WikiPathways GPML Vocabulary

IRI:
http://vocabularies.wikipathways.org/gpml#
Version IRI:
http://www.w3.org/2012/pyRdfa/extract?uri=http://vocabularies.wikipathways.org/gpml#
Other visualisation:
Ontology source

Table of Content

  1. Classes
  2. Object Properties
  3. Data Properties
  4. Named Individuals
  5. Annotation Properties
  6. Namespace Declarations

Classes

Anchorc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/gpml#Anchor

A connection point on a graphical line or an interaction, where another graphical line or interaction can be connected.
is in range of
graphIdop, hasAnchorop, positionop, shapeop

Attributec back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/gpml#Attribute

Element used to specify key/value paired information for a given object.
is in range of
hasAttributeop, keyop, valueop

Biopaxc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/gpml#Biopax

Element used to embed Biopax (namespace: http://www.biopax.org/release/biopax-level3.owl) content in a GPML document.
is in range of
hasBiopaxop

Commentc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/gpml#Comment

Elements used to provide descriptions and arbitrary notes for a given object.
is in range of
hasCommentop

DataNodec back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/gpml#DataNode

Denotes a biological entity that forms a node in a pathway and has some biological meaning associated with it. For a list of the gpml:DataNode types supported at WikiPathways, see subclasses of wp:DataNode or the wpTypes vocabulary defined for use in applications..
is in range of
alignop, biopaxRefop, centerXop, centerYop, colorop, fillColorop, fontStrikethruop, fontStyleop, fontWeightop, graphIdop, groupRefop, hasAttributeop, hasCommentop, hasDataNodeop, hasPublicationXrefop, hasXrefop, heightop, lineStyleop, lineThicknessop, shapeTypeop, textlabelop, typeop, valignop, widthop, zorderop

GraphicalLinec back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/gpml#GraphicalLine

A visual annotation, often used to partition space or connect other annotation, e.g., Shapes. An Xref can not be specified for GraphicalLines (in contrast to Interactions).
is in range of
biopaxRefop, colorop, connectorTypeop, graphIdop, groupRefop, hasAnchorop, hasAttributeop, hasCommentop, hasGraphicalLineop, hasPointop, hasPublicationXrefop, lineStyleop, lineThicknessop, typeop, zorderop

Groupc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/gpml#Group

A collection of structurally or functionally similar or related pathway elements.
is in range of
biopaxRefop, graphIdop, groupIdop, groupRefop, hasAttributeop, hasCommentop, hasGroupop, hasPublicationXrefop, styleop, textlabelop

InfoBoxc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/gpml#InfoBox

Currently just a placeholder -- not used.
is in range of
centerXop, centerYop, hasInfoBoxop

Interactionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/gpml#Interaction

Defines the biochemical relationship between DataNodes or with Anchors on other Interactions. An Xref can be specified for Interactions (in contrast to GraphicalLines).
is in range of
biopaxRefop, colorop, connectorTypeop, graphIdop, groupRefop, hasAnchorop, hasAttributeop, hasCommentop, hasInteractionop, hasPointop, hasPublicationXrefop, hasXrefop, lineStyleop, lineThicknessop, typeop, zorderop

labelc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/gpml#Label

A text field which can be used to annotate any aspect of a pathway.
is in range of
alignop, biopaxRefop, centerXop, centerYop, colorop, fillColorop, fontDecorationop, fontNameop, fontSizeop, fontStrikethruop, fontStyleop, fontWeightop, graphIdop, groupRefop, hasAttributeop, hasCommentop, hasLabelop, hasPublicationXrefop, heightop, hrefop, lineStyleop, lineThicknessop, shapeTypeop, textlabelop, valignop, widthop, zorderop

Legendc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/gpml#Legend

An explanatory list of the colors used for visualizing data on the pathway. Not currently used.
is in range of
centerXop, centerYop, hasLegendop

Pathwayc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/gpml#Pathway

A graph diagram representing a biological process as a set of interactions and relationships among genes, proteins, metabolites, and other factors in the context of cellular compartments, tissues and organisms.
is in range of
authorop, biopaxRefop, boardHeightop, boardWidthop, data-Sourceop, emailop, hasAttributeop, hasBiopaxop, hasCommentop, hasDataNodeop, hasGraphicalLineop, hasGroupop, hasInfoBoxop, hasInteractionop, hasLabelop, hasLegendop, hasPublicationXrefop, hasShapeop, hasStateop, last-Modifiedop, licenseop, maintainerop, nameop, organismop, versionop

Pointc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/gpml#Point

A location in 2-dimensional space defined by x and y coordinates.
is in range of
arrowHeadop, graphIdop, graphRefop, hasPointop, relXop, relYop, xop, yop

PublicationXrefc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/gpml#PublicationXref

Defines a literature reference. Refers to a BioPAX definition.
is in range of
hasPublicationXrefop, idop

RequiresCurationAttentionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/gpml#RequiresCurationAttention

Deprecated: Not in use.

Shapec back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/gpml#Shape

Shape can refer to two different things in GPML, both of which are associated with graphical elements.
is in range of
alignop, biopaxRefop, centerXop, centerYop, colorop, fillColorop, fontDecorationop, fontNameop, fontSizeop, fontStrikethruop, fontStyleop, fontWeightop, graphIdop, groupRefop, hasAttributeop, hasCommentop, hasPublicationXrefop, hasShapeop, heightop, lineStyleop, lineThicknessop, rotationop, shapeTypeop, textlabelop, valignop, widthop, zorderop

Statec back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/gpml#State

A particular condition, mode or modification of an entity, e.g., phosphorylated, activated, mutated, SNP, etc.
is in range of
biopaxRefop, colorop, fillColorop, graphIdop, graphRefop, hasAttributeop, hasCommentop, hasPublicationXrefop, hasStateop, hasXrefop, heightop, lineStyleop, lineThicknessop, relXop, relYop, shapeTypeop, stateTypeop, textlabelop, widthop, zorderop

Xrefc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/gpml#Xref

Reference to a database entry that matches the node in the pathway. It is a combination of an identifier of the entity and an identifier of the database in which the entity is found.
is in range of
databaseop, hasXrefop, idop

Object Properties

alignop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#align

Horizontal alignment of displayed text, e.g., Left, Center, Right.
has range
DataNodec
labelc
Shapec
is also defined as
data property

arrowHeadop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#arrowHead

Specifies the glyph at the ends of lines and interactions.
has range
Pointc
is also defined as
data property

authorop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#author

The person who created or edited the pathway in question.
has range
Pathwayc
is also defined as
data property

biopaxRefop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#biopaxRef

Reuse of references defined by BioPAX.
has range
DataNodec
GraphicalLinec
Groupc
Interactionc
labelc
Pathwayc
Shapec
Statec
is also defined as
data property

boardHeightop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#boardHeight

Range minimum is zero.
has range
Pathwayc
is also defined as
data property

boardWidthop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#boardWidth

Range minimum is zero.
has range
Pathwayc
is also defined as
data property

centerXop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#centerX

Middle of a pathway element in the x-direction.
has range
DataNodec
InfoBoxc
labelc
Legendc
Shapec
is also defined as
data property

centerYop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#centerY

Middle of a pathway element in the y-direction.
has range
DataNodec
InfoBoxc
labelc
Legendc
Shapec
is also defined as
data property

colorop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#color

The color to be used for visualization.
has range
DataNodec
GraphicalLinec
Interactionc
labelc
Shapec
Statec
is also defined as
data property

connectorTypeop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#connectorType

Specifies a set of rules to govern layout of Graphical Lines and Interactions. PathVisio (Java): Line Type and GPML: ConnectorType
has range
GraphicalLinec
Interactionc
is also defined as
data property

data-Sourceop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#data-Source

Deprecated: Not in use.
has range
Pathwayc
is also defined as
data property

databaseop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#database

Specifies the datasource for the identifier provided as an Xref. Equivalent to http://vocabularies.bridgedb.org/ops#DataSource conventional name .
has range
Xrefc
is also defined as
data property

emailop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#email

Deprecated: An electronic mail address. Used to reference the author or maintainer of a pathway prior to WikiPathways.
has range
Pathwayc
is also defined as
data property

fillColorop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#fillColor

The hexidecimal color value used to paint the area of an object, not including its border.
has range
DataNodec
labelc
Shapec
Statec
is also defined as
data property

fontDecorationop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#fontDecoration

Deprecated: Not in use.
has range
labelc
Shapec
is also defined as
data property

fontNameop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#fontName

The name of the set of printable text characters to be used for visualization.
has range
labelc
Shapec
is also defined as
data property

fontSizeop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#fontSize

The point value for the size of the font.
has range
labelc
Shapec
is also defined as
data property

fontStrikethruop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#fontStrikethru

Deprecated: Not in use.
has range
DataNodec
labelc
Shapec
is also defined as
data property

fontStyleop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#fontStyle

The typographic style or font face applied to displayed text, e.g., Arial.
has range
DataNodec
labelc
Shapec
is also defined as
data property

fontWeightop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#fontWeight

Thickness of the font used, e.g a bold font would have more weight. Used for DataNodes, Labels and Shapes.
has range
DataNodec
labelc
Shapec
is also defined as
data property

graphIdop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#graphId

A GraphId is a unique (per Pathway) identifier for a pathway element, such as DataNode, Interaction, GraphicalLine, Label, Point, Group, Shape, State and Anchor.
has range
Anchorc
DataNodec
GraphicalLinec
Groupc
Interactionc
labelc
Pointc
Shapec
Statec
is also defined as
data property

graphRefop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#graphRef

A GraphRef indicates a "depends on" or child/parent relationship between two Pathway elements. The element with the GraphRef is the child, and the element referred to by the GraphRef is the parent. The parent's GraphId will be specified by the child's GraphRef.
has range
Pointc
Statec
is also defined as
data property

groupIdop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#groupId

Uniquely identifies a gpml:Group in a gpml:Pathway.
has range
Groupc
is also defined as
data property

groupRefop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#groupRef

A GroupRef indicates that its element is part of the gpml:Group with the specified GroupId. DataNode, GraphicalLine, Group, Interaction, Label and Shape can be part of a group.
has range
DataNodec
GraphicalLinec
Groupc
Interactionc
labelc
Shapec
is also defined as
data property

hasAnchorop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#hasAnchor

Boolean property for the existence of an Anchor on a given line or interaction.
has range
Anchorc
GraphicalLinec
Interactionc

hasAttributeop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#hasAttribute

Boolean property for the existence of an Attribute class associated with a given object.
has range
Attributec
DataNodec
GraphicalLinec
Groupc
Interactionc
labelc
Pathwayc
Shapec
Statec

hasBiopaxop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#hasBiopax

Boolean property for the existence of a BioPax class associated with a given pathway.
has range
Biopaxc
Pathwayc

hasCommentop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#hasComment

Boolean property for the existence of a Comment class associated with a given object.
has range
Commentc
DataNodec
GraphicalLinec
Groupc
Interactionc
labelc
Pathwayc
Shapec
Statec

hasDataNodeop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#hasDataNode

Boolean property for the existence of a DataNode in a given pathway.
has range
DataNodec
Pathwayc

hasGraphicalLineop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#hasGraphicalLine

Boolean property for the existence of a GraphicalLine in a given pathway.
has range
GraphicalLinec
Pathwayc

hasGroupop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#hasGroup

Boolean property for the existence of a Group in a given pathway.
has range
Groupc
Pathwayc

hasInfoBoxop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#hasInfoBox

Boolean property for the existence of an InfroBox in a given pathway.
has range
InfoBoxc
Pathwayc

hasInteractionop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#hasInteraction

Boolean property for the existence of an Interaction in a given pathway.
has range
Interactionc
Pathwayc

hasLabelop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#hasLabel

Boolean property for the existence of a Label in a given pathway.
has range
labelc
Pathwayc

hasLegendop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#hasLegend

Boolean property for the existence of a Legend in a given pathway.
has range
Legendc
Pathwayc

hasPointop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#hasPoint

Boolean property for the existence of a Point in a given line or interaction.
has range
GraphicalLinec
Interactionc
Pointc

hasPublicationXrefop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#hasPublicationXref

