IRI:
http://vocabularies.wikipathways.org/wp#
Version IRI:
http://www.w3.org/2012/pyRdfa/extract?uri=http://vocabularies.wikipathways.org/wp#
Contributors:
Alexander Pico
Andra Waagmeester
Anwesha Bohler
Egon Willighagen
Martina Kutmon
Ryan Miller
Susan Coort
Other visualisation:
Ontology source

Table of Content

  1. Classes
  2. Object Properties
  3. Data Properties
  4. Named Individuals
  5. Annotation Properties
  6. Namespace Declarations

Classes

Bindingc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wp#Binding

A binding interaction between two physical entities resulting in the formation of an explicit complex that is reversible without an external factor (e.g. protein complexes).
has super-classes
DirectedInteractionc

Catalysisc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wp#Catalysis

A process where a chemical reaction is enhanced by the action of a catalyst.
has super-classes
DirectedInteractionc

cell type ontology tagc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wp#celltypeOntologyTag

A term from the Cell Type ontology available on the NCBO's BioPortal (http://bioportal.bioontology.org/ontologies/CL).
has super-classes
ontology tag
is also defined as
object property

Complexc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wp#Complex

A physically bound combination of two or more biological entities.
has super-classes
DataNodec

ComplexBindingc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wp#ComplexBinding

A binding interaction that specifically leads to the formation of a complex.
has super-classes
DirectedInteractionc

Conversionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wp#Conversion

A process in which a biological entity gets converted into another entity. This could be a metabolic conversion where compound gets chemical modified.
has super-classes
DirectedInteractionc

DataNodec back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wp#DataNode

Superclass; deprecated; do not use.
has sub-classes
Complexc, GeneProductc, Metabolitec, Proteinc, Rnac
is in range of
sourceop

DirectedInteractionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wp#DirectedInteraction

Defines a biochemical relationship from a source biological entity to a target biological entity.
has super-classes
Interactionc
has sub-classes
Bindingc, Catalysisc, ComplexBindingc, Conversionc, Inhibitionc, Stimulationc, Transcription Translationc
is in domain of
sourceop, targetop

disease ontology tagc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wp#diseaseOntologyTag

A term from the Human Disease Ontology available on the NCBO's BioPortal (http://bioportal.bioontology.org/ontologies/DOID).
has super-classes
ontology tag
is also defined as
object property

dnac back to ToC or Class ToC

IRI: http://www.biopax.org/release/biopax-level3.owl#Dna

has super-classes
GeneProductc

genec back to ToC or Class ToC

IRI: http://www.biopax.org/release/biopax-level3.owl#Gene

has super-classes
GeneProductc

GeneProductc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wp#GeneProduct

An entity representing any product of a given gene, including DNA, RNA and Protein. This is the most generic representation of a gene-based biomolecule and is useful when more than one representation might be useful in the given context.
has super-classes
DataNodec
has sub-classes
dnac, genec, proteinc, rnac

Inhibitionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wp#Inhibition

A process in which one biological entity restrains, blocks, or suppresses another biological entity or interaction.
has super-classes
DirectedInteractionc

Interactionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wp#Interaction

Defines the biochemical relationship between biological entities.
has sub-classes
DirectedInteractionc

Metabolitec back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wp#Metabolite

Any chemical compound taking part in a pathway. Unlike true metabolites, this node is also used for compounds which are not the product or substrate of a metabolic conversion.
has super-classes
DataNodec
is in range of
BridgeDb ChEBI linkop, BridgeDb ChemSpider linkop, BridgeDb HMDB linkop, BridgeDb PubChem linkop

Pathwayc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wp#Pathway

A biological process representing a set of interactions and relationships among genes, proteins, metabolites, and other factors in the context of cellular compartments, tissues and organisms.

pathway ontology tagc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wp#pathwayOntologyTag

A term from the Pathway Ontology ontology available at NCBO's BioPortal (http://bioportal.bioontology.org/ontologies/PW).
has super-classes
ontology tag
is also defined as
object property

Proteinc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wp#Protein

A biomolecular polymer of amino acids, translated from mRNA.
has super-classes
DataNodec

proteinc back to ToC or Class ToC

IRI: http://www.biopax.org/release/biopax-level3.owl#Protein

has super-classes
GeneProductc

PublicationReferencec back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wp#PublicationReference

A reference to a published article, book or other citable material. Most commonly a primary literature reference that is indexed by PubMed.

