | http://purl.obolibrary.org/obo/SO_0000188 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0000835c |
| Sub-classes |
obo:SO_0000190c obo:SO_0000446c obo:SO_0000192c obo:SO_0001958c obo:SO_0001216c obo:SO_0000406c obo:SO_0000588c obo:SO_0000662c obo:SO_0000666c obo:SO_0000191c |
| URI | http://purl.obolibrary.org/obo/SO_0000189 |
|---|---|
| Super-classes |
obo:SO_0000180c |
| Sub-classes |
obo:SO_0000206c obo:SO_0000194c obo:SO_0002290c obo:SO_0002286c |
| URI | http://purl.obolibrary.org/obo/SO_0000190 |
|---|---|
| Super-classes |
obo:SO_0000188c |
| URI | http://purl.obolibrary.org/obo/SO_0000191 |
|---|---|
| Super-classes |
obo:SO_0000188c |
| URI | http://purl.obolibrary.org/obo/SO_0000192 |
|---|---|
| Super-classes |
obo:SO_0000188c |
| URI | http://purl.obolibrary.org/obo/SO_0000193 |
|---|---|
| Super-classes |
obo:SO_0000412c |
| URI | http://purl.obolibrary.org/obo/SO_0000194 |
|---|---|
| Super-classes |
obo:SO_0000189c |
| Sub-classes |
obo:SO_0002271c obo:SO_0002273c obo:SO_0002272c obo:SO_0002270c obo:SO_0002269c |
| URI | http://purl.obolibrary.org/obo/SO_0000195 |
|---|---|
| Super-classes |
obo:SO_0000147c |
| Sub-classes |
obo:SO_0000200c obo:SO_0000202c obo:SO_0000004c |
| URI | http://purl.obolibrary.org/obo/SO_0000196 |
|---|---|
| Super-classes |
obo:SO_0001215c |
| Restrictions |
so:part_ofop some obo:SO_0000200c |
| URI | http://purl.obolibrary.org/obo/SO_0000197 |
|---|---|
| Super-classes |
obo:SO_0001215c |
| Restrictions |
so:part_ofop some obo:SO_0000202c |
| URI | http://purl.obolibrary.org/obo/SO_0000198 |
|---|---|
| Super-classes |
obo:SO_0000147c |
| Sub-classes |
obo:SO_0000445c obo:SO_0000444c |
| URI | http://purl.obolibrary.org/obo/SO_0000199 |
|---|---|
| Super-classes |
obo:SO_0001785c |
| Sub-classes |
obo:SO_1000044c |
| URI | http://purl.obolibrary.org/obo/SO_0000200 |
|---|---|
| Super-classes |
obo:SO_0000195c |
| URI | http://purl.obolibrary.org/obo/SO_0000201 |
|---|---|
| Super-classes |
obo:SO_0000147c |
| URI | http://purl.obolibrary.org/obo/SO_0000202 |
|---|---|
| Super-classes |
obo:SO_0000195c |
| URI | http://purl.obolibrary.org/obo/SO_0000203 |
|---|---|
| Super-classes |
obo:SO_0000836c |
| Sub-classes |
obo:SO_0000241c obo:SO_0000205c obo:SO_0000242c obo:SO_0000204c |
| URI | http://purl.obolibrary.org/obo/SO_0000204 |
|---|---|
| Super-classes |
obo:SO_0000203c |
| URI | http://purl.obolibrary.org/obo/SO_0000205 |
|---|---|
| Super-classes |
obo:SO_0000203c |
| URI | http://purl.obolibrary.org/obo/SO_0000206 |
|---|---|
| Super-classes |
obo:SO_0000189c |
| Sub-classes |
obo:SO_0002274c obo:SO_0002276c obo:SO_0002275c |
| URI | http://purl.obolibrary.org/obo/SO_0000207 |
|---|---|
| Super-classes |
obo:SO_0000248c |
| URI | http://purl.obolibrary.org/obo/SO_0000208 |
|---|---|
| Super-classes |
obo:SO_0000182c |
| Sub-classes |
obo:SO_0001535c obo:SO_0002285c obo:SO_0002284c obo:SO_0002281c obo:SO_0002278c obo:SO_0002283c obo:SO_0002279c obo:SO_0002282c obo:SO_0000973c obo:SO_0001170c obo:SO_0000338c obo:SO_0002280c |
| URI | http://purl.obolibrary.org/obo/SO_0000209 |
|---|---|
| Super-classes |
obo:SO_0000483c |
| Sub-classes |
obo:SO_0000325c obo:SO_0000255c |
| URI | http://purl.obolibrary.org/obo/SO_0000210 |
|---|---|
| Super-classes |
obo:SO_0000483c |
| Sub-classes |
obo:SO_0000214c obo:SO_0002037c obo:SO_0000218c obo:SO_0000221c obo:SO_0005856c obo:SO_0000213c obo:SO_0000229c obo:SO_0000219c obo:SO_0001178c obo:SO_0000230c obo:SO_0000215c obo:SO_0000212c obo:SO_0000224c obo:SO_0000225c obo:SO_0000216c obo:SO_0000217c obo:SO_0000228c obo:SO_0000222c obo:SO_0000211c obo:SO_0000227c obo:SO_0000223c obo:SO_0000220c obo:SO_0000226c |
| URI | http://purl.obolibrary.org/obo/SO_0000211 |
|---|---|
| Super-classes |
obo:SO_0000210c |
| URI | http://purl.obolibrary.org/obo/SO_0000212 |
|---|---|
| Super-classes |
obo:SO_0000210c |
| URI | http://purl.obolibrary.org/obo/SO_0000213 |
|---|---|
| Super-classes |
obo:SO_0000210c |
| URI | http://purl.obolibrary.org/obo/SO_0000214 |
|---|---|
| Super-classes |
obo:SO_0000210c |
| URI | http://purl.obolibrary.org/obo/SO_0000215 |
|---|---|
| Super-classes |
obo:SO_0000210c |
| URI | http://purl.obolibrary.org/obo/SO_0000216 |
|---|---|
| Super-classes |
obo:SO_0000210c |
| URI | http://purl.obolibrary.org/obo/SO_0000217 |
|---|---|
| Super-classes |
obo:SO_0000210c |
| URI | http://purl.obolibrary.org/obo/SO_0000218 |
|---|---|
| Super-classes |
obo:SO_0000210c |
| URI | http://purl.obolibrary.org/obo/SO_0000219 |
|---|---|
| Super-classes |
obo:SO_0000210c |
| URI | http://purl.obolibrary.org/obo/SO_0000220 |
|---|---|
| Super-classes |
obo:SO_0000210c |
| URI | http://purl.obolibrary.org/obo/SO_0000221 |
|---|---|
| Super-classes |
obo:SO_0000210c |
| URI | http://purl.obolibrary.org/obo/SO_0000222 |
|---|---|
| Super-classes |
obo:SO_0000210c |
| URI | http://purl.obolibrary.org/obo/SO_0000223 |
|---|---|
| Super-classes |
obo:SO_0000210c |
| URI | http://purl.obolibrary.org/obo/SO_0000224 |
|---|---|
| Super-classes |
obo:SO_0000210c |
| URI | http://purl.obolibrary.org/obo/SO_0000225 |
|---|---|
| Super-classes |
obo:SO_0000210c |
| URI | http://purl.obolibrary.org/obo/SO_0000226 |
|---|---|
| Super-classes |
obo:SO_0000210c |
| URI | http://purl.obolibrary.org/obo/SO_0000227 |
|---|---|
| Super-classes |
obo:SO_0000210c |
| URI | http://purl.obolibrary.org/obo/SO_0000228 |
|---|---|
| Super-classes |
obo:SO_0000210c |
| URI | http://purl.obolibrary.org/obo/SO_0000229 |
|---|---|
| Super-classes |
obo:SO_0000210c |
| URI | http://purl.obolibrary.org/obo/SO_0000230 |
|---|---|
| Super-classes |
obo:SO_0000210c |
| URI | http://purl.obolibrary.org/obo/SO_0000231 |
|---|---|
| Super-classes |
obo:SO_0000483c |
| URI | http://purl.obolibrary.org/obo/SO_0000232 |
|---|---|
| Description |
This definition was broadened 26 Jan 2021 to reflect that a single transcript can encode one or more snoRNAs. Brought to our attention by FlyBase. GitHub Issue #520 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/520). |
| Super-classes |
obo:SO_0000483c |
| Sub-classes |
obo:SO_0002034c obo:SO_0005837c obo:SO_0000596c obo:SO_0000595c obo:SO_0000582c obo:SO_0000580c |
| URI | http://purl.obolibrary.org/obo/SO_0000233 |
|---|---|
| Description |
A processed transcript cannot contain introns. |
| Super-classes |
obo:SO_0000673c |
| Restrictions |
so:derives_fromop some obo:SO_0000185c |
| Sub-classes |
obo:SO_0000234c obo:SO_0000655c |
| URI | http://purl.obolibrary.org/obo/SO_0000234 |
|---|---|
| Description |
An mRNA does not contain introns as it is a processed_transcript. The equivalent kind of primary_transcript is protein_coding_primary_transcript (SO:0000120) which may contain introns. This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0000233c |
| Sub-classes |
obo:SO_0000108c obo:SO_0000634c obo:SO_0002292c obo:SO_0002130c obo:SO_0000995c obo:SO_0000862c obo:SO_0000872c obo:SO_0000734c obo:SO_0000929c obo:SO_1001261c obo:SO_0000633c obo:SO_0000871c |
| URI | http://purl.obolibrary.org/obo/SO_0000235 |
|---|---|
| Description |
Definition updated along with definitions in Mejia-Almonte et.al PMID:32665585. Added relationship part_of SO:0000727 CRM in place of previous CRM relationship has_part TF_binding_site August 2020 in response to requests from GREEKC initiative. Moved from transcription_regulatory_region (SO:0001679) to transcriptional_cis_regulatory_region (SO:0001055) by Dave Sant on Feb 11, 2021 when transcription_regulatory_region was merged into transcriptional_cis_regulatory_region to be consistent with GO and reduce redundancy as part of the GREEKC consortium. See GitHub Issue #527. |
| Super-classes |
obo:SO_0001654c obo:SO_0001055c |
| Restrictions |
so:part_ofop some obo:SO_0000727c |
| Sub-classes |
obo:SO_0001840c obo:SO_0002045c obo:SO_0001715c obo:SO_0001653c obo:SO_0002295c |
| URI | http://purl.obolibrary.org/obo/SO_0000236 |
|---|---|
| Description |
The definition was modified by Rama. ORF is defined by the sequence, whereas the CDS is defined according to whether a polypeptide is made. This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0000717c |
| Sub-classes |
obo:SO_0002028c obo:SO_0002027c obo:SO_0000815c obo:SO_0002029c |
| URI | http://purl.obolibrary.org/obo/SO_0000237 |
|---|---|
| Super-classes |
obo:SO_0000733c |
| Sub-classes |
obo:SO_0000146c obo:SO_0000116c obo:SO_0000878c obo:SO_0000863c obo:SO_0000877c obo:SO_0000870c obo:SO_0000880c |
| URI | http://purl.obolibrary.org/obo/SO_0000238 |
|---|---|
| Super-classes |
obo:SO_0000182c |
| URI | http://purl.obolibrary.org/obo/SO_0000239 |
|---|---|
| Super-classes |
obo:SO_0001412c |
| Sub-classes |
obo:SO_0001417c obo:SO_0000364c obo:SO_0001416c |
| URI | http://purl.obolibrary.org/obo/SO_0000240 |
|---|---|
| Super-classes |
obo:SO_0001507c |
| Restrictions |
so:part_ofop some obo:SO_0001524c |
| Sub-classes |
obo:SO_1000182c obo:SO_0001504c obo:SO_1000183c |
| URI | http://purl.obolibrary.org/obo/SO_0000241 |
|---|---|
| Super-classes |
obo:SO_0000203c |
| URI | http://purl.obolibrary.org/obo/SO_0000242 |
|---|---|
| Super-classes |
obo:SO_0000203c |
| URI | http://purl.obolibrary.org/obo/SO_0000243 |
|---|---|
| Super-classes |
obo:SO_0000139c |
| Sub-classes |
obo:SO_1001260c |
| URI | http://purl.obolibrary.org/obo/SO_0000246 |
|---|---|
| Super-classes |
obo:SO_0000863c |
| URI | http://purl.obolibrary.org/obo/SO_0000248 |
|---|---|
| Super-classes |
obo:SO_0001059c |
| Sub-classes |
obo:SO_0001019c obo:SO_0000207c obo:SO_0002096c |
| URI | http://purl.obolibrary.org/obo/SO_0000250 |
|---|---|
| Super-classes |
obo:SO_0001236c |
| Sub-classes |
obo:SO_0001275c obo:SO_0001273c obo:SO_0001230c obo:SO_0001277c obo:SO_0001276c obo:SO_0001231c obo:SO_0001232c |
| URI | http://purl.obolibrary.org/obo/SO_0000252 |
|---|---|
| Super-classes |
obo:SO_0000655c |
| Restrictions |
so:derives_fromop some obo:SO_0000209c |
| Sub-classes |
obo:SO_0002128c obo:SO_0000650c obo:SO_0000651c |
| URI | http://purl.obolibrary.org/obo/SO_0000253 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0002247c |
| Restrictions |
so:derives_fromop some obo:SO_0000210c |
| Sub-classes |
obo:SO_0000267c obo:SO_0000262c obo:SO_0000271c obo:SO_0000261c obo:SO_0000257c obo:SO_0000766c obo:SO_0000254c obo:SO_0000266c obo:SO_0000256c obo:SO_0000265c obo:SO_0000263c obo:SO_0001036c obo:SO_0000269c obo:SO_0000259c obo:SO_0002129c obo:SO_0000273c obo:SO_0000272c obo:SO_0000264c obo:SO_0000260c obo:SO_0000270c obo:SO_0005857c obo:SO_0000258c obo:SO_0000268c |
| URI | http://purl.obolibrary.org/obo/SO_0000254 |
|---|---|
| Super-classes |
obo:SO_0000253c |
| Restrictions |
so:derives_fromop some obo:SO_0000211c |
| URI | http://purl.obolibrary.org/obo/SO_0000255 |
|---|---|
| Super-classes |
obo:SO_0000209c |
| URI | http://purl.obolibrary.org/obo/SO_0000256 |
|---|---|
| Super-classes |
obo:SO_0000253c |
| Restrictions |
so:derives_fromop some obo:SO_0000213c |
| URI | http://purl.obolibrary.org/obo/SO_0000257 |
|---|---|
| Super-classes |
obo:SO_0000253c |
| Restrictions |
so:derives_fromop some obo:SO_0000214c |
| URI | http://purl.obolibrary.org/obo/SO_0000258 |
|---|---|
| Super-classes |
obo:SO_0000253c |
| Restrictions |
so:derives_fromop some obo:SO_0000215c |
| URI | http://purl.obolibrary.org/obo/SO_0000259 |
|---|---|
| Super-classes |
obo:SO_0000253c |
| Restrictions |
so:derives_fromop some obo:SO_0000216c |
| URI | http://purl.obolibrary.org/obo/SO_0000260 |
|---|---|
| Super-classes |
obo:SO_0000253c |
| Restrictions |
so:derives_fromop some obo:SO_0000217c |
| URI | http://purl.obolibrary.org/obo/SO_0000261 |
|---|---|
| Super-classes |
obo:SO_0000253c |
| Restrictions |
so:derives_fromop some obo:SO_0000218c |
| URI | http://purl.obolibrary.org/obo/SO_0000262 |
|---|---|
| Super-classes |
obo:SO_0000253c |
| Restrictions |
so:derives_fromop some obo:SO_0000219c |
| URI | http://purl.obolibrary.org/obo/SO_0000263 |
|---|---|
| Super-classes |
obo:SO_0000253c |
| Restrictions |
so:derives_fromop some obo:SO_0000220c |
| URI | http://purl.obolibrary.org/obo/SO_0000264 |
|---|---|
| Super-classes |
obo:SO_0000253c |
| Restrictions |
so:derives_fromop some obo:SO_0000221c |
| URI | http://purl.obolibrary.org/obo/SO_0000265 |
|---|---|
| Super-classes |
obo:SO_0000253c |
| Restrictions |
so:derives_fromop some obo:SO_0000222c |
| URI | http://purl.obolibrary.org/obo/SO_0000266 |
|---|---|
| Super-classes |
obo:SO_0000253c |
| Restrictions |
so:derives_fromop some obo:SO_0000223c |
| URI | http://purl.obolibrary.org/obo/SO_0000267 |
|---|---|
| Super-classes |
obo:SO_0000253c |
| Restrictions |
so:derives_fromop some obo:SO_0000224c |
| URI | http://purl.obolibrary.org/obo/SO_0000268 |
|---|---|
| Super-classes |
obo:SO_0000253c |
| Restrictions |
so:derives_fromop some obo:SO_0000225c |
| URI | http://purl.obolibrary.org/obo/SO_0000269 |
|---|---|
| Super-classes |
obo:SO_0000253c |
| Restrictions |
so:derives_fromop some obo:SO_0000226c |
| URI | http://purl.obolibrary.org/obo/SO_0000270 |
|---|---|
| Super-classes |
obo:SO_0000253c |
| Restrictions |
so:derives_fromop some obo:SO_0000227c |
| URI | http://purl.obolibrary.org/obo/SO_0000271 |
|---|---|
| Super-classes |
obo:SO_0000253c |
| Restrictions |
so:derives_fromop some obo:SO_0000228c |
| URI | http://purl.obolibrary.org/obo/SO_0000272 |
|---|---|
| Super-classes |
obo:SO_0000253c |
| Restrictions |
so:derives_fromop some obo:SO_0000229c |
| URI | http://purl.obolibrary.org/obo/SO_0000273 |
|---|---|
| Super-classes |
obo:SO_0000253c |
| Restrictions |
so:derives_fromop some obo:SO_0000230c |
| URI | http://purl.obolibrary.org/obo/SO_0000274 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0002247c |
| Restrictions |
so:derives_fromop some obo:SO_0000231c |
| Sub-classes |
obo:SO_0000393c obo:SO_0000397c obo:SO_0000395c obo:SO_0000399c obo:SO_0000391c obo:SO_0000394c obo:SO_0002338c obo:SO_0000392c obo:SO_0000398c obo:SO_0000396c |
| URI | http://purl.obolibrary.org/obo/SO_0000275 |
|---|---|
| Super-classes |
obo:SO_0002247c |
| Restrictions |
so:derives_fromop some obo:SO_0000232c |
| Sub-classes |
obo:SO_0002095c obo:SO_0000593c obo:SO_0000594c |
| URI | http://purl.obolibrary.org/obo/SO_0000276 |
|---|---|
| Super-classes |
obo:SO_0000370c |
| Restrictions |
so:part_ofop some obo:SO_0001244c |
| Sub-classes |
obo:SO_0002166c obo:SO_0002167c |
| URI | http://purl.obolibrary.org/obo/SO_0000277 |
|---|---|
| Description |
Formerly called transcript_by_bound_factor. |
| Super-classes |
obo:SO_0000733c |
| Sub-classes |
obo:SO_0000875c obo:SO_0000876c |
| URI | http://purl.obolibrary.org/obo/SO_0000278 |
|---|---|
| Description |
Formerly called transcript_by_bound_nucleic_acid. |
| Super-classes |
obo:SO_0000673c |
| Restrictions |
so:has_qualityop some obo:SO_0000876c |
| URI | http://purl.obolibrary.org/obo/SO_0000279 |
|---|---|
| Description |
Formerly called transcript_by_bound_protein. |
| Super-classes |
obo:SO_0000673c |
| Restrictions |
so:has_qualityop some obo:SO_0000875c |
| URI | http://purl.obolibrary.org/obo/SO_0000280 |
|---|---|
| Super-classes |
obo:SO_0000704c obo:SO_0000804c |
| Restrictions |
so:has_qualityop some obo:SO_0000783c |
| Sub-classes |
obo:SO_0000288c obo:SO_0000281c |
| URI | http://purl.obolibrary.org/obo/SO_0000281 |
|---|---|
| Super-classes |
obo:SO_0000285c obo:SO_0000805c obo:SO_0000280c |
| Restrictions |
so:has_qualityop some obo:SO_0000784c so:has_qualityop some obo:SO_0000783c |
| Sub-classes |
obo:SO_0000283c |
| URI | http://purl.obolibrary.org/obo/SO_0000282 |
|---|---|
| Super-classes |
obo:SO_0000108c |
| Restrictions |
so:has_qualityop some obo:SO_0000866c |
| URI | http://purl.obolibrary.org/obo/SO_0000283 |
|---|---|
| Super-classes |
obo:SO_0000111c obo:SO_0000281c |
| Restrictions |
so:has_qualityop some obo:SO_0000783c so:has_qualityop some obo:SO_0000784c |
| URI | http://purl.obolibrary.org/obo/SO_0000285 |
|---|---|
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:has_qualityop some obo:SO_0000784c |
| Sub-classes |
obo:SO_0000281c |
| URI | http://purl.obolibrary.org/obo/SO_0000286 |
|---|---|
| Super-classes |
obo:SO_0000657c |
| Restrictions |
so:part_ofop some obo:SO_0000186c |
| Sub-classes |
obo:SO_0000426c obo:SO_0001003c obo:SO_0000425c |
| URI | http://purl.obolibrary.org/obo/SO_0000287 |
|---|---|
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:has_qualityop some obo:SO_0000806c |
| Sub-classes |
obo:SO_0000288c |
| URI | http://purl.obolibrary.org/obo/SO_0000288 |
|---|---|
| Super-classes |
obo:SO_0000280c obo:SO_0000287c |
| Restrictions |
so:has_qualityop some obo:SO_0000783c |
| URI | http://purl.obolibrary.org/obo/SO_0000289 |
|---|---|
| Super-classes |
obo:SO_0000005c |
| Sub-classes |
obo:SO_0000641c obo:SO_0000290c obo:SO_0000291c |
| URI | http://purl.obolibrary.org/obo/SO_0000290 |
|---|---|
| Super-classes |
obo:SO_0000289c |
| Sub-classes |
obo:SO_0001862c |
| URI | http://purl.obolibrary.org/obo/SO_0000291 |
|---|---|
| Super-classes |
obo:SO_0000289c |
| Sub-classes |
obo:SO_0001863c |
| URI | http://purl.obolibrary.org/obo/SO_0000293 |
|---|---|
| Super-classes |
obo:SO_0000805c obo:SO_0000657c |
| Restrictions |
so:has_qualityop some obo:SO_0000783c so:has_qualityop some obo:SO_0000784c |
| URI | http://purl.obolibrary.org/obo/SO_0000294 |
|---|---|
| Super-classes |
obo:SO_0000657c |
| Sub-classes |
obo:SO_0000481c |
| URI | http://purl.obolibrary.org/obo/SO_0000295 |
|---|---|
| Description |
May have either GT-AC or AT-AC 5' and 3' boundaries. |
| Super-classes |
obo:SO_0000662c |
| URI | http://purl.obolibrary.org/obo/SO_0000296 |
|---|---|
| Super-classes |
obo:SO_0001411c |
| Restrictions |
so:part_ofop some obo:SO_0001235c |
| Sub-classes |
obo:SO_0000953c obo:SO_0002171c obo:SO_0002141c obo:SO_0000750c obo:SO_0002140c obo:SO_0002203c obo:SO_0000436c obo:SO_0002293c obo:SO_0000952c obo:SO_0000724c |
| URI | http://purl.obolibrary.org/obo/SO_0000297 |
|---|---|
| Description |
Moved from is_a: SO:0000296 origin_of_replication to is_a: SO:0001411 biological_region after Terrence Murphy (INSDC) pointed out that the D loop can also refer to a loop in DNA repair, which is not an origin of replication. See GitHub Issue #417 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/417) |
| Super-classes |
obo:SO_0001411c |
| Sub-classes |
obo:SO_0002294c |
| URI | http://purl.obolibrary.org/obo/SO_0000298 |
|---|---|
| Super-classes |
obo:SO_0001411c |
| Sub-classes |
obo:SO_0000669c obo:SO_0002154c obo:SO_0002155c obo:SO_0000723c obo:SO_0000339c obo:SO_0000355c |
| URI | http://purl.obolibrary.org/obo/SO_0000299 |
|---|---|
| Super-classes |
obo:SO_0000669c |
| Sub-classes |
obo:SO_0001532c obo:SO_0000342c obo:SO_0000300c |
| URI | http://purl.obolibrary.org/obo/SO_0000300 |
|---|---|
| Super-classes |
obo:SO_0000299c |
| Sub-classes |
obo:SO_0000301c |
| URI | http://purl.obolibrary.org/obo/SO_0000301 |
|---|---|
| Super-classes |
obo:SO_0000300c |
| Sub-classes |
obo:SO_0000460c obo:SO_0001836c obo:SO_0001835c obo:SO_0000939c obo:SO_0000938c obo:SO_0000482c obo:SO_0000936c obo:SO_0000563c |
| URI | http://purl.obolibrary.org/obo/SO_0000302 |
|---|---|
| Super-classes |
obo:SO_0000939c |
| URI | http://purl.obolibrary.org/obo/SO_0000303 |
|---|---|
| Super-classes |
obo:SO_0000835c |
| Sub-classes |
obo:SO_0000557c obo:SO_0000555c |
| URI | http://purl.obolibrary.org/obo/SO_0000305 |
|---|---|
| Description |
Modified base: |
| Super-classes |
obo:SO_0001720c obo:SO_0001236c |
| Sub-classes |
obo:SO_0001964c obo:SO_0001963c obo:SO_0000306c obo:SO_0001962c |
| URI | http://purl.obolibrary.org/obo/SO_0000306 |
|---|---|
| Super-classes |
obo:SO_0000305c |
| Sub-classes |
obo:SO_0000161c obo:SO_0000114c |
| URI | http://purl.obolibrary.org/obo/SO_0000307 |
|---|---|
| Super-classes |
obo:SO_0001411c |
| URI | http://purl.obolibrary.org/obo/SO_0000311 |
|---|---|
| Description |
similar to: |
| URI | http://purl.obolibrary.org/obo/SO_0000312 |
|---|---|
| Super-classes |
obo:SO_0000789c |
| URI | http://purl.obolibrary.org/obo/SO_0000313 |
|---|---|
| Super-classes |
obo:SO_0000122c |
| Sub-classes |
obo:SO_0001008c |
| URI | http://purl.obolibrary.org/obo/SO_0000314 |
|---|---|
| Super-classes |
obo:SO_0000657c |
| Sub-classes |
obo:SO_0001459c obo:SO_0000434c |
| URI | http://purl.obolibrary.org/obo/SO_0000315 |
|---|---|
| Description |
Added relationship is_a SO:0002309 core_promoter_element with the creation of core_promoter_element as part of GREEKC initiative August 2020 - Dave Sant. |
| Super-classes |
obo:SO_0002309c obo:SO_0000835c |
| Sub-classes |
obo:SO_0001238c obo:SO_0001239c |
| URI | http://purl.obolibrary.org/obo/SO_0000316 |
|---|---|
| Super-classes |
obo:SO_0000836c |
| Sub-classes |
obo:SO_0000935c obo:SO_0002227c obo:SO_0001896c obo:SO_1001246c obo:SO_1001254c obo:SO_0001384c |
| URI | http://purl.obolibrary.org/obo/SO_0000317 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0000151c |
| Restrictions |
so:has_qualityop some obo:SO_0000756c |
| Sub-classes |
obo:SO_0000808c obo:SO_0001433c obo:SO_0000809c |
| URI | http://purl.obolibrary.org/obo/SO_0000318 |
|---|---|
| Super-classes |
obo:SO_0000360c |
| Sub-classes |
obo:SO_0000680c |
| URI | http://purl.obolibrary.org/obo/SO_0000319 |
|---|---|
| Super-classes |
obo:SO_0000360c |
| Sub-classes |
obo:SO_0002334c obo:SO_0002335c obo:SO_0002333c |
| URI | http://purl.obolibrary.org/obo/SO_0000320 |
|---|---|
| Super-classes |
obo:SO_0000344c |
| Restrictions |
so:part_ofop some obo:SO_0000841c |
| URI | http://purl.obolibrary.org/obo/SO_0000321 |
|---|---|
| Super-classes |
obo:SO_0000108c |
| Restrictions |
so:has_qualityop some obo:SO_0000868c |
| URI | http://purl.obolibrary.org/obo/SO_0000322 |
|---|---|
| Description |
Relationship to accessible_DNA_region added 11 Feb 2021. GREEKC pointed out that this is an assay based term, but we need a biological term for the accessible DNA. See GitHub Issue #531. |
| Super-classes |
obo:SO_0000684c obo:SO_0002331c |
| Sub-classes |
obo:SO_0000685c |
| URI | http://purl.obolibrary.org/obo/SO_0000323 |
|---|---|
| Super-classes |
obo:SO_0000851c |
| URI | http://purl.obolibrary.org/obo/SO_0000324 |
|---|---|
| Super-classes |
obo:SO_0000696c |
| Sub-classes |
obo:SO_0001916c obo:SO_0000326c obo:SO_0000331c obo:SO_0000345c obo:SO_0002023c obo:SO_0000807c |
| URI | http://purl.obolibrary.org/obo/SO_0000325 |
|---|---|
| Super-classes |
obo:SO_0000209c |
| URI | http://purl.obolibrary.org/obo/SO_0000326 |
|---|---|
| Super-classes |
obo:SO_0000324c |
| URI | http://purl.obolibrary.org/obo/SO_0000327 |
|---|---|
| Super-classes |
obo:SO_0000851c |
| URI | http://purl.obolibrary.org/obo/SO_0000328 |
|---|---|
| Super-classes |
obo:SO_0000051c |
| URI | http://purl.obolibrary.org/obo/SO_0000329 |
|---|---|
| Super-classes |
obo:SO_0000108c |
| Restrictions |
so:has_qualityop some obo:SO_0000869c |
| URI | http://purl.obolibrary.org/obo/SO_0000330 |
|---|---|
| Super-classes |
obo:SO_0001410c |
| Sub-classes |
obo:SO_0001495c obo:SO_0005858c obo:SO_0001493c obo:SO_0001788c obo:SO_0000435c obo:SO_0001796c obo:SO_0000332c obo:SO_0000334c obo:SO_0000853c obo:SO_0001494c obo:SO_0001497c |
| URI | http://purl.obolibrary.org/obo/SO_0000331 |
|---|---|
| Super-classes |
obo:SO_0000324c |
| URI | http://purl.obolibrary.org/obo/SO_0000332 |
|---|---|
| Super-classes |
obo:SO_0000330c |
| URI | http://purl.obolibrary.org/obo/SO_0000333 |
|---|---|
| Super-classes |
obo:SO_0000699c |
| Restrictions |
so:part_ofop some obo:SO_0000233c |
| URI | http://purl.obolibrary.org/obo/SO_0000334 |
|---|---|
| Super-classes |
obo:SO_0000330c |
| URI | http://purl.obolibrary.org/obo/SO_0000335 |
|---|---|
| Super-classes |
obo:SO_0000108c |
| Restrictions |
so:has_qualityop some obo:SO_0000867c |
| URI | http://purl.obolibrary.org/obo/SO_0000336 |
|---|---|
| Super-classes |
obo:SO_0001411c |
| Restrictions |
so:non_functional_homolog_ofop some obo:SO_0000704c |
| Sub-classes |
obo:SO_0001760c obo:SO_0002097c obo:SO_0001897c obo:SO_0000043c obo:SO_0001841c |
| URI | http://purl.obolibrary.org/obo/SO_0000337 |
|---|---|
| Super-classes |
obo:SO_0000442c |
| URI | http://purl.obolibrary.org/obo/SO_0000338 |
|---|---|
| Super-classes |
obo:SO_0000208c |
| URI | http://purl.obolibrary.org/obo/SO_0000339 |
|---|---|
| Super-classes |
obo:SO_0000298c |
| Sub-classes |
obo:SO_0002094c |
| URI | http://purl.obolibrary.org/obo/SO_0000340 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0001235c |
| Sub-classes |
obo:SO_0000823c obo:SO_0000961c obo:SO_0000821c obo:SO_0000954c obo:SO_0000820c obo:SO_0000822c obo:SO_0000829c obo:SO_0000819c obo:SO_0000828c obo:SO_0000824c obo:SO_0000825c obo:SO_0001259c |
| URI | http://purl.obolibrary.org/obo/SO_0000341 |
|---|---|
| Super-classes |
obo:SO_0000830c |
| URI | http://purl.obolibrary.org/obo/SO_0000342 |
|---|---|
| Super-classes |
obo:SO_0000299c |
| Sub-classes |
obo:SO_0001048c obo:SO_0000946c obo:SO_0000947c obo:SO_0000948c |
| URI | http://purl.obolibrary.org/obo/SO_0000343 |
|---|---|
| Super-classes |
obo:SO_0001410c |
| Sub-classes |
obo:SO_0000349c obo:SO_0000347c |
| URI | http://purl.obolibrary.org/obo/SO_0000344 |
|---|---|
| Super-classes |
obo:SO_0001056c |
| Sub-classes |
obo:SO_0000683c obo:SO_0000320c |
| URI | http://purl.obolibrary.org/obo/SO_0000345 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0000324c |
| Restrictions |
so:derives_fromop some obo:SO_0000234c |
| Sub-classes |
obo:SO_0001467c obo:SO_0001209c obo:SO_0001208c obo:SO_0001464c |
| URI | http://purl.obolibrary.org/obo/SO_0000346 |
|---|---|
| Super-classes |
obo:SO_0000947c |
| URI | http://purl.obolibrary.org/obo/SO_0000347 |
|---|---|
| Super-classes |
obo:SO_0000343c |
| Sub-classes |
obo:SO_0001472c obo:SO_0000102c obo:SO_0000181c obo:SO_0000177c |
| URI | http://purl.obolibrary.org/obo/SO_0000348 |
|---|---|
| Super-classes |
obo:SO_0000443c |
| Sub-classes |
obo:SO_0001188c obo:SO_0000356c obo:SO_0000352c obo:SO_0001190c obo:SO_0001183c obo:SO_0001192c obo:SO_0001184c |
| URI | http://purl.obolibrary.org/obo/SO_0000349 |
|---|---|
| Super-classes |
obo:SO_0000343c |
| Sub-classes |
obo:SO_0001831c |
| URI | http://purl.obolibrary.org/obo/SO_0000350 |
|---|---|
| Super-classes |
obo:SO_0000948c |
| URI | http://purl.obolibrary.org/obo/SO_0000351 |
|---|---|
| Super-classes |
obo:SO_0000443c |
| Sub-classes |
obo:SO_0000449c obo:SO_0000546c |
| URI | http://purl.obolibrary.org/obo/SO_0000352 |
|---|---|
| Super-classes |
obo:SO_0000348c |
| Sub-classes |
obo:SO_0000756c obo:SO_0000991c |
| URI | http://purl.obolibrary.org/obo/SO_0000353 |
|---|---|
| Super-classes |
obo:SO_0001248c |
| Sub-classes |
obo:SO_0001876c obo:SO_0000688c obo:SO_0000149c obo:SO_0001428c obo:SO_0000499c obo:SO_0000472c |
| URI | http://purl.obolibrary.org/obo/SO_0000354 |
|---|---|
| Super-classes |
obo:SO_0000684c |
| URI | http://purl.obolibrary.org/obo/SO_0000355 |
|---|---|
| Super-classes |
obo:SO_0000298c |
| URI | http://purl.obolibrary.org/obo/SO_0000356 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0000348c |
| URI | http://purl.obolibrary.org/obo/SO_0000357 |
|---|---|
| Super-classes |
obo:SO_0000733c |
| Sub-classes |
obo:SO_0000359c obo:SO_0000361c |
| URI | http://purl.obolibrary.org/obo/SO_0000359 |
|---|---|
| Super-classes |
obo:SO_0000357c |
| URI | http://purl.obolibrary.org/obo/SO_0000360 |
|---|---|
| Super-classes |
obo:SO_0000851c |
| Sub-classes |
obo:SO_0000145c obo:SO_0000319c obo:SO_0000318c |
| URI | http://purl.obolibrary.org/obo/SO_0000361 |
|---|---|
| Super-classes |
obo:SO_0000357c |
| URI | http://purl.obolibrary.org/obo/SO_0000362 |
|---|---|
| Super-classes |
obo:SO_0000790c |
| URI | http://purl.obolibrary.org/obo/SO_0000363 |
|---|---|
| Super-classes |
obo:SO_0000902c |
| Restrictions |
so:has_qualityop some obo:SO_0000359c |
| URI | http://purl.obolibrary.org/obo/SO_0000364 |
|---|---|
| Super-classes |
obo:SO_0000239c |
| URI | http://purl.obolibrary.org/obo/SO_0000365 |
|---|---|
| Super-classes |
obo:SO_0001039c |
| URI | http://purl.obolibrary.org/obo/SO_0000366 |
|---|---|
| Super-classes |
obo:SO_0000699c |
| Sub-classes |
obo:SO_0000368c |
| URI | http://purl.obolibrary.org/obo/SO_0000367 |
|---|---|
| Super-classes |
obo:SO_0000946c |
| Restrictions |
so:part_ofop some obo:SO_0000365c |
| URI | http://purl.obolibrary.org/obo/SO_0000368 |
|---|---|
| Super-classes |
obo:SO_0000366c |
| URI | http://purl.obolibrary.org/obo/SO_0000370 |
|---|---|
| Super-classes |
obo:SO_0002247c |
| Sub-classes |
obo:SO_0002032c obo:SO_0000376c obo:SO_0000388c obo:SO_0000584c obo:SO_0000646c obo:SO_0000389c obo:SO_0001035c obo:SO_0000387c obo:SO_0000276c obo:SO_0002033c obo:SO_0000377c obo:SO_0000384c obo:SO_0000378c |
| URI | http://purl.obolibrary.org/obo/SO_0000371 |
|---|---|
| Super-classes |
obo:SO_0000182c |
| URI | http://purl.obolibrary.org/obo/SO_0000372 |
|---|---|
| Description |
This was moved to be a child of transcript (SO:0000673) because some enzymatic RNA regions are part of primary transcripts and some are part of processed transcripts. |
| Super-classes |
obo:SO_0000673c |
| Restrictions |
so:has_qualityop some obo:SO_0001185c |
| Sub-classes |
obo:SO_0000374c |
| URI | http://purl.obolibrary.org/obo/SO_0000373 |
|---|---|
| Super-classes |
obo:SO_0000456c |
| Restrictions |
so:has_qualityop some obo:SO_1000036c |
| URI | http://purl.obolibrary.org/obo/SO_0000374 |
|---|---|
| Super-classes |
obo:SO_0000372c |
| Restrictions |
so:has_qualityop some obo:SO_0001186c |
| Sub-classes |
obo:SO_0002231c |
| URI | http://purl.obolibrary.org/obo/SO_0000375 |
|---|---|
| Description |
Dave Sant removed '5_8S rRNA is also found in archaea.' from definition due to lack of references mentioning this on 1 Feb 2021. See GitHub Issue #505. |
| Super-classes |
obo:SO_0000651c |
| URI | http://purl.obolibrary.org/obo/SO_0000376 |
|---|---|
| Super-classes |
obo:SO_0000370c |
| URI | http://purl.obolibrary.org/obo/SO_0000377 |
|---|---|
| Super-classes |
obo:SO_0000370c |
| URI | http://purl.obolibrary.org/obo/SO_0000378 |
|---|---|
| Super-classes |
obo:SO_0000370c |
| Sub-classes |
obo:SO_0000379c |
| URI | http://purl.obolibrary.org/obo/SO_0000379 |
|---|---|
| Super-classes |
obo:SO_0000378c |
| URI | http://purl.obolibrary.org/obo/SO_0000380 |
|---|---|
| Super-classes |
obo:SO_0000715c |
| Restrictions |
so:has_qualityop some obo:SO_0001186c |
| URI | http://purl.obolibrary.org/obo/SO_0000381 |
|---|---|
| Super-classes |
obo:SO_0000603c |
| URI | http://purl.obolibrary.org/obo/SO_0000382 |
|---|---|
| Super-classes |
obo:SO_0000603c |
| URI | http://purl.obolibrary.org/obo/SO_0000383 |
|---|---|
| Super-classes |
obo:SO_0000644c |
| URI | http://purl.obolibrary.org/obo/SO_0000384 |
|---|---|
| Super-classes |
obo:SO_0000370c |
| URI | http://purl.obolibrary.org/obo/SO_0000385 |
|---|---|
| Super-classes |
obo:SO_0000655c |
| URI | http://purl.obolibrary.org/obo/SO_0000386 |
|---|---|
| Super-classes |
obo:SO_0000655c |
| URI | http://purl.obolibrary.org/obo/SO_0000387 |
|---|---|
| Super-classes |
obo:SO_0000370c |
| URI | http://purl.obolibrary.org/obo/SO_0000388 |
|---|---|
| Super-classes |
obo:SO_0000370c |
| URI | http://purl.obolibrary.org/obo/SO_0000389 |
|---|---|
| Super-classes |
obo:SO_0000370c |
| URI | http://purl.obolibrary.org/obo/SO_0000390 |
|---|---|
| Super-classes |
obo:SO_0000655c |
| URI | http://purl.obolibrary.org/obo/SO_0000391 |
|---|---|
| Super-classes |
obo:SO_0000274c |
| URI | http://purl.obolibrary.org/obo/SO_0000392 |
|---|---|
| Super-classes |
obo:SO_0000274c |
| URI | http://purl.obolibrary.org/obo/SO_0000393 |
|---|---|
| Super-classes |
obo:SO_0000274c |
| URI | http://purl.obolibrary.org/obo/SO_0000394 |
|---|---|
| Super-classes |
obo:SO_0000274c |
| URI | http://purl.obolibrary.org/obo/SO_0000395 |
|---|---|
| Super-classes |
obo:SO_0000274c |
| URI | http://purl.obolibrary.org/obo/SO_0000396 |
|---|---|
| Super-classes |
obo:SO_0000274c |
| URI | http://purl.obolibrary.org/obo/SO_0000397 |
|---|---|
| Super-classes |
obo:SO_0000274c |
| URI | http://purl.obolibrary.org/obo/SO_0000398 |
|---|---|
| Super-classes |
obo:SO_0000274c |
| URI | http://purl.obolibrary.org/obo/SO_0000399 |
|---|---|
| Super-classes |
obo:SO_0000274c |
| URI | http://purl.obolibrary.org/obo/SO_0000400 |
|---|---|
| Sub-classes |
obo:SO_0000443c obo:SO_0000735c obo:SO_0001761c obo:SO_0000733c obo:SO_0002206c |
| URI | http://purl.obolibrary.org/obo/SO_0000401 |
|---|---|
| Super-classes |
obo:SO_0000733c |
| Sub-classes |
obo:SO_0000081c obo:SO_0000010c obo:SO_0000119c obo:SO_0000011c obo:SO_0001241c obo:SO_0000463c obo:SO_0000133c obo:SO_0000067c |
| URI | http://purl.obolibrary.org/obo/SO_0000403 |
|---|---|
| Description |
An evolutionarily conserved eukaryotic low molecular weight RNA capable of intermolecular hybridization with both homologous and heterologous 18S rRNA. |
| Super-classes |
obo:SO_0000593c |
| Restrictions |
so:derives_fromop some obo:SO_0005837c |
| URI | http://purl.obolibrary.org/obo/SO_0000404 |
|---|---|
| Super-classes |
obo:SO_0000655c |
| URI | http://purl.obolibrary.org/obo/SO_0000405 |
|---|---|
| Super-classes |
obo:SO_0000655c |
| URI | http://purl.obolibrary.org/obo/SO_0000406 |
|---|---|
| Super-classes |
obo:SO_0000188c |
| URI | http://purl.obolibrary.org/obo/SO_0000407 |
|---|---|
| Super-classes |
obo:SO_0000650c |
| URI | http://purl.obolibrary.org/obo/SO_0000409 |
|---|---|
| Description |
See GO:0005488 : binding. |
| Super-classes |
obo:SO_0001411c |
| Sub-classes |
obo:SO_0001656c obo:SO_0001018c obo:SO_0001655c obo:SO_0001657c obo:SO_0002233c obo:SO_0000410c |
| URI | http://purl.obolibrary.org/obo/SO_0000410 |
|---|---|
| Description |
See GO:0042277 : peptide binding. |
| Super-classes |
obo:SO_0000409c |
| Sub-classes |
obo:SO_0001093c obo:SO_0001654c |
| URI | http://purl.obolibrary.org/obo/SO_0000411 |
|---|---|
| Super-classes |
obo:SO_0000695c |
| Restrictions |
so:has_qualityop some obo:SO_0000814c |
| Sub-classes |
obo:SO_0000794c |
| URI | http://purl.obolibrary.org/obo/SO_0000412 |
|---|---|
| Super-classes |
obo:SO_0000143c |
| Sub-classes |
obo:SO_0000193c |
| URI | http://purl.obolibrary.org/obo/SO_0000413 |
|---|---|
| Super-classes |
obo:SO_0000700c |
| Sub-classes |
obo:SO_0000701c obo:SO_0001526c obo:SO_0002172c obo:SO_0000702c obo:SO_0001525c |
| URI | http://purl.obolibrary.org/obo/SO_0000414 |
|---|---|
| Super-classes |
obo:SO_0000790c |
| URI | http://purl.obolibrary.org/obo/SO_0000415 |
|---|---|
| Super-classes |
obo:SO_0000790c |
| URI | http://purl.obolibrary.org/obo/SO_0000416 |
|---|---|
| Super-classes |
obo:SO_0000790c |
| URI | http://purl.obolibrary.org/obo/SO_0000417 |
|---|---|
| Description |
Range. Old definition from before biosapiens: A region of a single polypeptide chain that folds into an independent unit and exhibits biological activity. A polypeptide chain may have multiple domains. |
| Super-classes |
obo:SO_0100021c obo:SO_0001070c |
| URI | http://purl.obolibrary.org/obo/SO_0000418 |
|---|---|
| Description |
Old def before biosapiens:The sequence for an N-terminal domain of a secreted protein; this domain is involved in attaching nascent polypeptide to the membrane leader sequence. |
| Super-classes |
obo:SO_0001527c |
| Restrictions |
so:derives_fromop some obo:SO_0002251c so:part_ofop some obo:SO_0001062c |
| Sub-classes |
obo:SO_0001809c |
| URI | http://purl.obolibrary.org/obo/SO_0000419 |
|---|---|
| Description |
This term mature peptide, merged with the biosapiens term mature protein region and took that to be the new name. Old def: The coding sequence for the mature or final peptide or protein product following post-translational modification. |
| Super-classes |
obo:SO_0000839c |
| Restrictions |
so:derives_fromop some obo:SO_0002249c so:part_ofop some obo:SO_0001063c |
| Sub-classes |
obo:SO_0001064c |
| URI | http://purl.obolibrary.org/obo/SO_0000420 |
|---|---|
| Super-classes |
obo:SO_0000481c |
| URI | http://purl.obolibrary.org/obo/SO_0000421 |
|---|---|
| Super-classes |
obo:SO_0000481c |
| URI | http://purl.obolibrary.org/obo/SO_0000422 |
|---|---|
| Super-classes |
obo:SO_0000848c |
| Sub-classes |
obo:SO_0000428c |
| URI | http://purl.obolibrary.org/obo/SO_0000423 |
|---|---|
| Super-classes |
obo:SO_0000848c |
| Sub-classes |
obo:SO_0000427c |
| URI | http://purl.obolibrary.org/obo/SO_0000424 |
|---|---|
| Super-classes |
obo:SO_0000848c |
| Sub-classes |
obo:SO_0000429c |
| URI | http://purl.obolibrary.org/obo/SO_0000425 |
|---|---|
| Super-classes |
obo:SO_0000286c |
| URI | http://purl.obolibrary.org/obo/SO_0000426 |
|---|---|
| Super-classes |
obo:SO_0000286c |
| URI | http://purl.obolibrary.org/obo/SO_0000427 |
|---|---|
| Super-classes |
obo:SO_0000850c obo:SO_0000423c |
| URI | http://purl.obolibrary.org/obo/SO_0000428 |
|---|---|
| Super-classes |
obo:SO_0000422c obo:SO_0000850c |
| URI | http://purl.obolibrary.org/obo/SO_0000429 |
|---|---|
| Super-classes |
obo:SO_0000424c obo:SO_0000850c |
| URI | http://purl.obolibrary.org/obo/SO_0000430 |
|---|---|
| Super-classes |
obo:SO_0000849c |
| URI | http://purl.obolibrary.org/obo/SO_0000431 |
|---|---|
| Super-classes |
obo:SO_0000849c |
| URI | http://purl.obolibrary.org/obo/SO_0000432 |
|---|---|
| Super-classes |
obo:SO_0000849c |
| URI | http://purl.obolibrary.org/obo/SO_0000433 |
|---|---|
| Super-classes |
obo:SO_0000657c obo:SO_0000840c |
| Restrictions |
so:part_ofop some obo:SO_0000189c |
| URI | http://purl.obolibrary.org/obo/SO_0000434 |
|---|---|
| Super-classes |
obo:SO_0000314c |
| Restrictions |
so:derives_fromop some obo:SO_0000101c |
| URI | http://purl.obolibrary.org/obo/SO_0000435 |
|---|---|
| Super-classes |
obo:SO_0000330c |
| Restrictions |
so:part_ofop some obo:SO_0000186c |
| URI | http://purl.obolibrary.org/obo/SO_0000436 |
|---|---|
| Super-classes |
obo:SO_0000296c |
| URI | http://purl.obolibrary.org/obo/SO_0000439 |
|---|---|
| Super-classes |
obo:SO_1000030c obo:SO_1000045c |
| URI | http://purl.obolibrary.org/obo/SO_0000440 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0001235c |
| Restrictions |
so:part_ofop some obo:SO_0000151c |
| Sub-classes |
obo:SO_0000158c obo:SO_0000157c obo:SO_0000754c obo:SO_0000154c obo:SO_0000755c obo:SO_0000156c obo:SO_0000153c obo:SO_0001644c obo:SO_0000152c |
| URI | http://purl.obolibrary.org/obo/SO_0000441 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0000696c |
| Sub-classes |
obo:SO_0000112c |
| URI | http://purl.obolibrary.org/obo/SO_0000442 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0000696c |
| Sub-classes |
obo:SO_0000337c obo:SO_0001009c |
| URI | http://purl.obolibrary.org/obo/SO_0000443 |
|---|---|
| Super-classes |
obo:SO_0000400c |
| Sub-classes |
obo:SO_0000351c obo:SO_0001407c obo:SO_0000986c obo:SO_0000348c |
| URI | http://purl.obolibrary.org/obo/SO_0000444 |
|---|---|
| Super-classes |
obo:SO_0000198c |
| URI | http://purl.obolibrary.org/obo/SO_0000445 |
|---|---|
| Super-classes |
obo:SO_0000198c |
| URI | http://purl.obolibrary.org/obo/SO_0000446 |
|---|---|
| Super-classes |
obo:SO_0000188c |
| Sub-classes |
obo:SO_0000447c obo:SO_0000448c |
| URI | http://purl.obolibrary.org/obo/SO_0000447 |
|---|---|
| Super-classes |
obo:SO_0000446c |
| URI | http://purl.obolibrary.org/obo/SO_0000448 |
|---|---|
| Super-classes |
obo:SO_0000446c |
| URI | http://purl.obolibrary.org/obo/SO_0000449 |
|---|---|
| Super-classes |
obo:SO_0000351c |
| URI | http://purl.obolibrary.org/obo/SO_0000450 |
|---|---|
| Super-classes |
obo:SO_0000830c |
| URI | http://purl.obolibrary.org/obo/SO_0000451 |
|---|---|
| Super-classes |
obo:SO_0001217c |
| Restrictions |
so:transcribed_toop some obo:SO_0000871c |
| URI | http://purl.obolibrary.org/obo/SO_0000453 |
|---|---|
| Super-classes |
obo:SO_1000183c |
| Sub-classes |
obo:SO_1000155c obo:SO_1000041c |
| URI | http://purl.obolibrary.org/obo/SO_0000454 |
|---|---|
| Super-classes |
obo:SO_0000655c |
| URI | http://purl.obolibrary.org/obo/SO_0000455 |
|---|---|
| Super-classes |
obo:SO_0001217c |
| Restrictions |
so:has_qualityop some obo:SO_0000865c |
| URI | http://purl.obolibrary.org/obo/SO_0000456 |
|---|---|
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:has_qualityop some obo:SO_0000940c |
| Sub-classes |
obo:SO_0000941c obo:SO_0000373c |
| URI | http://purl.obolibrary.org/obo/SO_0000457 |
|---|---|
| Super-classes |
obo:SO_1000037c |
| URI | http://purl.obolibrary.org/obo/SO_0000458 |
|---|---|
| Super-classes |
obo:SO_0000460c |
| URI | http://purl.obolibrary.org/obo/SO_0000459 |
|---|---|
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:transcribed_toop some obo:SO_0000479c |
| URI | http://purl.obolibrary.org/obo/SO_0000460 |
|---|---|
| Description |
I am using the term segment instead of gene here to avoid confusion with the region 'gene'. |
| Super-classes |
obo:SO_0000301c |
| Sub-classes |
obo:SO_0000458c obo:SO_0000470c obo:SO_0000466c obo:SO_0000478c |
| URI | http://purl.obolibrary.org/obo/SO_0000461 |
|---|---|
| Super-classes |
obo:SO_1000029c |
| URI | http://purl.obolibrary.org/obo/SO_0000462 |
|---|---|
| Super-classes |
obo:SO_0001411c |
| Sub-classes |
obo:SO_0000464c obo:SO_0000507c obo:SO_0000516c obo:SO_0002087c |
| URI | http://purl.obolibrary.org/obo/SO_0000463 |
|---|---|
| Super-classes |
obo:SO_0000401c |
| Sub-classes |
obo:SO_1001188c obo:SO_1001189c |
| URI | http://purl.obolibrary.org/obo/SO_0000464 |
|---|---|
| Description |
Does not have to be part of a pseudogene. |
| Super-classes |
obo:SO_0000462c |
| Restrictions |
so:non_functional_homolog_ofop some obo:SO_0000147c |
| URI | http://purl.obolibrary.org/obo/SO_0000465 |
|---|---|
| Super-classes |
obo:SO_1000038c obo:SO_1000029c |
| URI | http://purl.obolibrary.org/obo/SO_0000466 |
|---|---|
| Super-classes |
obo:SO_0000460c |
| URI | http://purl.obolibrary.org/obo/SO_0000467 |
|---|---|
| Super-classes |
obo:SO_0000130c |
| URI | http://purl.obolibrary.org/obo/SO_0000468 |
|---|---|
| Super-classes |
obo:SO_0000143c |
| Restrictions |
so:part_ofop some obo:SO_0000688c |
| URI | http://purl.obolibrary.org/obo/SO_0000469 |
|---|---|
| Super-classes |
obo:SO_0000130c |
| URI | http://purl.obolibrary.org/obo/SO_0000470 |
|---|---|
| Super-classes |
obo:SO_0000460c |
| URI | http://purl.obolibrary.org/obo/SO_0000471 |
|---|---|
| Super-classes |
obo:SO_0000123c |
| Sub-classes |
obo:SO_0000473c obo:SO_0000475c |
| URI | http://purl.obolibrary.org/obo/SO_0000472 |
|---|---|
| Super-classes |
obo:SO_0000353c |
| URI | http://purl.obolibrary.org/obo/SO_0000473 |
|---|---|
| Super-classes |
obo:SO_0000471c obo:SO_0000126c |
| URI | http://purl.obolibrary.org/obo/SO_0000474 |
|---|---|
| Super-classes |
obo:SO_0000143c |
| Restrictions |
so:part_ofop some obo:SO_0000472c |
| Sub-classes |
obo:SO_0000480c |
| URI | http://purl.obolibrary.org/obo/SO_0000475 |
|---|---|
| Super-classes |
obo:SO_0000125c obo:SO_0000471c |
| URI | http://purl.obolibrary.org/obo/SO_0000476 |
|---|---|
| Super-classes |
obo:SO_0000150c |
| URI | http://purl.obolibrary.org/obo/SO_0000478 |
|---|---|
| Super-classes |
obo:SO_0000460c |
| URI | http://purl.obolibrary.org/obo/SO_0000479 |
|---|---|
| Super-classes |
obo:SO_0000673c |
| Restrictions |
so:has_qualityop some obo:SO_0000870c |
| Sub-classes |
obo:SO_0000872c |
| URI | http://purl.obolibrary.org/obo/SO_0000480 |
|---|---|
| Super-classes |
obo:SO_0000151c obo:SO_0000474c |
| URI | http://purl.obolibrary.org/obo/SO_0000481 |
|---|---|
| Super-classes |
obo:SO_0000294c |
| Restrictions |
so:part_ofop some obo:SO_0000208c |
| Sub-classes |
obo:SO_0000421c obo:SO_0000420c |
| URI | http://purl.obolibrary.org/obo/SO_0000482 |
|---|---|
| Super-classes |
obo:SO_0000301c |
| Sub-classes |
obo:SO_0000509c obo:SO_0000513c obo:SO_0000558c obo:SO_0000526c obo:SO_0000511c obo:SO_0000535c obo:SO_0000534c obo:SO_0000559c obo:SO_0000560c |
| URI | http://purl.obolibrary.org/obo/SO_0000483 |
|---|---|
| Super-classes |
obo:SO_0000185c |
| Sub-classes |
obo:SO_0002040c obo:SO_0000232c obo:SO_0000012c obo:SO_0000647c obo:SO_0000586c obo:SO_0000210c obo:SO_0000209c obo:SO_0001801c obo:SO_0000231c obo:SO_0002035c obo:SO_0002038c obo:SO_0000589c obo:SO_0002042c |
| URI | http://purl.obolibrary.org/obo/SO_0000484 |
|---|---|
| Super-classes |
obo:SO_0001214c |
| Restrictions |
so:part_ofop some obo:SO_0000202c |
| URI | http://purl.obolibrary.org/obo/SO_0000485 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000572c so:has_partop some obo:SO_0000470c |
| URI | http://purl.obolibrary.org/obo/SO_0000486 |
|---|---|
| Super-classes |
obo:SO_0001214c |
| Restrictions |
so:part_ofop some obo:SO_0000200c |
| URI | http://purl.obolibrary.org/obo/SO_0000487 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000478c so:has_partop some obo:SO_0000574c so:has_partop some obo:SO_0000470c |
| URI | http://purl.obolibrary.org/obo/SO_0000488 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000470c so:has_partop some obo:SO_0000574c |
| URI | http://purl.obolibrary.org/obo/SO_0000489 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000478c so:has_partop some obo:SO_0000576c |
| URI | http://purl.obolibrary.org/obo/SO_0000490 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000470c so:has_partop some obo:SO_0000576c so:has_partop some obo:SO_0000478c |
| URI | http://purl.obolibrary.org/obo/SO_0000491 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000576c so:has_partop some obo:SO_0000470c |
| URI | http://purl.obolibrary.org/obo/SO_0000492 |
|---|---|
| Super-classes |
obo:SO_0000939c |
| Sub-classes |
obo:SO_0000556c obo:SO_0000570c |
| URI | http://purl.obolibrary.org/obo/SO_0000493 |
|---|---|
| Super-classes |
obo:SO_0000561c |
| Restrictions |
so:part_ofop some obo:SO_0000570c |
| URI | http://purl.obolibrary.org/obo/SO_0000494 |
|---|---|
| Super-classes |
obo:SO_0000562c |
| Restrictions |
so:part_ofop some obo:SO_0000570c |
| URI | http://purl.obolibrary.org/obo/SO_0000495 |
|---|---|
| Super-classes |
obo:SO_0000563c |
| Restrictions |
so:part_ofop some obo:SO_0000570c |
| URI | http://purl.obolibrary.org/obo/SO_0000496 |
|---|---|
| Super-classes |
obo:SO_0000561c |
| Restrictions |
so:part_ofop some obo:SO_0000556c |
| URI | http://purl.obolibrary.org/obo/SO_0000497 |
|---|---|
| Super-classes |
obo:SO_0000562c |
| Restrictions |
so:part_ofop some obo:SO_0000556c |
| URI | http://purl.obolibrary.org/obo/SO_0000498 |
|---|---|
| Super-classes |
obo:SO_0000563c |
| Restrictions |
so:part_ofop some obo:SO_0000556c |
| URI | http://purl.obolibrary.org/obo/SO_0000499 |
|---|---|
| Super-classes |
obo:SO_0000353c |
| URI | http://purl.obolibrary.org/obo/SO_0000500 |
|---|---|
| Super-classes |
obo:SO_0000028c |
