WARNING: An illegal reflective access operation has occurred WARNING: Illegal reflective access by com.google.inject.internal.cglib.core.$ReflectUtils$2 (file:/usr/lib/pellet/cli/target/pelletcli/lib/guice-4.0.jar) to method java.lang.ClassLoader.defineClass(java.lang.String,byte[],int,int,java.security.ProtectionDomain) WARNING: Please consider reporting this to the maintainers of com.google.inject.internal.cglib.core.$ReflectUtils$2 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations WARNING: All illegal access operations will be denied in a future release [main] WARN org.semanticweb.owlapi.util.SAXParsers - http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit not supported by parser type org.apache.xerces.jaxp.SAXParserImpl [main] WARN org.semanticweb.owlapi.util.SAXParsers - entityExpansionLimit not supported by parser type org.apache.xerces.jaxp.SAXParserImpl [main] WARN org.semanticweb.owlapi.util.SAXParsers - http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit not supported by parser type org.apache.xerces.jaxp.SAXParserImpl [main] WARN org.semanticweb.owlapi.util.SAXParsers - entityExpansionLimit not supported by parser type org.apache.xerces.jaxp.SAXParserImpl [main] WARN org.semanticweb.owlapi.util.SAXParsers - http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit not supported by parser type org.apache.xerces.jaxp.SAXParserImpl
There are 1 input files: /usr/local/archivo-data/w3id.org/pmd--co/2023.12.10-130021/pmd--co_type=parsed.ttl Start loading Dec 10, 2023 1:08:03 PM org.mindswap.pellet.jena.graph.loader.DefaultGraphLoader addUnsupportedFeature WARNING: Unsupported axiom: Ignoring triple with unknown property from OWL namespace: https://w3id.org/pmd/co @owl:versionIRI https://w3id.org/pmd/co/2.0.7 Finished loading in 00:00:00.393 Input size: Classes = 216, Properties = 80, Individuals = 12 Expressivity: ALCHOIF(D) Start consistency check Finished consistency check in 00:00:00.044
Archivo Ontology Snapshot for https://w3id.org/pmd/co
Platform Material Digital Core Ontology (PMDco)
## All DBpedia Archivo ontologies from w3id.org domain Each artifact in this group deals as the archive for snapshots of one ontology of the [DBpedia Archivo](https://databus.dbpedia.org/ontologies) - A Web-Scale Interface for Ontology Archiving under Consumer-oriented Aspects. Find out more at [http://archivo.dbpedia.org](http://archivo.dbpedia.org). The description for the individual files in the artifact can be found [here](http://dev.dbpedia.org/DBpedia_Archvio#files).
## DBpedia Archivo Ontology Snapshot | Attribute | Value | | - | - | | Ontology URI | <https://w3id.org/pmd/co> | Archivo Ontology Factsheet| [Link](http://archivo.dbpedia.org/info?o=https://w3id.org/pmd/co) | Snapshot File URL | <https://materialdigital.github.io/core-ontology/ontology.rdf> | Snapshot OWL Version IRI | <https://w3id.org/pmd/co/2.0.7> | Snapshot Time | 2023-12-10 13:00:21 The [DBpedia Archivo Databus agent](https://databus.dbpedia.org/ontologies) generates only basic, static documentation for the archived snapshots of the ontologies. ## Ontology Metadata DBpedia Archivo extracts metadata from the ontology for well known properties (e.g. dct:description). This subsection shows the content of every property individually using a separate heading. ### rdfs:comment The PMD Core Ontology (PMDco) is a comprehensive framework for representing knowledge that encompasses fundamental concepts from the domains of materials science and engineering (MSE). The PMDco has been designed as a mid-level ontology to establish a connection between specific MSE application ontologies and the domain neutral concepts found in established top-level ontologies. The primary goal of the PMDco is to promote interoperability between diverse domains. PMDco's class structure is both understandable and extensible, making it an efficient tool for organizing MSE knowledge. It serves as a semantic intermediate layer that unifies MSE knowledge representations, enabling data and metadata to be systematically integrated on key terms within the MSE domain. With PMDco, it is possible to seamlessly trace data generation. The design of PMDco is based on the W3C Provenance Ontology (PROV-O), which provides a standard framework for capturing the generation, derivation, and attribution of resources. By building on this foundation, PMDco facilitates the integration of data from various sources and the creation of complex workflows. In summary, PMDco is a valuable tool for researchers and practitioners in the MSE domains. It provides a common language for representing and sharing knowledge, allowing for efficient collaboration and promoting interoperability between diverse domains. Its design allows for the systematic integration of data and metadata, enabling seamless traceability of data generation. Overall, PMDco is a crucial step towards a unified and comprehensive understanding of the MSE domain. PMDco at GitHub: https://github.com/materialdigital/core-ontology
<http://purl.obolibrary.org/obo/CHEBI_24431> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Class> . <http://purl.obolibrary.org/obo/CHEBI_24431> <http://www.w3.org/2000/01/rdf-schema#label> "Chemical Entity"@en . <http://purl.obolibrary.org/obo/CHEBI_24431> <https://w3id.org/pmd/co/definitionSource> "ChEBI ontology https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:24431#"@en . <http://purl.obolibrary.org/obo/IAO_0000002> <http://purl.obolibrary.org/obo/IAO_0000111> "example to be eventually removed"@en . <http://purl.obolibrary.org/obo/IAO_0000002> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.obolibrary.org/obo/IAO_0000078> . <http://purl.obolibrary.org/obo/IAO_0000002> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#NamedIndividual> . <http://purl.obolibrary.org/obo/IAO_0000002> <http://www.w3.org/2000/01/rdf-schema#label> "example to be eventually removed"@en . <http://purl.obolibrary.org/obo/IAO_0000078> <http://purl.obolibrary.org/obo/IAO_0000111> "curation status specification"@en . <http://purl.obolibrary.org/obo/IAO_0000078> <http://purl.obolibrary.org/obo/IAO_0000114> <http://purl.obolibrary.org/obo/IAO_0000125> . <http://purl.obolibrary.org/obo/IAO_0000078> <http://purl.obolibrary.org/obo/IAO_0000115> "The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value."@en .
<?xml version="1.0" encoding="UTF-8"?> Platform Material Digital Core Ontology (PMDco) Platform Material Digital Core Ontology (PMDco) $(document).ready( function () { jQuery(".markdown").each(function(el){ jQuery(this).after(marked(jQuery(this).text())).remove()}); var list = $('a[name=" https://materialdigital.github.io/core-ontology/ontology.rdf "]'); if (list.size() != 0) {
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . @prefix : <https://w3id.org/pmd/co#> . @prefix co: <https://w3id.org/pmd/co/> . @prefix dc: <http://purl.org/dc/elements/1.1/> . @prefix obo: <http://purl.obolibrary.org/obo/> . @prefix owl: <http://www.w3.org/2002/07/owl#> . @prefix xml: <http://www.w3.org/XML/1998/namespace> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . @prefix prov: <http://www.w3.org/ns/prov#> . @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
<?xml version="1.0"?> <rdf:RDF xmlns="https://w3id.org/pmd/co#" xml:base="https://w3id.org/pmd/co" xmlns:co="https://w3id.org/pmd/co/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:obo="http://purl.obolibrary.org/obo/" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
<https://w3id.org/pmd/co> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Ontology> . <https://w3id.org/pmd/co> <http://www.w3.org/2002/07/owl#versionIRI> <https://w3id.org/pmd/co/2.0.7> . <https://w3id.org/pmd/co> <http://www.w3.org/2002/07/owl#imports> <http://www.w3.org/ns/prov-o-inverses-20130430> . <https://w3id.org/pmd/co> <http://purl.org/dc/elements/1.1/creator> <https://orcid.org/0000-0001-7192-7143> . <https://w3id.org/pmd/co> <http://purl.org/dc/elements/1.1/creator> <https://orcid.org/0000-0002-3717-7104> . <https://w3id.org/pmd/co> <http://purl.org/dc/elements/1.1/creator> <https://orcid.org/0000-0002-7094-5371> . <https://w3id.org/pmd/co> <http://purl.org/dc/elements/1.1/creator> <https://orcid.org/0000-0002-9014-2920> . <https://w3id.org/pmd/co> <http://purl.org/dc/elements/1.1/creator> <https://orcid.org/0000-0003-1649-6832> . <https://w3id.org/pmd/co> <http://purl.org/dc/elements/1.1/creator> <https://orcid.org/0000-0003-4971-3645> . <https://w3id.org/pmd/co> <http://purl.org/dc/elements/1.1/creator> <https://orcid.org/0009-0000-6469-744X> .
