Error: Unable to access jarfile /data/home/dstreitmatter/profilechecker-1.1.0.jar
@prefix sh: <http://www.w3.org/ns/shacl#> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . [] a sh:ValidationReport ; sh:conforms true .
The UniProt RDF schema ontology contains predicates used to describe UniProt entries and associated data.
UniProt RDF schema ontology
## All DBpedia Archivo ontologies from purl.uniprot.org domain Each artifact in this group deals as the archive for snapshots of one ontology of the [DBpedia Archivo](https://databus.dbpedia.org/ontologies) - A Web-Scale Interface for Ontology Archiving under Consumer-oriented Aspects. Find out more at [http://archivo.dbpedia.org](http://archivo.dbpedia.org). The description for the individual files in the artifact can be found [here](http://dev.dbpedia.org/DBpedia_Archvio#files).
## DBpedia Archivo Ontology Snapshot | Attribute | Value | | - | - | | Ontology URI | <http://purl.uniprot.org/core/> | Archivo Ontology Factsheet| [Link](http://archivo.dbpedia.org/info?o=http://purl.uniprot.org/core/) | Snapshot File URL | <https://www.uniprot.org/owl/core.rdf> | Snapshot OWL Version IRI | <None> | Snapshot Time | 2022-03-04 10:36:57 The [DBpedia Archivo Databus agent](https://databus.dbpedia.org/ontologies) generates only basic, static documentation for the archived snapshots of the ontologies. ## Ontology Metadata DBpedia Archivo extracts metadata from the ontology for well known properties (e.g. dct:description). This subsection shows the content of every property individually using a separate heading. ### dct:description The UniProt RDF schema ontology contains predicates used to describe UniProt entries and associated data. ### rdfs:comment Properties and classes used for protein annotation.
{ "http-data": { "accessed": "2022.03.04; 10:36:59", "best-header": "application/rdf+xml", "content-length": "", "e-tag": "", "lastModified": "Wed, 23 Feb 2022 00:00:00 GMT" }, "logs": { "nir-header": "{'Content-Type': 'text/html', 'Date': 'Fri, 04 Mar 2022 10:36:56 GMT', 'Location': 'https://www.uniprot.org/?query=purl:core/', 'Connection': 'Keep-Alive', 'Content-Length': '0'}",
<?xml version="1.0" encoding="utf-8"?> <rdf:RDF xmlns:dc11="http://purl.org/dc/terms/" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:owl2xml="http://www.w3.org/2006/12/owl2-xml#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:skos="http://www.w3.org/2004/02/skos/core#" xmlns:swrl="http://www.w3.org/2003/11/swrl#" xmlns:swrlb="http://www.w3.org/2003/11/swrlb#" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns="http://purl.uniprot.org/core/"> <rdf:Description rdf:about="http://purl.uniprot.org/core/"> <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Ontology"/> </rdf:Description> <rdf:Description rdf:about="http://purl.uniprot.org/core/"> <rdfs:label>UniProt RDF schema ontology</rdfs:label> </rdf:Description> <rdf:Description rdf:about="http://purl.uniprot.org/core/"> <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Properties and classes used for protein annotation.</rdfs:comment>
WARNING: An illegal reflective access operation has occurred WARNING: Illegal reflective access by com.google.inject.internal.cglib.core.$ReflectUtils$2 (file:/usr/lib/pellet/cli/target/pelletcli/lib/guice-4.0.jar) to method java.lang.ClassLoader.defineClass(java.lang.String,byte[],int,int,java.security.ProtectionDomain) WARNING: Please consider reporting this to the maintainers of com.google.inject.internal.cglib.core.$ReflectUtils$2 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations WARNING: All illegal access operations will be denied in a future release [main] WARN org.semanticweb.owlapi.util.SAXParsers - http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit not supported by parser type org.apache.xerces.jaxp.SAXParserImpl [main] WARN org.semanticweb.owlapi.util.SAXParsers - entityExpansionLimit not supported by parser type org.apache.xerces.jaxp.SAXParserImpl [main] WARN org.semanticweb.owlapi.util.SAXParsers - http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit not supported by parser type org.apache.xerces.jaxp.SAXParserImpl [main] WARN org.semanticweb.owlapi.util.SAXParsers - entityExpansionLimit not supported by parser type org.apache.xerces.jaxp.SAXParserImpl [main] WARN org.semanticweb.owlapi.util.SAXParsers - http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit not supported by parser type org.apache.xerces.jaxp.SAXParserImpl
There are 1 input files: /usr/local/archivo-data/purl.uniprot.org/core/2022.03.04-103657/core_type=parsed.ttl Start loading [main] WARN org.apache.jena.riot - [line: 2673, col: 18] Bad IRI: <ftp://ftp.uniprot.orftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/pan_proteomes/READMEg/pub/databases/uniprot/current_release/knowledgebase/pan_proteomes/README> Code: 12/PORT_SHOULD_NOT_BE_EMPTY in PORT: The colon introducing an empty port component should be omitted entirely, or a port number should be specified. Mar 04, 2022 10:37:10 AM org.mindswap.pellet.jena.graph.loader.DefaultGraphLoader addUnsupportedFeature WARNING: Unsupported axiom: Property http://www.w3.org/2000/01/rdf-schema#label is defined both as an AnnotationProperty and a ObjectProperty Mar 04, 2022 10:37:10 AM org.mindswap.pellet.jena.graph.loader.DefaultGraphLoader addUnsupportedFeature WARNING: Unsupported axiom: Ignoring triple with unknown property from RDFS namespace: http://purl.uniprot.org/core/cofactorLabel @rdfs:label "cofactorLabel"^^http://www.w3.org/2001/XMLSchema#string Mar 04, 2022 10:37:10 AM org.mindswap.pellet.jena.graph.loader.DefaultGraphLoader addUnsupportedFeature WARNING: Unsupported axiom: Ignoring triple with unknown property from RDFS namespace: http://purl.uniprot.org/core/Modified_Sequence @rdfs:label "Modified Sequence"^^http://www.w3.org/2001/XMLSchema#string
<http://purl.uniprot.org/core/Excluded_Proteome> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Class> . <http://purl.uniprot.org/core/Excluded_Proteome> <http://www.w3.org/2000/01/rdf-schema#comment> "A Proteome that has been excluded from UniProtKB for some reason, normally described by statements with the predicate up:exclusionReason"^^<http://www.w3.org/2001/XMLSchema#string> . <http://purl.uniprot.org/core/Excluded_Proteome> <http://www.w3.org/2000/01/rdf-schema#isDefinedBy> <http://purl.uniprot.org/core/> . <http://purl.uniprot.org/core/Excluded_Proteome> <http://www.w3.org/2000/01/rdf-schema#label> "Excluded proteome"^^<http://www.w3.org/2001/XMLSchema#string> . <http://purl.uniprot.org/core/Excluded_Proteome> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://www.uniprot.org/help/proteome> .
Metadata created by the DBpedia Databus Maven Plugin: https://github.com/dbpedia/databus-maven-plugin (Version 1.3-SNAPSHOT) The DataID ontology is a metadata omnibus, which can be extended to be interoperable with all metadata formats Note that the metadata (the dataid.ttl file) is always CC-0, the files are licensed individually Metadata created by https://yum-yab.github.io/webid.ttl#onto
DataID metadata for purl.uniprot.org/core
@prefix dc: <http://purl.org/dc/elements/1.1/> . @prefix owl: <http://www.w3.org/2002/07/owl#> . @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . @prefix sh: <http://www.w3.org/ns/shacl#> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . [] a sh:ValidationReport ; sh:conforms false ; sh:result [ a sh:ValidationResult ;
<?xml version="1.0" encoding="UTF-8"?> UniProt RDF schema ontology UniProt RDF schema ontology UniProt RDF schema ontology $(document).ready( function () { jQuery(".markdown").each(function(el){ jQuery(this).after(marked(jQuery(this).text())).remove()}); var list = $('a[name=" https://www.uniprot.org/owl/core.rdf "]'); if (list.size() != 0) {
<?xml version="1.0"?> <rdf:RDF xmlns="http://purl.uniprot.org/core/" xml:base="http://purl.uniprot.org/core/" xmlns:core="http://purl.uniprot.org/core/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:owl2xml="http://www.w3.org/2006/12/owl2-xml#" xmlns:swrlb="http://www.w3.org/2003/11/swrlb#" xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#" xmlns:swrl="http://www.w3.org/2003/11/swrl#"
<http://biohackathon.org/resource/faldo#location> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#ObjectProperty> . <http://biohackathon.org/resource/faldo#reference> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#ObjectProperty> . <http://purl.uniprot.org/core/> <http://purl.org/dc/terms/description> "The UniProt RDF schema ontology contains predicates used to describe UniProt entries and associated data."^^<http://www.w3.org/2001/XMLSchema#string> . <http://purl.uniprot.org/core/> <http://purl.org/dc/terms/license> <http://creativecommons.org/licenses/by/4.0/> . <http://purl.uniprot.org/core/> <http://purl.org/dc/terms/title> "UniProt RDF schema ontology"^^<http://www.w3.org/2001/XMLSchema#string> . <http://purl.uniprot.org/core/> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Ontology> . <http://purl.uniprot.org/core/> <http://www.w3.org/2000/01/rdf-schema#comment> "Properties and classes used for protein annotation."^^<http://www.w3.org/2001/XMLSchema#string> . <http://purl.uniprot.org/core/> <http://www.w3.org/2000/01/rdf-schema#label> "UniProt RDF schema ontology" . <http://purl.uniprot.org/core/> <http://www.w3.org/2002/07/owl#imports> <http://biohackathon.org/resource/faldo> . <http://purl.uniprot.org/core/> <http://www.w3.org/2002/07/owl#imports> <http://www.w3.org/1999/02/22-rdf-syntax-ns> .
<http://purl.uniprot.org/core/> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Ontology> . <http://purl.uniprot.org/core/> <http://www.w3.org/2000/01/rdf-schema#label> "UniProt RDF schema ontology" . <http://purl.uniprot.org/core/> <http://www.w3.org/2000/01/rdf-schema#comment> "Properties and classes used for protein annotation."^^<http://www.w3.org/2001/XMLSchema#string> . <http://purl.uniprot.org/core/> <http://www.w3.org/2002/07/owl#imports> <http://www.w3.org/2004/02/skos/core> . <http://purl.uniprot.org/core/> <http://www.w3.org/2002/07/owl#imports> <http://xmlns.com/foaf/0.1/> . <http://purl.uniprot.org/core/> <http://www.w3.org/2002/07/owl#imports> <http://biohackathon.org/resource/faldo> . <http://purl.uniprot.org/core/> <http://www.w3.org/2002/07/owl#imports> <http://www.w3.org/1999/02/22-rdf-syntax-ns> . <http://purl.uniprot.org/core/> <http://www.w3.org/2002/07/owl#imports> <http://www.w3.org/2000/01/rdf-schema> . <http://purl.uniprot.org/core/> <http://purl.org/dc/terms/description> "The UniProt RDF schema ontology contains predicates used to describe UniProt entries and associated data."^^<http://www.w3.org/2001/XMLSchema#string> . <http://purl.uniprot.org/core/> <http://purl.org/dc/terms/title> "UniProt RDF schema ontology"^^<http://www.w3.org/2001/XMLSchema#string> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . @prefix : <http://purl.uniprot.org/core/> . @prefix owl: <http://www.w3.org/2002/07/owl#> . @prefix owl2xml: <http://www.w3.org/2006/12/owl2-xml#> . @prefix swrlb: <http://www.w3.org/2003/11/swrlb#> . @prefix protege: <http://protege.stanford.edu/plugins/owl/protege#> . @prefix swrl: <http://www.w3.org/2003/11/swrl#> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . @prefix skos: <http://www.w3.org/2004/02/skos/core#> . @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
There are 1 input files: /usr/local/archivo-data/purl.uniprot.org/core/2022.03.04-103657/core_type=parsed.ttl Start loading [main] WARN org.apache.jena.riot - [line: 2673, col: 18] Bad IRI: <ftp://ftp.uniprot.orftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/pan_proteomes/READMEg/pub/databases/uniprot/current_release/knowledgebase/pan_proteomes/README> Code: 12/PORT_SHOULD_NOT_BE_EMPTY in PORT: The colon introducing an empty port component should be omitted entirely, or a port number should be specified. Mar 04, 2022 10:37:12 AM org.mindswap.pellet.jena.graph.loader.DefaultGraphLoader addUnsupportedFeature WARNING: Unsupported axiom: Property http://www.w3.org/2000/01/rdf-schema#label is defined both as an AnnotationProperty and a ObjectProperty Mar 04, 2022 10:37:12 AM org.mindswap.pellet.jena.graph.loader.DefaultGraphLoader addUnsupportedFeature WARNING: Unsupported axiom: Ignoring triple with unknown property from RDFS namespace: http://purl.uniprot.org/core/Modified_Sequence @rdfs:label "Modified Sequence"^^http://www.w3.org/2001/XMLSchema#string Mar 04, 2022 10:37:12 AM org.mindswap.pellet.jena.graph.loader.DefaultGraphLoader addUnsupportedFeature WARNING: Unsupported axiom: Ignoring triple with unknown property from RDFS namespace: http://purl.uniprot.org/core/modification @rdfs:label "modification"^^http://www.w3.org/2001/XMLSchema#string