WikiPathways WP Types Ontology

IRI:
http://vocabularies.wikipathways.org/wpTypes#
Version IRI:
http://www.w3.org/2012/pyRdfa/extract?uri=http://vocabularies.wikipathways.org/wpTypes#
Contributors:
Andra Waagmeester
Egon Willighagen
Martina Kutmon
Ryan Miller
Other visualisation:
Ontology source

Table of Content

  1. Classes
  2. Named Individuals
  3. Annotation Properties
  4. Namespace Declarations

Classes

Arrow interactionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#Arrow

A style of line or interaction that includes a glyph at the terminus.
has super-classes
Interactionc

Broken Arrow interactionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#BrokenArrow

A style of line or interaction with a glyph at the terminus that allows for regular gaps in their paths.
has super-classes
Interactionc

Broken Line interactionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#BrokenLine

A style of line or interaction that allows for regular gaps in their paths.
has super-classes
Interactionc

Curved interactionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#Curved

A style of line or interaction that allows for smooth arcs and bends in their paths.
has super-classes
Interactionc

Datanodec back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#DataNode

has sub-classes
GeneProduct nodec, Metabolite nodec, Pathway nodec, Protein nodec, RNA nodec, Unknown nodec

Elbow interactionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#Elbow

A style of line or interaction that allows for 90 degree bends in their paths.
has super-classes
Interactionc

GeneProduct nodec back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#GeneProduct

An entity representing any product of a given gene, including DNA, RNA and Protein. This is the most generic representation of a gene-based biomolecule and is useful when more than one representation might be useful in the given context.
has super-classes
Datanodec
is also defined as
named individual

Interactionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#Interaction

Denotes a biological entity that forms a node in a pathway and has some biological meaning associated with it. For a list of the gpml:DataNode types supported at WikiPathways, see subclasses of wp:DataNode or the wpTypes vocabulary defined for use in applications..
has sub-classes
Arrow interactionc, Broken Arrow interactionc, Broken Line interactionc, Curved interactionc, Elbow interactionc, Line interactionc, Mim-Binding interactionc, Mim-Branching-Left interactionc, Mim-Branching-Right interactionc, Mim-Catalysis interactionc, Mim-Cleavage interactionc, Mim-Conversion interactionc, Mim-Covalent-Bond interactionc, Mim-Gap interactionc, Mim-Inhibition interactionc, Mim-Modification interactionc, Mim-Necessary-Stimulation interactionc, Mim-Stimulation interactionc, Mim-Transcription-Translation interactionc, TBar interactionc

Line interactionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#Line

A visual annotation, often used to partition space or connect other annotations.
has super-classes
Interactionc

Metabolite nodec back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#Metabolite

An entity representing a metabolite, including chemical compounds that participate in or are produced by metabolic reactions, but also other chemical compounds that participate in a pathway otherwise.
has super-classes
Datanodec

Mim-Binding interactionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#MimBinding

MIM Specification
has super-classes
Interactionc

Mim-Branching-Left interactionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#MimBranchingLeft

MIM Specification
has super-classes
Interactionc

Mim-Branching-Right interactionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#MimBranchingRight

MIM Specification
has super-classes
Interactionc

Mim-Catalysis interactionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#MimCatalysis

MIM Specification
has super-classes
Interactionc

Mim-Cleavage interactionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#MimCleavage

MIM Specification
has super-classes
Interactionc

Mim-Conversion interactionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#MimConversion

MIM Specification
has super-classes
Interactionc

Mim-Covalent-Bond interactionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#MimCovalentBond

MIM Specification
has super-classes
Interactionc

Mim-Gap interactionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#MimGap

MIM Specification
has super-classes
Interactionc

Mim-Inhibition interactionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#MimInhibition

MIM Specification
has super-classes
Interactionc

Mim-Modification interactionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#MimModification

MIM Specification
has super-classes
Interactionc

Mim-Necessary-Stimulation interactionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#MimNecessaryStimulation

MIM Specification
has super-classes
Interactionc

Mim-Stimulation interactionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#MimStimulation

MIM Specification
has super-classes
Interactionc

Mim-Transcription-Translation interactionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#MimTranscriptionTranslation

MIM Specification
has super-classes
Interactionc

Pathway nodec back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#Pathway

A biological process representing a set of interactions and relationships among genes, proteins, metabolites, and other factors in the context of cellular compartments, tissues and organisms.
has super-classes
Datanodec
is also defined as
named individual

Protein nodec back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#Protein

A biomolecular polymer of amino acids, translated from mRNA.
has super-classes
Datanodec
is also defined as
named individual

RNA nodec back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#Rna

An entity representing an RNA peptide, including mRNA, miRNA, etc. This is commonly used to explicitly represent mRNA transcripts (excluding DNA or protein forms) or other RNA species, like miRNA, exRNA, lncRNA, etc.
has super-classes
Datanodec

TBar interactionc back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#TBar

An interaction in which the source entity has an inhibitory effect on the target entity or interaction.
has super-classes
Interactionc

Unknown nodec back to ToC or Class ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#Unknown

An unspecified biological entity or factor. Should only be used if the type is truly unknown or is different from the ones covered by other data node types.
has super-classes
Datanodec

Named Individuals

GeneProduct nodeni back to ToC or Named Individual ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#GeneProduct

belongs to
owl: classc
is also defined as
class

Pathway nodeni back to ToC or Named Individual ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#Pathway

belongs to
owl: classc
is also defined as
class

Protein nodeni back to ToC or Named Individual ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#Protein

belongs to
owl: classc
is also defined as
class

WikiPathways WP Types Ontologyni back to ToC or Named Individual ToC

IRI: http://vocabularies.wikipathways.org/wpTypes#

belongs to
concept schemec

Annotation Properties

descriptionap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/description

in schemeap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2004/02/skos/core#inScheme

Namespace Declarations back to ToC

default namespace
http://vocabularies.wikipathways.org/wpTypes#
owl
http://www.w3.org/2002/07/owl#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
skos
http://www.w3.org/2004/02/skos/core#
terms
http://purl.org/dc/terms/
xsd
http://www.w3.org/2001/XMLSchema#

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni.