<?xml version="1.0"?> <rdf:RDF xmlns="https://w3id.org/hereditary/ontology/phenoclinical/schema/" xml:base="https://w3id.org/hereditary/ontology/phenoclinical/schema/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:ns="http://creativecommons.org/ns#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:adms="http://www.w3.org/ns/adms#"
The Hereditary ontology models clinical and genomics data to provide a unifying layer to query different database sources through an Ontology-Based Data Access (OBDA) framework.
The Hereditary Ontology for Phenoclinical Data
## All DBpedia Archivo ontologies from w3id.org domain Each artifact in this group deals as the archive for snapshots of one ontology of the [DBpedia Archivo](https://databus.dbpedia.org/ontologies) - A Web-Scale Interface for Ontology Archiving under Consumer-oriented Aspects. Find out more at [http://archivo.dbpedia.org](http://archivo.dbpedia.org). The description for the individual files in the artifact can be found [here](http://dev.dbpedia.org/DBpedia_Archvio#files).
## DBpedia Archivo Ontology Snapshot | Attribute | Value | | - | - | | Ontology URI | <https://w3id.org/hereditary/ontology/phenoclinical/schema/> | Archivo Ontology Factsheet| [Link](http://archivo.dbpedia.org/info?o=https://w3id.org/hereditary/ontology/phenoclinical/schema/) | Snapshot File URL | <https://hereditary.dei.unipd.it/ontology/phenoclinical/schema/hero_phenoclinical.owl> | Snapshot OWL Version IRI | <https://w3id.org/hereditary/ontology/phenoclinical/1.0/> | Snapshot Time | 2024-11-24 07:44:15 The [DBpedia Archivo Databus agent](https://databus.dbpedia.org/ontologies) generates only basic, static documentation for the archived snapshots of the ontologies. ## Ontology Metadata DBpedia Archivo extracts metadata from the ontology for well known properties (e.g. dct:description). This subsection shows the content of every property individually using a separate heading. ### dct:description The Hereditary ontology models clinical and genomics data to provide a unifying layer to query different database sources through an Ontology-Based Data Access (OBDA) framework. This part of the ontology focuses on phenoclinical data for ALS and MS patients. ### rdfs:comment A functional unit of heredity which occupies a specific position on a particular chromosome and serves as the template for a product that contributes to a phenotype or a biological function. [Definition Source: NCIT] The taxonomy is based on NCIT. ### rdfs:comment This taxonomy describes the type of surgical procedures. The taxonomy is based on SNOMED-CT. ### rdfs:comment This taxonomy comprises disease, disorder or findings. The taxonomy is mainly based on NCIT. ### rdfs:comment Any detrimental or unintended response associated with the use of a medication in humans. [Definition Source: NCIT] The taxonomy is based on OAE. ### rdfs:comment This taxonomy describes the different type of relative a person can have. The taxonomy is based on NCIT. ### rdfs:comment This taxonomy describes the occupation of a person. The taxonomy is based on ECO occupations. ### rdfs:comment Any natural, endogenously-derived, synthetic or semi-synthetic compound with pharmacologic activity. A pharmacologic substance has one or more specific mechanism of action(s) through which it exerts one or more effect(s) on the human or animal body. They can be used to potentially prevent, diagnose, treat or relieve symptoms of a disease. Formulation specific agents and some combination agents are also classified as pharmacologic substances. [Definition Source: NCIT] The taxonomy is based on ATC. ### rdfs:comment This taxonomy describes the different ethinic groups. The taxonomy is based on SNOMED-CT. ### rdfs:comment This taxonomy describes the type of therapeutic procedures. The taxonomy is manly based on NCIT. ### rdfs:comment Named locations of or within the body. [Definition Source: NCIT] The taxnomy is mainly based on NCIT.
There are 1 input files: /usr/local/archivo-data/w3id.org/hereditary--ontology--phenoclinical--schema/2024.11.24-074415/hereditary--ontology--phenoclinical--schema_type=parsed.ttl Start loading Nov 24, 2024 7:44:43 AM org.mindswap.pellet.jena.graph.loader.DefaultGraphLoader addUnsupportedFeature WARNING: Unsupported axiom: Ignoring triple with unknown property from OWL namespace: https://w3id.org/hereditary/ontology/phenoclinical/schema/ @owl:versionIRI https://w3id.org/hereditary/ontology/phenoclinical/1.0/ Finished loading in 00:00:00.664 Input size: Classes = 97, Properties = 319, Individuals = 713 Expressivity: ALCHF(D) Start consistency check Finished consistency check in 00:00:00.090
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WARNING: An illegal reflective access operation has occurred WARNING: Illegal reflective access by com.google.inject.internal.cglib.core.$ReflectUtils$2 (file:/usr/lib/pellet/cli/target/pelletcli/lib/guice-4.0.jar) to method java.lang.ClassLoader.defineClass(java.lang.String,byte[],int,int,java.security.ProtectionDomain) WARNING: Please consider reporting this to the maintainers of com.google.inject.internal.cglib.core.$ReflectUtils$2 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations WARNING: All illegal access operations will be denied in a future release [main] WARN org.semanticweb.owlapi.util.SAXParsers - http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit not supported by parser type org.apache.xerces.jaxp.SAXParserImpl [main] WARN org.semanticweb.owlapi.util.SAXParsers - entityExpansionLimit not supported by parser type org.apache.xerces.jaxp.SAXParserImpl [main] WARN org.semanticweb.owlapi.util.SAXParsers - http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit not supported by parser type org.apache.xerces.jaxp.SAXParserImpl [main] WARN org.semanticweb.owlapi.util.SAXParsers - entityExpansionLimit not supported by parser type org.apache.xerces.jaxp.SAXParserImpl [main] WARN org.semanticweb.owlapi.util.SAXParsers - http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit not supported by parser type org.apache.xerces.jaxp.SAXParserImpl
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . @prefix : <https://w3id.org/hereditary/ontology/phenoclinical/schema/> . @prefix dc: <http://purl.org/dc/elements/1.1/> . @prefix ns: <http://creativecommons.org/ns#> . @prefix owl: <http://www.w3.org/2002/07/owl#> . @prefix xml: <http://www.w3.org/XML/1998/namespace> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . @prefix adms: <http://www.w3.org/ns/adms#> . @prefix foaf: <http://xmlns.com/foaf/0.1/> . @prefix om-1: <http://www.wurvoc.org/vocabularies/om-1.8/> .
<https://w3id.org/hereditary/ontology/phenoclinical/schema/> <http://purl.org/dc/terms/license> "Copyright 2024-2027 University of Padua, Italy\n\nLicensed under the\n\nCreative Commons Attribution 4.0 International License\n https://creativecommons.org/licenses/by/4.0/\n\nYou may obtain a copy of the License at\n https://creativecommons.org/licenses/by/4.0/legalcode\n\nThis work has been supported by the HEREDITARY project\n https://hereditary-project.eu/\n\n funded by the European Union\u2019s Horizon Europe research and innovation programme \n under the grant agreement No GA101137074" . <https://w3id.org/hereditary/ontology/phenoclinical/schema/> <http://purl.org/dc/terms/title> "The Hereditary Ontology for Phenoclinical Data"@en . <https://w3id.org/hereditary/ontology/phenoclinical/schema/> <http://www.w3.org/2000/01/rdf-schema#comment> "The Hereditary ontology models clinical and genomics data to provide a unifying layer to query different database sources through an Ontology-Based Data Access (OBDA) framework. This part of the ontology focuses on phenoclinical data for ALS and MS patients."@en .
<https://w3id.org/hereditary/ontology/phenoclinical/schema/> <http://purl.org/dc/elements/1.1/title> "The Hereditary Ontology for Phenoclinical Data"@en . <https://w3id.org/hereditary/ontology/phenoclinical/schema/> <http://purl.org/dc/terms/description> "The Hereditary ontology models clinical and genomics data to provide a unifying layer to query different database sources through an Ontology-Based Data Access (OBDA) framework. This part of the ontology focuses on phenoclinical data for ALS and MS patients."@en . <https://w3id.org/hereditary/ontology/phenoclinical/schema/> <http://purl.org/dc/terms/license> "Copyright 2024-2027 University of Padua, Italy\n\nLicensed under the\n\nCreative Commons Attribution 4.0 International License\n https://creativecommons.org/licenses/by/4.0/\n\nYou may obtain a copy of the License at\n https://creativecommons.org/licenses/by/4.0/legalcode\n\nThis work has been supported by the HEREDITARY project\n https://hereditary-project.eu/\n\n funded by the European Union\u2019s Horizon Europe research and innovation programme \n under the grant agreement No GA101137074"@en .
WARNING: An illegal reflective access operation has occurred WARNING: Illegal reflective access by com.google.inject.internal.cglib.core.$ReflectUtils$1 (file:/usr/local/src/webapp/archivo/archivo/helpingBinaries/profilechecker-1.1.0.jar) to method java.lang.ClassLoader.defineClass(java.lang.String,byte[],int,int,java.security.ProtectionDomain) WARNING: Please consider reporting this to the maintainers of com.google.inject.internal.cglib.core.$ReflectUtils$1 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations WARNING: All illegal access operations will be denied in a future release [main] ERROR uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl - Illegal redeclarations of entities: reuse of entity http://www.wurvoc.org/vocabularies/om-1.8/symbol in punning not allowed [Declaration(AnnotationProperty(<http://www.wurvoc.org/vocabularies/om-1.8/symbol>)), Declaration(DataProperty(<http://www.wurvoc.org/vocabularies/om-1.8/symbol>))] [main] INFO org.semanticweb.owlapi.rdf.rdfxml.parser.TripleHandlers - Usage of rdf vocabulary: http://www.w3.org/2004/02/skos/core#inScheme -> http://www.w3.org/1999/02/22-rdf-syntax-ns#type -> http://www.w3.org/1999/02/22-rdf-syntax-ns#Property [main] INFO org.semanticweb.owlapi.rdf.rdfxml.parser.TripleHandlers - Usage of rdf vocabulary: http://www.w3.org/2004/02/skos/core#hasTopConcept -> http://www.w3.org/1999/02/22-rdf-syntax-ns#type -> http://www.w3.org/1999/02/22-rdf-syntax-ns#Property [main] INFO org.semanticweb.owlapi.rdf.rdfxml.parser.TripleHandlers - Usage of rdf vocabulary: http://www.w3.org/2004/02/skos/core#topConceptOf -> http://www.w3.org/1999/02/22-rdf-syntax-ns#type -> http://www.w3.org/1999/02/22-rdf-syntax-ns#Property [main] INFO org.semanticweb.owlapi.rdf.rdfxml.parser.TripleHandlers - Usage of rdf vocabulary: http://www.w3.org/2004/02/skos/core#prefLabel -> http://www.w3.org/1999/02/22-rdf-syntax-ns#type -> http://www.w3.org/1999/02/22-rdf-syntax-ns#Property
@prefix sh: <http://www.w3.org/ns/shacl#> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . [] a sh:ValidationReport ; sh:conforms false ; sh:result [ a sh:ValidationResult ; sh:focusNode <http://purl.obolibrary.org/obo/NCIT_C13717> ; sh:resultMessage "No license found at all (neither dct:license, xhv:license nor cc:license)"@en ; sh:resultSeverity sh:Violation ; sh:sourceConstraintComponent sh:OrConstraintComponent ;
@prefix dct: <http://purl.org/dc/terms/> . @prefix sh: <http://www.w3.org/ns/shacl#> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . [] a sh:ValidationReport ; sh:conforms false ; sh:result [ a sh:ValidationResult ; sh:focusNode <https://w3id.org/hereditary/ontology/phenoclinical/schema/groupTaxonomy> ; sh:resultMessage "No dct:license statement found"@en ; sh:resultPath dct:license ;
@prefix sh: <http://www.w3.org/ns/shacl#> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . [] a sh:ValidationReport ; sh:conforms false ; sh:result [ a sh:ValidationResult ; sh:focusNode <https://w3id.org/hereditary/ontology/phenoclinical/schema/kinshipTypeTaxonomy> ; sh:resultMessage "Archivo requires either dct:abstract, dct:description or dc:description for a short comment about the ontology."@en ; sh:resultSeverity sh:Violation ; sh:sourceConstraintComponent sh:OrConstraintComponent ;
<http://creativecommons.org/ns#license> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#AnnotationProperty> . <http://data.europa.eu/esco/isco/C01> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#NamedIndividual> . <http://data.europa.eu/esco/isco/C01> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2004/02/skos/core#Concept> . <http://data.europa.eu/esco/isco/C01> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/brainteaser/ontology/schema/Occupation> . <http://data.europa.eu/esco/isco/C01> <http://www.w3.org/2000/01/rdf-schema#comment> "Commissioned armed forces officers provide leadership and management to organizational units in the armed forces and/or perform similar tasks to those performed in a variety of civilian occupations outside the armed forces. This group includes all members of the armed forces holding the rank of second lieutenant (or equivalent) or higher. Competent performance in most occupations in this sub-major group requires skills at the fourth ISCO skill level.\nOccupations in this sub-major group are classified into the following minor group:\n011 Commissioned Armed Forces Officers\nExcluded from this group are:\n- jobs held by persons in civilian employment of government establishments concerned with defence issues;\n- police (other than military police);\n- customs inspectors and members of border or other armed civilian services."@en . <http://data.europa.eu/esco/isco/C01> <http://www.w3.org/2000/01/rdf-schema#label> "Commissioned armed forces officers"@en . <http://data.europa.eu/esco/isco/C01> <http://www.w3.org/2004/02/skos/core#broaderTransitive> <http://data.europa.eu/esco/isco/C0> . <http://data.europa.eu/esco/isco/C01> <http://www.w3.org/2004/02/skos/core#inScheme> <https://w3id.org/hereditary/ontology/phenoclinical/schema/occupationTaxonomy> . <http://data.europa.eu/esco/isco/C02> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#NamedIndividual> . <http://data.europa.eu/esco/isco/C02> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2004/02/skos/core#Concept> .
@prefix dc: <http://purl.org/dc/elements/1.1/> . @prefix owl: <http://www.w3.org/2002/07/owl#> . @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . @prefix sh: <http://www.w3.org/ns/shacl#> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . [] a sh:ValidationReport ; sh:conforms false ; sh:result [ a sh:ValidationResult ; sh:focusNode <https://w3id.org/brainteaser/ontology/schema/alsfrs7> ;
<?xml version="1.0" encoding="utf-8"?> <rdf:RDF xmlns:Pollution="http://ontology.eil.utoronto.ca/GCI/Environment/Pollution.owl#" xmlns:adms="http://www.w3.org/ns/adms#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:ns="http://creativecommons.org/ns#" xmlns:om-1="http://www.wurvoc.org/vocabularies/om-1.8/" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:skos="http://www.w3.org/2004/02/skos/core#" xmlns:terms="http://purl.org/dc/terms/" xmlns:vann="http://purl.org/vocab/vann/" xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns="https://w3id.org/hereditary/ontology/phenoclinical/schema/"> <rdf:Description rdf:about="https://w3id.org/hereditary/ontology/phenoclinical/schema/"> <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Ontology"/> </rdf:Description> <rdf:Description rdf:about="https://w3id.org/hereditary/ontology/phenoclinical/schema/"> <owl:versionIRI rdf:resource="https://w3id.org/hereditary/ontology/phenoclinical/1.0/"/> </rdf:Description> <rdf:Description rdf:about="https://w3id.org/hereditary/ontology/phenoclinical/schema/"> <owl:imports rdf:resource="http://ontology.eil.utoronto.ca/GCI/Environment/Pollution.owl"/>
There are 1 input files: /usr/local/archivo-data/w3id.org/hereditary--ontology--phenoclinical--schema/2024.11.24-074415/hereditary--ontology--phenoclinical--schema_type=parsed.ttl Start loading Nov 24, 2024 7:44:45 AM org.mindswap.pellet.jena.graph.loader.DefaultGraphLoader addUnsupportedFeature WARNING: Unsupported axiom: Ignoring triple with unknown property from OWL namespace: https://w3id.org/hereditary/ontology/phenoclinical/schema/ @owl:versionIRI https://w3id.org/hereditary/ontology/phenoclinical/1.0/ Finished loading in 00:00:00.614 Input size: Classes = 97, Properties = 319, Individuals = 713 Expressivity: ALCHF(D) Start consistency check Finished consistency check in 00:00:00.072
<https://w3id.org/hereditary/ontology/phenoclinical/schema/> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Ontology> . <https://w3id.org/hereditary/ontology/phenoclinical/schema/> <http://www.w3.org/2002/07/owl#versionIRI> <https://w3id.org/hereditary/ontology/phenoclinical/1.0/> . <https://w3id.org/hereditary/ontology/phenoclinical/schema/> <http://www.w3.org/2002/07/owl#imports> <http://ontology.eil.utoronto.ca/GCI/Environment/Pollution.owl> . <https://w3id.org/hereditary/ontology/phenoclinical/schema/> <http://www.w3.org/2002/07/owl#imports> <http://www.w3.org/2004/02/skos/core> . <https://w3id.org/hereditary/ontology/phenoclinical/schema/> <http://purl.org/dc/elements/1.1/title> "The Hereditary Ontology for Phenoclinical Data"@en . <https://w3id.org/hereditary/ontology/phenoclinical/schema/> <http://purl.org/dc/terms/creator> <https://orcid.org/0000-0002-0676-682X> . <https://w3id.org/hereditary/ontology/phenoclinical/schema/> <http://purl.org/dc/terms/creator> <https://orcid.org/0000-0003-4970-4554> . <https://w3id.org/hereditary/ontology/phenoclinical/schema/> <http://purl.org/dc/terms/description> "The Hereditary ontology models clinical and genomics data to provide a unifying layer to query different database sources through an Ontology-Based Data Access (OBDA) framework. This part of the ontology focuses on phenoclinical data for ALS and MS patients."@en . <https://w3id.org/hereditary/ontology/phenoclinical/schema/> <http://purl.org/dc/terms/license> "Copyright 2024-2027 University of Padua, Italy\n\nLicensed under the\n\nCreative Commons Attribution 4.0 International License\n https://creativecommons.org/licenses/by/4.0/\n\nYou may obtain a copy of the License at\n https://creativecommons.org/licenses/by/4.0/legalcode\n\nThis work has been supported by the HEREDITARY project\n https://hereditary-project.eu/\n\n funded by the European Union\u2019s Horizon Europe research and innovation programme \n under the grant agreement No GA101137074"@en . <https://w3id.org/hereditary/ontology/phenoclinical/schema/> <http://www.w3.org/2002/07/owl#versionInfo> "1.0"^^<http://www.w3.org/2001/XMLSchema#decimal> .
Metadata created by the DBpedia Databus Maven Plugin: https://github.com/dbpedia/databus-maven-plugin (Version 1.3-SNAPSHOT) The DataID ontology is a metadata omnibus, which can be extended to be interoperable with all metadata formats Note that the metadata (the dataid.ttl file) is always CC-0, the files are licensed individually Metadata created by https://yum-yab.github.io/webid.ttl#onto
DataID metadata for w3id.org/hereditary--ontology--phenoclinical--schema