Boolean property for the existence of a PublicationXref associated with a given object.
has range
DataNodec
GraphicalLinec
Groupc
Interactionc
labelc
Pathwayc
PublicationXrefc
Shapec
Statec

hasShapeop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#hasShape

Boolean property for the existence of a Shape in a given pathway.
has range
Pathwayc
Shapec

hasStateop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#hasState

Boolean property for the existence of a State in a given pathway.
has range
Pathwayc
Statec

hasXrefop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#hasXref

Boolean property for the existence of an Xref associated with a given object.
has range
DataNodec
Interactionc
Statec
Xrefc

heightop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#height

The pixel value for the y-dimensional length of a given object.
has range
DataNodec
labelc
Shapec
Statec
is also defined as
data property

hrefop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#href

The hyperlink optionally specified in a Label.
has range
labelc
is also defined as
data property

idop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#id

The identifier of a PublicationXref or Xref object.
has range
PublicationXrefc
Xrefc
is also defined as
data property

keyop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#key

Key of the key/value pair in the Attribute class.
has range
Attributec
is also defined as
data property

last-Modifiedop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#last-Modified

The date of the last modification of the pathway.
has range
Pathwayc
is also defined as
data property

licenseop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#license

The license of a pathway.
has range
Pathwayc
is also defined as
data property

lineStyleop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#lineStyle

The visual appearance of a line or border, e.g., Solid or Broken.
has range
DataNodec
GraphicalLinec
Interactionc
labelc
Shapec
Statec
is also defined as
data property

lineThicknessop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#lineThickness

The pixel value for the width of a given line, interaction or border.
has range
DataNodec
GraphicalLinec
Interactionc
labelc
Shapec
Statec
is also defined as
data property

maintainerop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#maintainer

The maintainer of the pathway. Currently not used in WP.
has range
Pathwayc
is also defined as
data property

nameop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#name

The name of a pathway.
has range
Pathwayc
is also defined as
data property

organismop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#organism

The scientific name (e.g., Homo sapiens) of the species being described by the pathway.
has range
Pathwayc
is also defined as
data property

positionop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#position

Proportional distance of an anchor along the line it belongs to, between 0 and 1.
has range
Anchorc
is also defined as
data property

relXop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#relX

RelX is the x-coordinate used when a point or state is linked to a another object - relative coordinate to the object that it is linked to (0,0 - center, 1,1 - bottom-right).
has range
Pointc
Statec
is also defined as
data property

relYop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#relY

RelY is the y-coordinate used when a point or state is linked to a another object - relative coordinate to the object that it is linked to (0,0 - center, 1,1 - bottom-right).
has range
Pointc
Statec
is also defined as
data property

rotationop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#rotation

The degree value of angular offset relative to the center of a given object.
has range
Shapec
is also defined as
data property

shapeop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#shape

The visual representation of an anchor, e.g., Circle or None.
has range
Anchorc
is also defined as
data property

shapeTypeop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#shapeType

Currently: Specifies the glyph (graphical representation) to use for GPML elements (DataNode, Label, Shape, State). Proposed: Expand it to also describe Anchors. It should replace the term currently used to specify the graphical representation of an Anchor. The current term is "Shape," which conflicts with the GPML element named "Shape." See details for term "Shape."
has range
DataNodec
labelc
Shapec
Statec
is also defined as
data property

stateTypeop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#stateType

A free text field to describe the nature or category of a given state.
has range
Statec
is also defined as
data property

styleop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#style

The type of Group, e.g., Complex.
has range
Groupc
is also defined as
data property

textlabelop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#textlabel

TextLabel of an object (DataNode, Group, Label, Shape, State).
has range
DataNodec
Groupc
labelc
Shapec
Statec
is also defined as
data property

typeop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#type

Specifies the type of an object (DataNode, GraphicalLine, Interaction).
has range
DataNodec
GraphicalLinec
Interactionc
is also defined as
data property

valignop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#valign

Vertical alignment of displayed text, e.g., Top, Middle, Bottom.
has range
DataNodec
labelc
Shapec
is also defined as
data property

valueop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#value

Value of the key/value pair in the Attribute class.
has range
Attributec
is also defined as
data property

versionop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#version

The version of a Pathway (currently not used in WP).
has range
Pathwayc
is also defined as
data property

widthop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#width

The pixel value for the x-dimensional length of a given object.
has range
DataNodec
labelc
Shapec
Statec
is also defined as
data property

xop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#x

The x-coordinate of a point in the 2-dimensional plane in which a pathway is drawn.
has range
Pointc
is also defined as
data property

yop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#y

The y-coordinate of a point in the 2-dimensional plane in which a pathway is drawn.
has range
Pointc
is also defined as
data property

zorderop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#zorder

Indicates the zorder of the object in the pathway.
has range
DataNodec
GraphicalLinec
Interactionc
labelc
Shapec
Statec
is also defined as
data property