| URI | http://purl.obolibrary.org/obo/SO_0000501 |
|---|---|
| Super-classes |
obo:SO_0000028c |
| URI | http://purl.obolibrary.org/obo/SO_0000502 |
|---|---|
| Description |
This concept cam about as a direct result of the SO meeting August 2004.nThe exact nature of the relationship between transcribed_region and gene is still up for discussion. We are going with 'associated_with' for the time being. |
| URI | http://purl.obolibrary.org/obo/SO_0000503 |
|---|
| URI | http://purl.obolibrary.org/obo/SO_0000504 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000478c so:has_partop some obo:SO_0000458c so:has_partop some obo:SO_0000572c |
| URI | http://purl.obolibrary.org/obo/SO_0000505 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000572c so:has_partop some obo:SO_0000458c |
| URI | http://purl.obolibrary.org/obo/SO_0000506 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000470c so:has_partop some obo:SO_0000478c so:has_partop some obo:SO_0000572c so:has_partop some obo:SO_0000458c |
| URI | http://purl.obolibrary.org/obo/SO_0000507 |
|---|---|
| Description |
This is the analog of the exon of a functional gene. The term was requested by Rama - SGD to allow the annotation of the parts of a pseudogene. Non-functional is defined as either its transcription or translation (or both) are prevented due to one or more mutations. |
| Super-classes |
obo:SO_0000462c |
| Restrictions |
so:part_ofop some obo:SO_0000516c so:non_functional_homolog_ofop some obo:SO_0000147c |
| URI | http://purl.obolibrary.org/obo/SO_0000508 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000572c so:has_partop some obo:SO_0000458c so:has_partop some obo:SO_0000470c |
| URI | http://purl.obolibrary.org/obo/SO_0000509 |
|---|---|
| Super-classes |
obo:SO_0000482c |
| Restrictions |
so:has_partop some obo:SO_0000470c so:has_partop some obo:SO_0000478c so:has_partop some obo:SO_0000458c |
| URI | http://purl.obolibrary.org/obo/SO_0000510 |
|---|---|
| Super-classes |
obo:SO_0000936c |
| URI | http://purl.obolibrary.org/obo/SO_0000511 |
|---|---|
| Super-classes |
obo:SO_0000482c |
| Restrictions |
so:has_partop some obo:SO_0000478c so:has_partop some obo:SO_0000470c |
| URI | http://purl.obolibrary.org/obo/SO_0000512 |
|---|---|
| Super-classes |
obo:SO_1000029c |
| URI | http://purl.obolibrary.org/obo/SO_0000513 |
|---|---|
| Super-classes |
obo:SO_0000482c |
| Restrictions |
so:has_partop some obo:SO_0000470c |
| URI | http://purl.obolibrary.org/obo/SO_0000514 |
|---|---|
| Super-classes |
obo:SO_0000562c |
| Restrictions |
so:part_ofop some obo:SO_0000302c |
| URI | http://purl.obolibrary.org/obo/SO_0000515 |
|---|---|
| Super-classes |
obo:SO_0000561c |
| Restrictions |
so:part_ofop some obo:SO_0000302c |
| URI | http://purl.obolibrary.org/obo/SO_0000516 |
|---|---|
| Description |
This is the analog of the transcript of a functional gene. The term was requested by Rama - SGD to allow the annotation of the parts of a pseudogene. Non-functional is defined as either its transcription or translation (or both) are prevented due to one or more mutations. |
| Super-classes |
obo:SO_0000462c |
| Restrictions |
so:non_functional_homolog_ofop some obo:SO_0000673c so:part_ofop some obo:SO_0000336c |
| Sub-classes |
obo:SO_0000777c obo:SO_0000778c |
| URI | http://purl.obolibrary.org/obo/SO_0000517 |
|---|---|
| Super-classes |
obo:SO_0000563c |
| Restrictions |
so:part_ofop some obo:SO_0000302c |
| URI | http://purl.obolibrary.org/obo/SO_0000518 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000572c so:has_partop some obo:SO_0000466c |
| URI | http://purl.obolibrary.org/obo/SO_0000519 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000572c so:has_partop some obo:SO_0000470c so:has_partop some obo:SO_0000466c |
| URI | http://purl.obolibrary.org/obo/SO_0000520 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000574c so:has_partop some obo:SO_0000466c so:has_partop some obo:SO_0000478c |
| URI | http://purl.obolibrary.org/obo/SO_0000521 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000574c so:has_partop some obo:SO_0000466c |
| URI | http://purl.obolibrary.org/obo/SO_0000522 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000466c so:has_partop some obo:SO_0000470c so:has_partop some obo:SO_0000574c |
| URI | http://purl.obolibrary.org/obo/SO_0000523 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000576c so:has_partop some obo:SO_0000466c so:has_partop some obo:SO_0000478c |
| URI | http://purl.obolibrary.org/obo/SO_0000524 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000576c so:has_partop some obo:SO_0000466c |
| URI | http://purl.obolibrary.org/obo/SO_0000525 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000470c so:has_partop some obo:SO_0000466c so:has_partop some obo:SO_0000576c |
| URI | http://purl.obolibrary.org/obo/SO_0000526 |
|---|---|
| Super-classes |
obo:SO_0000482c |
| Restrictions |
so:has_partop some obo:SO_0000466c |
| URI | http://purl.obolibrary.org/obo/SO_0000527 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000466c so:has_partop some obo:SO_0000458c so:has_partop some obo:SO_0000478c so:has_partop some obo:SO_0000572c |
| URI | http://purl.obolibrary.org/obo/SO_0000528 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000466c so:has_partop some obo:SO_0000572c so:has_partop some obo:SO_0000458c |
| URI | http://purl.obolibrary.org/obo/SO_0000529 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000478c so:has_partop some obo:SO_0000466c so:has_partop some obo:SO_0000470c so:has_partop some obo:SO_0000572c so:has_partop some obo:SO_0000458c |
| URI | http://purl.obolibrary.org/obo/SO_0000530 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000470c so:has_partop some obo:SO_0000572c so:has_partop some obo:SO_0000458c so:has_partop some obo:SO_0000466c |
| URI | http://purl.obolibrary.org/obo/SO_0000531 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000466c so:has_partop some obo:SO_0000470c so:has_partop some obo:SO_0000478c so:has_partop some obo:SO_0000458c |
| URI | http://purl.obolibrary.org/obo/SO_0000532 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000458c so:has_partop some obo:SO_0000470c so:has_partop some obo:SO_0000466c |
| URI | http://purl.obolibrary.org/obo/SO_0000533 |
|---|---|
| Super-classes |
obo:SO_0000561c |
| Restrictions |
so:part_ofop some obo:SO_0000538c |
| URI | http://purl.obolibrary.org/obo/SO_0000534 |
|---|---|
| Super-classes |
obo:SO_0000482c |
| Restrictions |
so:has_partop some obo:SO_0000470c so:has_partop some obo:SO_0000466c |
| URI | http://purl.obolibrary.org/obo/SO_0000535 |
|---|---|
| Super-classes |
obo:SO_0000482c |
| Restrictions |
so:has_partop some obo:SO_0000470c so:has_partop some obo:SO_0000466c so:has_partop some obo:SO_0000478c |
| URI | http://purl.obolibrary.org/obo/SO_0000536 |
|---|---|
| Super-classes |
obo:SO_0000562c |
| Restrictions |
so:part_ofop some obo:SO_0000538c |
| URI | http://purl.obolibrary.org/obo/SO_0000537 |
|---|---|
| Super-classes |
obo:SO_0000563c |
| Restrictions |
so:part_ofop some obo:SO_0000538c |
| URI | http://purl.obolibrary.org/obo/SO_0000538 |
|---|---|
| Super-classes |
obo:SO_0000939c |
| URI | http://purl.obolibrary.org/obo/SO_0000539 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000478c so:has_partop some obo:SO_0000572c |
| URI | http://purl.obolibrary.org/obo/SO_0000540 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000470c so:has_partop some obo:SO_0000478c so:has_partop some obo:SO_0000572c |
| URI | http://purl.obolibrary.org/obo/SO_0000541 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000478c so:has_partop some obo:SO_0000574c |
| URI | http://purl.obolibrary.org/obo/SO_0000542 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000466c so:has_partop some obo:SO_0000478c so:has_partop some obo:SO_0000572c |
| URI | http://purl.obolibrary.org/obo/SO_0000543 |
|---|
| URI | http://purl.obolibrary.org/obo/SO_0000544 |
|---|---|
| Super-classes |
obo:SO_0000182c |
| URI | http://purl.obolibrary.org/obo/SO_0000545 |
|---|---|
| Super-classes |
obo:SO_0000591c |
| Restrictions |
so:part_ofop some obo:SO_1001268c |
| URI | http://purl.obolibrary.org/obo/SO_0000546 |
|---|---|
| Super-classes |
obo:SO_0000351c |
| URI | http://purl.obolibrary.org/obo/SO_0000547 |
|---|---|
| Super-classes |
obo:SO_1000038c |
| URI | http://purl.obolibrary.org/obo/SO_0000548 |
|---|---|
| Super-classes |
obo:SO_0001217c |
| Restrictions |
so:transcribed_toop some obo:SO_0000873c |
| URI | http://purl.obolibrary.org/obo/SO_0000549 |
|---|---|
| Super-classes |
obo:SO_1000038c |
| URI | http://purl.obolibrary.org/obo/SO_0000550 |
|---|---|
| Description |
Examples are Nullo-4, Haplo-4 and triplo-4 in Drosophila. |
| Super-classes |
obo:SO_1000183c |
| Sub-classes |
obo:SO_0000567c |
| URI | http://purl.obolibrary.org/obo/SO_0000551 |
|---|---|
| Description |
Moved from transcription_regulatory_region (SO:0001679) to transcriptional_cis_regulatory_region (SO:0001055) by Dave Sant on Feb 11, 2021 when transcription_regulatory_region was merged into transcriptional_cis_regulatory_region to be consistent with GO and reduce redundancy as part of the GREEKC consortium. See GitHub Issue #527. |
| Super-classes |
obo:SO_0001055c |
| URI | http://purl.obolibrary.org/obo/SO_0000552 |
|---|---|
| Description |
Not found in Eukaryotic sequence. |
| Super-classes |
obo:SO_0000139c |
| URI | http://purl.obolibrary.org/obo/SO_0000553 |
|---|---|
| Super-classes |
obo:SO_0000699c |
| Restrictions |
so:part_ofop some obo:SO_0000205c so:part_ofop some obo:SO_0000233c |
| URI | http://purl.obolibrary.org/obo/SO_0000554 |
|---|
| URI | http://purl.obolibrary.org/obo/SO_0000555 |
|---|---|
| Super-classes |
obo:SO_0000303c |
| URI | http://purl.obolibrary.org/obo/SO_0000556 |
|---|---|
| Super-classes |
obo:SO_0000492c |
| URI | http://purl.obolibrary.org/obo/SO_0000557 |
|---|---|
| Super-classes |
obo:SO_0000303c |
| URI | http://purl.obolibrary.org/obo/SO_0000558 |
|---|---|
| Super-classes |
obo:SO_0000482c |
| Restrictions |
so:has_partop some obo:SO_0000478c |
| URI | http://purl.obolibrary.org/obo/SO_0000559 |
|---|---|
| Super-classes |
obo:SO_0000482c |
| Restrictions |
so:has_partop some obo:SO_0000458c |
| URI | http://purl.obolibrary.org/obo/SO_0000560 |
|---|---|
| Super-classes |
obo:SO_0000482c |
| Restrictions |
so:has_partop some obo:SO_0000458c so:has_partop some obo:SO_0000470c |
| URI | http://purl.obolibrary.org/obo/SO_0000561 |
|---|---|
| Super-classes |
obo:SO_0000939c |
| Sub-classes |
obo:SO_0000515c obo:SO_0000496c obo:SO_0000533c obo:SO_0000493c |
| URI | http://purl.obolibrary.org/obo/SO_0000562 |
|---|---|
| Super-classes |
obo:SO_0000939c |
| Sub-classes |
obo:SO_0000494c obo:SO_0000536c obo:SO_0000497c obo:SO_0000514c |
| URI | http://purl.obolibrary.org/obo/SO_0000563 |
|---|---|
| Super-classes |
obo:SO_0000301c |
| Sub-classes |
obo:SO_0000517c obo:SO_0000495c obo:SO_0000537c obo:SO_0000498c |
| URI | http://purl.obolibrary.org/obo/SO_0000564 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000470c so:has_partop some obo:SO_0000466c so:has_partop some obo:SO_0000572c so:has_partop some obo:SO_0000478c |
| URI | http://purl.obolibrary.org/obo/SO_0000565 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000478c so:has_partop some obo:SO_0000470c so:has_partop some obo:SO_0000574c so:has_partop some obo:SO_0000466c |
| URI | http://purl.obolibrary.org/obo/SO_0000566 |
|---|---|
| Super-classes |
obo:SO_0000938c |
| Restrictions |
so:has_partop some obo:SO_0000576c so:has_partop some obo:SO_0000478c so:has_partop some obo:SO_0000466c so:has_partop some obo:SO_0000470c |
| URI | http://purl.obolibrary.org/obo/SO_0000567 |
|---|---|
| Super-classes |
obo:SO_0000550c |
| URI | http://purl.obolibrary.org/obo/SO_0000568 |
|---|---|
| Description |
Definition updated in Aug 2020 by Dave Sant. |
| Super-classes |
obo:SO_0000167c |
| URI | http://purl.obolibrary.org/obo/SO_0000569 |
|---|---|
| Description |
GO:0003964 RNA-directed DNA polymerase activity. |
| Super-classes |
obo:SO_0000733c |
| URI | http://purl.obolibrary.org/obo/SO_0000570 |
|---|---|
| Super-classes |
obo:SO_0000492c |
| URI | http://purl.obolibrary.org/obo/SO_0000571 |
|---|---|
| Super-classes |
obo:SO_0000011c |
| URI | http://purl.obolibrary.org/obo/SO_0000572 |
|---|---|
| Super-classes |
obo:SO_0000936c |
| URI | http://purl.obolibrary.org/obo/SO_0000573 |
|---|---|
| Super-classes |
obo:SO_0000011c |
| URI | http://purl.obolibrary.org/obo/SO_0000574 |
|---|---|
| Super-classes |
obo:SO_0000936c |
| URI | http://purl.obolibrary.org/obo/SO_0000575 |
|---|---|
| Super-classes |
obo:SO_0000011c |
| URI | http://purl.obolibrary.org/obo/SO_0000576 |
|---|---|
| Super-classes |
obo:SO_0000936c |
| URI | http://purl.obolibrary.org/obo/SO_0000577 |
|---|---|
| Super-classes |
obo:SO_0000628c |
| Sub-classes |
obo:SO_0001795c obo:SO_0001794c |
| URI | http://purl.obolibrary.org/obo/SO_0000578 |
|---|---|
| Super-classes |
obo:SO_0000011c |
| Sub-classes |
obo:SO_0000608c obo:SO_0000585c |
| URI | http://purl.obolibrary.org/obo/SO_0000579 |
|---|---|
| Super-classes |
obo:SO_0000833c |
| Sub-classes |
obo:SO_0000583c obo:SO_0000607c obo:SO_0000604c obo:SO_0000606c |
| URI | http://purl.obolibrary.org/obo/SO_0000580 |
|---|---|
| Super-classes |
obo:SO_0000232c |
| URI | http://purl.obolibrary.org/obo/SO_0000581 |
|---|---|
| Super-classes |
obo:SO_0001411c |
| URI | http://purl.obolibrary.org/obo/SO_0000582 |
|---|---|
| Super-classes |
obo:SO_0000232c |
| URI | http://purl.obolibrary.org/obo/SO_0000583 |
|---|---|
| Super-classes |
obo:SO_0000579c |
| URI | http://purl.obolibrary.org/obo/SO_0000584 |
|---|---|
| Super-classes |
obo:SO_0000370c |
| URI | http://purl.obolibrary.org/obo/SO_0000585 |
|---|---|
| Super-classes |
obo:SO_0000578c |
| URI | http://purl.obolibrary.org/obo/SO_0000586 |
|---|---|
| Super-classes |
obo:SO_0000483c |
| URI | http://purl.obolibrary.org/obo/SO_0000587 |
|---|---|
| Description |
GO:0000372. |
| Super-classes |
obo:SO_0000588c |
| URI | http://purl.obolibrary.org/obo/SO_0000588 |
|---|---|
| Super-classes |
obo:SO_0000188c |
| Restrictions |
so:has_qualityop some obo:SO_0001186c |
| Sub-classes |
obo:SO_0001213c obo:SO_0000587c obo:SO_0000603c |
| URI | http://purl.obolibrary.org/obo/SO_0000589 |
|---|---|
| Super-classes |
obo:SO_0000483c |
| URI | http://purl.obolibrary.org/obo/SO_0000590 |
|---|---|
| Super-classes |
obo:SO_0000655c |
| Restrictions |
so:derives_fromop some obo:SO_0000589c |
| URI | http://purl.obolibrary.org/obo/SO_0000591 |
|---|---|
| Super-classes |
obo:SO_0000002c |
| Sub-classes |
obo:SO_0000592c obo:SO_0000545c |
| URI | http://purl.obolibrary.org/obo/SO_0000592 |
|---|---|
| Super-classes |
obo:SO_0000591c |
| URI | http://purl.obolibrary.org/obo/SO_0000593 |
|---|---|
| Super-classes |
obo:SO_0000275c |
| Restrictions |
so:derives_fromop some obo:SO_0000595c |
| Sub-classes |
obo:SO_0005841c obo:SO_0000403c obo:SO_0001179c |
| URI | http://purl.obolibrary.org/obo/SO_0000594 |
|---|---|
| Super-classes |
obo:SO_0000275c |
| Restrictions |
so:derives_fromop some obo:SO_0000596c |
| Sub-classes |
obo:SO_0001187c |
| URI | http://purl.obolibrary.org/obo/SO_0000595 |
|---|---|
| Super-classes |
obo:SO_0000232c |
| URI | http://purl.obolibrary.org/obo/SO_0000596 |
|---|---|
| Super-classes |
obo:SO_0000232c |
| URI | http://purl.obolibrary.org/obo/SO_0000598 |
|---|
| URI | http://purl.obolibrary.org/obo/SO_0000602 |
|---|---|
| Super-classes |
obo:SO_0000655c |
| URI | http://purl.obolibrary.org/obo/SO_0000603 |
|---|---|
| Description |
GO:0000373. |
| Super-classes |
obo:SO_0000588c |
| Sub-classes |
obo:SO_0002226c obo:SO_0000381c obo:SO_0000382c |
| URI | http://purl.obolibrary.org/obo/SO_0000604 |
|---|---|
| Super-classes |
obo:SO_0000579c |
| URI | http://purl.obolibrary.org/obo/SO_0000605 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0001411c |
| URI | http://purl.obolibrary.org/obo/SO_0000606 |
|---|---|
| Super-classes |
obo:SO_0000579c |
| URI | http://purl.obolibrary.org/obo/SO_0000607 |
|---|---|
| Super-classes |
obo:SO_0000579c |
| URI | http://purl.obolibrary.org/obo/SO_0000608 |
|---|---|
| Super-classes |
obo:SO_0000578c |
| URI | http://purl.obolibrary.org/obo/SO_0000609 |
|---|---|
| Super-classes |
obo:SO_0001411c |
| Restrictions |
so:adjacent_toop some obo:SO_0000602c |
| URI | http://purl.obolibrary.org/obo/SO_0000610 |
|---|---|
| Super-classes |
obo:SO_0001411c |
| Restrictions |
so:adjacent_toop some obo:SO_0000234c |
| URI | http://purl.obolibrary.org/obo/SO_0000611 |
|---|---|
| Super-classes |
obo:SO_0000841c |
| URI | http://purl.obolibrary.org/obo/SO_0000612 |
|---|---|
| Super-classes |
obo:SO_0000841c |
| URI | http://purl.obolibrary.org/obo/SO_0000613 |
|---|---|
| Description |
former parent RNA_polymerase_promoter SO:0001203 was merged with promoter SO:0000167 in Aug 2020 as part of GREEKC. |
| Super-classes |
obo:SO_0002222c |
| Sub-classes |
obo:SO_0001672c obo:SO_0001671c obo:SO_0001913c |
| URI | http://purl.obolibrary.org/obo/SO_0000614 |
|---|---|
| Description |
Moved to transcriptional_cis_regulatory_region (SO:0001055) from gene_group_regulatory_region (SO:0000752) on 11 Feb 2021 when SO:0000752 was merged into SO:0001055. See GitHub Issue #529. |
| Super-classes |
obo:SO_0000141c |
| Sub-classes |
obo:SO_0000981c obo:SO_0000982c |
| URI | http://purl.obolibrary.org/obo/SO_0000615 |
|---|---|
| Super-classes |
obo:SO_0000951c |
| URI | http://purl.obolibrary.org/obo/SO_0000616 |
|---|---|
| Super-classes |
obo:SO_0000835c |
| URI | http://purl.obolibrary.org/obo/SO_0000617 |
|---|---|
| Super-classes |
obo:SO_0000171c |
| URI | http://purl.obolibrary.org/obo/SO_0000618 |
|---|---|
| Super-classes |
obo:SO_0000171c |
| URI | http://purl.obolibrary.org/obo/SO_0000619 |
|---|---|
| Description |
Binds TFIIIC. |
| Super-classes |
obo:SO_0001660c |
| Sub-classes |
obo:SO_0001675c obo:SO_0001676c |
| URI | http://purl.obolibrary.org/obo/SO_0000620 |
|---|---|
| Description |
Binds TFIIIC. |
| Super-classes |
obo:SO_0001660c |
| Restrictions |
so:part_ofop some obo:SO_0000618c |
| URI | http://purl.obolibrary.org/obo/SO_0000621 |
|---|---|
| Super-classes |
obo:SO_0000171c |
| URI | http://purl.obolibrary.org/obo/SO_0000622 |
|---|---|
| Super-classes |
obo:SO_0001660c |
| Restrictions |
so:part_ofop some obo:SO_0000617c |
| URI | http://purl.obolibrary.org/obo/SO_0000623 |
|---|---|
| Super-classes |
obo:SO_0000011c |
| URI | http://purl.obolibrary.org/obo/SO_0000624 |
|---|---|
| Super-classes |
obo:SO_0000628c |
| URI | http://purl.obolibrary.org/obo/SO_0000625 |
|---|---|
| Super-classes |
obo:SO_0000727c |
| Sub-classes |
obo:SO_0002058c obo:SO_0002056c |
| URI | http://purl.obolibrary.org/obo/SO_0000626 |
|---|---|
| Super-classes |
obo:SO_0000830c |
| Sub-classes |
obo:SO_0000036c |
| URI | http://purl.obolibrary.org/obo/SO_0000627 |
|---|---|
| Description |
moved from is_a: SO:0001055 transcriptional_cis_regulatory_region as per request from GREEKC initiative in August 2020. |
| Super-classes |
obo:SO_0000727c |
| Sub-classes |
obo:SO_0002190c obo:SO_0002020c |
| URI | http://purl.obolibrary.org/obo/SO_0000628 |
|---|---|
| Super-classes |
obo:SO_0000830c |
| Sub-classes |
obo:SO_0000577c obo:SO_0001997c obo:SO_0000624c |
| URI | http://purl.obolibrary.org/obo/SO_0000629 |
|---|---|
| Super-classes |
obo:SO_0000836c |
| Restrictions |
so:part_ofop some obo:SO_0000204c |
| URI | http://purl.obolibrary.org/obo/SO_0000630 |
|---|---|
| Super-classes |
obo:SO_0000837c |
| Restrictions |
so:part_ofop some obo:SO_0000203c |
| URI | http://purl.obolibrary.org/obo/SO_0000631 |
|---|---|
| Super-classes |
obo:SO_0000185c obo:SO_0000078c |
| Restrictions |
so:has_qualityop some obo:SO_0000880c |
| Sub-classes |
obo:SO_1001197c |
| URI | http://purl.obolibrary.org/obo/SO_0000632 |
|---|---|
| Super-classes |
obo:SO_0000185c obo:SO_0000665c |
| Restrictions |
so:has_qualityop some obo:SO_0000878c |
| URI | http://purl.obolibrary.org/obo/SO_0000633 |
|---|---|
| Super-classes |
obo:SO_0000665c obo:SO_0000234c |
| Restrictions |
so:has_qualityop some obo:SO_0000878c |
| URI | http://purl.obolibrary.org/obo/SO_0000634 |
|---|---|
| Super-classes |
obo:SO_0000078c obo:SO_0000234c |
| Restrictions |
so:has_qualityop some obo:SO_0000880c |
| Sub-classes |
obo:SO_0000716c |
| URI | http://purl.obolibrary.org/obo/SO_0000635 |
|---|---|
| Super-classes |
obo:SO_0000185c |
| URI | http://purl.obolibrary.org/obo/SO_0000636 |
|---|---|
| Super-classes |
obo:SO_0000835c |
| Restrictions |
so:part_ofop some obo:SO_0000635c |
| URI | http://purl.obolibrary.org/obo/SO_0000637 |
|---|---|
| Super-classes |
obo:SO_0000804c obo:SO_0000155c |
| Restrictions |
so:has_qualityop some obo:SO_0000783c |
| Sub-classes |
obo:SO_0000779c obo:SO_0001479c obo:SO_0001478c obo:SO_0001477c |
| URI | http://purl.obolibrary.org/obo/SO_0000638 |
|---|---|
| Super-classes |
obo:SO_0000838c |
| Sub-classes |
obo:SO_0000640c obo:SO_0000639c |
| URI | http://purl.obolibrary.org/obo/SO_0000639 |
|---|---|
| Super-classes |
obo:SO_0000638c |
| URI | http://purl.obolibrary.org/obo/SO_0000640 |
|---|---|
| Super-classes |
obo:SO_0000638c |
| URI | http://purl.obolibrary.org/obo/SO_0000641 |
|---|---|
| Super-classes |
obo:SO_0000289c |
| URI | http://purl.obolibrary.org/obo/SO_0000642 |
|---|---|
| Super-classes |
obo:SO_0000011c |
| URI | http://purl.obolibrary.org/obo/SO_0000643 |
|---|---|
| Super-classes |
obo:SO_0000005c |
| URI | http://purl.obolibrary.org/obo/SO_0000644 |
|---|---|
| Super-classes |
obo:SO_0000655c |
| Restrictions |
so:derives_fromop some obo:SO_0000645c |
| Sub-classes |
obo:SO_0001904c obo:SO_0000383c |
| URI | http://purl.obolibrary.org/obo/SO_0000645 |
|---|---|
| Super-classes |
obo:SO_0000185c |
| URI | http://purl.obolibrary.org/obo/SO_0000646 |
|---|---|
| Super-classes |
obo:SO_0000370c |
| URI | http://purl.obolibrary.org/obo/SO_0000647 |
|---|---|
| Super-classes |
obo:SO_0000483c |
| Restrictions |
so:has_partop some obo:SO_0001244c |
| URI | http://purl.obolibrary.org/obo/SO_0000650 |
|---|---|
| Super-classes |
obo:SO_0000252c |
| Restrictions |
so:derives_fromop some obo:SO_0000255c |
| Sub-classes |
obo:SO_0001000c obo:SO_0000407c |
| URI | http://purl.obolibrary.org/obo/SO_0000651 |
|---|---|
| Super-classes |
obo:SO_0000252c |
| Restrictions |
so:derives_fromop some obo:SO_0000325c |
| Sub-classes |
obo:SO_0001002c obo:SO_0002337c obo:SO_0001171c obo:SO_0000375c obo:SO_0001001c obo:SO_0000653c obo:SO_0000652c |
| URI | http://purl.obolibrary.org/obo/SO_0000652 |
|---|---|
| Super-classes |
obo:SO_0000651c |
| URI | http://purl.obolibrary.org/obo/SO_0000653 |
|---|---|
| Super-classes |
obo:SO_0000651c |
| URI | http://purl.obolibrary.org/obo/SO_0000654 |
|---|---|
| Super-classes |
obo:SO_0000089c |
| Restrictions |
so:part_ofop some obo:SO_0000742c |
| Sub-classes |
obo:SO_1001196c |
| URI | http://purl.obolibrary.org/obo/SO_0000655 |
|---|---|
| Description |
A ncRNA is a processed_transcript, so it may not contain parts such as transcribed_spacer_regions that are removed in the act of processing. For the corresponding primary_transcripts, please see term SO:0000483 nc_primary_transcript. |
| Super-classes |
obo:SO_0000233c |
| Sub-classes |
obo:SO_0000386c obo:SO_0002022c obo:SO_0002247c obo:SO_0000404c obo:SO_0000252c obo:SO_0000590c obo:SO_0002291c obo:SO_0000405c obo:SO_0000989c obo:SO_0000013c obo:SO_0001927c obo:SO_0002120c obo:SO_0000602c obo:SO_0001800c obo:SO_0000454c obo:SO_0005843c obo:SO_0000385c obo:SO_0002340c obo:SO_0001870c obo:SO_0000990c obo:SO_0000644c obo:SO_0002031c obo:SO_0001877c obo:SO_0000390c |
| URI | http://purl.obolibrary.org/obo/SO_0000656 |
|---|---|
| Super-classes |
obo:SO_0000011c |
| URI | http://purl.obolibrary.org/obo/SO_0000657 |
|---|---|
| Super-classes |
obo:SO_0001411c |
| Restrictions |
so:has_partop some obo:SO_0000726c |
| Sub-classes |
obo:SO_0001496c obo:SO_0002192c obo:SO_0001649c obo:SO_0002201c obo:SO_0002257c obo:SO_0000658c obo:SO_0000314c obo:SO_0001797c obo:SO_0000433c obo:SO_0001485c obo:SO_0000705c obo:SO_0000286c obo:SO_0000294c obo:SO_0001484c obo:SO_0000293c |
| URI | http://purl.obolibrary.org/obo/SO_0000658 |
|---|---|
| Super-classes |
obo:SO_0000657c |
| URI | http://purl.obolibrary.org/obo/SO_0000659 |
|---|---|
| Super-classes |
obo:SO_0000011c |
| URI | http://purl.obolibrary.org/obo/SO_0000662 |
|---|---|
| Description |
GO:0000398. |
| Super-classes |
obo:SO_0000188c |
| Sub-classes |
obo:SO_0000295c obo:SO_0000184c |
| URI | http://purl.obolibrary.org/obo/SO_0000663 |
|---|---|
| Super-classes |
obo:SO_0000011c |
| URI | http://purl.obolibrary.org/obo/SO_0000664 |
|---|---|
| Super-classes |
obo:SO_0000830c |
| URI | http://purl.obolibrary.org/obo/SO_0000665 |
|---|---|
| Super-classes |
obo:SO_0000673c |
| Restrictions |
so:has_qualityop some obo:SO_0000878c |
| Sub-classes |
obo:SO_0000633c obo:SO_0000632c |
| URI | http://purl.obolibrary.org/obo/SO_0000666 |
|---|---|
| Super-classes |
obo:SO_0000188c obo:SO_0001037c |
| Restrictions |
so:has_qualityop some obo:SO_0001234c |
| URI | http://purl.obolibrary.org/obo/SO_0000667 |
|---|---|
| Super-classes |
obo:SO_0001411c obo:SO_0001059c |
| Sub-classes |
obo:SO_0001837c obo:SO_0001218c obo:SO_0001838c obo:SO_1000035c |
| URI | http://purl.obolibrary.org/obo/SO_0000668 |
|---|---|
| Super-classes |
obo:SO_0000102c |
| URI | http://purl.obolibrary.org/obo/SO_0000669 |
|---|---|
| Super-classes |
obo:SO_0000298c |
| Sub-classes |
obo:SO_0000670c obo:SO_0000299c obo:SO_0000672c obo:SO_0000671c |
| URI | http://purl.obolibrary.org/obo/SO_0000670 |
|---|---|
| Super-classes |
obo:SO_0000669c |
| URI | http://purl.obolibrary.org/obo/SO_0000671 |
|---|---|
| Super-classes |
obo:SO_0000669c |
| URI | http://purl.obolibrary.org/obo/SO_0000672 |
|---|---|
| Super-classes |
obo:SO_0000669c |
| URI | http://purl.obolibrary.org/obo/SO_0000673 |
|---|---|
| Description |
Added relationship overlaps SO:0002300 unit_of_gene_expression with Mejia-Almonte et.al PMID:32665585 Aug 5, 2020. |
| Super-classes |
obo:SO_0000831c |
| Restrictions |
so:overlapsop some obo:SO_0002300c |
| Sub-classes |
obo:SO_0000372c obo:SO_1001187c obo:SO_0002138c obo:SO_0002208c obo:SO_0001503c obo:SO_0000278c obo:SO_0000665c obo:SO_0000078c obo:SO_0000479c obo:SO_0000233c obo:SO_0000185c obo:SO_0000873c obo:SO_0000279c obo:SO_0000118c obo:SO_0000681c |
| URI | http://purl.obolibrary.org/obo/SO_0000676 |
|---|---|
| Super-classes |
obo:SO_0000164c |
| URI | http://purl.obolibrary.org/obo/SO_0000677 |
|---|---|
| Super-classes |
obo:SO_0000163c |
| URI | http://purl.obolibrary.org/obo/SO_0000678 |
|---|---|
| Super-classes |
obo:SO_0000164c |
| URI | http://purl.obolibrary.org/obo/SO_0000679 |
|---|---|
| Super-classes |
obo:SO_0000163c |
| URI | http://purl.obolibrary.org/obo/SO_0000680 |
|---|---|
| Super-classes |
obo:SO_0000318c |
| Sub-classes |
obo:SO_1001273c obo:SO_1001269c |
| URI | http://purl.obolibrary.org/obo/SO_0000681 |
|---|---|
| Super-classes |
obo:SO_0000673c |
| URI | http://purl.obolibrary.org/obo/SO_0000683 |
|---|---|
| Super-classes |
obo:SO_0000344c |
| URI | http://purl.obolibrary.org/obo/SO_0000684 |
|---|---|
| Super-classes |
obo:SO_0000059c |
| Sub-classes |
obo:SO_0000322c obo:SO_0000354c |
| URI | http://purl.obolibrary.org/obo/SO_0000685 |
|---|---|
| Super-classes |
obo:SO_0000322c |
| URI | http://purl.obolibrary.org/obo/SO_0000686 |
|---|---|
| Super-classes |
obo:SO_1000044c |
| URI | http://purl.obolibrary.org/obo/SO_0000687 |
|---|---|
| Super-classes |
obo:SO_0000699c |
| URI | http://purl.obolibrary.org/obo/SO_0000688 |
|---|---|
| Super-classes |
obo:SO_0000353c |
| URI | http://purl.obolibrary.org/obo/SO_0000689 |
|---|---|
| Super-classes |
obo:SO_0000102c |
| URI | http://purl.obolibrary.org/obo/SO_0000690 |
|---|---|
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:transcribed_toop some obo:SO_0000078c |
| Sub-classes |
obo:SO_0000692c |
| URI | http://purl.obolibrary.org/obo/SO_0000691 |
|---|---|
| Super-classes |
obo:SO_0100011c |
| URI | http://purl.obolibrary.org/obo/SO_0000692 |
|---|---|
| Super-classes |
obo:SO_0000690c |
| Restrictions |
so:transcribed_toop some obo:SO_0000079c |
| Sub-classes |
obo:SO_0000722c obo:SO_0000721c |
| URI | http://purl.obolibrary.org/obo/SO_0000693 |
|---|---|
| Super-classes |
obo:SO_0001217c |
| Restrictions |
so:has_qualityop some obo:SO_0000881c |
| Sub-classes |
obo:SO_0000697c obo:SO_0000711c obo:SO_0000712c |
| URI | http://purl.obolibrary.org/obo/SO_0000694 |
|---|---|
| Super-classes |
obo:SO_0001483c |
| URI | http://purl.obolibrary.org/obo/SO_0000695 |
|---|---|
| Description |
Requested by Lynn Crosby, jan 2006. |
| Super-classes |
obo:SO_0001409c |
| Sub-classes |
obo:SO_0000006c obo:SO_2000061c obo:SO_0000411c obo:SO_0000696c obo:SO_0000753c obo:SO_0000785c obo:SO_0000151c |
| URI | http://purl.obolibrary.org/obo/SO_0000696 |
|---|---|
| Super-classes |
obo:SO_0000695c |
| Sub-classes |
obo:SO_0000442c obo:SO_0001998c obo:SO_0001012c obo:SO_0000441c obo:SO_0000051c obo:SO_0000031c obo:SO_0001247c obo:SO_0000324c |
| URI | http://purl.obolibrary.org/obo/SO_0000697 |
|---|---|
| Super-classes |
obo:SO_0000693c |
| Restrictions |
so:has_partop some obo:SO_0000883c |
| Sub-classes |
obo:SO_0000710c obo:SO_0000698c |
| URI | http://purl.obolibrary.org/obo/SO_0000698 |
|---|---|
| Super-classes |
obo:SO_0000697c |
| Restrictions |
so:has_partop some obo:SO_0000884c |
| URI | http://purl.obolibrary.org/obo/SO_0000699 |
|---|---|
| Description |
A junction is a boundary between regions. A boundary has an extent of zero. |
| Super-classes |
obo:SO_0000110c |
| Sub-classes |
obo:SO_0002305c obo:SO_0002204c obo:SO_0001474c obo:SO_0000103c obo:SO_0000366c obo:SO_0001421c obo:SO_0000179c obo:SO_0000553c obo:SO_0001021c obo:SO_0000333c obo:SO_0000687c |
| URI | http://purl.obolibrary.org/obo/SO_0000700 |
|---|---|
| Super-classes |
obo:SO_0001410c |
| Sub-classes |
obo:SO_0000703c obo:SO_0000413c obo:SO_0001082c |
| URI | http://purl.obolibrary.org/obo/SO_0000701 |
|---|---|
| Super-classes |
obo:SO_0000413c |
| URI | http://purl.obolibrary.org/obo/SO_0000702 |
|---|---|
| Super-classes |
obo:SO_0000413c |
| URI | http://purl.obolibrary.org/obo/SO_0000703 |
|---|---|
| Super-classes |
obo:SO_0000700c |
| Sub-classes |
obo:SO_0100010c obo:SO_0001261c |
| URI | http://purl.obolibrary.org/obo/SO_0000704 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. A gene may be considered as a unit of inheritance. |
| Super-classes |
obo:SO_0001411c |
| Restrictions |
so:member_ofop some obo:SO_0005855c |
| Sub-classes |
obo:SO_0000285c obo:SO_0001431c obo:SO_0000896c obo:SO_0000816c obo:SO_0000891c obo:SO_0000097c obo:SO_0000280c obo:SO_0000902c obo:SO_0000892c obo:SO_0000090c obo:SO_0000098c obo:SO_0001219c obo:SO_0000127c obo:SO_0000690c obo:SO_0000287c obo:SO_0000459c obo:SO_0000087c obo:SO_0000996c obo:SO_0000898c obo:SO_0005853c obo:SO_0002121c obo:SO_0001867c obo:SO_0001263c obo:SO_0000111c obo:SO_0000456c obo:SO_0000099c obo:SO_0000088c obo:SO_0001217c obo:SO_0001739c obo:SO_0000890c |
| URI | http://purl.obolibrary.org/obo/SO_0000705 |
|---|---|
| Super-classes |
obo:SO_0000657c |
| Sub-classes |
obo:SO_0000005c obo:SO_0001934c obo:SO_0002202c |
| URI | http://purl.obolibrary.org/obo/SO_0000706 |
|---|---|
| Description |
This region contains a polypyridine tract and AG dinucleotide in some organisms and is UUUCAG in C. elegans. |
| Super-classes |
obo:SO_0001420c |
| Sub-classes |
obo:SO_0000708c obo:SO_0000709c |
| URI | http://purl.obolibrary.org/obo/SO_0000707 |
|---|---|
| Description |
SL RNA contains a donor site. |
| Super-classes |
obo:SO_0001420c |
| URI | http://purl.obolibrary.org/obo/SO_0000708 |
|---|---|
| Super-classes |
obo:SO_0000706c |
| URI | http://purl.obolibrary.org/obo/SO_0000709 |
|---|---|
| Super-classes |
obo:SO_0000706c |
| Sub-classes |
obo:SO_0001756c obo:SO_0001753c obo:SO_0001755c obo:SO_0001752c obo:SO_0001754c obo:SO_0001751c obo:SO_0001750c obo:SO_0001749c obo:SO_0001757c obo:SO_0001748c |
| URI | http://purl.obolibrary.org/obo/SO_0000710 |
|---|---|
| Super-classes |
obo:SO_0000697c |
| Restrictions |
so:has_partop some obo:SO_0000885c |
| URI | http://purl.obolibrary.org/obo/SO_0000711 |
|---|---|
| Super-classes |
obo:SO_0000693c |
| Restrictions |
so:has_qualityop some obo:SO_0000886c |
| URI | http://purl.obolibrary.org/obo/SO_0000712 |
|---|---|
| Super-classes |
obo:SO_0000693c |
| Restrictions |
so:has_qualityop some obo:SO_0000887c |
| URI | http://purl.obolibrary.org/obo/SO_0000713 |
|---|---|
| Super-classes |
obo:SO_0000714c |
| Sub-classes |
obo:SO_0002005c obo:SO_0001158c obo:SO_0002025c obo:SO_0002004c obo:SO_0002258c obo:SO_0001860c obo:SO_0001999c obo:SO_0001258c obo:SO_0000017c obo:SO_0001864c obo:SO_0001673c obo:SO_0001914c obo:SO_0001163c obo:SO_0001667c obo:SO_0001674c obo:SO_0002215c obo:SO_0001853c obo:SO_0001166c obo:SO_0001659c obo:SO_0000172c obo:SO_0002021c obo:SO_0001665c obo:SO_0001666c obo:SO_0001156c |
| URI | http://purl.obolibrary.org/obo/SO_0000714 |
|---|---|
| Super-classes |
obo:SO_0001683c |
| Sub-classes |
obo:SO_0000715c obo:SO_0000713c |
| URI | http://purl.obolibrary.org/obo/SO_0000715 |
|---|---|
| Super-classes |
obo:SO_0000714c |
| Sub-classes |
obo:SO_0000020c obo:SO_0001979c obo:SO_0000026c obo:SO_0000022c obo:SO_0000380c |
| URI | http://purl.obolibrary.org/obo/SO_0000716 |
|---|---|
| Super-classes |
obo:SO_0000079c obo:SO_0000634c |
| Restrictions |
so:has_qualityop some obo:SO_0000879c |
| URI | http://purl.obolibrary.org/obo/SO_0000717 |
|---|---|
| Description |
This term was added after a request by SGD. August 2004. Modified after SO meeting in Cambridge to not include start or stop. |
| Super-classes |
obo:SO_0001410c |
| Sub-classes |
obo:SO_0000718c obo:SO_0002048c obo:SO_0000236c |
| URI | http://purl.obolibrary.org/obo/SO_0000718 |
|---|---|
| Description |
Term requested by Rama from SGD. |
| Super-classes |
obo:SO_0000717c |
| URI | http://purl.obolibrary.org/obo/SO_0000719 |
|---|---|
| Super-classes |
obo:SO_0001876c |
| URI | http://purl.obolibrary.org/obo/SO_0000720 |
|---|---|
| Description |
requested by Michael on 19 Nov 2004. |
| Super-classes |
obo:SO_0000101c |
| Restrictions |
so:has_qualityop some obo:SO_0000784c |
| Sub-classes |
obo:SO_0000799c |
| URI | http://purl.obolibrary.org/obo/SO_0000721 |
|---|---|
| Description |
Requested by Michael, 19 nov 2004. |
| Super-classes |
obo:SO_0000692c |
| Restrictions |
so:transcribed_toop some obo:SO_1001197c |
| URI | http://purl.obolibrary.org/obo/SO_0000722 |
|---|---|
| Description |
Requested by MA nov 19 2004. |
| Super-classes |
obo:SO_0000692c |
| Restrictions |
so:transcribed_toop some obo:SO_0000716c |
| URI | http://purl.obolibrary.org/obo/SO_0000723 |
|---|---|
| Super-classes |
obo:SO_0000298c |
| URI | http://purl.obolibrary.org/obo/SO_0000724 |
|---|---|
| Super-classes |
obo:SO_0000296c |
| URI | http://purl.obolibrary.org/obo/SO_0000725 |
|---|---|
| Description |
Added to bring SO inline with the EMBL, DDBJ, GenBank feature table. Old definition before biosapiens: The coding sequence for an N-terminal domain of a nuclear-encoded organellar protein. This domain is involved in post translational import of the protein into the organelle. |
| Super-classes |
obo:SO_0001527c |
| Restrictions |
so:derives_fromop some obo:SO_0002252c |
| URI | http://purl.obolibrary.org/obo/SO_0000726 |
|---|---|
| Description |
Added to comply with the feature table. A single repeat. |
| Super-classes |
obo:SO_0001411c |
| URI | http://purl.obolibrary.org/obo/SO_0000727 |
|---|---|
| Description |
Requested by Stephen Grossmann Dec 2004. Changed relationship from has_part SO:0000235 TF_binding site to TF_binding_site is part_of SO:0000727 CRM in response to requests from GREEKC initiative in Aug 2020. Removed 3' from definition because 5' UTRs are included as well, notified by Colin Logie of GREEKC. Nov 9 2020. DS Updated name from 'CRM' to 'cis_regulatory_module' on 08 Feb 2021. See GitHub Issue #526. DS Added final sentence to definition as part of GREEKC Feb 16, 2021. See GitHub Issue #534. |
| Super-classes |
obo:SO_0001055c |
| Sub-classes |
obo:SO_0000165c obo:SO_0000037c obo:SO_0000625c obo:SO_0000627c obo:SO_0002308c |
| URI | http://purl.obolibrary.org/obo/SO_0000728 |
|---|---|
| Description |
Intein-mediated protein splicing occurs after mRNA has been translated into a protein. |
| Super-classes |
obo:SO_0100011c |
| URI | http://purl.obolibrary.org/obo/SO_0000729 |
|---|---|
| Super-classes |
obo:SO_0000010c |
| URI | http://purl.obolibrary.org/obo/SO_0000730 |
|---|---|
| Super-classes |
obo:SO_0000143c |
| Restrictions |
so:part_ofop some obo:SO_0000353c |
| URI | http://purl.obolibrary.org/obo/SO_0000731 |
|---|---|
| Description |
Term added because of request by MO people. |
| Super-classes |
obo:SO_0000905c |
| URI | http://purl.obolibrary.org/obo/SO_0000732 |
|---|---|
| Super-classes |
obo:SO_0000905c |
| Sub-classes |
obo:SO_0000910c obo:SO_0000907c obo:SO_0000911c |
| URI | http://purl.obolibrary.org/obo/SO_0000733 |
|---|---|
| Super-classes |
obo:SO_0000400c |
| Sub-classes |
obo:SO_0001185c obo:SO_0001508c obo:SO_0000817c obo:SO_0000782c obo:SO_0000783c obo:SO_0000856c obo:SO_0000237c obo:SO_0000806c obo:SO_0000401c obo:SO_0000814c obo:SO_0000940c obo:SO_0000933c obo:SO_0000784c obo:SO_0000277c obo:SO_0000781c obo:SO_0001234c obo:SO_0000569c obo:SO_0000983c obo:SO_0001684c obo:SO_0000357c obo:SO_0000905c obo:SO_0001029c obo:SO_0000976c |
| URI | http://purl.obolibrary.org/obo/SO_0000734 |
|---|---|
| Description |
Added for the MO people. |
| Super-classes |
obo:SO_0000234c |
| Restrictions |
so:has_qualityop some obo:SO_0000864c |
| URI | http://purl.obolibrary.org/obo/SO_0000735 |
|---|---|
| Super-classes |
obo:SO_0000400c |
| Sub-classes |
obo:SO_0000749c obo:SO_0000736c obo:SO_0000751c obo:SO_0000738c |
| URI | http://purl.obolibrary.org/obo/SO_0000736 |
|---|---|
| Super-classes |
obo:SO_0000735c |
| Sub-classes |
obo:SO_0000084c obo:SO_0000739c obo:SO_0000083c obo:SO_0000737c obo:SO_0000740c |
| URI | http://purl.obolibrary.org/obo/SO_0000737 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0000736c |
| Sub-classes |
obo:SO_0001032c |
| URI | http://purl.obolibrary.org/obo/SO_0000738 |
|---|---|
| Description |
Moved from is_a SO:0000736 (organelle_sequence) when brought to our attention by GitHub issue #489. |
| Super-classes |
obo:SO_0000735c |
| URI | http://purl.obolibrary.org/obo/SO_0000739 |
|---|---|
| Super-classes |
obo:SO_0000736c |
| URI | http://purl.obolibrary.org/obo/SO_0000740 |
|---|---|
| Super-classes |
obo:SO_0000736c |
| Sub-classes |
obo:SO_0000743c obo:SO_0000745c obo:SO_0000744c obo:SO_0000748c obo:SO_0000747c obo:SO_0000746c |
| URI | http://purl.obolibrary.org/obo/SO_0000741 |
|---|---|
| Super-classes |
obo:SO_0001026c |
| Restrictions |
so:has_partop some obo:SO_0000742c so:has_partop some obo:SO_0000980c |
| URI | http://purl.obolibrary.org/obo/SO_0000742 |
|---|---|
| Super-classes |
obo:SO_0001235c |
| URI | http://purl.obolibrary.org/obo/SO_0000743 |
|---|---|
| Super-classes |
obo:SO_0000740c |
| URI | http://purl.obolibrary.org/obo/SO_0000744 |
|---|---|
| Super-classes |
obo:SO_0000740c |
| URI | http://purl.obolibrary.org/obo/SO_0000745 |
|---|---|
| Super-classes |
obo:SO_0000740c |
| Sub-classes |
obo:SO_0001033c |
| URI | http://purl.obolibrary.org/obo/SO_0000746 |
|---|---|
| Super-classes |
obo:SO_0000740c |
| URI | http://purl.obolibrary.org/obo/SO_0000747 |
|---|---|
| Super-classes |
obo:SO_0000740c |
| URI | http://purl.obolibrary.org/obo/SO_0000748 |
|---|---|
| Super-classes |
obo:SO_0000740c |
| URI | http://purl.obolibrary.org/obo/SO_0000749 |
|---|---|
| Super-classes |
obo:SO_0000735c |
| URI | http://purl.obolibrary.org/obo/SO_0000750 |
|---|---|
| Super-classes |
obo:SO_0000296c |
| URI | http://purl.obolibrary.org/obo/SO_0000751 |
|---|---|
| Super-classes |
obo:SO_0000735c |
| Sub-classes |
obo:SO_0000903c |
| URI | http://purl.obolibrary.org/obo/SO_0000752 |
|---|---|
| Description |
Merged into transcriptional_cis_regulatory_region (SO:0001055) on 11 Feb 2021 as part of GREEKC reducing redundancy as we prepare to submit several terms to Ensembl. See GitHub Issue #529. |
| URI | http://purl.obolibrary.org/obo/SO_0000753 |
|---|---|
| Super-classes |
obo:SO_0000695c |
| Restrictions |
so:part_ofop some obo:SO_0000151c |
| Sub-classes |
obo:SO_0000915c obo:SO_0000913c obo:SO_0000914c |
| URI | http://purl.obolibrary.org/obo/SO_0000754 |
|---|---|
| Super-classes |
obo:SO_0000440c |
| URI | http://purl.obolibrary.org/obo/SO_0000755 |
|---|---|
| Super-classes |
obo:SO_0000440c |
| Restrictions |
so:derives_fromop some obo:SO_0000155c |
| URI | http://purl.obolibrary.org/obo/SO_0000756 |
|---|---|
| Super-classes |
obo:SO_0000352c |
| Sub-classes |
obo:SO_0000758c obo:SO_0000757c |
| URI | http://purl.obolibrary.org/obo/SO_0000757 |
|---|---|
| Super-classes |
obo:SO_0000756c |
| URI | http://purl.obolibrary.org/obo/SO_0000758 |
|---|---|
| Super-classes |
obo:SO_0000756c |
| URI | http://purl.obolibrary.org/obo/SO_0000766 |
|---|---|
| Super-classes |
obo:SO_0000253c |
| Restrictions |
so:derives_fromop some obo:SO_0001178c |
| URI | http://purl.obolibrary.org/obo/SO_0000768 |
|---|---|
| Super-classes |
obo:SO_0000155c |
| Sub-classes |
obo:SO_0000779c |
| URI | http://purl.obolibrary.org/obo/SO_0000769 |
|---|---|
| Description |
Added in response to comment from Kelly Williams from Indiana. Nov 2005. |
| Super-classes |
obo:SO_0000847c |
| URI | http://purl.obolibrary.org/obo/SO_0000770 |
|---|---|
| Description |
Added in response to Kelly Williams from Indiana. Date: Nov 2005. |
| Super-classes |
obo:SO_0000847c |
| URI | http://purl.obolibrary.org/obo/SO_0000771 |
|---|---|
| Description |
Added in respose to request by Simon Twigger November 14th 2005. |
| Super-classes |
obo:SO_0001411c |
| URI | http://purl.obolibrary.org/obo/SO_0000772 |
|---|---|
| Description |
Genomic islands are transmissible elements characterized by large size (>10kb). |
| Super-classes |
obo:SO_0001039c |
| Sub-classes |
obo:SO_0000775c obo:SO_0000773c obo:SO_0000774c obo:SO_0000776c obo:SO_0001007c obo:SO_0001049c |
| URI | http://purl.obolibrary.org/obo/SO_0000773 |
|---|---|
| Description |
Nature Reviews Microbiology 2, 414-424 (2004); doi:10.1038 micro 884 GENOMIC ISLANDS IN PATHOGENIC AND ENVIRONMENTAL MICROORGANISMS Ulrich Dobrindt, Bianca Hochhut, Ute Hentschel & Jorg Hacker. |
| Super-classes |
obo:SO_0000772c |
| URI | http://purl.obolibrary.org/obo/SO_0000774 |
|---|---|
| Description |
Genes for phenolic compound degradation in Pseudomonas putida are found on metabolic islands. |
| Super-classes |
obo:SO_0000772c |
| URI | http://purl.obolibrary.org/obo/SO_0000775 |
|---|---|
| Description |
The iron-uptake ability of many pathogens are conveyed by adaptive islands. Nature Reviews Microbiology 2, 414-424 (2004); doi:10.1038 micro 884 GENOMIC ISLANDS IN PATHOGENIC AND ENVIRONMENTAL MICROORGANISMS Ulrich Dobrindt, Bianca Hochhut, Ute Hentschel & Jorg Hacker. |
| Super-classes |
obo:SO_0000772c |
| URI | http://purl.obolibrary.org/obo/SO_0000776 |
|---|---|
| Description |
Nitrogen fixation in Rhizobiaceae species is encoded by symbiosis islands. Evolution of rhizobia by acquisition of a 500-kb symbiosis island that integrates into a phe-tRNA gene. John T. Sullivan and Clive W. Ronso PNAS 1998 Apr 28 95 (9) 5145-5149. |
| Super-classes |
obo:SO_0000772c |
| URI | http://purl.obolibrary.org/obo/SO_0000777 |
|---|---|
| Description |
Added Jan 2006 to allow the annotation of the pseudogenic rRNA by flybase. Non-functional is defined as its transcription is prevented due to one or more mutatations. |
| Super-classes |
obo:SO_0000516c |
| Sub-classes |
obo:SO_0002193c obo:SO_0002194c obo:SO_0002196c obo:SO_0002195c |
| URI | http://purl.obolibrary.org/obo/SO_0000778 |
|---|---|
| Description |
Added Jan 2006 to allow the annotation of the pseudogenic tRNA by flybase. Non-functional is defined as its transcription is prevented due to one or more mutatations. |
| Super-classes |
obo:SO_0000516c |
| Sub-classes |
obo:SO_0002199c obo:SO_0002200c obo:SO_0002198c obo:SO_0002197c |
| URI | http://purl.obolibrary.org/obo/SO_0000779 |
|---|---|
| Description |
Requested by Lynn Crosby Jan 2006. |
| Super-classes |
obo:SO_0000637c obo:SO_0000768c |
| Restrictions |
so:has_qualityop some obo:SO_0000783c |
| URI | http://purl.obolibrary.org/obo/SO_0000780 |
|---|---|
| Description |
Added by KE Jan 2006 to capture the kinds of attributes of TEs |
| URI | http://purl.obolibrary.org/obo/SO_0000781 |
|---|---|
| Super-classes |
obo:SO_0000733c |
| URI | http://purl.obolibrary.org/obo/SO_0000782 |
|---|---|
| Super-classes |
obo:SO_0000733c |
| URI | http://purl.obolibrary.org/obo/SO_0000783 |
|---|---|
| Super-classes |
obo:SO_0000733c |
| URI | http://purl.obolibrary.org/obo/SO_0000784 |
|---|---|
| Super-classes |
obo:SO_0000733c |
| URI | http://purl.obolibrary.org/obo/SO_0000785 |
|---|---|
| Description |
Added in response to Lynn Crosby. A clone insert may be composed of many cloned regions. |
| Super-classes |
obo:SO_0000695c |
| Restrictions |
so:part_ofop some obo:SO_0000753c |
| URI | http://purl.obolibrary.org/obo/SO_0000786 |
|---|---|
| Description |
Added jan 2006 by KE. |
| URI | http://purl.obolibrary.org/obo/SO_0000789 |
|---|---|
| Super-classes |
obo:SO_0000905c |
| Sub-classes |
obo:SO_0000312c |
| URI | http://purl.obolibrary.org/obo/SO_0000790 |
|---|---|
| Super-classes |
obo:SO_0000905c |
| Sub-classes |
obo:SO_0000362c obo:SO_0000415c obo:SO_0000414c obo:SO_0000416c |
| URI | http://purl.obolibrary.org/obo/SO_0000794 |
|---|---|
| Super-classes |
obo:SO_0000411c obo:SO_0000804c |
| Restrictions |
so:has_qualityop some obo:SO_0000783c |
| URI | http://purl.obolibrary.org/obo/SO_0000795 |
|---|---|
| Super-classes |
obo:SO_0000815c |
| Restrictions |
so:has_qualityop some obo:SO_0000814c |
| URI | http://purl.obolibrary.org/obo/SO_0000796 |
|---|---|
| Description |
Modified as requested by Lynn - FB. May 2007. |
| Super-classes |
obo:SO_0000101c |
| Restrictions |
so:derives_fromop some obo:SO_0000151c so:has_qualityop some obo:SO_0000781c |
| URI | http://purl.obolibrary.org/obo/SO_0000797 |
|---|---|
| Super-classes |
obo:SO_0000101c obo:SO_0001038c |
| Restrictions |
so:has_qualityop some obo:SO_0000782c |
| URI | http://purl.obolibrary.org/obo/SO_0000798 |
|---|---|
| Super-classes |
obo:SO_0000101c obo:SO_0000804c |
| Restrictions |
so:has_qualityop some obo:SO_0000783c |
| Sub-classes |
obo:SO_0000799c |
| URI | http://purl.obolibrary.org/obo/SO_0000799 |
|---|---|
| Super-classes |
obo:SO_0000805c obo:SO_0000720c obo:SO_0000798c |
| Restrictions |
so:has_qualityop some obo:SO_0000783c so:has_qualityop some obo:SO_0000784c |
| URI | http://purl.obolibrary.org/obo/SO_0000800 |
|---|---|
| Super-classes |
obo:SO_0001504c |
| URI | http://purl.obolibrary.org/obo/SO_0000801 |
|---|---|
| Super-classes |
obo:SO_0001504c |
| URI | http://purl.obolibrary.org/obo/SO_0000802 |
|---|---|
| Super-classes |
obo:SO_0001504c |
| URI | http://purl.obolibrary.org/obo/SO_0000803 |
|---|---|
| Super-classes |
obo:SO_0001504c |
| URI | http://purl.obolibrary.org/obo/SO_0000804 |
|---|---|
| Super-classes |
obo:SO_0001409c |
| Restrictions |
so:has_qualityop some obo:SO_0000783c |
| Sub-classes |
obo:SO_0001978c obo:SO_0000805c obo:SO_0001644c obo:SO_0000280c obo:SO_0000807c obo:SO_0000794c obo:SO_0000637c obo:SO_0000915c obo:SO_0000798c |
| URI | http://purl.obolibrary.org/obo/SO_0000805 |
|---|---|
| Super-classes |
obo:SO_0000804c |
| Restrictions |
so:has_qualityop some obo:SO_0000783c so:has_qualityop some obo:SO_0000784c |
| Sub-classes |
obo:SO_0000799c obo:SO_0000293c obo:SO_0000281c |
| URI | http://purl.obolibrary.org/obo/SO_0000806 |
|---|---|
| Super-classes |
obo:SO_0000733c |
| URI | http://purl.obolibrary.org/obo/SO_0000807 |
|---|---|
| Super-classes |
obo:SO_0000804c obo:SO_0000324c |
| Restrictions |
so:has_qualityop some obo:SO_0000783c |
| URI | http://purl.obolibrary.org/obo/SO_0000808 |
|---|---|
| Super-classes |
obo:SO_0000317c |
| Restrictions |
so:has_qualityop some obo:SO_0000789c |
| URI | http://purl.obolibrary.org/obo/SO_0000809 |
|---|---|
| Super-classes |
obo:SO_0000317c |
| Restrictions |
so:has_qualityop some obo:SO_0000790c |
| Sub-classes |
obo:SO_0000812c obo:SO_0000813c obo:SO_0000810c obo:SO_0000811c |
| URI | http://purl.obolibrary.org/obo/SO_0000810 |
|---|---|
| Super-classes |
obo:SO_0000809c |
| Restrictions |
so:has_qualityop some obo:SO_0000362c |
| URI | http://purl.obolibrary.org/obo/SO_0000811 |
|---|---|
| Super-classes |
obo:SO_0000809c |
| Restrictions |
so:has_qualityop some obo:SO_0000414c |
| URI | http://purl.obolibrary.org/obo/SO_0000812 |
|---|---|
| Super-classes |
obo:SO_0000809c |
| Restrictions |
so:has_qualityop some obo:SO_0000415c |
| URI | http://purl.obolibrary.org/obo/SO_0000813 |
|---|---|
| Super-classes |
obo:SO_0000809c |
| Restrictions |
so:has_qualityop some obo:SO_0000416c |
| URI | http://purl.obolibrary.org/obo/SO_0000814 |
|---|---|
| Super-classes |
obo:SO_0000733c |
| URI | http://purl.obolibrary.org/obo/SO_0000815 |
|---|---|
| Super-classes |
obo:SO_0000236c |
| Sub-classes |
obo:SO_0000795c |
| URI | http://purl.obolibrary.org/obo/SO_0000816 |
|---|---|
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:has_qualityop some obo:SO_0000814c |
| Sub-classes |
obo:SO_0000818c |
| URI | http://purl.obolibrary.org/obo/SO_0000817 |
|---|---|
| Super-classes |
obo:SO_0000733c |
| URI | http://purl.obolibrary.org/obo/SO_0000818 |
|---|---|
| Super-classes |
obo:SO_0000816c |
| Restrictions |
so:has_qualityop some obo:SO_0000817c |
| URI | http://purl.obolibrary.org/obo/SO_0000819 |
|---|---|
| Super-classes |
obo:SO_0000340c |
| Restrictions |
so:has_originop some obo:SO_0000737c |
| URI | http://purl.obolibrary.org/obo/SO_0000820 |
|---|---|
| Super-classes |
obo:SO_0000340c |
| Restrictions |
so:has_originop some obo:SO_0000745c |
| URI | http://purl.obolibrary.org/obo/SO_0000821 |
|---|---|
| Super-classes |
obo:SO_0000340c |
| Restrictions |
so:has_originop some obo:SO_0000744c |
| URI | http://purl.obolibrary.org/obo/SO_0000822 |
|---|---|
| Super-classes |
obo:SO_0000340c |
| Restrictions |
so:has_originop some obo:SO_0000746c |
| URI | http://purl.obolibrary.org/obo/SO_0000823 |
|---|---|
| Super-classes |
obo:SO_0000340c |
| Restrictions |
so:has_originop some obo:SO_0000747c |
| URI | http://purl.obolibrary.org/obo/SO_0000824 |
|---|---|
| Super-classes |
obo:SO_0000340c |
| Restrictions |
so:has_originop some obo:SO_0000083c |
| URI | http://purl.obolibrary.org/obo/SO_0000825 |
|---|---|
| Super-classes |
obo:SO_0000340c |
| Restrictions |
so:has_originop some obo:SO_0000084c |
| URI | http://purl.obolibrary.org/obo/SO_0000828 |
|---|---|
| Super-classes |
obo:SO_0000340c |
| Restrictions |
so:has_originop some obo:SO_0000738c |
| URI | http://purl.obolibrary.org/obo/SO_0000829 |
|---|---|
| Super-classes |
obo:SO_0000340c |
| Restrictions |
so:has_originop some obo:SO_0000739c |
| URI | http://purl.obolibrary.org/obo/SO_0000830 |
|---|---|
| Description |
This is a manufactured term, that serves the purpose of allow the parts of a chromosome to have an is_a path to the root. |
| Super-classes |
obo:SO_0001411c |
| Restrictions |
so:part_ofop some obo:SO_0000340c |
| Sub-classes |
obo:SO_0002307c obo:SO_0000450c obo:SO_0000341c obo:SO_0000105c obo:SO_0002306c obo:SO_0002263c obo:SO_0000626c obo:SO_0000628c obo:SO_0002262c obo:SO_0000664c |
| URI | http://purl.obolibrary.org/obo/SO_0000831 |
|---|---|
| Description |
A manufactured term used to allow the parts of a gene to have an is_a path to the root. |
| Super-classes |
obo:SO_0001411c |
| Restrictions |
so:member_ofop some obo:SO_0000704c |
| Sub-classes |
obo:SO_0000673c obo:SO_0005836c obo:SO_0002188c |
| URI | http://purl.obolibrary.org/obo/SO_0000832 |
|---|---|
| Description |
This is a manufactured term to allow the parts of promoter to have an is_a path back to the root. |
| URI | http://purl.obolibrary.org/obo/SO_0000833 |
|---|---|
| Description |
This term was added to provide a grouping term for the region parts of transcript, thus giving them an is_a path back to the root. |
| Super-classes |
obo:SO_0001411c |
| Restrictions |
so:part_ofop some obo:SO_0000673c |
| Sub-classes |
obo:SO_0000147c obo:SO_0000834c obo:SO_0000977c obo:SO_0000579c obo:SO_0000835c obo:SO_0000852c obo:SO_0001977c |
| URI | http://purl.obolibrary.org/obo/SO_0000834 |
|---|---|
| Description |
A manufactured term to collect together the parts of a mature transcript and give them an is_a path to the root. |
| Super-classes |
obo:SO_0000833c |
| Sub-classes |
obo:SO_0000836c obo:SO_0000847c obo:SO_0001172c obo:SO_0000930c |
| URI | http://purl.obolibrary.org/obo/SO_0000835 |
|---|---|
| Description |
This term was added to provide a grouping term for the region parts of primary_transcript, thus giving them an is_a path back to the root. |
| Super-classes |
obo:SO_0000833c |
| Restrictions |
so:part_ofop some obo:SO_0000185c |
| Sub-classes |
obo:SO_0000636c obo:SO_0000303c obo:SO_0000838c obo:SO_0000188c obo:SO_0001475c obo:SO_0000162c obo:SO_0000315c obo:SO_0001902c obo:SO_0000841c obo:SO_0001014c obo:SO_0001243c obo:SO_0000616c |
| URI | http://purl.obolibrary.org/obo/SO_0000836 |
|---|---|
| Description |
This term was added to provide a grouping term for the region parts of mRNA, thus giving them an is_a path back to the root. |
| Super-classes |
obo:SO_0000834c |
| Restrictions |
so:part_ofop some obo:SO_0000234c |
| Sub-classes |
obo:SO_1001268c obo:SO_0000851c obo:SO_0000035c obo:SO_0000139c obo:SO_0000203c obo:SO_0001210c obo:SO_0000629c obo:SO_0002168c obo:SO_0000316c obo:SO_0000837c |
| URI | http://purl.obolibrary.org/obo/SO_0000837 |
|---|---|
| Description |
A region of UTR. This term is a grouping term to allow the parts of UTR to have an is_a path to the root. |
| Super-classes |
obo:SO_0000836c |
| Sub-classes |
obo:SO_0001181c obo:SO_0001180c obo:SO_0002234c obo:SO_0000630c obo:SO_0001182c |
| URI | http://purl.obolibrary.org/obo/SO_0000838 |
|---|---|
| Description |
To allow transcribed_spacer_region to have a path to the root. |
| Super-classes |
obo:SO_0000835c |
| Restrictions |
so:part_ofop some obo:SO_0000209c |
| Sub-classes |
obo:SO_0000638c |
| URI | http://purl.obolibrary.org/obo/SO_0000839 |
|---|---|
| Description |
Added to allow the polypeptide regions to have is_a paths back to the root. |
| Super-classes |
obo:SO_0001411c |
| Restrictions |
so:part_ofop some obo:SO_0000104c |
| Sub-classes |
obo:SO_0001146c obo:SO_0001956c obo:SO_0001832c obo:SO_0001066c obo:SO_0100013c obo:SO_0001955c obo:SO_0001063c obo:SO_0100011c obo:SO_0002224c obo:SO_0001527c obo:SO_0001070c obo:SO_0000419c obo:SO_0100021c |
| URI | http://purl.obolibrary.org/obo/SO_0000840 |
|---|---|
| Description |
A manufactured to group the parts of repeats, to give them an is_a path back to the root. |
| Super-classes |
obo:SO_0001412c |
| Sub-classes |
obo:SO_0001050c obo:SO_0000433c obo:SO_0000848c obo:SO_0001054c |
| URI | http://purl.obolibrary.org/obo/SO_0000841 |
|---|---|
| Description |
A terms added to allow the parts of introns to have is_a paths to the root. |
| Super-classes |
obo:SO_0000835c |
| Restrictions |
so:part_ofop some obo:SO_0000662c |
| Sub-classes |
obo:SO_0000612c obo:SO_0000611c |
| URI | http://purl.obolibrary.org/obo/SO_0000842 |
|---|---|
| Super-classes |
obo:SO_0001411c |
| Restrictions |
so:part_ofop some obo:SO_0000704c |
| Sub-classes |
obo:SO_0002026c obo:SO_0000997c obo:SO_0000167c obo:SO_3000000c obo:SO_0000183c |
| URI | http://purl.obolibrary.org/obo/SO_0000843 |
|---|---|
| Description |
This is a manufactured term to allow the parts of bacterial_RNApol_promoter to have an is_a path back to the root. |
| URI | http://purl.obolibrary.org/obo/SO_0000844 |
|---|---|
| Description |
This is a manufactured term to allow the parts of RNApol_II_promoter to have an is_a path back to the root. |
| URI | http://purl.obolibrary.org/obo/SO_0000845 |
|---|---|
| Description |
This is a manufactured term to allow the parts of RNApol_III_promoter_type_1 to have an is_a path back to the root. |
| URI | http://purl.obolibrary.org/obo/SO_0000846 |
|---|---|
| Description |
This is a manufactured term to allow the parts of RNApol_III_promoter_type_2 to have an is_a path back to the root. |
| URI | http://purl.obolibrary.org/obo/SO_0000847 |
|---|---|
| Description |
This term was added to provide a grouping term for the region parts of tmRNA, thus giving them an is_a path back to the root. |
| Super-classes |
obo:SO_0000834c |
| Restrictions |
so:part_ofop some obo:SO_0000584c |
| Sub-classes |
obo:SO_0000770c obo:SO_0000769c |
| URI | http://purl.obolibrary.org/obo/SO_0000848 |
|---|---|
| Super-classes |
obo:SO_0000840c |
| Restrictions |
so:part_ofop some obo:SO_0000286c |
| Sub-classes |
obo:SO_0000423c obo:SO_0000424c obo:SO_0000849c obo:SO_0000850c obo:SO_0000422c |
| URI | http://purl.obolibrary.org/obo/SO_0000849 |
|---|---|
| Super-classes |
obo:SO_0000848c |
| Restrictions |
so:part_ofop some obo:SO_0000426c |
| Sub-classes |
obo:SO_0000431c obo:SO_0000432c obo:SO_0000430c |
| URI | http://purl.obolibrary.org/obo/SO_0000850 |
|---|---|
| Super-classes |
obo:SO_0000848c |
| Restrictions |
so:part_ofop some obo:SO_0000425c |
| Sub-classes |
obo:SO_0000427c obo:SO_0000429c obo:SO_0000428c |
| URI | http://purl.obolibrary.org/obo/SO_0000851 |
|---|---|
| Super-classes |
obo:SO_0000836c |
| Restrictions |
so:part_ofop some obo:SO_0000316c |
| Sub-classes |
obo:SO_0002250c obo:SO_0000360c obo:SO_0002251c obo:SO_0000327c obo:SO_0002252c obo:SO_0002249c obo:SO_0000323c |
| URI | http://purl.obolibrary.org/obo/SO_0000852 |
|---|---|
| Super-classes |
obo:SO_0000833c |
| Restrictions |
so:part_ofop some obo:SO_0000147c |
| Sub-classes |
obo:SO_0002058c obo:SO_0001215c obo:SO_0001214c |
| URI | http://purl.obolibrary.org/obo/SO_0000853 |
|---|---|
| Super-classes |
obo:SO_0000330c |
| Restrictions |
so:has_qualityop some obo:SO_0000857c |
| Sub-classes |
obo:SO_0000855c obo:SO_0000854c |
| URI | http://purl.obolibrary.org/obo/SO_0000854 |
|---|---|
| Description |
A term to be used in conjunction with the paralogous_to relationship. |
| Super-classes |
obo:SO_0000853c |
| Restrictions |
so:has_qualityop some obo:SO_0000859c |
| URI | http://purl.obolibrary.org/obo/SO_0000855 |
|---|---|
| Description |
This term should be used in conjunction with the similarity relationships defined in SO. |
| Super-classes |
obo:SO_0000853c |
| Restrictions |
so:has_qualityop some obo:SO_0000858c |
| URI | http://purl.obolibrary.org/obo/SO_0000856 |
|---|---|
| Super-classes |
obo:SO_0000733c |
| Sub-classes |
obo:SO_0000860c obo:SO_0000857c |
| URI | http://purl.obolibrary.org/obo/SO_0000857 |
|---|---|
| Super-classes |
obo:SO_0000856c |
| Sub-classes |
obo:SO_0000858c obo:SO_0000859c |
| URI | http://purl.obolibrary.org/obo/SO_0000858 |
|---|---|
| Super-classes |
obo:SO_0000857c |
| URI | http://purl.obolibrary.org/obo/SO_0000859 |
|---|---|
| Super-classes |
obo:SO_0000857c |
| URI | http://purl.obolibrary.org/obo/SO_0000860 |
|---|---|
| Super-classes |
obo:SO_0000856c |
| URI | http://purl.obolibrary.org/obo/SO_0000861 |
|---|---|
| Super-classes |
obo:SO_0000185c |
| Restrictions |
so:adjacent_toop some obo:SO_0000581c so:has_qualityop some obo:SO_0000146c |
| URI | http://purl.obolibrary.org/obo/SO_0000862 |
|---|---|
| Super-classes |
obo:SO_0000234c |
| Restrictions |
so:has_qualityop some obo:SO_0000146c so:adjacent_toop some obo:SO_0000581c |
| URI | http://purl.obolibrary.org/obo/SO_0000863 |
|---|---|
| Super-classes |
obo:SO_0000237c |
| Sub-classes |
obo:SO_0000865c obo:SO_0000864c obo:SO_0000246c obo:SO_0001817c obo:SO_0000881c |
| URI | http://purl.obolibrary.org/obo/SO_0000864 |
|---|---|
| Super-classes |
obo:SO_0000863c |
| URI | http://purl.obolibrary.org/obo/SO_0000865 |
|---|---|
| Super-classes |
obo:SO_0000863c |
| Sub-classes |
obo:SO_0000867c obo:SO_0000869c obo:SO_0000866c obo:SO_0000868c |
| URI | http://purl.obolibrary.org/obo/SO_0000866 |
|---|---|
| Super-classes |
obo:SO_0000865c |
| URI | http://purl.obolibrary.org/obo/SO_0000867 |
|---|---|
| Super-classes |
obo:SO_0000865c |
| URI | http://purl.obolibrary.org/obo/SO_0000868 |
|---|---|
| Super-classes |
obo:SO_0000865c |
| URI | http://purl.obolibrary.org/obo/SO_0000869 |
|---|---|
| Super-classes |
obo:SO_0000865c |
| URI | http://purl.obolibrary.org/obo/SO_0000870 |
|---|---|
| Super-classes |
obo:SO_0000237c |
| URI | http://purl.obolibrary.org/obo/SO_0000871 |
|---|---|
| Super-classes |
obo:SO_0000234c |
| Restrictions |
so:has_qualityop some obo:SO_0000246c so:adjacent_toop some obo:SO_0000610c |
| URI | http://purl.obolibrary.org/obo/SO_0000872 |
|---|---|
| Super-classes |
obo:SO_0000234c obo:SO_0000479c |
| Restrictions |
so:adjacent_toop some obo:SO_0000636c so:has_qualityop some obo:SO_0000870c |
| URI | http://purl.obolibrary.org/obo/SO_0000873 |
|---|---|
| Super-classes |
obo:SO_0000673c |
| Restrictions |
so:has_partop some obo:SO_0000977c so:guided_byop some obo:SO_0000602c so:has_qualityop some obo:SO_0000116c |
| Sub-classes |
obo:SO_0000874c obo:SO_0000929c |
| URI | http://purl.obolibrary.org/obo/SO_0000874 |
|---|---|
| Super-classes |
obo:SO_0000873c |
| URI | http://purl.obolibrary.org/obo/SO_0000875 |
|---|---|
| Super-classes |
obo:SO_0000277c |
| URI | http://purl.obolibrary.org/obo/SO_0000876 |
|---|---|
| Super-classes |
obo:SO_0000277c |
| URI | http://purl.obolibrary.org/obo/SO_0000877 |
|---|---|
| Super-classes |
obo:SO_0000237c |
| URI | http://purl.obolibrary.org/obo/SO_0000878 |
|---|---|
| Super-classes |
obo:SO_0000237c |
| URI | http://purl.obolibrary.org/obo/SO_0000879 |
|---|---|
| Super-classes |
obo:SO_0000880c |
| URI | http://purl.obolibrary.org/obo/SO_0000880 |
|---|---|
| Super-classes |
obo:SO_0000237c |
| Sub-classes |
obo:SO_0000879c |
| URI | http://purl.obolibrary.org/obo/SO_0000881 |
|---|---|
| Super-classes |
obo:SO_0000863c |
| Sub-classes |
obo:SO_0000886c obo:SO_0000887c obo:SO_0000882c |
| URI | http://purl.obolibrary.org/obo/SO_0000882 |
|---|---|
| Super-classes |
obo:SO_0000881c |
| URI | http://purl.obolibrary.org/obo/SO_0000883 |
|---|---|
| Super-classes |
obo:SO_0000145c |
| Sub-classes |
obo:SO_0000885c obo:SO_0000884c |
| URI | http://purl.obolibrary.org/obo/SO_0000884 |
|---|---|
| Super-classes |
obo:SO_0000883c |
| URI | http://purl.obolibrary.org/obo/SO_0000885 |
|---|---|
| Super-classes |
obo:SO_0000883c |
| URI | http://purl.obolibrary.org/obo/SO_0000886 |
|---|---|
| Super-classes |
obo:SO_0000881c |
| URI | http://purl.obolibrary.org/obo/SO_0000887 |
|---|---|
| Super-classes |
obo:SO_0000881c |
| Sub-classes |
obo:SO_1001263c obo:SO_1001262c |
| URI | http://purl.obolibrary.org/obo/SO_0000888 |
|---|---|
| Super-classes |
obo:SO_0000898c |
| Restrictions |
so:has_qualityop some obo:SO_0000135c |
| URI | http://purl.obolibrary.org/obo/SO_0000889 |
|---|---|
| Super-classes |
obo:SO_0000898c |
| Restrictions |
so:has_qualityop some obo:SO_0000136c |
| URI | http://purl.obolibrary.org/obo/SO_0000890 |
|---|---|
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:has_qualityop some obo:SO_0000130c |
| URI | http://purl.obolibrary.org/obo/SO_0000891 |
|---|---|
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:has_qualityop some obo:SO_0000473c |
| URI | http://purl.obolibrary.org/obo/SO_0000892 |
|---|---|
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:has_qualityop some obo:SO_0000475c |
| URI | http://purl.obolibrary.org/obo/SO_0000893 |
|---|---|
| Super-classes |
obo:SO_0000126c |
| Sub-classes |
obo:SO_0001221c obo:SO_0000894c obo:SO_0001220c |
| URI | http://purl.obolibrary.org/obo/SO_0000894 |
|---|---|
| Super-classes |
obo:SO_0000893c |
| Sub-classes |
obo:SO_0000895c |
| URI | http://purl.obolibrary.org/obo/SO_0000895 |
|---|---|
| Super-classes |
obo:SO_0000894c |
| URI | http://purl.obolibrary.org/obo/SO_0000896 |
|---|---|
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:has_qualityop some obo:SO_0000131c |
| URI | http://purl.obolibrary.org/obo/SO_0000897 |
|---|---|
| Super-classes |
obo:SO_0000898c |
| Restrictions |
so:has_qualityop some obo:SO_0000137c |
| URI | http://purl.obolibrary.org/obo/SO_0000898 |
|---|---|
| Super-classes |
obo:SO_0000704c obo:SO_0001720c |
| Restrictions |
so:has_qualityop some obo:SO_0000133c |
| Sub-classes |
obo:SO_0000897c obo:SO_0000888c obo:SO_0000889c obo:SO_0000138c |
| URI | http://purl.obolibrary.org/obo/SO_0000902 |
|---|---|
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:has_qualityop some obo:SO_0000781c |
| Sub-classes |
obo:SO_0000363c |
| URI | http://purl.obolibrary.org/obo/SO_0000903 |
|---|---|
| Super-classes |
obo:SO_0000751c |
| URI | http://purl.obolibrary.org/obo/SO_0000904 |
|---|---|
| Super-classes |
obo:SO_0000133c |
| URI | http://purl.obolibrary.org/obo/SO_0000905 |
|---|---|
| Description |
This term is the hypernym of attributes and should not be annotated to. |
| Super-classes |
obo:SO_0000733c |
| Sub-classes |
obo:SO_0000993c obo:SO_0001004c obo:SO_0000789c obo:SO_0000732c obo:SO_0000906c obo:SO_0001499c obo:SO_0000731c obo:SO_0000790c |
| URI | http://purl.obolibrary.org/obo/SO_0000906 |
|---|---|
| Super-classes |
obo:SO_0000905c |
| URI | http://purl.obolibrary.org/obo/SO_0000907 |
|---|---|
| Super-classes |
obo:SO_0000732c |
| Sub-classes |
obo:SO_0000909c obo:SO_0000908c |
| URI | http://purl.obolibrary.org/obo/SO_0000908 |
|---|---|
| Super-classes |
obo:SO_0000907c |
| URI | http://purl.obolibrary.org/obo/SO_0000909 |
|---|---|
| Super-classes |
obo:SO_0000907c |
| URI | http://purl.obolibrary.org/obo/SO_0000910 |
|---|---|
| Super-classes |
obo:SO_0000732c |
| URI | http://purl.obolibrary.org/obo/SO_0000911 |
|---|---|
| Super-classes |
obo:SO_0000732c |
| URI | http://purl.obolibrary.org/obo/SO_0000912 |
|---|---|
| Super-classes |
obo:SO_0001128c |
| Sub-classes |
obo:SO_0001130c obo:SO_0001131c obo:SO_0001129c obo:SO_0001132c |
| URI | http://purl.obolibrary.org/obo/SO_0000913 |
|---|---|
| Super-classes |
obo:SO_0000753c |
| Restrictions |
so:has_qualityop some obo:SO_0000756c |
| URI | http://purl.obolibrary.org/obo/SO_0000914 |
|---|---|
| Super-classes |
obo:SO_0000753c |
| Restrictions |
so:has_qualityop some obo:SO_0000991c |
| Sub-classes |
obo:SO_0000992c |
| URI | http://purl.obolibrary.org/obo/SO_0000915 |
|---|---|
| Super-classes |
obo:SO_0000753c obo:SO_0000804c |
| Restrictions |
so:has_qualityop some obo:SO_0000783c |
| URI | http://purl.obolibrary.org/obo/SO_0000917 |
|---|---|
| Description |
The insertion and deletion of uridine (U) residues, usually within coding regions of mRNA transcripts of cryptogenes in the mitochondrial genome of kinetoplastid protozoa. |
| URI | http://purl.obolibrary.org/obo/SO_0000918 |
|---|---|
| Description |
The insertion and deletion of uridine (U) residues, usually within coding regions of mRNA transcripts of cryptogenes in the mitochondrial genome of kinetoplastid protozoa. |
| URI | http://purl.obolibrary.org/obo/SO_0000924 |
|---|---|
| Description |
The type of RNA editing found in the mitochondria of Myxomycota, characterized by the insertion of mono- and dinucleotides in RNAs relative to their mtDNA template and in addition, C to U base conversion. The most common mononucleotide insertion is cytidine, although a number of uridine mononucleotides are inserted at specific sites. Adenine and guanine have not been observed in mononucleotide insertions. Five different dinucleotide insertions have been observed, GC, GU, CU, AU and AA. Both mono- and dinucleotide insertions create open reading frames in mRNA and contribute to highly conserved structural features of rRNAs and tRNAs. |
| URI | http://purl.obolibrary.org/obo/SO_0000925 |
|---|---|
| Description |
The type of RNA editing found in the mitochondria of Myxomycota, characterized by the insertion of mono- and dinucleotides in RNAs relative to their mtDNA template and in addition, C to U base conversion. The most common mononucleotide insertion is cytidine, although a number of uridine mononucleotides are inserted at specific sites. Adenine and guanine have not been observed in mononucleotide insertions. Five different dinucleotide insertions have been observed, GC, GU, CU, AU and AA. Both mono- and dinucleotide insertions create open reading frames in mRNA and contribute to highly conserved structural features of rRNAs and tRNAs. |
| URI | http://purl.obolibrary.org/obo/SO_0000926 |
|---|---|
| Description |
The type of RNA editing found in the mitochondria of Myxomycota, characterized by the insertion of mono- and dinucleotides in RNAs relative to their mtDNA template and in addition, C to U base conversion. The most common mononucleotide insertion is cytidine, although a number of uridine mononucleotides are inserted at specific sites. Adenine and guanine have not been observed in mononucleotide insertions. Five different dinucleotide insertions have been observed, GC, GU, CU, AU and AA. Both mono- and dinucleotide insertions create open reading frames in mRNA and contribute to highly conserved structural features of rRNAs and tRNAs. |
| URI | http://purl.obolibrary.org/obo/SO_0000927 |
|---|---|
| Description |
The type of RNA editing found in the mitochondria of Myxomycota, characterized by the insertion of mono- and dinucleotides in RNAs relative to their mtDNA template and in addition, C to U base conversion. The most common mononucleotide insertion is cytidine, although a number of uridine mononucleotides are inserted at specific sites. Adenine and guanine have not been observed in mononucleotide insertions. Five different dinucleotide insertions have been observed, GC, GU, CU, AU and AA. Both mono- and dinucleotide insertions create open reading frames in mRNA and contribute to highly conserved structural features of rRNAs and tRNAs. |
| URI | http://purl.obolibrary.org/obo/SO_0000928 |
|---|---|
| Description |
The type of RNA editing found in the mitochondria of Myxomycota, characterized by the insertion of mono- and dinucleotides in RNAs relative to their mtDNA template and in addition, C to U base conversion. The most common mononucleotide insertion is cytidine, although a number of uridine mononucleotides are inserted at specific sites. Adenine and guanine have not been observed in mononucleotide insertions. Five different dinucleotide insertions have been observed, GC, GU, CU, AU and AA. Both mono- and dinucleotide insertions create open reading frames in mRNA and contribute to highly conserved structural features of rRNAs and tRNAs. |
| URI | http://purl.obolibrary.org/obo/SO_0000929 |
|---|---|
| Super-classes |
obo:SO_0000234c obo:SO_0000873c |
| Restrictions |
so:has_qualityop some obo:SO_0000116c |
| URI | http://purl.obolibrary.org/obo/SO_0000930 |
|---|---|
| Super-classes |
obo:SO_0000834c |
| Restrictions |
so:part_ofop some obo:SO_0000602c |
| Sub-classes |
obo:SO_0000978c obo:SO_0000931c |
| URI | http://purl.obolibrary.org/obo/SO_0000931 |
|---|---|
| Super-classes |
obo:SO_0000930c |
| URI | http://purl.obolibrary.org/obo/SO_0000932 |
|---|---|
| Super-classes |
obo:SO_0000120c |
| URI | http://purl.obolibrary.org/obo/SO_0000933 |
|---|---|
| Super-classes |
obo:SO_0000733c |
| URI | http://purl.obolibrary.org/obo/SO_0000934 |
|---|---|
| Super-classes |
obo:SO_0001655c |
| URI | http://purl.obolibrary.org/obo/SO_0000935 |
|---|---|
| Super-classes |
obo:SO_0000316c |
| Restrictions |
so:has_qualityop some obo:SO_0000116c |
| URI | http://purl.obolibrary.org/obo/SO_0000936 |
|---|---|
| Super-classes |
obo:SO_0000301c |
| Sub-classes |
obo:SO_0000572c obo:SO_0000574c obo:SO_0000510c obo:SO_0000576c |
| URI | http://purl.obolibrary.org/obo/SO_0000938 |
|---|---|
| Super-classes |
obo:SO_0000301c |
| Sub-classes |
obo:SO_0000491c obo:SO_0000531c obo:SO_0000505c obo:SO_0000528c obo:SO_0000523c obo:SO_0000521c obo:SO_0000488c obo:SO_0000541c obo:SO_0000540c obo:SO_0000532c obo:SO_0000504c obo:SO_0000519c obo:SO_0000539c obo:SO_0000487c obo:SO_0000489c obo:SO_0000524c obo:SO_0000527c obo:SO_0000529c obo:SO_0000506c obo:SO_0000508c obo:SO_0000520c obo:SO_0000522c obo:SO_0000485c obo:SO_0000530c obo:SO_0000566c obo:SO_0000490c obo:SO_0000518c obo:SO_0000525c obo:SO_0000542c obo:SO_0000565c obo:SO_0000564c |
| URI | http://purl.obolibrary.org/obo/SO_0000939 |
|---|---|
| Super-classes |
obo:SO_0000301c |
| Sub-classes |
obo:SO_0000538c obo:SO_0000302c obo:SO_0000562c obo:SO_0000492c obo:SO_0000561c |
| URI | http://purl.obolibrary.org/obo/SO_0000940 |
|---|---|
| Super-classes |
obo:SO_0000733c |
| URI | http://purl.obolibrary.org/obo/SO_0000941 |
|---|---|
| Super-classes |
obo:SO_0000456c |
| URI | http://purl.obolibrary.org/obo/SO_0000942 |
|---|---|
| Super-classes |
obo:SO_0000946c |
| Restrictions |
so:part_ofop some obo:SO_0001042c |
| URI | http://purl.obolibrary.org/obo/SO_0000943 |
|---|---|
| Super-classes |
obo:SO_0000946c |
| URI | http://purl.obolibrary.org/obo/SO_0000944 |
|---|---|
| Super-classes |
obo:SO_0000946c |
| URI | http://purl.obolibrary.org/obo/SO_0000945 |
|---|---|
| Super-classes |
obo:SO_0000946c |
| URI | http://purl.obolibrary.org/obo/SO_0000946 |
|---|---|
| Super-classes |
obo:SO_0000342c |
| Sub-classes |
obo:SO_0000944c obo:SO_0000942c obo:SO_0001043c obo:SO_0000950c obo:SO_0000943c obo:SO_0000367c obo:SO_0000945c |
| URI | http://purl.obolibrary.org/obo/SO_0000947 |
|---|---|
| Super-classes |
obo:SO_0000342c |
| Sub-classes |
obo:SO_0000949c obo:SO_0000346c |
| URI | http://purl.obolibrary.org/obo/SO_0000948 |
|---|---|
| Description |
A target region for site-specific inversion of a DNA region and which carries binding sites for a site-specific recombinase and accessory proteins as well as the site for specific cleavage by the recombinase. |
| Super-classes |
obo:SO_0000342c |
| Sub-classes |
obo:SO_0000350c |
| URI | http://purl.obolibrary.org/obo/SO_0000949 |
|---|---|
| Super-classes |
obo:SO_0000947c |
| URI | http://purl.obolibrary.org/obo/SO_0000950 |
|---|---|
| Super-classes |
obo:SO_0000946c |
| Restrictions |
so:part_ofop some obo:SO_0000365c |
| URI | http://purl.obolibrary.org/obo/SO_0000951 |
|---|---|
| Super-classes |
obo:SO_0000141c |
| Sub-classes |
obo:SO_0000615c obo:SO_0002213c |
| URI | http://purl.obolibrary.org/obo/SO_0000952 |
|---|---|
| Super-classes |
obo:SO_0000296c |
| URI | http://purl.obolibrary.org/obo/SO_0000953 |
|---|---|
| Super-classes |
obo:SO_0000296c |
| URI | http://purl.obolibrary.org/obo/SO_0000954 |
|---|---|
| Super-classes |
obo:SO_0000340c |
| Restrictions |
so:has_qualityop some obo:SO_0000352c |
| Sub-classes |
obo:SO_0000956c obo:SO_0000955c |
| URI | http://purl.obolibrary.org/obo/SO_0000955 |
|---|---|
| Super-classes |
obo:SO_0000954c |
| Restrictions |
so:has_qualityop some obo:SO_0000985c |
| Sub-classes |
obo:SO_0000958c obo:SO_0000957c |
| URI | http://purl.obolibrary.org/obo/SO_0000956 |
|---|---|
| Super-classes |
obo:SO_0000954c |
| Restrictions |
so:has_qualityop some obo:SO_0000984c |
| Sub-classes |
obo:SO_0000960c obo:SO_0000959c |
| URI | http://purl.obolibrary.org/obo/SO_0000957 |
|---|---|
| Super-classes |
obo:SO_0000955c |
| Restrictions |
so:has_qualityop some obo:SO_0000987c |
| URI | http://purl.obolibrary.org/obo/SO_0000958 |
|---|---|
| Super-classes |
obo:SO_0000955c |
| Restrictions |
so:has_qualityop some obo:SO_0000988c |
| URI | http://purl.obolibrary.org/obo/SO_0000959 |
|---|---|
| Super-classes |
obo:SO_0000956c |
| Restrictions |
so:has_qualityop some obo:SO_0000987c |
| URI | http://purl.obolibrary.org/obo/SO_0000960 |
|---|---|
| Super-classes |
obo:SO_0000956c |
| Restrictions |
so:has_qualityop some obo:SO_0000988c |
| URI | http://purl.obolibrary.org/obo/SO_0000961 |
|---|---|
| Super-classes |
obo:SO_0000340c |
| Restrictions |
so:has_qualityop some obo:SO_0000356c |
| Sub-classes |
obo:SO_0000965c obo:SO_0000962c |
| URI | http://purl.obolibrary.org/obo/SO_0000962 |
|---|---|
| Super-classes |
obo:SO_0000961c |
| Restrictions |
so:has_qualityop some obo:SO_0000984c |
| Sub-classes |
obo:SO_0000963c obo:SO_0000966c |
| URI | http://purl.obolibrary.org/obo/SO_0000963 |
|---|---|
| Super-classes |
obo:SO_0000962c |
| Restrictions |
so:has_qualityop some obo:SO_0000987c |
| URI | http://purl.obolibrary.org/obo/SO_0000964 |
|---|---|
| Super-classes |
obo:SO_0000965c |
| Restrictions |
so:has_qualityop some obo:SO_0000987c |
| URI | http://purl.obolibrary.org/obo/SO_0000965 |
|---|---|
| Super-classes |
obo:SO_0000961c |
| Restrictions |
so:has_qualityop some obo:SO_0000985c |
| Sub-classes |
obo:SO_0000964c obo:SO_0000967c |
| URI | http://purl.obolibrary.org/obo/SO_0000966 |
|---|---|
| Super-classes |
obo:SO_0000962c |
| Restrictions |
so:has_qualityop some obo:SO_0000988c |
| URI | http://purl.obolibrary.org/obo/SO_0000967 |
|---|---|
| Super-classes |
obo:SO_0000965c |
| Restrictions |
so:has_qualityop some obo:SO_0000988c |
| URI | http://purl.obolibrary.org/obo/SO_0000968 |
|---|---|
| Description |
This has been obsoleted as it represents a process. replaced_by: GO:0034961. |
| URI | http://purl.obolibrary.org/obo/SO_0000969 |
|---|---|
| Description |
This has been obsoleted as it represents a process. replaced_by: GO:0070581. |
| URI | http://purl.obolibrary.org/obo/SO_0000970 |
|---|---|
| Description |
This has been obsoleted as it represents a process. replaced_by: GO:0070582 |
| URI | http://purl.obolibrary.org/obo/SO_0000971 |
|---|---|
| Description |
This has been obsoleted as it represents a process. replaced_by: GO:0006260. |
| URI | http://purl.obolibrary.org/obo/SO_0000972 |
|---|---|
| Description |
This has been obsoleted as it represents a process. replaced_by: GO:0034961. |
| URI | http://purl.obolibrary.org/obo/SO_0000973 |
|---|---|
| Super-classes |
obo:SO_0000208c |
| URI | http://purl.obolibrary.org/obo/SO_0000975 |
|---|---|
| Super-classes |
obo:SO_0000089c |
| Restrictions |
so:part_ofop some obo:SO_0000980c |
| URI | http://purl.obolibrary.org/obo/SO_0000976 |
|---|---|
| Super-classes |
obo:SO_0000733c |
| URI | http://purl.obolibrary.org/obo/SO_0000977 |
|---|---|
| Description |
Part of an edited transcript only. |
| Super-classes |
obo:SO_0000833c |
| URI | http://purl.obolibrary.org/obo/SO_0000978 |
|---|---|
| Super-classes |
obo:SO_0000930c |
| URI | http://purl.obolibrary.org/obo/SO_0000979 |
|---|---|
| Super-classes |
obo:SO_0000011c |
| URI | http://purl.obolibrary.org/obo/SO_0000980 |
|---|---|
| Super-classes |
obo:SO_0001235c |
| URI | http://purl.obolibrary.org/obo/SO_0000981 |
|---|---|
| Super-classes |
obo:SO_0000614c |
| URI | http://purl.obolibrary.org/obo/SO_0000982 |
|---|---|
| Super-classes |
obo:SO_0000614c |
| URI | http://purl.obolibrary.org/obo/SO_0000983 |
|---|---|
| Description |
Attributes added to describe the different kinds of replicon. SO workshop, September 2006. |
| Super-classes |
obo:SO_0000733c |
| Sub-classes |
obo:SO_0000984c obo:SO_0000985c |
| URI | http://purl.obolibrary.org/obo/SO_0000984 |
|---|---|
| Description |
Attributes added to describe the different kinds of replicon. SO workshop, September 2006. |
| Super-classes |
obo:SO_0000983c |
| URI | http://purl.obolibrary.org/obo/SO_0000985 |
|---|---|
| Description |
Attributes added to describe the different kinds of replicon. SO workshop, September 2006. |
| Super-classes |
obo:SO_0000983c |
| URI | http://purl.obolibrary.org/obo/SO_0000986 |
|---|---|
| Description |
Attributes added to describe the different kinds of replicon. SO workshop, September 2006. |
| Super-classes |
obo:SO_0000443c |
| Sub-classes |
obo:SO_0000987c obo:SO_0000988c |
| URI | http://purl.obolibrary.org/obo/SO_0000987 |
|---|---|
| Description |
Attributes added to describe the different kinds of replicon. SO workshop, September 2006. |
| Super-classes |
obo:SO_0000986c |
| URI | http://purl.obolibrary.org/obo/SO_0000988 |
|---|---|
| Description |
Attributes added to describe the different kinds of replicon. SO workshop, September 2006. |
| Super-classes |
obo:SO_0000986c |
| URI | http://purl.obolibrary.org/obo/SO_0000989 |
|---|---|
| Super-classes |
obo:SO_0000655c |
| URI | http://purl.obolibrary.org/obo/SO_0000990 |
|---|---|
| Description |
Requested by Karen Pilcher - Dictybase. song-Term Tracker-1574577. |
| Super-classes |
obo:SO_0000655c |
| URI | http://purl.obolibrary.org/obo/SO_0000991 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0000352c |
| URI | http://purl.obolibrary.org/obo/SO_0000992 |
|---|---|
| Description |
Requested by Andy Schroder - Flybase Harvard, Nov 2006. |
| Super-classes |
obo:SO_0000914c |
| Restrictions |
so:derives_fromop some obo:SO_0000153c |
| URI | http://purl.obolibrary.org/obo/SO_0000993 |
|---|---|
| Description |
Term added Dec 06 to comply with mapping to MGED terms. It should be used to generate consensus regions. The specific cross product terms they require are consensus_region and consensus_mRNA. |
| Super-classes |
obo:SO_0000905c |
| URI | http://purl.obolibrary.org/obo/SO_0000994 |
|---|---|
| Description |
DO not obsolete without considering MGED mapping. |
| Super-classes |
obo:SO_0001410c |
| Restrictions |
so:has_qualityop some obo:SO_0000993c |
| Sub-classes |
obo:SO_0000995c obo:SO_0001991c obo:SO_0001931c |
| URI | http://purl.obolibrary.org/obo/SO_0000995 |
|---|---|
| Description |
DO not obsolete without considering MGED mapping. |
| Super-classes |
obo:SO_0000994c obo:SO_0000234c |
| Restrictions |
so:has_qualityop some obo:SO_0000993c |
| URI | http://purl.obolibrary.org/obo/SO_0000996 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:has_qualityop some obo:SO_0000732c |
| URI | http://purl.obolibrary.org/obo/SO_0000997 |
|---|---|
| Description |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. |
| Super-classes |
obo:SO_0000842c |
| Restrictions |
so:has_qualityop some obo:SO_0000731c |
| URI | http://purl.obolibrary.org/obo/SO_0000998 |
|---|---|
| Super-classes |
obo:SO_0001419c |
| URI | http://purl.obolibrary.org/obo/SO_0000999 |
|---|---|
| Description |
Requested by Keith Boroevich December, 2006. |
| Super-classes |
obo:SO_0000150c |
| Restrictions |
so:part_ofop some obo:SO_0000153c |
| URI | http://purl.obolibrary.org/obo/SO_0001000 |
|---|---|
| Super-classes |
obo:SO_0000650c |
| URI | http://purl.obolibrary.org/obo/SO_0001001 |
|---|---|
| Super-classes |
obo:SO_0000651c |
| URI | http://purl.obolibrary.org/obo/SO_0001002 |
|---|---|
| Super-classes |
obo:SO_0000651c |
| URI | http://purl.obolibrary.org/obo/SO_0001003 |
|---|---|
| Description |
Requested by Hadi Quesneville January 2007. |
| Super-classes |
obo:SO_0000286c |
| URI | http://purl.obolibrary.org/obo/SO_0001004 |
|---|---|
| Super-classes |
obo:SO_0000905c |
| URI | http://purl.obolibrary.org/obo/SO_0001005 |
|---|---|
| Super-classes |
obo:SO_0001410c |
| Restrictions |
so:has_qualityop some obo:SO_0001004c |
| URI | http://purl.obolibrary.org/obo/SO_0001006 |
|---|---|
| Super-classes |
obo:SO_0000113c |
| URI | http://purl.obolibrary.org/obo/SO_0001007 |
|---|---|
| Description |
This is not cryptic in the same sense as a cryptic gene or cryptic splice site. |
| Super-classes |
obo:SO_0000772c |
| URI | http://purl.obolibrary.org/obo/SO_0001008 |
|---|---|
| Super-classes |
obo:SO_0000313c |
| URI | http://purl.obolibrary.org/obo/SO_0001009 |
|---|---|
| Super-classes |
obo:SO_0000442c |
| URI | http://purl.obolibrary.org/obo/SO_0001010 |
|---|---|
| Super-classes |
obo:SO_0000142c |
| URI | http://purl.obolibrary.org/obo/SO_0001011 |
|---|---|
| Super-classes |
obo:SO_0001247c |
| Restrictions |
so:has_qualityop some obo:SO_0001184c |
| URI | http://purl.obolibrary.org/obo/SO_0001012 |
|---|---|
| Description |
Added by request from Colin Batchelor. |
| Super-classes |
obo:SO_0000696c |
| Restrictions |
so:has_qualityop some obo:SO_0001185c |
| URI | http://purl.obolibrary.org/obo/SO_0001013 |
|---|---|
| Super-classes |
obo:SO_0002007c |
| URI | http://purl.obolibrary.org/obo/SO_0001014 |
|---|---|
| Description |
Requested by Colin Batchelor, Feb 2007. |
| Super-classes |
obo:SO_0000835c |
| Restrictions |
so:part_ofop some obo:SO_0000188c |
| Sub-classes |
obo:SO_0001996c obo:SO_0001034c obo:SO_0001016c obo:SO_0001994c |
| URI | http://purl.obolibrary.org/obo/SO_0001015 |
|---|---|
| Super-classes |
obo:SO_0000028c |
| URI | http://purl.obolibrary.org/obo/SO_0001016 |
|---|---|
| Super-classes |
obo:SO_0001014c |
| Restrictions |
so:part_ofop some obo:SO_0000587c |
| URI | http://purl.obolibrary.org/obo/SO_0001017 |
|---|---|
| Description |
Added in March 2007 in after meeting with PharmGKB. Although this term is in common usage, it is better to annotate with the most specific term possible, such as synonymous codon, intron variant etc. |
| Super-classes |
obo:SO_0001878c |
| URI | http://purl.obolibrary.org/obo/SO_0001018 |
|---|---|
| Description |
Requested by Trish Whetzel. |
| Super-classes |
obo:SO_0000409c |
| URI | http://purl.obolibrary.org/obo/SO_0001019 |
|---|---|
| Super-classes |
obo:SO_0000248c |
| Sub-classes |
obo:SO_0002210c obo:SO_0001743c obo:SO_0001742c |
| URI | http://purl.obolibrary.org/obo/SO_0001020 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_0001021 |
|---|---|
| Super-classes |
obo:SO_0000699c |
| Restrictions |
so:part_ofop some obo:SO_0000340c |
| Sub-classes |
obo:SO_0001413c obo:SO_0001874c obo:SO_0001022c obo:SO_0001873c obo:SO_0001414c obo:SO_0001415c |
| URI | http://purl.obolibrary.org/obo/SO_0001022 |
|---|---|
| Super-classes |
obo:SO_0001021c |
| URI | http://purl.obolibrary.org/obo/SO_0001023 |
|---|---|
| Super-classes |
obo:SO_0001507c |
| Restrictions |
so:variant_ofop some obo:SO_0000704c |
| Sub-classes |
obo:SO_0001025c |
| URI | http://purl.obolibrary.org/obo/SO_0001024 |
|---|---|
| Super-classes |
obo:SO_0001507c |
| Restrictions |
so:variant_ofop some obo:SO_0000355c |
| URI | http://purl.obolibrary.org/obo/SO_0001025 |
|---|---|
| Super-classes |
obo:SO_0001023c |
| URI | http://purl.obolibrary.org/obo/SO_0001026 |
|---|---|
| Super-classes |
obo:SO_0001260c |
| Restrictions |
so:has_partop some obo:SO_0001235c |
| Sub-classes |
obo:SO_0000741c obo:SO_0001506c obo:SO_0001505c |
| URI | http://purl.obolibrary.org/obo/SO_0001027 |
|---|---|
| Super-classes |
obo:SO_0001507c |
| Restrictions |
so:variant_ofop some obo:SO_0001026c |
| URI | http://purl.obolibrary.org/obo/SO_0001028 |
|---|---|
| Super-classes |
obo:SO_0001507c |
| URI | http://purl.obolibrary.org/obo/SO_0001029 |
|---|---|
| Super-classes |
obo:SO_0000733c |
| Sub-classes |
obo:SO_0001030c obo:SO_0001031c |
| URI | http://purl.obolibrary.org/obo/SO_0001030 |
|---|---|
| Super-classes |
obo:SO_0001029c |
| URI | http://purl.obolibrary.org/obo/SO_0001031 |
|---|---|
| Super-classes |
obo:SO_0001029c |
| URI | http://purl.obolibrary.org/obo/SO_0001032 |
|---|---|
| Description |
This terms is used by MO. |
| Super-classes |
obo:SO_0000737c |
| Restrictions |
so:has_qualityop some obo:SO_0000352c |
| URI | http://purl.obolibrary.org/obo/SO_0001033 |
|---|---|
| Description |
This term is used by MO. |
| Super-classes |
obo:SO_0000745c |
| Restrictions |
so:has_qualityop some obo:SO_0000352c |
| URI | http://purl.obolibrary.org/obo/SO_0001034 |
|---|---|
| Description |
Ruby et al. Nature 448:83 describe a new class of miRNAs that are derived from de-branched introns. |
| Super-classes |
obo:SO_0001014c |
| Restrictions |
so:has_partop some obo:SO_0001244c |
| URI | http://purl.obolibrary.org/obo/SO_0001035 |
|---|---|
| Super-classes |
obo:SO_0000370c |
| URI | http://purl.obolibrary.org/obo/SO_0001036 |
|---|---|
| Super-classes |
obo:SO_0000253c |
| Restrictions |
so:derives_fromop some obo:SO_0000212c |
| URI | http://purl.obolibrary.org/obo/SO_0001037 |
|---|---|
| Super-classes |
obo:SO_0001411c |
| Restrictions |
so:has_qualityop some obo:SO_0001234c |
| Sub-classes |
obo:SO_0001038c obo:SO_0001039c obo:SO_0000666c |
| URI | http://purl.obolibrary.org/obo/SO_0001038 |
|---|---|
| Super-classes |
obo:SO_0001037c |
| Sub-classes |
obo:SO_0001041c obo:SO_0000797c obo:SO_0001476c |
| URI | http://purl.obolibrary.org/obo/SO_0001039 |
|---|---|
| Super-classes |
obo:SO_0001037c |
| Sub-classes |
obo:SO_0001045c obo:SO_0000113c obo:SO_0001040c obo:SO_0000101c obo:SO_0000365c obo:SO_0000772c |
| URI | http://purl.obolibrary.org/obo/SO_0001040 |
|---|---|
| Super-classes |
obo:SO_0001039c |
| Restrictions |
so:derives_fromop some obo:SO_0000155c |
| URI | http://purl.obolibrary.org/obo/SO_0001041 |
|---|---|
| Description |
The definitions of the children of this term were revised Decemeber 2007 after discussion on song-devel. The resulting definitions are slightly unweildy but hopefully more logically correct. |
| Super-classes |
obo:SO_0001038c obo:SO_0001235c |
| Sub-classes |
obo:SO_0001198c obo:SO_0001042c obo:SO_0001199c obo:SO_0001169c |
| URI | http://purl.obolibrary.org/obo/SO_0001042 |
|---|---|
| Super-classes |
obo:SO_0001041c |
| URI | http://purl.obolibrary.org/obo/SO_0001043 |
|---|---|
| Super-classes |
obo:SO_0000946c |
| Restrictions |
so:part_ofop some obo:SO_0000371c |
| URI | http://purl.obolibrary.org/obo/SO_0001044 |
|---|---|
| Description |
Definition change requested by Val, 3172757. |
| Super-classes |
obo:SO_0001760c |
| URI | http://purl.obolibrary.org/obo/SO_0001045 |
|---|---|
| Super-classes |
obo:SO_0001039c |
| URI | http://purl.obolibrary.org/obo/SO_0001046 |
|---|---|
| Super-classes |
obo:SO_0001048c |
| Restrictions |
so:part_ofop some obo:SO_0000948c |
| URI | http://purl.obolibrary.org/obo/SO_0001047 |
|---|---|
| Super-classes |
obo:SO_0001048c |
| Restrictions |
so:part_ofop some obo:SO_0000948c |
| URI | http://purl.obolibrary.org/obo/SO_0001048 |
|---|---|
| Description |
A term created to allow the parts of an inversion site have an is_a path back to the root. |
| Super-classes |
obo:SO_0000342c |
| Sub-classes |
obo:SO_0001047c obo:SO_0001046c |
| URI | http://purl.obolibrary.org/obo/SO_0001049 |
|---|---|
| Super-classes |
obo:SO_0000772c |
| URI | http://purl.obolibrary.org/obo/SO_0001050 |
|---|---|
| Description |
Requested by Chris Smith, and others at Flybase to help annotate nested repeats. |
| Super-classes |
obo:SO_0000840c |
| Restrictions |
so:part_ofop some obo:SO_0001649c |
| URI | http://purl.obolibrary.org/obo/SO_0001054 |
|---|---|
| Super-classes |
obo:SO_0000840c |
| Restrictions |
so:part_ofop some obo:SO_0001648c |
| URI | http://purl.obolibrary.org/obo/SO_0001055 |
|---|---|
| Description |
Previous parent term transcription_regulatory_region (SO:0001067) has been merged with this term on 11 Feb 2021 as part of the GREEKC consortium. See GitHub Issue #527. |
| Super-classes |
obo:SO_0005836c |
| Sub-classes |
obo:SO_0001492c obo:SO_0002297c obo:SO_0001056c obo:SO_0000727c obo:SO_0000551c obo:SO_0000141c obo:SO_0001952c obo:SO_0000235c obo:SO_0000167c obo:SO_0002205c obo:SO_0000057c obo:SO_0001427c obo:SO_0002047c obo:SO_0001058c obo:SO_0002296c |
| URI | http://purl.obolibrary.org/obo/SO_0001056 |
|---|---|
| Description |
Moved from transcription_regulatory_region (SO:0001679) to transcriptional_cis_regulatory_region (SO:0001055) by Dave Sant on Feb 11, 2021 when transcription_regulatory_region was merged into transcriptional_cis_regulatory_region to be consistent with GO and reduce redundancy as part of the GREEKC consortium. See GitHub Issue #527. |
| Super-classes |
obo:SO_0001055c |
| Sub-classes |
obo:SO_0000344c |
| URI | http://purl.obolibrary.org/obo/SO_0001058 |
|---|---|
| Description |
Obsoleted Jan 21, 2021 by Dave Sant. GREEKC consortium individuals pointed out that this did not fit with the other child terms of transcriptional_cis_regulatory_region (SO:0001055), which are currently promoter, CRM and promoter flanking region. No comments about when this term was created exist, no references are listed. GREEKC members assume that this was previously under enhansosome (SO:0001057), which was probably created along with this term but has since been obsoleted. This term can be resurrected as non-obsolete if we can find a reference publication and/or change the name to a term that is commonly used in the field. |
| Super-classes |
obo:SO_0001055c |
| URI | http://purl.obolibrary.org/obo/SO_0001059 |
|---|---|
| Description |
Merged with partially characterized change in nucleotide sequence. |
| Super-classes |
obo:SO_0002072c |
| Sub-classes |
obo:SO_1000036c obo:SO_0002217c obo:SO_1000032c obo:SO_0001744c obo:SO_0001785c obo:SO_0000667c obo:SO_0000159c obo:SO_1000002c obo:SO_0000248c |
| URI | http://purl.obolibrary.org/obo/SO_0001060 |
|---|---|
| Sub-classes |
obo:SO_0001536c obo:SO_0001537c |
| URI | http://purl.obolibrary.org/obo/SO_0001061 |
|---|---|
| Description |
Discrete. |
| Super-classes |
obo:SO_0100011c |
| Restrictions |
so:part_ofop some obo:SO_0001062c |
| URI | http://purl.obolibrary.org/obo/SO_0001062 |
|---|---|
| Description |
Range. |
| Super-classes |
obo:SO_0100011c |
| Restrictions |
so:derives_fromop some obo:SO_0002250c |
| URI | http://purl.obolibrary.org/obo/SO_0001063 |
|---|---|
| Description |
Range. |
| Super-classes |
obo:SO_0000839c |
| URI | http://purl.obolibrary.org/obo/SO_0001064 |
|---|---|
| Description |
Hormones, neuropeptides, antimicrobial peptides, are active peptides. They are typically short (<40 amino acids) in length. |
| Super-classes |
obo:SO_0000419c |
| URI | http://purl.obolibrary.org/obo/SO_0001066 |
|---|---|
| Description |
Range. |
| Super-classes |
obo:SO_0000839c |
| URI | http://purl.obolibrary.org/obo/SO_0001067 |
|---|---|
| Description |
Range. |
| Super-classes |
obo:SO_0100021c |
| Sub-classes |
obo:SO_0100017c obo:SO_0100001c |
| URI | http://purl.obolibrary.org/obo/SO_0001068 |
|---|---|
| Description |
Range. |
| Super-classes |
obo:SO_0100021c |
| URI | http://purl.obolibrary.org/obo/SO_0001070 |
|---|---|
| Description |
Range. |
| Super-classes |
obo:SO_0000839c |
| Sub-classes |
obo:SO_0000417c obo:SO_0001071c obo:SO_0001075c obo:SO_0001078c obo:SO_0001079c obo:SO_0001072c obo:SO_0100003c |
| URI | http://purl.obolibrary.org/obo/SO_0001071 |
|---|---|
| Description |
Range. |
| Super-classes |
obo:SO_0001070c |
| URI | http://purl.obolibrary.org/obo/SO_0001072 |
|---|---|
| Description |
Range. |
| Super-classes |
obo:SO_0001070c |
| Restrictions |
so:part_ofop some obo:SO_0001071c |
| Sub-classes |
obo:SO_0001073c obo:SO_0001074c |
| URI | http://purl.obolibrary.org/obo/SO_0001073 |
|---|---|
| Super-classes |
obo:SO_0001072c |
| URI | http://purl.obolibrary.org/obo/SO_0001074 |
|---|---|
| Description |
This could be inside an organelle within the cell. |
| Super-classes |
obo:SO_0001072c |
| URI | http://purl.obolibrary.org/obo/SO_0001075 |
|---|---|
| Super-classes |
obo:SO_0001070c |
| Restrictions |
so:part_ofop some obo:SO_0001071c |
| Sub-classes |
obo:SO_0001076c obo:SO_0001077c |
| URI | http://purl.obolibrary.org/obo/SO_0001076 |
|---|---|
| Super-classes |
obo:SO_0001075c |
| URI | http://purl.obolibrary.org/obo/SO_0001077 |
|---|---|
| Super-classes |
obo:SO_0001075c |
| URI | http://purl.obolibrary.org/obo/SO_0001078 |
|---|---|
| Description |
Biosapien term was secondary_structure. |
| Super-classes |
obo:SO_0001070c |
| Sub-classes |
obo:SO_0001127c obo:SO_0001111c obo:SO_0001108c obo:SO_0100008c obo:SO_0001107c obo:SO_0100012c obo:SO_0100004c obo:SO_0100007c obo:SO_0001106c obo:SO_0100006c obo:SO_0001120c obo:SO_0001123c obo:SO_0001128c obo:SO_0100005c obo:SO_0001126c obo:SO_0001114c |
| URI | http://purl.obolibrary.org/obo/SO_0001079 |
|---|---|
| Super-classes |
obo:SO_0001070c |
| Sub-classes |
obo:SO_0001080c obo:SO_0001081c |
| URI | http://purl.obolibrary.org/obo/SO_0001080 |
|---|---|
| Description |
Range. |
| Super-classes |
obo:SO_0001079c |
| URI | http://purl.obolibrary.org/obo/SO_0001081 |
|---|---|
| Super-classes |
obo:SO_0001079c |
| Restrictions |
so:has_partop some obo:SO_0001128c so:has_partop some obo:SO_0001114c |
| URI | http://purl.obolibrary.org/obo/SO_0001082 |
|---|---|
| Description |
Range. |
| Super-classes |
obo:SO_0000700c |
| Sub-classes |
obo:SO_0001083c obo:SO_0001084c obo:SO_0001086c obo:SO_0001085c |
| URI | http://purl.obolibrary.org/obo/SO_0001083 |
|---|---|
| Super-classes |
obo:SO_0001082c |
| URI | http://purl.obolibrary.org/obo/SO_0001084 |
|---|---|
| Description |
Discrete. |
| Super-classes |
obo:SO_0001082c |
| URI | http://purl.obolibrary.org/obo/SO_0001085 |
|---|---|
| Description |
Discrete. |
| Super-classes |
obo:SO_0001082c |
| Sub-classes |
obo:SO_0001462c |
| URI | http://purl.obolibrary.org/obo/SO_0001086 |
|---|---|
| Super-classes |
obo:SO_0001082c |
| URI | http://purl.obolibrary.org/obo/SO_0001088 |
|---|---|
| Description |
2 discreet & joined. |
| URI | http://purl.obolibrary.org/obo/SO_0001089 |
|---|---|
| Description |
Discrete. |
| Super-classes |
obo:SO_0100001c |
| Sub-classes |
obo:SO_0001811c obo:SO_0001700c |
| URI | http://purl.obolibrary.org/obo/SO_0001091 |
|---|---|
| Description |
Discrete. |
| URI | http://purl.obolibrary.org/obo/SO_0001092 |
|---|---|
| Description |
Residue is part of a binding site for a metal ion. |
| Super-classes |
obo:SO_0001656c obo:SO_0100002c |
| Sub-classes |
obo:SO_0001103c obo:SO_0001101c obo:SO_0001098c obo:SO_0001097c obo:SO_0001095c obo:SO_0001099c obo:SO_0001100c obo:SO_0001094c obo:SO_0001096c obo:SO_0001102c |
| URI | http://purl.obolibrary.org/obo/SO_0001093 |
|---|---|
| Super-classes |
obo:SO_0000410c obo:SO_0100002c |
| Sub-classes |
obo:SO_0001804c obo:SO_0001810c obo:SO_0002235c |
| URI | http://purl.obolibrary.org/obo/SO_0001094 |
|---|---|
| Description |
Residue involved in contact with calcium. |
| Super-classes |
obo:SO_0001092c |
| URI | http://purl.obolibrary.org/obo/SO_0001095 |
|---|---|
| Super-classes |
obo:SO_0001092c |
| URI | http://purl.obolibrary.org/obo/SO_0001096 |
|---|---|
| Super-classes |
obo:SO_0001092c |
| URI | http://purl.obolibrary.org/obo/SO_0001097 |
|---|---|
| Super-classes |
obo:SO_0001092c |
| URI | http://purl.obolibrary.org/obo/SO_0001098 |
|---|---|
| Super-classes |
obo:SO_0001092c |
| URI | http://purl.obolibrary.org/obo/SO_0001099 |
|---|---|
| Super-classes |
obo:SO_0001092c |
| URI | http://purl.obolibrary.org/obo/SO_0001100 |
|---|---|
| Super-classes |
obo:SO_0001092c |
| URI | http://purl.obolibrary.org/obo/SO_0001101 |
|---|---|
| Super-classes |
obo:SO_0001092c |
| URI | http://purl.obolibrary.org/obo/SO_0001102 |
|---|---|
| Super-classes |
obo:SO_0001092c |
| URI | http://purl.obolibrary.org/obo/SO_0001103 |
|---|---|
| Super-classes |
obo:SO_0001092c |
| URI | http://purl.obolibrary.org/obo/SO_0001104 |
|---|---|
| Description |
Discrete. |
| Super-classes |
obo:SO_0001237c |
| Restrictions |
so:part_ofop some obo:SO_0100019c |
| URI | http://purl.obolibrary.org/obo/SO_0001105 |
|---|---|
| Super-classes |
obo:SO_0100002c obo:SO_0001657c |
| URI | http://purl.obolibrary.org/obo/SO_0001106 |
|---|---|
| Super-classes |
obo:SO_0001078c |
| URI | http://purl.obolibrary.org/obo/SO_0001107 |
|---|---|
| Super-classes |
obo:SO_0001078c |
| URI | http://purl.obolibrary.org/obo/SO_0001108 |
|---|---|
| Super-classes |
obo:SO_0001078c |
| Sub-classes |
obo:SO_0001109c obo:SO_0001110c |
| URI | http://purl.obolibrary.org/obo/SO_0001109 |
|---|---|
| Super-classes |
obo:SO_0001108c |
| URI | http://purl.obolibrary.org/obo/SO_0001110 |
|---|---|
| Super-classes |
obo:SO_0001108c |
| URI | http://purl.obolibrary.org/obo/SO_0001111 |
|---|---|
| Description |
Range. |
| Super-classes |
obo:SO_0001078c |
| Sub-classes |
obo:SO_0001112c obo:SO_0001113c |
| URI | http://purl.obolibrary.org/obo/SO_0001112 |
|---|---|
| Description |
Range. |
| Super-classes |
obo:SO_0001111c |
| URI | http://purl.obolibrary.org/obo/SO_0001113 |
|---|---|
| Description |
Range. |
| Super-classes |
obo:SO_0001111c |
| URI | http://purl.obolibrary.org/obo/SO_0001114 |
|---|---|
| Description |
Range. |
| Super-classes |
obo:SO_0001078c |
| Sub-classes |
obo:SO_0001115c obo:SO_0001116c obo:SO_0001812c |
| URI | http://purl.obolibrary.org/obo/SO_0001115 |
|---|---|
| Super-classes |
obo:SO_0001114c |
| URI | http://purl.obolibrary.org/obo/SO_0001116 |
|---|---|
| Super-classes |
obo:SO_0001114c |
| Sub-classes |
obo:SO_0001118c obo:SO_0001117c obo:SO_0001119c |
| URI | http://purl.obolibrary.org/obo/SO_0001117 |
|---|---|
| Description |
Range. |
| Super-classes |
obo:SO_0001116c |
| URI | http://purl.obolibrary.org/obo/SO_0001118 |
|---|---|
| Description |
Range. |
| Super-classes |
obo:SO_0001116c |
| URI | http://purl.obolibrary.org/obo/SO_0001119 |
|---|---|
| Description |
Range. |
| Super-classes |
obo:SO_0001116c |
| URI | http://purl.obolibrary.org/obo/SO_0001120 |
|---|---|
| Super-classes |
obo:SO_0001078c |
| Sub-classes |
obo:SO_0001122c obo:SO_0001121c |
| URI | http://purl.obolibrary.org/obo/SO_0001121 |
|---|---|
| Super-classes |
obo:SO_0001120c |
| URI | http://purl.obolibrary.org/obo/SO_0001122 |
|---|---|
| Super-classes |
obo:SO_0001120c |
| URI | http://purl.obolibrary.org/obo/SO_0001123 |
|---|---|
| Super-classes |
obo:SO_0001078c |
| Sub-classes |
obo:SO_0001125c obo:SO_0001124c |
| URI | http://purl.obolibrary.org/obo/SO_0001124 |
|---|---|
| Super-classes |
obo:SO_0001123c |
| URI | http://purl.obolibrary.org/obo/SO_0001125 |
|---|---|
| Super-classes |
obo:SO_0001123c |
| URI | http://purl.obolibrary.org/obo/SO_0001126 |
|---|---|
| Super-classes |
obo:SO_0001078c |
| URI | http://purl.obolibrary.org/obo/SO_0001127 |
|---|---|
| Super-classes |
obo:SO_0001078c |
| URI | http://purl.obolibrary.org/obo/SO_0001128 |
|---|---|
| Description |
Range. |
| Super-classes |
obo:SO_0001078c |
| Sub-classes |
obo:SO_0001133c obo:SO_0001141c obo:SO_0000912c obo:SO_0001138c |
| URI | http://purl.obolibrary.org/obo/SO_0001129 |
|---|---|
| Super-classes |
obo:SO_0000912c |
| URI | http://purl.obolibrary.org/obo/SO_0001130 |
|---|---|
| Super-classes |
obo:SO_0000912c |
| URI | http://purl.obolibrary.org/obo/SO_0001131 |
|---|---|
| Super-classes |
obo:SO_0000912c |
| URI | http://purl.obolibrary.org/obo/SO_0001132 |
|---|---|
| Super-classes |
obo:SO_0000912c |
| URI | http://purl.obolibrary.org/obo/SO_0001133 |
|---|---|
| Super-classes |
obo:SO_0001128c |
| Sub-classes |
obo:SO_0001134c obo:SO_0001155c obo:SO_0001137c obo:SO_0001150c obo:SO_0001135c obo:SO_0001136c |
| URI | http://purl.obolibrary.org/obo/SO_0001134 |
|---|---|
| Super-classes |
obo:SO_0001133c |
| URI | http://purl.obolibrary.org/obo/SO_0001135 |
|---|---|
| Super-classes |
obo:SO_0001133c |
| URI | http://purl.obolibrary.org/obo/SO_0001136 |
|---|---|
| Super-classes |
obo:SO_0001133c |
| URI | http://purl.obolibrary.org/obo/SO_0001137 |
|---|---|
| Super-classes |
obo:SO_0001133c |
| URI | http://purl.obolibrary.org/obo/SO_0001138 |
|---|---|
| Super-classes |
obo:SO_0001128c |
| Sub-classes |
obo:SO_0001140c obo:SO_0001139c |
| URI | http://purl.obolibrary.org/obo/SO_0001139 |
|---|---|
| Super-classes |
obo:SO_0001138c |
| URI | http://purl.obolibrary.org/obo/SO_0001140 |
|---|---|
| Super-classes |
obo:SO_0001138c |
| URI | http://purl.obolibrary.org/obo/SO_0001141 |
|---|---|
| Super-classes |
obo:SO_0001128c |
| Sub-classes |
obo:SO_0001143c obo:SO_0001142c obo:SO_0001144c obo:SO_0001145c |
| URI | http://purl.obolibrary.org/obo/SO_0001142 |
|---|---|
| Super-classes |
obo:SO_0001141c |
| URI | http://purl.obolibrary.org/obo/SO_0001143 |
|---|---|
| Super-classes |
obo:SO_0001141c |
| URI | http://purl.obolibrary.org/obo/SO_0001144 |
|---|---|
| Super-classes |
obo:SO_0001141c |
| URI | http://purl.obolibrary.org/obo/SO_0001145 |
|---|---|
| Super-classes |
obo:SO_0001141c |
| URI | http://purl.obolibrary.org/obo/SO_0001146 |
|---|---|
| Description |
For example, was a substitution natural or mutated as part of an experiment? This term is added to merge the biosapiens term sequence_variations. |
| Super-classes |
obo:SO_0000839c |
| Sub-classes |
obo:SO_0001148c obo:SO_0001147c obo:SO_0001149c |
| URI | http://purl.obolibrary.org/obo/SO_0001147 |
|---|---|
| Description |
Discrete. |
| Super-classes |
obo:SO_0001146c |
| URI | http://purl.obolibrary.org/obo/SO_0001148 |
|---|---|
| Description |
Discrete. |
| Super-classes |
obo:SO_0001146c |
| URI | http://purl.obolibrary.org/obo/SO_0001149 |
|---|---|
| Description |
Discrete. |
| Super-classes |
obo:SO_0001146c |
| URI | http://purl.obolibrary.org/obo/SO_0001150 |
|---|---|
| Super-classes |
obo:SO_0001133c |
| Sub-classes |
obo:SO_0001151c obo:SO_0001154c |
| URI | http://purl.obolibrary.org/obo/SO_0001151 |
|---|---|
| Super-classes |
obo:SO_0001150c |
| Sub-classes |
obo:SO_0001153c obo:SO_0001152c |
| URI | http://purl.obolibrary.org/obo/SO_0001152 |
|---|---|
| Super-classes |
obo:SO_0001151c |
| URI | http://purl.obolibrary.org/obo/SO_0001153 |
|---|---|
| Super-classes |
obo:SO_0001151c |
| URI | http://purl.obolibrary.org/obo/SO_0001154 |
|---|---|
| Super-classes |
obo:SO_0001150c |
| URI | http://purl.obolibrary.org/obo/SO_0001155 |
|---|---|
| Super-classes |
obo:SO_0001133c |
| URI | http://purl.obolibrary.org/obo/SO_0001156 |
|---|---|
| Description |
This consensus sequence was identified computationally using the MEME algorithm within core promoter sequences from -60 to +40, with an E value of 1.7e-183. Tends to co-occur with Motif 7. Tends to not occur with DPE motif (SO:0000015) or motif 10. |
| Super-classes |
obo:SO_0000713c |
| Restrictions |
so:part_ofop some obo:SO_0000170c |
| URI | http://purl.obolibrary.org/obo/SO_0001157 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| URI | http://purl.obolibrary.org/obo/SO_0001158 |
|---|---|
| Super-classes |
obo:SO_0000713c |
| Restrictions |
so:part_ofop some obo:SO_0000170c |
| URI | http://purl.obolibrary.org/obo/SO_0001159 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| Restrictions |
so:part_ofop some obo:SO_0000170c |
| URI | http://purl.obolibrary.org/obo/SO_0001160 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| Restrictions |
so:part_ofop some obo:SO_0000170c |
| URI | http://purl.obolibrary.org/obo/SO_0001161 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| Restrictions |
so:part_ofop some obo:SO_0000170c |
| URI | http://purl.obolibrary.org/obo/SO_0001162 |
|---|---|
| Super-classes |
obo:SO_0001660c |
| Restrictions |
so:part_ofop some obo:SO_0001669c |
| URI | http://purl.obolibrary.org/obo/SO_0001163 |
|---|---|
| Super-classes |
obo:SO_0000713c |
| Restrictions |
so:part_ofop some obo:SO_0000170c |
| URI | http://purl.obolibrary.org/obo/SO_0001164 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| Restrictions |
so:part_ofop some obo:SO_0000170c |
| URI | http://purl.obolibrary.org/obo/SO_0001165 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| Restrictions |
so:part_ofop some obo:SO_0000170c |
| URI | http://purl.obolibrary.org/obo/SO_0001166 |
|---|---|
| Super-classes |
obo:SO_0000713c |
| Restrictions |
so:part_ofop some obo:SO_0000170c |
| URI | http://purl.obolibrary.org/obo/SO_0001167 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| Restrictions |
so:part_ofop some obo:SO_0000170c |
| URI | http://purl.obolibrary.org/obo/SO_0001168 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| Restrictions |
so:part_ofop some obo:SO_0000170c |
| URI | http://purl.obolibrary.org/obo/SO_0001169 |
|---|---|
| Super-classes |
obo:SO_0001041c |
| URI | http://purl.obolibrary.org/obo/SO_0001170 |
|---|---|
| Super-classes |
obo:SO_0000208c |
| URI | http://purl.obolibrary.org/obo/SO_0001171 |
|---|---|
| Super-classes |
obo:SO_0000651c |
| URI | http://purl.obolibrary.org/obo/SO_0001172 |
|---|---|
| Super-classes |
obo:SO_0000834c |
| Restrictions |
so:part_ofop some obo:SO_0000253c |
| Sub-classes |
obo:SO_0001177c obo:SO_0001174c obo:SO_0001173c obo:SO_0001176c obo:SO_0001175c |
| URI | http://purl.obolibrary.org/obo/SO_0001173 |
|---|---|
| Super-classes |
obo:SO_0001172c |
| URI | http://purl.obolibrary.org/obo/SO_0001174 |
|---|---|
| Super-classes |
obo:SO_0001172c |
| Restrictions |
so:part_ofop some obo:SO_0001173c |
| URI | http://purl.obolibrary.org/obo/SO_0001175 |
|---|---|
| Super-classes |
obo:SO_0001172c |
| URI | http://purl.obolibrary.org/obo/SO_0001176 |
|---|---|
| Super-classes |
obo:SO_0001172c |
| URI | http://purl.obolibrary.org/obo/SO_0001177 |
|---|---|
| Super-classes |
obo:SO_0001172c |
| URI | http://purl.obolibrary.org/obo/SO_0001178 |
|---|---|
| Super-classes |
obo:SO_0000210c |
| URI | http://purl.obolibrary.org/obo/SO_0001179 |
|---|---|
| Description |
The definition is most of the old definition for snoRNA (SO:0000275). |
| Super-classes |
obo:SO_0000593c |
| URI | http://purl.obolibrary.org/obo/SO_0001180 |
|---|---|
| Super-classes |
obo:SO_0000837c |
| Restrictions |
so:part_ofop some obo:SO_0000205c |
| URI | http://purl.obolibrary.org/obo/SO_0001181 |
|---|---|
| Description |
Not to be confused with BRE_motif (SO:0000016), which binds transcription factor II B. |
| Super-classes |
obo:SO_0000837c |
| Restrictions |
so:part_ofop some obo:SO_0000205c |
| URI | http://purl.obolibrary.org/obo/SO_0001182 |
|---|---|
| Super-classes |
obo:SO_0000837c |
| Restrictions |
so:part_ofop some obo:SO_0000203c |
| URI | http://purl.obolibrary.org/obo/SO_0001183 |
|---|---|
| Description |
Do not use this for feature annotation. Use morpholino_oligo (SO:0000034) instead. |
| Super-classes |
obo:SO_0000348c |
| URI | http://purl.obolibrary.org/obo/SO_0001184 |
|---|---|
| Description |
Do not use this term for feature annotation. Use PNA_oligo (SO:0001011) instead. |
| Super-classes |
obo:SO_0000348c |
| URI | http://purl.obolibrary.org/obo/SO_0001185 |
|---|---|
| Description |
Do not use this for feature annotation. Use enzymatic_RNA (SO:0000372) instead. |
| Super-classes |
obo:SO_0000733c |
| Sub-classes |
obo:SO_0001186c |
| URI | http://purl.obolibrary.org/obo/SO_0001186 |
|---|---|
| Description |
Do not use this for feature annotation. Use ribozyme (SO:0000374) instead. |
| Super-classes |
obo:SO_0001185c |
| URI | http://purl.obolibrary.org/obo/SO_0001187 |
|---|---|
| Description |
Has RNA pseudouridylation guide activity (GO:0030558). |
| Super-classes |
obo:SO_0000594c |
| URI | http://purl.obolibrary.org/obo/SO_0001188 |
|---|---|
| Description |
Do not use this term for feature annotation. Use LNA_oligo (SO:0001189) instead. |
| Super-classes |
obo:SO_0000348c |
| URI | http://purl.obolibrary.org/obo/SO_0001189 |
|---|---|
| Super-classes |
obo:SO_0001247c |
| Restrictions |
so:has_qualityop some obo:SO_0001188c |
| URI | http://purl.obolibrary.org/obo/SO_0001190 |
|---|---|
| Description |
Do not use this term for feature annotation. Use TNA_oligo (SO:0001191) instead. |
| Super-classes |
obo:SO_0000348c |
| URI | http://purl.obolibrary.org/obo/SO_0001191 |
|---|---|
| Super-classes |
obo:SO_0001247c |
| Restrictions |
so:has_qualityop some obo:SO_0001190c |
| URI | http://purl.obolibrary.org/obo/SO_0001192 |
|---|---|
| Description |
Do not use this term for feature annotation. Use GNA_oligo (SO:0001192) instead. |
| Super-classes |
obo:SO_0000348c |
| Sub-classes |
obo:SO_0001196c obo:SO_0001194c |
| URI | http://purl.obolibrary.org/obo/SO_0001193 |
|---|---|
| Super-classes |
obo:SO_0001247c |
| Restrictions |
so:has_qualityop some obo:SO_0001192c |
| Sub-classes |
obo:SO_0001197c obo:SO_0001195c |
| URI | http://purl.obolibrary.org/obo/SO_0001194 |
|---|---|
| Description |
Do not use this term for feature annotation. Use R_GNA_oligo (SO:0001195) instead. |
| Super-classes |
obo:SO_0001192c |
| URI | http://purl.obolibrary.org/obo/SO_0001195 |
|---|---|
| Super-classes |
obo:SO_0001193c |
| Restrictions |
so:has_qualityop some obo:SO_0001194c |
| URI | http://purl.obolibrary.org/obo/SO_0001196 |
|---|---|
| Description |
Do not use this term for feature annotation. Use S_GNA_oligo (SO:0001197) instead. |
| Super-classes |
obo:SO_0001192c |
| URI | http://purl.obolibrary.org/obo/SO_0001197 |
|---|---|
| Super-classes |
obo:SO_0001193c |
| Restrictions |
so:has_qualityop some obo:SO_0001196c |
| URI | http://purl.obolibrary.org/obo/SO_0001198 |
|---|---|
| Super-classes |
obo:SO_0001041c |
| URI | http://purl.obolibrary.org/obo/SO_0001199 |
|---|---|
| Super-classes |
obo:SO_0001041c |
| Sub-classes |
obo:SO_0001202c obo:SO_0001200c obo:SO_0001201c |
| URI | http://purl.obolibrary.org/obo/SO_0001200 |
|---|---|
| Super-classes |
obo:SO_0001199c |
| URI | http://purl.obolibrary.org/obo/SO_0001201 |
|---|---|
| Super-classes |
obo:SO_0001199c |
| URI | http://purl.obolibrary.org/obo/SO_0001202 |
|---|---|
| Super-classes |
obo:SO_0001199c |
| URI | http://purl.obolibrary.org/obo/SO_0001203 |
|---|---|
| Description |
Term merged with promoter SO:0000167 in August 2020 as part of GREEKC initiative. See GitHub Issue 492 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/492) |
| URI | http://purl.obolibrary.org/obo/SO_0001204 |
|---|---|
| Description |
former parent RNA_polymerase_promoter SO:0001203 was merged with promoter SO:0000167 in Aug 2020 as part of GREEKC. |
| Super-classes |
obo:SO_0002311c |
| Sub-classes |
obo:SO_0001207c obo:SO_0001205c obo:SO_0001206c |
| URI | http://purl.obolibrary.org/obo/SO_0001205 |
|---|---|
| Super-classes |
obo:SO_0001204c |
| URI | http://purl.obolibrary.org/obo/SO_0001206 |
|---|---|
| Super-classes |
obo:SO_0001204c |
| URI | http://purl.obolibrary.org/obo/SO_0001207 |
|---|---|
| Super-classes |
obo:SO_0001204c |
| URI | http://purl.obolibrary.org/obo/SO_0001208 |
|---|---|
| Super-classes |
obo:SO_0000345c |
| URI | http://purl.obolibrary.org/obo/SO_0001209 |
|---|---|
| Super-classes |
obo:SO_0000345c |
| URI | http://purl.obolibrary.org/obo/SO_0001210 |
|---|---|
| Description |
Added synonym 'ribosomal_slippage' on Feb 1, 2021, a term in INSDC and GenBank. See GitHub Issue #522. |
| Super-classes |
obo:SO_0000836c |
| Sub-classes |
obo:SO_0001211c obo:SO_0001212c obo:SO_0002330c obo:SO_0002329c |
| URI | http://purl.obolibrary.org/obo/SO_0001211 |
|---|---|
| Super-classes |
obo:SO_0001210c |
| URI | http://purl.obolibrary.org/obo/SO_0001212 |
|---|---|
| Super-classes |
obo:SO_0001210c |
| URI | http://purl.obolibrary.org/obo/SO_0001213 |
|---|---|
| Description |
GO:0000374. |
| Super-classes |
obo:SO_0000588c |
| URI | http://purl.obolibrary.org/obo/SO_0001214 |
|---|---|
| Description |
An exon either containing but not starting with a start codon or containing but not ending with a stop codon will be partially coding and partially non coding. |
| Super-classes |
obo:SO_0000852c |
| Sub-classes |
obo:SO_0000486c obo:SO_0000484c |
| URI | http://purl.obolibrary.org/obo/SO_0001215 |
|---|---|
| Description |
An exon containing either a start or stop codon will be partially coding and partially non coding. |
| Super-classes |
obo:SO_0000852c |
| Sub-classes |
obo:SO_0000197c obo:SO_0000196c |
| URI | http://purl.obolibrary.org/obo/SO_0001216 |
|---|---|
| Super-classes |
obo:SO_0000188c |
| Sub-classes |
obo:SO_1001272c obo:SO_1001271c |
| URI | http://purl.obolibrary.org/obo/SO_0001217 |
|---|---|
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:has_qualityop some obo:SO_0000010c |
| Sub-classes |
obo:SO_0000455c obo:SO_0000693c obo:SO_0000548c obo:SO_0000451c |
| URI | http://purl.obolibrary.org/obo/SO_0001218 |
|---|---|
| Super-classes |
obo:SO_0000667c |
| Restrictions |
so:has_qualityop some obo:SO_0000781c |
| URI | http://purl.obolibrary.org/obo/SO_0001219 |
|---|---|
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:has_qualityop some obo:SO_0000569c |
| URI | http://purl.obolibrary.org/obo/SO_0001220 |
|---|---|
| Description |
RNA interference is GO:0016246. |
| Super-classes |
obo:SO_0000893c |
| URI | http://purl.obolibrary.org/obo/SO_0001221 |
|---|---|
| Description |
Histone modification is GO:0016570. |
| Super-classes |
obo:SO_0000893c |
| Sub-classes |
obo:SO_0001222c obo:SO_0001223c |
| URI | http://purl.obolibrary.org/obo/SO_0001222 |
|---|---|
| Description |
Histone methylation is GO:0016571. |
| Super-classes |
obo:SO_0001221c |
| URI | http://purl.obolibrary.org/obo/SO_0001223 |
|---|---|
| Description |
Histone deacetylation is GO:0016573. |
| Super-classes |
obo:SO_0001221c |
| URI | http://purl.obolibrary.org/obo/SO_0001224 |
|---|---|
| Super-classes |
obo:SO_0000127c |
| Restrictions |
so:has_qualityop some obo:SO_0001220c |
| URI | http://purl.obolibrary.org/obo/SO_0001225 |
|---|---|
| Super-classes |
obo:SO_0000127c |
| Restrictions |
so:has_qualityop some obo:SO_0001221c |
| Sub-classes |
obo:SO_0001227c obo:SO_0001226c |
| URI | http://purl.obolibrary.org/obo/SO_0001226 |
|---|---|
| Super-classes |
obo:SO_0001225c |
| Restrictions |
so:has_qualityop some obo:SO_0001222c |
| URI | http://purl.obolibrary.org/obo/SO_0001227 |
|---|---|
| Super-classes |
obo:SO_0001225c |
| Restrictions |
so:has_qualityop some obo:SO_0001223c |
| URI | http://purl.obolibrary.org/obo/SO_0001228 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001229 |
|---|---|
| Description |
The free molecule is CHEBI:17802. |
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001230 |
|---|---|
| Description |
The free molecule is CHEBI:17596. |
| Super-classes |
obo:SO_0000250c |
| Sub-classes |
obo:SO_0001274c |
| URI | http://purl.obolibrary.org/obo/SO_0001231 |
|---|---|
| Description |
The free molecule is CHEBI:2274. |
| Super-classes |
obo:SO_0000250c |
| URI | http://purl.obolibrary.org/obo/SO_0001232 |
|---|---|
| Description |
The free molecule is CHEBI:30832. |
| Super-classes |
obo:SO_0000250c |
| URI | http://purl.obolibrary.org/obo/SO_0001233 |
|---|---|
| Super-classes |
obo:SO_0001274c |
| URI | http://purl.obolibrary.org/obo/SO_0001234 |
|---|---|
| Super-classes |
obo:SO_0000733c |
| URI | http://purl.obolibrary.org/obo/SO_0001235 |
|---|---|
| Super-classes |
obo:SO_0001411c |
| Sub-classes |
obo:SO_0000742c obo:SO_0000340c obo:SO_0000155c obo:SO_0000440c obo:SO_0001041c obo:SO_0000980c |
| URI | http://purl.obolibrary.org/obo/SO_0001236 |
|---|---|
| Super-classes |
obo:SO_0001411c |
| Sub-classes |
obo:SO_0000250c obo:SO_0000305c |
| URI | http://purl.obolibrary.org/obo/SO_0001237 |
|---|---|
| Description |
Probably in the future this will cross reference to Chebi. |
| Super-classes |
obo:SO_0001411c |
| Restrictions |
so:part_ofop some obo:SO_0000104c |
| Sub-classes |
obo:SO_0001385c obo:SO_0001456c obo:SO_0001454c obo:SO_0001439c obo:SO_0001443c obo:SO_0001104c obo:SO_0001447c obo:SO_0001436c obo:SO_0001453c obo:SO_0001438c obo:SO_0001455c obo:SO_0001451c obo:SO_0001446c obo:SO_0001450c obo:SO_0001444c obo:SO_0001435c obo:SO_0001437c obo:SO_0001441c obo:SO_0001445c obo:SO_0001449c obo:SO_0001452c obo:SO_0001440c obo:SO_0001448c obo:SO_0001442c |
| URI | http://purl.obolibrary.org/obo/SO_0001238 |
|---|---|
| Super-classes |
obo:SO_0000315c |
| URI | http://purl.obolibrary.org/obo/SO_0001239 |
|---|---|
| Super-classes |
obo:SO_0000315c |
| URI | http://purl.obolibrary.org/obo/SO_0001240 |
|---|---|
| Description |
Merged into promoter (SO:0000167) on 11 Feb 2021 by Dave Sant. GREEKC had asked us to merge these terms to reduce redundancy. See GitHub Issue #528 |
| URI | http://purl.obolibrary.org/obo/SO_0001241 |
|---|---|
| Super-classes |
obo:SO_0000401c |
| URI | http://purl.obolibrary.org/obo/SO_0001243 |
|---|---|
| Super-classes |
obo:SO_0000835c |
| Sub-classes |
obo:SO_0001244c obo:SO_0001245c obo:SO_0001473c obo:SO_0001246c |
| URI | http://purl.obolibrary.org/obo/SO_0001244 |
|---|---|
| Super-classes |
obo:SO_0001243c |
| URI | http://purl.obolibrary.org/obo/SO_0001245 |
|---|---|
| Super-classes |
obo:SO_0001243c |
| Restrictions |
so:part_ofop some obo:SO_0001244c |
| URI | http://purl.obolibrary.org/obo/SO_0001246 |
|---|---|
| Super-classes |
obo:SO_0001243c |
| Restrictions |
so:part_ofop some obo:SO_0001244c |
| URI | http://purl.obolibrary.org/obo/SO_0001247 |
|---|---|
| Super-classes |
obo:SO_0000696c |
| Sub-classes |
obo:SO_0001011c obo:SO_0001193c obo:SO_0001189c obo:SO_0000034c obo:SO_0001191c |
| URI | http://purl.obolibrary.org/obo/SO_0001248 |
|---|---|
| Super-classes |
obo:SO_0001410c |
| Sub-classes |
obo:SO_0000353c obo:SO_0001249c |
| URI | http://purl.obolibrary.org/obo/SO_0001249 |
|---|---|
| Super-classes |
obo:SO_0001248c |
| Sub-classes |
obo:SO_0001252c obo:SO_0001250c obo:SO_0001251c |
| URI | http://purl.obolibrary.org/obo/SO_0001250 |
|---|---|
| Super-classes |
obo:SO_0001249c |
| Restrictions |
so:has_partop some obo:SO_0000412c |
| URI | http://purl.obolibrary.org/obo/SO_0001251 |
|---|---|
| Super-classes |
obo:SO_0001249c |
| Restrictions |
so:has_partop some obo:SO_0000331c |
| URI | http://purl.obolibrary.org/obo/SO_0001252 |
|---|---|
| Super-classes |
obo:SO_0001249c |
| Restrictions |
so:has_partop some obo:SO_0000331c |
| URI | http://purl.obolibrary.org/obo/SO_0001253 |
|---|---|
| Super-classes |
obo:SO_0000143c |
| URI | http://purl.obolibrary.org/obo/SO_0001254 |
|---|---|
| Super-classes |
obo:SO_1000182c |
| Sub-classes |
obo:SO_0001256c obo:SO_0001255c |
| URI | http://purl.obolibrary.org/obo/SO_0001255 |
|---|---|
| Super-classes |
obo:SO_0001254c |
| URI | http://purl.obolibrary.org/obo/SO_0001256 |
|---|---|
| Super-classes |
obo:SO_0001254c |
| URI | http://purl.obolibrary.org/obo/SO_0001257 |
|---|---|
| Super-classes |
obo:SO_0000059c |
| URI | http://purl.obolibrary.org/obo/SO_0001258 |
|---|---|
| Description |
Nature. 1986 Oct 16-22;323(6089):640-3. |
| Super-classes |
obo:SO_0000713c |
| Restrictions |
so:part_ofop some obo:SO_0000170c |
| URI | http://purl.obolibrary.org/obo/SO_0001259 |
|---|---|
| Super-classes |
obo:SO_0000340c |
| Restrictions |
so:has_originop some obo:SO_0000743c |
| URI | http://purl.obolibrary.org/obo/SO_0001260 |
|---|---|
| Sub-classes |
obo:SO_0001507c obo:SO_0001462c obo:SO_0001026c obo:SO_0001501c |
| URI | http://purl.obolibrary.org/obo/SO_0001261 |
|---|---|
| Description |
This feature was requested by Nicole, tracker id 1911479. It is required to gather evidence together for annotation. An example would be overlapping ESTs that support an mRNA. |
| Super-classes |
obo:SO_0000703c |
| Sub-classes |
obo:SO_0001262c |
| URI | http://purl.obolibrary.org/obo/SO_0001262 |
|---|---|
| Super-classes |
obo:SO_0001261c |
| Restrictions |
so:has_partop some obo:SO_0000345c |
| URI | http://purl.obolibrary.org/obo/SO_0001263 |
|---|---|
| Super-classes |
obo:SO_0000704c |
| Sub-classes |
obo:SO_0002341c obo:SO_0001643c obo:SO_0001269c obo:SO_0001637c obo:SO_0001640c obo:SO_0002180c obo:SO_0001264c obo:SO_0001639c obo:SO_0002342c obo:SO_0001266c obo:SO_0002127c |
| URI | http://purl.obolibrary.org/obo/SO_0001264 |
|---|---|
| Super-classes |
obo:SO_0001263c |
| Restrictions |
so:has_qualityop some obo:SO_0000979c |
| URI | http://purl.obolibrary.org/obo/SO_0001265 |
|---|---|
| Description |
Moved from ncRNA_gene to sncRNA_gene 27 April 2021 to be more consistent with the organization of the ncRNA branch of SO. Requested by FlyBase, moved by Dave Sant. See GitHub Issue #514. |
| Super-classes |
obo:SO_0002342c |
| Restrictions |
so:has_qualityop some obo:SO_0000571c so:has_qualityop some obo:SO_0000656c |
| URI | http://purl.obolibrary.org/obo/SO_0001266 |
|---|---|
| Super-classes |
obo:SO_0001263c |
| Restrictions |
so:has_qualityop some obo:SO_0000575c |
| URI | http://purl.obolibrary.org/obo/SO_0001267 |
|---|---|
| Description |
Moved from ncRNA_gene to sncRNA_gene 27 April 2021 to be more consistent with the organization of the ncRNA branch of SO. Requested by FlyBase, moved by Dave Sant. See GitHub Issue #514. |
| Super-classes |
obo:SO_0002342c |
| Restrictions |
so:has_qualityop some obo:SO_0000578c |
| Sub-classes |
obo:SO_0002339c |
| URI | http://purl.obolibrary.org/obo/SO_0001268 |
|---|---|
| Description |
Moved from ncRNA_gene to sncRNA_gene 27 April 2021 to be more consistent with the organization of the ncRNA branch of SO. Requested by FlyBase, moved by Dave Sant. See GitHub Issue #514. |
| Super-classes |
obo:SO_0002342c |
| URI | http://purl.obolibrary.org/obo/SO_0001269 |
|---|---|
| Super-classes |
obo:SO_0001263c |
| Restrictions |
so:has_qualityop some obo:SO_0000642c |
| URI | http://purl.obolibrary.org/obo/SO_0001271 |
|---|---|
| Description |
Moved from ncRNA_gene to sncRNA_gene 27 April 2021 to be more consistent with the organization of the ncRNA branch of SO. Requested by FlyBase, moved by Dave Sant. See GitHub Issue #514. |
| Super-classes |
obo:SO_0002342c |
| Restrictions |
so:has_qualityop some obo:SO_0000659c |
| URI | http://purl.obolibrary.org/obo/SO_0001272 |
|---|---|
| Description |
Moved from ncRNA_gene to sncRNA_gene 27 April 2021 to be more consistent with the organization of the ncRNA branch of SO. Requested by FlyBase, moved by Dave Sant. See GitHub Issue #514. |
| Super-classes |
obo:SO_0002342c |
| Restrictions |
so:has_qualityop some obo:SO_0000663c |
| URI | http://purl.obolibrary.org/obo/SO_0001273 |
|---|---|
| Super-classes |
obo:SO_0000250c |
| Sub-classes |
obo:SO_0001301c obo:SO_0001313c obo:SO_0001307c obo:SO_0001295c obo:SO_0001311c obo:SO_0001297c obo:SO_0001310c obo:SO_0001305c obo:SO_0001315c obo:SO_0001299c obo:SO_0001306c obo:SO_0001308c obo:SO_0001296c obo:SO_0001314c obo:SO_0001300c obo:SO_0001302c obo:SO_0001298c obo:SO_0001309c obo:SO_0001304c obo:SO_0001312c obo:SO_0001303c |
| URI | http://purl.obolibrary.org/obo/SO_0001274 |
|---|---|
| Super-classes |
obo:SO_0001230c |
| Sub-classes |
obo:SO_0001279c obo:SO_0001278c obo:SO_0001233c obo:SO_0001280c |
| URI | http://purl.obolibrary.org/obo/SO_0001275 |
|---|---|
| Super-classes |
obo:SO_0000250c |
| Sub-classes |
obo:SO_0001282c obo:SO_0001287c obo:SO_0001292c obo:SO_0001291c obo:SO_0001284c obo:SO_0001290c obo:SO_0001285c obo:SO_0001286c obo:SO_0001293c obo:SO_0001294c obo:SO_0001288c obo:SO_0001283c obo:SO_0001281c obo:SO_0001289c |
| URI | http://purl.obolibrary.org/obo/SO_0001276 |
|---|---|
| Super-classes |
obo:SO_0000250c |
| Sub-classes |
obo:SO_0001316c obo:SO_0001343c obo:SO_0001339c obo:SO_0001338c obo:SO_0001336c obo:SO_0001329c obo:SO_0001337c obo:SO_0001341c obo:SO_0001324c obo:SO_0001340c obo:SO_0001328c obo:SO_0001334c obo:SO_0001330c obo:SO_0001325c obo:SO_0001327c obo:SO_0001342c obo:SO_0001332c obo:SO_0001331c obo:SO_0001335c obo:SO_0001326c obo:SO_0001333c |
| URI | http://purl.obolibrary.org/obo/SO_0001277 |
|---|---|
| Super-classes |
obo:SO_0000250c |
| Sub-classes |
obo:SO_0001381c obo:SO_0001346c obo:SO_0001361c obo:SO_0001382c obo:SO_0001365c obo:SO_0001366c obo:SO_0001364c obo:SO_0001350c obo:SO_0001377c obo:SO_0001357c obo:SO_0001375c obo:SO_0001347c obo:SO_0001355c obo:SO_0001368c obo:SO_0001369c obo:SO_0001349c obo:SO_0001351c obo:SO_0001376c obo:SO_0001371c obo:SO_0001362c obo:SO_0001228c obo:SO_0001359c obo:SO_0001367c obo:SO_0001363c obo:SO_0001360c obo:SO_0001353c obo:SO_0001356c obo:SO_0001370c obo:SO_0001344c obo:SO_0001373c obo:SO_0001348c obo:SO_0001380c obo:SO_0001229c obo:SO_0001372c obo:SO_0001374c obo:SO_0001354c obo:SO_0001345c obo:SO_0001379c obo:SO_0001352c obo:SO_0001378c obo:SO_0001358c |
| URI | http://purl.obolibrary.org/obo/SO_0001278 |
|---|---|
| Super-classes |
obo:SO_0001274c |
| URI | http://purl.obolibrary.org/obo/SO_0001279 |
|---|---|
| Super-classes |
obo:SO_0001274c |
| URI | http://purl.obolibrary.org/obo/SO_0001280 |
|---|---|
| Super-classes |
obo:SO_0001274c |
| URI | http://purl.obolibrary.org/obo/SO_0001281 |
|---|---|
| Super-classes |
obo:SO_0001275c |
| URI | http://purl.obolibrary.org/obo/SO_0001282 |
|---|---|
| Super-classes |
obo:SO_0001275c |
| URI | http://purl.obolibrary.org/obo/SO_0001283 |
|---|---|
| Super-classes |
obo:SO_0001275c |
| URI | http://purl.obolibrary.org/obo/SO_0001284 |
|---|---|
| Super-classes |
obo:SO_0001275c |
| URI | http://purl.obolibrary.org/obo/SO_0001285 |
|---|---|
| Super-classes |
obo:SO_0001275c |
| URI | http://purl.obolibrary.org/obo/SO_0001286 |
|---|---|
| Super-classes |
obo:SO_0001275c |
| URI | http://purl.obolibrary.org/obo/SO_0001287 |
|---|---|
| Super-classes |
obo:SO_0001275c |
| URI | http://purl.obolibrary.org/obo/SO_0001288 |
|---|---|
| Super-classes |
obo:SO_0001275c |
| URI | http://purl.obolibrary.org/obo/SO_0001289 |
|---|---|
| Super-classes |
obo:SO_0001275c |
| URI | http://purl.obolibrary.org/obo/SO_0001290 |
|---|---|
| Super-classes |
obo:SO_0001275c |
| URI | http://purl.obolibrary.org/obo/SO_0001291 |
|---|---|
| Super-classes |
obo:SO_0001275c |
| URI | http://purl.obolibrary.org/obo/SO_0001292 |
|---|---|
| Super-classes |
obo:SO_0001275c |
| URI | http://purl.obolibrary.org/obo/SO_0001293 |
|---|---|
| Super-classes |
obo:SO_0001275c |
| URI | http://purl.obolibrary.org/obo/SO_0001294 |
|---|---|
| Super-classes |
obo:SO_0001275c |
| URI | http://purl.obolibrary.org/obo/SO_0001295 |
|---|---|
| Super-classes |
obo:SO_0001273c |
| URI | http://purl.obolibrary.org/obo/SO_0001296 |
|---|---|
| Super-classes |
obo:SO_0001273c |
| URI | http://purl.obolibrary.org/obo/SO_0001297 |
|---|---|
| Super-classes |
obo:SO_0001273c |
| URI | http://purl.obolibrary.org/obo/SO_0001298 |
|---|---|
| Super-classes |
obo:SO_0001273c |
| URI | http://purl.obolibrary.org/obo/SO_0001299 |
|---|---|
| Super-classes |
obo:SO_0001273c |
| URI | http://purl.obolibrary.org/obo/SO_0001300 |
|---|---|
| Super-classes |
obo:SO_0001273c |
| URI | http://purl.obolibrary.org/obo/SO_0001301 |
|---|---|
| Super-classes |
obo:SO_0001273c |
| URI | http://purl.obolibrary.org/obo/SO_0001302 |
|---|---|
| Super-classes |
obo:SO_0001273c |
| URI | http://purl.obolibrary.org/obo/SO_0001303 |
|---|---|
| Super-classes |
obo:SO_0001273c |
| URI | http://purl.obolibrary.org/obo/SO_0001304 |
|---|---|
| Super-classes |
obo:SO_0001273c |
| URI | http://purl.obolibrary.org/obo/SO_0001305 |
|---|---|
| Super-classes |
obo:SO_0001273c |
| URI | http://purl.obolibrary.org/obo/SO_0001306 |
|---|---|
| Super-classes |
obo:SO_0001273c |
| URI | http://purl.obolibrary.org/obo/SO_0001307 |
|---|---|
| Super-classes |
obo:SO_0001273c |
| URI | http://purl.obolibrary.org/obo/SO_0001308 |
|---|---|
| Super-classes |
obo:SO_0001273c |
| URI | http://purl.obolibrary.org/obo/SO_0001309 |
|---|---|
| Super-classes |
obo:SO_0001273c |
| URI | http://purl.obolibrary.org/obo/SO_0001310 |
|---|---|
| Super-classes |
obo:SO_0001273c |
| URI | http://purl.obolibrary.org/obo/SO_0001311 |
|---|---|
| Super-classes |
obo:SO_0001273c |
| URI | http://purl.obolibrary.org/obo/SO_0001312 |
|---|---|
| Super-classes |
obo:SO_0001273c |
| URI | http://purl.obolibrary.org/obo/SO_0001313 |
|---|---|
| Super-classes |
obo:SO_0001273c |
| URI | http://purl.obolibrary.org/obo/SO_0001314 |
|---|---|
| Super-classes |
obo:SO_0001273c |
| URI | http://purl.obolibrary.org/obo/SO_0001315 |
|---|---|
| Super-classes |
obo:SO_0001273c |
| URI | http://purl.obolibrary.org/obo/SO_0001316 |
|---|---|
| Super-classes |
obo:SO_0001276c |
| Sub-classes |
obo:SO_0001319c obo:SO_0001322c obo:SO_0001321c obo:SO_0001323c obo:SO_0001320c obo:SO_0001318c obo:SO_0001317c |
| URI | http://purl.obolibrary.org/obo/SO_0001317 |
|---|---|
| Super-classes |
obo:SO_0001316c |
| URI | http://purl.obolibrary.org/obo/SO_0001318 |
|---|---|
| Super-classes |
obo:SO_0001316c |
| URI | http://purl.obolibrary.org/obo/SO_0001319 |
|---|---|
| Super-classes |
obo:SO_0001316c |
| URI | http://purl.obolibrary.org/obo/SO_0001320 |
|---|---|
| Super-classes |
obo:SO_0001316c |
| URI | http://purl.obolibrary.org/obo/SO_0001321 |
|---|---|
| Super-classes |
obo:SO_0001316c |
| URI | http://purl.obolibrary.org/obo/SO_0001322 |
|---|---|
| Super-classes |
obo:SO_0001316c |
| URI | http://purl.obolibrary.org/obo/SO_0001323 |
|---|---|
| Super-classes |
obo:SO_0001316c |
| URI | http://purl.obolibrary.org/obo/SO_0001324 |
|---|---|
| Super-classes |
obo:SO_0001276c |
| URI | http://purl.obolibrary.org/obo/SO_0001325 |
|---|---|
| Super-classes |
obo:SO_0001276c |
| URI | http://purl.obolibrary.org/obo/SO_0001326 |
|---|---|
| Super-classes |
obo:SO_0001276c |
| URI | http://purl.obolibrary.org/obo/SO_0001327 |
|---|---|
| Super-classes |
obo:SO_0001276c |
| URI | http://purl.obolibrary.org/obo/SO_0001328 |
|---|---|
| Super-classes |
obo:SO_0001276c |
| URI | http://purl.obolibrary.org/obo/SO_0001329 |
|---|---|
| Super-classes |
obo:SO_0001276c |
| URI | http://purl.obolibrary.org/obo/SO_0001330 |
|---|---|
| Super-classes |
obo:SO_0001276c |
| URI | http://purl.obolibrary.org/obo/SO_0001331 |
|---|---|
| Super-classes |
obo:SO_0001276c |
| URI | http://purl.obolibrary.org/obo/SO_0001332 |
|---|---|
| Super-classes |
obo:SO_0001276c |
| URI | http://purl.obolibrary.org/obo/SO_0001333 |
|---|---|
| Super-classes |
obo:SO_0001276c |
| URI | http://purl.obolibrary.org/obo/SO_0001334 |
|---|---|
| Super-classes |
obo:SO_0001276c |
| URI | http://purl.obolibrary.org/obo/SO_0001335 |
|---|---|
| Super-classes |
obo:SO_0001276c |
| URI | http://purl.obolibrary.org/obo/SO_0001336 |
|---|---|
| Super-classes |
obo:SO_0001276c |
| URI | http://purl.obolibrary.org/obo/SO_0001337 |
|---|---|
| Super-classes |
obo:SO_0001276c |
| URI | http://purl.obolibrary.org/obo/SO_0001338 |
|---|---|
| Super-classes |
obo:SO_0001276c |
| URI | http://purl.obolibrary.org/obo/SO_0001339 |
|---|---|
| Super-classes |
obo:SO_0001276c |
| URI | http://purl.obolibrary.org/obo/SO_0001340 |
|---|---|
| Super-classes |
obo:SO_0001276c |
| URI | http://purl.obolibrary.org/obo/SO_0001341 |
|---|---|
| Super-classes |
obo:SO_0001276c |
| URI | http://purl.obolibrary.org/obo/SO_0001342 |
|---|---|
| Super-classes |
obo:SO_0001276c |
| URI | http://purl.obolibrary.org/obo/SO_0001343 |
|---|---|
| Super-classes |
obo:SO_0001276c |
| URI | http://purl.obolibrary.org/obo/SO_0001344 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001345 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001346 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001347 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001348 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001349 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001350 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001351 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001352 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001353 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001354 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001355 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001356 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001357 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001358 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001359 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001360 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001361 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001362 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001363 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001364 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001365 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001366 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001367 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001368 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001369 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001370 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001371 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001372 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001373 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001374 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001375 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001376 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001377 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001378 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001379 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001380 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001381 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001382 |
|---|---|
| Super-classes |
obo:SO_0001277c |
| URI | http://purl.obolibrary.org/obo/SO_0001383 |
|---|---|
| Super-classes |
obo:SO_0001654c |
| URI | http://purl.obolibrary.org/obo/SO_0001384 |
|---|---|
| Super-classes |
obo:SO_0000316c |
| Restrictions |
so:has_qualityop some obo:SO_0000731c |
| URI | http://purl.obolibrary.org/obo/SO_0001385 |
|---|---|
| Super-classes |
obo:SO_0001237c |
| Sub-classes |
obo:SO_0001400c obo:SO_0001398c obo:SO_0001399c obo:SO_0001402c obo:SO_0001392c obo:SO_0001393c obo:SO_0001388c obo:SO_0001395c obo:SO_0001404c obo:SO_0001401c obo:SO_0001390c obo:SO_0001405c obo:SO_0001391c obo:SO_0001389c obo:SO_0001396c obo:SO_0001387c obo:SO_0001386c obo:SO_0001406c obo:SO_0001403c obo:SO_0001397c obo:SO_0001394c |
| URI | http://purl.obolibrary.org/obo/SO_0001386 |
|---|---|
| Super-classes |
obo:SO_0001385c |
| URI | http://purl.obolibrary.org/obo/SO_0001387 |
|---|---|
| Super-classes |
obo:SO_0001385c |
| URI | http://purl.obolibrary.org/obo/SO_0001388 |
|---|---|
| Super-classes |
obo:SO_0001385c |
| URI | http://purl.obolibrary.org/obo/SO_0001389 |
|---|---|
| Super-classes |
obo:SO_0001385c |
| URI | http://purl.obolibrary.org/obo/SO_0001390 |
|---|---|
| Super-classes |
obo:SO_0001385c |
| URI | http://purl.obolibrary.org/obo/SO_0001391 |
|---|---|
| Super-classes |
obo:SO_0001385c |
| URI | http://purl.obolibrary.org/obo/SO_0001392 |
|---|---|
| Super-classes |
obo:SO_0001385c |
| URI | http://purl.obolibrary.org/obo/SO_0001393 |
|---|---|
| Super-classes |
obo:SO_0001385c |
| URI | http://purl.obolibrary.org/obo/SO_0001394 |
|---|---|
| Super-classes |
obo:SO_0001385c |
| URI | http://purl.obolibrary.org/obo/SO_0001395 |
|---|---|
| Super-classes |
obo:SO_0001385c |
| URI | http://purl.obolibrary.org/obo/SO_0001396 |
|---|---|
| Super-classes |
obo:SO_0001385c |
| URI | http://purl.obolibrary.org/obo/SO_0001397 |
|---|---|
| Super-classes |
obo:SO_0001385c |
| URI | http://purl.obolibrary.org/obo/SO_0001398 |
|---|---|
| Super-classes |
obo:SO_0001385c |
| URI | http://purl.obolibrary.org/obo/SO_0001399 |
|---|---|
| Super-classes |
obo:SO_0001385c |
| URI | http://purl.obolibrary.org/obo/SO_0001400 |
|---|---|
| Super-classes |
obo:SO_0001385c |
| URI | http://purl.obolibrary.org/obo/SO_0001401 |
|---|---|
| Super-classes |
obo:SO_0001385c |
| URI | http://purl.obolibrary.org/obo/SO_0001402 |
|---|---|
| Super-classes |
obo:SO_0001385c |
| URI | http://purl.obolibrary.org/obo/SO_0001403 |
|---|---|
| Super-classes |
obo:SO_0001385c |
| URI | http://purl.obolibrary.org/obo/SO_0001404 |
|---|---|
| Super-classes |
obo:SO_0001385c |
| URI | http://purl.obolibrary.org/obo/SO_0001405 |
|---|---|
| Super-classes |
obo:SO_0001385c |
| URI | http://purl.obolibrary.org/obo/SO_0001406 |
|---|---|
| Super-classes |
obo:SO_0001385c |
| URI | http://purl.obolibrary.org/obo/SO_0001407 |
|---|---|
| Super-classes |
obo:SO_0000443c |
| URI | http://purl.obolibrary.org/obo/SO_0001408 |
|---|---|
| Super-classes |
obo:SO_0100011c |
| URI | http://purl.obolibrary.org/obo/SO_0001409 |
|---|---|
| Super-classes |
obo:SO_0000001c |
| Sub-classes |
obo:SO_0000804c obo:SO_0000695c |
| URI | http://purl.obolibrary.org/obo/SO_0001410 |
|---|---|
| Super-classes |
obo:SO_0000001c |
| Sub-classes |
obo:SO_0001502c obo:SO_0000039c obo:SO_0001457c obo:SO_0001696c obo:SO_0000343c obo:SO_0001418c obo:SO_0000330c obo:SO_0001642c obo:SO_0000994c obo:SO_0000143c obo:SO_0000717c obo:SO_0001248c obo:SO_0000700c obo:SO_0001915c obo:SO_0002248c obo:SO_0001005c |
| URI | http://purl.obolibrary.org/obo/SO_0001411 |
|---|---|
| Super-classes |
obo:SO_0000001c |
| Sub-classes |
obo:SO_0000667c obo:SO_0000833c obo:SO_0002186c obo:SO_0000336c obo:SO_0000297c obo:SO_0000159c obo:SO_0000609c obo:SO_0000704c obo:SO_0001236c obo:SO_1001275c obo:SO_0000830c obo:SO_0002300c obo:SO_0001683c obo:SO_0000104c obo:SO_1000002c obo:SO_0000657c obo:SO_0000307c obo:SO_0000462c obo:SO_0001645c obo:SO_0001235c obo:SO_0000610c obo:SO_0000002c obo:SO_0001747c obo:SO_0000842c obo:SO_0000298c obo:SO_0001872c obo:SO_0001037c obo:SO_0000581c obo:SO_1000036c obo:SO_0001237c obo:SO_0000409c obo:SO_0000771c obo:SO_0000726c obo:SO_0001985c obo:SO_0005855c obo:SO_0000296c obo:SO_0001954c obo:SO_0000831c obo:SO_0000018c obo:SO_0002331c obo:SO_0000839c obo:SO_0000605c obo:SO_0002259c |
| URI | http://purl.obolibrary.org/obo/SO_0001412 |
|---|---|
| Super-classes |
obo:SO_0000001c |
| Sub-classes |
obo:SO_0002304c obo:SO_0000239c obo:SO_0000840c |
| URI | http://purl.obolibrary.org/obo/SO_0001413 |
|---|---|
| Super-classes |
obo:SO_0001021c |
| URI | http://purl.obolibrary.org/obo/SO_0001414 |
|---|---|
| Super-classes |
obo:SO_0001021c |
| URI | http://purl.obolibrary.org/obo/SO_0001415 |
|---|---|
| Super-classes |
obo:SO_0001021c |
| URI | http://purl.obolibrary.org/obo/SO_0001416 |
|---|---|
| Super-classes |
obo:SO_0000239c |
| URI | http://purl.obolibrary.org/obo/SO_0001417 |
|---|---|
| Super-classes |
obo:SO_0000239c |
| URI | http://purl.obolibrary.org/obo/SO_0001418 |
|---|---|
| Description |
Term requested by the MODencode group. |
| Super-classes |
obo:SO_0001410c |
| URI | http://purl.obolibrary.org/obo/SO_0001419 |
|---|---|
| Super-classes |
obo:SO_0000162c |
| Sub-classes |
obo:SO_0000998c obo:SO_0000164c obo:SO_0000163c obo:SO_0001993c |
| URI | http://purl.obolibrary.org/obo/SO_0001420 |
|---|---|
| Super-classes |
obo:SO_0000162c |
| Sub-classes |
obo:SO_0000707c obo:SO_0000706c |
| URI | http://purl.obolibrary.org/obo/SO_0001421 |
|---|---|
| Super-classes |
obo:SO_0000699c |
| URI | http://purl.obolibrary.org/obo/SO_0001422 |
|---|---|
| Description |
MM Young, K Kirshenbaum, KA Dill & S Highsmith. Predicting conformational switches in proteins. Protein Science, 1999, 8, 1752-64. K. Kirshenbaum, M.M. Young and S. Highsmith. Predicting Allosteric Switches in Myosins. Protein Science 8(9):1806-1815. 1999. |
| Super-classes |
obo:SO_0100001c |
| URI | http://purl.obolibrary.org/obo/SO_0001423 |
|---|---|
| Super-classes |
obo:SO_0000150c |
| URI | http://purl.obolibrary.org/obo/SO_0001424 |
|---|---|
| Description |
An example is a read produced by Roche 454 technology. |
| Super-classes |
obo:SO_0000150c |
| URI | http://purl.obolibrary.org/obo/SO_0001425 |
|---|---|
| Description |
An example of this kind of read is one produced by ABI SOLiD. |
| Super-classes |
obo:SO_0000150c |
| URI | http://purl.obolibrary.org/obo/SO_0001426 |
|---|---|
| Description |
An example is a read produced by Illumina technology. |
| Super-classes |
obo:SO_0000150c |
| URI | http://purl.obolibrary.org/obo/SO_0001427 |
|---|---|
| Description |
Moved from transcription_regulatory_region (SO:0001679) to transcriptional_cis_regulatory_region (SO:0001055) by Dave Sant on Feb 11, 2021 when transcription_regulatory_region was merged into transcriptional_cis_regulatory_region to be consistent with GO and reduce redundancy as part of the GREEKC consortium. See GitHub Issue #527. |
| Super-classes |
obo:SO_0001055c |
| URI | http://purl.obolibrary.org/obo/SO_0001428 |
|---|---|
| Description |
From tracker [ 2372385 ] expressed_sequence_assembly. |
| Super-classes |
obo:SO_0000353c |
| URI | http://purl.obolibrary.org/obo/SO_0001429 |
|---|---|
| Super-classes |
obo:SO_0001655c |
| Sub-classes |
obo:SO_0100020c obo:SO_0001971c |
| URI | http://purl.obolibrary.org/obo/SO_0001431 |
|---|---|
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:has_qualityop some obo:SO_0000976c |
| Sub-classes |
obo:SO_1001196c |
| URI | http://purl.obolibrary.org/obo/SO_0001432 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_0001433 |
|---|---|
| Super-classes |
obo:SO_0000317c |
| URI | http://purl.obolibrary.org/obo/SO_0001434 |
|---|---|
| Description |
Requested by the Trypanosome community. |
| Super-classes |
obo:SO_0001760c |
| URI | http://purl.obolibrary.org/obo/SO_0001435 |
|---|---|
| Description |
A place holder for a cross product with chebi. |
| Super-classes |
obo:SO_0001237c |
| URI | http://purl.obolibrary.org/obo/SO_0001436 |
|---|---|
| Description |
A place holder for a cross product with chebi. |
| Super-classes |
obo:SO_0001237c |
| URI | http://purl.obolibrary.org/obo/SO_0001437 |
|---|---|
| Description |
A place holder for a cross product with chebi. |
| Super-classes |
obo:SO_0001237c |
| URI | http://purl.obolibrary.org/obo/SO_0001438 |
|---|---|
| Description |
A place holder for a cross product with chebi. |
| Super-classes |
obo:SO_0001237c |
| URI | http://purl.obolibrary.org/obo/SO_0001439 |
|---|---|
| Description |
A place holder for a cross product with chebi. |
| Super-classes |
obo:SO_0001237c |
| URI | http://purl.obolibrary.org/obo/SO_0001440 |
|---|---|
| Description |
A place holder for a cross product with chebi. |
| Super-classes |
obo:SO_0001237c |
| URI | http://purl.obolibrary.org/obo/SO_0001441 |
|---|---|
| Description |
A place holder for a cross product with chebi. |
| Super-classes |
obo:SO_0001237c |
| URI | http://purl.obolibrary.org/obo/SO_0001442 |
|---|---|
| Description |
A place holder for a cross product with chebi. |
| Super-classes |
obo:SO_0001237c |
| URI | http://purl.obolibrary.org/obo/SO_0001443 |
|---|---|
| Description |
A place holder for a cross product with chebi. |
| Super-classes |
obo:SO_0001237c |
| URI | http://purl.obolibrary.org/obo/SO_0001444 |
|---|---|
| Description |
A place holder for a cross product with chebi. |
| Super-classes |
obo:SO_0001237c |
| URI | http://purl.obolibrary.org/obo/SO_0001445 |
|---|---|
| Description |
A place holder for a cross product with chebi. |
| Super-classes |
obo:SO_0001237c |
| URI | http://purl.obolibrary.org/obo/SO_0001446 |
|---|---|
| Description |
A place holder for a cross product with chebi. |
| Super-classes |
obo:SO_0001237c |
| URI | http://purl.obolibrary.org/obo/SO_0001447 |
|---|---|
| Description |
A place holder for a cross product with chebi. |
| Super-classes |
obo:SO_0001237c |
| URI | http://purl.obolibrary.org/obo/SO_0001448 |
|---|---|
| Description |
A place holder for a cross product with chebi. |
| Super-classes |
obo:SO_0001237c |
| URI | http://purl.obolibrary.org/obo/SO_0001449 |
|---|---|
| Description |
A place holder for a cross product with chebi. |
| Super-classes |
obo:SO_0001237c |
| URI | http://purl.obolibrary.org/obo/SO_0001450 |
|---|---|
| Description |
A place holder for a cross product with chebi. |
| Super-classes |
obo:SO_0001237c |
| URI | http://purl.obolibrary.org/obo/SO_0001451 |
|---|---|
| Description |
A place holder for a cross product with chebi. |
| Super-classes |
obo:SO_0001237c |
| URI | http://purl.obolibrary.org/obo/SO_0001452 |
|---|---|
| Description |
A place holder for a cross product with chebi. |
| Super-classes |
obo:SO_0001237c |
| URI | http://purl.obolibrary.org/obo/SO_0001453 |
|---|---|
| Description |
A place holder for a cross product with chebi. |
| Super-classes |
obo:SO_0001237c |
| URI | http://purl.obolibrary.org/obo/SO_0001454 |
|---|---|
| Description |
A place holder for a cross product with chebi. |
| Super-classes |
obo:SO_0001237c |
| URI | http://purl.obolibrary.org/obo/SO_0001455 |
|---|---|
| Description |
A place holder for a cross product with chebi. |
| Super-classes |
obo:SO_0001237c |
| URI | http://purl.obolibrary.org/obo/SO_0001456 |
|---|---|
| Description |
A place holder for a cross product with chebi. |
| Super-classes |
obo:SO_0001237c |
| URI | http://purl.obolibrary.org/obo/SO_0001457 |
|---|---|
| Description |
This term was requested by Jeff Bowes, using the tracker, ID = 2594157. |
| Super-classes |
obo:SO_0001410c |
| Restrictions |
so:has_partop some obo:SO_0000695c |
| Sub-classes |
obo:SO_0001458c |
| URI | http://purl.obolibrary.org/obo/SO_0001458 |
|---|---|
| Description |
This term was requested by Jeff Bowes, using the tracker, ID = 2594157. |
| Super-classes |
obo:SO_0001457c |
| URI | http://purl.obolibrary.org/obo/SO_0001459 |
|---|---|
| Super-classes |
obo:SO_0000314c |
| URI | http://purl.obolibrary.org/obo/SO_0001460 |
|---|---|
| Description |
See tracker ID 2060908. |
| Super-classes |
obo:SO_0001654c |
| Restrictions |
so:part_ofop some obo:SO_0000627c |
| URI | http://purl.obolibrary.org/obo/SO_0001461 |
|---|---|
| Super-classes |
obo:SO_0001654c |
| Restrictions |
so:part_ofop some obo:SO_0000165c |
| Sub-classes |
obo:SO_0002046c |
| URI | http://purl.obolibrary.org/obo/SO_0001462 |
|---|---|
| Description |
See tracker ID: 2138359. |
| Super-classes |
obo:SO_0001260c obo:SO_0001085c |
| Restrictions |
so:has_partop some obo:SO_0000149c |
| URI | http://purl.obolibrary.org/obo/SO_0001463 |
|---|---|
| Super-classes |
obo:SO_0001877c |
| URI | http://purl.obolibrary.org/obo/SO_0001464 |
|---|---|
| Super-classes |
obo:SO_0000345c |
| Sub-classes |
obo:SO_0001466c obo:SO_0001465c |
| URI | http://purl.obolibrary.org/obo/SO_0001465 |
|---|---|
| Super-classes |
obo:SO_0001464c |
| URI | http://purl.obolibrary.org/obo/SO_0001466 |
|---|---|
| Super-classes |
obo:SO_0001464c |
| URI | http://purl.obolibrary.org/obo/SO_0001467 |
|---|---|
| Super-classes |
obo:SO_0000345c |
| Sub-classes |
obo:SO_0001469c obo:SO_0001468c |
| URI | http://purl.obolibrary.org/obo/SO_0001468 |
|---|---|
| Super-classes |
obo:SO_0001467c |
| URI | http://purl.obolibrary.org/obo/SO_0001469 |
|---|---|
| Super-classes |
obo:SO_0001467c |
| URI | http://purl.obolibrary.org/obo/SO_0001470 |
|---|---|
| Super-classes |
obo:SO_0000102c |
| URI | http://purl.obolibrary.org/obo/SO_0001471 |
|---|---|
| Super-classes |
obo:SO_0000102c |
| URI | http://purl.obolibrary.org/obo/SO_0001472 |
|---|---|
| Super-classes |
obo:SO_0000347c |
| URI | http://purl.obolibrary.org/obo/SO_0001473 |
|---|---|
| Super-classes |
obo:SO_0001243c |
| URI | http://purl.obolibrary.org/obo/SO_0001474 |
|---|---|
| Super-classes |
obo:SO_0000699c |
| URI | http://purl.obolibrary.org/obo/SO_0001475 |
|---|---|
| Super-classes |
obo:SO_0000835c |
| URI | http://purl.obolibrary.org/obo/SO_0001476 |
|---|---|
| Super-classes |
obo:SO_0000155c obo:SO_0001038c |
| Restrictions |
so:has_qualityop some obo:SO_0000782c |
| URI | http://purl.obolibrary.org/obo/SO_0001477 |
|---|---|
| Super-classes |
obo:SO_0000637c |
| URI | http://purl.obolibrary.org/obo/SO_0001478 |
|---|---|
| Super-classes |
obo:SO_0000637c |
| URI | http://purl.obolibrary.org/obo/SO_0001479 |
|---|---|
| Super-classes |
obo:SO_0000637c |
| URI | http://purl.obolibrary.org/obo/SO_0001480 |
|---|---|
| Super-classes |
obo:SO_0000150c |
| Restrictions |
so:part_ofop some obo:SO_0000154c |
| URI | http://purl.obolibrary.org/obo/SO_0001481 |
|---|---|
| Super-classes |
obo:SO_0000006c |
| URI | http://purl.obolibrary.org/obo/SO_0001482 |
|---|---|
| Super-classes |
obo:SO_0000165c |
| URI | http://purl.obolibrary.org/obo/SO_0001483 |
|---|---|
| Super-classes |
obo:SO_1000002c |
| Sub-classes |
obo:SO_1000008c obo:SO_1000009c obo:SO_1000017c obo:SO_0000694c |
| URI | http://purl.obolibrary.org/obo/SO_0001484 |
|---|---|
| Description |
X element combinatorial repeats contain Tbf1p binding sites, and possible functions include a role in telomerase-independent telomere maintenance via recombination or as a barrier against transcriptional silencing. These are usually present as a combination of one or more of several types of smaller elements (designated A, B, C, or D). This term was requested 2009-10-16 by Michel Dumontier, tracker id 2880747. |
| Super-classes |
obo:SO_0000657c |
| Restrictions |
so:part_ofop some obo:SO_0000624c |
| URI | http://purl.obolibrary.org/obo/SO_0001485 |
|---|---|
| Description |
This term was requested 2009-10-16 by Michel Dumontier, tracker id 2880747. |
| Super-classes |
obo:SO_0000657c |
| Restrictions |
so:part_ofop some obo:SO_0000624c |
| URI | http://purl.obolibrary.org/obo/SO_0001486 |
|---|---|
| Super-classes |
obo:SO_0001499c |
| URI | http://purl.obolibrary.org/obo/SO_0001487 |
|---|---|
| Super-classes |
obo:SO_0001499c |
| URI | http://purl.obolibrary.org/obo/SO_0001488 |
|---|---|
| Super-classes |
obo:SO_0001499c |
| URI | http://purl.obolibrary.org/obo/SO_0001489 |
|---|---|
| Super-classes |
obo:SO_0001499c |
| URI | http://purl.obolibrary.org/obo/SO_0001490 |
|---|---|
| Super-classes |
obo:SO_0001499c |
| URI | http://purl.obolibrary.org/obo/SO_0001491 |
|---|---|
| Super-classes |
obo:SO_0001499c |
| URI | http://purl.obolibrary.org/obo/SO_0001492 |
|---|---|
| Description |
Moved from transcription_regulatory_region (SO:0001679) to transcriptional_cis_regulatory_region (SO:0001055) by Dave Sant on Feb 11, 2021 when transcription_regulatory_region was merged into transcriptional_cis_regulatory_region to be consistent with GO and reduce redundancy as part of the GREEKC consortium. See GitHub Issue #527. |
| Super-classes |
obo:SO_0001055c |
| Restrictions |
so:part_ofop some obo:SO_0000188c |
| URI | http://purl.obolibrary.org/obo/SO_0001493 |
|---|---|
| Description |
This term was requested 2009-10-16 by Michel Dumontier, tracker id 2880699. |
| Super-classes |
obo:SO_0000330c |
| Restrictions |
so:part_ofop some obo:SO_0001794c |
| URI | http://purl.obolibrary.org/obo/SO_0001494 |
|---|---|
| Description |
This term was requested 2009-10-16 by Michel Dumontier, tracker id 2880699. |
| Super-classes |
obo:SO_0000330c |
| Restrictions |
so:part_ofop some obo:SO_0001794c |
| URI | http://purl.obolibrary.org/obo/SO_0001495 |
|---|---|
| Description |
This term was requested 2009-10-16 by Michel Dumontier, tracker id 2880699. |
| Super-classes |
obo:SO_0000330c |
| Restrictions |
so:part_ofop some obo:SO_0001794c |
| URI | http://purl.obolibrary.org/obo/SO_0001496 |
|---|---|
| Description |
The repeats are maintained by telomerase and there is generally 300 (+/-) 75 bp of TG(1-3) at a given end. Telomeric repeats function in completing chromosome replication and protecting the ends from degradation and end-to-end fusions. This term was requested 2009-10-16 by Michel Dumontier, tracker id 2880739. |
| Super-classes |
obo:SO_0000657c |
| Restrictions |
so:part_ofop some obo:SO_0000624c |
| URI | http://purl.obolibrary.org/obo/SO_0001497 |
|---|---|
| Description |
Possible functions include roles in chromosomal segregation, maintenance of chromosome stability, recombinational sequestering, or as a barrier to transcriptional silencing. This term was requested 2009-10-16 by Michel Dumontier, tracker id 2880747. From Janos Demeter: The only region shared by all chromosome ends, the X element core sequence is a small conserved element (~475 bp) that contains an ARS sequence and in most cases an Abf1p binding site. Between these is a GC-rich region nearly identical to the meiosis-specific regulatory sequence URS1. |
| Super-classes |
obo:SO_0000330c |
| Restrictions |
so:part_ofop some obo:SO_0000624c |
| URI | http://purl.obolibrary.org/obo/SO_0001498 |
|---|---|
| Super-classes |
obo:SO_0000150c |
| Restrictions |
so:part_ofop some obo:SO_0000152c |
| URI | http://purl.obolibrary.org/obo/SO_0001499 |
|---|---|
| Description |
This terms and children were added to SO in response to tracker request by Patrick Chain. The paper Genome Project Standards in a New Era of Sequencing. Science October 9th 2009, addresses these terms. |
| Super-classes |
obo:SO_0000905c |
| Sub-classes |
obo:SO_0001489c obo:SO_0001486c obo:SO_0001490c obo:SO_0001491c obo:SO_0001488c obo:SO_0001487c |
| URI | http://purl.obolibrary.org/obo/SO_0001500 |
|---|---|
| Super-classes |
obo:SO_0001645c |
| URI | http://purl.obolibrary.org/obo/SO_0001501 |
|---|---|
| Description |
Term requested via tracker ID: 2910829. |
| Super-classes |
obo:SO_0001260c |
| Restrictions |
so:has_partop some obo:SO_0000104c |
| URI | http://purl.obolibrary.org/obo/SO_0001502 |
|---|---|
| Description |
Requested by tracker ID: 2902685. |
| Super-classes |
obo:SO_0001410c |
| URI | http://purl.obolibrary.org/obo/SO_0001503 |
|---|---|
| Description |
Ensembl and Vega also use this term name. Requested by Howard Deen of MGI. |
| Super-classes |
obo:SO_0000673c |
| Sub-classes |
obo:SO_0002111c |
| URI | http://purl.obolibrary.org/obo/SO_0001504 |
|---|---|
| Super-classes |
obo:SO_0000240c |
| Sub-classes |
obo:SO_0000802c obo:SO_0000803c obo:SO_0000800c obo:SO_0000801c |
| URI | http://purl.obolibrary.org/obo/SO_0001505 |
|---|---|
| Super-classes |
obo:SO_0001026c |
| URI | http://purl.obolibrary.org/obo/SO_0001506 |
|---|---|
| Super-classes |
obo:SO_0001026c |
| Sub-classes |
obo:SO_0001524c |
| URI | http://purl.obolibrary.org/obo/SO_0001507 |
|---|---|
| Super-classes |
obo:SO_0001260c |
| Restrictions |
so:has_partop some obo:SO_0001059c |
| Sub-classes |
obo:SO_0001028c obo:SO_0000240c obo:SO_0001023c obo:SO_0001024c obo:SO_0001027c |
| URI | http://purl.obolibrary.org/obo/SO_0001508 |
|---|---|
| Super-classes |
obo:SO_0000733c |
| Sub-classes |
obo:SO_0001523c obo:SO_0001512c obo:SO_0001509c obo:SO_0001520c obo:SO_0001517c |
| URI | http://purl.obolibrary.org/obo/SO_0001509 |
|---|---|
| Super-classes |
obo:SO_0001508c |
| Sub-classes |
obo:SO_0001510c obo:SO_0001511c |
| URI | http://purl.obolibrary.org/obo/SO_0001510 |
|---|---|
| Super-classes |
obo:SO_0001509c |
| URI | http://purl.obolibrary.org/obo/SO_0001511 |
|---|---|
| Super-classes |
obo:SO_0001509c |
| URI | http://purl.obolibrary.org/obo/SO_0001512 |
|---|---|
| Super-classes |
obo:SO_0001508c |
| Sub-classes |
obo:SO_0001513c obo:SO_0001515c obo:SO_0001514c |
| URI | http://purl.obolibrary.org/obo/SO_0001513 |
|---|---|
| Super-classes |
obo:SO_0001512c |
| URI | http://purl.obolibrary.org/obo/SO_0001514 |
|---|---|
| Super-classes |
obo:SO_0001512c |
| URI | http://purl.obolibrary.org/obo/SO_0001515 |
|---|---|
| Super-classes |
obo:SO_0001512c |
| URI | http://purl.obolibrary.org/obo/SO_0001516 |
|---|---|
| Super-classes |
obo:SO_0001523c |
| URI | http://purl.obolibrary.org/obo/SO_0001517 |
|---|---|
| Super-classes |
obo:SO_0001508c |
| Sub-classes |
obo:SO_0001519c obo:SO_0001518c |
| URI | http://purl.obolibrary.org/obo/SO_0001518 |
|---|---|
| Super-classes |
obo:SO_0001517c |
| URI | http://purl.obolibrary.org/obo/SO_0001519 |
|---|---|
| Super-classes |
obo:SO_0001517c |
| URI | http://purl.obolibrary.org/obo/SO_0001520 |
|---|---|
| Super-classes |
obo:SO_0001508c |
| Sub-classes |
obo:SO_0001521c obo:SO_0001522c |
| URI | http://purl.obolibrary.org/obo/SO_0001521 |
|---|---|
| Super-classes |
obo:SO_0001520c |
| URI | http://purl.obolibrary.org/obo/SO_0001522 |
|---|---|
| Super-classes |
obo:SO_0001520c |
| URI | http://purl.obolibrary.org/obo/SO_0001523 |
|---|---|
| Super-classes |
obo:SO_0001508c |
| Sub-classes |
obo:SO_0001516c |
| URI | http://purl.obolibrary.org/obo/SO_0001524 |
|---|---|
| Super-classes |
obo:SO_0001506c |
| URI | http://purl.obolibrary.org/obo/SO_0001525 |
|---|---|
| Super-classes |
obo:SO_0000413c |
| URI | http://purl.obolibrary.org/obo/SO_0001526 |
|---|---|
| Super-classes |
obo:SO_0000413c |
| URI | http://purl.obolibrary.org/obo/SO_0001527 |
|---|---|
| Super-classes |
obo:SO_0000839c |
| Sub-classes |
obo:SO_0001531c obo:SO_0001529c obo:SO_0001528c obo:SO_0001530c obo:SO_0001534c obo:SO_0001808c obo:SO_0000418c obo:SO_0000725c obo:SO_0001806c obo:SO_0001813c |
| URI | http://purl.obolibrary.org/obo/SO_0001528 |
|---|---|
| Super-classes |
obo:SO_0001527c |
| URI | http://purl.obolibrary.org/obo/SO_0001529 |
|---|---|
| Super-classes |
obo:SO_0001527c |
| URI | http://purl.obolibrary.org/obo/SO_0001530 |
|---|---|
| Super-classes |
obo:SO_0001527c |
| URI | http://purl.obolibrary.org/obo/SO_0001531 |
|---|---|
| Super-classes |
obo:SO_0001527c |
| URI | http://purl.obolibrary.org/obo/SO_0001532 |
|---|---|
| Super-classes |
obo:SO_0000299c |
| URI | http://purl.obolibrary.org/obo/SO_0001533 |
|---|---|
| Super-classes |
obo:SO_0000162c |
| URI | http://purl.obolibrary.org/obo/SO_0001534 |
|---|---|
| Super-classes |
obo:SO_0001527c |
| URI | http://purl.obolibrary.org/obo/SO_0001535 |
|---|---|
| Description |
Moved from under DNA_transposon (SO:0000182) by Dave Sant as per request from GitHub issue #488 on June 25, 2020 |
| Super-classes |
obo:SO_0000208c |
| URI | http://purl.obolibrary.org/obo/SO_0001536 |
|---|---|
| Description |
Updated after request from Lea Starita, lea.starita@gmail.com from the NCBI. |
| Super-classes |
obo:SO_0001060c |
| Sub-classes |
obo:SO_0002314c obo:SO_0002219c obo:SO_0002220c obo:SO_0002318c obo:SO_0002218c |
| URI | http://purl.obolibrary.org/obo/SO_0001537 |
|---|---|
| Super-classes |
obo:SO_0001060c |
| Sub-classes |
obo:SO_0002160c obo:SO_0001880c obo:SO_0001879c obo:SO_0001878c obo:SO_0001882c obo:SO_0001881c |
| URI | http://purl.obolibrary.org/obo/SO_0001538 |
|---|---|
| Super-classes |
obo:SO_0002218c |
| Sub-classes |
obo:SO_0001540c obo:SO_0001549c obo:SO_0001546c obo:SO_0001543c |
| URI | http://purl.obolibrary.org/obo/SO_0001539 |
|---|---|
| Super-classes |
obo:SO_0002218c |
| Sub-classes |
obo:SO_0001553c obo:SO_0001554c obo:SO_0001599c obo:SO_0001602c |
| URI | http://purl.obolibrary.org/obo/SO_0001540 |
|---|---|
| Super-classes |
obo:SO_0001538c |
| Sub-classes |
obo:SO_0001542c obo:SO_0001541c |
| URI | http://purl.obolibrary.org/obo/SO_0001541 |
|---|---|
| Super-classes |
obo:SO_0001540c |
| URI | http://purl.obolibrary.org/obo/SO_0001542 |
|---|---|
| Super-classes |
obo:SO_0001540c |
| URI | http://purl.obolibrary.org/obo/SO_0001543 |
|---|---|
| Super-classes |
obo:SO_0001538c |
| Sub-classes |
obo:SO_0001544c obo:SO_0001545c |
| URI | http://purl.obolibrary.org/obo/SO_0001544 |
|---|---|
| Super-classes |
obo:SO_0001543c |
| URI | http://purl.obolibrary.org/obo/SO_0001545 |
|---|---|
| Super-classes |
obo:SO_0001543c |
| Sub-classes |
obo:SO_0001802c obo:SO_0001803c |
| URI | http://purl.obolibrary.org/obo/SO_0001546 |
|---|---|
| Super-classes |
obo:SO_0001538c |
| Sub-classes |
obo:SO_0001547c obo:SO_0001548c |
| URI | http://purl.obolibrary.org/obo/SO_0001547 |
|---|---|
| Super-classes |
obo:SO_0001546c |
| URI | http://purl.obolibrary.org/obo/SO_0001548 |
|---|---|
| Super-classes |
obo:SO_0001546c |
| URI | http://purl.obolibrary.org/obo/SO_0001549 |
|---|---|
| Super-classes |
obo:SO_0001538c |
| Sub-classes |
obo:SO_0001550c |
| URI | http://purl.obolibrary.org/obo/SO_0001550 |
|---|---|
| Super-classes |
obo:SO_0001549c |
| Sub-classes |
obo:SO_0001552c obo:SO_0001551c |
| URI | http://purl.obolibrary.org/obo/SO_0001551 |
|---|---|
| Super-classes |
obo:SO_0001550c |
| URI | http://purl.obolibrary.org/obo/SO_0001552 |
|---|---|
| Super-classes |
obo:SO_0001550c |
| URI | http://purl.obolibrary.org/obo/SO_0001553 |
|---|---|
| Super-classes |
obo:SO_0001539c |
| Sub-classes |
obo:SO_0001555c obo:SO_0001556c |
| URI | http://purl.obolibrary.org/obo/SO_0001554 |
|---|---|
| Super-classes |
obo:SO_0001539c |
| Sub-classes |
obo:SO_0001559c obo:SO_0001558c obo:SO_0001562c obo:SO_0001557c |
| URI | http://purl.obolibrary.org/obo/SO_0001555 |
|---|---|
| Super-classes |
obo:SO_0001553c |
| URI | http://purl.obolibrary.org/obo/SO_0001556 |
|---|---|
| Super-classes |
obo:SO_0001553c |
| URI | http://purl.obolibrary.org/obo/SO_0001557 |
|---|---|
| Super-classes |
obo:SO_0001554c |
| URI | http://purl.obolibrary.org/obo/SO_0001558 |
|---|---|
| Super-classes |
obo:SO_0001554c |
| URI | http://purl.obolibrary.org/obo/SO_0001559 |
|---|---|
| Super-classes |
obo:SO_0001554c |
| Sub-classes |
obo:SO_0001560c obo:SO_0001561c |
| URI | http://purl.obolibrary.org/obo/SO_0001560 |
|---|---|
| Super-classes |
obo:SO_0001559c |
| Sub-classes |
obo:SO_0001618c |
| URI | http://purl.obolibrary.org/obo/SO_0001561 |
|---|---|
| Super-classes |
obo:SO_0001559c |
| URI | http://purl.obolibrary.org/obo/SO_0001562 |
|---|---|
| Super-classes |
obo:SO_0001554c |
| URI | http://purl.obolibrary.org/obo/SO_0001563 |
|---|---|
| Super-classes |
obo:SO_0002160c |
| Sub-classes |
obo:SO_0001912c obo:SO_0001911c |
| URI | http://purl.obolibrary.org/obo/SO_0001564 |
|---|---|
| Super-classes |
obo:SO_0001878c |
| Sub-classes |
obo:SO_0002153c obo:SO_0001598c obo:SO_0002152c obo:SO_0001576c obo:SO_0001565c |
| URI | http://purl.obolibrary.org/obo/SO_0001565 |
|---|---|
| Super-classes |
obo:SO_0001882c obo:SO_0001564c |
| Sub-classes |
obo:SO_0002085c obo:SO_0002086c |
| URI | http://purl.obolibrary.org/obo/SO_0001566 |
|---|---|
| Description |
EBI term: Regulatory region variations - In regulatory region annotated by Ensembl. |
| Super-classes |
obo:SO_0001878c |
| Sub-classes |
obo:SO_0001782c |
| URI | http://purl.obolibrary.org/obo/SO_0001567 |
|---|---|
| Super-classes |
obo:SO_0001590c obo:SO_0001819c |
| URI | http://purl.obolibrary.org/obo/SO_0001568 |
|---|---|
| Super-classes |
obo:SO_0001576c |
| Sub-classes |
obo:SO_0001573c obo:SO_0001629c obo:SO_0001630c obo:SO_0001995c obo:SO_0001572c obo:SO_0001569c obo:SO_0002169c |
| URI | http://purl.obolibrary.org/obo/SO_0001569 |
|---|---|
| Super-classes |
obo:SO_0001568c |
| Sub-classes |
obo:SO_0001571c obo:SO_0001570c |
| URI | http://purl.obolibrary.org/obo/SO_0001570 |
|---|---|
| Super-classes |
obo:SO_0001569c |
| URI | http://purl.obolibrary.org/obo/SO_0001571 |
|---|---|
| Super-classes |
obo:SO_0001569c |
| URI | http://purl.obolibrary.org/obo/SO_0001572 |
|---|---|
| Super-classes |
obo:SO_0001568c |
| URI | http://purl.obolibrary.org/obo/SO_0001573 |
|---|---|
| Super-classes |
obo:SO_0001568c |
| URI | http://purl.obolibrary.org/obo/SO_0001574 |
|---|---|
| Super-classes |
obo:SO_0001629c |
| Sub-classes |
obo:SO_0002327c obo:SO_0002328c |
| URI | http://purl.obolibrary.org/obo/SO_0001575 |
|---|---|
| Super-classes |
obo:SO_0001629c |
| Sub-classes |
obo:SO_0002326c obo:SO_0002325c |
| URI | http://purl.obolibrary.org/obo/SO_0001576 |
|---|---|
| Super-classes |
obo:SO_0001564c |
| Sub-classes |
obo:SO_0002075c obo:SO_0002011c obo:SO_0001621c obo:SO_0001968c obo:SO_0002244c obo:SO_0001627c obo:SO_0001568c obo:SO_0001619c obo:SO_0001791c obo:SO_0001577c obo:SO_0001596c |
| URI | http://purl.obolibrary.org/obo/SO_0001577 |
|---|---|
| Description |
EBI term: Complex InDel - Insertion or deletion that spans an exon/intron border or a coding sequence/UTR border. |
| Super-classes |
obo:SO_0001576c |
| URI | http://purl.obolibrary.org/obo/SO_0001578 |
|---|---|
| Description |
EBI term: Stop lost - In coding sequence, resulting in the loss of a stop codon. |
| Super-classes |
obo:SO_0001992c obo:SO_0001907c obo:SO_0001590c |
| URI | http://purl.obolibrary.org/obo/SO_0001580 |
|---|---|
| Super-classes |
obo:SO_0001791c obo:SO_0001968c |
| Sub-classes |
obo:SO_0001818c obo:SO_0001590c obo:SO_0001819c obo:SO_0001582c |
| URI | http://purl.obolibrary.org/obo/SO_0001582 |
|---|---|
| Description |
This is being used to annotate changes to the first codon of a transcript, when the first annotated codon is not to methionine. A variant is predicted to change the first amino acid of a translation irrespective of the fact that the underlying codon is an AUG. As such for transcripts with an incomplete CDS (sequence does not start with an AUG), it is still called. |
| Super-classes |
obo:SO_0001580c |
| Sub-classes |
obo:SO_0002019c obo:SO_0002012c |
| URI | http://purl.obolibrary.org/obo/SO_0001583 |
|---|---|
| Description |
EBI term: Non-synonymous SNPs. SNPs that are located in the coding sequence and result in an amino acid change in the encoded peptide sequence. A change that causes a non_synonymous_codon can be more than 3 bases - for example 4 base substitution. |
| Super-classes |
obo:SO_0001992c |
| Sub-classes |
obo:SO_0001585c obo:SO_0001586c |
| URI | http://purl.obolibrary.org/obo/SO_0001585 |
|---|---|
| Super-classes |
obo:SO_0001583c |
| URI | http://purl.obolibrary.org/obo/SO_0001586 |
|---|---|
| Super-classes |
obo:SO_0001583c |
| Sub-classes |
obo:SO_0002008c |
| URI | http://purl.obolibrary.org/obo/SO_0001587 |
|---|---|
| Description |
EBI term: Stop gained - In coding sequence, resulting in the gain of a stop codon (i.e. leading to a shortened peptide sequence). |
| Super-classes |
obo:SO_0001992c obo:SO_0001906c |
| Sub-classes |
obo:SO_0002321c obo:SO_0002322c |
| URI | http://purl.obolibrary.org/obo/SO_0001589 |
|---|---|
| Description |
EBI term:Frameshift variations - In coding sequence, resulting in a frameshift. |
| Super-classes |
obo:SO_0001818c |
| Sub-classes |
obo:SO_0001591c obo:SO_0001909c obo:SO_0001592c obo:SO_0001910c obo:SO_0001593c obo:SO_0002323c obo:SO_0001594c obo:SO_0001595c obo:SO_0002324c |
| URI | http://purl.obolibrary.org/obo/SO_0001590 |
|---|---|
| Description |
The terminal codon may be the terminator, or in an incomplete transcript the last available codon. |
| Super-classes |
obo:SO_0001580c |
| Sub-classes |
obo:SO_0001626c obo:SO_0001567c obo:SO_0001578c |
| URI | http://purl.obolibrary.org/obo/SO_0001591 |
|---|---|
| Super-classes |
obo:SO_0001589c |
| URI | http://purl.obolibrary.org/obo/SO_0001592 |
|---|---|
| Super-classes |
obo:SO_0001589c |
| URI | http://purl.obolibrary.org/obo/SO_0001593 |
|---|---|
| Super-classes |
obo:SO_0001589c |
| URI | http://purl.obolibrary.org/obo/SO_0001594 |
|---|---|
| Super-classes |
obo:SO_0001589c |
| URI | http://purl.obolibrary.org/obo/SO_0001595 |
|---|---|
| Super-classes |
obo:SO_0001589c |
| URI | http://purl.obolibrary.org/obo/SO_0001596 |
|---|---|
| Super-classes |
obo:SO_0001576c |
| Sub-classes |
obo:SO_0001597c |
| URI | http://purl.obolibrary.org/obo/SO_0001597 |
|---|---|
| Super-classes |
obo:SO_0001596c |
| URI | http://purl.obolibrary.org/obo/SO_0001598 |
|---|---|
| Super-classes |
obo:SO_0001564c |
| Sub-classes |
obo:SO_0001603c |
| URI | http://purl.obolibrary.org/obo/SO_0001599 |
|---|---|
| Super-classes |
obo:SO_0001539c |
| Sub-classes |
obo:SO_0002093c obo:SO_0001601c obo:SO_0001600c |
| URI | http://purl.obolibrary.org/obo/SO_0001600 |
|---|---|
| Super-classes |
obo:SO_0001599c |
| URI | http://purl.obolibrary.org/obo/SO_0001601 |
|---|---|
| Super-classes |
obo:SO_0001599c |
| URI | http://purl.obolibrary.org/obo/SO_0001602 |
|---|---|
| Super-classes |
obo:SO_0001539c |
| URI | http://purl.obolibrary.org/obo/SO_0001603 |
|---|---|
| Super-classes |
obo:SO_0001598c |
| Sub-classes |
obo:SO_0001617c obo:SO_0001604c obo:SO_0001606c obo:SO_0001609c obo:SO_0001605c obo:SO_0001616c |
| URI | http://purl.obolibrary.org/obo/SO_0001604 |
|---|---|
| Super-classes |
obo:SO_0001603c |
| URI | http://purl.obolibrary.org/obo/SO_0001605 |
|---|---|
| Super-classes |
obo:SO_0001603c |
| URI | http://purl.obolibrary.org/obo/SO_0001606 |
|---|---|
| Super-classes |
obo:SO_0001603c |
| Sub-classes |
obo:SO_0001608c obo:SO_0001607c |
| URI | http://purl.obolibrary.org/obo/SO_0001607 |
|---|---|
| Super-classes |
obo:SO_0001606c |
| URI | http://purl.obolibrary.org/obo/SO_0001608 |
|---|---|
| Super-classes |
obo:SO_0001606c |
| URI | http://purl.obolibrary.org/obo/SO_0001609 |
|---|---|
| Super-classes |
obo:SO_0001603c |
| Sub-classes |
obo:SO_0001611c obo:SO_0001610c |
| URI | http://purl.obolibrary.org/obo/SO_0001610 |
|---|---|
| Super-classes |
obo:SO_0001609c |
| Restrictions |
so:derives_fromop some obo:SO_0002229c |
| Sub-classes |
obo:SO_0001613c obo:SO_0001612c |
| URI | http://purl.obolibrary.org/obo/SO_0001611 |
|---|---|
| Super-classes |
obo:SO_0001609c |
| Restrictions |
so:derives_fromop some obo:SO_0002228c |
| Sub-classes |
obo:SO_0001615c obo:SO_0001614c |
| URI | http://purl.obolibrary.org/obo/SO_0001612 |
|---|---|
| Super-classes |
obo:SO_0001610c |
| URI | http://purl.obolibrary.org/obo/SO_0001613 |
|---|---|
| Super-classes |
obo:SO_0001610c |
| URI | http://purl.obolibrary.org/obo/SO_0001614 |
|---|---|
| Super-classes |
obo:SO_0001611c |
| URI | http://purl.obolibrary.org/obo/SO_0001615 |
|---|---|
| Super-classes |
obo:SO_0001611c |
| URI | http://purl.obolibrary.org/obo/SO_0001616 |
|---|---|
| Super-classes |
obo:SO_0001603c |
| URI | http://purl.obolibrary.org/obo/SO_0001617 |
|---|---|
| Super-classes |
obo:SO_0001603c |
| URI | http://purl.obolibrary.org/obo/SO_0001618 |
|---|---|
| Super-classes |
obo:SO_0001560c |
| URI | http://purl.obolibrary.org/obo/SO_0001619 |
|---|---|
| Description |
Within non-coding gene - Located within a gene that does not code for a protein. |
| Super-classes |
obo:SO_0001576c |
| Sub-classes |
obo:SO_0001792c obo:SO_0002088c obo:SO_0001620c obo:SO_0001970c |
| URI | http://purl.obolibrary.org/obo/SO_0001620 |
|---|---|
| Description |
EBI term: Within mature miRNA - Located within a microRNA. |
| Super-classes |
obo:SO_0001619c |
| URI | http://purl.obolibrary.org/obo/SO_0001621 |
|---|---|
| Super-classes |
obo:SO_0001576c |
| URI | http://purl.obolibrary.org/obo/SO_0001622 |
|---|---|
| Super-classes |
obo:SO_0001791c obo:SO_0001968c |
| Sub-classes |
obo:SO_0001623c obo:SO_0001624c |
| URI | http://purl.obolibrary.org/obo/SO_0001623 |
|---|---|
| Description |
EBI term: 5prime UTR variations - In 5prime UTR (untranslated region). |
| Super-classes |
obo:SO_0001622c |
| Sub-classes |
obo:SO_0002091c obo:SO_0002013c obo:SO_0002014c obo:SO_0002092c obo:SO_0001983c |
| URI | http://purl.obolibrary.org/obo/SO_0001624 |
|---|---|
| Description |
EBI term 3prime UTR variations - In 3prime UTR. |
| Super-classes |
obo:SO_0001622c |
| Sub-classes |
obo:SO_0002015c obo:SO_0002016c obo:SO_0002089c obo:SO_0002090c |
| URI | http://purl.obolibrary.org/obo/SO_0001626 |
|---|---|
| Description |
EBI term: Partial codon - Located within the final, incomplete codon of a transcript with a shortened coding sequence where the end is unknown. |
| Super-classes |
obo:SO_0001590c obo:SO_0001650c |
| URI | http://purl.obolibrary.org/obo/SO_0001627 |
|---|---|
| Description |
EBI term: Intronic variations - In intron. |
| Super-classes |
obo:SO_0001576c |
| Sub-classes |
obo:SO_0001629c obo:SO_0002018c obo:SO_0001970c obo:SO_0001969c |
| URI | http://purl.obolibrary.org/obo/SO_0001628 |
|---|---|
| Description |
EBI term Intergenic variations - More than 5 kb either upstream or downstream of a transcript. |
| Super-classes |
obo:SO_0001878c |
| Sub-classes |
obo:SO_0001987c obo:SO_0001986c obo:SO_0002017c obo:SO_0001631c obo:SO_0002074c obo:SO_0001632c |
| URI | http://purl.obolibrary.org/obo/SO_0001629 |
|---|---|
| Description |
EBI term - essential splice site - In the first 2 or the last 2 base pairs of an intron. The 5th base is on the donor (5') side of the intron. Updated to b in line with Cancer Genome Project at the Sanger. |
| Super-classes |
obo:SO_0001627c obo:SO_0001568c |
| Sub-classes |
obo:SO_0001574c obo:SO_0001787c obo:SO_0001575c |
| URI | http://purl.obolibrary.org/obo/SO_0001630 |
|---|---|
| Description |
EBI term: splice site - 1-3 bps into an exon or 3-8 bps into an intron. |
| Super-classes |
obo:SO_0001568c |
| Sub-classes |
obo:SO_0002088c obo:SO_0002084c obo:SO_0002170c |
| URI | http://purl.obolibrary.org/obo/SO_0001631 |
|---|---|
| Description |
Different groups annotate up and downstream to different lengths. The subtypes are specific and are backed up with cross references. |
| Super-classes |
obo:SO_0001628c |
| Sub-classes |
obo:SO_0001636c obo:SO_0001635c |
| URI | http://purl.obolibrary.org/obo/SO_0001632 |
|---|---|
| Description |
Different groups annotate up and downstream to different lengths. The subtypes are specific and are backed up with cross references. |
| Super-classes |
obo:SO_0001628c |
| Sub-classes |
obo:SO_0002083c obo:SO_0001634c obo:SO_0001633c |
| URI | http://purl.obolibrary.org/obo/SO_0001633 |
|---|---|
| Description |
EBI term Downstream variations - Within 5 kb downstream of the 3prime end of a transcript. |
| Super-classes |
obo:SO_0001632c |
| URI | http://purl.obolibrary.org/obo/SO_0001634 |
|---|---|
| Super-classes |
obo:SO_0001632c |
| URI | http://purl.obolibrary.org/obo/SO_0001635 |
|---|---|
| Description |
EBI term Upstream variations - Within 5 kb upstream of the 5prime end of a transcript. |
| Super-classes |
obo:SO_0001631c |
| URI | http://purl.obolibrary.org/obo/SO_0001636 |
|---|---|
| Super-classes |
obo:SO_0001631c |
| URI | http://purl.obolibrary.org/obo/SO_0001637 |
|---|---|
| Super-classes |
obo:SO_0001263c |
| Sub-classes |
obo:SO_0002336c obo:SO_0002242c obo:SO_0002243c obo:SO_0002240c obo:SO_0002239c obo:SO_0002241c obo:SO_0002236c obo:SO_0002238c obo:SO_0002237c |
| URI | http://purl.obolibrary.org/obo/SO_0001638 |
|---|---|
| Description |
Moved from ncRNA_gene to sncRNA_gene 27 April 2021 to be more consistent with the organization of the ncRNA branch of SO. Requested by FlyBase, moved by Dave Sant. See GitHub Issue #514. |
| Super-classes |
obo:SO_0002342c |
| URI | http://purl.obolibrary.org/obo/SO_0001639 |
|---|---|
| Super-classes |
obo:SO_0001263c |
| URI | http://purl.obolibrary.org/obo/SO_0001640 |
|---|---|
| Super-classes |
obo:SO_0001263c |
| URI | http://purl.obolibrary.org/obo/SO_0001641 |
|---|---|
| Super-classes |
obo:SO_0002127c |
| URI | http://purl.obolibrary.org/obo/SO_0001642 |
|---|---|
| Description |
Mathematically defined repeat regions are determined without regard to the biological origin of the repetitive region. The repeat units of a MDR are the overlapping oligomers of size k that were used to for the query. Tools that can annotate mathematically defined repeats include Tallymer (Kurtz et al 2008, BMC Genomics: 517) and RePS (Wang et al, Genome Res 12(5): 824-831.). |
| Super-classes |
obo:SO_0001410c |
| URI | http://purl.obolibrary.org/obo/SO_0001643 |
|---|---|
| Super-classes |
obo:SO_0001263c |
| URI | http://purl.obolibrary.org/obo/SO_0001644 |
|---|---|
| Super-classes |
obo:SO_0000804c obo:SO_0000440c |
| Restrictions |
so:has_partop some obo:SO_0000853c so:has_qualityop some obo:SO_0000783c |
| URI | http://purl.obolibrary.org/obo/SO_0001645 |
|---|---|
| Super-classes |
obo:SO_0001411c |
| Sub-classes |
obo:SO_0001646c obo:SO_0001500c obo:SO_0002232c |
| URI | http://purl.obolibrary.org/obo/SO_0001646 |
|---|---|
| Super-classes |
obo:SO_0001645c |
| URI | http://purl.obolibrary.org/obo/SO_0001647 |
|---|---|
| Super-classes |
obo:SO_0000139c |
| URI | http://purl.obolibrary.org/obo/SO_0001648 |
|---|---|
| Super-classes |
obo:SO_0000101c |
| URI | http://purl.obolibrary.org/obo/SO_0001649 |
|---|---|
| Super-classes |
obo:SO_0000657c |
| Sub-classes |
obo:SO_0001658c |
| URI | http://purl.obolibrary.org/obo/SO_0001650 |
|---|---|
| Super-classes |
obo:SO_0001818c |
| Sub-classes |
obo:SO_0001820c obo:SO_0001626c obo:SO_0001992c |
| URI | http://purl.obolibrary.org/obo/SO_0001653 |
|---|---|
| Super-classes |
obo:SO_0000235c |
| URI | http://purl.obolibrary.org/obo/SO_0001654 |
|---|---|
| Super-classes |
obo:SO_0000410c |
| Sub-classes |
obo:SO_0001460c obo:SO_0001383c obo:SO_0000235c obo:SO_0001461c obo:SO_0000059c |
| URI | http://purl.obolibrary.org/obo/SO_0001655 |
|---|---|
| Description |
See GO:0000166 : nucleotide binding. |
| Super-classes |
obo:SO_0000409c |
| Sub-classes |
obo:SO_0001429c obo:SO_0000934c obo:SO_0005850c |
| URI | http://purl.obolibrary.org/obo/SO_0001656 |
|---|---|
| Description |
See GO:0046872 : metal ion binding. |
| Super-classes |
obo:SO_0000409c |
| Sub-classes |
obo:SO_0001092c |
| URI | http://purl.obolibrary.org/obo/SO_0001657 |
|---|---|
| Super-classes |
obo:SO_0000409c |
| Sub-classes |
obo:SO_0001105c |
| URI | http://purl.obolibrary.org/obo/SO_0001658 |
|---|---|
| Description |
Tracker ID: 3052459. |
| Super-classes |
obo:SO_0001649c |
| URI | http://purl.obolibrary.org/obo/SO_0001659 |
|---|---|
| Description |
Mmoved from is_a: SO:0001055 transcriptional_cis_regulatory_region as per request from GREEKC initiative in August 2020. |
| Super-classes |
obo:SO_0000713c |
| Restrictions |
so:overlapsop some obo:SO_0000235c so:part_ofop some obo:SO_0000167c |
| Sub-classes |
obo:SO_0001861c obo:SO_0001855c obo:SO_0001168c obo:SO_0002006c obo:SO_0001165c obo:SO_0002045c obo:SO_0001857c obo:SO_0001678c obo:SO_0001161c obo:SO_0001974c obo:SO_0001844c obo:SO_0000173c obo:SO_0002216c obo:SO_0001849c obo:SO_0002044c obo:SO_0001858c obo:SO_0001859c obo:SO_0002156c obo:SO_0001865c obo:SO_0001856c obo:SO_0001167c obo:SO_0001850c obo:SO_0001845c obo:SO_0001852c obo:SO_0001871c obo:SO_0001160c obo:SO_0001847c obo:SO_0001842c obo:SO_0001843c obo:SO_0001846c obo:SO_0002309c obo:SO_0001164c obo:SO_0001159c obo:SO_0001157c obo:SO_0001839c |
| URI | http://purl.obolibrary.org/obo/SO_0001660 |
|---|---|
| Super-classes |
obo:SO_0002309c |
| Restrictions |
so:part_ofop some obo:SO_0002221c |
| Sub-classes |
obo:SO_0001848c obo:SO_0000619c obo:SO_0001162c obo:SO_0000016c obo:SO_0000015c obo:SO_0001901c obo:SO_0000174c obo:SO_0001663c obo:SO_0001664c obo:SO_0000620c obo:SO_0001959c obo:SO_0001677c obo:SO_0000014c obo:SO_0000622c |
| URI | http://purl.obolibrary.org/obo/SO_0001661 |
|---|---|
| Super-classes |
obo:SO_0000174c |
| Restrictions |
so:part_ofop some obo:SO_0001669c |
| URI | http://purl.obolibrary.org/obo/SO_0001662 |
|---|---|
| Super-classes |
obo:SO_0000174c |
| Restrictions |
so:part_ofop some obo:SO_0000171c |
| URI | http://purl.obolibrary.org/obo/SO_0001663 |
|---|---|
| Super-classes |
obo:SO_0001660c |
| Restrictions |
so:part_ofop some obo:SO_0001669c |
| URI | http://purl.obolibrary.org/obo/SO_0001664 |
|---|---|
| Super-classes |
obo:SO_0001660c |
| Restrictions |
so:part_ofop some obo:SO_0001669c |
| URI | http://purl.obolibrary.org/obo/SO_0001665 |
|---|---|
| Super-classes |
obo:SO_0000713c |
| Restrictions |
so:part_ofop some obo:SO_0001664c |
| URI | http://purl.obolibrary.org/obo/SO_0001666 |
|---|---|
| Super-classes |
obo:SO_0000713c |
| Restrictions |
so:part_ofop some obo:SO_0001664c |
| URI | http://purl.obolibrary.org/obo/SO_0001667 |
|---|---|
| Super-classes |
obo:SO_0000713c |
| Restrictions |
so:part_ofop some obo:SO_0001664c |
| URI | http://purl.obolibrary.org/obo/SO_0001668 |
|---|---|
| Super-classes |
obo:SO_0001678c |
| URI | http://purl.obolibrary.org/obo/SO_0001669 |
|---|---|
| Super-classes |
obo:SO_0000170c |
| URI | http://purl.obolibrary.org/obo/SO_0001670 |
|---|---|
| Super-classes |
obo:SO_0001678c |
| URI | http://purl.obolibrary.org/obo/SO_0001671 |
|---|---|
| Super-classes |
obo:SO_0000613c |
| URI | http://purl.obolibrary.org/obo/SO_0001672 |
|---|---|
| Super-classes |
obo:SO_0000613c |
| URI | http://purl.obolibrary.org/obo/SO_0001673 |
|---|---|
| Super-classes |
obo:SO_0000713c |
| Restrictions |
so:part_ofop some obo:SO_0001672c |
| URI | http://purl.obolibrary.org/obo/SO_0001674 |
|---|---|
| Super-classes |
obo:SO_0000713c |
| Restrictions |
so:part_ofop some obo:SO_0001672c |
| URI | http://purl.obolibrary.org/obo/SO_0001675 |
|---|---|
| Description |
The A box can be found in the promoters of type 1 and type 2 (pol III) so sub-typing here allows the part of relationship of the subtypes to remain true. |
| Super-classes |
obo:SO_0000619c |
| Restrictions |
so:part_ofop some obo:SO_0000617c |
| URI | http://purl.obolibrary.org/obo/SO_0001676 |
|---|---|
| Description |
The A box can be found in the promoters of type 1 and type 2 (pol III) so sub-typing here allows the part of relationship of the subtypes to remain true. |
| Super-classes |
obo:SO_0000619c |
| Restrictions |
so:part_ofop some obo:SO_0000618c |
| URI | http://purl.obolibrary.org/obo/SO_0001677 |
|---|---|
| Super-classes |
obo:SO_0001660c |
| Restrictions |
so:part_ofop some obo:SO_0000617c |
| URI | http://purl.obolibrary.org/obo/SO_0001678 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| Sub-classes |
obo:SO_0001670c obo:SO_0001980c obo:SO_0001668c obo:SO_0001981c obo:SO_0001982c |
| URI | http://purl.obolibrary.org/obo/SO_0001679 |
|---|---|
| Description |
Obsoleted by David Sant on 11 Feb 2021 when it was merged with transcriptional_cis_regulatory_region (SO:0001055) to reduce redundancy and be consistent with Gene Ontology. See GitHub Issue #527. |
| URI | http://purl.obolibrary.org/obo/SO_0001680 |
|---|---|
| Super-classes |
obo:SO_0005836c |
| Sub-classes |
obo:SO_0000140c |
| URI | http://purl.obolibrary.org/obo/SO_0001681 |
|---|---|
| Super-classes |
obo:SO_0005836c |
| Sub-classes |
obo:SO_0002059c |
| URI | http://purl.obolibrary.org/obo/SO_0001682 |
|---|---|
| Super-classes |
obo:SO_0005836c |
| URI | http://purl.obolibrary.org/obo/SO_0001683 |
|---|---|
| Super-classes |
obo:SO_0001411c |
| Sub-classes |
obo:SO_0000714c |
| URI | http://purl.obolibrary.org/obo/SO_0001684 |
|---|---|
| Super-classes |
obo:SO_0000733c |
| Sub-classes |
obo:SO_0001686c obo:SO_0001685c |
| URI | http://purl.obolibrary.org/obo/SO_0001685 |
|---|---|
| Super-classes |
obo:SO_0001684c |
| URI | http://purl.obolibrary.org/obo/SO_0001686 |
|---|---|
| Super-classes |
obo:SO_0001684c |
| URI | http://purl.obolibrary.org/obo/SO_0001687 |
|---|---|
| Super-classes |
obo:SO_0001954c |
| Sub-classes |
obo:SO_0001692c obo:SO_0001691c |
| URI | http://purl.obolibrary.org/obo/SO_0001688 |
|---|---|
| Super-classes |
obo:SO_0002204c |
| Sub-classes |
obo:SO_0001694c obo:SO_0001693c |
| URI | http://purl.obolibrary.org/obo/SO_0001689 |
|---|---|
| Super-classes |
obo:SO_0001694c |
| Restrictions |
so:part_ofop some obo:SO_0001692c |
| URI | http://purl.obolibrary.org/obo/SO_0001690 |
|---|---|
| Super-classes |
obo:SO_0001694c |
| Restrictions |
so:part_ofop some obo:SO_0001692c |
| URI | http://purl.obolibrary.org/obo/SO_0001691 |
|---|---|
| Super-classes |
obo:SO_0001687c |
| URI | http://purl.obolibrary.org/obo/SO_0001692 |
|---|---|
| Super-classes |
obo:SO_0001687c |
| Sub-classes |
obo:SO_0001976c obo:SO_0001975c |
| URI | http://purl.obolibrary.org/obo/SO_0001693 |
|---|---|
| Super-classes |
obo:SO_0001688c |
| Restrictions |
so:part_ofop some obo:SO_0001691c |
| URI | http://purl.obolibrary.org/obo/SO_0001694 |
|---|---|
| Super-classes |
obo:SO_0001688c |
| Sub-classes |
obo:SO_0001690c obo:SO_0001689c |
| URI | http://purl.obolibrary.org/obo/SO_0001695 |
|---|---|
| Super-classes |
obo:SO_0001954c |
| Restrictions |
so:part_ofop some obo:SO_0001692c |
| Sub-classes |
obo:SO_0001932c obo:SO_0001933c |
| URI | http://purl.obolibrary.org/obo/SO_0001696 |
|---|---|
| Super-classes |
obo:SO_0001410c |
| Sub-classes |
obo:SO_0001697c |
| URI | http://purl.obolibrary.org/obo/SO_0001697 |
|---|---|
| Super-classes |
obo:SO_0001696c |
| Restrictions |
so:containsop some obo:SO_0000410c |
| URI | http://purl.obolibrary.org/obo/SO_0001698 |
|---|---|
| Super-classes |
obo:SO_0000112c |
| URI | http://purl.obolibrary.org/obo/SO_0001699 |
|---|---|
| Super-classes |
obo:SO_0000112c |
| URI | http://purl.obolibrary.org/obo/SO_0001700 |
|---|---|
| Super-classes |
obo:SO_0001720c obo:SO_0001089c |
| Restrictions |
so:has_qualityop some obo:SO_0000133c |
| Sub-classes |
obo:SO_0001737c obo:SO_0001702c obo:SO_0001716c obo:SO_0001701c |
| URI | http://purl.obolibrary.org/obo/SO_0001701 |
|---|---|
| Super-classes |
obo:SO_0001700c |
| Sub-classes |
obo:SO_0001948c obo:SO_0001736c obo:SO_0001713c obo:SO_0001950c obo:SO_0001732c obo:SO_0001949c obo:SO_0001947c obo:SO_0001734c obo:SO_0001935c obo:SO_0001735c obo:SO_0001714c obo:SO_0001733c obo:SO_0001951c |
| URI | http://purl.obolibrary.org/obo/SO_0001702 |
|---|---|
| Super-classes |
obo:SO_0001700c |
| Sub-classes |
obo:SO_0001972c obo:SO_0001973c obo:SO_0002142c obo:SO_0002143c |
| URI | http://purl.obolibrary.org/obo/SO_0001703 |
|---|---|
| Super-classes |
obo:SO_0001973c |
| URI | http://purl.obolibrary.org/obo/SO_0001704 |
|---|---|
| Super-classes |
obo:SO_0001973c |
| URI | http://purl.obolibrary.org/obo/SO_0001705 |
|---|---|
| Super-classes |
obo:SO_0001734c |
| URI | http://purl.obolibrary.org/obo/SO_0001706 |
|---|---|
| Super-classes |
obo:SO_0001734c |
| URI | http://purl.obolibrary.org/obo/SO_0001707 |
|---|---|
| Super-classes |
obo:SO_0001736c |
| URI | http://purl.obolibrary.org/obo/SO_0001708 |
|---|---|
| Super-classes |
obo:SO_0001732c |
| URI | http://purl.obolibrary.org/obo/SO_0001709 |
|---|---|
| Super-classes |
obo:SO_0001732c |
| URI | http://purl.obolibrary.org/obo/SO_0001710 |
|---|---|
| Super-classes |
obo:SO_0001735c |
| URI | http://purl.obolibrary.org/obo/SO_0001711 |
|---|---|
| Super-classes |
obo:SO_0001735c |
| URI | http://purl.obolibrary.org/obo/SO_0001712 |
|---|---|
| Super-classes |
obo:SO_0001735c |
| URI | http://purl.obolibrary.org/obo/SO_0001713 |
|---|---|
| Super-classes |
obo:SO_0001701c |
| URI | http://purl.obolibrary.org/obo/SO_0001714 |
|---|---|
| Super-classes |
obo:SO_0001701c |
| URI | http://purl.obolibrary.org/obo/SO_0001715 |
|---|---|
| Description |
Term requested via tracker (2981725) by Alan Ruttenberg, April 2010. It has been described as both an enhancer and a promoter, so the parent is the more general term. Moved from is_a SO:0001055 transcriptional_cis_regulatory_region to SO:0000235 TF_binding_site after Colin Logie pointed out that this is a consensus sequence where transcription factors bind, GREEKC Jan 21, 2021. |
| Super-classes |
obo:SO_0000235c |
| URI | http://purl.obolibrary.org/obo/SO_0001716 |
|---|---|
| Super-classes |
obo:SO_0001700c |
| Sub-classes |
obo:SO_0001717c |
| URI | http://purl.obolibrary.org/obo/SO_0001717 |
|---|---|
| Super-classes |
obo:SO_0001716c |
| URI | http://purl.obolibrary.org/obo/SO_0001718 |
|---|---|
| Super-classes |
obo:SO_0001973c |
| URI | http://purl.obolibrary.org/obo/SO_0001719 |
|---|---|
| Super-classes |
obo:SO_0001973c |
| URI | http://purl.obolibrary.org/obo/SO_0001720 |
|---|---|
| Description |
Moved from is_a biological_region (SO:0001411) to is_a regulatory_region (SO:0005836) on 11 Feb 2021. GREEKC members pointed out that this would be a more appropriate location. See GitHub Issue #530. 11 Feb 2021 updated definition along with addition of epigenomically_modified_region (SO:0002332). Epigenetically modified region is now not inherited while epigenomically modified region is not annotated as inherited. See GitHub Issue #532 and issue #534. |
| Super-classes |
obo:SO_0005836c |
| Restrictions |
so:has_qualityop some obo:SO_0000133c |
| Sub-classes |
obo:SO_0002332c obo:SO_0000305c obo:SO_0001700c obo:SO_0000898c obo:SO_0002191c |
| URI | http://purl.obolibrary.org/obo/SO_0001722 |
|---|---|
| Super-classes |
obo:SO_0001733c |
| URI | http://purl.obolibrary.org/obo/SO_0001723 |
|---|---|
| Super-classes |
obo:SO_0001733c |
| URI | http://purl.obolibrary.org/obo/SO_0001724 |
|---|---|
| Super-classes |
obo:SO_0001733c |
| URI | http://purl.obolibrary.org/obo/SO_0001725 |
|---|---|
| Super-classes |
obo:SO_0001734c |
| URI | http://purl.obolibrary.org/obo/SO_0001726 |
|---|---|
| Super-classes |
obo:SO_0001732c |
| URI | http://purl.obolibrary.org/obo/SO_0001727 |
|---|---|
| Super-classes |
obo:SO_0001736c |
| URI | http://purl.obolibrary.org/obo/SO_0001728 |
|---|---|
| Super-classes |
obo:SO_0001736c |
| URI | http://purl.obolibrary.org/obo/SO_0001729 |
|---|---|
| Super-classes |
obo:SO_0001972c |
| URI | http://purl.obolibrary.org/obo/SO_0001730 |
|---|---|
| Super-classes |
obo:SO_0001972c |
| URI | http://purl.obolibrary.org/obo/SO_0001731 |
|---|---|
| Super-classes |
obo:SO_0001972c |
| URI | http://purl.obolibrary.org/obo/SO_0001732 |
|---|---|
| Super-classes |
obo:SO_0001701c |
| Sub-classes |
obo:SO_0001709c obo:SO_0001726c obo:SO_0001708c |
| URI | http://purl.obolibrary.org/obo/SO_0001733 |
|---|---|
| Super-classes |
obo:SO_0001701c |
| Sub-classes |
obo:SO_0001722c obo:SO_0001724c obo:SO_0001723c |
| URI | http://purl.obolibrary.org/obo/SO_0001734 |
|---|---|
| Super-classes |
obo:SO_0001701c |
| Sub-classes |
obo:SO_0001705c obo:SO_0001706c obo:SO_0001725c |
| URI | http://purl.obolibrary.org/obo/SO_0001735 |
|---|---|
| Super-classes |
obo:SO_0001701c |
| Sub-classes |
obo:SO_0001712c obo:SO_0001711c obo:SO_0001710c |
| URI | http://purl.obolibrary.org/obo/SO_0001736 |
|---|---|
| Super-classes |
obo:SO_0001701c |
| Sub-classes |
obo:SO_0001707c obo:SO_0001728c obo:SO_0001727c |
| URI | http://purl.obolibrary.org/obo/SO_0001737 |
|---|---|
| Super-classes |
obo:SO_0001700c |
| Sub-classes |
obo:SO_0001738c |
| URI | http://purl.obolibrary.org/obo/SO_0001738 |
|---|---|
| Super-classes |
obo:SO_0001737c |
| URI | http://purl.obolibrary.org/obo/SO_0001739 |
|---|---|
| Description |
Requested by flybase, Dec 2010. |
| Super-classes |
obo:SO_0000704c |
| Restrictions |
so:containsop some obo:SO_0000680c |
| Sub-classes |
obo:SO_0001740c |
| URI | http://purl.obolibrary.org/obo/SO_0001740 |
|---|---|
| Description |
Requested by flybase, Dec 2010. |
| Super-classes |
obo:SO_0001739c |
| URI | http://purl.obolibrary.org/obo/SO_0001741 |
|---|---|
| Super-classes |
obo:SO_3000000c |
| URI | http://purl.obolibrary.org/obo/SO_0001742 |
|---|---|
| Super-classes |
obo:SO_0001019c |
| URI | http://purl.obolibrary.org/obo/SO_0001743 |
|---|---|
| Super-classes |
obo:SO_0001019c |
| URI | http://purl.obolibrary.org/obo/SO_0001744 |
|---|---|
| Super-classes |
obo:SO_0001059c |
| Sub-classes |
obo:SO_0001746c obo:SO_0001745c |
| URI | http://purl.obolibrary.org/obo/SO_0001745 |
|---|---|
| Super-classes |
obo:SO_0001744c |
| URI | http://purl.obolibrary.org/obo/SO_0001746 |
|---|---|
| Super-classes |
obo:SO_0001744c |
| URI | http://purl.obolibrary.org/obo/SO_0001747 |
|---|---|
| Description |
Requested by John Calley 3125900. |
| Super-classes |
obo:SO_0001411c |
| URI | http://purl.obolibrary.org/obo/SO_0001748 |
|---|---|
| Super-classes |
obo:SO_0000709c |
| URI | http://purl.obolibrary.org/obo/SO_0001749 |
|---|---|
| Super-classes |
obo:SO_0000709c |
| URI | http://purl.obolibrary.org/obo/SO_0001750 |
|---|---|
| Super-classes |
obo:SO_0000709c |
| URI | http://purl.obolibrary.org/obo/SO_0001751 |
|---|---|
| Super-classes |
obo:SO_0000709c |
| URI | http://purl.obolibrary.org/obo/SO_0001752 |
|---|---|
| Super-classes |
obo:SO_0000709c |
| URI | http://purl.obolibrary.org/obo/SO_0001753 |
|---|---|
| Super-classes |
obo:SO_0000709c |
| URI | http://purl.obolibrary.org/obo/SO_0001754 |
|---|---|
| Super-classes |
obo:SO_0000709c |
| URI | http://purl.obolibrary.org/obo/SO_0001755 |
|---|---|
| Super-classes |
obo:SO_0000709c |
| URI | http://purl.obolibrary.org/obo/SO_0001756 |
|---|---|
| Super-classes |
obo:SO_0000709c |
| URI | http://purl.obolibrary.org/obo/SO_0001757 |
|---|---|
| Super-classes |
obo:SO_0000709c |
| URI | http://purl.obolibrary.org/obo/SO_0001758 |
|---|---|
| Super-classes |
obo:SO_0001760c |
| URI | http://purl.obolibrary.org/obo/SO_0001759 |
|---|---|
| Description |
This is different from a non processed pseudogene because the gene was not duplicated. An example is the L-gulono-lactone oxidase pseudogene in primates. |
| Super-classes |
obo:SO_0001760c |
| Sub-classes |
obo:SO_0002108c obo:SO_0002189c |
| URI | http://purl.obolibrary.org/obo/SO_0001760 |
|---|---|
| Super-classes |
obo:SO_0000336c |
| Sub-classes |
obo:SO_0002107c obo:SO_0001044c obo:SO_0000044c obo:SO_0001434c obo:SO_0002106c obo:SO_0001759c obo:SO_0001758c |
| URI | http://purl.obolibrary.org/obo/SO_0001761 |
|---|---|
| Super-classes |
obo:SO_0000400c |
| Sub-classes |
obo:SO_0001769c obo:SO_0001814c obo:SO_0001763c obo:SO_0001762c |
| URI | http://purl.obolibrary.org/obo/SO_0001762 |
|---|---|
| Super-classes |
obo:SO_0001761c |
| Sub-classes |
obo:SO_0001779c obo:SO_0001776c obo:SO_0001777c obo:SO_0001781c obo:SO_0001780c obo:SO_0001778c obo:SO_0001775c |
| URI | http://purl.obolibrary.org/obo/SO_0001763 |
|---|---|
| Super-classes |
obo:SO_0001761c |
| Sub-classes |
obo:SO_0001764c obo:SO_0001766c obo:SO_0001765c obo:SO_0001767c obo:SO_0001768c obo:SO_0002119c |
| URI | http://purl.obolibrary.org/obo/SO_0001764 |
|---|---|
| Super-classes |
obo:SO_0001763c |
| URI | http://purl.obolibrary.org/obo/SO_0001765 |
|---|---|
| Super-classes |
obo:SO_0001763c |
| URI | http://purl.obolibrary.org/obo/SO_0001766 |
|---|---|
| Super-classes |
obo:SO_0001763c |
| URI | http://purl.obolibrary.org/obo/SO_0001767 |
|---|---|
| Super-classes |
obo:SO_0001763c |
| URI | http://purl.obolibrary.org/obo/SO_0001768 |
|---|---|
| Super-classes |
obo:SO_0001763c |
| URI | http://purl.obolibrary.org/obo/SO_0001769 |
|---|---|
| Super-classes |
obo:SO_0001761c |
| Sub-classes |
obo:SO_0001770c obo:SO_0001771c obo:SO_0001772c obo:SO_0001774c |
| URI | http://purl.obolibrary.org/obo/SO_0001770 |
|---|---|
| Super-classes |
obo:SO_0001769c |
| URI | http://purl.obolibrary.org/obo/SO_0001771 |
|---|---|
| Super-classes |
obo:SO_0001769c |
| URI | http://purl.obolibrary.org/obo/SO_0001772 |
|---|---|
| Super-classes |
obo:SO_0001769c |
| URI | http://purl.obolibrary.org/obo/SO_0001773 |
|---|---|
| Super-classes |
obo:SO_0002218c |
| URI | http://purl.obolibrary.org/obo/SO_0001774 |
|---|---|
| Super-classes |
obo:SO_0001769c |
| URI | http://purl.obolibrary.org/obo/SO_0001775 |
|---|---|
| Super-classes |
obo:SO_0001762c |
| URI | http://purl.obolibrary.org/obo/SO_0001776 |
|---|---|
| Super-classes |
obo:SO_0001762c |
| URI | http://purl.obolibrary.org/obo/SO_0001777 |
|---|---|
| Super-classes |
obo:SO_0001762c |
| URI | http://purl.obolibrary.org/obo/SO_0001778 |
|---|---|
| Super-classes |
obo:SO_0001762c |
| URI | http://purl.obolibrary.org/obo/SO_0001779 |
|---|---|
| Super-classes |
obo:SO_0001762c |
| URI | http://purl.obolibrary.org/obo/SO_0001780 |
|---|---|
| Super-classes |
obo:SO_0001762c |
| URI | http://purl.obolibrary.org/obo/SO_0001781 |
|---|---|
| Super-classes |
obo:SO_0001762c |
| URI | http://purl.obolibrary.org/obo/SO_0001782 |
|---|---|
| Super-classes |
obo:SO_0001566c |
| URI | http://purl.obolibrary.org/obo/SO_0001784 |
|---|---|
| Super-classes |
obo:SO_0001785c obo:SO_1000183c |
| Sub-classes |
obo:SO_0002062c |
| URI | http://purl.obolibrary.org/obo/SO_0001785 |
|---|---|
| Super-classes |
obo:SO_0001059c |
| Sub-classes |
obo:SO_0001784c obo:SO_0000199c obo:SO_0001872c |
| URI | http://purl.obolibrary.org/obo/SO_0001786 |
|---|---|
| Super-classes |
obo:SO_0002218c |
| URI | http://purl.obolibrary.org/obo/SO_0001787 |
|---|---|
| Super-classes |
obo:SO_0001629c |
| URI | http://purl.obolibrary.org/obo/SO_0001788 |
|---|---|
| Super-classes |
obo:SO_0000330c |
| Restrictions |
so:part_ofop some obo:SO_0000186c |
| URI | http://purl.obolibrary.org/obo/SO_0001789 |
|---|---|
| Super-classes |
obo:SO_0005855c |
| URI | http://purl.obolibrary.org/obo/SO_0001790 |
|---|---|
| Super-classes |
obo:SO_0000143c |
| URI | http://purl.obolibrary.org/obo/SO_0001791 |
|---|---|
| Super-classes |
obo:SO_0001576c |
| Sub-classes |
obo:SO_0001622c obo:SO_0001792c obo:SO_0001580c |
| URI | http://purl.obolibrary.org/obo/SO_0001792 |
|---|---|
| Super-classes |
obo:SO_0001619c obo:SO_0001791c |
| URI | http://purl.obolibrary.org/obo/SO_0001793 |
|---|---|
| Super-classes |
obo:SO_0000150c |
| Restrictions |
so:part_ofop some obo:SO_0000151c |
| URI | http://purl.obolibrary.org/obo/SO_0001794 |
|---|---|
| Super-classes |
obo:SO_0000577c |
| URI | http://purl.obolibrary.org/obo/SO_0001795 |
|---|---|
| Super-classes |
obo:SO_0000577c |
| URI | http://purl.obolibrary.org/obo/SO_0001796 |
|---|---|
| Super-classes |
obo:SO_0000330c |
| Restrictions |
so:part_ofop some obo:SO_0001795c |
| URI | http://purl.obolibrary.org/obo/SO_0001797 |
|---|---|
| Super-classes |
obo:SO_0000657c |
| Sub-classes |
obo:SO_0001899c obo:SO_0001898c obo:SO_0001798c obo:SO_0001799c |
| URI | http://purl.obolibrary.org/obo/SO_0001798 |
|---|---|
| Super-classes |
obo:SO_0001797c |
| Restrictions |
so:part_ofop some obo:SO_0001795c so:part_ofop some obo:SO_0001796c |
| URI | http://purl.obolibrary.org/obo/SO_0001799 |
|---|---|
| Super-classes |
obo:SO_0001797c |
| Restrictions |
so:part_ofop some obo:SO_0001795c |
| URI | http://purl.obolibrary.org/obo/SO_0001800 |
|---|---|
| Super-classes |
obo:SO_0000655c |
| Restrictions |
so:derives_fromop some obo:SO_0001801c |
| URI | http://purl.obolibrary.org/obo/SO_0001801 |
|---|---|
| Super-classes |
obo:SO_0000483c |
| URI | http://purl.obolibrary.org/obo/SO_0001802 |
|---|---|
| Description |
Term requested by M. Dumontier, June 1 2011. |
| Super-classes |
obo:SO_0001545c |
| URI | http://purl.obolibrary.org/obo/SO_0001803 |
|---|---|
| Description |
Term requested by M. Dumontier, June 1 2011. |
| Super-classes |
obo:SO_0001545c |
| URI | http://purl.obolibrary.org/obo/SO_0001804 |
|---|---|
| Description |
Note: PMID:18794354 describes the DDB box, and has lots of alignments, but doesn't actually come out with a consensus sequence. |
| Super-classes |
obo:SO_0001093c |
| URI | http://purl.obolibrary.org/obo/SO_0001805 |
|---|---|
| Super-classes |
obo:SO_0100017c |
| URI | http://purl.obolibrary.org/obo/SO_0001806 |
|---|---|
| Super-classes |
obo:SO_0001527c |
| URI | http://purl.obolibrary.org/obo/SO_0001807 |
|---|---|
| Super-classes |
obo:SO_0100017c |
| URI | http://purl.obolibrary.org/obo/SO_0001808 |
|---|---|
| Super-classes |
obo:SO_0001527c |
| URI | http://purl.obolibrary.org/obo/SO_0001809 |
|---|---|
| Super-classes |
obo:SO_0000418c |
| URI | http://purl.obolibrary.org/obo/SO_0001810 |
|---|---|
| Super-classes |
obo:SO_0001093c |
| URI | http://purl.obolibrary.org/obo/SO_0001811 |
|---|---|
| Super-classes |
obo:SO_0001089c |
| URI | http://purl.obolibrary.org/obo/SO_0001812 |
|---|---|
| Super-classes |
obo:SO_0001114c |
| Restrictions |
so:part_ofop some obo:SO_0001077c |
| URI | http://purl.obolibrary.org/obo/SO_0001813 |
|---|---|
| Super-classes |
obo:SO_0001527c |
| URI | http://purl.obolibrary.org/obo/SO_0001814 |
|---|---|
| Super-classes |
obo:SO_0001761c |
| Sub-classes |
obo:SO_0001816c obo:SO_0001815c |
| URI | http://purl.obolibrary.org/obo/SO_0001815 |
|---|---|
| Super-classes |
obo:SO_0001814c |
| URI | http://purl.obolibrary.org/obo/SO_0001816 |
|---|---|
| Super-classes |
obo:SO_0001814c |
| URI | http://purl.obolibrary.org/obo/SO_0001817 |
|---|---|
| Super-classes |
obo:SO_0000863c |
| URI | http://purl.obolibrary.org/obo/SO_0001818 |
|---|---|
| Super-classes |
obo:SO_0001580c |
| Sub-classes |
obo:SO_0001589c obo:SO_0001650c |
| URI | http://purl.obolibrary.org/obo/SO_0001819 |
|---|---|
| Description |
EBI term: Synonymous SNPs - In coding sequence, not resulting in an amino acid change (i.e. silent mutation). This term is sometimes used synonomously with the more general term 'silent mutation', although a silent mutation may occur in non coding sequence. The best practice is to annotate to the most specific term. |
| Super-classes |
obo:SO_0001580c |
| Sub-classes |
obo:SO_0002019c obo:SO_0001567c |
| URI | http://purl.obolibrary.org/obo/SO_0001820 |
|---|---|
| Super-classes |
obo:SO_0001650c |
| Sub-classes |
obo:SO_0001822c obo:SO_0001821c |
| URI | http://purl.obolibrary.org/obo/SO_0001821 |
|---|---|
| Super-classes |
obo:SO_0001908c obo:SO_0001820c |
| Sub-classes |
obo:SO_0001824c obo:SO_0001823c |
| URI | http://purl.obolibrary.org/obo/SO_0001822 |
|---|---|
| Super-classes |
obo:SO_0001906c obo:SO_0001820c |
| Sub-classes |
obo:SO_0001825c obo:SO_0001826c |
| URI | http://purl.obolibrary.org/obo/SO_0001823 |
|---|---|
| Super-classes |
obo:SO_0001821c |
| URI | http://purl.obolibrary.org/obo/SO_0001824 |
|---|---|
| Super-classes |
obo:SO_0001821c |
| URI | http://purl.obolibrary.org/obo/SO_0001825 |
|---|---|
| Super-classes |
obo:SO_0001822c |
| URI | http://purl.obolibrary.org/obo/SO_0001826 |
|---|---|
| Super-classes |
obo:SO_0001822c |
| URI | http://purl.obolibrary.org/obo/SO_0001827 |
|---|---|
| Description |
Requested by Bayer Cropscience June, 2011. |
| Super-classes |
obo:SO_0000150c |
| URI | http://purl.obolibrary.org/obo/SO_0001828 |
|---|---|
| Super-classes |
obo:SO_0000150c |
| URI | http://purl.obolibrary.org/obo/SO_0001829 |
|---|---|
| Description |
Requested by Bayer Cropscience June, 2011. |
| Super-classes |
obo:SO_0000149c |
| URI | http://purl.obolibrary.org/obo/SO_0001830 |
|---|---|
| Description |
Requested by Bayer Cropscience June, 2011. |
| Super-classes |
obo:SO_0000006c |
| URI | http://purl.obolibrary.org/obo/SO_0001831 |
|---|---|
| Super-classes |
obo:SO_0000349c |
| URI | http://purl.obolibrary.org/obo/SO_0001832 |
|---|---|
| Super-classes |
obo:SO_0000839c |
| Sub-classes |
obo:SO_0001834c obo:SO_0001833c |
| URI | http://purl.obolibrary.org/obo/SO_0001833 |
|---|---|
| Super-classes |
obo:SO_0001832c |
| URI | http://purl.obolibrary.org/obo/SO_0001834 |
|---|---|
| Super-classes |
obo:SO_0001832c |
| URI | http://purl.obolibrary.org/obo/SO_0001835 |
|---|---|
| Super-classes |
obo:SO_0000301c |
| URI | http://purl.obolibrary.org/obo/SO_0001836 |
|---|---|
| Super-classes |
obo:SO_0000301c |
| URI | http://purl.obolibrary.org/obo/SO_0001837 |
|---|---|
| Description |
Requested by the EBI. |
| Super-classes |
obo:SO_0000667c |
| Restrictions |
so:containsop some obo:SO_0001037c |
| Sub-classes |
obo:SO_0002187c obo:SO_0002064c obo:SO_0002063c obo:SO_0002065c |
| URI | http://purl.obolibrary.org/obo/SO_0001838 |
|---|---|
| Description |
Requested by the NCBI. |
| Super-classes |
obo:SO_0000667c |
| URI | http://purl.obolibrary.org/obo/SO_0001839 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| URI | http://purl.obolibrary.org/obo/SO_0001840 |
|---|---|
| Description |
Changed to is_a SO:0001055 transcriptional_cis_regulatory_region from core_eukaryotic_promoter_element SO:0001660 after Ruth Lovering from GREEKC initiative pointed out that GATA boxes are frequently in enhancer regions, Dave Sant Aug 2020. Moved from is_a SO:0001055 transcriptional_cis_regulatory_region to SO:0000235 TF_binding_site after Colin Logie pointed out that this is a consensus sequence where transcription factors bind, GREEKC Jan 21, 2021. |
| Super-classes |
obo:SO_0000235c |
| Sub-classes |
obo:SO_0001851c |
| URI | http://purl.obolibrary.org/obo/SO_0001841 |
|---|---|
| Description |
This terms is used by Ensembl and Vega. Pseudogene owing to a SNP/DIP but in other individuals/haplotypes/strains the gene is translated. |
| Super-classes |
obo:SO_0000336c |
| Sub-classes |
obo:SO_0002110c |
| URI | http://purl.obolibrary.org/obo/SO_0001842 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| URI | http://purl.obolibrary.org/obo/SO_0001843 |
|---|---|
| Description |
New synonym Atf1/Pcr1 recognition motif added in response to Antonia Lock GitHub Issue Request #437, PMID:15716492 |
| Super-classes |
obo:SO_0001659c |
| URI | http://purl.obolibrary.org/obo/SO_0001844 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| URI | http://purl.obolibrary.org/obo/SO_0001845 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| URI | http://purl.obolibrary.org/obo/SO_0001846 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| URI | http://purl.obolibrary.org/obo/SO_0001847 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| URI | http://purl.obolibrary.org/obo/SO_0001848 |
|---|---|
| Super-classes |
obo:SO_0001660c |
| URI | http://purl.obolibrary.org/obo/SO_0001849 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| URI | http://purl.obolibrary.org/obo/SO_0001850 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| URI | http://purl.obolibrary.org/obo/SO_0001851 |
|---|---|
| Description |
The synonym IDP (GATA) is found in an annotation but un-traced as far as literature goes. |
| Super-classes |
obo:SO_0001840c |
| URI | http://purl.obolibrary.org/obo/SO_0001852 |
|---|---|
| Description |
Note that this should not be confused with the M-box that has consensus sequence CATGTG and is bound by bHLH transcription factors such as MITF. |
| Super-classes |
obo:SO_0001659c |
| URI | http://purl.obolibrary.org/obo/SO_0001853 |
|---|---|
| Super-classes |
obo:SO_0000713c |
| URI | http://purl.obolibrary.org/obo/SO_0001854 |
|---|---|
| Super-classes |
obo:SO_0000051c |
| URI | http://purl.obolibrary.org/obo/SO_0001855 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| URI | http://purl.obolibrary.org/obo/SO_0001856 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| URI | http://purl.obolibrary.org/obo/SO_0001857 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| URI | http://purl.obolibrary.org/obo/SO_0001858 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| URI | http://purl.obolibrary.org/obo/SO_0001859 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| URI | http://purl.obolibrary.org/obo/SO_0001860 |
|---|---|
| Description |
Page 208 of ISBN:978-0199638901 |
| Super-classes |
obo:SO_0000713c |
| URI | http://purl.obolibrary.org/obo/SO_0001861 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| URI | http://purl.obolibrary.org/obo/SO_0001862 |
|---|---|
| Description |
paper:PMID:16043634. |
| Super-classes |
obo:SO_0000290c |
| URI | http://purl.obolibrary.org/obo/SO_0001863 |
|---|---|
| Super-classes |
obo:SO_0000291c |
| URI | http://purl.obolibrary.org/obo/SO_0001864 |
|---|---|
| Super-classes |
obo:SO_0000713c |
| URI | http://purl.obolibrary.org/obo/SO_0001865 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| URI | http://purl.obolibrary.org/obo/SO_0001866 |
|---|---|
| Description |
Requested by Bayer Cropscience December, 2011. |
| Super-classes |
obo:SO_0000149c |
| Restrictions |
so:part_ofop some obo:SO_0000153c so:has_originop some obo:SO_0000153c |
| URI | http://purl.obolibrary.org/obo/SO_0001867 |
|---|---|
| Description |
Requested by Bayer Cropscience December, 2011. |
| Super-classes |
obo:SO_0000704c |
| Sub-classes |
obo:SO_0001868c obo:SO_0001869c |
| URI | http://purl.obolibrary.org/obo/SO_0001868 |
|---|---|
| Description |
Requested by Bayer Cropscience December, 2011. |
| Super-classes |
obo:SO_0001867c |
| URI | http://purl.obolibrary.org/obo/SO_0001869 |
|---|---|
| Description |
Requested by Bayer Cropscience December, 2011. |
| Super-classes |
obo:SO_0001867c |
| URI | http://purl.obolibrary.org/obo/SO_0001870 |
|---|---|
| Super-classes |
obo:SO_0000655c |
| Restrictions |
so:transcribed_fromop some obo:SO_0000165c |
| URI | http://purl.obolibrary.org/obo/SO_0001871 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| URI | http://purl.obolibrary.org/obo/SO_0001872 |
|---|---|
| Description |
NCBI definition: An orphan rearrangement between chromosomal location observed in isolation. |
| Super-classes |
obo:SO_0001411c obo:SO_0001785c |
| URI | http://purl.obolibrary.org/obo/SO_0001873 |
|---|---|
| Super-classes |
obo:SO_0001021c |
| URI | http://purl.obolibrary.org/obo/SO_0001874 |
|---|---|
| Super-classes |
obo:SO_0001021c |
| URI | http://purl.obolibrary.org/obo/SO_0001875 |
|---|---|
| Description |
Requested by Bayer Cropscience January, 2012. |
| Super-classes |
obo:SO_0000148c |
| URI | http://purl.obolibrary.org/obo/SO_0001876 |
|---|---|
| Description |
Requested by Bayer Cropscience January, 2012. |
| Super-classes |
obo:SO_0000353c |
| Sub-classes |
obo:SO_0000719c obo:SO_0000148c |
| URI | http://purl.obolibrary.org/obo/SO_0001877 |
|---|---|
| Super-classes |
obo:SO_0000655c |
| Sub-classes |
obo:SO_0002131c obo:SO_0002132c obo:SO_0001463c obo:SO_0001904c |
| URI | http://purl.obolibrary.org/obo/SO_0001878 |
|---|---|
| Description |
Created in conjunction with the EBI. |
| Super-classes |
obo:SO_0001537c |
| Sub-classes |
obo:SO_0001628c obo:SO_0001566c obo:SO_0001017c obo:SO_0001564c obo:SO_0001907c obo:SO_0001906c |
| URI | http://purl.obolibrary.org/obo/SO_0001879 |
|---|---|
| Description |
Created in conjunction with the EBI. |
| Super-classes |
obo:SO_0001537c |
| Sub-classes |
obo:SO_0001893c obo:SO_0001894c |
| URI | http://purl.obolibrary.org/obo/SO_0001880 |
|---|---|
| Description |
Created in conjunction with the EBI. |
| Super-classes |
obo:SO_0001537c |
| Sub-classes |
obo:SO_0001889c obo:SO_0001891c |
| URI | http://purl.obolibrary.org/obo/SO_0001881 |
|---|---|
| Description |
Created in conjunction with the EBI. |
| Super-classes |
obo:SO_0001537c |
| Sub-classes |
obo:SO_0001883c obo:SO_0001884c |
| URI | http://purl.obolibrary.org/obo/SO_0001882 |
|---|---|
| Description |
Created in conjunction with the EBI. |
| Super-classes |
obo:SO_0001537c |
| Sub-classes |
obo:SO_0001886c obo:SO_0001887c obo:SO_0001565c obo:SO_0001890c |
| URI | http://purl.obolibrary.org/obo/SO_0001883 |
|---|---|
| Description |
Created in conjunction with the EBI. |
| Super-classes |
obo:SO_0001881c |
| URI | http://purl.obolibrary.org/obo/SO_0001884 |
|---|---|
| Description |
Created in conjunction with the EBI. |
| Super-classes |
obo:SO_0001881c |
| Sub-classes |
obo:SO_0001885c |
| URI | http://purl.obolibrary.org/obo/SO_0001885 |
|---|---|
| Description |
Created in conjunction with the EBI. |
| Super-classes |
obo:SO_0001884c |
| URI | http://purl.obolibrary.org/obo/SO_0001886 |
|---|---|
| Description |
Created in conjunction with the EBI. |
| Super-classes |
obo:SO_0001882c |
| URI | http://purl.obolibrary.org/obo/SO_0001887 |
|---|---|
| Description |
Created in conjunction with the EBI. |
| Super-classes |
obo:SO_0001882c |
| Sub-classes |
obo:SO_0001888c |
| URI | http://purl.obolibrary.org/obo/SO_0001888 |
|---|---|
| Description |
Created in conjunction with the EBI. |
| Super-classes |
obo:SO_0001887c |
| URI | http://purl.obolibrary.org/obo/SO_0001889 |
|---|---|
| Description |
Created in conjunction with the EBI. |
| Super-classes |
obo:SO_0001880c |
| URI | http://purl.obolibrary.org/obo/SO_0001890 |
|---|---|
| Description |
Created in conjunction with the EBI. |
| Super-classes |
obo:SO_0001882c |
| URI | http://purl.obolibrary.org/obo/SO_0001891 |
|---|---|
| Description |
Created in conjunction with the EBI. |
| Super-classes |
obo:SO_0001880c |
| Sub-classes |
obo:SO_0001892c |
| URI | http://purl.obolibrary.org/obo/SO_0001892 |
|---|---|
| Description |
Created in conjunction with the EBI. |
| Super-classes |
obo:SO_0001891c |
| URI | http://purl.obolibrary.org/obo/SO_0001893 |
|---|---|
| Description |
Created in conjunction with the EBI. |
| Super-classes |
obo:SO_0001879c |
| URI | http://purl.obolibrary.org/obo/SO_0001894 |
|---|---|
| Description |
Created in conjunction with the EBI. |
| Super-classes |
obo:SO_0001879c |
| Sub-classes |
obo:SO_0001895c |
| URI | http://purl.obolibrary.org/obo/SO_0001895 |
|---|---|
| Description |
Created in conjunction with the EBI. |
| Super-classes |
obo:SO_0001894c |
| URI | http://purl.obolibrary.org/obo/SO_0001896 |
|---|---|
| Super-classes |
obo:SO_0000316c |
| Restrictions |
so:part_ofop some obo:SO_0000101c |
| URI | http://purl.obolibrary.org/obo/SO_0001897 |
|---|---|
| Super-classes |
obo:SO_0000336c |
| Restrictions |
so:part_ofop some obo:SO_0000101c |
| URI | http://purl.obolibrary.org/obo/SO_0001898 |
|---|---|
| Description |
For the S. pombe project - requested by Val Wood. |
| Super-classes |
obo:SO_0001797c |
| Restrictions |
so:part_ofop some obo:SO_0001799c |
| URI | http://purl.obolibrary.org/obo/SO_0001899 |
|---|---|
| Description |
For the S. pombe project - requested by Val Wood. |
| Super-classes |
obo:SO_0001797c |
| Restrictions |
so:part_ofop some obo:SO_0001799c |
| URI | http://purl.obolibrary.org/obo/SO_0001901 |
|---|---|
| Super-classes |
obo:SO_0001660c |
| URI | http://purl.obolibrary.org/obo/SO_0001902 |
|---|---|
| Super-classes |
obo:SO_0000835c |
| Restrictions |
so:part_ofop some obo:SO_0000185c |
| URI | http://purl.obolibrary.org/obo/SO_0001904 |
|---|---|
| Description |
Relationship is_a SO:0000644 antisense_RNA added 23 April 2021. See GitHub Issue #443 |
| Super-classes |
obo:SO_0000644c obo:SO_0001877c |
| URI | http://purl.obolibrary.org/obo/SO_0001905 |
|---|---|
| Super-classes |
obo:SO_0000185c |
| Restrictions |
so:derives_fromop some obo:SO_0001799c |
| URI | http://purl.obolibrary.org/obo/SO_0001906 |
|---|---|
| Super-classes |
obo:SO_0001878c |
| Sub-classes |
obo:SO_0001822c obo:SO_0001910c obo:SO_0001587c |
| URI | http://purl.obolibrary.org/obo/SO_0001907 |
|---|---|
| Super-classes |
obo:SO_0001878c |
| Sub-classes |
obo:SO_0001908c obo:SO_0001578c |
| URI | http://purl.obolibrary.org/obo/SO_0001908 |
|---|---|
| Super-classes |
obo:SO_0001907c |
| Sub-classes |
obo:SO_0001909c obo:SO_0001821c |
| URI | http://purl.obolibrary.org/obo/SO_0001909 |
|---|---|
| Super-classes |
obo:SO_0001589c obo:SO_0001908c |
| URI | http://purl.obolibrary.org/obo/SO_0001910 |
|---|---|
| Super-classes |
obo:SO_0001906c obo:SO_0001589c |
| URI | http://purl.obolibrary.org/obo/SO_0001911 |
|---|---|
| Super-classes |
obo:SO_0001563c |
| URI | http://purl.obolibrary.org/obo/SO_0001912 |
|---|---|
| Super-classes |
obo:SO_0001563c |
| URI | http://purl.obolibrary.org/obo/SO_0001913 |
|---|---|
| Description |
Requested by Kevin Clancy - invitrogen -May 2012. |
| Super-classes |
obo:SO_0000613c |
| URI | http://purl.obolibrary.org/obo/SO_0001914 |
|---|---|
| Description |
Requested by Midori - June 2012. |
| Super-classes |
obo:SO_0000713c |
| URI | http://purl.obolibrary.org/obo/SO_0001915 |
|---|---|
| Super-classes |
obo:SO_0001410c |
| Sub-classes |
obo:SO_0001917c |
| URI | http://purl.obolibrary.org/obo/SO_0001916 |
|---|---|
| Super-classes |
obo:SO_0000324c |
| URI | http://purl.obolibrary.org/obo/SO_0001917 |
|---|---|
| Super-classes |
obo:SO_0001915c |
| URI | http://purl.obolibrary.org/obo/SO_0001918 |
|---|---|
| Super-classes |
obo:SO_0000114c |
| URI | http://purl.obolibrary.org/obo/SO_0001919 |
|---|---|
| Super-classes |
obo:SO_0000114c |
| URI | http://purl.obolibrary.org/obo/SO_0001920 |
|---|---|
| Super-classes |
obo:SO_0000161c |
| URI | http://purl.obolibrary.org/obo/SO_0001921 |
|---|---|
| Description |
Requested by Bayer Cropscience, October, 2012. |
| Super-classes |
obo:SO_0000149c |
| Restrictions |
so:has_originop some obo:SO_0000737c |
| URI | http://purl.obolibrary.org/obo/SO_0001922 |
|---|---|
| Super-classes |
obo:SO_0000148c |
| URI | http://purl.obolibrary.org/obo/SO_0001923 |
|---|---|
| Description |
Telomeric transcription has been documented in mammals, birds, fish, plants and yeast. Requested by Antonia Lock, October 2012. |
| Super-classes |
obo:SO_0001927c |
| URI | http://purl.obolibrary.org/obo/SO_0001924 |
|---|---|
| Description |
Telomeric transcription has been documented in mammals, birds, fish, plants and yeast. Requested by Antonia Lock, October 2012. |
| Super-classes |
obo:SO_0001927c |
| URI | http://purl.obolibrary.org/obo/SO_0001925 |
|---|---|
| Description |
Telomeric transcription has been documented in mammals, birds, fish, plants and yeast. Requested by Antonia Lock, October 2012. |
| Super-classes |
obo:SO_0001927c |
| URI | http://purl.obolibrary.org/obo/SO_0001926 |
|---|---|
| Description |
Telomeric transcription has been documented in mammals, birds, fish, plants and yeast. Requested by Antonia Lock, October 2012. |
| Super-classes |
obo:SO_0001927c |
| URI | http://purl.obolibrary.org/obo/SO_0001927 |
|---|---|
| Super-classes |
obo:SO_0000655c |
| Sub-classes |
obo:SO_0001923c obo:SO_0001926c obo:SO_0001925c obo:SO_0001924c |
| URI | http://purl.obolibrary.org/obo/SO_0001928 |
|---|---|
| Description |
This term is used by Complete Genomics in the structural variant analysis files. |
| Super-classes |
obo:SO_1000035c |
| URI | http://purl.obolibrary.org/obo/SO_0001929 |
|---|---|
| Description |
Requested by Bayer Cropscience, October, 2012. |
| Super-classes |
obo:SO_0000150c |
| Restrictions |
so:has_originop some obo:SO_0001032c |
| URI | http://purl.obolibrary.org/obo/SO_0001930 |
|---|---|
| Description |
Requested by Bayer Cropscience, October, 2012. |
| Super-classes |
obo:SO_0000150c |
| Restrictions |
so:has_originop some obo:SO_0001033c |
| URI | http://purl.obolibrary.org/obo/SO_0001931 |
|---|---|
| Description |
Requested by Bayer Cropscience November, 2012. |
| Super-classes |
obo:SO_0000994c |
| URI | http://purl.obolibrary.org/obo/SO_0001932 |
|---|---|
| Super-classes |
obo:SO_0001695c |
| URI | http://purl.obolibrary.org/obo/SO_0001933 |
|---|---|
| Super-classes |
obo:SO_0001695c |
| URI | http://purl.obolibrary.org/obo/SO_0001934 |
|---|---|
| Super-classes |
obo:SO_0000705c |
| URI | http://purl.obolibrary.org/obo/SO_0001935 |
|---|---|
| Super-classes |
obo:SO_0001701c |
| URI | http://purl.obolibrary.org/obo/SO_0001936 |
|---|---|
| Super-classes |
obo:SO_0001973c |
| URI | http://purl.obolibrary.org/obo/SO_0001937 |
|---|---|
| Super-classes |
obo:SO_0002143c |
| URI | http://purl.obolibrary.org/obo/SO_0001938 |
|---|---|
| Super-classes |
obo:SO_0002142c |
| URI | http://purl.obolibrary.org/obo/SO_0001939 |
|---|---|
| Super-classes |
obo:SO_0001972c |
| URI | http://purl.obolibrary.org/obo/SO_0001940 |
|---|---|
| Super-classes |
obo:SO_0002143c |
| URI | http://purl.obolibrary.org/obo/SO_0001941 |
|---|---|
| Super-classes |
obo:SO_0001972c |
| URI | http://purl.obolibrary.org/obo/SO_0001942 |
|---|---|
| Super-classes |
obo:SO_0002143c |
| URI | http://purl.obolibrary.org/obo/SO_0001943 |
|---|---|
| Super-classes |
obo:SO_0001973c |
| URI | http://purl.obolibrary.org/obo/SO_0001944 |
|---|---|
| Super-classes |
obo:SO_0002142c |
| URI | http://purl.obolibrary.org/obo/SO_0001945 |
|---|---|
| Super-classes |
obo:SO_0001973c |
| URI | http://purl.obolibrary.org/obo/SO_0001946 |
|---|---|
| Super-classes |
obo:SO_0002143c |
| URI | http://purl.obolibrary.org/obo/SO_0001947 |
|---|---|
| Super-classes |
obo:SO_0001701c |
| URI | http://purl.obolibrary.org/obo/SO_0001948 |
|---|---|
| Super-classes |
obo:SO_0001701c |
| URI | http://purl.obolibrary.org/obo/SO_0001949 |
|---|---|
| Super-classes |
obo:SO_0001701c |
| URI | http://purl.obolibrary.org/obo/SO_0001950 |
|---|---|
| Super-classes |
obo:SO_0001701c |
| URI | http://purl.obolibrary.org/obo/SO_0001951 |
|---|---|
| Super-classes |
obo:SO_0001701c |
| URI | http://purl.obolibrary.org/obo/SO_0001952 |
|---|---|
| Super-classes |
obo:SO_0001055c |
| URI | http://purl.obolibrary.org/obo/SO_0001953 |
|---|---|
| Super-classes |
obo:SO_0001954c |
| URI | http://purl.obolibrary.org/obo/SO_0001954 |
|---|---|
| Description |
Not a great term for annotation, but used to classify the various regions related to restriction enzymes. |
| Super-classes |
obo:SO_0001411c |
| Sub-classes |
obo:SO_0001687c obo:SO_0001953c obo:SO_0001695c |
| URI | http://purl.obolibrary.org/obo/SO_0001955 |
|---|---|
| Super-classes |
obo:SO_0000839c |
| URI | http://purl.obolibrary.org/obo/SO_0001956 |
|---|---|
| Super-classes |
obo:SO_0000839c |
| URI | http://purl.obolibrary.org/obo/SO_0001958 |
|---|---|
| Description |
Requested by PomBase 3604508. |
| Super-classes |
obo:SO_0000188c |
| URI | http://purl.obolibrary.org/obo/SO_0001959 |
|---|---|
| Super-classes |
obo:SO_0001660c |
| URI | http://purl.obolibrary.org/obo/SO_0001960 |
|---|---|
| Super-classes |
obo:SO_0000114c |
| URI | http://purl.obolibrary.org/obo/SO_0001961 |
|---|---|
| Super-classes |
obo:SO_0001963c |
| URI | http://purl.obolibrary.org/obo/SO_0001962 |
|---|---|
| Super-classes |
obo:SO_0000305c |
| Sub-classes |
obo:SO_0001967c obo:SO_0000161c |
| URI | http://purl.obolibrary.org/obo/SO_0001963 |
|---|---|
| Super-classes |
obo:SO_0000305c |
| Sub-classes |
obo:SO_0001966c obo:SO_0001961c obo:SO_0000114c |
| URI | http://purl.obolibrary.org/obo/SO_0001964 |
|---|---|
| Super-classes |
obo:SO_0000305c |
| Sub-classes |
obo:SO_0001965c |
| URI | http://purl.obolibrary.org/obo/SO_0001965 |
|---|---|
| Super-classes |
obo:SO_0001964c |
| URI | http://purl.obolibrary.org/obo/SO_0001966 |
|---|---|
| Super-classes |
obo:SO_0001963c |
| URI | http://purl.obolibrary.org/obo/SO_0001967 |
|---|---|
| Super-classes |
obo:SO_0001962c |
| URI | http://purl.obolibrary.org/obo/SO_0001968 |
|---|---|
| Super-classes |
obo:SO_0001576c |
| Sub-classes |
obo:SO_0001969c obo:SO_0001622c obo:SO_0001580c |
| URI | http://purl.obolibrary.org/obo/SO_0001969 |
|---|---|
| Super-classes |
obo:SO_0001968c obo:SO_0001627c |
| Sub-classes |
obo:SO_0002091c obo:SO_0002090c |
| URI | http://purl.obolibrary.org/obo/SO_0001970 |
|---|---|
| Super-classes |
obo:SO_0001627c obo:SO_0001619c |
| URI | http://purl.obolibrary.org/obo/SO_0001971 |
|---|---|
| Super-classes |
obo:SO_0001429c |
| URI | http://purl.obolibrary.org/obo/SO_0001972 |
|---|---|
| Super-classes |
obo:SO_0001702c |
| Sub-classes |
obo:SO_0001729c obo:SO_0001941c obo:SO_0001939c obo:SO_0001730c obo:SO_0001731c |
| URI | http://purl.obolibrary.org/obo/SO_0001973 |
|---|---|
| Super-classes |
obo:SO_0001702c |
| Sub-classes |
obo:SO_0001718c obo:SO_0002049c obo:SO_0001719c obo:SO_0001943c obo:SO_0001945c obo:SO_0001936c obo:SO_0001703c obo:SO_0001704c |
| URI | http://purl.obolibrary.org/obo/SO_0001974 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| URI | http://purl.obolibrary.org/obo/SO_0001975 |
|---|---|
| Description |
Requested by Jackie Quinn. The sticky restriction sites are different from junctions because they include the sequence that is cut, inclusive of the five prime junction and the three prime junction. |
| Super-classes |
obo:SO_0001692c |
| URI | http://purl.obolibrary.org/obo/SO_0001976 |
|---|---|
| Description |
Requested by Jackie Quinn. The sticky restriction sites are different from junctions because they include the sequence that is cut, inclusive of the five prime junction and the three prime junction. |
| Super-classes |
obo:SO_0001692c |
| URI | http://purl.obolibrary.org/obo/SO_0001977 |
|---|---|
| Super-classes |
obo:SO_0000833c |
| URI | http://purl.obolibrary.org/obo/SO_0001978 |
|---|---|
| Description |
Requested by Jackie Quinn for use in synthetic biology. |
| Super-classes |
obo:SO_0000804c |
| URI | http://purl.obolibrary.org/obo/SO_0001979 |
|---|---|
| Super-classes |
obo:SO_0000715c |
| Sub-classes |
obo:SO_0002207c |
| URI | http://purl.obolibrary.org/obo/SO_0001980 |
|---|---|
| Description |
A plant specific region. |
| Super-classes |
obo:SO_0001678c |
| URI | http://purl.obolibrary.org/obo/SO_0001981 |
|---|---|
| Super-classes |
obo:SO_0001678c |
| URI | http://purl.obolibrary.org/obo/SO_0001982 |
|---|---|
| Super-classes |
obo:SO_0001678c |
| URI | http://purl.obolibrary.org/obo/SO_0001983 |
|---|---|
| Description |
Requested by Andy Menzies at the Sanger. This isn't necessarily a protein coding change. A premature start codon can effect the production of a mature protein product by providing a competing translation start point. Some genes balance their expression this way, eg THPO requires the presence of a premature start to limit expression, its loss leads to Familial thrombocythemia. |
| Super-classes |
obo:SO_0001623c |
| Sub-classes |
obo:SO_0001988c obo:SO_0001990c obo:SO_0001989c |
| URI | http://purl.obolibrary.org/obo/SO_0001984 |
|---|---|
| Super-classes |
obo:SO_0005854c |
| Sub-classes |
obo:SO_0002157c obo:SO_0002158c |
| URI | http://purl.obolibrary.org/obo/SO_0001985 |
|---|---|
| Description |
Requested by Midori Harris, 2013. |
| Super-classes |
obo:SO_0001411c |
| URI | http://purl.obolibrary.org/obo/SO_0001986 |
|---|---|
| Description |
Requested by Graham Ritchie, EBI/Sanger. |
| Super-classes |
obo:SO_0001628c |
| URI | http://purl.obolibrary.org/obo/SO_0001987 |
|---|---|
| Description |
Requested by Graham Ritchie, EBI/Sanger. |
| Super-classes |
obo:SO_0001628c |
| URI | http://purl.obolibrary.org/obo/SO_0001988 |
|---|---|
| Super-classes |
obo:SO_0001983c |
| URI | http://purl.obolibrary.org/obo/SO_0001989 |
|---|---|
| Super-classes |
obo:SO_0001983c |
| URI | http://purl.obolibrary.org/obo/SO_0001990 |
|---|---|
| Super-classes |
obo:SO_0001983c |
| URI | http://purl.obolibrary.org/obo/SO_0001991 |
|---|---|
| Description |
Requested by Bayer Cropscience September, 2013. |
| Super-classes |
obo:SO_0000994c |
| URI | http://purl.obolibrary.org/obo/SO_0001992 |
|---|---|
| Super-classes |
obo:SO_0001650c |
| Sub-classes |
obo:SO_0001587c obo:SO_0002214c obo:SO_0002012c obo:SO_0001578c obo:SO_0001583c |
| URI | http://purl.obolibrary.org/obo/SO_0001993 |
|---|---|
| Description |
Added by Andy Menzies (Sanger). |
| Super-classes |
obo:SO_0001419c |
| URI | http://purl.obolibrary.org/obo/SO_0001994 |
|---|---|
| Super-classes |
obo:SO_0001014c |
| Restrictions |
so:part_ofop some obo:SO_0001993c |
| URI | http://purl.obolibrary.org/obo/SO_0001995 |
|---|---|
| Description |
Added by Andy Menzies (Sanger). |
| Super-classes |
obo:SO_0001568c |
| URI | http://purl.obolibrary.org/obo/SO_0001996 |
|---|---|
| Super-classes |
obo:SO_0001014c |
| URI | http://purl.obolibrary.org/obo/SO_0001997 |
|---|---|
| Super-classes |
obo:SO_0000628c |
| URI | http://purl.obolibrary.org/obo/SO_0001998 |
|---|---|
| Super-classes |
obo:SO_0000696c |
| URI | http://purl.obolibrary.org/obo/SO_0001999 |
|---|---|
| Super-classes |
obo:SO_0000713c |
| Restrictions |
so:part_ofop some obo:SO_0001789c |
| Sub-classes |
obo:SO_0002002c obo:SO_0002001c obo:SO_0002003c obo:SO_0002024c obo:SO_0002030c |
| URI | http://purl.obolibrary.org/obo/SO_0002001 |
|---|---|
| Description |
Requested by Janos Demeter, SGD. |
| Super-classes |
obo:SO_0001999c |
| URI | http://purl.obolibrary.org/obo/SO_0002002 |
|---|---|
| Description |
Requested by Janos Demeter, SGD. |
| Super-classes |
obo:SO_0001999c |
| URI | http://purl.obolibrary.org/obo/SO_0002003 |
|---|---|
| Description |
Requested by Janos Demeter, SGD. |
| Super-classes |
obo:SO_0001999c |
| URI | http://purl.obolibrary.org/obo/SO_0002004 |
|---|---|
| Super-classes |
obo:SO_0000713c |
| Restrictions |
so:part_ofop some obo:SO_0000436c |
| URI | http://purl.obolibrary.org/obo/SO_0002005 |
|---|---|
| Description |
Requested by Antonia Locke, (Pombe). |
| Super-classes |
obo:SO_0000713c |
| URI | http://purl.obolibrary.org/obo/SO_0002006 |
|---|---|
| Description |
This element is bound by Loz1 in S. pombe. The paper does not name the element. This term was requested by Midoris Harris, for Pombe. |
| Super-classes |
obo:SO_0001659c |
| Sub-classes |
obo:SO_0002225c |
| URI | http://purl.obolibrary.org/obo/SO_0002007 |
|---|---|
| Super-classes |
obo:SO_1000002c |
| Sub-classes |
obo:SO_0001013c |
| URI | http://purl.obolibrary.org/obo/SO_0002008 |
|---|---|
| Description |
Request from Uma Devi Paila, UVA. Variants in the sites of rare amino acids e.g. Selenocysteine. These are important impact terms since a loss of such rare amino acids may lead to a loss of function. |
| Super-classes |
obo:SO_0001586c |
| Sub-classes |
obo:SO_0002010c obo:SO_0002009c |
| URI | http://purl.obolibrary.org/obo/SO_0002009 |
|---|---|
| Description |
Request from Uma Devi Paila, UVA. Variants in the sites of rare amino acids e.g. Selenocysteine. These are important impact terms since a loss of such rare amino acids may lead to a loss of function. |
| Super-classes |
obo:SO_0002008c |
| URI | http://purl.obolibrary.org/obo/SO_0002010 |
|---|---|
| Description |
Request from Uma Devi Paila, UVA. Variants in the sites of rare amino acids e.g. Selenocysteine. These are important impact terms since a loss of such rare amino acids may lead to a loss of function. |
| Super-classes |
obo:SO_0002008c |
| URI | http://purl.obolibrary.org/obo/SO_0002011 |
|---|---|
| Description |
Requested by Pablo Cingolani, for use in SnpEff. |
| Super-classes |
obo:SO_0001576c |
| URI | http://purl.obolibrary.org/obo/SO_0002012 |
|---|---|
| Description |
Request from Uma Devi Paila, UVA. This term should not be applied to incomplete transcripts. |
| Super-classes |
obo:SO_0001992c obo:SO_0001582c |
| URI | http://purl.obolibrary.org/obo/SO_0002013 |
|---|---|
| Super-classes |
obo:SO_0001623c |
| URI | http://purl.obolibrary.org/obo/SO_0002014 |
|---|---|
| Super-classes |
obo:SO_0001623c |
| URI | http://purl.obolibrary.org/obo/SO_0002015 |
|---|---|
| Super-classes |
obo:SO_0001624c |
| URI | http://purl.obolibrary.org/obo/SO_0002016 |
|---|---|
| Super-classes |
obo:SO_0001624c |
| URI | http://purl.obolibrary.org/obo/SO_0002017 |
|---|---|
| Description |
Requested by Uma Paila (UVA) for snpEff. |
| Super-classes |
obo:SO_0001628c |
| URI | http://purl.obolibrary.org/obo/SO_0002018 |
|---|---|
| Description |
Requested by Uma Paila (UVA) for snpEff. |
| Super-classes |
obo:SO_0001627c |
| URI | http://purl.obolibrary.org/obo/SO_0002019 |
|---|---|
| Description |
Requested by Uma Paila as this term is annotated by snpEff. This would be used for non_AUG start codon annotation. |
| Super-classes |
obo:SO_0001582c obo:SO_0001819c |
| URI | http://purl.obolibrary.org/obo/SO_0002020 |
|---|---|
| Description |
Requested by Antonia Lock. Insulator is included as a related synonym since this is used to refer to insulator in the literature (NCBI:cf). |
| Super-classes |
obo:SO_0000627c |
| URI | http://purl.obolibrary.org/obo/SO_0002021 |
|---|---|
| Description |
Requested by Midori Harris. |
| Super-classes |
obo:SO_0000713c |
| URI | http://purl.obolibrary.org/obo/SO_0002022 |
|---|---|
| Super-classes |
obo:SO_0000655c |
| URI | http://purl.obolibrary.org/obo/SO_0002023 |
|---|---|
| Super-classes |
obo:SO_0000324c |
| URI | http://purl.obolibrary.org/obo/SO_0002024 |
|---|---|
| Description |
MERGED COMMENT: TARGET COMMENT: Requested by Janos Demeter, SGD. SOURCE COMMENT: Requested by Janos Demeter, SGD. |
| Super-classes |
obo:SO_0001999c |
| URI | http://purl.obolibrary.org/obo/SO_0002025 |
|---|---|
| Description |
Comment: An example of this is the Sme2 locus in fission yeast S. pombe, where is coincident with an ribonuclear complex termed the "Mei2 dot". This term was Requested by Val Wood, PomBase. |
| Super-classes |
obo:SO_0000713c |
| URI | http://purl.obolibrary.org/obo/SO_0002026 |
|---|---|
| Description |
Requested by Janos Demeter 2014. |
| Super-classes |
obo:SO_0000842c |
| URI | http://purl.obolibrary.org/obo/SO_0002027 |
|---|---|
| Super-classes |
obo:SO_0000236c |
| Sub-classes |
obo:SO_0002151c obo:SO_0002150c |
| URI | http://purl.obolibrary.org/obo/SO_0002028 |
|---|---|
| Super-classes |
obo:SO_0000236c |
| URI | http://purl.obolibrary.org/obo/SO_0002029 |
|---|---|
| Super-classes |
obo:SO_0000236c |
| URI | http://purl.obolibrary.org/obo/SO_0002030 |
|---|---|
| Super-classes |
obo:SO_0001999c |
| URI | http://purl.obolibrary.org/obo/SO_0002031 |
|---|---|
| Super-classes |
obo:SO_0000655c |
| URI | http://purl.obolibrary.org/obo/SO_0002032 |
|---|---|
| Description |
MoRs are generated from miR hairpins that are longer and can produce two functional miR per strand. They are called moRs because they are not located next to the loop and thus their biogenesis process is a little different, but functionally, they are supposed to act like miRs. It is the same for loRs that are the loop fragments, they are generated differently than miRs or moRs but if loaded into the risc they are supposed to act the same way miRs do. Requested by Thomas Desvignes, Jan 2015. |
| Super-classes |
obo:SO_0000370c |
| Restrictions |
so:part_ofop some obo:SO_0001244c |
| URI | http://purl.obolibrary.org/obo/SO_0002033 |
|---|---|
| Description |
MoRs are generated from miR hairpins that are longer and can produce two functional miR per strand. They are called moRs because they are not located next to the loop and thus their biogenesis process is a little different, but functionally, they are supposed to act like miRs. It is the same for loRs that are the loop fragments, they are generated differently than miRs or moRs but if loaded into the risc they are supposed to act the same way miRs do. Requested by Thomas Desvignes, Jan 2015. |
| Super-classes |
obo:SO_0000370c |
| Restrictions |
so:part_ofop some obo:SO_0001244c |
| URI | http://purl.obolibrary.org/obo/SO_0002034 |
|---|---|
| Super-classes |
obo:SO_0000232c |
| Restrictions |
so:has_partop some obo:SO_0001244c |
| URI | http://purl.obolibrary.org/obo/SO_0002035 |
|---|---|
| Super-classes |
obo:SO_0000483c |
| Sub-classes |
obo:SO_0002113c obo:SO_0002036c |
| URI | http://purl.obolibrary.org/obo/SO_0002036 |
|---|---|
| Super-classes |
obo:SO_0002035c |
| Restrictions |
so:has_partop some obo:SO_0001244c |
| URI | http://purl.obolibrary.org/obo/SO_0002037 |
|---|---|
| Super-classes |
obo:SO_0000210c |
| Restrictions |
so:has_partop some obo:SO_0001244c |
| URI | http://purl.obolibrary.org/obo/SO_0002038 |
|---|---|
| Super-classes |
obo:SO_0000483c |
| Sub-classes |
obo:SO_0002039c |
| URI | http://purl.obolibrary.org/obo/SO_0002039 |
|---|---|
| Super-classes |
obo:SO_0002038c |
| Restrictions |
so:has_partop some obo:SO_0001244c |
| URI | http://purl.obolibrary.org/obo/SO_0002040 |
|---|---|
| Super-classes |
obo:SO_0000483c |
| Sub-classes |
obo:SO_0002041c |
| URI | http://purl.obolibrary.org/obo/SO_0002041 |
|---|---|
| Super-classes |
obo:SO_0002040c |
| Restrictions |
so:has_partop some obo:SO_0001244c |
| URI | http://purl.obolibrary.org/obo/SO_0002042 |
|---|---|
| Super-classes |
obo:SO_0000483c |
| Sub-classes |
obo:SO_0002043c |
| URI | http://purl.obolibrary.org/obo/SO_0002043 |
|---|---|
| Super-classes |
obo:SO_0002042c |
| Restrictions |
so:has_partop some obo:SO_0001244c |
| URI | http://purl.obolibrary.org/obo/SO_0002044 |
|---|---|
| Description |
Requested by Rama - SGD. |
| Super-classes |
obo:SO_0001659c |
| URI | http://purl.obolibrary.org/obo/SO_0002045 |
|---|---|
| Description |
Requested by Rama, SGD. |
| Super-classes |
obo:SO_0001659c obo:SO_0000235c |
| URI | http://purl.obolibrary.org/obo/SO_0002046 |
|---|---|
| Description |
Requested by Rama, SGD. |
| Super-classes |
obo:SO_0001461c |
| URI | http://purl.obolibrary.org/obo/SO_0002047 |
|---|---|
| Description |
Moved from transcription_regulatory_region (SO:0001679) to transcriptional_cis_regulatory_region (SO:0001055) by Dave Sant on Feb 11, 2021 when transcription_regulatory_region was merged into transcriptional_cis_regulatory_region to be consistent with GO and reduce redundancy as part of the GREEKC consortium. See GitHub Issue #527. |
| Super-classes |
obo:SO_0001055c |
| URI | http://purl.obolibrary.org/obo/SO_0002048 |
|---|---|
| Super-classes |
obo:SO_0000717c |
| URI | http://purl.obolibrary.org/obo/SO_0002049 |
|---|---|
| Description |
Requested by: Sagar Jain, Richard Scheuermann. |
| Super-classes |
obo:SO_0001973c |
| URI | http://purl.obolibrary.org/obo/SO_0002050 |
|---|---|
| Super-classes |
obo:SO_0000167c |
| URI | http://purl.obolibrary.org/obo/SO_0002051 |
|---|---|
| Super-classes |
obo:SO_0000167c |
| URI | http://purl.obolibrary.org/obo/SO_0002052 |
|---|---|
| Description |
Requested by Deanna Church. |
| Super-classes |
obo:SO_0002218c |
| URI | http://purl.obolibrary.org/obo/SO_0002053 |
|---|---|
| Super-classes |
obo:SO_0002218c |
| URI | http://purl.obolibrary.org/obo/SO_0002054 |
|---|---|
| Super-classes |
obo:SO_0002218c |
| URI | http://purl.obolibrary.org/obo/SO_0002055 |
|---|---|
| Super-classes |
obo:SO_0002218c |
| Sub-classes |
obo:SO_0002317c |
| URI | http://purl.obolibrary.org/obo/SO_0002056 |
|---|---|
| Description |
Requested by Javier Diez Perez. |
| Super-classes |
obo:SO_0000625c |
| Restrictions |
so:part_ofop some obo:SO_0000188c |
| URI | http://purl.obolibrary.org/obo/SO_0002058 |
|---|---|
| Description |
Requested by Javier Diez Perez. |
| Super-classes |
obo:SO_0000852c obo:SO_0000625c |
| URI | http://purl.obolibrary.org/obo/SO_0002059 |
|---|---|
| Super-classes |
obo:SO_0001681c |
| URI | http://purl.obolibrary.org/obo/SO_0002060 |
|---|---|
| Super-classes |
obo:SO_1000044c |
| Sub-classes |
obo:SO_1000150c |
| URI | http://purl.obolibrary.org/obo/SO_0002061 |
|---|---|
| Super-classes |
obo:SO_1000044c |
| URI | http://purl.obolibrary.org/obo/SO_0002062 |
|---|---|
| Super-classes |
obo:SO_0001784c |
| URI | http://purl.obolibrary.org/obo/SO_0002063 |
|---|---|
| Super-classes |
obo:SO_0001837c |
| URI | http://purl.obolibrary.org/obo/SO_0002064 |
|---|---|
| Super-classes |
obo:SO_0001837c |
| Restrictions |
so:derives_fromop some obo:SO_0002272c |
| URI | http://purl.obolibrary.org/obo/SO_0002065 |
|---|---|
| Super-classes |
obo:SO_0001837c |
| URI | http://purl.obolibrary.org/obo/SO_0002066 |
|---|---|
| Super-classes |
obo:SO_0000159c |
| Sub-classes |
obo:SO_0002068c obo:SO_0002067c obo:SO_0002070c obo:SO_0002069c |
| URI | http://purl.obolibrary.org/obo/SO_0002067 |
|---|---|
| Super-classes |
obo:SO_0002066c |
| Restrictions |
so:derives_fromop some obo:SO_0002268c |
| URI | http://purl.obolibrary.org/obo/SO_0002068 |
|---|---|
| Super-classes |
obo:SO_0002066c |
| URI | http://purl.obolibrary.org/obo/SO_0002069 |
|---|---|
| Super-classes |
obo:SO_0002066c |
| Restrictions |
so:derives_fromop some obo:SO_0002272c |
| URI | http://purl.obolibrary.org/obo/SO_0002070 |
|---|---|
| Super-classes |
obo:SO_0002066c |
| URI | http://purl.obolibrary.org/obo/SO_0002071 |
|---|---|
| Super-classes |
obo:SO_1001251c |
| URI | http://purl.obolibrary.org/obo/SO_0002072 |
|---|---|
| Super-classes |
obo:SO_0000110c |
| Sub-classes |
obo:SO_0002073c obo:SO_0001059c |
| URI | http://purl.obolibrary.org/obo/SO_0002073 |
|---|---|
| Description |
This term is requested by the ClinVar data model group for use in the allele registry and such. A sequence at a defined location that is defined to match the reference assembly. |
| Super-classes |
obo:SO_0002072c |
| URI | http://purl.obolibrary.org/obo/SO_0002074 |
|---|---|
| Description |
This term is added to map to the Annovar annotation 'upstream,downstream' . |
| Super-classes |
obo:SO_0001628c |
| URI | http://purl.obolibrary.org/obo/SO_0002075 |
|---|---|
| Description |
This term is to map to the ANNOVAR term 'ncRNA' http://annovar.openbioinformatics.org/en/latest/user-guide/gene/ . The description in the documentation (11/23/15) 'variant overlaps a transcript without coding annotation in the gene definition'. and this is further clarified in the document: ncRNA above refers to RNA without coding annotation. It does not mean that this is a RNA that will never be translated; it merely means that the user-selected gene annotation system was not able to give a coding sequence annotation. It could still code protein products and may have such annotations in future versions of gene annotation or in another gene annotation system. For example, BC039000 is regarded as ncRNA by ANNOVAR when using UCSC Known Gene annotation, but it is regarded as a protein-coding gene by ANNOVAR when using ENSEMBL annotation. It is further clarified in the comments section as: ncRNA does NOT mean conventional non-coding RNA. It means a RNA without complete coding sequence, and it can be a coding RNA that is annotated incorrectly by RefSeq or other gene definition systems. |
| Super-classes |
obo:SO_0001576c |
| Sub-classes |
obo:SO_0002077c obo:SO_0002081c obo:SO_0002078c obo:SO_0002080c obo:SO_0002076c obo:SO_0002079c |
| URI | http://purl.obolibrary.org/obo/SO_0002076 |
|---|---|
| Super-classes |
obo:SO_0002075c |
| URI | http://purl.obolibrary.org/obo/SO_0002077 |
|---|---|
| Super-classes |
obo:SO_0002075c |
| URI | http://purl.obolibrary.org/obo/SO_0002078 |
|---|---|
| Super-classes |
obo:SO_0002075c |
| URI | http://purl.obolibrary.org/obo/SO_0002079 |
|---|---|
| Super-classes |
obo:SO_0002075c |
| Sub-classes |
obo:SO_0002082c |
| URI | http://purl.obolibrary.org/obo/SO_0002080 |
|---|---|
| Super-classes |
obo:SO_0002075c |
| URI | http://purl.obolibrary.org/obo/SO_0002081 |
|---|---|
| Super-classes |
obo:SO_0002075c |
| URI | http://purl.obolibrary.org/obo/SO_0002082 |
|---|---|
| Super-classes |
obo:SO_0002079c |
| URI | http://purl.obolibrary.org/obo/SO_0002083 |
|---|---|
| Super-classes |
obo:SO_0001632c |
| URI | http://purl.obolibrary.org/obo/SO_0002084 |
|---|---|
| Super-classes |
obo:SO_0001630c |
| URI | http://purl.obolibrary.org/obo/SO_0002085 |
|---|---|
| Description |
Requested by SNPEFF team. Feb 2016. |
| Super-classes |
obo:SO_0001565c |
| URI | http://purl.obolibrary.org/obo/SO_0002086 |
|---|---|
| Description |
Requested by SNPEFF team. Feb 2016. |
| Super-classes |
obo:SO_0001565c |
| URI | http://purl.obolibrary.org/obo/SO_0002087 |
|---|---|
| Super-classes |
obo:SO_0000462c |
| Restrictions |
so:part_ofop some obo:SO_0000516c |
| URI | http://purl.obolibrary.org/obo/SO_0002088 |
|---|---|
| Super-classes |
obo:SO_0001630c obo:SO_0001619c |
| URI | http://purl.obolibrary.org/obo/SO_0002089 |
|---|---|
| Description |
Requested by visze github tracker ID 346. |
| Super-classes |
obo:SO_0001624c |
| URI | http://purl.obolibrary.org/obo/SO_0002090 |
|---|---|
| Description |
Requested by visze github tracker ID 346. |
| Super-classes |
obo:SO_0001969c obo:SO_0001624c |
| URI | http://purl.obolibrary.org/obo/SO_0002091 |
|---|---|
| Description |
Requested by visze github tracker ID 346. |
| Super-classes |
obo:SO_0001623c obo:SO_0001969c |
| URI | http://purl.obolibrary.org/obo/SO_0002092 |
|---|---|
| Description |
Requested by visze github tracker ID 346. |
| Super-classes |
obo:SO_0001623c |
| URI | http://purl.obolibrary.org/obo/SO_0002093 |
|---|---|
| Description |
Requested by Pablo Cingolani. The way I calculate this is simply by looking at the PDB entry of one protein and then marking those AA that are within 3 Angstrom of each other (and far away in the AA sequence, e.g. over 20 AA distance). The assumption is that, since they are very close in distance, they must be "interacting" and thus important for protein structure. |
| Super-classes |
obo:SO_0001599c |
| URI | http://purl.obolibrary.org/obo/SO_0002094 |
|---|---|
| Super-classes |
obo:SO_0000339c |
| URI | http://purl.obolibrary.org/obo/SO_0002095 |
|---|---|
| Description |
Moved from is_a ncRNA (SO:0000655) to is_a snoRNA (SO:0000275) as per request from FlyBase by Dave Sant 24 April 2021. See GitHub Issue #509. |
| Super-classes |
obo:SO_0000275c |
| URI | http://purl.obolibrary.org/obo/SO_0002096 |
|---|---|
| Super-classes |
obo:SO_0000248c |
| URI | http://purl.obolibrary.org/obo/SO_0002097 |
|---|---|
| Description |
These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT. |
| Super-classes |
obo:SO_0000336c |
| Sub-classes |
obo:SO_0002099c obo:SO_0002098c |
| URI | http://purl.obolibrary.org/obo/SO_0002098 |
|---|---|
| Description |
These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT. |
| Super-classes |
obo:SO_0002097c |
| Sub-classes |
obo:SO_0002101c obo:SO_0002100c obo:SO_0002102c |
| URI | http://purl.obolibrary.org/obo/SO_0002099 |
|---|---|
| Description |
These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT. |
| Super-classes |
obo:SO_0002097c |
| Sub-classes |
obo:SO_0002104c obo:SO_0002103c |
| URI | http://purl.obolibrary.org/obo/SO_0002100 |
|---|---|
| Description |
These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT. |
| Super-classes |
obo:SO_0002098c |
| URI | http://purl.obolibrary.org/obo/SO_0002101 |
|---|---|
| Description |
These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT. |
| Super-classes |
obo:SO_0002098c |
| URI | http://purl.obolibrary.org/obo/SO_0002102 |
|---|---|
| Description |
These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT. |
| Super-classes |
obo:SO_0002098c |
| URI | http://purl.obolibrary.org/obo/SO_0002103 |
|---|---|
| Description |
These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT. |
| Super-classes |
obo:SO_0002099c |
| URI | http://purl.obolibrary.org/obo/SO_0002104 |
|---|---|
| Description |
These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT. |
| Super-classes |
obo:SO_0002099c |
| URI | http://purl.obolibrary.org/obo/SO_0002105 |
|---|---|
| Description |
Term added as part of collaboration with Gencode, adding biotypes used in annotation. |
| Super-classes |
obo:SO_0000043c |
| URI | http://purl.obolibrary.org/obo/SO_0002106 |
|---|---|
| Description |
Term added as part of collaboration with Gencode, adding biotypes used in annotation. |
| Super-classes |
obo:SO_0001760c |
| URI | http://purl.obolibrary.org/obo/SO_0002107 |
|---|---|
| Description |
Term added as part of collaboration with Gencode, adding biotypes used in annotation. |
| Super-classes |
obo:SO_0001760c |
| URI | http://purl.obolibrary.org/obo/SO_0002108 |
|---|---|
| Description |
Term added as part of collaboration with Gencode, adding biotypes used in annotation. |
| Super-classes |
obo:SO_0001759c |
| URI | http://purl.obolibrary.org/obo/SO_0002109 |
|---|---|
| Description |
Term added as part of collaboration with Gencode, adding biotypes used in annotation. |
| Super-classes |
obo:SO_0000043c |
| URI | http://purl.obolibrary.org/obo/SO_0002110 |
|---|---|
| Description |
Term added as part of collaboration with Gencode, adding biotypes used in annotation. |
| Super-classes |
obo:SO_0001841c |
| URI | http://purl.obolibrary.org/obo/SO_0002111 |
|---|---|
| Description |
Term added as part of collaboration with Gencode, adding biotypes used in annotation. |
| Super-classes |
obo:SO_0001503c |
| Sub-classes |
obo:SO_0002116c |
| URI | http://purl.obolibrary.org/obo/SO_0002112 |
|---|---|
| Description |
Term added as part of collaboration with Gencode, adding biotypes used in annotation. |
| Super-classes |
obo:SO_0000120c |
| URI | http://purl.obolibrary.org/obo/SO_0002113 |
|---|---|
| Description |
Term added as part of collaboration with Gencode, adding biotypes used in annotation. |
| Super-classes |
obo:SO_0002035c |
| URI | http://purl.obolibrary.org/obo/SO_0002114 |
|---|---|
| Description |
Term added as part of collaboration with Gencode, adding biotypes used in annotation. |
| Super-classes |
obo:SO_0000120c |
| Sub-classes |
obo:SO_0002118c |
| URI | http://purl.obolibrary.org/obo/SO_0002115 |
|---|---|
| Description |
These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. |
| Super-classes |
obo:SO_0000185c |
| URI | http://purl.obolibrary.org/obo/SO_0002116 |
|---|---|
| Description |
Term added as part of collaboration with Gencode, adding biotypes used in annotation. |
| Super-classes |
obo:SO_0002111c |
| URI | http://purl.obolibrary.org/obo/SO_0002118 |
|---|---|
| Description |
Term added as part of collaboration with Gencode, adding biotypes used in annotation. |
| Super-classes |
obo:SO_0002114c |
| URI | http://purl.obolibrary.org/obo/SO_0002119 |
|---|---|
| Description |
Requested by HL7 clinical genomics group. |
| Super-classes |
obo:SO_0001763c |
| URI | http://purl.obolibrary.org/obo/SO_0002120 |
|---|---|
| Description |
These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. |
| Super-classes |
obo:SO_0000655c |
| URI | http://purl.obolibrary.org/obo/SO_0002121 |
|---|---|
| Description |
These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT. |
| Super-classes |
obo:SO_0000704c |
| Sub-classes |
obo:SO_0002133c obo:SO_0002122c |
| URI | http://purl.obolibrary.org/obo/SO_0002122 |
|---|---|
| Description |
These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT. |
| Super-classes |
obo:SO_0002121c |
| Sub-classes |
obo:SO_0002126c obo:SO_0002123c obo:SO_0002125c obo:SO_0002124c |
| URI | http://purl.obolibrary.org/obo/SO_0002123 |
|---|---|
| Description |
These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT. |
| Super-classes |
obo:SO_0002122c |
| URI | http://purl.obolibrary.org/obo/SO_0002124 |
|---|---|
| Description |
These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT. |
| Super-classes |
obo:SO_0002122c |
| URI | http://purl.obolibrary.org/obo/SO_0002125 |
|---|---|
| Description |
These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT. |
| Super-classes |
obo:SO_0002122c |
| URI | http://purl.obolibrary.org/obo/SO_0002126 |
|---|---|
| Description |
These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT. |
| Super-classes |
obo:SO_0002122c |
| URI | http://purl.obolibrary.org/obo/SO_0002127 |
|---|---|
| Description |
These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. |
| Super-classes |
obo:SO_0001263c |
| Sub-classes |
obo:SO_0002185c obo:SO_0002182c obo:SO_0001641c obo:SO_0002183c obo:SO_0002184c |
| URI | http://purl.obolibrary.org/obo/SO_0002128 |
|---|---|
| Super-classes |
obo:SO_0000252c |
| URI | http://purl.obolibrary.org/obo/SO_0002129 |
|---|---|
| Super-classes |
obo:SO_0000253c |
| URI | http://purl.obolibrary.org/obo/SO_0002130 |
|---|---|
| Super-classes |
obo:SO_0000234c |
| URI | http://purl.obolibrary.org/obo/SO_0002131 |
|---|---|
| Super-classes |
obo:SO_0001877c |
| URI | http://purl.obolibrary.org/obo/SO_0002132 |
|---|---|
| Super-classes |
obo:SO_0001877c |
| URI | http://purl.obolibrary.org/obo/SO_0002133 |
|---|---|
| Description |
These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT. |
| Super-classes |
obo:SO_0002121c |
| Sub-classes |
obo:SO_0002137c obo:SO_0002134c obo:SO_0002135c obo:SO_0002136c |
| URI | http://purl.obolibrary.org/obo/SO_0002134 |
|---|---|
| Description |
These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT. |
| Super-classes |
obo:SO_0002133c |
| URI | http://purl.obolibrary.org/obo/SO_0002135 |
|---|---|
| Description |
These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT. |
| Super-classes |
obo:SO_0002133c |
| URI | http://purl.obolibrary.org/obo/SO_0002136 |
|---|---|
| Description |
These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT. |
| Super-classes |
obo:SO_0002133c |
| URI | http://purl.obolibrary.org/obo/SO_0002137 |
|---|---|
| Description |
These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT. |
| Super-classes |
obo:SO_0002133c |
| URI | http://purl.obolibrary.org/obo/SO_0002138 |
|---|---|
| Super-classes |
obo:SO_0000673c |
| Sub-classes |
obo:SO_0002139c |
| URI | http://purl.obolibrary.org/obo/SO_0002139 |
|---|---|
| Super-classes |
obo:SO_0002138c |
| URI | http://purl.obolibrary.org/obo/SO_0002140 |
|---|---|
| Super-classes |
obo:SO_0000296c |
| URI | http://purl.obolibrary.org/obo/SO_0002141 |
|---|---|
| Super-classes |
obo:SO_0000296c |
| URI | http://purl.obolibrary.org/obo/SO_0002142 |
|---|---|
| Super-classes |
obo:SO_0001702c |
| Sub-classes |
obo:SO_0001938c obo:SO_0002144c obo:SO_0001944c |
| URI | http://purl.obolibrary.org/obo/SO_0002143 |
|---|---|
| Super-classes |
obo:SO_0001702c |
| Sub-classes |
obo:SO_0001946c obo:SO_0002164c obo:SO_0001942c obo:SO_0001940c obo:SO_0001937c |
| URI | http://purl.obolibrary.org/obo/SO_0002144 |
|---|---|
| Super-classes |
obo:SO_0002142c |
| Sub-classes |
obo:SO_0002147c obo:SO_0002149c obo:SO_0002145c obo:SO_0002148c obo:SO_0002146c |
| URI | http://purl.obolibrary.org/obo/SO_0002145 |
|---|---|
| Super-classes |
obo:SO_0002144c |
| URI | http://purl.obolibrary.org/obo/SO_0002146 |
|---|---|
| Super-classes |
obo:SO_0002144c |
| URI | http://purl.obolibrary.org/obo/SO_0002147 |
|---|---|
| Super-classes |
obo:SO_0002144c |
| URI | http://purl.obolibrary.org/obo/SO_0002148 |
|---|---|
| Super-classes |
obo:SO_0002144c |
| URI | http://purl.obolibrary.org/obo/SO_0002149 |
|---|---|
| Super-classes |
obo:SO_0002144c |
| URI | http://purl.obolibrary.org/obo/SO_0002150 |
|---|---|
| Super-classes |
obo:SO_0002027c |
| URI | http://purl.obolibrary.org/obo/SO_0002151 |
|---|---|
| Super-classes |
obo:SO_0002027c |
| URI | http://purl.obolibrary.org/obo/SO_0002152 |
|---|---|
| Super-classes |
obo:SO_0001564c |
| URI | http://purl.obolibrary.org/obo/SO_0002153 |
|---|---|
| Super-classes |
obo:SO_0001564c |
| URI | http://purl.obolibrary.org/obo/SO_0002154 |
|---|---|
| Super-classes |
obo:SO_0000298c |
| URI | http://purl.obolibrary.org/obo/SO_0002155 |
|---|---|
| Super-classes |
obo:SO_0000298c |
| URI | http://purl.obolibrary.org/obo/SO_0002156 |
|---|---|
| Description |
Requested by Antonia Lock |
| Super-classes |
obo:SO_0001659c |
| URI | http://purl.obolibrary.org/obo/SO_0002157 |
|---|---|
| Super-classes |
obo:SO_0001984c |
| URI | http://purl.obolibrary.org/obo/SO_0002158 |
|---|---|
| Super-classes |
obo:SO_0001984c |
| URI | http://purl.obolibrary.org/obo/SO_0002159 |
|---|---|
| Super-classes |
obo:SO_0100017c |
| URI | http://purl.obolibrary.org/obo/SO_0002160 |
|---|---|
| Super-classes |
obo:SO_0001537c |
| Sub-classes |
obo:SO_0002161c obo:SO_0001563c |
| URI | http://purl.obolibrary.org/obo/SO_0002161 |
|---|---|
| Super-classes |
obo:SO_0002160c |
| Sub-classes |
obo:SO_0002163c obo:SO_0002162c |
| URI | http://purl.obolibrary.org/obo/SO_0002162 |
|---|---|
| Super-classes |
obo:SO_0002161c |
| Sub-classes |
obo:SO_0002165c |
| URI | http://purl.obolibrary.org/obo/SO_0002163 |
|---|---|
| Super-classes |
obo:SO_0002161c |
| URI | http://purl.obolibrary.org/obo/SO_0002164 |
|---|---|
| Super-classes |
obo:SO_0002143c |
| URI | http://purl.obolibrary.org/obo/SO_0002165 |
|---|---|
| Super-classes |
obo:SO_0002162c |
| URI | http://purl.obolibrary.org/obo/SO_0002166 |
|---|---|
| Super-classes |
obo:SO_0000276c |
| URI | http://purl.obolibrary.org/obo/SO_0002167 |
|---|---|
| Super-classes |
obo:SO_0000276c |
| URI | http://purl.obolibrary.org/obo/SO_0002168 |
|---|---|
| Super-classes |
obo:SO_0000836c |
| Restrictions |
so:part_ofop some obo:SO_0000234c |
| URI | http://purl.obolibrary.org/obo/SO_0002169 |
|---|---|
| Super-classes |
obo:SO_0001568c |
| URI | http://purl.obolibrary.org/obo/SO_0002170 |
|---|---|
| Super-classes |
obo:SO_0001630c |
| URI | http://purl.obolibrary.org/obo/SO_0002171 |
|---|---|
| Description |
This definition is from GO:0061820 telomeric D-loop disassembly. |
| Super-classes |
obo:SO_0000296c |
| URI | http://purl.obolibrary.org/obo/SO_0002172 |
|---|---|
| Super-classes |
obo:SO_0000413c |
| Sub-classes |
obo:SO_0002173c obo:SO_0002176c obo:SO_0002175c obo:SO_0002174c |
| URI | http://purl.obolibrary.org/obo/SO_0002173 |
|---|---|
| Super-classes |
obo:SO_0002172c |
| URI | http://purl.obolibrary.org/obo/SO_0002174 |
|---|---|
| Super-classes |
obo:SO_0002172c |
| URI | http://purl.obolibrary.org/obo/SO_0002175 |
|---|---|
| Super-classes |
obo:SO_0002172c |
| Sub-classes |
obo:SO_0002177c |
| URI | http://purl.obolibrary.org/obo/SO_0002176 |
|---|---|
| Super-classes |
obo:SO_0002172c |
| Sub-classes |
obo:SO_0002178c obo:SO_0002179c |
| URI | http://purl.obolibrary.org/obo/SO_0002177 |
|---|---|
| Super-classes |
obo:SO_0002175c |
| URI | http://purl.obolibrary.org/obo/SO_0002178 |
|---|---|
| Super-classes |
obo:SO_0002176c |
| URI | http://purl.obolibrary.org/obo/SO_0002179 |
|---|---|
| Super-classes |
obo:SO_0002176c |
| URI | http://purl.obolibrary.org/obo/SO_0002180 |
|---|---|
| Super-classes |
obo:SO_0001263c |
| Sub-classes |
obo:SO_0002181c |
| URI | http://purl.obolibrary.org/obo/SO_0002181 |
|---|---|
| Super-classes |
obo:SO_0002180c |
| URI | http://purl.obolibrary.org/obo/SO_0002182 |
|---|---|
| Super-classes |
obo:SO_0002127c |
| URI | http://purl.obolibrary.org/obo/SO_0002183 |
|---|---|
| Super-classes |
obo:SO_0002127c |
| URI | http://purl.obolibrary.org/obo/SO_0002184 |
|---|---|
| Super-classes |
obo:SO_0002127c |
| URI | http://purl.obolibrary.org/obo/SO_0002185 |
|---|---|
| Description |
This is a gencode term. See GitHub Issue #408. Synonyms "bidirectional promoter lncRNA gene" and "bidirectional_promoter_lncRNA_gene" added 23 April 2021 by David Sant. See GitHub Issue #506. |
| Super-classes |
obo:SO_0002127c |
| URI | http://purl.obolibrary.org/obo/SO_0002186 |
|---|---|
| Super-classes |
obo:SO_0001411c |
| URI | http://purl.obolibrary.org/obo/SO_0002187 |
|---|---|
| Super-classes |
obo:SO_0001837c |
| Restrictions |
so:derives_fromop some obo:SO_0002268c |
| URI | http://purl.obolibrary.org/obo/SO_0002188 |
|---|---|
| Description |
A functional_gene_region is a sequence feature that resides within a gene. But it is typically the corresponding region of translated/transcribed sequence in a gene product, that performs the molecular function qualifying it as a functional_gene_region. Here, a functional_gene_region must contribute directly to the molecular function of the gene product - regions that code for purely structural elements in a gene product that connect such directly functional elements together are not considered functional_gene_regions. Examples of regions considered 'functional' include those encoding enzymatic activity, binding activity, regions required for localization or membrane association, channel-forming regions, and signal peptides or other elements critical for processing of a gene product. In addition, regions that function at the genomic/DNA level are also included - e.g. regions of sequence known to be critical for binding transcription or splicing factors. |
| Super-classes |
obo:SO_0000831c |
| URI | http://purl.obolibrary.org/obo/SO_0002189 |
|---|---|
| Super-classes |
obo:SO_0001759c |
| URI | http://purl.obolibrary.org/obo/SO_0002190 |
|---|---|
| Description |
Insulator is included as a related synonym since this is used to refer to insulator in the literature (NCBI:cf). |
| Super-classes |
obo:SO_0000627c |
| URI | http://purl.obolibrary.org/obo/SO_0002191 |
|---|---|
| Description |
Moved from is_a regulatory_region (SO:0005836) to is_a epigenetically_modified_region (SO:0001720) on 11 Feb 2021. GREEKC members pointed out that this would be a more appropriate location. See GitHub Issue #530. |
| Super-classes |
obo:SO_0001720c |
| URI | http://purl.obolibrary.org/obo/SO_0002192 |
|---|---|
| Super-classes |
obo:SO_0000657c |
| URI | http://purl.obolibrary.org/obo/SO_0002193 |
|---|---|
| Super-classes |
obo:SO_0000777c |
| URI | http://purl.obolibrary.org/obo/SO_0002194 |
|---|---|
| Super-classes |
obo:SO_0000777c |
| URI | http://purl.obolibrary.org/obo/SO_0002195 |
|---|---|
| Super-classes |
obo:SO_0000777c |
| URI | http://purl.obolibrary.org/obo/SO_0002196 |
|---|---|
| Super-classes |
obo:SO_0000777c |
| URI | http://purl.obolibrary.org/obo/SO_0002197 |
|---|---|
| Super-classes |
obo:SO_0000778c |
| URI | http://purl.obolibrary.org/obo/SO_0002198 |
|---|---|
| Super-classes |
obo:SO_0000778c |
| URI | http://purl.obolibrary.org/obo/SO_0002199 |
|---|---|
| Super-classes |
obo:SO_0000778c |
| URI | http://purl.obolibrary.org/obo/SO_0002200 |
|---|---|
| Super-classes |
obo:SO_0000778c |
| URI | http://purl.obolibrary.org/obo/SO_0002201 |
|---|---|
| Super-classes |
obo:SO_0000657c |
| URI | http://purl.obolibrary.org/obo/SO_0002202 |
|---|---|
| Super-classes |
obo:SO_0000705c |
| URI | http://purl.obolibrary.org/obo/SO_0002203 |
|---|---|
| Super-classes |
obo:SO_0000296c |
| URI | http://purl.obolibrary.org/obo/SO_0002204 |
|---|---|
| Super-classes |
obo:SO_0000699c |
| Sub-classes |
obo:SO_0001688c |
| URI | http://purl.obolibrary.org/obo/SO_0002205 |
|---|---|
| Description |
Moved from transcription_regulatory_region (SO:0001679) to transcriptional_cis_regulatory_region (SO:0001055) by Dave Sant on Feb 11, 2021 when transcription_regulatory_region was merged into transcriptional_cis_regulatory_region to be consistent with GO and reduce redundancy as part of the GREEKC consortium. See GitHub Issue #527. |
| Super-classes |
obo:SO_0001055c |
| URI | http://purl.obolibrary.org/obo/SO_0002206 |
|---|---|
| Description |
Terms such as genomic_DNA or mRNA can be used to describe a sequence source. |
| Super-classes |
obo:SO_0000400c |
| URI | http://purl.obolibrary.org/obo/SO_0002207 |
|---|---|
| Super-classes |
obo:SO_0001979c |
| URI | http://purl.obolibrary.org/obo/SO_0002208 |
|---|---|
| Super-classes |
obo:SO_0000673c |
| URI | http://purl.obolibrary.org/obo/SO_0002209 |
|---|---|
| Description |
Requested by Bayer Crop Science, March 2018 |
| Super-classes |
obo:SO_0000149c |
| URI | http://purl.obolibrary.org/obo/SO_0002210 |
|---|---|
| Description |
Requested by Bayer Crop Science, March 2018 |
| Super-classes |
obo:SO_0001019c |
| URI | http://purl.obolibrary.org/obo/SO_0002211 |
|---|---|
| Super-classes |
obo:SO_0000155c |
| URI | http://purl.obolibrary.org/obo/SO_0002212 |
|---|---|
| Super-classes |
obo:SO_0000155c |
| URI | http://purl.obolibrary.org/obo/SO_0002213 |
|---|---|
| Super-classes |
obo:SO_0000951c |
| URI | http://purl.obolibrary.org/obo/SO_0002214 |
|---|---|
| Super-classes |
obo:SO_0001992c |
| URI | http://purl.obolibrary.org/obo/SO_0002215 |
|---|---|
| Super-classes |
obo:SO_0000713c |
| URI | http://purl.obolibrary.org/obo/SO_0002216 |
|---|---|
| Super-classes |
obo:SO_0001659c |
| URI | http://purl.obolibrary.org/obo/SO_0002217 |
|---|---|
| Description |
This term is used when there is a change that is either an insertion or a deletion but it is unknown which event occurred. |
| Super-classes |
obo:SO_0001059c |
| URI | http://purl.obolibrary.org/obo/SO_0002218 |
|---|---|
| Description |
Added after request from Lea Starita, lea.starita@gmail.com from the NCBI Feb 2019. |
| Super-classes |
obo:SO_0001536c |
| Sub-classes |
obo:SO_0002320c obo:SO_0001786c obo:SO_0001538c obo:SO_0002054c obo:SO_0002053c obo:SO_0002055c obo:SO_0001773c obo:SO_0002319c obo:SO_0001539c obo:SO_0002052c |
| URI | http://purl.obolibrary.org/obo/SO_0002219 |
|---|---|
| Description |
Added after request from Lea Starita, lea.starita@gmail.com from the NCBI Feb 2019. |
| Super-classes |
obo:SO_0001536c |
| URI | http://purl.obolibrary.org/obo/SO_0002220 |
|---|---|
| Description |
Added after request from Lea Starita, lea.starita@gmail.com from the NCBI Feb 2019. |
| Super-classes |
obo:SO_0001536c |
| URI | http://purl.obolibrary.org/obo/SO_0002221 |
|---|---|
| Super-classes |
obo:SO_0000167c |
| Sub-classes |
obo:SO_0000170c obo:SO_0000169c obo:SO_0000171c |
| URI | http://purl.obolibrary.org/obo/SO_0002222 |
|---|---|
| Super-classes |
obo:SO_0000167c |
| Sub-classes |
obo:SO_0000613c |
| URI | http://purl.obolibrary.org/obo/SO_0002223 |
|---|---|
| Description |
Updated by Evan Christensen on May 27, 2021 per github request https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/494 |
| Super-classes |
obo:SO_0005836c |
| URI | http://purl.obolibrary.org/obo/SO_0002224 |
|---|---|
| Description |
Added by Dave Sant on October 21, 2019 per github request https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/475 |
| Super-classes |
obo:SO_0000839c |
| URI | http://purl.obolibrary.org/obo/SO_0002225 |
|---|---|
| Description |
Added on October 30, 2019 as per request of Val Wood request on GitHub Issue# 476 https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/476 |
| Super-classes |
obo:SO_0002006c |
| URI | http://purl.obolibrary.org/obo/SO_0002226 |
|---|---|
| Super-classes |
obo:SO_0000603c |
| URI | http://purl.obolibrary.org/obo/SO_0002227 |
|---|---|
| Description |
Added as per request by Edward Wallace GitHub issue #480 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/480) |
| Super-classes |
obo:SO_0000316c |
| Sub-classes |
obo:SO_0002228c obo:SO_0002229c |
| URI | http://purl.obolibrary.org/obo/SO_0002228 |
|---|---|
| Description |
Added as per request by Edward Wallace GitHub issue #480 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/480) |
| Super-classes |
obo:SO_0002227c |
| URI | http://purl.obolibrary.org/obo/SO_0002229 |
|---|---|
| Description |
Added as per request by Edward Wallace GitHub issue #480 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/480) |
| Super-classes |
obo:SO_0002227c |
| URI | http://purl.obolibrary.org/obo/SO_0002230 |
|---|---|
| Description |
Added as per request by Val Wood GitHub issue #479 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/479) |
| Super-classes |
obo:SO_0100017c |
| URI | http://purl.obolibrary.org/obo/SO_0002231 |
|---|---|
| Description |
Added as per request by John T. Sexton GitHub issue #470 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/470) |
| Super-classes |
obo:SO_0000374c |
| Restrictions |
so:has_qualityop some obo:SO_0001977c |
| URI | http://purl.obolibrary.org/obo/SO_0002232 |
|---|---|
| Description |
Added as per request by Bryan Bartley GitHub issue #468 and #402 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/468) |
| Super-classes |
obo:SO_0001645c |
| URI | http://purl.obolibrary.org/obo/SO_0002233 |
|---|---|
| Description |
Added as per request by Val Wood GitHub issue #483 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/483) |
| Super-classes |
obo:SO_0000409c |
| Restrictions |
so:member_ofop some obo:SO_0000830c |
| URI | http://purl.obolibrary.org/obo/SO_0002234 |
|---|---|
| Description |
Added as per request by Val Wood GitHub issue #455 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/455) |
| Super-classes |
obo:SO_0000837c |
| Restrictions |
so:part_ofop some obo:SO_0000205c |
| URI | http://purl.obolibrary.org/obo/SO_0002235 |
|---|---|
| Description |
Added as per request GitHub issue #434 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/434) |
| Super-classes |
obo:SO_0001093c |
| URI | http://purl.obolibrary.org/obo/SO_0002236 |
|---|---|
| Description |
Added as per request by Antonia Lock GitHub issue #472 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/472) |
| Super-classes |
obo:SO_0001637c |
| Restrictions |
so:derives_fromop some obo:SO_0000407c |
| URI | http://purl.obolibrary.org/obo/SO_0002237 |
|---|---|
| Description |
Added as per request by Antonia Lock GitHub issue #472 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/472) |
| Super-classes |
obo:SO_0001637c |
| Restrictions |
so:derives_fromop some obo:SO_0001000c |
| URI | http://purl.obolibrary.org/obo/SO_0002238 |
|---|---|
| Description |
Added as per request by Antonia Lock GitHub issue #472 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/472) |
| Super-classes |
obo:SO_0001637c |
| Restrictions |
so:derives_fromop some obo:SO_0000652c |
| URI | http://purl.obolibrary.org/obo/SO_0002239 |
|---|---|
| Description |
Added as per request by Antonia Lock GitHub issue #472 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/472) |
| Super-classes |
obo:SO_0001637c |
| Restrictions |
so:derives_fromop some obo:SO_0000653c |
| URI | http://purl.obolibrary.org/obo/SO_0002240 |
|---|---|
| Description |
Added as per request by Antonia Lock GitHub issue #472 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/472) |
| Super-classes |
obo:SO_0001637c |
| Restrictions |
so:derives_fromop some obo:SO_0000375c |
| URI | http://purl.obolibrary.org/obo/SO_0002241 |
|---|---|
| Description |
Added as per request by Antonia Lock GitHub issue #472 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/472) |
| Super-classes |
obo:SO_0001637c |
| Restrictions |
so:derives_fromop some obo:SO_0001171c |
| URI | http://purl.obolibrary.org/obo/SO_0002242 |
|---|---|
| Description |
Added as per request by Antonia Lock GitHub issue #472 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/472) |
| Super-classes |
obo:SO_0001637c |
| Restrictions |
so:derives_fromop some obo:SO_0001002c |
| URI | http://purl.obolibrary.org/obo/SO_0002243 |
|---|---|
| Description |
Added as per request by Antonia Lock GitHub issue #472 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/472) |
| Super-classes |
obo:SO_0001637c |
| Restrictions |
so:derives_fromop some obo:SO_0001001c |
| URI | http://purl.obolibrary.org/obo/SO_0002244 |
|---|---|
| Description |
Added as per request from the Illumina group |
| Super-classes |
obo:SO_0001576c |
| Sub-classes |
obo:SO_0002245c obo:SO_0002246c |
| URI | http://purl.obolibrary.org/obo/SO_0002245 |
|---|---|
| Description |
Added as per request from the Illumina group |
| Super-classes |
obo:SO_0002244c |
| URI | http://purl.obolibrary.org/obo/SO_0002246 |
|---|---|
| Description |
Added as per request from the Illumina group |
| Super-classes |
obo:SO_0002244c |
| URI | http://purl.obolibrary.org/obo/SO_0002247 |
|---|---|
| Description |
Added as per request from GitHub Issue #485 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/485) |
| Super-classes |
obo:SO_0000655c |
| Sub-classes |
obo:SO_0000274c obo:SO_0000275c obo:SO_0000370c obo:SO_0000253c |
| URI | http://purl.obolibrary.org/obo/SO_0002248 |
|---|---|
| Description |
Added as per request from GitHub Issue #478 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/478) |
| Super-classes |
obo:SO_0001410c |
| URI | http://purl.obolibrary.org/obo/SO_0002249 |
|---|---|
| Description |
Added as per request from GitHub Issue #484 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/484) |
| Super-classes |
obo:SO_0000851c |
| URI | http://purl.obolibrary.org/obo/SO_0002250 |
|---|---|
| Description |
Added as per request from GitHub Issue #484 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/484) |
| Super-classes |
obo:SO_0000851c |
| URI | http://purl.obolibrary.org/obo/SO_0002251 |
|---|---|
| Description |
Added as per request from GitHub Issue #484 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/484) |
| Super-classes |
obo:SO_0000851c |
| URI | http://purl.obolibrary.org/obo/SO_0002252 |
|---|---|
| Description |
Added as per request from GitHub Issue #484 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/484) |
| Super-classes |
obo:SO_0000851c |
| URI | http://purl.obolibrary.org/obo/SO_0002253 |
|---|---|
| Description |
Added as per request from GitHub Issue #451 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/451) |
| Super-classes |
obo:SO_0000122c |
| Restrictions |
so:part_ofop some obo:SO_0000313c |
| Sub-classes |
obo:SO_0002254c obo:SO_0002255c |
| URI | http://purl.obolibrary.org/obo/SO_0002254 |
|---|---|
| Description |
Added as per request from GitHub Issue #451 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/451) |
| Super-classes |
obo:SO_0002253c |
| URI | http://purl.obolibrary.org/obo/SO_0002255 |
|---|---|
| Description |
Added as per request from GitHub Issue #451 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/451) |
| Super-classes |
obo:SO_0002253c |
| Sub-classes |
obo:SO_0002256c |
| URI | http://purl.obolibrary.org/obo/SO_0002256 |
|---|---|
| Description |
Added as per request from GitHub Issue #451 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/451) |
| Super-classes |
obo:SO_0002255c |
| URI | http://purl.obolibrary.org/obo/SO_0002257 |
|---|---|
| Description |
Added as per request from GitHub Issue #487 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/487) |
| Super-classes |
obo:SO_0000657c |
| URI | http://purl.obolibrary.org/obo/SO_0002258 |
|---|---|
| Description |
Requested by Antonia Locke, (Pombe) as per GitHub Issue Request #439 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/439) |
| Super-classes |
obo:SO_0000713c |
| URI | http://purl.obolibrary.org/obo/SO_0002259 |
|---|---|
| Description |
Added as per GitHub Issue Request #450 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/450) |
| Super-classes |
obo:SO_0001411c |
| Restrictions |
so:part_ofop some obo:SO_0000205c so:has_partop some obo:SO_0000553c |
| URI | http://purl.obolibrary.org/obo/SO_0002260 |
|---|---|
| Description |
Added as per GitHub Issue Request #429 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/429) |
| Super-classes |
obo:SO_0000186c |
| URI | http://purl.obolibrary.org/obo/SO_0002261 |
|---|---|
| Description |
Added as per GitHub Issue Request #429 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/429) |
| Super-classes |
obo:SO_0000186c |
| URI | http://purl.obolibrary.org/obo/SO_0002262 |
|---|---|
| Description |
Added as per GitHub Issue Request #419 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/419) |
| Super-classes |
obo:SO_0000830c |
| URI | http://purl.obolibrary.org/obo/SO_0002263 |
|---|---|
| Description |
Added as per GitHub Issue Request #419 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/419) |
| Super-classes |
obo:SO_0000830c |
| URI | http://purl.obolibrary.org/obo/SO_0002264 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000186c |
| URI | http://purl.obolibrary.org/obo/SO_0002265 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000186c |
| URI | http://purl.obolibrary.org/obo/SO_0002266 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000186c |
| URI | http://purl.obolibrary.org/obo/SO_0002267 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000186c |
| URI | http://purl.obolibrary.org/obo/SO_0002268 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000186c |
| URI | http://purl.obolibrary.org/obo/SO_0002269 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000194c |
| URI | http://purl.obolibrary.org/obo/SO_0002270 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000194c |
| URI | http://purl.obolibrary.org/obo/SO_0002271 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000194c |
| URI | http://purl.obolibrary.org/obo/SO_0002272 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000194c |
| URI | http://purl.obolibrary.org/obo/SO_0002273 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000194c |
| URI | http://purl.obolibrary.org/obo/SO_0002274 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000206c |
| URI | http://purl.obolibrary.org/obo/SO_0002275 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000206c |
| URI | http://purl.obolibrary.org/obo/SO_0002276 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000206c |
| URI | http://purl.obolibrary.org/obo/SO_0002277 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000182c |
| URI | http://purl.obolibrary.org/obo/SO_0002278 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000208c |
| URI | http://purl.obolibrary.org/obo/SO_0002279 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000208c |
| URI | http://purl.obolibrary.org/obo/SO_0002280 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000208c |
| URI | http://purl.obolibrary.org/obo/SO_0002281 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000208c |
| URI | http://purl.obolibrary.org/obo/SO_0002282 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000208c |
| URI | http://purl.obolibrary.org/obo/SO_0002283 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000208c |
| URI | http://purl.obolibrary.org/obo/SO_0002284 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000208c |
| URI | http://purl.obolibrary.org/obo/SO_0002285 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000208c |
| URI | http://purl.obolibrary.org/obo/SO_0002286 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000189c |
| Sub-classes |
obo:SO_0002289c obo:SO_0002288c obo:SO_0002287c |
| URI | http://purl.obolibrary.org/obo/SO_0002287 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0002286c |
| URI | http://purl.obolibrary.org/obo/SO_0002288 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0002286c |
| URI | http://purl.obolibrary.org/obo/SO_0002289 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0002286c |
| URI | http://purl.obolibrary.org/obo/SO_0002290 |
|---|---|
| Description |
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488) |
| Super-classes |
obo:SO_0000189c |
| URI | http://purl.obolibrary.org/obo/SO_0002291 |
|---|---|
| Description |
Added as per GitHub Issue Request #490 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/490) and GitHub Issue Request #391 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/391) |
| Super-classes |
obo:SO_0000655c |
| URI | http://purl.obolibrary.org/obo/SO_0002292 |
|---|---|
| Description |
Added as per GitHub Issue Request #490 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/490) and GitHub Issue Request #391 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/391) |
| Super-classes |
obo:SO_0000234c |
| URI | http://purl.obolibrary.org/obo/SO_0002293 |
|---|---|
| Description |
Added as per GitHub Issue Request #417 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/417) from INSDC |
| Super-classes |
obo:SO_0000296c |
| Restrictions |
so:has_originop some obo:SO_0000737c |
| Sub-classes |
obo:SO_0002294c |
| URI | http://purl.obolibrary.org/obo/SO_0002294 |
|---|---|
| Description |
Added as per request by Terence Murphy (INSDC) for GitHub Issue #417 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/417) |
| Super-classes |
obo:SO_0000297c obo:SO_0002293c |
| URI | http://purl.obolibrary.org/obo/SO_0002295 |
|---|---|
| Description |
Added as per Mejia-Almonte et.al PMID:32665585 |
| Super-classes |
obo:SO_0000235c |
| URI | http://purl.obolibrary.org/obo/SO_0002296 |
|---|---|
| Description |
Added as per Mejia-Almonte et.al PMID:32665585. Moved from transcription_regulatory_region (SO:0001679) to transcriptional_cis_regulatory_region (SO:0001055) by Dave Sant on Feb 11, 2021 when transcription_regulatory_region was merged into transcriptional_cis_regulatory_region to be consistent with GO and reduce redundancy as part of the GREEKC consortium. See GitHub Issue #527. |
| Super-classes |
obo:SO_0001055c |
| Restrictions |
so:has_partop some obo:SO_0002295c |
| URI | http://purl.obolibrary.org/obo/SO_0002297 |
|---|---|
| Description |
Added as per Mejia-Almonte et.al PMID:32665585. Moved from transcription_regulatory_region (SO:0001679) to transcriptional_cis_regulatory_region (SO:0001055) by Dave Sant on Feb 11, 2021 when transcription_regulatory_region was merged into transcriptional_cis_regulatory_region to be consistent with GO and reduce redundancy as part of the GREEKC consortium. See GitHub Issue #527. |
| Super-classes |
obo:SO_0001055c |
| Restrictions |
so:has_partop some obo:SO_0002295c |
| URI | http://purl.obolibrary.org/obo/SO_0002298 |
|---|---|
| Description |
Added as per Mejia-Almonte et.al PMID:32665585 |
| Super-classes |
obo:SO_0000178c |
| URI | http://purl.obolibrary.org/obo/SO_0002299 |
|---|---|
| Description |
Added as per Mejia-Almonte et.al PMID:32665585 |
| Super-classes |
obo:SO_0000178c |
| URI | http://purl.obolibrary.org/obo/SO_0002300 |
|---|---|
| Description |
Added as per Mejia-Almonte et.al PMID:32665585 |
| Super-classes |
obo:SO_0001411c |
| Sub-classes |
obo:SO_0002301c |
| URI | http://purl.obolibrary.org/obo/SO_0002301 |
|---|---|
| Description |
Added as per Mejia-Almonte et.al PMID:32665585 |
| Super-classes |
obo:SO_0002300c |
| URI | http://purl.obolibrary.org/obo/SO_0002302 |
|---|---|
| Description |
Added as per Mejia-Almonte et.al PMID:32665585 |
| Super-classes |
obo:SO_1001284c |
| URI | http://purl.obolibrary.org/obo/SO_0002303 |
|---|---|
| Description |
Added as per Mejia-Almonte et.al PMID:32665585 |
| Super-classes |
obo:SO_1001284c |
| URI | http://purl.obolibrary.org/obo/SO_0002304 |
|---|---|
| Description |
Added by Dave to be consistent with other ontologies updated with GREEKC initiative. |
| Super-classes |
obo:SO_0001412c |
| URI | http://purl.obolibrary.org/obo/SO_0002305 |
|---|---|
| Description |
Added by Dave to be consistent with other ontologies updated with GREEKC initiative. |
| Super-classes |
obo:SO_0000699c |
| Restrictions |
so:part_ofop some obo:SO_0002304c |
| URI | http://purl.obolibrary.org/obo/SO_0002306 |
|---|---|
| Description |
Added by Dave to be consistent with other ontologies updated with GREEKC initiative. |
| Super-classes |
obo:SO_0000830c |
| URI | http://purl.obolibrary.org/obo/SO_0002307 |
|---|---|
| Description |
Added by Dave to be consistent with other ontologies updated with GREEKC initiative. DS updated defintion Feb 16, 2021. See GitHub Issue #534. |
| Super-classes |
obo:SO_0000830c |
| Restrictions |
so:overlapsop some obo:SO_0002304c |
| URI | http://purl.obolibrary.org/obo/SO_0002308 |
|---|---|
| Description |
Added by Dave to be consistent with other ontologies updated with GREEKC initiative. DS updated defintion Feb 16, 2021. See GitHub Issue #534. |
| Super-classes |
obo:SO_0000727c |
| Restrictions |
so:part_ofop some obo:SO_0002307c |
| URI | http://purl.obolibrary.org/obo/SO_0002309 |
|---|---|
| Description |
Added by Dave to be consistent with other ontologies updated with GREEKC initiative. |
| Super-classes |
obo:SO_0001659c |
| Restrictions |
so:part_ofop some obo:SO_0000167c |
| Sub-classes |
obo:SO_0001660c obo:SO_0000315c obo:SO_0002312c obo:SO_0002313c |
| URI | http://purl.obolibrary.org/obo/SO_0002310 |
|---|---|
| Description |
Added by Dave to be consistent with other ontologies updated with GREEKC initiative. |
| Super-classes |
obo:SO_0000167c |
| Restrictions |
so:part_ofop some obo:SO_0001431c |
| URI | http://purl.obolibrary.org/obo/SO_0002311 |
|---|---|
| Super-classes |
obo:SO_0000167c |
| Sub-classes |
obo:SO_0001204c |
| URI | http://purl.obolibrary.org/obo/SO_0002312 |
|---|---|
| Super-classes |
obo:SO_0002309c |
| Restrictions |
so:part_ofop some obo:SO_0002222c |
| Sub-classes |
obo:SO_0000176c obo:SO_0000175c |
| URI | http://purl.obolibrary.org/obo/SO_0002313 |
|---|---|
| Super-classes |
obo:SO_0002309c |
| Restrictions |
so:part_ofop some obo:SO_0002311c |
| URI | http://purl.obolibrary.org/obo/SO_0002314 |
|---|---|
| Description |
Added as per request from Ang Roberts as part of GenCC November 2020. See Issue Request #501 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/501) |
| Super-classes |
obo:SO_0001536c |
| Sub-classes |
obo:SO_0002316c obo:SO_0002315c |
| URI | http://purl.obolibrary.org/obo/SO_0002315 |
|---|---|
| Description |
Added as per request from Ang Roberts as part of GenCC November 2020. See Issue Request #501 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/501) |
| Super-classes |
obo:SO_0002314c |
| URI | http://purl.obolibrary.org/obo/SO_0002316 |
|---|---|
| Description |
Added as per request from Ang Roberts as part of GenCC November 2020. See Issue Request #501 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/501) |
| Super-classes |
obo:SO_0002314c |
| Sub-classes |
obo:SO_0002317c |
| URI | http://purl.obolibrary.org/obo/SO_0002317 |
|---|---|
| Description |
Added as per request from Ang Roberts as part of GenCC November 2020. See Issue Request #501 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/501) |
| Super-classes |
obo:SO_0002316c obo:SO_0002055c |
| URI | http://purl.obolibrary.org/obo/SO_0002318 |
|---|---|
| Description |
Added as per request from Ang Roberts as part of GenCC November 2020. See Issue Request #501 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/501) |
| Super-classes |
obo:SO_0001536c |
| URI | http://purl.obolibrary.org/obo/SO_0002319 |
|---|---|
| Description |
Added as per request from Ang Roberts as part of GenCC November 2020. |
| Super-classes |
obo:SO_0002218c |
| Sub-classes |
obo:SO_0002325c obo:SO_0002327c obo:SO_0002323c obo:SO_0002321c |
| URI | http://purl.obolibrary.org/obo/SO_0002320 |
|---|---|
| Description |
Added as per request from Ang Roberts as part of GenCC November 2020. |
| Super-classes |
obo:SO_0002218c |
| Sub-classes |
obo:SO_0002328c obo:SO_0002324c obo:SO_0002326c obo:SO_0002322c |
| URI | http://purl.obolibrary.org/obo/SO_0002321 |
|---|---|
| Description |
Added as per request from Ang Roberts as part of GenCC November 2020. |
| Super-classes |
obo:SO_0001587c obo:SO_0002319c |
| URI | http://purl.obolibrary.org/obo/SO_0002322 |
|---|---|
| Description |
Added as per request from Ang Roberts as part of GenCC November 2020. |
| Super-classes |
obo:SO_0001587c obo:SO_0002320c |
| URI | http://purl.obolibrary.org/obo/SO_0002323 |
|---|---|
| Description |
Added as per request from Ang Roberts as part of GenCC November 2020. |
| Super-classes |
obo:SO_0002319c obo:SO_0001589c |
| URI | http://purl.obolibrary.org/obo/SO_0002324 |
|---|---|
| Description |
Added as per request from Ang Roberts as part of GenCC November 2020. |
| Super-classes |
obo:SO_0002320c obo:SO_0001589c |
| URI | http://purl.obolibrary.org/obo/SO_0002325 |
|---|---|
| Description |
Added as per request from Ang Roberts as part of GenCC November 2020. |
| Super-classes |
obo:SO_0002319c obo:SO_0001575c |
| URI | http://purl.obolibrary.org/obo/SO_0002326 |
|---|---|
| Description |
Added as per request from Ang Roberts as part of GenCC November 2020. |
| Super-classes |
obo:SO_0002320c obo:SO_0001575c |
| URI | http://purl.obolibrary.org/obo/SO_0002327 |
|---|---|
| Description |
Added as per request from Ang Roberts as part of GenCC November 2020. |
| Super-classes |
obo:SO_0002319c obo:SO_0001574c |
| URI | http://purl.obolibrary.org/obo/SO_0002328 |
|---|---|
| Description |
Added as per request from Ang Roberts as part of GenCC November 2020. |
| Super-classes |
obo:SO_0002320c obo:SO_0001574c |
| URI | http://purl.obolibrary.org/obo/SO_0002329 |
|---|---|
| Description |
Added along with the update to the definition of transaltional_frameshift SO:0001210 Feb 2021, brought to our attention by Terrence Murphy of INSDC. See GitHub Issue #522. |
| Super-classes |
obo:SO_0001210c |
| URI | http://purl.obolibrary.org/obo/SO_0002330 |
|---|---|
| Description |
Added along with the update to the definition of transaltional_frameshift SO:0001210 Feb 2021, brought to our attention by Terrence Murphy of INSDC. See GitHub Issue #522. |
| Super-classes |
obo:SO_0001210c |
| URI | http://purl.obolibrary.org/obo/SO_0002331 |
|---|---|
| Description |
Added as part of GREEKC terms. See GitHub Issues #531 & #534. |
| Super-classes |
obo:SO_0001411c |
| Restrictions |
so:overlapsop some obo:SO_0001720c |
| Sub-classes |
obo:SO_0000322c |
| URI | http://purl.obolibrary.org/obo/SO_0002332 |
|---|---|
| Description |
Added as part of GREEKC terms to differentiate between inherited and not inherited epigenetic changes. See GitHub Issue #532. |
| Super-classes |
obo:SO_0001720c |
| Restrictions |
so:has_qualityop some obo:SO_0000133c |
| URI | http://purl.obolibrary.org/obo/SO_0002333 |
|---|---|
| Description |
Added as per GitHub request #537. |
| Super-classes |
obo:SO_0000319c |
| URI | http://purl.obolibrary.org/obo/SO_0002334 |
|---|---|
| Description |
Added as per GitHub request #537. |
| Super-classes |
obo:SO_0000319c |
| URI | http://purl.obolibrary.org/obo/SO_0002335 |
|---|---|
| Description |
Added as per GitHub request #537. |
| Super-classes |
obo:SO_0000319c |
| URI | http://purl.obolibrary.org/obo/SO_0002336 |
|---|---|
| Description |
Added as a request from FlyBase. See GitHub Issue #507 |
| Super-classes |
obo:SO_0001637c |
| URI | http://purl.obolibrary.org/obo/SO_0002337 |
|---|---|
| Description |
Added as a request from FlyBase. See GitHub Issue #507 |
| Super-classes |
obo:SO_0000651c |
| URI | http://purl.obolibrary.org/obo/SO_0002338 |
|---|---|
| Description |
Added as a request from FlyBase. See GitHub Issue #508 |
| Super-classes |
obo:SO_0000274c |
| URI | http://purl.obolibrary.org/obo/SO_0002339 |
|---|---|
| Description |
Added as a request from FlyBase. See GitHub Issue #510 |
| Super-classes |
obo:SO_0001267c |
| URI | http://purl.obolibrary.org/obo/SO_0002340 |
|---|---|
| Description |
Added as a request from FlyBase. See GitHub Issue #512 |
| Super-classes |
obo:SO_0000655c |
| URI | http://purl.obolibrary.org/obo/SO_0002341 |
|---|---|
| Description |
Added as a request from FlyBase. See GitHub Issue #512 |
| Super-classes |
obo:SO_0001263c |
| URI | http://purl.obolibrary.org/obo/SO_0002342 |
|---|---|
| Description |
Added as a request from FlyBase to make the ncRNA_gene branch in SO mirror the ncRNA branch. See GitHub Issue #514 |
| Super-classes |
obo:SO_0001263c |
| Sub-classes |
obo:SO_0001268c obo:SO_0001271c obo:SO_0001267c obo:SO_0001638c obo:SO_0001272c obo:SO_0001265c |
| URI | http://purl.obolibrary.org/obo/SO_0005836 |
|---|---|
| Super-classes |
obo:SO_0000831c |
| Sub-classes |
obo:SO_0001055c obo:SO_0002223c obo:SO_0001682c obo:SO_0001680c obo:SO_0001681c obo:SO_0001720c |
| URI | http://purl.obolibrary.org/obo/SO_0005837 |
|---|---|
| Super-classes |
obo:SO_0000232c |
| URI | http://purl.obolibrary.org/obo/SO_0005841 |
|---|---|
| Description |
Has RNA 2'-O-ribose methylation guide activity (GO:0030561). |
| Super-classes |
obo:SO_0000593c |
| Restrictions |
so:derives_fromop some obo:SO_0000580c |
| URI | http://purl.obolibrary.org/obo/SO_0005843 |
|---|---|
| Super-classes |
obo:SO_0000655c |
| Restrictions |
so:derives_fromop some obo:SO_0000582c |
| URI | http://purl.obolibrary.org/obo/SO_0005845 |
|---|---|
| Super-classes |
obo:SO_0000147c |
| URI | http://purl.obolibrary.org/obo/SO_0005847 |
|---|---|
| Super-classes |
obo:SO_0005848c |
| URI | http://purl.obolibrary.org/obo/SO_0005848 |
|---|---|
| Super-classes |
obo:SO_0000081c |
| Sub-classes |
obo:SO_0005847c |
| URI | http://purl.obolibrary.org/obo/SO_0005849 |
|---|---|
| Super-classes |
obo:SO_0000081c |
| URI | http://purl.obolibrary.org/obo/SO_0005850 |
|---|---|
| Super-classes |
obo:SO_0001655c |
| Restrictions |
so:part_ofop some obo:SO_0000186c |
| URI | http://purl.obolibrary.org/obo/SO_0005851 |
|---|---|
| Description |
This would include, for example, a cluster of genes each encoding the major ribosomal RNAs and a cluster of histone gene subarrays. |
| Super-classes |
obo:SO_0005855c |
| URI | http://purl.obolibrary.org/obo/SO_0005852 |
|---|---|
| Description |
This would include, for example, a cluster of genes encoding different histones. |
| Super-classes |
obo:SO_0005855c |
| URI | http://purl.obolibrary.org/obo/SO_0005853 |
|---|---|
| Description |
This would include, for example, the mating type gene cassettes of S. cerevisiae. Gene cassettes usually exist as linear sequences as part of a larger DNA molecule, such as a chromosome or plasmid. |
| Super-classes |
obo:SO_0000704c |
| URI | http://purl.obolibrary.org/obo/SO_0005854 |
|---|---|
| Description |
This would include, for example, the arrays of non-functional VSG genes of Trypanosomes. |
| Super-classes |
obo:SO_0005855c |
| Restrictions |
so:has_partop some obo:SO_0005853c |
| Sub-classes |
obo:SO_0001984c |
| URI | http://purl.obolibrary.org/obo/SO_0005855 |
|---|---|
| Super-classes |
obo:SO_0001411c |
| Sub-classes |
obo:SO_0001789c obo:SO_0000178c obo:SO_0005854c obo:SO_1001284c obo:SO_0005851c obo:SO_0005852c |
| URI | http://purl.obolibrary.org/obo/SO_0005856 |
|---|---|
| Super-classes |
obo:SO_0000210c |
| URI | http://purl.obolibrary.org/obo/SO_0005857 |
|---|---|
| Super-classes |
obo:SO_0000253c |
| Restrictions |
so:derives_fromop some obo:SO_0005856c |
| URI | http://purl.obolibrary.org/obo/SO_0005858 |
|---|---|
| Super-classes |
obo:SO_0000330c |
| Restrictions |
so:has_qualityop some obo:SO_0000860c |
| URI | http://purl.obolibrary.org/obo/SO_0100001 |
|---|---|
| Description |
Range. |
| Super-classes |
obo:SO_0001067c |
| Sub-classes |
obo:SO_0100018c obo:SO_0100019c obo:SO_0100002c obo:SO_0001422c obo:SO_0001089c |
| URI | http://purl.obolibrary.org/obo/SO_0100002 |
|---|---|
| Description |
Range. |
| Super-classes |
obo:SO_0100001c |
| Sub-classes |
obo:SO_0001105c obo:SO_0100020c obo:SO_0001093c obo:SO_0001092c |
| URI | http://purl.obolibrary.org/obo/SO_0100003 |
|---|---|
| Super-classes |
obo:SO_0001070c |
| URI | http://purl.obolibrary.org/obo/SO_0100004 |
|---|---|
| Super-classes |
obo:SO_0001078c |
| URI | http://purl.obolibrary.org/obo/SO_0100005 |
|---|---|
| Super-classes |
obo:SO_0001078c |
| URI | http://purl.obolibrary.org/obo/SO_0100006 |
|---|---|
| Super-classes |
obo:SO_0001078c |
| URI | http://purl.obolibrary.org/obo/SO_0100007 |
|---|---|
| Super-classes |
obo:SO_0001078c |
| URI | http://purl.obolibrary.org/obo/SO_0100008 |
|---|---|
| Super-classes |
obo:SO_0001078c |
| URI | http://purl.obolibrary.org/obo/SO_0100009 |
|---|---|
| Super-classes |
obo:SO_0100011c |
| URI | http://purl.obolibrary.org/obo/SO_0100010 |
|---|---|
| Super-classes |
obo:SO_0000703c |
| URI | http://purl.obolibrary.org/obo/SO_0100011 |
|---|---|
| Description |
Range. |
| Super-classes |
obo:SO_0000839c |
| Restrictions |
so:part_ofop some obo:SO_0001063c |
| Sub-classes |
obo:SO_0100016c obo:SO_0001061c obo:SO_0001062c obo:SO_0100015c obo:SO_0100014c obo:SO_0001408c obo:SO_0000728c obo:SO_0100009c obo:SO_0000691c |
| URI | http://purl.obolibrary.org/obo/SO_0100012 |
|---|---|
| Super-classes |
obo:SO_0001078c |
| URI | http://purl.obolibrary.org/obo/SO_0100013 |
|---|---|
| Description |
Range. |
| Super-classes |
obo:SO_0000839c |
| URI | http://purl.obolibrary.org/obo/SO_0100014 |
|---|---|
| Super-classes |
obo:SO_0100011c |
| Restrictions |
so:part_ofop some obo:SO_0000418c |
| URI | http://purl.obolibrary.org/obo/SO_0100015 |
|---|---|
| Super-classes |
obo:SO_0100011c |
| Restrictions |
so:part_ofop some obo:SO_0000418c |
| URI | http://purl.obolibrary.org/obo/SO_0100016 |
|---|---|
| Super-classes |
obo:SO_0100011c |
| Restrictions |
so:part_ofop some obo:SO_0000418c |
| URI | http://purl.obolibrary.org/obo/SO_0100017 |
|---|---|
| Super-classes |
obo:SO_0001067c |
| Sub-classes |
obo:SO_0001807c obo:SO_0002159c obo:SO_0002230c obo:SO_0001805c |
| URI | http://purl.obolibrary.org/obo/SO_0100018 |
|---|---|
| Super-classes |
obo:SO_0100001c |
| URI | http://purl.obolibrary.org/obo/SO_0100019 |
|---|---|
| Super-classes |
obo:SO_0100001c |
| URI | http://purl.obolibrary.org/obo/SO_0100020 |
|---|---|
| Super-classes |
obo:SO_0100002c obo:SO_0001429c |
| URI | http://purl.obolibrary.org/obo/SO_0100021 |
|---|---|
| Super-classes |
obo:SO_0000839c |
| Sub-classes |
obo:SO_0000417c obo:SO_0001067c obo:SO_0001068c |
| URI | http://purl.obolibrary.org/obo/SO_1000002 |
|---|---|
| Super-classes |
obo:SO_0001411c obo:SO_0001059c |
| Sub-classes |
obo:SO_1000005c obo:SO_0002007c obo:SO_0001483c |
| URI | http://purl.obolibrary.org/obo/SO_1000005 |
|---|---|
| Super-classes |
obo:SO_1000002c |
| URI | http://purl.obolibrary.org/obo/SO_1000008 |
|---|---|
| Super-classes |
obo:SO_0001483c |
| URI | http://purl.obolibrary.org/obo/SO_1000009 |
|---|---|
| Super-classes |
obo:SO_0001483c |
| Sub-classes |
obo:SO_1000010c obo:SO_1000014c |
| URI | http://purl.obolibrary.org/obo/SO_1000010 |
|---|---|
| Super-classes |
obo:SO_1000009c |
| Sub-classes |
obo:SO_1000013c obo:SO_1000011c |
| URI | http://purl.obolibrary.org/obo/SO_1000011 |
|---|---|
| Super-classes |
obo:SO_1000010c |
| Sub-classes |
obo:SO_1000012c |
| URI | http://purl.obolibrary.org/obo/SO_1000012 |
|---|---|
| Super-classes |
obo:SO_1000011c |
| URI | http://purl.obolibrary.org/obo/SO_1000013 |
|---|---|
| Super-classes |
obo:SO_1000010c |
| URI | http://purl.obolibrary.org/obo/SO_1000014 |
|---|---|
| Super-classes |
obo:SO_1000009c |
| Sub-classes |
obo:SO_1000016c obo:SO_1000015c |
| URI | http://purl.obolibrary.org/obo/SO_1000015 |
|---|---|
| Super-classes |
obo:SO_1000014c |
| URI | http://purl.obolibrary.org/obo/SO_1000016 |
|---|---|
| Super-classes |
obo:SO_1000014c |
| URI | http://purl.obolibrary.org/obo/SO_1000017 |
|---|---|
| Super-classes |
obo:SO_0001483c |
| Sub-classes |
obo:SO_1000023c obo:SO_1000018c |
| URI | http://purl.obolibrary.org/obo/SO_1000018 |
|---|---|
| Super-classes |
obo:SO_1000017c |
| Sub-classes |
obo:SO_1000019c obo:SO_1000021c obo:SO_1000022c obo:SO_1000020c |
| URI | http://purl.obolibrary.org/obo/SO_1000019 |
|---|---|
| Super-classes |
obo:SO_1000018c |
| URI | http://purl.obolibrary.org/obo/SO_1000020 |
|---|---|
| Super-classes |
obo:SO_1000018c |
| URI | http://purl.obolibrary.org/obo/SO_1000021 |
|---|---|
| Super-classes |
obo:SO_1000018c |
| URI | http://purl.obolibrary.org/obo/SO_1000022 |
|---|---|
| Super-classes |
obo:SO_1000018c |
| URI | http://purl.obolibrary.org/obo/SO_1000023 |
|---|---|
| Super-classes |
obo:SO_1000017c |
| Sub-classes |
obo:SO_1000025c obo:SO_1000024c obo:SO_1000027c obo:SO_1000026c |
| URI | http://purl.obolibrary.org/obo/SO_1000024 |
|---|---|
| Super-classes |
obo:SO_1000023c |
| URI | http://purl.obolibrary.org/obo/SO_1000025 |
|---|---|
| Super-classes |
obo:SO_1000023c |
| URI | http://purl.obolibrary.org/obo/SO_1000026 |
|---|---|
| Super-classes |
obo:SO_1000023c |
| URI | http://purl.obolibrary.org/obo/SO_1000027 |
|---|---|
| Super-classes |
obo:SO_1000023c |
| URI | http://purl.obolibrary.org/obo/SO_1000028 |
|---|---|
| Super-classes |
obo:SO_1000183c |
| Restrictions |
so:has_qualityop some obo:SO_0001510c |
| Sub-classes |
obo:SO_1000029c obo:SO_1000038c obo:SO_1000045c obo:SO_1000141c obo:SO_1000030c |
| URI | http://purl.obolibrary.org/obo/SO_1000029 |
|---|---|
| Super-classes |
obo:SO_1000028c |
| Restrictions |
so:has_partop some obo:SO_0000159c |
| Sub-classes |
obo:SO_1000171c obo:SO_0000465c obo:SO_0000512c obo:SO_0000062c obo:SO_0000461c obo:SO_1000147c |
| URI | http://purl.obolibrary.org/obo/SO_1000030 |
|---|---|
| Super-classes |
obo:SO_1000028c |
| Restrictions |
so:has_partop some obo:SO_1000036c |
| Sub-classes |
obo:SO_1000151c obo:SO_1000148c obo:SO_0000439c obo:SO_1000046c obo:SO_1000047c obo:SO_1000171c |
| URI | http://purl.obolibrary.org/obo/SO_1000031 |
|---|---|
| Super-classes |
obo:SO_1000183c |
| Restrictions |
so:has_qualityop some obo:SO_0001511c |
| Sub-classes |
obo:SO_1000155c obo:SO_1000044c obo:SO_1000149c |
| URI | http://purl.obolibrary.org/obo/SO_1000032 |
|---|---|
| Description |
Indels can have a different number of bases than the corresponding reference sequence. The term name was changed from indel to delins on 2/24/2019 to align with the HGVS nomenclature term for a deletion-insertion. Indel was causing confusion in the annotation community (github issue 445). The HGVS nomenclature definition of deletion-insertion (delins) is a sequence change where, compared to a reference sequence, one or more nucleotides are replaced by one or more other nucleotides and which is not a substitution, inversion or conversion. |
| Super-classes |
obo:SO_0001059c |
| URI | http://purl.obolibrary.org/obo/SO_1000035 |
|---|---|
| Super-classes |
obo:SO_0000667c |
| Sub-classes |
obo:SO_0001928c obo:SO_1000173c |
| URI | http://purl.obolibrary.org/obo/SO_1000036 |
|---|---|
| Super-classes |
obo:SO_0001059c obo:SO_0001411c |
| URI | http://purl.obolibrary.org/obo/SO_1000037 |
|---|---|
| Super-classes |
obo:SO_1000183c |
| Sub-classes |
obo:SO_1000038c obo:SO_0000457c obo:SO_1000144c obo:SO_1000154c |
| URI | http://purl.obolibrary.org/obo/SO_1000038 |
|---|---|
| Super-classes |
obo:SO_1000037c obo:SO_1000028c |
| Restrictions |
so:has_partop some obo:SO_1000035c |
| Sub-classes |
obo:SO_0000465c obo:SO_1000041c obo:SO_0000547c obo:SO_0000549c obo:SO_1000149c |
| URI | http://purl.obolibrary.org/obo/SO_1000039 |
|---|---|
| Super-classes |
obo:SO_1000173c |
| URI | http://purl.obolibrary.org/obo/SO_1000040 |
|---|---|
| Super-classes |
obo:SO_1000173c |
| URI | http://purl.obolibrary.org/obo/SO_1000041 |
|---|---|
| Super-classes |
obo:SO_1000038c obo:SO_0000453c |
| Restrictions |
so:has_partop some obo:SO_1000035c so:has_partop some obo:SO_0000199c |
| Sub-classes |
obo:SO_1000162c obo:SO_1000159c obo:SO_0000062c |
| URI | http://purl.obolibrary.org/obo/SO_1000042 |
|---|---|
| Super-classes |
obo:SO_1000183c |
| Sub-classes |
obo:SO_1000138c obo:SO_1000140c obo:SO_0000060c |
| URI | http://purl.obolibrary.org/obo/SO_1000043 |
|---|---|
| Super-classes |
obo:SO_1000044c |
| URI | http://purl.obolibrary.org/obo/SO_1000044 |
|---|---|
| Super-classes |
obo:SO_1000031c obo:SO_0000199c |
| Sub-classes |
obo:SO_1000043c obo:SO_1000147c obo:SO_0002060c obo:SO_1000048c obo:SO_0002061c obo:SO_1000148c obo:SO_0000686c |
| URI | http://purl.obolibrary.org/obo/SO_1000045 |
|---|---|
| Super-classes |
obo:SO_1000028c |
| Restrictions |
so:has_qualityop some obo:SO_0000988c |
| Sub-classes |
obo:SO_0000439c obo:SO_1000145c |
| URI | http://purl.obolibrary.org/obo/SO_1000046 |
|---|---|
| Super-classes |
obo:SO_1000030c |
| Restrictions |
so:has_qualityop some obo:SO_0001518c |
| URI | http://purl.obolibrary.org/obo/SO_1000047 |
|---|---|
| Super-classes |
obo:SO_1000030c |
| Restrictions |
so:has_qualityop some obo:SO_0001519c |
| URI | http://purl.obolibrary.org/obo/SO_1000048 |
|---|---|
| Super-classes |
obo:SO_1000044c |
| URI | http://purl.obolibrary.org/obo/SO_1000049 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000050 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. Also as there is not change, it is not a good ontological term. |
| URI | http://purl.obolibrary.org/obo/SO_1000054 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000055 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000056 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000057 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000058 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000059 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000060 |
|---|---|
| Description |
The exact rules need to be stated, a common set of rules can be derived from e.g. BLOSUM62 amino acid distance matrix. |
| URI | http://purl.obolibrary.org/obo/SO_1000061 |
|---|---|
| Description |
The exact rules need to be stated, a common set of rules can be derived from e.g. BLOSUM62 amino acid distance matrix. |
| URI | http://purl.obolibrary.org/obo/SO_1000062 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000063 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000064 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000066 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000067 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000068 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000069 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000070 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000071 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000072 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000073 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000074 |
|---|---|
| Description |
A cryptic splice site is only used when the natural splice site has been disrupted by a sequence alteration. |
| URI | http://purl.obolibrary.org/obo/SO_1000075 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000076 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000078 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000079 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000080 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000081 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000082 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000083 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000084 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000085 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000086 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000087 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000088 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000089 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. Also, as there is no change, this is not a good ontological term. |
| URI | http://purl.obolibrary.org/obo/SO_1000092 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000093 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000094 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000095 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000096 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000097 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000098 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000099 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000100 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000101 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000102 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000103 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000104 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000105 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000106 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000107 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000108 |
|---|
| URI | http://purl.obolibrary.org/obo/SO_1000109 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000111 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000112 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. Also as there is no effect, it is not a good term. |
| URI | http://purl.obolibrary.org/obo/SO_1000115 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000116 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000117 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000118 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000119 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000120 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000121 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000122 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000123 |
|---|
| URI | http://purl.obolibrary.org/obo/SO_1000124 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000125 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000126 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000127 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000132 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. Updated after discussion with Peter Taschner - Feb 09. |
| URI | http://purl.obolibrary.org/obo/SO_1000134 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000136 |
|---|---|
| Super-classes |
obo:SO_1000183c |
| Sub-classes |
obo:SO_1000143c obo:SO_1000142c |
| URI | http://purl.obolibrary.org/obo/SO_1000138 |
|---|---|
| Super-classes |
obo:SO_1000042c |
| URI | http://purl.obolibrary.org/obo/SO_1000140 |
|---|---|
| Super-classes |
obo:SO_1000042c |
| URI | http://purl.obolibrary.org/obo/SO_1000141 |
|---|---|
| Super-classes |
obo:SO_1000028c |
| URI | http://purl.obolibrary.org/obo/SO_1000142 |
|---|---|
| Description |
Corrected spelling from dexstrosynaptic_chromosome to dextrosynaptic_chromosome on April 14, 2020 in response to GitHub request #447 |
| Super-classes |
obo:SO_1000136c |
| URI | http://purl.obolibrary.org/obo/SO_1000143 |
|---|---|
| Super-classes |
obo:SO_1000136c |
| URI | http://purl.obolibrary.org/obo/SO_1000144 |
|---|---|
| Super-classes |
obo:SO_1000037c |
| Sub-classes |
obo:SO_1000145c |
| URI | http://purl.obolibrary.org/obo/SO_1000145 |
|---|---|
| Super-classes |
obo:SO_1000144c obo:SO_1000045c |
| Restrictions |
so:has_qualityop some obo:SO_0001516c |
| URI | http://purl.obolibrary.org/obo/SO_1000147 |
|---|---|
| Super-classes |
obo:SO_1000044c obo:SO_1000029c |
| Restrictions |
so:has_partop some obo:SO_0000159c |
| URI | http://purl.obolibrary.org/obo/SO_1000148 |
|---|---|
| Super-classes |
obo:SO_1000030c obo:SO_1000044c |
| Restrictions |
so:has_partop some obo:SO_1000036c |
| Sub-classes |
obo:SO_1000158c |
| URI | http://purl.obolibrary.org/obo/SO_1000149 |
|---|---|
| Super-classes |
obo:SO_1000031c obo:SO_1000038c |
| URI | http://purl.obolibrary.org/obo/SO_1000150 |
|---|---|
| Super-classes |
obo:SO_0002060c |
| URI | http://purl.obolibrary.org/obo/SO_1000151 |
|---|---|
| Super-classes |
obo:SO_1000030c |
| URI | http://purl.obolibrary.org/obo/SO_1000152 |
|---|---|
| Super-classes |
obo:SO_1000154c |
| URI | http://purl.obolibrary.org/obo/SO_1000153 |
|---|---|
| Super-classes |
obo:SO_1000154c |
| URI | http://purl.obolibrary.org/obo/SO_1000154 |
|---|---|
| Super-classes |
obo:SO_1000037c |
| Sub-classes |
obo:SO_1000153c obo:SO_1000152c obo:SO_1000160c |
| URI | http://purl.obolibrary.org/obo/SO_1000155 |
|---|---|
| Super-classes |
obo:SO_1000031c obo:SO_0000453c |
| Sub-classes |
obo:SO_1000157c obo:SO_1000161c obo:SO_0000063c obo:SO_1000156c |
| URI | http://purl.obolibrary.org/obo/SO_1000156 |
|---|---|
| Super-classes |
obo:SO_1000155c |
| URI | http://purl.obolibrary.org/obo/SO_1000157 |
|---|---|
| Super-classes |
obo:SO_1000155c |
| URI | http://purl.obolibrary.org/obo/SO_1000158 |
|---|---|
| Super-classes |
obo:SO_1000148c |
| Restrictions |
so:has_partop some obo:SO_1000036c |
| URI | http://purl.obolibrary.org/obo/SO_1000159 |
|---|---|
| Super-classes |
obo:SO_1000041c |
| Restrictions |
so:has_partop some obo:SO_0001514c |
| URI | http://purl.obolibrary.org/obo/SO_1000160 |
|---|---|
| Description |
Flag - unknown in the definition. |
| Super-classes |
obo:SO_1000154c |
| URI | http://purl.obolibrary.org/obo/SO_1000161 |
|---|---|
| Description |
FLAG - term describes an unknown. |
| Super-classes |
obo:SO_1000155c |
| URI | http://purl.obolibrary.org/obo/SO_1000162 |
|---|---|
| Description |
FLAG - definition describes an unknown. |
| Super-classes |
obo:SO_1000041c |
| URI | http://purl.obolibrary.org/obo/SO_1000170 |
|---|---|
| Super-classes |
obo:SO_1000183c |
| Sub-classes |
obo:SO_1000175c |
| URI | http://purl.obolibrary.org/obo/SO_1000171 |
|---|---|
| Super-classes |
obo:SO_1000029c obo:SO_1000030c |
| Restrictions |
so:has_partop some obo:SO_1000036c so:has_partop some obo:SO_0000159c |
| URI | http://purl.obolibrary.org/obo/SO_1000173 |
|---|---|
| Super-classes |
obo:SO_1000035c |
| Sub-classes |
obo:SO_1000040c obo:SO_1000039c |
| URI | http://purl.obolibrary.org/obo/SO_1000175 |
|---|---|
| Super-classes |
obo:SO_1000170c |
| URI | http://purl.obolibrary.org/obo/SO_1000180 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000181 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000182 |
|---|---|
| Super-classes |
obo:SO_0000240c |
| Sub-classes |
obo:SO_0000054c obo:SO_0001254c |
| URI | http://purl.obolibrary.org/obo/SO_1000183 |
|---|---|
| Super-classes |
obo:SO_0000240c |
| Sub-classes |
obo:SO_1000031c obo:SO_1000037c obo:SO_0001784c obo:SO_1000042c obo:SO_0000550c obo:SO_1000170c obo:SO_1000028c obo:SO_0000065c obo:SO_1000136c obo:SO_0000453c |
| URI | http://purl.obolibrary.org/obo/SO_1000184 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000185 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1000186 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1001186 |
|---|---|
| Description |
OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect. |
| URI | http://purl.obolibrary.org/obo/SO_1001187 |
|---|---|
| Super-classes |
obo:SO_0000673c |
| Restrictions |
so:has_qualityop some obo:SO_0000877c |
| URI | http://purl.obolibrary.org/obo/SO_1001188 |
|---|---|
| Super-classes |
obo:SO_0000463c |
| URI | http://purl.obolibrary.org/obo/SO_1001189 |
|---|---|
| Super-classes |
obo:SO_0000463c |
| Sub-classes |
obo:SO_1001192c obo:SO_1001195c |
| URI | http://purl.obolibrary.org/obo/SO_1001190 |
|---|---|
| Super-classes |
obo:SO_1001195c |
| URI | http://purl.obolibrary.org/obo/SO_1001191 |
|---|---|
| Super-classes |
obo:SO_1001195c |
| URI | http://purl.obolibrary.org/obo/SO_1001192 |
|---|---|
| Super-classes |
obo:SO_1001189c |
| URI | http://purl.obolibrary.org/obo/SO_1001193 |
|---|---|
| Super-classes |
obo:SO_1001195c |
| URI | http://purl.obolibrary.org/obo/SO_1001194 |
|---|
| URI | http://purl.obolibrary.org/obo/SO_1001195 |
|---|---|
| Super-classes |
obo:SO_1001189c |
| Sub-classes |
obo:SO_1001191c obo:SO_1001193c obo:SO_1001190c |
| URI | http://purl.obolibrary.org/obo/SO_1001196 |
|---|---|
| Super-classes |
obo:SO_0000654c obo:SO_0001431c |
| Restrictions |
so:has_qualityop some obo:SO_0000976c |
| URI | http://purl.obolibrary.org/obo/SO_1001197 |
|---|---|
| Super-classes |
obo:SO_0000631c obo:SO_0000079c |
| Restrictions |
so:has_qualityop some obo:SO_0000879c |
| URI | http://purl.obolibrary.org/obo/SO_1001217 |
|---|---|
| Super-classes |
obo:SO_0000081c |
| URI | http://purl.obolibrary.org/obo/SO_1001244 |
|---|
| URI | http://purl.obolibrary.org/obo/SO_1001246 |
|---|---|
| Super-classes |
obo:SO_0000316c |
| Restrictions |
so:has_qualityop some obo:SO_0000906c |
| URI | http://purl.obolibrary.org/obo/SO_1001247 |
|---|---|
| Super-classes |
obo:SO_1001254c |
| Restrictions |
so:has_originop some obo:SO_0000910c |
| URI | http://purl.obolibrary.org/obo/SO_1001249 |
|---|---|
| Super-classes |
obo:SO_1001251c |
| Restrictions |
so:has_qualityop some obo:SO_0000908c |
| URI | http://purl.obolibrary.org/obo/SO_1001251 |
|---|---|
| Super-classes |
obo:SO_1001254c |
| Restrictions |
so:has_qualityop some obo:SO_0000907c |
| Sub-classes |
obo:SO_1001259c obo:SO_1001249c obo:SO_0002071c |
| URI | http://purl.obolibrary.org/obo/SO_1001254 |
|---|---|
| Super-classes |
obo:SO_0000316c |
| Restrictions |
so:has_qualityop some obo:SO_0000732c |
| Sub-classes |
obo:SO_1001247c obo:SO_1001251c |
| URI | http://purl.obolibrary.org/obo/SO_1001259 |
|---|---|
| Super-classes |
obo:SO_1001251c |
| Restrictions |
so:has_qualityop some obo:SO_0000909c |
| URI | http://purl.obolibrary.org/obo/SO_1001260 |
|---|---|
| Super-classes |
obo:SO_0000243c obo:SO_1001268c |
| URI | http://purl.obolibrary.org/obo/SO_1001261 |
|---|---|
| Super-classes |
obo:SO_0000234c |
| Restrictions |
so:has_qualityop some obo:SO_0000881c |
| Sub-classes |
obo:SO_1001264c obo:SO_1001265c |
| URI | http://purl.obolibrary.org/obo/SO_1001262 |
|---|---|
| Super-classes |
obo:SO_0000887c |
| URI | http://purl.obolibrary.org/obo/SO_1001263 |
|---|---|
| Super-classes |
obo:SO_0000887c |
| URI | http://purl.obolibrary.org/obo/SO_1001264 |
|---|---|
| Super-classes |
obo:SO_1001261c |
| Restrictions |
so:has_qualityop some obo:SO_0000886c |
| URI | http://purl.obolibrary.org/obo/SO_1001265 |
|---|---|
| Super-classes |
obo:SO_1001261c |
| Restrictions |
so:has_qualityop some obo:SO_0000882c |
| URI | http://purl.obolibrary.org/obo/SO_1001268 |
|---|---|
| Super-classes |
obo:SO_0000836c |
| Sub-classes |
obo:SO_1001288c obo:SO_1001274c obo:SO_1001277c obo:SO_1001280c obo:SO_1001260c |
| URI | http://purl.obolibrary.org/obo/SO_1001269 |
|---|---|
| Super-classes |
obo:SO_0000680c |
| URI | http://purl.obolibrary.org/obo/SO_1001271 |
|---|---|
| Description |
Intron characteristic of tRNA genes; splices by an endonuclease-ligase mediated mechanism. |
| Super-classes |
obo:SO_0001216c |
| URI | http://purl.obolibrary.org/obo/SO_1001272 |
|---|---|
| Description |
Could be a cross product with Gene ontology, GO:0006388. |
| Super-classes |
obo:SO_0001216c |
| URI | http://purl.obolibrary.org/obo/SO_1001273 |
|---|---|
| Super-classes |
obo:SO_0000680c |
| URI | http://purl.obolibrary.org/obo/SO_1001274 |
|---|---|
| Super-classes |
obo:SO_1001268c |
| URI | http://purl.obolibrary.org/obo/SO_1001275 |
|---|---|
| Super-classes |
obo:SO_0001411c |
| URI | http://purl.obolibrary.org/obo/SO_1001277 |
|---|---|
| Super-classes |
obo:SO_1001268c |
| Sub-classes |
obo:SO_1001287c obo:SO_1001286c obo:SO_1001279c obo:SO_1001281c |
| URI | http://purl.obolibrary.org/obo/SO_1001279 |
|---|---|
| Super-classes |
obo:SO_1001277c |
| URI | http://purl.obolibrary.org/obo/SO_1001280 |
|---|---|
| Super-classes |
obo:SO_1001268c |
| URI | http://purl.obolibrary.org/obo/SO_1001281 |
|---|---|
| Super-classes |
obo:SO_1001277c |
| URI | http://purl.obolibrary.org/obo/SO_1001282 |
|---|---|
| Super-classes |
obo:SO_1001288c |
| URI | http://purl.obolibrary.org/obo/SO_1001283 |
|---|---|
| Super-classes |
obo:SO_1001288c |
| URI | http://purl.obolibrary.org/obo/SO_1001284 |
|---|---|
| Description |
Definition updated with Mejia-Almonte et.al PMID:32665585 on Aug 5, 2020. Added relationship has_part SO:0002300 |
| Super-classes |
obo:SO_0005855c |
| Restrictions |
so:has_partop some obo:SO_0002300c |
| Sub-classes |
obo:SO_0002302c obo:SO_0002303c |
| URI | http://purl.obolibrary.org/obo/SO_1001285 |
|---|---|
| Super-classes |
obo:SO_1001288c |
| URI | http://purl.obolibrary.org/obo/SO_1001286 |
|---|---|
| Super-classes |
obo:SO_1001277c |
| URI | http://purl.obolibrary.org/obo/SO_1001287 |
|---|---|
| Super-classes |
obo:SO_1001277c |
| URI | http://purl.obolibrary.org/obo/SO_1001288 |
|---|---|
| Description |
This term does not include the stop codons that are redefined. An example would be a stop codon that partially overlapped a frame shifting site would be an example stimulatory signal. |
| Super-classes |
obo:SO_1001268c |
| Sub-classes |
obo:SO_1001282c obo:SO_1001285c obo:SO_1001283c |
| URI | http://purl.obolibrary.org/obo/SO_2000061 |
|---|---|
| Super-classes |
obo:SO_0000695c |
| URI | http://purl.obolibrary.org/obo/SO_3000000 |
|---|---|
| Description |
Requested by tracker 2021594, July 2008, by Alex. |
| Super-classes |
obo:SO_0000842c |
| Sub-classes |
obo:SO_0001741c |
| URI | http://purl.obolibrary.org/obo/so#associated_with |
|---|---|
| Description |
This relationship is vague and up for discussion. |
| URI | http://purl.obolibrary.org/obo/so#complete_evidence_for_feature |
|---|---|
| Description |
If A is a feature with multiple regions such as a multi exon transcript, the supporting EST evidence is complete if each of the regions is supported by an equivalent region in B. Also there must be no extra regions in B that are not represented in A. This relationship was requested by jeltje on the SO term tracker. The thread for the discussion is available can be accessed via tracker ID:1917222. |
| Super-properties | so:evidence_for_featureop |
| URI | http://purl.obolibrary.org/obo/so#connects_on |
|---|---|
| Description |
Example: A splice_junction connects_on exon, exon, mature_transcript. |
| URI | http://purl.obolibrary.org/obo/so#contained_by |
|---|---|
| Description |
The inverse is contains. Example: intein contained_by immature_peptide_region. |
| URI | http://purl.obolibrary.org/obo/so#contains |
|---|---|
| Description |
Example: pre_miRNA contains miRNA_loop. |
| URI | http://purl.obolibrary.org/obo/so#evidence_for_feature |
|---|---|
| Description |
This relationship was requested by nlw on the SO term tracker. The thread for the discussion is available can be accessed via tracker ID:1917222. |
| URI | http://purl.obolibrary.org/obo/so#exemplar_of |
|---|---|
| Description |
Tracker id: 2594157. |
| URI | http://purl.obolibrary.org/obo/so#finished_by |
|---|---|
| Description |
Example CDS finished_by stop_codon. |
| URI | http://purl.obolibrary.org/obo/so#finishes |
|---|---|
| Description |
Example: stop_codon finishes CDS. |
| URI | http://purl.obolibrary.org/obo/so#gained |
|---|---|
| Description |
A relation with which to annotate the changes in a variant sequence with respect to a reference. For example a variant transcript may gain a stop codon not present in the reference sequence. |
| URI | http://purl.obolibrary.org/obo/so#has_integral_part |
|---|---|
| Description |
Example: mRNA has_integral_part CDS. |
| Super-properties | so:has_partop |
| URI | http://purl.obolibrary.org/obo/so#has_part |
|---|---|
| Description |
Example: operon has_part gene. |
| URI | http://purl.obolibrary.org/obo/so#has_quality |
|---|---|
| Description |
The relationship between a feature and an attribute. |
| URI | http://purl.obolibrary.org/obo/so#homologous_to |
|---|---|
| Super-properties | so:similar_toop |
| URI | http://purl.obolibrary.org/obo/so#integral_part_of |
|---|---|
| Description |
Example: exon integral_part_of transcript. |
| Super-properties | so:part_ofop |
| URI | http://purl.obolibrary.org/obo/so#is_consecutive_sequence_of |
|---|---|
| Description |
Example: region is consecutive_sequence of base. |
| URI | http://purl.obolibrary.org/obo/so#lost |
|---|---|
| Description |
A relation with which to annotate the changes in a variant sequence with respect to a reference. For example a variant transcript may have lost a stop codon present in the reference sequence. |
| URI | http://purl.obolibrary.org/obo/so#maximally_overlaps |
|---|---|
| Description |
Example: non_coding_region_of_exon maximally_overlaps the intersections of exon and UTR. |
| URI | http://purl.obolibrary.org/obo/so#member_of |
|---|---|
| Description |
A subtype of part_of. Inverse is collection_of. Winston, M, Chaffin, R, Herrmann: A taxonomy of part-whole relations. Cognitive Science 1987, 11:417-444. |
| Super-properties | so:part_ofop |
| URI | http://purl.obolibrary.org/obo/so#non_functional_homolog_of |
|---|---|
| Super-properties | so:homologous_toop |
| URI | http://purl.obolibrary.org/obo/so#orthologous_to |
|---|---|
| Super-properties | so:homologous_toop |
| URI | http://purl.obolibrary.org/obo/so#overlaps |
|---|---|
| Description |
Example: coding_exon overlaps CDS. |
| URI | http://purl.obolibrary.org/obo/so#paralogous_to |
|---|---|
| Super-properties | so:homologous_toop |
| URI | http://purl.obolibrary.org/obo/so#part_of |
|---|---|
| Description |
Example: amino_acid part_of polypeptide. |
| URI | http://purl.obolibrary.org/obo/so#partial_evidence_for_feature |
|---|---|
| Super-properties | so:evidence_for_featureop |
| URI | http://purl.obolibrary.org/obo/so#processed_from |
|---|---|
| Description |
Example: miRNA processed_from miRNA_primary_transcript. |
| URI | http://purl.obolibrary.org/obo/so#processed_into |
|---|---|
| Description |
Example: miRNA_primary_transcript processed into miRNA. |
| URI | http://purl.obolibrary.org/obo/so#started_by |
|---|---|
| Description |
Example: CDS started_by start_codon. |
| URI | http://purl.obolibrary.org/obo/so#starts |
|---|---|
| Description |
Example: start_codon starts CDS. |
| URI | http://purl.obolibrary.org/obo/so#transcribed_from |
|---|---|
| Description |
Example: primary_transcript transcribed_from gene. |
| URI | http://purl.obolibrary.org/obo/so#transcribed_to |
|---|---|
| Description |
Example: gene transcribed_to primary_transcript. |
| URI | http://purl.obolibrary.org/obo/so#translates_to |
|---|---|
| Description |
Example: codon translates_to amino_acid. |
| URI | http://purl.obolibrary.org/obo/so#AAMOD |
|---|---|
| Super-properties | oboInOwl:SynonymTypePropertyap |
| URI | http://purl.obolibrary.org/obo/so#AGR |
|---|---|
| Super-properties | oboInOwl:SynonymTypePropertyap |
| URI | http://purl.obolibrary.org/obo/so#Alliance_of_Genome_Resources |
|---|---|
| Description |
Alliance of Genome Resources Gene Biotype Slim |
| Super-properties | oboInOwl:SubsetPropertyap |
| URI | http://purl.obolibrary.org/obo/so#BS |
|---|---|
| Super-properties | oboInOwl:SynonymTypePropertyap |
| URI | http://purl.obolibrary.org/obo/so#DBVAR |
|---|---|
| Description |
database of genomic structural variation |
| Super-properties | oboInOwl:SubsetPropertyap |
| URI | http://purl.obolibrary.org/obo/so#RNAMOD |
|---|---|
| Super-properties | oboInOwl:SynonymTypePropertyap |
| URI | http://purl.obolibrary.org/obo/so#SOFA |
|---|---|
| Description |
SO feature annotation |
| Super-properties | oboInOwl:SubsetPropertyap |
| URI | http://purl.obolibrary.org/obo/so#VAR |
|---|---|
| Super-properties | oboInOwl:SynonymTypePropertyap |
| URI | http://purl.obolibrary.org/obo/so#aa1 |
|---|---|
| Super-properties | oboInOwl:SynonymTypePropertyap |
| URI | http://purl.obolibrary.org/obo/so#aa3 |
|---|---|
| Super-properties | oboInOwl:SynonymTypePropertyap |
| URI | http://purl.obolibrary.org/obo/so#biosapiens |
|---|---|
| Description |
biosapiens protein feature ontology |
| Super-properties | oboInOwl:SubsetPropertyap |
| URI | http://purl.obolibrary.org/obo/so#dbsnp |
|---|---|
| Super-properties | oboInOwl:SynonymTypePropertyap |
| URI | http://purl.obolibrary.org/obo/so#dbvar |
|---|---|
| Super-properties | oboInOwl:SynonymTypePropertyap |
| URI | http://purl.obolibrary.org/obo/so#ebi_variants |
|---|---|
| Super-properties | oboInOwl:SynonymTypePropertyap |
http://purl.obolibrary.org/obo/so.owlhttp://purl.org/dc/terms/http://purl.obolibrary.org/obo/http://www.geneontology.org/formats/oboInOwl#http://www.w3.org/2002/07/owl#http://www.w3.org/ns/prov#http://www.w3.org/1999/02/22-rdf-syntax-ns#http://www.w3.org/2000/01/rdf-schema#https://schema.org/http://www.w3.org/2004/02/skos/core#http://purl.obolibrary.org/obo/so#http://www.w3.org/2001/XMLSchema#| c | Classes |
| op | Object Properties |
| fp | Functional Properties |
| dp | Data Properties |
| dp | Annotation Properties |
| p | Properties |
| ni | Named Individuals |