Rnac back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wp#Rna

A biomolecular polymer of ribonucleic acids, transcibed from DNA.
has super-classes
DataNodec

rnac back to ToC or Class ToC

IRI: http://www.biopax.org/release/biopax-level3.owl#Rna

has super-classes
GeneProductc

sourcec back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wp#source

The beginning terminus of an interaction.
has super-classes
participants
is also defined as
object property

Stimulationc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wp#Stimulation

An interaction in which the source entity enhances the raate or extent of another reaction or entity.
has super-classes
DirectedInteractionc

targetc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wp#target

The ending terminus of an interaction.
has super-classes
participants
is also defined as
object property

Transcription Translationc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wp#TranscriptionTranslation

An interaction in which the source entity regulates or influences in the transcription or translation of a target entity. Also referred to as a Template Reaction.
has super-classes
DirectedInteractionc

Object Properties

BridgeDb ChEBI linkop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/wp#bdbChEBI

A variable URL to the ChEBI data source.
has range
Metabolitec
resourcec

BridgeDb ChemSpider linkop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/wp#bdbChemspider

A variable URL to the Chemspider data source.
has range
Metabolitec
resourcec

BridgeDb Ensembl linkop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/wp#bdbEnsembl

A variable URL to the Ensembl data source.
has range
resourcec

BridgeDb Entrez Gene linkop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/wp#bdbEntrezGene

A variable URL to the NCBI Gene data source.
has range
resourcec

BridgeDb HGNC linkop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/wp#bdbHgncSymbol

A variable URL to the HUGO Gene Nomenclature Committee (HGNC) data source.
has range
resourcec

BridgeDb HMDB linkop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/wp#bdbHmdb

A variable URL to the Human Metabolome Database (HMDB) data source.
has range
Metabolitec
resourcec

BridgeDb PubChem linkop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/wp#bdbPubChem

A variable URL to the PubChem data source (Compound identifiers).
has range
Metabolitec
resourcec

BridgeDb UniProt linkop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/wp#bdbUniprot

A variable URL to the UniProt data source.
has range
resourcec

cell type ontology tagop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/wp#celltypeOntologyTag

A term from the Cell Type ontology available on the NCBO's BioPortal (http://bioportal.bioontology.org/ontologies/CL).
has domain
pathwayc
has range
resourcec
is also defined as
class

disease ontology tagop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/wp#diseaseOntologyTag

A term from the Human Disease Ontology available on the NCBO's BioPortal (http://bioportal.bioontology.org/ontologies/DOID).
has domain
pathwayc
has range
resourcec
is also defined as
class

ontology tagop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/wp#ontologyTag

A term from an ontology or controlled vocabulary.
has domain
pathwayc
is also defined as
data property

organismop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/wp#organism

The scientific name (e.g., Homo sapiens) of the species being described by the pathway.
has domain
pathwayc
has range
classc
is also defined as
data property

participantsop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/wp#participants

pathway ontology tagop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/wp#pathwayOntologyTag

A term from the Pathway Ontology ontology available at NCBO's BioPortal (http://bioportal.bioontology.org/ontologies/PW).
has domain
pathwayc
has range
resourcec
is also defined as
class

sourceop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/wp#source

The beginning terminus of an interaction.
has domain
DirectedInteractionc
has range
DataNodec
is also defined as
class

targetop back to ToC or Object Property ToC

IRI: http://vocabularies.wikipathways.org/wp#target

The ending terminus of an interaction.
has domain
DirectedInteractionc
is also defined as
class

Data Properties

is aboutdp back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/wp#isAbout

It is the link between the biological entity and the gpml entity. Used in cases of interactions, complexes and groups.

ontology tagop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/wp#ontologyTag

A term from an ontology or controlled vocabulary.
has range
string
is also defined as
object property

organismop back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/wp#organism

The scientific name (e.g., Homo sapiens) of the species being described by the pathway.
is also defined as
object property

organism namedp back to ToC or Data Property ToC

IRI: http://vocabularies.wikipathways.org/wp#organismName

Latin name of the organsm in which this pathway takes place.
has domain
pathwayc
has range
string

Named Individuals

WikiPathways WP Ontologyni back to ToC or Named Individual ToC

IRI: http://vocabularies.wikipathways.org/wp#

belongs to
concept schemec

Annotation Properties

in schemeap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2004/02/skos/core#inScheme

organismap back to ToC or Annotation Property ToC

IRI: http://www.biopax.org/release/biopax-level3.owl#organism

has super-properties
organism

Namespace Declarations back to ToC

default namespace
http://vocabularies.wikipathways.org/wp#
biopax-level3
http://www.biopax.org/release/biopax-level3.owl#
owl
http://www.w3.org/2002/07/owl#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
skos
http://www.w3.org/2004/02/skos/core#
terms
http://purl.org/dc/terms/
void
http://rdfs.org/ns/void#
wp
http://vocabularies.wikipathways.org/wp#
xsd
http://www.w3.org/2001/XMLSchema#

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni.