There are 1 input files: /usr/local/archivo-data/purl.uniprot.org/core/2025.02.06-130523/core_type=parsed.ttl Start loading Finished loading in 00:00:00.061 Input size: Classes = 2, Properties = 19, Individuals = 3 Expressivity: ALH(D) Start consistency check Finished consistency check in 00:00:00.019 Timer summary:
@prefix sh: <http://www.w3.org/ns/shacl#> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . [] a sh:ValidationReport ; sh:conforms true .
Metadata created by the DBpedia Databus Maven Plugin: https://github.com/dbpedia/databus-maven-plugin (Version 1.3-SNAPSHOT) The DataID ontology is a metadata omnibus, which can be extended to be interoperable with all metadata formats Note that the metadata (the dataid.ttl file) is always CC-0, the files are licensed individually Metadata created by https://yum-yab.github.io/webid.ttl#onto
DataID metadata for purl.uniprot.org/core
<http://purl.uniprot.org/core/Member_Of_Redudant_Proteome> <http://www.w3.org/2000/01/rdf-schema#isDefinedBy> <http://purl.uniprot.org/core/> . <http://purl.uniprot.org/core/Protein> <http://www.w3.org/2000/01/rdf-schema#isDefinedBy> <http://purl.uniprot.org/core/> . <http://purl.uniprot.org/core/created> <http://www.w3.org/2000/01/rdf-schema#isDefinedBy> <http://purl.uniprot.org/core/> . <http://purl.uniprot.org/core/mnemonic> <http://www.w3.org/2000/01/rdf-schema#isDefinedBy> <http://purl.uniprot.org/core/> . <http://purl.uniprot.org/core/modified> <http://www.w3.org/2000/01/rdf-schema#isDefinedBy> <http://purl.uniprot.org/core/> . <http://purl.uniprot.org/core/obsolete> <http://www.w3.org/2000/01/rdf-schema#isDefinedBy> <http://purl.uniprot.org/core/> .
WARNING: An illegal reflective access operation has occurred WARNING: Illegal reflective access by com.google.inject.internal.cglib.core.$ReflectUtils$2 (file:/usr/lib/pellet/cli/target/pelletcli/lib/guice-4.0.jar) to method java.lang.ClassLoader.defineClass(java.lang.String,byte[],int,int,java.security.ProtectionDomain) WARNING: Please consider reporting this to the maintainers of com.google.inject.internal.cglib.core.$ReflectUtils$2 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations WARNING: All illegal access operations will be denied in a future release [main] WARN org.semanticweb.owlapi.util.SAXParsers - http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit not supported by parser type org.apache.xerces.jaxp.SAXParserImpl [main] WARN org.semanticweb.owlapi.util.SAXParsers - entityExpansionLimit not supported by parser type org.apache.xerces.jaxp.SAXParserImpl [main] WARN org.semanticweb.owlapi.util.SAXParsers - http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit not supported by parser type org.apache.xerces.jaxp.SAXParserImpl [main] WARN org.semanticweb.owlapi.util.SAXParsers - entityExpansionLimit not supported by parser type org.apache.xerces.jaxp.SAXParserImpl [main] WARN org.semanticweb.owlapi.util.SAXParsers - http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit not supported by parser type org.apache.xerces.jaxp.SAXParserImpl
<http://purl.uniprot.org/core/Citation> <http://www.w3.org/2000/01/rdf-schema#isDefinedBy> <http://purl.uniprot.org/core/> . <http://purl.uniprot.org/core/Database> <http://www.w3.org/2000/01/rdf-schema#isDefinedBy> <http://purl.uniprot.org/core/> . <http://purl.uniprot.org/core/Infraorder> <http://www.w3.org/2000/01/rdf-schema#isDefinedBy> <http://purl.uniprot.org/core/> . <http://purl.uniprot.org/core/Parvorder> <http://www.w3.org/2000/01/rdf-schema#isDefinedBy> <http://purl.uniprot.org/core/> . <http://purl.uniprot.org/core/category> <http://www.w3.org/2000/01/rdf-schema#isDefinedBy> <http://purl.uniprot.org/core/> . <http://purl.uniprot.org/core/citation> <http://www.w3.org/2000/01/rdf-schema#isDefinedBy> <http://purl.uniprot.org/core/> .
<http://purl.uniprot.org/core/> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Ontology> . <http://purl.uniprot.org/core/> <http://www.w3.org/2002/07/owl#imports> <http://biohackathon.org/resource/faldo> . <http://purl.uniprot.org/core/> <http://www.w3.org/2002/07/owl#imports> <http://www.w3.org/2004/02/skos/core> . <http://purl.uniprot.org/core/> <http://www.w3.org/2002/07/owl#imports> <http://xmlns.com/foaf/0.1/> . <http://purl.uniprot.org/core/> <http://www.w3.org/2002/07/owl#imports> <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . <http://purl.uniprot.org/core/> <http://www.w3.org/2002/07/owl#imports> <http://www.w3.org/2000/01/rdf-schema#> . <http://purl.uniprot.org/core/> <http://www.w3.org/2000/01/rdf-schema#comment> "Properties and classes used for protein annotation." . <http://purl.uniprot.org/core/> <http://www.w3.org/2000/01/rdf-schema#label> "UniProt RDF schema ontology" . <http://purl.uniprot.org/core/> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <https://sparql.uniprot.org/sparql> . <http://purl.uniprot.org/core/> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://www.github.com/sib-swiss/sparql-training/tree/master/uniprot> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . @prefix : <http://www.w3.org/2002/07/owl#> . <http://purl.uniprot.org/core/> <http://purl.org/dc/terms/abstract> "The UniProt RDF schema ontology is used to describe concepts that are central to the UniProt datasets. Especially those for which there is on consensus concept available in the wider Bioinformatics community." ; <http://purl.org/dc/terms/description> "The UniProt RDF schema ontology contains predicates used to describe UniProt entries and associated data." ; <http://purl.org/dc/terms/license> <http://creativecommons.org/licenses/by/4.0/> ; <http://purl.org/dc/terms/title> "UniProt RDF schema ontology" ; <http://purl.org/ontology/bibo/status> <http://purl.org/ontology/bibo/status/published> ; <http://purl.org/vocab/vann/preferredNamespacePrefix> "up" ;
The UniProt RDF schema ontology is used to describe concepts that are central to the UniProt datasets.
UniProt RDF schema ontology
## All DBpedia Archivo ontologies from purl.uniprot.org domain Each artifact in this group deals as the archive for snapshots of one ontology of the [DBpedia Archivo](https://databus.dbpedia.org/ontologies) - A Web-Scale Interface for Ontology Archiving under Consumer-oriented Aspects. Find out more at [http://archivo.dbpedia.org](http://archivo.dbpedia.org). The description for the individual files in the artifact can be found [here](http://dev.dbpedia.org/DBpedia_Archvio#files).
## DBpedia Archivo Ontology Snapshot | Attribute | Value | | - | - | | Ontology URI | <http://purl.uniprot.org/core/> | Archivo Ontology Factsheet| [Link](http://archivo.dbpedia.org/info?o=http://purl.uniprot.org/core/) | Snapshot File URL | <https://sparql.uniprot.org/sparql/?query=PREFIX%20up:%3chttp://purl.uniprot.org/core/%3e%20DESCRIBE%20up:%20FROM%20up:> | Snapshot OWL Version IRI | <None> | Snapshot Time | 2025-02-06 13:05:23 The [DBpedia Archivo Databus agent](https://databus.dbpedia.org/ontologies) generates only basic, static documentation for the archived snapshots of the ontologies. ## Ontology Metadata DBpedia Archivo extracts metadata from the ontology for well known properties (e.g. dct:description). This subsection shows the content of every property individually using a separate heading. ### dct:description The UniProt RDF schema ontology contains predicates used to describe UniProt entries and associated data. ### rdfs:comment Properties and classes used for protein annotation. ### dct:abstract The UniProt RDF schema ontology is used to describe concepts that are central to the UniProt datasets. Especially those for which there is on consensus concept available in the wider Bioinformatics community.
<http://purl.uniprot.org/core/> <http://purl.org/dc/terms/abstract> "The UniProt RDF schema ontology is used to describe concepts that are central to the UniProt datasets. Especially those for which there is on consensus concept available in the wider Bioinformatics community." . <http://purl.uniprot.org/core/> <http://purl.org/dc/terms/description> "The UniProt RDF schema ontology contains predicates used to describe UniProt entries and associated data." . <http://purl.uniprot.org/core/> <http://purl.org/dc/terms/license> <http://creativecommons.org/licenses/by/4.0/> . <http://purl.uniprot.org/core/> <http://purl.org/dc/terms/title> "UniProt RDF schema ontology" . <http://purl.uniprot.org/core/> <http://purl.org/ontology/bibo/status> <http://purl.org/ontology/bibo/status/published> . <http://purl.uniprot.org/core/> <http://purl.org/vocab/vann/preferredNamespacePrefix> "up" . <http://purl.uniprot.org/core/> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Ontology> . <http://purl.uniprot.org/core/> <http://www.w3.org/2000/01/rdf-schema#comment> "Properties and classes used for protein annotation." . <http://purl.uniprot.org/core/> <http://www.w3.org/2000/01/rdf-schema#label> "UniProt RDF schema ontology" . <http://purl.uniprot.org/core/> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://www.github.com/sib-swiss/sparql-training/tree/master/uniprot> .
LODE error LODE error Reason: Server returned HTTP response code: 500 for URL: https://sparql.uniprot.org/sparql/
<?xml version="1.0" encoding="UTF-8"?> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="http://purl.uniprot.org/core/"> <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Ontology"/> <imports xmlns="http://www.w3.org/2002/07/owl#" rdf:resource="http://biohackathon.org/resource/faldo"/> <imports xmlns="http://www.w3.org/2002/07/owl#" rdf:resource="http://www.w3.org/2004/02/skos/core"/> <imports xmlns="http://www.w3.org/2002/07/owl#" rdf:resource="http://xmlns.com/foaf/0.1/"/> <imports xmlns="http://www.w3.org/2002/07/owl#" rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#"/>
@prefix dc: <http://purl.org/dc/elements/1.1/> . @prefix owl: <http://www.w3.org/2002/07/owl#> . @prefix sh: <http://www.w3.org/ns/shacl#> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . [] a sh:ValidationReport ; sh:conforms false ; sh:result [ a sh:ValidationResult ; sh:focusNode <http://purl.uniprot.org/core/> ; sh:resultMessage "no owl:backwardsCompatibleWith of the ontology given, will not be displayed"@en ;
{ "http-data": { "accessed": "2025.02.06; 13:05:25", "best-header": "application/rdf+xml", "content-length": "3833", "e-tag": "W/\"2025_01\"", "lastModified": "" }, "logs": { "nir-header": "{'Date': 'Thu, 06 Feb 2025 13:05:23 GMT', 'Server': 'Apache', 'Access-Control-Allow-Origin': '*', 'Location': 'https://purl.uniprot.org/core/', 'Content-Length': '238', 'Keep-Alive': 'timeout=5, max=100', 'Connection': 'Keep-Alive', 'Content-Type': 'text/html; charset=iso-8859-1'}",
<?xml version="1.0" encoding="utf-8"?> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> <rdf:Description rdf:about="http://purl.uniprot.org/core/"> <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Ontology"/> </rdf:Description> <rdf:Description rdf:about="http://purl.uniprot.org/core/"> <ns0:imports xmlns:ns0="http://www.w3.org/2002/07/owl#" rdf:resource="http://biohackathon.org/resource/faldo"/> </rdf:Description> <rdf:Description rdf:about="http://purl.uniprot.org/core/"> <ns0:imports xmlns:ns0="http://www.w3.org/2002/07/owl#" rdf:resource="http://www.w3.org/2004/02/skos/core"/>
WARNING: An illegal reflective access operation has occurred WARNING: Illegal reflective access by com.google.inject.internal.cglib.core.$ReflectUtils$1 (file:/usr/local/src/webapp/archivo/archivo/helpingBinaries/profilechecker-1.1.0.jar) to method java.lang.ClassLoader.defineClass(java.lang.String,byte[],int,int,java.security.ProtectionDomain) WARNING: Please consider reporting this to the maintainers of com.google.inject.internal.cglib.core.$ReflectUtils$1 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations WARNING: All illegal access operations will be denied in a future release [main] INFO org.semanticweb.owlapi.rdf.rdfxml.parser.AbstractState - Notice: root element does not have an xml:base. Relative IRIs will be resolved against http://biohackathon.org/resource/faldo [main] INFO org.semanticweb.owlapi.rdf.rdfxml.parser.AbstractState - Notice: root element does not have an xml:base. Relative IRIs will be resolved against http://www.w3.org/1999/02/22-rdf-syntax-ns# [main] INFO org.semanticweb.owlapi.rdf.rdfxml.parser.TripleHandlers - Usage of rdf vocabulary: http://www.w3.org/1999/02/22-rdf-syntax-ns#value -> http://www.w3.org/1999/02/22-rdf-syntax-ns#type -> http://www.w3.org/1999/02/22-rdf-syntax-ns#Property [main] INFO org.semanticweb.owlapi.rdf.rdfxml.parser.TripleHandlers - Usage of rdf vocabulary: http://www.w3.org/1999/02/22-rdf-syntax-ns#object -> http://www.w3.org/1999/02/22-rdf-syntax-ns#type -> http://www.w3.org/1999/02/22-rdf-syntax-ns#Property [main] INFO org.semanticweb.owlapi.rdf.rdfxml.parser.TripleHandlers - Usage of rdf vocabulary: http://www.w3.org/1999/02/22-rdf-syntax-ns#type -> http://www.w3.org/1999/02/22-rdf-syntax-ns#type -> http://www.w3.org/1999/02/22-rdf-syntax-ns#Property