STATO: the statistical methods ontology

2 by 2 contingency table^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000138

has super-classes

contingency table^c

(is about^op exactly 1 dichotomous variable^c) and (is about^op exactly 1 )

2 by n contingency table^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000185

is equivalent to

(is about^op min 1 ) and (is about^op exactly 1 dichotomous variable^c)

has super-classes

contingency table^c

2 step Fagan nomogram^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000408

has super-classes

graph^c

has part^op some axis^c and (denotes^op some likelihood ratio^c)

has part^op some axis^c and (denotes^op some true positive rate^c)

has part^op some axis^c and (denotes^op some pretest probability^c)

has part^op some axis^c and (denotes^op some true negative rate^c)

2x2 factorial design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500015

has super-classes

full factorial design^c

has part^op some factor level combination^c

declares^op exactly 2

50% confidence interval^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000214

has super-classes

confidence interval^c

has part^op some confidence level^c and (has specified value^dp value 50)

90% confidence interval^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000021

has super-classes

confidence interval^c

has part^op some confidence level^c and (has specified value^dp value 90)

95% confidence interval^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000231

has super-classes

confidence interval^c

has part^op some confidence level^c and (has specified value^dp value 95)

95% credible interval^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000456

has super-classes

credible interval^c

99% confidence interval^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000127

has super-classes

confidence interval^c

has part^op some confidence level^c and (has specified value^dp value 99)

99% credible interval^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000458

has super-classes

credible interval^c

absence of association hypothesis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000056

has super-classes

hypothesis^c

part of^op some association between categorical variables testing objective^c

absence of between group difference hypothesis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000061

has super-classes

hypothesis^c

hypothesis^c and (part of^op some between group comparison objective^c)

absence of depletion hypothesis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000297

has super-classes

absence of negative difference hypothesis^c

absence of difference hypothesis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000288

has super-classes

hypothesis^c

absence of enrichment hypothesis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000296

has super-classes

absence of positive difference hypothesis^c

absence of negative difference hypothesis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000294

has super-classes

hypothesis^c

part of^op some between group comparison objective^c

has sub-classes

absence of depletion hypothesis^c

is disjoint with

absence of positive difference hypothesis^c

absence of positive difference hypothesis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000295

has super-classes

hypothesis^c

part of^op some between group comparison objective^c

has sub-classes

absence of enrichment hypothesis^c

is disjoint with

absence of negative difference hypothesis^c

absence of within subject difference hypothesis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000062

has super-classes

hypothesis^c

part of^op some within subject comparison objective^c

accuracy^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000415

has super-classes

ratio^c

action specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000007

has super-classes

directive information entity^c

acute toxicity study^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000141

has super-classes

investigation^c

has_specified_output^op some (p-value^c and (is_specified_output_of^op some regression analysis method^c or between group comparison statistical test^c)) or (q-value^c and (preceded by^op some between group comparison statistical test^c))

executes^op some parallel group design^c and factorial design^c

adding a material entity into a target^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000274

is equivalent to

achieves_planned_objective^op some adding material objective^c

has super-classes

material combination^c

realizes^op some target of material addition role^c

has_specified_output^op some material entity^c and (has role^op some material to be added role^c) and (located in^op some material entity^c and (has role^op some target of material addition role^c))

realizes^op some material to be added role^c

adding material objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000434

has super-classes

material combination objective^c

addition of molecular label^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600038

has super-classes

material processing^c

achieves_planned_objective^op some material transformation objective^c

has_specified_input^op some target of material addition^c

has_specified_output^op some molecular-labeled material^c

has_specified_input^op some molecular label^c

additive dominant genetic and epistatic inheritance model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000489

has super-classes

genetic inheritance model^c

additive dominant genetic inheritance model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000488

has super-classes

genetic inheritance model^c

additive genetic inheritance model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000487

has super-classes

genetic inheritance model^c

agglomerative hierarchical clustering^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200154

has super-classes

hierarchical clustering^c

has sub-classes

average linkage hierarchical clustering^c, complete linkage hierarchical clustering^c, single linkage hierarchical clustering^c

Akaike information criterion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000325

has super-classes

measurement datum^c

is about^op some statistical model^c

is_specified_input_of^op some statistical model selection^c

has sub-classes

corrected Akaike information criterion^c

algorithm^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000064

has super-classes

plan specification^c

allele frequency^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000254

has super-classes

data item^c

has denominator^op some count^c and (is about^op some population^c and allele information^c)

has numerator^op some count^c and (is about^op some population^c and allele information^c)

allele information^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001352

has super-classes

genetic alteration information^c

(part of^op some genotype information^c) and (is about^op some region^c)

alpha distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000388

has super-classes

continuous probability distribution^c

alternative hypothesis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000208

has super-classes

hypothesis^c

is disjoint with

null hypothesis^c

Altman box and whisker plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000128

has super-classes

box and whisker plot^c

Amniota^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32524

has super-classes

Tetrapoda^c

has sub-classes

Mammalia^c

analyte assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000443

is equivalent to

achieves_planned_objective^op some analyte measurement objective^c

has super-classes

assay^c

has_specified_output^op some measurement datum^c

realizes^op some analyte role^c

has sub-classes

genotyping assay^c, transcription profiling assay^c

analyte measurement objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000437

has super-classes

assay objective^c

analyte role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000275

has super-classes

measurand role^c

role of^op some molecular entity^c or atom^c

realized in^op only analyte assay^c

anatomical cluster^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000477

has super-classes

material entity^c

ANCOVA^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000179

has super-classes

data transformation^c

has_specified_input^op some study design independent variable^c

(has_specified_input^op min 1 ) and (has_specified_input^op min 1 )

Anderson-Darling test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000042

has super-classes

goodness of fit statistical test^c

achieves_planned_objective^op some goodness of fit testing objective^c

has_specified_input^op some data set^c

has_specified_input^op exactly 1 probability distribution^c

has_specified_output^op some p-value^c

has_specified_input^op some false positive rate^c

ANOVA^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200201

is equivalent to

(has part^op some F-test^c) and (achieves_planned_objective^op some between group comparison objective^c)

has super-classes

between group comparison statistical test^c

has part^op some (normal distribution hypothesis^c and (has value^dp value true)) and (is about^op some residual^c)

(has_specified_input^op min 1 ) and (has_specified_input^op min 1 )

has_specified_input^op min 2

has_specified_input^op some F-distribution^c

preceded by^op some Levene's test^c or Barlett's test^c or Brown Forsythe test^c or Kolmogorov-Smirnov test^c

has_specified_input^op some false positive rate^c

has part^op some homoskedasticity hypothesis^c and (has value^dp value true)

has_specified_output^op some p-value^c and (is about^op some absence of between group difference hypothesis^c)

has_specified_output^op some confidence interval^c

has_specified_output^op some standardized mean difference^c

has_specified_input^op some number of degrees of freedom^c

has sub-classes

multiway ANOVA^c, one-way ANOVA^c, repeated measure ANOVA^c, two-way ANOVA^c

Ante-dependence covariance structure^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000367

has super-classes

covariance structure^c

Archaea^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2157

has super-classes

organism^c

area under curve^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000209

has super-classes

measurement datum^c

assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000070

is equivalent to

achieves_planned_objective^op some assay objective^c

has super-classes

planned process^c

has_specified_input^op some material entity^c and (has role^op some evaluant role^c)

realizes^op some evaluant role^c

has_specified_output^op some data item^c and (is about^op some material entity^c and (has role^op some evaluant role^c))

has sub-classes

DNA microarray hybridization^c, analyte assay^c, cytometry assay^c, fluorescence detection assay^c, imaging assay^c, in live cell assay^c, sequencing assay^c

assay array^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001865

has super-classes

device^c

has function^op some solid support function^c

has sub-classes

microarray^c

assay objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000441

has super-classes

objective specification^c

has sub-classes

analyte measurement objective^c

assess statistical evidence^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000116

has super-classes

planned process^c

association between categorical variables testing objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000121

has super-classes

statistical hypothesis test objective^c

has part^op some absence of association hypothesis^c

atom^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_33250

has super-classes

material entity^c

augmented experimental design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000499

has super-classes

study design^c

average linkage hierarchical clustering^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200043

has super-classes

agglomerative hierarchical clustering^c

average log signal intensity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000188

has super-classes

measurement datum^c

normalized data set^c

is_specified_output_of^op some logarithmic transformation^c and (has_specified_input^op some fold change^c)

average value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000679

is equivalent to

average value^c

is_specified_output_of^op some averaging data transformation^c

has super-classes

measure of central tendency^c

has sub-classes

sample mean^c

average value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000573

has super-classes

measure of central tendency^c

has sub-classes

sample mean^c

averaging data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200170

is equivalent to

(has_specified_output^op some average value^c) or (achieves_planned_objective^op some averaging objective^c)

has super-classes

data transformation^c

averaging objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000425

has super-classes

data transformation objective^c

axis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000007

has super-classes

line graph^c

has sub-classes

cartesian coordinate axis^c

Bacteria^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2

has super-classes

organism^c

balanced design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000003

has super-classes

study design^c

banded heterogeneous Toeplitz covariance structure^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000354

has super-classes

covariance structure^c

banded Toeplitz covariance structure^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000356

has super-classes

covariance structure^c

bar chart^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000166

has super-classes

graph^c

has part^op some y-axis^c and (denotes^op some data item^c)

has part^op some x-axis^c and (denotes^op some categorical label^c)

has sub-classes

grouped bar chart^c, stacked bar chart^c

Barlett's test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000079

has super-classes

homoskedasticity test^c

goodness of fit statistical test^c

has_specified_input^op some false positive rate^c

has_specified_input^op some categorical variable^c

achieves_planned_objective^op some goodness of fit testing objective^c

achieves_planned_objective^op some equal variance testing objective^c

has_specified_output^op some p-value^c

has_specified_input^op some continuous variable^c

Barnard's test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000310

has super-classes

test of association between categorical variables^c

achieves_planned_objective^op some association between categorical variables testing objective^c

has_specified_input^op some hypergeometric distribution^c or multinomial distribution^c or binomial distribution^c

has_specified_input^op some false positive rate^c

has_specified_output^op some p-value^c

has_specified_input^op exactly 2

has_specified_input^op exactly 2 categorical variable^c

has_specified_input^op exactly 1 2 by 2 contingency table^c

Bayes A^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000483

has super-classes

model parameter estimation^c

breeding value estimation^c

has_specified_output^op some estimated breeding value^c

has_specified_input^op some scaled t distribution^c

has_specified_output^op some model parameter estimate^c

has_specified_output^op some p-value^c

achieves_planned_objective^op some genomic selection objective^c and (has part^op some response variable explained by random effect of predictor variable hypothesis^c)

Bayes B^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000484

has super-classes

model parameter estimation^c

breeding value estimation^c

achieves_planned_objective^op some genomic selection objective^c and (has part^op some response variable explained by random effect of predictor variable hypothesis^c)

has_specified_input^op some mixture distribution^c

has_specified_output^op some model parameter estimate^c

has_specified_output^op some p-value^c

has_specified_output^op some estimated breeding value^c

Bayes C pi^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000533

has super-classes

model parameter estimation^c

breeding value estimation^c

has_specified_output^op some model parameter estimate^c

has_specified_output^op some estimated breeding value^c

has_specified_input^op some normal distribution^c

Bayes factor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000266

has super-classes

measurement datum^c

is_specified_input_of^op some Bayesian model selection^c

is about^op some statistical model^c

Bayes R^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000546

has super-classes

model parameter estimation^c

breeding value estimation^c

has_specified_output^op some genomic estimated breeding value^c

achieves_planned_objective^op some genomic selection objective^c and (has part^op some response variable explained by random effect of predictor variable hypothesis^c)

has_specified_input^op some normal distribution^c

has_specified_output^op some model parameter estimate^c

has_specified_output^op some p-value^c

Bayesian information criterion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000327

has super-classes

measurement datum^c

is about^op some statistical model^c

is_specified_input_of^op some statistical model selection^c

Bayesian least absolute shrinkage and selection operator^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000492

has super-classes

model parameter estimation^c

breeding value estimation^c

has_specified_output^op some model parameter estimate^c

has_specified_output^op some estimated breeding value^c

has_specified_input^op some Laplace probability distribution^c

Bayesian model^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000530

has super-classes

statistical model^c

declares^op some prior probability distribution^c

Bayesian model selection^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000143

has super-classes

statistical model selection^c

has_specified_input^op some data set^c

has part^op some Bayes factor^c

has_specified_input^op min 2 statistical model^c

bean plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000120

has super-classes

graph^c

Benjamini and Hochberg false discovery rate correction method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200036

has super-classes

false discovery rate correction method^c

has_specified_output^op some q-value^c

has_specified_input^op some p-value^c

achieves_planned_objective^op some multiple testing correction objective^c

has_specified_output^op some error corrected data set^c

Benjamini and Yekutieli false discovery rate correction method^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200049

has super-classes

false discovery rate correction method^c

has_specified_output^op some q-value^c

achieves_planned_objective^op some multiple testing correction objective^c

has_specified_output^op some error corrected data set^c

has_specified_input^op some p-value^c

Bernoulli distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000262

has super-classes

binomial distribution^c

best linear unbiased estimator^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000582

has super-classes

model parameter estimation^c

breeding value estimation^c

has_specified_output^op some p-value^c

has_specified_input^op some data set^c and (has part^op some genotype information^c)

has_specified_input^op some genetic inheritance model^c

has_specified_output^op some model parameter estimate^c

has_specified_output^op some estimated breeding value^c

best linear unbiased predictor^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000336

has super-classes

model parameter estimation^c

breeding value estimation^c

achieves_planned_objective^op some genomic selection objective^c and (has part^op some response variable explained by random effect of predictor variable hypothesis^c)

has_specified_output^op some p-value^c

has_specified_output^op some estimated breeding value^c

has_specified_output^op some model parameter estimate^c

beta distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000177

has super-classes

continuous probability distribution^c

is denoted by^op some probability distribution shape parameter^c

between group comparison objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000255

has super-classes

statistical hypothesis test objective^c

has part^op some absence of between group difference hypothesis^c

between group comparison statistical test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000279

is equivalent to

achieves_planned_objective^op some between group comparison objective^c

has super-classes

statistical hypothesis test^c

has sub-classes

ANOVA^c, Conover-Iman test of multiple comparisons using rank sums^c, Dunn’s multiple comparison test^c, Yuen t-Test with trimmed means^c, Z-test^c, non-parametric test^c, one sample t-test^c, post-hoc analysis^c, two sample Hotelling T2 test^c, two sample t-test with equal variance^c, two sample t-test with unequal variance^c

between-within denominator degrees of freedom approximation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000475

has super-classes

degree of freedom approximation^c

Bilateria^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33213

has super-classes

Opisthokonta^c

has sub-classes

Vertebrata <Metazoa>^c

binary classification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000031

has super-classes

data transformation^c

binomial distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000276

has super-classes

discrete probability distribution^c

has sub-classes

Bernoulli distribution^c

binomial logistic regression for analysis of dichotomous dependent variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000149

has super-classes

regression analysis method^c

has_specified_input^op some statistical model^c and (is about^op some study design dependent variable^c and dichotomous variable^c)

biological feature identification objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000015

has super-classes

objective specification^c

has sub-classes

molecular feature identification objective^c, sequence feature identification objective^c

biological_process^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0008150

has super-classes

process^c

has sub-classes

gene expression^c

biplot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000563

has super-classes

graph^c

block design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000046

is equivalent to

declares^op some blocking variable^c

has part^op some group assignment based on blocking variable specification^c

has super-classes

study design^c

has sub-classes

cross over design^c, dye swap design^c, matched pairs design^c, randomized complete block design^c, restricted randomized design^c

blocking variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000248

has super-classes

realizable entity^c

variable^c

realized in^op some group assignment based on blocking variable specification^c

box and whisker plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000243

has super-classes

graph^c

is about^op some maximum value^c

is about^op some data distribution^c

is about^op some center value^c

is about^op some first quartile^c

is about^op some minimum value^c

is about^op some third quartile^c

has sub-classes

Altman box and whisker plot^c, Spear box and whisker plot^c

Box–Behnkens design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000312

has super-classes

study design^c

breeding value estimation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000337

is equivalent to

has_specified_output^op some estimated breeding value^c

has super-classes

data transformation^c

has part^op some best linear unbiased predictor^c or ridge regression best linear unbiaised predictor^c or trait-specific relationship matrix best linear unbiaised prediction^c or Bayes A^c or Bayes B^c or Bayesian least absolute shrinkage and selection operator^c or Bayes C pi^c or reproducing kernel Hilbert space procedure^c or Bayes R^c or best linear unbiased estimator^c

has_specified_input^op some genotype data set^c or pedigree data set^c

has_specified_output^op some estimated breeding value^c

has_specified_input^op some statistical model^c

has sub-classes

Bayes A^c, Bayes B^c, Bayes C pi^c, Bayes R^c, Bayesian least absolute shrinkage and selection operator^c, best linear unbiased estimator^c, best linear unbiased predictor^c, breeding value estimation using genotype data^c, breeding value estimation using pedigree data^c, breeding value estimation using phenotypic data^c, genomic best linear unbiased prediction^c, reproducing kernel Hilbert space procedure^c, ridge regression best linear unbiaised predictor^c, trait-specific relationship matrix best linear unbiaised prediction^c

breeding value estimation using genotype data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000338

has super-classes

breeding value estimation^c

has_specified_output^op some estimated breeding value^c

has_specified_input^op some genetic inheritance model^c

has_specified_input^op some genotype data set^c

has part^op some best linear unbiased estimator^c

breeding value estimation using pedigree data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000339

has super-classes

breeding value estimation^c

has_specified_input^op some pedigree data set^c

breeding value estimation using phenotypic data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000340

has super-classes

breeding value estimation^c

has_specified_input^op some data set^c

Breslow-Day test for homogeneity of odds ratio^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000130

has super-classes

odds ratio homogeneity test^c

has_specified_input^op min 2 odds ratio^c

has_specified_input^op some false positive rate^c

has_specified_input^op min 2 2 by 2 contingency table^c

has_specified_output^op some p-value^c

achieves_planned_objective^op some homogeneity test objective^c

has_specified_input^op some Chi-square probability distribution^c

Breusch-Pagan test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000284

has super-classes

homoskedasticity test^c

achieves_planned_objective^op some equal variance testing objective^c

has_specified_output^op some p-value^c

has part^op some linear regression for analysis of continuous dependent variable^c

has_specified_input^op some statistical model^c

Brewer sampling^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000515

has super-classes

systematic sampling^c

Brown Forsythe test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000080

has super-classes

homoskedasticity test^c

has_specified_input^op some false positive rate^c

achieves_planned_objective^op some equal variance testing objective^c

has part^op some median calculation^c

has_specified_output^op some p-value^c

cartesian coordinate axis^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000011

has super-classes

axis^c

has sub-classes

x-axis^c, y-axis^c, z-axis^c

cartesian coordinate system^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000009

has super-classes

coordinate system^c

has part^op some cartesian coordinate axis^c

has part^op some cartesian spatial coordinate origin^c

has sub-classes

one dimensional cartesian coordinate system^c, three dimensional cartesian coordinate system^c, two dimensional cartesian coordinate system^c

cartesian product^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000192

has super-classes

data transformation^c

has sub-classes

cartesian product 2 sets^c

cartesian product 2 sets^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000194

has super-classes

cartesian product^c

cartesian spatial coordinate datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000400

has super-classes

data item^c

has coordinate unit label^op exactly 1

denotes^op some zero-dimensional spatial region^c

has sub-classes

cartesian spatial coordinate origin^c, one dimensional cartesian spatial coordinate datum^c, two dimensional cartesian spatial coordinate datum^c

is in domain of

has coordinate unit label^op, has x coordinate value^dp, has y coordinate value^dp

cartesian spatial coordinate origin^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000026

has super-classes

cartesian spatial coordinate datum^c

has sub-classes

one dimensional cartesian spatial coordinate origin^c, three dimensional cartesian spatial coordinate origin^c, two dimensional cartesian spatial coordinate origin^c

case-control study design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000089

has super-classes

parallel group design^c

declares^op exactly 1

denotes^op exactly 2 study group population^c

catalytic activity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0003824

has super-classes

GO:molecular_function^c

categorical label^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000963

has super-classes

datum label^c

categorical measurement datum^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000938

has super-classes

measurement datum^c

has value specification^op some categorical value specification^c

categorical value specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001930

has super-classes

value specification^c

categorical variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000252

has super-classes

variable^c

has part^op only categorical measurement datum^c

has sub-classes

ordinal variable^c, polychotomous variable^c

is disjoint with

continuous variable^c

cDNA library^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000164

has super-classes

recombinant vector^c

is_specified_output_of^op some recombinant vector cloning^c

has grain^op some recombinant vector^c

cell^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000000

has super-classes

material entity^c

has sub-classes

experimentally modified cell in vitro^c

cell freezing medium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001912

has super-classes

processed material^c

center calculation data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200181

is equivalent to

(has_specified_output^op some center value^c) or (achieves_planned_objective^op some center calculation objective^c)

has super-classes

data transformation^c

has sub-classes

median calculation^c, mode calculation^c

center calculation objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200177

has super-classes

data transformation objective^c

center value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000674

is equivalent to

center value^c

is_specified_output_of^op some center calculation data transformation^c

has super-classes

measure of central tendency^c

quartile^c

has sub-classes

mode^c

center value^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000574

has super-classes

measure of central tendency^c

quartile^c

has sub-classes

mode^c

central composite design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000311

has super-classes

study design^c

centrally registered identifier^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000578

has super-classes

information content entity^c

has part^op some centrally registered identifier symbol^c

has part^op some denotes^op some centrally registered identifier registry^c

centrally registered identifier registry^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000579

has super-classes

data set^c

centrally registered identifier symbol^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000577

has super-classes

symbol^c

part of^op some centrally registered identifier^c

chain-referral sampling^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000512

has super-classes

statistical sampling^c

channel1/channel2 fluorescence intensity ratio^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000210

has super-classes

fold change^c

has numerator^op some fluorescent reporter intensity^c

has denominator^op some fluorescent reporter intensity^c

chi square test^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200200

has super-classes

statistical hypothesis test^c

achieves_planned_objective^op some statistical hypothesis test objective^c

has sub-classes

Pearson's Chi square test of goodness of fit^c, Pearson's Chi square test of independence between categorical variables^c

Chi-square probability distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000229

has super-classes

continuous probability distribution^c

has part^op some number of degrees of freedom^c

Chi-Squared statistic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000030

has super-classes

statistic^c

is_specified_input_of^op some chi square test^c

child-parents trio^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000273

has super-classes

family^c

chromosome coordinate system^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000055

has super-classes

genomic coordinate system^c

has part^op some version number^c

class discovery data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200175

is equivalent to

(has_specified_output^op some clustered data set^c) or (achieves_planned_objective^op some class discovery objective^c)

has super-classes

data transformation^c

has sub-classes

Partial Least Square Discriminant Analysis^c, Partial Least Square regression^c, dimensionality reduction^c, hierarchical clustering^c, k-means clustering^c, k-nearest neighbors^c, principal component regression^c, random forest procedure^c

class discovery objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200178

has super-classes

data transformation objective^c

Cleveland dot plot^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000066

has super-classes

dot plot^c

cloning insert role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000416

has super-classes

role^c

cloning vector^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000737

is equivalent to

material entity^c and (has role^op some cloning vector role^c)

has super-classes

processed material^c

material to be added^c

is_specified_output_of^op some material processing^c

cloning vector role^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000411

has super-classes

material to be added role^c

(inheres in^op some nucleic acid^c) and (realized in^op only recombinant vector cloning^c)

cluster sampling^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000506

has super-classes

systematic sampling^c

clustered data set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000648

is equivalent to

is_specified_output_of^op some class discovery data transformation^c

has super-classes

data set^c

has sub-classes

eigenvalue^c, loadings^c, percentage of variance^c, score^c

Cochran's Q statistic^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000419

has super-classes

measure of heterogeneity^c

Cochran's q test for heterogeneity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000434

has super-classes

test of association between categorical variables^c

has_specified_input^op some Cochran's Q statistic^c and (is about^op some randomized complete block design^c)

has_specified_input^op some Chi-square probability distribution^c

has_specified_input^op some false positive rate^c

achieves_planned_objective^op some association between categorical variables testing objective^c

has_specified_output^op some p-value^c

Cochran-Armitage test for trend^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000148

has super-classes

test of association between categorical variables^c

has_specified_input^op exactly 1 2 by n contingency table^c

has_specified_input^op exactly 1

has_specified_input^op exactly 1

has_specified_input^op some false positive rate^c

achieves_planned_objective^op some association between categorical variables testing objective^c

has_specified_output^op some p-value^c

is disjoint with

Cochran-Mantel-Haenzel test for repeated tests of independence^c

Cochran-Mantel-Haenzel test for repeated tests of independence^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000074

has super-classes

test of association between categorical variables^c

has_specified_input^op exactly 1

has part^op some odds ratio homogeneity hypothesis^c and (has value^dp value true)

has_specified_input^op some false positive rate^c

achieves_planned_objective^op some association between categorical variables testing objective^c

has_specified_input^op exactly 2 dichotomous variable^c

has_specified_input^op min 2

achieves_planned_objective^op some statistical hypothesis test objective^c

has_specified_input^op some Chi-square probability distribution^c

has_specified_output^op some p-value^c

has_specified_output^op some number of degrees of freedom^c

is disjoint with

Cochran-Armitage test for trend^c

coefficient of determination^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000564

has super-classes

measurement datum^c

coefficient of variation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000236

has super-classes

measure of variation^c

cohort^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000203

has super-classes

study group population^c

collecting specimen from organism^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0600005

has super-classes

specimen collection process^c

has_specified_output^op some specimen^c

has_specified_input^op some organism^c

achieves_planned_objective^op some specimen collection objective^c

complete linkage hierarchical clustering^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200044

has super-classes

agglomerative hierarchical clustering^c

complete randomization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000517

has super-classes

group randomization^c

is disjoint with

restricted randomization^c

completely randomized design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000583

has super-classes

study design^c

has part^op some complete randomization^c

compound symmetry covariance structure^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000362

has super-classes

covariance structure^c

has sub-classes

heterogeneous compound symmetry covariance structure^c

conclusion based on data^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001909

has super-classes

information content entity^c

is_supported_by_data^op some data item^c

is_specified_output_of^op some drawing a conclusion based on data^c

has sub-classes

conclusion textual entity^c

is in domain of

is_supported_by_data^op

conclusion textual entity^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000144

has super-classes

textual entity^c

conclusion based on data^c

is_supported_by_data^op some data item^c

is_specified_output_of^op some drawing a conclusion based on data^c

conditional specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000001

has super-classes

directive information entity^c

has sub-classes

rule^c

confidence interval^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000196

has super-classes

data item^c

has part^op some confidence level^c

is about^op some effect size estimate^c

has part^op some upper confidence limit^c and lower confidence limit^c

is_specified_output_of^op some confidence interval calculation^c

is about^op some odds ratio^c or center value^c

has sub-classes

50% confidence interval^c, 90% confidence interval^c, 95% confidence interval^c, 99% confidence interval^c

confidence interval calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000175

has super-classes

data transformation^c

has_specified_input^op some false positive rate^c

has_specified_output^op some confidence interval^c

has_specified_input^op some effect size estimate^c

confidence level^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000561

has super-classes

dimensionless ratio^c

Conover-Iman test of multiple comparisons using rank sums^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000491

has super-classes

multiple testing correction method^c

between group comparison statistical test^c

has_specified_input^op some false positive rate^c

preceded by^op some Kruskal Wallis test^c

has_specified_output^op some p-value^c

achieves_planned_objective^op some multiple testing correction objective^c and between group comparison objective^c

contain function^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000370

has super-classes

function^c

container^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000967

is equivalent to

has function^op some contain function^c

has super-classes

device^c

has sub-classes

flow cell^c, physical store^c

contingency table^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000140

has super-classes

information content entity^c

is about^op exactly 2 categorical variable^c

has sub-classes

2 by 2 contingency table^c, 2 by n contingency table^c

continuant^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000002

is defined by

http://purl.obolibrary.org/obo/bfo.owl

has super-classes

entity^c

has sub-classes

generically dependent continuant^c, independent continuant^c, specifically dependent continuant^c

is in domain of

is_proxy_for^op, participates in^op

is in range of

has participant^op, is_proxy_for^op

continuous multivariate probability distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000538

has super-classes

continuous probability distribution^c

continuous probability distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000067

has super-classes

probability distribution^c

has sub-classes

Chi-square probability distribution^c, F-distribution^c, Gamma distribution^c, Laplace probability distribution^c, Pareto type-I probability distribution^c, Pareto type-II probability distribution^c, Pareto type-III probability distribution^c, Pareto type-IV probability distribution^c, Student's t distribution^c, Weibull probability distribution^c, alpha distribution^c, beta distribution^c, continuous multivariate probability distribution^c, exponential distribution^c, log normal distribution^c, normal distribution^c, studentized range distribution^c

continuous variable^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000251

has super-classes

variable^c

has part^op some scalar measurement datum^c

is disjoint with

categorical variable^c

continuous variable discretization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000213

has super-classes

data transformation^c

executes^op some rule^c

has_specified_input^op some continuous variable^c

has_specified_output^op only polychotomous variable^c

contrast^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000290

has super-classes

data item^c

denotes^op some average value^c and (is about^op some study group population^c and (is denoted by^op some factor level combination^c))

is_specified_input_of^op some model fitting^c

has part^op some contrast weight matrix^c and average value^c

has sub-classes

Helmert contrast^c, polynomial contrast^c, sum contrast^c, treatment contrast^c

contrast estimate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000384

has super-classes

data item^c

(is about^op some contrast^c) and (is_specified_output_of^op some contrast estimation^c)

contrast estimation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000383

has super-classes

data transformation^c

(has_specified_input^op some contrast weight^c) and (has_specified_output^op some contrast estimate^c) and (has_specified_output^op some standard error of a contrast estimate^c)

contrast weight^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000322

has super-classes

data item^c

contrast weight estimate^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000324

has super-classes

model parameter estimate^c

is about^op some contrast weight^c

estimate of^op some statistic^c

contrast weight matrix^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000323

has super-classes

information content entity^c

has part^op some contrast weight^c

is about^op some contrast^c

convenience sampling^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000514

has super-classes

statistical sampling^c

cool function^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000387

has super-classes

function^c

coordinate system^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000010

has super-classes

information content entity^c

is about^op some spatial region^c

has sub-classes

cartesian coordinate system^c, cylindrical coordinate system^c, genomic coordinate system^c, polar coordinate system^c, spherical coordinate system^c

corrected Akaike information criterion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000326

has super-classes

Akaike information criterion^c

correction objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200168

has super-classes

data transformation objective^c

has sub-classes

error correction objective^c

correlation coefficient^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000142

has super-classes

effect size estimate^c

is_specified_input_of^op some confidence interval calculation^c

has numerator^op some covariance^c

has value^dp some () and ()

has denominator^op some is about^op exactly 2 standard deviation^c

is about^op exactly 2 variable^c

has sub-classes

Kendall's correlation coefficient^c, Matthews correlation coefficient^c, Pearson's correlation coefficient^c, Spearman's rank correlation coefficient^c, polychoric correlation coefficient^c, r2 measure of linkage desequilibrium^c

count^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000047

has super-classes

measurement datum^c

has value^dp exactly 1

has sub-classes

fragments per kilobase of transcript per million fragments mapped^c, number of PCR cycle^c, number of cross-validation segments^c, number of degrees of freedom^c, number of orthogonal components^c, number of predictive components^c, reads per kilobase of transcript per million fragments mapped^c, sequence read count^c, study group population size^c

is in range of

has order in sequence^op

covariance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000301

has super-classes

measurement datum^c

is about^op exactly 2 variable^c

is about^op min 2 expected value^c

covariance matrix^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000525

has super-classes

information content entity^c

covariance structure^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000346

has super-classes

statistical model^c

is model for^op some covariance^c

is about^op some covariance^c

part of^op some regression model^c

has sub-classes

Ante-dependence covariance structure^c, Factor Analytic covariance structure^c, Huynh-Feldt covariance structure^c, Matern function anisotropic covariance structure^c, Toeplitz covariance structure^c, banded Toeplitz covariance structure^c, banded heterogeneous Toeplitz covariance structure^c, compound symmetry covariance structure^c, first order autoregressive covariance structure^c, first order autoregressive moving average covariance structure^c, heterogeneous Toeplitz covariance structure^c, rational quadratic anisotropic covariance structure^c, scaled identity covariance structure^c, spatial exponential anisotropic covariance structure^c, spatial exponential geometric anisotropic covariance structure^c, spatial gaussian geometric anisotropic covariance structure^c, spatial linear geometric anisotropic covariance structure^c, spatial spherical geometric anisotropic covariance structure^c, unstructured covariance structure^c

credible interval^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000455

has super-classes

data item^c

is about^op some model parameter estimate^c

has part^op some upper confidence limit^c and lower confidence limit^c

has sub-classes

95% credible interval^c, 99% credible interval^c

cross over design^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0500003

has super-classes

repeated measure design^c

time series design^c

block design^c

has part^op some within subject comparison objective^c

declares^op some (study design independent variable^c and blocking variable^c) and (is about^op some time sampled measurement data set^c)

culture medium^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000079

has super-classes

processed material^c

cultured cell^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CL_0000010

has super-classes

experimentally modified cell in vitro^c

(is_specified_output_of^op some establishing cell culture^c) or (derives from^op some is_specified_output_of^op some establishing cell culture^c)

cultured cell population^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0100060

has super-classes

processed material^c

has grain^op only cultured cell^c

is_specified_output_of^op some maintaining cell culture^c

has grain^op some cultured cell^c

curation status specification^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000078

is equivalent to

{ ready for release , example to be eventually removed , metadata incomplete , uncurated , pending final vetting , metadata complete , organizational term , requires discussion , to be replaced with external ontology term }

has super-classes

data about an ontology part^c

has members

example to be eventually removedⁿⁱ, requires discussionⁿⁱ, to be replaced with external ontology termⁿⁱ

cylindrical coordinate system^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000015

has super-classes

coordinate system^c

cytometer^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0400137

has super-classes

measurement device^c

(has part^op some light source^c) and (has part^op some optical filter^c) and (has part^op some photodetector^c)

has function^op some measure function^c

has sub-classes

flow cytometer^c

cytometry assay^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001977

is equivalent to

assay^c and ((realizes^op some evaluant role^c and (role of^op some cell^c)) and (has_specified_input^op some cell^c and (has role^op some evaluant role^c)))

has super-classes

assay^c

has sub-classes

flow cytometry assay^c

data about an ontology part^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000102

has super-classes

data item^c

has sub-classes

curation status specification^c

data distribution^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000161

has super-classes

information content entity^c

is denoted by^op some measure of variation^c

is denoted by^op some measure of central tendency^c

data imputation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000518

has super-classes

data transformation^c

has sub-classes

k-nearest neighbour data imputation^c, last observation carried forward data imputation^c, multivariate imputation with chained equations^c, regression data imputation^c, substitution by the mean data imputation^c

data item^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000027

has super-classes

information content entity^c

has sub-classes

PLS weight^c, allele frequency^c, cartesian spatial coordinate datum^c, confidence interval^c, contrast^c, contrast estimate^c, contrast weight^c, credible interval^c, data about an ontology part^c, data set^c, design matrix^c, deviance^c, empirical measure^c, estimated breeding value^c, factor level^c, genetic characteristics information^c, genetic inheritance model^c, genomic coordinate datum^c, kurtosis^c, log likelihood^c, lower confidence limit^c, measurement datum^c, model parameter^c, model term^c, observed risk^c, outlier^c, posterior probability distribution^c, probability distribution location parameter^c, probability distribution shape parameter^c, quantile^c, quantitative confidence value^c, ratio^c, regression coefficient^c, residual^c, residual mean square^c, risk difference^c, skewness^c, statistical error^c, statistical model^c, statistical test power^c, sub sub-plot number^c, sub-plot number^c, survival curve^c, upper confidence limit^c, variable^c, variable importance in projection^c, whole plot number^c, ΔRn^c

is in range of

is_supported_by_data^op

data normalization objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200167

has super-classes

data transformation objective^c

data set^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000100

has super-classes

data item^c

has sub-classes

centrally registered identifier registry^c, clustered data set^c, data set of features^c, error corrected data set^c, factor level combination^c, gene list^c, genotype data set^c, normalized data set^c, pedigree data set^c, time sampled measurement data set^c

data set of features^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000649

is equivalent to

is_specified_output_of^op some descriptive statistical calculation data transformation^c

has super-classes

data set^c

has sub-classes

mode^c

data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200000

is equivalent to

achieves_planned_objective^op some data transformation objective^c

has super-classes

planned process^c

has_specified_output^op some data item^c

has_specified_input^op some data item^c

has_specified_output^op only data item^c

has_specified_input^op only data item^c

realizes^op some concretizes^op some algorithm^c and (has part^op some objective specification^c)

has sub-classes

ANCOVA^c, Hotelling-Lawley Trace test^c, McNemar test^c, Pillai's trace test^c, Rao's score test^c, Roy’s Maximum Root test^c, SIMPLS^c, Wald test^c, Wilk's Lambda test^c, averaging data transformation^c, binary classification^c, breeding value estimation^c, cartesian product^c, center calculation data transformation^c, class discovery data transformation^c, confidence interval calculation^c, continuous variable discretization^c, contrast estimation^c, data imputation^c, degree of freedom approximation^c, degree of freedom calculation^c, descriptive statistical calculation data transformation^c, differential expression analysis data transformation^c, error correction data transformation^c, improved Kernel PLS^c, interim analysis^c, meta analysis^c, model fitting^c, model parameter estimation^c, multivariate analysis of variance^c, non-iterative Partial Least Squares^c, normalization data transformation^c, partitioning data transformation^c, permutation numbering^c, ranking^c, regression analysis method^c, repeated measure analysis^c, sampling from a probability distribution^c, singular value decomposition^c, statistical hypothesis test^c, statistical model selection^c, statistical model term testing^c, statistical test power analysis^c, survival analysis data transformation^c

data transformation objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200166

has super-classes

objective specification^c

has sub-classes

averaging objective^c, center calculation objective^c, class discovery objective^c, correction objective^c, data normalization objective^c, descriptive statistical calculation objective^c, differential expression analysis objective^c, genomic selection objective^c, group comparison objective^c, partitioning objective^c, statistical hypothesis test objective^c, survival analysis objective^c

data visualization^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200111

has super-classes

planned process^c

has_specified_input^op only data item^c

has_specified_output^op some graph^c or image^c

has_specified_input^op some data item^c

has_specified_output^op only graph^c or image^c

has sub-classes

gene list visualization^c

date^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000093

has super-classes

time stamped measurement datum^c

datum label^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000009

has super-classes

information content entity^c

has sub-classes

categorical label^c, measurement unit label^c

decile^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000292

has super-classes

quantile^c

degree of freedom approximation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000472

has super-classes

data transformation^c

has sub-classes

Kenward-Roger degree of freedom approximation^c, Satterthwaite degree of freedom approximation^c, between-within denominator degrees of freedom approximation^c

degree of freedom calculation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000585

has super-classes

data transformation^c

has_specified_output^op some number of degrees of freedom^c

part of^op some statistical hypothesis test^c

denominator degrees of freedom^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000527

has super-classes

number of degrees of freedom^c

is_specified_input_of^op some ANOVA^c

deoxyribonucleic acid^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_16991

has super-classes

nucleic acid^c

DerSimonian-Laird estimator^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000429

has super-classes

statistic estimator^c

estimate of^op some statistic^c

estimate of^op some Tau squared^c

descriptive statistical calculation data transformation^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200184

is equivalent to

(has_specified_output^op some data set of features^c) or (achieves_planned_objective^op some descriptive statistical calculation objective^c)

has super-classes

data transformation^c

has sub-classes

median calculation^c, mode calculation^c

descriptive statistical calculation objective^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0200078

has super-classes

data transformation objective^c

design matrix^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000289

has super-classes

data item^c

has part^op some data item^c and (denotes^op some study design independent variable^c)

denotes^op some study design^c

part of^op some statistical model^c

is_specified_input_of^op some data transformation^c or model fitting^c

deviance^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000377

has super-classes

data item^c

is about^op some statistical model^c

deviance information criterion^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/STATO_0000378

has super-classes

measurement datum^c

is about^op some statistical model^c

is_specified_input_of^op some statistical model selection^c

device^c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000968

has super-classes

processed material^c

is_specified_output_of^op some material processing^c

has function^op some function^c

has sub-classes

assay array^c, container^c, environmental control device^c, light emission device^c, material separation device^c, measurement device^c