Data Properties

alignop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#align

Horizontal alignment of displayed text, e.g., Left, Center, Right.
has range
string
is also defined as
object property

arrowHeadop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#arrowHead

Specifies the glyph at the ends of lines and interactions.
has range
string
is also defined as
object property

authorop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#author

The person who created or edited the pathway in question.
has range
string
is also defined as
object property

biopaxRefop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#biopaxRef

Reuse of references defined by BioPAX.
has range
string
is also defined as
object property

boardHeightop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#boardHeight

Range minimum is zero.
has range
float
is also defined as
object property

boardWidthop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#boardWidth

Range minimum is zero.
has range
float
is also defined as
object property

centerXop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#centerX

Middle of a pathway element in the x-direction.
has range
float
is also defined as
object property

centerYop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#centerY

Middle of a pathway element in the y-direction.
has range
float
is also defined as
object property

colorop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#color

The color to be used for visualization.
has range
hex binary
is also defined as
object property

connectorTypeop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#connectorType

Specifies a set of rules to govern layout of Graphical Lines and Interactions. PathVisio (Java): Line Type and GPML: ConnectorType
has range
string
is also defined as
object property

data-Sourceop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#data-Source

Deprecated: Not in use.
has range
string
is also defined as
object property

databaseop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#database

Specifies the datasource for the identifier provided as an Xref. Equivalent to http://vocabularies.bridgedb.org/ops#DataSource conventional name .
has range
string
is also defined as
object property

emailop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#email

Deprecated: An electronic mail address. Used to reference the author or maintainer of a pathway prior to WikiPathways.
has range
string
is also defined as
object property

fillColorop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#fillColor

The hexidecimal color value used to paint the area of an object, not including its border.
has range
hex binary
is also defined as
object property

fontDecorationop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#fontDecoration

Deprecated: Not in use.
has range
string
is also defined as
object property

fontNameop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#fontName

The name of the set of printable text characters to be used for visualization.
has range
string
is also defined as
object property

fontSizeop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#fontSize

The point value for the size of the font.
has range
non negative integer
is also defined as
object property

fontStrikethruop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#fontStrikethru

Deprecated: Not in use.
has range
string
is also defined as
object property

fontStyleop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#fontStyle

The typographic style or font face applied to displayed text, e.g., Arial.
has range
string
is also defined as
object property

fontWeightop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#fontWeight

Thickness of the font used, e.g a bold font would have more weight. Used for DataNodes, Labels and Shapes.
has range
string
is also defined as
object property

graphIdop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#graphId

A GraphId is a unique (per Pathway) identifier for a pathway element, such as DataNode, Interaction, GraphicalLine, Label, Point, Group, Shape, State and Anchor.
has range
string
is also defined as
object property

graphRefop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#graphRef

A GraphRef indicates a "depends on" or child/parent relationship between two Pathway elements. The element with the GraphRef is the child, and the element referred to by the GraphRef is the parent. The parent's GraphId will be specified by the child's GraphRef.
has range
string
is also defined as
object property

groupIdop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#groupId

Uniquely identifies a gpml:Group in a gpml:Pathway.
has range
string
is also defined as
object property

groupRefop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#groupRef

A GroupRef indicates that its element is part of the gpml:Group with the specified GroupId. DataNode, GraphicalLine, Group, Interaction, Label and Shape can be part of a group.
has range
string
is also defined as
object property

heightop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#height

The pixel value for the y-dimensional length of a given object.
has range
float
is also defined as
object property

hrefop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#href

The hyperlink optionally specified in a Label.
has range
string
is also defined as
object property

idop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#id

The identifier of a PublicationXref or Xref object.
has range
string
is also defined as
object property

keyop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#key

Key of the key/value pair in the Attribute class.
has range
string
is also defined as
object property

last-Modifiedop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#last-Modified

The date of the last modification of the pathway.
has range
string
is also defined as
object property

licenseop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#license

The license of a pathway.
has range
string
is also defined as
object property

lineStyleop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#lineStyle

The visual appearance of a line or border, e.g., Solid or Broken.
has range
string
is also defined as
object property

lineThicknessop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#lineThickness

The pixel value for the width of a given line, interaction or border.
has range
string
is also defined as
object property

maintainerop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#maintainer

The maintainer of the pathway. Currently not used in WP.
has range
string
is also defined as
object property

nameop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#name

The name of a pathway.
has range
string
is also defined as
object property

organismop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#organism

The scientific name (e.g., Homo sapiens) of the species being described by the pathway.
has range
string
is also defined as
object property

positionop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#position

Proportional distance of an anchor along the line it belongs to, between 0 and 1.
has range
float
is also defined as
object property

relXop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#relX

RelX is the x-coordinate used when a point or state is linked to a another object - relative coordinate to the object that it is linked to (0,0 - center, 1,1 - bottom-right).
has range
float
is also defined as
object property

relYop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#relY

RelY is the y-coordinate used when a point or state is linked to a another object - relative coordinate to the object that it is linked to (0,0 - center, 1,1 - bottom-right).
has range
float
is also defined as
object property

rotationop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#rotation

The degree value of angular offset relative to the center of a given object.
has range
float
is also defined as
object property

shapeop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#shape

The visual representation of an anchor, e.g., Circle or None.
has range
string
is also defined as
object property

shapeTypeop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#shapeType

Currently: Specifies the glyph (graphical representation) to use for GPML elements (DataNode, Label, Shape, State). Proposed: Expand it to also describe Anchors. It should replace the term currently used to specify the graphical representation of an Anchor. The current term is "Shape," which conflicts with the GPML element named "Shape." See details for term "Shape."
has range
string
is also defined as
object property

sourcedp back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#source

The author, reference or category of a comment. Used to help parse pathway-level comments, e.g., the descriptions displayed at WikiPathways.org are comments with source="WikiPathways-description".
has range
commnet
string

stateTypeop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#stateType

A free text field to describe the nature or category of a given state.
has range
string
is also defined as
object property

styleop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#style

The type of Group, e.g., Complex.
has range
string
is also defined as
object property

textlabelop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#textlabel

TextLabel of an object (DataNode, Group, Label, Shape, State).
has range
string
is also defined as
object property

typeop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#type

Specifies the type of an object (DataNode, GraphicalLine, Interaction).
has range
string
is also defined as
object property

valignop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#valign

Vertical alignment of displayed text, e.g., Top, Middle, Bottom.
has range
string
is also defined as
object property

valueop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#value

Value of the key/value pair in the Attribute class.
has range
string
is also defined as
object property

versionop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#version

The version of a Pathway (currently not used in WP).
has range
string
is also defined as
object property

widthop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#width

The pixel value for the x-dimensional length of a given object.
has range
float
is also defined as
object property

xop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#x

The x-coordinate of a point in the 2-dimensional plane in which a pathway is drawn.
has range
float
is also defined as
object property

yop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#y

The y-coordinate of a point in the 2-dimensional plane in which a pathway is drawn.
has range
float
is also defined as
object property

zorderop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/gpml#zorder

Indicates the zorder of the object in the pathway.
has range
integer
is also defined as
object property

Named Individuals

WikiPathways GPML Vocabularyni back to ToC or Named Individual ToC

IRI: http://vocabularies.wikipathways.org/gpml#

belongs to
concept schemec

Annotation Properties

in schemeap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2004/02/skos/core#inScheme

labelap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#Label

Namespace Declarations back to ToC

default namespace
http://vocabularies.wikipathways.org/gpml#
biopax-level3-owl
http://www.biopax.org/release/biopax-level3.owl#
classes
http://www.biopax.org/owldoc/Level3/classes/
ops
http://vocabularies.bridgedb.org/ops#
owl
http://www.w3.org/2002/07/owl#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
skos
http://www.w3.org/2004/02/skos/core#
xsd
http://www.w3.org/2001/XMLSchema#

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni.