made by pyLODE 2.10.0

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Metadata

URI
http://purl.org/ppeo/PPEO.owl
Creator(s)
Bruno Vasques Costa
Cyril Pommier
Daniel Faria
Evangelia Papoutsoglou
Guillaume Cornut
Hanna Cwiek-Kupczynska
Ines Chaves
Manuel Ruiz
Marie Angélique Laporte
Pascal Neveu
Pierre Larmande
Ontology RDF
RDF (turtle)

Table of Contents

  1. Classes
  2. Object Properties
  3. Functional Properties
  4. Datatype Properties
  5. Annotation Properties
  6. Named Individuals
  7. Namespaces
  8. Legend

Overview

Pictures say 1,000 words
Figure 1: Ontology overview

Classes

GPS locationc # Classes

URI http://purl.org/ppeo/PPEO.owl#GPS_location
Super-classes locationc

biological materialc # Classes

URI http://purl.org/ppeo/PPEO.owl#biological_material
Description

An organism that was the subject of the study and/or was observed in an observation unit.

Restrictions has genusfp max 1
has material identifierdp exactly 1
has speciesfp max 1
has material sourceop max 1 material sourcec
has taxon identifierdp exactly 1
has locationop max 1 GPS locationc
In domain of has subtaxon authoritydp
has taxon identifierdp
has preprocessingdp
has genusfp
has material sourceop
has subtaxondp
has country of originop
has speciesfp
has species authorityfp
has infraspecific namedp
In range of has biological materialop

countryc # Classes

URI http://purl.org/ppeo/PPEO.owl#country
Description

A country in the world that either presently exists (i.e. is recognized in status by most entities) or existed at the time of the study.

Restrictions has namedp some xsd:stringc
In domain of has country codedp
In range of has countryop
has country of originop

data filec # Classes

URI http://purl.org/ppeo/PPEO.owl#data_file
Description

A description of and link to a file or data stream holding some or all of the data described by the MIAPPE submission.

Restrictions has versionfp exactly 1
has descriptiondp exactly 1
has digital locationdp exactly 1
In domain of has observationop
has versionfp
has digital locationdp
In range of has data fileop

environmentc # Classes

URI http://purl.org/ppeo/PPEO.owl#environment
Description

The set of environmental parameters or experimental conditions that were kept constant during the study and did not change betweeen observation units or assays.

Restrictions has environment parameterop some environment parameterc
In domain of has environment parameterop
In range of has environmentop

environment parameterc # Classes

URI http://purl.org/ppeo/PPEO.owl#environment_parameter
Description

A parameter of the environment which is represented by a name and a value.

Restrictions has namedp exactly 1
has valuedp exactly 1
In range of has environment parameterop

eventc # Classes

URI http://purl.org/ppeo/PPEO.owl#event
Description

A discrete change to the state of one or more observation units that happened at a given point in time, be it deliberate or inadvertent.

Restrictions has external identifierdp max 1
has descriptiondp max 1
has date-timedp some xsd:dateTimec
has typedp exactly 1
In range of has eventop

experimental designc # Classes

URI http://purl.org/ppeo/PPEO.owl#experimental_design
Restrictions has typedp max 1
has descriptiondp exactly 1
In range of has experimental designop

factorc # Classes

URI http://purl.org/ppeo/PPEO.owl#factor
Description

A condition that varies between observation units, by taking different values or modalities, assessing the effect of which is the goal of the study. A factor may be biotic (pest, disease interaction) or abiotic (treatment, cultural practice) in nature. It must have at least two values or modalities.

Restrictions has modalityop min 2 factor valuec
has descriptiondp max 1
has typedp exactly 1
In domain of has modalityop
In range of has factorop
is modality ofop

factor valuec # Classes

URI http://purl.org/ppeo/PPEO.owl#factor_value
Description

A value or modality of a factor.

Restrictions has valuedp exactly 1
is modality ofop exactly 1 factorc
In domain of is modality ofop
In range of has modalityop
has factor valueop

growth facilityc # Classes

URI http://purl.org/ppeo/PPEO.owl#growth_facility
Description

A facility in which plants can be grown, such as a field or greenhouse.

Restrictions has descriptiondp exactly 1
has typedp max 1
In range of has growth facilityop

institutionc # Classes

URI http://purl.org/ppeo/PPEO.owl#institution
Description

An institution (academic or industrial) involved in the investigation or study.

Restrictions has namedp exactly 1
has locationop some named locationc
In domain of has institute codefp
In range of has affiliationop
has contact institutionop
has participating institutionop

investigationc # Classes

URI http://purl.org/ppeo/PPEO.owl#investigation
Description

A research programme with defined aims, which can vary in scale from a single experiment, to a grant-funded programme or various components comprising a peer-reviewed publication.

Restrictions has descriptiondp max 1
has partop some studyc
has MIAPPE versiondp exactly 1
has namedp exactly 1
has person with roleop some rolec
has identifierdp max 1
In domain of has public release datefp
has licensefp
has submission datefp
has MIAPPE versiondp

locationc # Classes

URI http://purl.org/ppeo/PPEO.owl#location
Description

A physical location, typically on planet Earth, identified by GPS coordinates and/or name and address.

Sub-classes named locationc
GPS locationc
In domain of has longitudefp
has uncertaintyfp
has addressfp
has latitudefp
has countryop
has altitudefp
In range of has locationop

material sourcec # Classes

URI http://purl.org/ppeo/PPEO.owl#material_source
Description

An organism from which the organism(s) used in the study were derived. It should be identified with a unique external identifier (such as germplasm accession number) and possibly a DOI.

Restrictions has DOIfp max 1
has material identifierdp exactly 1
has locationop max 1 GPS locationc
has descriptiondp max 1
In range of has material sourceop

methodc # Classes

URI http://purl.org/ppeo/PPEO.owl#method
Restrictions has associated publicationdp max 1
has descriptiondp max 1
has external identifierdp max 1
has namedp exactly 1
In range of has methodop

named locationc # Classes

URI http://purl.org/ppeo/PPEO.owl#named_location
Super-classes locationc

observationc # Classes

URI http://purl.org/ppeo/PPEO.owl#observation
Restrictions has variableop exactly 1 observed variablec
has observed subjectop exactly 1 ()
has valuedp only (xsd:floatc or xsd:intc or xsd:stringc)
In domain of has seasonfp
has variableop
has observed subjectop
In range of is subject of observationop
has observationop

observation levelc # Classes

URI http://purl.org/ppeo/PPEO.owl#observation_level
Super-classes spatial distribution typec
Restrictions part ofop min 1 observation level hierarchyc
In domain of has superlevelop
has sublevelop
In range of has observation levelop
has superlevelop
has sublevelop

observation level hierarchyc # Classes

URI http://purl.org/ppeo/PPEO.owl#observation_level_hierarchy
Restrictions has partop some observation levelc
In range of has observation level hierarchyop

observation unitc # Classes

URI http://purl.org/ppeo/PPEO.owl#observation_unit
Restrictions has biological materialop some biological materialc
has observation levelop exactly 1 observation levelc
has internal identifierdp exactly 1
part ofop some studyc
In domain of has factor valueop
has spatial distributionop
has observation levelop
In range of derives fromop

observed variablec # Classes

URI http://purl.org/ppeo/PPEO.owl#observed_variable
Restrictions has scaleop exactly 1 scalec
has namedp max 1
part ofop some studyc
has traitop exactly 1 traitc
has external identifierdp max 1
has internal identifierdp exactly 1
has methodop exactly 1 methodc
In domain of has methodop
has time scaledp
has scaleop
has traitop
In range of has variableop

personc # Classes

URI http://purl.org/ppeo/PPEO.owl#person
Restrictions has roleop some rolec
has namedp exactly 1
has e-mail contactdp max 1
has affiliationop some institutionc
has identifierdp max 1
In domain of has roleop
has affiliationop
has e-mail contactdp
In range of is role ofop

rolec # Classes

URI http://purl.org/ppeo/PPEO.owl#role
Restrictions is role ofop some personc
has namedp exactly 1
is role of person inop some (investigationc or studyc)
In domain of is role of person inop
is role ofop
In range of has roleop
has person with roleop

samplec # Classes

URI http://purl.org/ppeo/PPEO.owl#sample
Restrictions has descriptiondp max 1
has plant structure development stagedp max 1
has collection datedp exactly 1
derives fromop exactly 1 observation unitc
has internal identifierdp exactly 1
has plant anatomical entitydp exactly 1
has external identifierdp only (xsd:anyURIc or xsd:stringc)
In domain of has plant anatomical entitydp
has plant structure development stagedp
has collection datedp
derives fromop

scalec # Classes

URI http://purl.org/ppeo/PPEO.owl#scale
Restrictions has external identifierdp max 1
has namedp exactly 1
In range of has scaleop

spatial coordinatec # Classes

URI http://purl.org/ppeo/PPEO.owl#spatial_coordinate
Super-classes spatial distribution typec
Members http://purl.org/ppeo/PPEO.owl#x_m
http://purl.org/ppeo/PPEO.owl#z
http://purl.org/ppeo/PPEO.owl#z_m
http://purl.org/ppeo/PPEO.owl#latitude
http://purl.org/ppeo/PPEO.owl#column
http://purl.org/ppeo/PPEO.owl#longitude
http://purl.org/ppeo/PPEO.owl#y_m
http://purl.org/ppeo/PPEO.owl#x
http://purl.org/ppeo/PPEO.owl#altitude
http://purl.org/ppeo/PPEO.owl#y
http://purl.org/ppeo/PPEO.owl#row

spatial distributionc # Classes

URI http://purl.org/ppeo/PPEO.owl#spatial_distribution
Restrictions has spatial distribution typeop exactly 1 spatial distribution typec
has valuedp exactly 1
In domain of has spatial distribution typeop
In range of has spatial distributionop

spatial distribution typec # Classes

URI http://purl.org/ppeo/PPEO.owl#spatial_distribution_type
Restrictions has typedp exactly 1
Sub-classes spatial coordinatec
observation levelc
In range of has spatial distribution typeop

studyc # Classes

URI http://purl.org/ppeo/PPEO.owl#study
Description

A study (or experiment) comprises a series of assays (or measurements) of one or more types, undertaken to answer a particular biological question. It is recommended that a Study have a description.

Restrictions has namedp exactly 1
has end date-timefp max 1
has contact institutionop exactly 1 institutionc
has partop some observed variablec
has start date-timefp exactly 1
has partop some observation unitc
has cultural practicesdp max 1
part ofop some investigationc
has biological materialop some biological materialc
has growth facilityop exactly 1 growth facilityc
has environmentop max 1 environmentc
has locationop exactly 1 named locationc
has observation level hierarchyop max 1 observation level hierarchyc
has descriptiondp max 1
has experimental designop exactly 1 experimental designc
has observation unit descriptiondp exactly 1
has identifierdp max 1
In domain of has experimental designop
has experimental design mapdp
has observation level hierarchyop
has observation unit descriptiondp
has contact institutionop
has factorop
has growth facilityop
has cultural practicesdp
has data fileop
has environmentop

traitc # Classes

URI http://purl.org/ppeo/PPEO.owl#trait
Description

Name of the (plant or environmental) trait under observation

Restrictions has namedp exactly 1
has external identifierdp max 1
In range of has traitop

Object Properties

derives fromop # OPs

URI http://purl.org/ppeo/PPEO.owl#derivesFrom
Domain(s) samplec
Range(s) http://purl.org/ppeo/PPEO.owl#observation_unitc

has affiliationop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasAffiliation
Domain(s) personc
Range(s) http://purl.org/ppeo/PPEO.owl#institutionc

has biological materialop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasBiologicalMaterial
Domain(s) (observation unitc or studyc)
Range(s) http://purl.org/ppeo/PPEO.owl#biological_materialc

has contact institutionop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasContactInstitution
Domain(s) studyc
Range(s) http://purl.org/ppeo/PPEO.owl#institutionc

has countryop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasCountry
Domain(s) locationc
Range(s) http://purl.org/ppeo/PPEO.owl#countryc

has country of originop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasCountryOfOrigin
Domain(s) biological materialc
Range(s) http://purl.org/ppeo/PPEO.owl#countryc

has data fileop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasDataFile
Domain(s) studyc
Range(s) http://purl.org/ppeo/PPEO.owl#data_filec

has environmentop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasEnvironment
Domain(s) studyc
Range(s) http://purl.org/ppeo/PPEO.owl#environmentc

has environment parameterop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasEnvironmentParameter
Domain(s) environmentc
Range(s) http://purl.org/ppeo/PPEO.owl#environment_parameterc

has eventop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasEvent
Domain(s) (observation unitc or studyc)
Range(s) http://purl.org/ppeo/PPEO.owl#eventc

has experimental designop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasExperimentalDesign
Domain(s) studyc
Range(s) http://purl.org/ppeo/PPEO.owl#experimental_designc

has factorop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasFactor
Domain(s) studyc
Range(s) http://purl.org/ppeo/PPEO.owl#factorc

has factor valueop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasFactorValue
Domain(s) observation unitc
Range(s) http://purl.org/ppeo/PPEO.owl#factor_valuec

has growth facilityop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasGrowthFacility
Domain(s) studyc
Range(s) http://purl.org/ppeo/PPEO.owl#growth_facilityc

has locationop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasLocation
Range(s) http://purl.org/ppeo/PPEO.owl#locationc

has material sourceop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasMaterialSource
Domain(s) biological materialc
Range(s) http://purl.org/ppeo/PPEO.owl#material_sourcec

has methodop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasMethod
Domain(s) observed variablec
Range(s) http://purl.org/ppeo/PPEO.owl#methodc

has modalityop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasModality
Inverse properties is modality ofop
Domain(s) factorc
Range(s) http://purl.org/ppeo/PPEO.owl#factor_valuec

has observationop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasObservation
Domain(s) data filec
Range(s) http://purl.org/ppeo/PPEO.owl#observationc

has observation levelop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasObservationLevel
Domain(s) observation unitc
Range(s) http://purl.org/ppeo/PPEO.owl#observation_levelc

has observation level hierarchyop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasObservationLevelHierarchy
Domain(s) studyc
Range(s) http://purl.org/ppeo/PPEO.owl#observation_level_hierarchyc

has observed subjectop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasObservedSubject
Inverse properties is subject of observationop
Domain(s) observationc
Range(s) http://purl.org/ppeo/PPEO.owl#observation_unit http://purl.org/ppeo/PPEO.owl#sample

has partop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasPart
Inverse properties part ofop

has participating institutionop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasParticipatingInstitution
Domain(s) (investigationc or studyc)
Range(s) http://purl.org/ppeo/PPEO.owl#institutionc

has person with roleop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasPersonWithRole
Inverse properties is role of person inop
Domain(s) (investigationc or studyc)
Range(s) http://purl.org/ppeo/PPEO.owl#rolec

has roleop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasRole
Inverse properties is role ofop
Domain(s) personc
Range(s) http://purl.org/ppeo/PPEO.owl#rolec

has scaleop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasScale
Domain(s) observed variablec
Range(s) http://purl.org/ppeo/PPEO.owl#scalec

has spatial distributionop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasSpatialDistribution
Domain(s) observation unitc
Range(s) http://purl.org/ppeo/PPEO.owl#spatial_distributionc

has spatial distribution typeop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasSpatialDistributionType
Domain(s) spatial distributionc
Range(s) http://purl.org/ppeo/PPEO.owl#spatial_distribution_typec

has sublevelop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasSublevel
Inverse properties has superlevelop
Domain(s) observation levelc
Range(s) http://purl.org/ppeo/PPEO.owl#observation_levelc

has superlevelop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasSuperlevel
Domain(s) observation levelc
Range(s) http://purl.org/ppeo/PPEO.owl#observation_levelc

has traitop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasTrait
Domain(s) observed variablec
Range(s) http://purl.org/ppeo/PPEO.owl#traitc

has variableop # OPs

URI http://purl.org/ppeo/PPEO.owl#hasVariable
Domain(s) observationc
Range(s) http://purl.org/ppeo/PPEO.owl#observed_variablec

is modality ofop # OPs

URI http://purl.org/ppeo/PPEO.owl#isModalityOf
Domain(s) factor valuec
Range(s) http://purl.org/ppeo/PPEO.owl#factorc

is role ofop # OPs

URI http://purl.org/ppeo/PPEO.owl#isRoleOf
Domain(s) rolec
Range(s) http://purl.org/ppeo/PPEO.owl#personc

is role of person inop # OPs

URI http://purl.org/ppeo/PPEO.owl#isRoleOfPersonIn
Domain(s) rolec
Range(s) http://purl.org/ppeo/PPEO.owl#investigation http://purl.org/ppeo/PPEO.owl#study

is subject of observationop # OPs

URI http://purl.org/ppeo/PPEO.owl#isSubjectOfObservation
Domain(s) (observation unitc or samplec)
Range(s) http://purl.org/ppeo/PPEO.owl#observationc

part ofop # OPs

URI http://purl.org/ppeo/PPEO.owl#partOf

Functional Properties

has addressfp # FPs

URI http://purl.org/ppeo/PPEO.owl#hasAddress
Domain(s) locationc
Range(s) xsd:stringc

has altitudefp # FPs

URI http://purl.org/ppeo/PPEO.owl#hasAltitude
Description

The altitude of a location in metres

Domain(s) locationc
Range(s) xsd:floatc

has DOIfp # FPs

URI http://purl.org/ppeo/PPEO.owl#hasDOI
Description

An external identifier that is specifically a DOI, given either as just the DOI code (string) or as an URI. The entity <=> DOI relation should be bijective.

Super-properties has external identifierdp
Range(s) http://www.w3.org/2001/XMLSchema#anyURI http://www.w3.org/2001/XMLSchema#string

has end date-timefp # FPs

URI http://purl.org/ppeo/PPEO.owl#hasEndDateTime
Super-properties has date-timedp
Range(s) xsd:dateTimec

has entry numberfp # FPs

URI http://purl.org/ppeo/PPEO.owl#hasEntryNumber
Description

Used in BrAPI Phenotypes call

Range(s) xsd:intc

has entry typefp # FPs

URI http://purl.org/ppeo/PPEO.owl#hasEntryType
Description

Used in BrAPI Phenotypes call

Range(s) xsd:stringc

has genusfp # FPs

URI http://purl.org/ppeo/PPEO.owl#hasGenus
Domain(s) biological materialc
Range(s) xsd:stringc

has institute codefp # FPs

URI http://purl.org/ppeo/PPEO.owl#hasInstituteCode
Description

A code or acronym of an institution.

Super-properties has external identifierdp
Domain(s) institutionc
Range(s) xsd:stringc

has latitudefp # FPs

URI http://purl.org/ppeo/PPEO.owl#hasLatitude
Description

The latitude of a location in degrees, in the decimal system

Domain(s) locationc
Range(s) xsd:floatc

has licensefp # FPs

URI http://purl.org/ppeo/PPEO.owl#hasLicense
Domain(s) investigationc
Range(s) xsd:stringc

has longitudefp # FPs

URI http://purl.org/ppeo/PPEO.owl#hasLongitude
Description

The longitude of a location in degrees, in the decimal system

Domain(s) locationc
Range(s) xsd:floatc

has public release datefp # FPs

URI http://purl.org/ppeo/PPEO.owl#hasPublicReleaseDate
Super-properties has date-timedp
Domain(s) investigationc
Range(s) xsd:dateTimec

has seasonfp # FPs

URI http://purl.org/ppeo/PPEO.owl#hasSeason
Domain(s) observationc
Range(s) xsd:stringc

has speciesfp # FPs

URI http://purl.org/ppeo/PPEO.owl#hasSpecies
Domain(s) biological materialc
Range(s) xsd:stringc

has species authorityfp # FPs

URI http://purl.org/ppeo/PPEO.owl#hasSpeciesAuthority
Domain(s) biological materialc
Range(s) xsd:stringc

has start date-timefp # FPs

URI http://purl.org/ppeo/PPEO.owl#hasStartDateTime
Super-properties has date-timedp
Range(s) xsd:dateTimec

has submission datefp # FPs

URI http://purl.org/ppeo/PPEO.owl#hasSubmissionDate
Super-properties has date-timedp
Domain(s) investigationc
Range(s) xsd:dateTimec

has uncertaintyfp # FPs

URI http://purl.org/ppeo/PPEO.owl#hasUncertainty
Domain(s) locationc
Range(s) xsd:floatc

has versionfp # FPs

URI http://purl.org/ppeo/PPEO.owl#hasVersion
Domain(s) data filec
Range(s) xsd:stringc

is activefp # FPs

URI http://purl.org/ppeo/PPEO.owl#isActive
Range(s) xsd:booleanc

Datatype Properties

has abbreviationdp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasAbbreviation
Range(s) xsd:stringc

has associated publicationdp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasAssociatedPublication
Domain(s) (investigationc or methodc)
Range(s) http://www.w3.org/2001/XMLSchema#anyURI http://www.w3.org/2001/XMLSchema#string

has collection datedp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasCollectionDate
Super-properties has date-timedp
Domain(s) samplec
Range(s) xsd:dateTimec

has country codedp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasCountryCode
Description

An ISO 3166-1 country code with either 2 or 3 letters (alpha-2 or alpha-3).

Super-properties has external identifierdp
Domain(s) countryc
Range(s) xsd:stringc

has cultural practicesdp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasCulturalPractices
Domain(s) studyc
Range(s) xsd:stringc

has database identifierdp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasDatabaseId
Description

An external identifier that is specifically a database identifier.

Super-properties has external identifierdp
Range(s) http://www.w3.org/2001/XMLSchema#anyURI http://www.w3.org/2001/XMLSchema#string

has date-timedp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasDateTime
Range(s) xsd:dateTimec

has descriptiondp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasDescription
Range(s) xsd:stringc

has digital locationdp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasDigitalLocation
Description

The location of the file in the form of a URI or, if the file is contained within a local MIAPPE submission (e.g. ISA-Tab), a path or file name.

Domain(s) data filec
Range(s) http://www.w3.org/2001/XMLSchema#anyURI http://www.w3.org/2001/XMLSchema#string

has e-mail contactdp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasEmailContact
Description

The e-mail address of a person

Domain(s) personc
Range(s) xsd:stringc

has experimental design mapdp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasExperimentalDesignMap
Description

A map of the experimental design of the study, in gis or excel

Domain(s) studyc
Range(s) http://www.w3.org/2001/XMLSchema#anyURI http://www.w3.org/2001/XMLSchema#string

has external identifierdp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasExternalIdentifier
Description

An identifier from another public resource, such as an ontology or database, either in the form of an accession number, or in the form of a URI. An external identifier should be globally unique.

Super-properties has identifierdp
Range(s) http://www.w3.org/2001/XMLSchema#anyURI http://www.w3.org/2001/XMLSchema#string

has germplasm accession numberdp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasGermplasmAccessionNumber
Description

A unique identifier for a germplasm.

Super-properties has material identifierdp has external identifierdp
Domain(s) (biological materialc or material sourcec)
Range(s) http://www.w3.org/2001/XMLSchema#anyURI http://www.w3.org/2001/XMLSchema#string

has identifierdp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasIdentifier
Range(s) http://www.w3.org/2001/XMLSchema#anyURI http://www.w3.org/2001/XMLSchema#string

has infraspecific namedp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasInfraspecificName
Description

Name of any subtaxa level, including variety, crossing name, etc. It can be used to store any additional taxonomic identifier. Either free text description or key-value pair list format (the key is the name of the rank and the value is the value of the rank). Ranks can be among the following terms: subspecies, cultivar, variety, subvariety, convariety, group, subgroup, hybrid, line, form, subform. For MCPD compliance, the following abbreviations are allowed: ‘subsp.’ (subspecies); ‘convar.’ (convariety); ‘var.’ (variety); ‘f.’ (form); ‘Group’ (cultivar group).

Domain(s) biological materialc
Range(s) xsd:stringc

has internal identifierdp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasInternalIdentifier
Description

An identifier used internally, either only in the MIAPPE submission itself, or also on a non-public database whence the information was retrieved. An internal identifier need only be unique among entities of the same type within a MIAPPE submission.

Super-properties has identifierdp
Range(s) http://www.w3.org/2001/XMLSchema#anyURI http://www.w3.org/2001/XMLSchema#string

has MIAPPE versiondp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasMIAPPEVersion
Domain(s) investigationc
Range(s) xsd:stringc

has material identifierdp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasMaterialIdentifier
Description

An identifier used specifically for biological materials (and their sources) which can be internal or external. For material sources, it usually follows one of two forms: a key-value pair comprising the name/identifer of the repository from which the material was sourced plus the accession number of the repository for that material, or, where an accession number has not been assigned, but the material has been derived from the crossing of known accessions, "mother_accession X father_accession" (father_accession can be "UNKNOWN").

Super-properties has identifierdp
Domain(s) (biological materialc or material sourcec)
Range(s) http://www.w3.org/2001/XMLSchema#anyURI http://www.w3.org/2001/XMLSchema#string

has namedp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasName
Range(s) xsd:stringc

has observation unit descriptiondp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasObservationUnitDescription
Domain(s) studyc
Range(s) xsd:stringc

has plant anatomical entitydp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasPlantAnatomicalEntity
Domain(s) samplec
Range(s) http://www.w3.org/2001/XMLSchema#anyURI http://www.w3.org/2001/XMLSchema#string

has plant structure development stagedp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasPlantStructureDevelopmentStage
Domain(s) samplec
Range(s) http://www.w3.org/2001/XMLSchema#anyURI http://www.w3.org/2001/XMLSchema#string

has preprocessingdp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasPreprocessing
Domain(s) biological materialc
Range(s) http://www.w3.org/2001/XMLSchema#anyURI http://www.w3.org/2001/XMLSchema#string

has subtaxondp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasSubtaxon
Domain(s) biological materialc
Range(s) xsd:stringc

has subtaxon authoritydp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasSubtaxonAuthority
Domain(s) biological materialc
Range(s) xsd:stringc

has taxon identifierdp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasTaxonIdentifier
Description

An external identifier for a taxon that is either an NCBI Taxon identifier or an equivalent.

Super-properties has external identifierdp
Domain(s) biological materialc
Range(s) http://www.w3.org/2001/XMLSchema#anyURI http://www.w3.org/2001/XMLSchema#string

has time scaledp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasTimeScale
Domain(s) observed variablec
Range(s) xsd:stringc

has typedp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasType
Range(s) http://www.w3.org/2001/XMLSchema#anyURI http://www.w3.org/2001/XMLSchema#string

has valuedp # DPs

URI http://purl.org/ppeo/PPEO.owl#hasValue

Annotation Properties

has BrAPI synonymap # APs

URI http://purl.org/ppeo/PPEO.owl#hasBrAPISynonym

has exact synonymap # APs

URI http://purl.org/ppeo/PPEO.owl#hasExactSynonym

has ISA synonymap # APs

URI http://purl.org/ppeo/PPEO.owl#hasISASynonym

has MIAPPE synonymap # APs

URI http://purl.org/ppeo/PPEO.owl#hasMIAPPESynonym

has ontology recommendationap # APs

URI http://purl.org/ppeo/PPEO.owl#hasOntologyRecommendation

has related synonymap # APs

URI http://purl.org/ppeo/PPEO.owl#hasRelatedSynonym

Named Individuals

altitudeni

Class(es)
http://purl.org/ppeo/PPEO.owl#spatial_coordinate
URI http://purl.org/ppeo/PPEO.owl#altitude
Description The global spatial coordinate altitude (in meters)

columnni

Class(es)
http://purl.org/ppeo/PPEO.owl#spatial_coordinate
URI http://purl.org/ppeo/PPEO.owl#column
Description The local spatial coordinate identifying the column

latitudeni

Class(es)
http://purl.org/ppeo/PPEO.owl#spatial_coordinate
URI http://purl.org/ppeo/PPEO.owl#latitude
Description The global spatial coordinate latitude (in degrees in the decimal system)

longitudeni

Class(es)
http://purl.org/ppeo/PPEO.owl#spatial_coordinate
URI http://purl.org/ppeo/PPEO.owl#longitude
Description The global spatial coordinate latitude (in degrees in the decimal system)

rowni

Class(es)
http://purl.org/ppeo/PPEO.owl#spatial_coordinate
URI http://purl.org/ppeo/PPEO.owl#row
Description The local spatial coordinate identifying the row

xni

Class(es)
http://purl.org/ppeo/PPEO.owl#spatial_coordinate
URI http://purl.org/ppeo/PPEO.owl#x
Description The local spatial coordinate x (numeric, discrete)

x_mni

Class(es)
http://purl.org/ppeo/PPEO.owl#spatial_coordinate
URI http://purl.org/ppeo/PPEO.owl#x_m
Description The local spatial coordinate x (in meters)

yni

Class(es)
http://purl.org/ppeo/PPEO.owl#spatial_coordinate
URI http://purl.org/ppeo/PPEO.owl#y
Description The local spatial coordinate y (numeric, discrete)

y_mni

Class(es)
http://purl.org/ppeo/PPEO.owl#spatial_coordinate
URI http://purl.org/ppeo/PPEO.owl#y_m
Description The local spatial coordinate y (in meters)

zni

Class(es)
http://purl.org/ppeo/PPEO.owl#spatial_coordinate
URI http://purl.org/ppeo/PPEO.owl#z
Description The local spatial coordinate z (numeric, discrete)

z_mni

Class(es)
http://purl.org/ppeo/PPEO.owl#spatial_coordinate
URI http://purl.org/ppeo/PPEO.owl#z_m
Description The local spatial coordinate z (in meters)

Namespaces

default (:)
http://purl.org/ppeo/PPEO.owl
dc
http://purl.org/dc/elements/1.1/
dct
http://purl.org/dc/terms/
owl
http://www.w3.org/2002/07/owl#
prov
http://www.w3.org/ns/prov#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
sdo
https://schema.org/
skos
http://www.w3.org/2004/02/skos/core#
xsd
http://www.w3.org/2001/XMLSchema#

Legend

cClasses
opObject Properties
fpFunctional Properties
dpData Properties
dpAnnotation Properties
pProperties
niNamed Individuals