@prefix sh: <http://www.w3.org/ns/shacl#> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . [] a sh:ValidationReport ; sh:conforms false ; sh:result [ a sh:ValidationResult ; sh:focusNode <https://w3id.org/pmd/co> ; sh:resultMessage "Archivo requires either dct:abstract, dct:description or dc:description for a short comment about the ontology."@en ; sh:resultSeverity sh:Violation ; sh:sourceConstraintComponent sh:OrConstraintComponent ;
Metadata created by the DBpedia Databus Maven Plugin: https://github.com/dbpedia/databus-maven-plugin (Version 1.3-SNAPSHOT) The DataID ontology is a metadata omnibus, which can be extended to be interoperable with all metadata formats Note that the metadata (the dataid.ttl file) is always CC-0, the files are licensed individually Metadata created by https://yum-yab.github.io/webid.ttl#onto
DataID metadata for w3id.org/pmd--co
There are 1 input files: /usr/local/archivo-data/w3id.org/pmd--co/2023.12.10-130021/pmd--co_type=parsed.ttl Start loading Dec 10, 2023 1:08:02 PM org.mindswap.pellet.jena.graph.loader.DefaultGraphLoader addUnsupportedFeature WARNING: Unsupported axiom: Ignoring triple with unknown property from OWL namespace: https://w3id.org/pmd/co @owl:versionIRI https://w3id.org/pmd/co/2.0.7 Finished loading in 00:00:00.402 Input size: Classes = 216, Properties = 80, Individuals = 12 Expressivity: ALCHOIF(D) Start consistency check Finished consistency check in 00:00:00.045
⊤ ⊑ ∀ RO_0000087.Role LaboratoryRole ⊑ ∃ RO_0000087⁻.Organization DepartmentRole ⊑ ∃ RO_0000087⁻.Organization ∃ RO_0000087.⊤ ⊑ Agent
@prefix sh: <http://www.w3.org/ns/shacl#> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . [] a sh:ValidationReport ; sh:conforms true .
<?xml version="1.0" encoding="utf-8"?> <rdf:RDF xmlns:co="https://w3id.org/pmd/co/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:obo="http://purl.obolibrary.org/obo/" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:prov="http://www.w3.org/ns/prov#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:skos="http://www.w3.org/2004/02/skos/core#" xmlns:swrl="http://www.w3.org/2003/11/swrl#" xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#" xmlns:swrlb="http://www.w3.org/2003/11/swrlb#" xmlns:terms="http://purl.org/dc/terms/" xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns="https://w3id.org/pmd/co#"> <rdf:Description rdf:about="https://w3id.org/pmd/co"> <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Ontology"/> </rdf:Description> <rdf:Description rdf:about="https://w3id.org/pmd/co"> <owl:versionIRI rdf:resource="https://w3id.org/pmd/co/2.0.7"/> </rdf:Description> <rdf:Description rdf:about="https://w3id.org/pmd/co"> <owl:imports rdf:resource="http://www.w3.org/ns/prov-o-inverses-20130430"/>
{ "http-data": { "accessed": "2023.12.10; 13:07:53", "best-header": "application/rdf+xml", "content-length": "39561", "e-tag": "W/\"65730a51-3fcad\"", "lastModified": "Fri, 08 Dec 2023 12:21:37 GMT" }, "logs": { "nir-header": "{'Date': 'Sun, 10 Dec 2023 13:00:51 GMT', 'Server': 'Apache/2.4.29 (Ubuntu)', 'Access-Control-Allow-Origin': '*', 'Location': 'https://materialdigital.github.io/core-ontology/ontology.rdf', 'Content-Length': '342', 'Keep-Alive': 'timeout=5, max=100', 'Connection': 'Keep-Alive', 'Content-Type': 'text/html; charset=iso-8859-1'}",
@prefix dc: <http://purl.org/dc/elements/1.1/> . @prefix dct: <http://purl.org/dc/terms/> . @prefix owl: <http://www.w3.org/2002/07/owl#> . @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . @prefix sh: <http://www.w3.org/ns/shacl#> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . [] a sh:ValidationReport ; sh:conforms false ; sh:result [ a sh:ValidationResult ;
WARNING: An illegal reflective access operation has occurred WARNING: Illegal reflective access by com.google.inject.internal.cglib.core.$ReflectUtils$1 (file:/usr/local/src/webapp/archivo/archivo/helpingBinaries/profilechecker-1.1.0.jar) to method java.lang.ClassLoader.defineClass(java.lang.String,byte[],int,int,java.security.ProtectionDomain) WARNING: Please consider reporting this to the maintainers of com.google.inject.internal.cglib.core.$ReflectUtils$1 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations WARNING: All illegal access operations will be denied in a future release [main] ERROR uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl - Illegal redeclarations of entities: reuse of entity http://www.w3.org/ns/prov#wasRevisionOf in punning not allowed [Declaration(ObjectProperty(<http://www.w3.org/ns/prov#wasRevisionOf>)), Declaration(AnnotationProperty(<http://www.w3.org/ns/prov#wasRevisionOf>))] [main] ERROR uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl - Illegal redeclarations of entities: reuse of entity http://www.w3.org/ns/prov#specializationOf in punning not allowed [Declaration(ObjectProperty(<http://www.w3.org/ns/prov#specializationOf>)), Declaration(AnnotationProperty(<http://www.w3.org/ns/prov#specializationOf>))] [main] ERROR uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl - Illegal redeclarations of entities: reuse of entity http://www.w3.org/ns/prov#wasRevisionOf in punning not allowed [Declaration(ObjectProperty(<http://www.w3.org/ns/prov#wasRevisionOf>)), Declaration(AnnotationProperty(<http://www.w3.org/ns/prov#wasRevisionOf>))] [main] ERROR uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl - Illegal redeclarations of entities: reuse of entity http://www.w3.org/ns/prov#specializationOf in punning not allowed [Declaration(ObjectProperty(<http://www.w3.org/ns/prov#specializationOf>)), Declaration(AnnotationProperty(<http://www.w3.org/ns/prov#specializationOf>))] [main] ERROR uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl - Illegal redeclarations of entities: reuse of entity http://www.w3.org/ns/prov#wasRevisionOf in punning not allowed [Declaration(ObjectProperty(<http://www.w3.org/ns/prov#wasRevisionOf>)), Declaration(AnnotationProperty(<http://www.w3.org/ns/prov#wasRevisionOf>))]
<https://w3id.org/pmd/co/2DPixelCoordinates> <http://www.w3.org/2002/07/owl#equivalentClass> _:genid113 . <https://w3id.org/pmd/co/AgingProcess> <http://www.w3.org/2004/02/skos/core#definition> "The process of hardening an alloy by a method that causes a constituent to precipitate from solid solution."@en . <https://w3id.org/pmd/co/AnalysingProcess> <http://www.w3.org/2004/02/skos/core#definition> "A process that is driven by the primary intent to gain new measurements\nAn analysis process is either a transformative process or a non-transformative process."@en . <https://w3id.org/pmd/co/Component> <http://www.w3.org/2004/02/skos/core#definition> "An object that serves a specific technical application. Constituent part of a compound of parts that builds a technical application"@en . <https://w3id.org/pmd/co/ConditioningProcess> <http://www.w3.org/2004/02/skos/core#definition> "This activity describes the process of and the measures taken to set a tangible object to pre-defined environmental conditions."@en . <https://w3id.org/pmd/co/DemountingProcess> <http://www.w3.org/2004/02/skos/core#definition> "This class is used to describe the process of removing or disassembling a test piece or specimen from a test machine. This may include the usage of other process nodes and components (e.g. grips)."@en . <https://w3id.org/pmd/co/Department> <http://www.w3.org/2004/02/skos/core#definition> "A sub section of an organization [FIXME]"@en . <https://w3id.org/pmd/co/DigitalMaterialIdentifier> <http://www.w3.org/2002/07/owl#equivalentClass> _:genid47 . <https://w3id.org/pmd/co/Duration> <http://www.w3.org/2004/02/skos/core#definition> "A period of time with its own timescale and an epoch anchored in another timescale. A duration can be expressed via a single value as the first value of the period of time is always zero."@en . <https://w3id.org/pmd/co/Duration> <http://www.w3.org/2004/02/skos/core#definition> "Eine Zeitspanne mit einer eigenen Zeitskala und einer in einer anderen Zeitskala verankerten Epoche. Eine Dauer kann mit einem einzigen Wert ausgedr\u00FCckt werden, da der erste Wert der Zeitspanne immer Null ist."@de .
<http://purl.obolibrary.org/obo/RO_0000087> <http://www.w3.org/2000/01/rdf-schema#domain> <http://www.w3.org/ns/prov#Agent> . <http://purl.obolibrary.org/obo/RO_0000087> <http://www.w3.org/2000/01/rdf-schema#range> <http://www.w3.org/ns/prov#Role> . <http://www.w3.org/ns/prov#Activity> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Class> . <http://www.w3.org/ns/prov#Agent> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Class> . <http://www.w3.org/ns/prov#Entity> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Class> . <http://www.w3.org/ns/prov#Organization> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Class> . <http://www.w3.org/ns/prov#Person> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Class> . <http://www.w3.org/ns/prov#Role> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Class> . <http://www.w3.org/ns/prov#constraints> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#AnnotationProperty> . <http://www.w3.org/ns/prov#editorialNote> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#AnnotationProperty> .